Query 537021.9.peg.409_1
Match_columns 242
No_of_seqs 111 out of 3671
Neff 8.9
Searched_HMMs 39220
Date Wed May 25 05:25:51 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_409.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02784 addA_alphas double-s 100.0 4.5E-43 0 322.7 18.1 215 22-239 1-219 (1190)
2 TIGR02785 addA_Gpos recombinat 100.0 1.8E-35 4.5E-40 269.3 17.8 211 18-239 1-223 (1295)
3 TIGR01073 pcrA ATP-dependent D 100.0 5.3E-36 1.4E-40 272.9 12.6 205 17-234 2-220 (811)
4 PRK11773 uvrD DNA-dependent he 100.0 6.4E-33 1.6E-37 251.3 16.1 127 12-176 2-130 (722)
5 TIGR01075 uvrD DNA helicase II 100.0 5.6E-33 1.4E-37 251.7 8.0 182 16-235 1-188 (741)
6 PRK10919 ATP-dependent DNA hel 100.0 6.6E-31 1.7E-35 237.1 13.3 121 20-177 3-125 (672)
7 TIGR01074 rep ATP-dependent DN 100.0 4.6E-30 1.2E-34 231.2 11.5 124 17-177 1-126 (677)
8 COG1074 RecB ATP-dependent exo 100.0 6.4E-29 1.6E-33 223.2 15.5 178 18-199 3-184 (1139)
9 PRK13909 putative recombinatio 100.0 1.3E-28 3.3E-33 221.0 15.7 127 34-163 1-127 (911)
10 pfam00580 UvrD-helicase UvrD/R 100.0 4.1E-29 1E-33 224.5 13.0 119 20-175 1-122 (494)
11 PRK10876 recB exonuclease V su 99.9 1.9E-26 4.9E-31 205.7 15.1 144 31-179 16-170 (1181)
12 PRK11054 helD DNA helicase IV; 99.9 6.6E-26 1.7E-30 202.0 9.2 103 9-151 184-290 (684)
13 COG0210 UvrD Superfamily I DNA 99.9 4.5E-25 1.1E-29 196.1 11.5 121 19-176 2-124 (655)
14 TIGR00609 recB exodeoxyribonuc 99.9 2.1E-23 5.3E-28 184.4 13.0 160 31-192 9-200 (1324)
15 KOG2108 consensus 99.1 6.1E-11 1.6E-15 96.7 4.4 81 6-88 2-84 (853)
16 KOG1803 consensus 99.0 5.5E-10 1.4E-14 90.0 6.2 65 16-83 182-250 (649)
17 TIGR01447 recD exodeoxyribonuc 98.6 5.1E-08 1.3E-12 76.1 4.9 119 22-165 230-360 (753)
18 COG3973 Superfamily I DNA and 98.4 3.5E-06 8.8E-11 63.3 10.3 70 11-80 204-278 (747)
19 PRK10875 recD exonuclease V su 98.3 9E-07 2.3E-11 67.4 4.9 66 24-89 152-221 (607)
20 KOG1805 consensus 98.3 6.5E-07 1.7E-11 68.3 4.0 67 16-85 666-736 (1100)
21 KOG1802 consensus 98.0 4.6E-06 1.2E-10 62.4 2.8 66 18-85 409-477 (935)
22 TIGR01448 recD_rel helicase, R 97.6 6.3E-05 1.6E-09 54.4 3.9 76 7-82 336-426 (769)
23 COG3972 Superfamily I DNA and 97.5 6.5E-05 1.7E-09 54.3 2.5 72 17-89 161-233 (660)
24 PRK09694 hypothetical protein; 97.5 0.0037 9.4E-08 42.0 11.3 158 17-175 287-467 (878)
25 pfam00270 DEAD DEAD/DEAH box h 97.3 0.00031 8E-09 49.5 4.4 118 30-165 13-130 (167)
26 KOG1807 consensus 97.3 0.00015 3.8E-09 51.8 2.7 64 21-84 381-449 (1025)
27 cd00046 DEXDc DEAD-like helica 97.3 0.00028 7.1E-09 49.8 4.1 114 32-165 1-114 (144)
28 PRK11664 ATP-dependent RNA hel 97.3 0.00031 7.9E-09 49.5 4.0 57 29-88 18-74 (812)
29 pfam04851 ResIII Type III rest 97.2 0.0012 3E-08 45.5 5.9 51 30-83 17-67 (103)
30 PRK13709 conjugal transfer nic 97.2 0.00062 1.6E-08 47.4 4.5 64 16-81 965-1036(1756)
31 PRK13826 Dtr system oriT relax 97.1 0.00096 2.5E-08 46.1 5.1 67 12-81 374-444 (1102)
32 COG1201 Lhr Lhr-like helicases 97.1 0.0011 2.8E-08 45.7 5.2 134 6-141 11-163 (814)
