HHsearch alignment for GI: peg_409 and conserved domain: TIGR02784

>TIGR02784 addA_alphas double-strand break repair helicase AddA; InterPro: IPR014151 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the alphaproteobacteria and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=100.00  E-value=4.5e-43  Score=322.66  Aligned_cols=215  Identities=46%  Similarity=0.746  Sum_probs=199.5

Q ss_pred             HHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHH
Q ss_conf             899998276888799848889967999999999982478988956677687899999999999967752167-4221464
Q 537021.9.peg.4   22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS-DEILSAE  100 (242)
Q Consensus        22 ~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~-~~~~~~~  100 (242)
T Consensus         1 ~~Q~~AaDP~~S~WVSANAGSGKTHVLt~RViRLLL~G~~P~~ILCLTYTKAAAAeMq~RvF~rL~~Wa~L~nD~~L~~~   80 (1190)
T TIGR02784         1 DRQAQAADPAASAWVSANAGSGKTHVLTQRVIRLLLAGTEPSKILCLTYTKAAAAEMQNRVFKRLGEWAVLDNDADLRAR   80 (1190)
T ss_pred             CCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf             94120037774701243167885224899999986178783100020555899999999987551044438886889999


Q ss_pred             HHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             99731---479997899999999999983100132111799998755542897588999851683789999999999999
Q 537021.9.peg.4  101 ITKIQ---GKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL  177 (242)
Q Consensus       101 l~~~~---~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d~~~~~~l~~~~~~~~~  177 (242)
T Consensus        81 l~~LeGe~~~~~da~~L~~AR~LFArALETPGGLKIQTIHAFCe~LL~~FPLEAnv~~~F~~~DDr~~A~l~~~arr~ll  160 (1190)
T TIGR02784        81 LEALEGEAGKRPDAAKLAEARRLFARALETPGGLKIQTIHAFCEALLHQFPLEANVAGHFSVIDDRAAAALLEEARRELL  160 (1190)
T ss_pred             HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHH
T ss_conf             99842546888888899999899999741787761577799999885207751378988533026899999999999997


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             98432780359999999994169677999999999848999999866208999858999974
Q 537021.9.peg.4  178 ASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW  239 (242)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~e~~l~  239 (242)
T Consensus       161 ~~~~~~~d~~~~~a~a~~l~~~~e~gl~~ll~ei~~~R~~~~~fl~---~~~~~~~~~~~l~  219 (1190)
T TIGR02784       161 AGAAAPPDPALAEALATVLEAAGETGLEALLAEIVAKRDALSAFLD---EAGGAEGAEADLR  219 (1190)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_conf             2303788405899999999871655878999999961688878999---8640235899999