HHsearch alignment for GI: peg_409 and conserved domain: TIGR02788
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=95.77 E-value=0.0077 Score=39.73 Aligned_cols=44 Identities=25% Similarity=0.434 Sum_probs=28.4
Q ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 998276888799848889967999999999982478988956677687
Q 537021.9.peg.4 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 (242)
Q Consensus 25 ~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~ 72 (242)
T Consensus 152 ~~Ai~~~knIii~GGTgSGKTTf~-kal~~~IP~~---ER~iTIED~~ 195 (328)
T TIGR02788 152 RLAIASRKNIIISGGTGSGKTTFL-KALVKEIPKD---ERLITIEDTR 195 (328)
T ss_pred HHHHHCCCEEEEEECCCCHHHHHH-HHHHHCCCCC---CCEEEEEEEE
T ss_conf 999873891999906897189999-9997327622---5278885201