33 smart00487 DEXDc DEAD-like hel 97.1 0.00077 2E-08 46.7 4.2 127 21-165 10-140 (201)
34 PRK13889 conjugal transfer rel 97.1 0.00088 2.3E-08 46.3 4.5 60 19-81 346-409 (992)
35 PRK13767 ATP-dependent helicas 97.0 0.0024 6.2E-08 43.2 6.3 69 20-88 33-110 (878)
36 TIGR02782 TrbB_P P-type conjug 96.9 0.00055 1.4E-08 47.8 2.6 57 25-86 133-190 (315)
37 PRK00149 dnaA chromosomal repl 96.9 0.031 7.9E-07 35.5 11.3 58 23-81 134-197 (447)
38 PRK11776 ATP-dependent RNA hel 96.8 0.0029 7.4E-08 42.7 5.3 80 4-83 3-93 (459)
39 TIGR01420 pilT_fam twitching m 96.8 0.0017 4.4E-08 44.3 4.0 31 26-56 122-152 (350)
40 PRK11634 ATP-dependent RNA hel 96.5 0.0047 1.2E-07 41.2 4.5 69 16-84 26-96 (629)
41 pfam02562 PhoH PhoH-like prote 96.4 0.0045 1.2E-07 41.4 4.3 55 17-72 2-59 (205)
42 cd00268 DEADc DEAD-box helicas 96.3 0.0062 1.6E-07 40.4 4.4 70 16-85 19-92 (203)
43 PRK05580 primosome assembly pr 96.3 0.0068 1.7E-07 40.1 4.6 66 20-88 169-240 (699)
44 TIGR02768 TraA_Ti Ti-type conj 96.3 0.0072 1.8E-07 39.9 4.6 61 18-81 413-477 (888)
45 pfam07652 Flavi_DEAD Flaviviru 96.2 0.0041 1E-07 41.7 3.2 48 34-84 5-53 (146)
46 TIGR02173 cyt_kin_arch cytidyl 96.2 0.0022 5.7E-08 43.5 1.8 22 34-56 3-24 (173)
47 PRK10590 ATP-dependent RNA hel 96.2 0.0092 2.3E-07 39.2 4.8 69 16-84 21-97 (457)
48 cd01124 KaiC KaiC is a circadi 96.1 0.0026 6.7E-08 43.0 1.8 46 33-82 1-46 (187)
49 PRK04328 hypothetical protein; 96.1 0.0039 9.9E-08 41.8 2.6 50 30-83 22-72 (250)
50 TIGR00376 TIGR00376 DNA helica 96.1 0.0082 2.1E-07 39.5 4.1 69 18-87 201-273 (709)
51 PRK11192 ATP-dependent RNA hel 96.0 0.013 3.2E-07 38.2 4.8 70 16-85 23-98 (417)
52 cd03115 SRP The signal recogni 96.0 0.0049 1.2E-07 41.1 2.7 50 34-86 3-54 (173)
53 PRK08116 hypothetical protein; 96.0 0.0051 1.3E-07 41.0 2.8 47 31-85 108-154 (262)
54 TIGR03158 cas3_cyano CRISPR-as 96.0 0.02 5E-07 36.9 5.7 58 26-89 8-66 (357)
55 pfam00437 GSPII_E Type II/IV s 96.0 0.0075 1.9E-07 39.8 3.6 29 27-55 135-163 (283)
56 PRK01297 ATP-dependent RNA hel 96.0 0.02 5.2E-07 36.8 5.6 68 17-84 105-181 (472)
57 pfam05970 DUF889 PIF1 helicase 95.9 0.0029 7.4E-08 42.7 1.2 38 38-78 1-38 (418)
58 pfam06414 Zeta_toxin Zeta toxi 95.9 0.03 7.8E-07 35.5 6.4 24 32-55 13-36 (191)
59 cd00009 AAA The AAA+ (ATPases 95.9 0.013 3.4E-07 38.1 4.5 51 29-80 17-68 (151)
60 PRK02362 ski2-like helicase; P 95.9 0.017 4.3E-07 37.3 5.0 65 17-84 21-89 (736)
61 PRK04837 ATP-dependent RNA hel 95.8 0.019 4.9E-07 36.9 5.1 71 16-90 29-108 (423)
62 PRK13833 conjugal transfer pro 95.8 0.0077 2E-07 39.7 3.1 46 26-72 139-184 (323)
63 pfam00448 SRP54 SRP54-type pro 95.8 0.0067 1.7E-07 40.1 2.7 51 33-86 3-55 (196)
64 smart00489 DEXDc3 DEAD-like he 95.8 0.017 4.4E-07 37.3 4.7 49 28-76 24-75 (289)
65 smart00488 DEXDc2 DEAD-like he 95.8 0.017 4.4E-07 37.3 4.7 49 28-76 24-75 (289)
66 pfam10412 TrwB_AAD_bind Type I 95.8 0.012 3.2E-07 38.3 4.0 31 29-59 13-43 (386)
67 TIGR02788 VirB11 P-type DNA tr 95.8 0.0077 2E-07 39.7 2.8 44 25-72 152-195 (328)
68 PRK06067 flagellar accessory p 95.7 0.0056 1.4E-07 40.7 2.1 49 30-82 30-79 (241)
