HHsearch alignment for GI: peg_409 and conserved domain: TIGR02784
>TIGR02784 addA_alphas double-strand break repair helicase AddA; InterPro: IPR014151 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the alphaproteobacteria and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=100.00 E-value=4.5e-43 Score=322.66 Aligned_cols=215 Identities=46% Similarity=0.746 Sum_probs=199.5
Q ss_pred HHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHH
Q ss_conf 899998276888799848889967999999999982478988956677687899999999999967752167-4221464
Q 537021.9.peg.4 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS-DEILSAE 100 (242)
Q Consensus 22 ~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~-~~~~~~~ 100 (242)
T Consensus 1 ~~Q~~AaDP~~S~WVSANAGSGKTHVLt~RViRLLL~G~~P~~ILCLTYTKAAAAeMq~RvF~rL~~Wa~L~nD~~L~~~ 80 (1190)
T TIGR02784 1 DRQAQAADPAASAWVSANAGSGKTHVLTQRVIRLLLAGTEPSKILCLTYTKAAAAEMQNRVFKRLGEWAVLDNDADLRAR 80 (1190)
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 94120037774701243167885224899999986178783100020555899999999987551044438886889999
Q ss_pred HHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99731---479997899999999999983100132111799998755542897588999851683789999999999999
Q 537021.9.peg.4 101 ITKIQ---GKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 (242)
Q Consensus 101 l~~~~---~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d~~~~~~l~~~~~~~~~ 177 (242)
T Consensus 81 l~~LeGe~~~~~da~~L~~AR~LFArALETPGGLKIQTIHAFCe~LL~~FPLEAnv~~~F~~~DDr~~A~l~~~arr~ll 160 (1190)
T TIGR02784 81 LEALEGEAGKRPDAAKLAEARRLFARALETPGGLKIQTIHAFCEALLHQFPLEANVAGHFSVIDDRAAAALLEEARRELL 160 (1190)
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHH
T ss_conf 99842546888888899999899999741787761577799999885207751378988533026899999999999997
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98432780359999999994169677999999999848999999866208999858999974
Q 537021.9.peg.4 178 ASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 (242)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~e~~l~ 239 (242)
T Consensus 161 ~~~~~~~d~~~~~a~a~~l~~~~e~gl~~ll~ei~~~R~~~~~fl~---~~~~~~~~~~~l~ 219 (1190)
T TIGR02784 161 AGAAAPPDPALAEALATVLEAAGETGLEALLAEIVAKRDALSAFLD---EAGGAEGAEADLR 219 (1190)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_conf 2303788405899999999871655878999999961688878999---8640235899999