HHsearch alignment for GI: peg_409 and conserved domain: TIGR03117
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=90.51 E-value=0.49 Score=27.02 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=34.4
Q ss_pred CCCCEEEEECCCCCHHHH-HHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 688879984888996799-9999999982-47898895667768789999999999996
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHI-LVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~t-L~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~RI~~~l 86 (242)
T Consensus 15 ~~~v~lVEAGTGTGKSLAYLvPAl~~a~~~~g---~rVVISTaT~aLQeQL~~kd~pl~ 70 (636)
T TIGR03117 15 QKRIGMLEASTGVGKTLAMIMAALTMLKERPD---QKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC---CCEEEECCCHHHHHHHHHHHHHHH
T ss_conf 38489998999710889999999999985799---988997987999999976656599