69 PRK09302 circadian clock prote 95.7 0.0071 1.8E-07 40.0 2.6 42 31-75 24-66 (501)
70 COG2804 PulE Type II secretory 95.7 0.014 3.7E-07 37.8 4.1 34 25-58 252-285 (500)
71 COG1061 SSL2 DNA or RNA helica 95.7 0.017 4.4E-07 37.2 4.5 52 31-88 55-106 (442)
72 PRK04863 mukB cell division pr 95.7 0.2 5.1E-06 29.8 12.2 115 30-147 25-219 (1486)
73 TIGR01970 DEAH_box_HrpB ATP-de 95.7 0.013 3.3E-07 38.1 3.8 66 23-91 9-75 (858)
74 COG1198 PriA Primosomal protei 95.7 0.011 2.8E-07 38.7 3.4 67 19-88 198-271 (730)
75 COG1204 Superfamily II helicas 95.7 0.026 6.7E-07 36.0 5.3 77 5-83 18-97 (766)
76 PRK09302 circadian clock prote 95.7 0.0059 1.5E-07 40.5 1.9 42 31-75 266-307 (501)
77 TIGR02760 TraI_TIGR conjugativ 95.6 0.0037 9.3E-08 42.0 0.8 69 13-81 1125-1203(2193)
78 pfam03796 DnaB_C DnaB-like hel 95.6 0.096 2.4E-06 32.0 8.0 52 31-86 19-71 (186)
79 TIGR00631 uvrb excinuclease AB 95.6 0.015 3.9E-07 37.6 3.9 112 19-142 10-130 (667)
80 TIGR01587 cas3_core CRISPR-ass 95.6 0.021 5.3E-07 36.7 4.6 112 34-146 2-129 (424)
81 PRK10436 hypothetical protein; 95.6 0.017 4.2E-07 37.4 4.1 29 27-55 211-239 (461)
82 PRK01172 ski2-like helicase; P 95.6 0.036 9.3E-07 35.0 5.8 76 4-84 9-87 (674)
83 COG1110 Reverse gyrase [DNA re 95.6 0.22 5.6E-06 29.5 11.5 77 9-88 70-151 (1187)
84 KOG0338 consensus 95.6 0.017 4.4E-07 37.3 4.0 86 4-93 180-279 (691)
85 KOG0350 consensus 95.5 0.015 3.9E-07 37.6 3.7 54 31-84 183-237 (620)
86 TIGR02533 type_II_gspE general 95.5 0.011 2.7E-07 38.7 2.8 32 24-55 238-269 (495)
87 PRK13894 conjugal transfer ATP 95.5 0.012 3.1E-07 38.3 3.0 45 27-72 145-189 (320)
88 COG2805 PilT Tfp pilus assembl 95.5 0.019 4.8E-07 37.0 3.9 32 26-57 120-151 (353)
89 COG1643 HrpA HrpA-like helicas 95.4 0.02 5E-07 36.9 3.9 54 30-83 64-123 (845)
90 PRK13851 type IV secretion sys 95.4 0.0093 2.4E-07 39.1 2.2 43 26-72 157-199 (343)
91 PRK04537 ATP-dependent RNA hel 95.4 0.034 8.7E-07 35.2 5.1 70 15-84 28-106 (574)
92 cd01129 PulE-GspE PulE/GspE Th 95.4 0.022 5.7E-07 36.5 4.1 28 28-55 77-104 (264)
93 COG4098 comFA Superfamily II D 95.4 0.021 5.4E-07 36.6 4.0 57 29-88 114-170 (441)
94 KOG0731 consensus 95.4 0.25 6.3E-06 29.1 9.5 122 8-134 321-448 (774)
95 PRK09401 reverse gyrase; Revie 95.4 0.26 6.5E-06 29.0 12.1 63 22-87 81-146 (1176)
96 COG4581 Superfamily II RNA hel 95.4 0.027 6.8E-07 35.9 4.4 62 25-89 128-189 (1041)
97 PRK13768 GTPase; Provisional 95.4 0.019 4.8E-07 37.0 3.7 27 33-59 4-30 (253)
98 pfam06745 KaiC KaiC. This fami 95.4 0.012 3E-07 38.4 2.6 51 30-84 17-69 (231)
99 COG0552 FtsY Signal recognitio 95.4 0.031 8E-07 35.4 4.7 69 12-80 116-188 (340)
100 pfam05729 NACHT NACHT domain. 95.4 0.019 4.9E-07 36.9 3.7 31 32-63 1-31 (165)
101 cd01127 TrwB Bacterial conjuga 95.3 0.023 5.8E-07 36.4 4.0 29 31-59 42-70 (410)
102 PRK08074 bifunctional ATP-depe 95.3 0.057 1.4E-06 33.6 6.0 49 30-81 276-325 (932)
103 PRK06731 flhF flagellar biosyn 95.3 0.012 3.1E-07 38.3 2.6 52 34-86 78-129 (270)
