HHsearch alignment for GI: peg_409 and conserved domain: TIGR02546
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=90.25 E-value=0.2 Score=29.76 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=17.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHH
Q ss_conf 8887998488899679999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRV 52 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv 52 (242)
T Consensus 153 GQRiGIFA~aG~GKSTLL~~i~ 174 (430)
T TIGR02546 153 GQRIGIFAGAGVGKSTLLGMIA 174 (430)
T ss_pred CCEEEEEECCCCCHHHHHHHHH
T ss_conf 5305787088861668999986