HHsearch alignment for GI: peg_409 and conserved domain: cd03115
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.03 E-value=0.0049 Score=41.13 Aligned_cols=50 Identities=22% Similarity=0.187 Sum_probs=32.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH--HHHHHHHHHHHHHHH
Q ss_conf 79984888996799999999998247898895667768--789999999999996
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT--KAAAAEMSHRVLEII 86 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT--~kAA~El~~RI~~~l 86 (242)
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~~~~~~---kV~lit~Dt~R~gA~eQL~~~a~~l 54 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGK---KVLLVAADTYRPAAIEQLRVLGEQV 54 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC---EEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 999899999889999999999997699---2899974887577999999999974