104 cd01130 VirB11-like_ATPase Typ 95.3 0.02 5E-07 36.9 3.6 27 28-54 22-48 (186)
105 KOG0952 consensus 95.3 0.027 6.9E-07 35.9 4.2 61 28-88 123-190 (1230)
106 PRK10536 hypothetical protein; 95.3 0.027 6.9E-07 35.9 4.2 52 19-71 59-113 (262)
107 COG0513 SrmB Superfamily II DN 95.3 0.031 8E-07 35.4 4.5 72 16-87 49-124 (513)
108 PRK07952 DNA replication prote 95.3 0.012 3.1E-07 38.4 2.4 48 31-86 96-143 (242)
109 PRK13342 recombination factor 95.2 0.28 7.2E-06 28.7 9.4 50 29-84 35-84 (417)
110 CHL00176 ftsH cell division pr 95.2 0.036 9.1E-07 35.0 4.5 75 13-90 189-266 (631)
111 smart00382 AAA ATPases associa 95.1 0.021 5.2E-07 36.7 3.1 29 31-59 2-30 (148)
112 pfam00308 Bac_DnaA Bacterial d 95.0 0.051 1.3E-06 34.0 5.0 45 24-69 24-71 (219)
113 PRK06526 transposase; Provisio 95.0 0.036 9.1E-07 35.0 4.2 39 30-71 97-135 (254)
114 PRK04841 transcriptional regul 95.0 0.013 3.4E-07 38.0 2.0 25 28-52 28-53 (903)
115 KOG0330 consensus 95.0 0.038 9.7E-07 34.9 4.3 65 18-82 83-149 (476)
116 COG0467 RAD55 RecA-superfamily 95.0 0.017 4.3E-07 37.3 2.4 43 30-75 22-64 (260)
117 KOG0733 consensus 95.0 0.11 2.8E-06 31.7 6.6 79 7-86 199-313 (802)
118 TIGR00368 TIGR00368 Mg chelata 94.9 0.014 3.6E-07 37.9 1.9 48 31-79 213-265 (505)
119 pfam09848 DUF2075 Uncharacteri 94.9 0.034 8.7E-07 35.2 3.8 50 34-83 4-60 (348)
120 cd00984 DnaB_C DnaB helicase C 94.9 0.21 5.2E-06 29.7 7.8 53 31-87 13-66 (242)
121 COG1484 DnaC DNA replication p 94.8 0.02 5E-07 36.9 2.5 48 30-85 104-151 (254)
122 KOG0328 consensus 94.8 0.0021 5.3E-08 43.7 -2.5 67 17-83 48-116 (400)
123 COG1205 Distinct helicase fami 94.8 0.081 2.1E-06 32.5 5.6 69 20-90 71-143 (851)
124 PRK12377 putative replication 94.8 0.037 9.3E-07 35.0 3.8 48 30-85 100-147 (248)
125 PRK08181 transposase; Validate 94.8 0.04 1E-06 34.7 4.0 38 31-71 106-143 (269)
126 CHL00181 cbbX CbbX; Provisiona 94.8 0.37 9.5E-06 27.9 10.6 28 32-60 60-88 (287)
127 PRK13766 Hef nuclease; Provisi 94.8 0.038 9.6E-07 34.9 3.8 63 23-87 20-83 (764)
128 PRK11331 5-methylcytosine-spec 94.8 0.016 4.1E-07 37.5 1.9 42 30-72 193-234 (459)
129 PRK13407 bchI magnesium chelat 94.8 0.032 8.1E-07 35.4 3.4 29 27-56 24-53 (334)
130 PRK00254 ski2-like helicase; P 94.8 0.075 1.9E-06 32.8 5.3 65 17-84 21-90 (717)
131 TIGR01241 FtsH_fam ATP-depende 94.7 0.022 5.6E-07 36.5 2.5 100 28-133 89-195 (505)
132 COG0507 RecD ATP-dependent exo 94.7 0.2 5E-06 29.8 7.3 76 8-83 191-277 (696)
133 PRK05703 flhF flagellar biosyn 94.7 0.038 9.6E-07 34.9 3.5 50 31-82 210-262 (412)
134 PRK00411 cdc6 cell division co 94.7 0.042 1.1E-06 34.5 3.8 28 30-58 54-81 (394)
135 PRK08506 replicative DNA helic 94.6 0.17 4.4E-06 30.2 6.9 104 31-148 192-302 (473)
136 PRK12726 flagellar biosynthesi 94.6 0.028 7.1E-07 35.8 2.7 52 34-86 209-260 (407)
137 pfam01695 IstB IstB-like ATP b 94.6 0.051 1.3E-06 34.0 4.0 47 30-84 46-92 (178)
138 PRK08533 flagellar accessory p 94.6 0.02 5.1E-07 36.8 2.0 49 29-81 21-70 (230)
139 PRK06835 DNA replication prote 94.6 0.03 7.8E-07 35.5 2.9 47 30-84 182-228 (330)
