HHsearch alignment for GI: peg_409 and conserved domain: cd01127
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=95.35 E-value=0.023 Score=36.43 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 88879984888996799999999998247
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
T Consensus 42 ~~H~lv~G~tGsGKT~~i~~li~~~~~rg 70 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIRELLASIRARG 70 (410)
T ss_pred HCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 27479988999988999999999999869