HHsearch alignment for GI: peg_409 and conserved domain: TIGR02785
>TIGR02785 addA_Gpos recombination helicase AddA; InterPro: IPR014152 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the Firmicutes and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=100.00 E-value=1.8e-35 Score=269.25 Aligned_cols=211 Identities=22% Similarity=0.266 Sum_probs=171.4
Q ss_pred HCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 509489999827688879984888996799999999998247---89889566776878999999999999677521674
Q 537021.9.peg.4 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 (242)
Q Consensus 18 ~~~~~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g---~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~ 94 (242)
T Consensus 1 ~wT~~Q~~AI~~~G~nILVsAsAGSGKTaVLVERii~~i~~gE~pvdiDrLLVVTFTnaAA~EMK~Ri~~~l~k~l~~~~ 80 (1295)
T TIGR02785 1 QWTDEQWQAIYDRGQNILVSASAGSGKTAVLVERIIKKILRGENPVDIDRLLVVTFTNAAAREMKERIEEALQKELAQEP 80 (1295)
T ss_pred CCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 98788899996368864765322666147899999999647887702021036788899999999999999999743688
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CHHHHHHHHHHH
Q ss_conf 2214649973147999789999999999998310013211179999875554289758899985168-378999999999
Q 537021.9.peg.4 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIAD-EEQSKKLIEEAK 173 (242)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d-~~~~~~l~~~~~ 173 (242)
T Consensus 81 -----------~d~P~~~ta~~~~~hl~~QL~lL~~A~ISTlhsFCL~Vir~~YYllDlDP~FRil~nd~e~~LL~~E~~ 149 (1295)
T TIGR02785 81 -----------DDDPERRTAVDNSKHLRRQLALLNKANISTLHSFCLKVIRKHYYLLDLDPSFRILTNDTEELLLLKEVV 149 (1295)
T ss_pred -----------CCCCHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf -----------887123204437899999996446765104578999997666043553788765775678889887579
Q ss_pred HHHHHHHHCCCH-HHHHHHHHHHHH-HCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998432780-359999999994-1696779999999998------48999999866208999858999974
Q 537021.9.peg.4 174 KSTLASIMLDNN-EELKKAFYEILE-ISNDEDIETLISDIIS------NRTALKLIFFFFSYLWRRKIIEKSLW 239 (242)
Q Consensus 174 ~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~~~~l~~~l~------~~~~~~~~~~~~~~~~~r~~~e~~l~ 239 (242)
T Consensus 150 ~d~~E~~y~~~d~~~F~~L~~~f~~rDR~D~~L~~li~~lY~F~~a~P~Pe~WL~~l~~~Y~V~~~~~~e~~~~ 223 (1295)
T TIGR02785 150 DDVLEEEYYKEDNEAFFELVDNFSGRDRSDDGLRDLILKLYDFARATPNPEKWLNKLAEAYEVKEDFLIESKLL 223 (1295)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 99999985201515899999865078977012899999999997449986788862655422340467888999