140 PRK10463 hydrogenase nickel in 94.5 0.027 7E-07 35.9 2.6 45 36-85 109-153 (290)
141 PRK09183 transposase/IS protei 94.5 0.054 1.4E-06 33.8 4.1 47 30-84 100-146 (258)
142 KOG0991 consensus 94.5 0.058 1.5E-06 33.5 4.2 33 25-57 41-74 (333)
143 pfam00004 AAA ATPase family as 94.5 0.037 9.5E-07 34.9 3.2 51 34-87 1-51 (131)
144 PRK11747 dinG ATP-dependent DN 94.5 0.037 9.3E-07 35.0 3.1 46 31-79 47-93 (697)
145 TIGR03499 FlhF flagellar biosy 94.4 0.03 7.7E-07 35.5 2.6 34 34-69 197-231 (282)
146 PRK10733 hflB ATP-dependent me 94.4 0.06 1.5E-06 33.5 4.1 75 13-90 164-241 (644)
147 COG0606 Predicted ATPase with 94.4 0.026 6.5E-07 36.0 2.1 39 29-69 196-234 (490)
148 KOG0345 consensus 94.3 0.074 1.9E-06 32.8 4.5 55 30-84 42-101 (567)
149 PRK06921 hypothetical protein; 94.3 0.061 1.6E-06 33.4 4.0 39 30-71 115-154 (265)
150 COG4962 CpaF Flp pilus assembl 94.2 0.033 8.4E-07 35.3 2.5 42 27-72 169-210 (355)
151 pfam05496 RuvB_N Holliday junc 94.2 0.045 1.2E-06 34.3 3.2 26 30-56 49-74 (234)
152 PRK04195 replication factor C 94.2 0.03 7.7E-07 35.5 2.3 24 31-55 40-63 (403)
153 cd01131 PilT Pilus retraction 94.2 0.045 1.1E-06 34.4 3.1 26 32-57 2-27 (198)
154 PRK05298 excinuclease ABC subu 94.2 0.033 8.3E-07 35.3 2.4 68 18-91 13-87 (657)
155 cd01120 RecA-like_NTPases RecA 94.2 0.06 1.5E-06 33.4 3.7 46 34-83 2-47 (165)
156 TIGR00073 hypB hydrogenase acc 94.1 0.034 8.6E-07 35.2 2.3 61 20-85 15-83 (225)
157 PRK13900 type IV secretion sys 94.1 0.045 1.2E-06 34.3 2.9 41 26-71 155-196 (332)
158 pfam07728 AAA_5 AAA domain (dy 94.1 0.046 1.2E-06 34.3 3.0 24 33-57 1-24 (139)
159 TIGR00643 recG ATP-dependent D 94.0 0.087 2.2E-06 32.3 4.2 67 18-87 307-381 (721)
160 PRK03992 proteasome-activating 94.0 0.22 5.7E-06 29.4 6.3 28 28-56 163-190 (390)
161 KOG0734 consensus 94.0 0.19 4.7E-06 30.0 5.9 96 31-132 337-435 (752)
162 CHL00081 chlI Mg-protoporyphyr 93.9 0.043 1.1E-06 34.4 2.6 29 27-56 28-57 (347)
163 cd01126 TraG_VirD4 The TraG/Tr 93.9 0.037 9.5E-07 34.9 2.3 24 33-58 1-24 (384)
164 COG0593 DnaA ATPase involved i 93.9 0.16 4.1E-06 30.5 5.5 50 31-80 113-164 (408)
165 PRK12723 flagellar biosynthesi 93.9 0.064 1.6E-06 33.2 3.4 53 34-87 177-233 (388)
166 PRK10416 cell division protein 93.8 0.048 1.2E-06 34.1 2.7 54 31-85 293-348 (499)
167 pfam01443 Viral_helicase1 Vira 93.8 0.045 1.1E-06 34.3 2.5 20 34-53 1-20 (226)
168 PRK12608 transcription termina 93.8 0.087 2.2E-06 32.3 4.0 27 31-58 132-158 (379)
169 KOG0989 consensus 93.8 0.054 1.4E-06 33.8 2.8 37 30-66 55-92 (346)
170 PTZ00110 helicase; Provisional 93.8 0.12 3.1E-06 31.3 4.6 66 18-83 204-276 (602)
171 KOG0920 consensus 93.7 0.1 2.7E-06 31.8 4.2 64 22-86 176-243 (924)
172 pfam02399 Herpes_ori_bp Origin 93.7 0.083 2.1E-06 32.5 3.6 53 31-85 48-101 (829)
173 pfam03029 ATP_bind_1 Conserved 93.7 0.046 1.2E-06 34.2 2.3 23 36-58 1-23 (234)
174 PRK12724 flagellar biosynthesi 93.6 0.062 1.6E-06 33.4 2.9 48 34-81 226-274 (432)
175 pfam01580 FtsK_SpoIIIE FtsK/Sp 93.6 0.23 5.9E-06 29.4 5.8 39 33-72 40-80 (202)
