HHsearch alignment for GI: peg_409 and conserved domain: cd01127

>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=95.35  E-value=0.023  Score=36.43  Aligned_cols=29  Identities=14%  Similarity=0.228  Sum_probs=24.6

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf             88879984888996799999999998247
Q 537021.9.peg.4   31 TRSAWVSANAGSGKTHILVQRVLRLLLAN   59 (242)
Q Consensus        31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g   59 (242)
T Consensus        42 ~~H~lv~G~tGsGKT~~i~~li~~~~~rg   70 (410)
T cd01127          42 EAHTMIIGTTGTGKTTQIRELLASIRARG   70 (410)
T ss_pred             HCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf             27479988999988999999999999869