HHsearch alignment for GI: peg_409 and conserved domain: cd01124
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.15 E-value=0.0026 Score=43.03 Aligned_cols=46 Identities=24% Similarity=0.274 Sum_probs=34.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87998488899679999999999824789889566776878999999999
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI 82 (242)
T Consensus 1 stLi~G~pGsGKT~~a~qfl~~~a~~g---e~~lyis~eE-~~~~l~~~~ 46 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG---EPGLYVTLEE-SPEELIENA 46 (187)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCC---CCEEEEEECC-CHHHHHHHH
T ss_conf 915876899999999999999998769---9789999507-999999999