176 COG2256 MGS1 ATPase related to 93.6 0.17 4.2E-06 30.3 5.1 55 30-87 47-101 (436)
177 COG5635 Predicted NTPase (NACH 93.6 0.057 1.5E-06 33.6 2.7 32 32-63 223-254 (824)
178 TIGR02881 spore_V_K stage V sp 93.6 0.027 6.8E-07 35.9 1.0 192 15-214 20-237 (261)
179 PRK11448 hsdR type I restricti 93.5 0.29 7.5E-06 28.6 6.3 41 31-72 436-476 (1126)
180 PRK11889 flhF flagellar biosyn 93.5 0.068 1.7E-06 33.1 3.0 48 34-81 244-291 (436)
181 cd01428 ADK Adenylate kinase ( 93.5 0.091 2.3E-06 32.2 3.6 32 34-66 2-34 (194)
182 PRK06696 uridine kinase; Valid 93.5 0.27 6.8E-06 28.9 6.0 34 26-60 19-55 (227)
183 KOG0741 consensus 93.4 0.089 2.3E-06 32.2 3.5 55 22-76 527-586 (744)
184 COG1199 DinG Rad3-related DNA 93.4 0.13 3.2E-06 31.2 4.3 53 30-85 33-86 (654)
185 TIGR01242 26Sp45 26S proteasom 93.4 0.043 1.1E-06 34.5 1.9 46 26-82 151-196 (364)
186 TIGR03015 pepcterm_ATPase puta 93.4 0.096 2.5E-06 32.0 3.6 55 29-87 41-96 (269)
187 KOG0924 consensus 93.4 0.082 2.1E-06 32.5 3.3 55 30-87 370-433 (1042)
188 TIGR00064 ftsY signal recognit 93.4 0.11 2.9E-06 31.5 3.9 56 25-83 74-134 (284)
189 COG0556 UvrB Helicase subunit 93.3 0.05 1.3E-06 34.0 2.1 69 17-91 11-86 (663)
190 PRK08084 DNA replication initi 93.3 0.18 4.7E-06 30.0 4.9 39 29-70 43-81 (235)
191 PRK00771 signal recognition pa 93.3 0.12 3E-06 31.4 3.9 52 34-86 100-151 (433)
192 KOG0744 consensus 93.2 0.071 1.8E-06 33.0 2.7 88 1-88 144-247 (423)
193 KOG0727 consensus 93.2 0.1 2.5E-06 31.9 3.4 126 7-135 164-293 (408)
194 TIGR00602 rad24 checkpoint pro 93.2 0.053 1.3E-06 33.8 2.0 45 12-56 97-143 (670)
195 PRK06995 flhF flagellar biosyn 93.2 0.097 2.5E-06 32.0 3.3 34 34-69 179-213 (404)
196 COG1419 FlhF Flagellar GTP-bin 93.1 0.14 3.5E-06 30.9 4.1 45 11-56 184-228 (407)
197 KOG0327 consensus 93.1 0.22 5.7E-06 29.4 5.1 65 18-86 48-114 (397)
198 COG1125 OpuBA ABC-type proline 93.1 0.29 7.5E-06 28.6 5.7 68 30-102 25-97 (309)
199 PRK09270 frcK putative fructos 93.1 0.14 3.5E-06 30.9 4.1 30 28-58 29-60 (230)
200 PRK10867 signal recognition pa 93.1 0.094 2.4E-06 32.1 3.2 76 11-87 80-156 (453)
201 COG4096 HsdR Type I site-speci 93.1 0.29 7.4E-06 28.7 5.6 48 31-79 185-232 (875)
202 pfam05876 Terminase_GpA Phage 93.0 0.12 3E-06 31.4 3.6 53 32-86 34-87 (552)
203 KOG1532 consensus 93.0 0.11 2.8E-06 31.6 3.4 32 30-61 16-49 (366)
204 pfam10236 DAP3 Mitochondrial r 93.0 0.14 3.5E-06 30.9 3.9 32 28-59 20-51 (274)
205 pfam01078 Mg_chelatase Magnesi 92.9 0.16 4.1E-06 30.4 4.2 37 31-69 22-58 (207)
206 cd02025 PanK Pantothenate kina 92.9 0.04 1E-06 34.7 1.1 34 35-69 3-36 (220)
207 COG2019 AdkA Archaeal adenylat 92.9 0.18 4.5E-06 30.1 4.4 52 33-84 6-58 (189)
208 COG3854 SpoIIIAA ncharacterize 92.9 0.11 2.9E-06 31.5 3.3 40 32-72 138-180 (308)
209 PRK02496 adk adenylate kinase; 92.8 0.13 3.4E-06 31.0 3.5 36 32-67 2-37 (185)
210 PRK00440 rfc replication facto 92.7 0.11 2.9E-06 31.5 3.2 25 33-57 39-63 (318)
211 PRK13341 recombination factor 92.7 0.17 4.4E-06 30.2 4.1 55 23-83 43-98 (726)
212 PRK09862 putative ATP-dependen 92.7 0.11 2.9E-06 31.5 3.1 47 21-69 196-246 (506)
