HHsearch alignment for GI: peg_409 and conserved domain: cd03115

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.03  E-value=0.0049  Score=41.13  Aligned_cols=50  Identities=22%  Similarity=0.187  Sum_probs=32.1

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH--HHHHHHHHHHHHHHH
Q ss_conf             79984888996799999999998247898895667768--789999999999996
Q 537021.9.peg.4   34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT--KAAAAEMSHRVLEII   86 (242)
Q Consensus        34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT--~kAA~El~~RI~~~l   86 (242)
T Consensus         3 i~lvGptGvGKTTTiaKLA~~~~~~~~---kV~lit~Dt~R~gA~eQL~~~a~~l   54 (173)
T cd03115           3 ILLVGLQGVGKTTTAAKLALYLKKKGK---KVLLVAADTYRPAAIEQLRVLGEQV   54 (173)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCC---EEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf             999899999889999999999997699---2899974887577999999999974