HHsearch alignment for GI: peg_409 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.15  E-value=0.0026  Score=43.03  Aligned_cols=46  Identities=24%  Similarity=0.274  Sum_probs=34.1

Q ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             87998488899679999999999824789889566776878999999999
Q 537021.9.peg.4   33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV   82 (242)
Q Consensus        33 ~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI   82 (242)
T Consensus         1 stLi~G~pGsGKT~~a~qfl~~~a~~g---e~~lyis~eE-~~~~l~~~~   46 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARG---EPGLYVTLEE-SPEELIENA   46 (187)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHCC---CCEEEEEECC-CHHHHHHHH
T ss_conf             915876899999999999999998769---9789999507-999999999