213 pfam03237 Terminase_6 Terminas 92.7 0.081 2.1E-06 32.5 2.3 53 35-88 1-54 (380)
214 pfam03215 Rad17 Rad17 cell cyc 92.6 0.075 1.9E-06 32.8 2.2 23 33-55 47-69 (490)
215 PRK11131 ATP-dependent RNA hel 92.6 0.15 3.8E-06 30.7 3.7 51 33-84 91-148 (1295)
216 COG0714 MoxR-like ATPases [Gen 92.6 0.16 4E-06 30.6 3.7 39 28-67 40-87 (329)
217 TIGR02858 spore_III_AA stage I 92.6 0.1 2.5E-06 31.9 2.7 27 33-60 125-151 (282)
218 COG1222 RPT1 ATP-dependent 26S 92.6 0.066 1.7E-06 33.1 1.8 95 27-132 181-286 (406)
219 COG0541 Ffh Signal recognition 92.5 0.11 2.9E-06 31.5 3.0 73 11-86 80-154 (451)
220 PRK06761 hypothetical protein; 92.5 0.16 4E-06 30.5 3.7 28 31-59 2-30 (281)
221 KOG0922 consensus 92.5 0.079 2E-06 32.6 2.1 60 28-87 63-128 (674)
222 TIGR00606 rad50 rad50; InterPr 92.5 0.074 1.9E-06 32.8 2.0 29 31-61 27-57 (1328)
223 TIGR03420 DnaA_homol_Hda DnaA 92.4 0.29 7.4E-06 28.6 4.9 29 31-59 38-66 (226)
224 TIGR02237 recomb_radB DNA repa 92.4 0.22 5.5E-06 29.5 4.3 38 35-72 16-64 (223)
225 PRK12422 chromosomal replicati 92.3 0.97 2.5E-05 25.0 14.0 47 32-81 142-191 (455)
226 PRK00279 adk adenylate kinase; 92.3 0.16 4.2E-06 30.4 3.5 34 33-67 2-36 (215)
227 PRK13974 thymidylate kinase; P 92.3 0.12 3E-06 31.4 2.7 53 34-86 6-58 (212)
228 PRK09376 rho transcription ter 92.3 0.2 5.1E-06 29.8 3.9 27 31-58 169-195 (416)
229 TIGR01359 UMP_CMP_kin_fam UMP- 92.2 0.065 1.7E-06 33.2 1.4 22 34-55 2-23 (189)
230 COG5008 PilU Tfp pilus assembl 92.2 0.12 3.1E-06 31.3 2.8 34 23-56 119-152 (375)
231 pfam07726 AAA_3 ATPase family 92.2 0.14 3.6E-06 30.8 3.1 24 33-57 1-24 (131)
232 KOG0923 consensus 92.1 0.12 3.1E-06 31.3 2.7 61 27-87 276-343 (902)
233 TIGR01425 SRP54_euk signal rec 92.1 0.049 1.3E-06 34.1 0.6 51 34-84 124-174 (453)
234 KOG1131 consensus 92.0 0.19 4.8E-06 30.0 3.6 58 24-81 28-90 (755)
235 KOG0738 consensus 92.0 0.12 3E-06 31.4 2.5 91 30-131 244-343 (491)
236 PRK13765 ATP-dependent proteas 92.0 0.17 4.3E-06 30.3 3.3 31 26-57 45-75 (637)
237 PRK08118 topology modulation p 92.0 0.089 2.3E-06 32.2 1.8 55 32-87 2-58 (167)
238 cd01123 Rad51_DMC1_radA Rad51_ 92.0 0.6 1.5E-05 26.4 6.1 26 30-55 17-43 (235)
239 PRK09361 radB DNA repair and r 91.9 0.2 5E-06 29.8 3.5 37 30-69 21-58 (224)
240 KOG0951 consensus 91.8 0.31 8E-06 28.4 4.5 70 20-89 310-391 (1674)
241 KOG1533 consensus 91.8 0.062 1.6E-06 33.3 1.0 22 34-55 5-26 (290)
242 COG0378 HypB Ni2+-binding GTPa 91.8 0.12 3E-06 31.4 2.3 49 31-80 10-61 (202)
243 KOG0741 consensus 91.8 0.4 1E-05 27.7 5.1 51 32-88 257-311 (744)
244 KOG0925 consensus 91.8 1.1 2.8E-05 24.6 8.2 58 30-87 61-124 (699)
245 KOG0354 consensus 91.7 0.095 2.4E-06 32.0 1.7 65 21-86 65-130 (746)
246 COG1203 CRISPR-associated heli 91.7 0.3 7.7E-06 28.5 4.3 57 33-89 216-273 (733)
247 TIGR03600 phage_DnaB phage rep 91.6 1.1 2.9E-05 24.4 7.3 50 34-87 197-247 (421)
248 PRK07261 topology modulation p 91.6 0.1 2.6E-06 31.8 1.8 54 34-88 3-58 (171)
249 PRK10751 molybdopterin-guanine 91.6 0.29 7.3E-06 28.7 4.1 29 33-61 3-32 (170)
