HHsearch alignment for GI: peg_409 and conserved domain: cd01122

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

Probab=91.10  E-value=0.32  Score=28.33  Aligned_cols=52  Identities=19%  Similarity=0.259  Sum_probs=35.1

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             888799848889967999999999982-47898895667768789999999999996
Q 537021.9.peg.4   31 TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII   86 (242)
Q Consensus        31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~RI~~~l   86 (242)
T Consensus        30 GeL~viaarpg~GKT~f~~~~a~~~~~~~g~---~vl~~Sl-Em~~~~~~~Rlls~~   82 (271)
T cd01122          30 GELIILTAGTGVGKTTFLREYALDLITQHGV---RVGTISL-EEPVVRTARRLLGQY   82 (271)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHCCC---EEEEEEC-CCCHHHHHHHHHHHH
T ss_conf             8089999689986999999999999997699---0899970-499999999999998