250 PRK07246 bifunctional ATP-depe 91.6 0.19 4.9E-06 29.9 3.2 49 29-81 262-310 (820)
251 TIGR02746 TraC-F-type type-IV 91.6 0.22 5.5E-06 29.5 3.4 142 30-195 488-647 (900)
252 cd01394 radB RadB. The archaea 91.5 0.16 4E-06 30.5 2.7 37 30-69 17-54 (218)
253 COG0563 Adk Adenylate kinase a 91.5 0.11 2.7E-06 31.7 1.8 22 33-55 2-23 (178)
254 pfam02534 TraG TraG/TraD famil 91.5 0.069 1.8E-06 33.0 0.9 28 28-57 40-68 (468)
255 CHL00195 ycf46 Ycf46; Provisio 91.5 0.12 3.1E-06 31.2 2.2 56 26-87 254-312 (491)
256 cd01128 rho_factor Transcripti 91.4 0.24 6E-06 29.3 3.5 23 31-54 16-38 (249)
257 PRK04040 adenylate kinase; Pro 91.4 0.2 5.2E-06 29.7 3.2 25 32-57 3-27 (189)
258 PRK08903 hypothetical protein; 91.4 0.46 1.2E-05 27.2 5.0 29 32-60 43-71 (227)
259 COG1474 CDC6 Cdc6-related prot 91.4 0.14 3.5E-06 30.9 2.3 26 31-57 42-67 (366)
260 TIGR02982 heterocyst_DevA ABC 91.3 0.13 3.4E-06 31.1 2.2 30 30-59 30-60 (220)
261 PRK13721 conjugal transfer ATP 91.3 0.31 8E-06 28.4 4.1 31 30-60 473-503 (864)
262 COG2909 MalT ATP-dependent tra 91.3 0.21 5.4E-06 29.6 3.2 22 32-53 38-59 (894)
263 pfam04466 Terminase_3 Phage te 91.3 0.12 2.9E-06 31.4 1.8 44 32-77 3-46 (387)
264 PRK13764 ATPase; Provisional 91.1 0.46 1.2E-05 27.3 4.8 33 27-59 255-287 (605)
265 PRK12402 replication factor C 91.1 0.23 5.8E-06 29.4 3.2 24 32-56 37-60 (337)
266 cd01122 GP4d_helicase GP4d_hel 91.1 0.32 8.2E-06 28.3 4.0 52 31-86 30-82 (271)
267 TIGR03348 VI_IcmF type VI secr 91.1 0.14 3.6E-06 30.8 2.1 18 34-51 114-131 (1169)
268 PRK13946 shikimate kinase; Pro 91.1 0.25 6.4E-06 29.1 3.4 36 20-56 9-44 (195)
269 PRK08939 primosomal protein Dn 91.1 0.28 7.1E-06 28.8 3.6 30 32-61 158-187 (306)
270 PHA02244 ATPase-like protein 91.0 0.38 9.8E-06 27.8 4.3 44 26-78 114-157 (383)
271 PRK06893 DNA replication initi 91.0 0.38 9.7E-06 27.8 4.3 30 30-59 37-67 (229)
272 KOG3079 consensus 91.0 0.37 9.4E-06 27.9 4.1 20 34-53 11-30 (195)
273 KOG1806 consensus 90.9 0.16 4E-06 30.5 2.2 68 17-85 737-806 (1320)
274 pfam00006 ATP-synt_ab ATP synt 90.9 0.3 7.6E-06 28.6 3.6 52 31-84 15-66 (213)
275 PTZ00301 uridine kinase; Provi 90.9 0.13 3.2E-06 31.2 1.7 32 34-66 6-37 (210)
276 TIGR00959 ffh signal recogniti 90.9 0.26 6.7E-06 28.9 3.3 78 10-88 78-160 (439)
277 PRK06620 hypothetical protein; 90.8 0.19 4.9E-06 29.9 2.6 17 32-48 45-61 (214)
278 pfam01935 DUF87 Domain of unkn 90.8 0.32 8.3E-06 28.3 3.7 27 31-57 23-49 (218)
279 COG0630 VirB11 Type IV secreto 90.7 0.29 7.5E-06 28.6 3.5 30 26-56 138-167 (312)
280 COG1224 TIP49 DNA helicase TIP 90.7 0.32 8.3E-06 28.3 3.7 32 30-62 64-95 (450)
281 COG3911 Predicted ATPase [Gene 90.7 0.19 4.7E-06 30.0 2.4 18 33-50 11-28 (183)
282 pfam04310 MukB MukB N-terminal 90.7 1.4 3.6E-05 23.8 7.0 24 35-58 31-54 (227)
283 PRK08727 hypothetical protein; 90.7 0.46 1.2E-05 27.3 4.4 30 30-59 40-69 (233)
284 COG1200 RecG RecG-like helicas 90.6 0.3 7.7E-06 28.5 3.5 56 18-73 262-330 (677)
285 pfam03266 DUF265 Protein of un 90.6 0.36 9.1E-06 28.0 3.8 27 34-61 2-29 (168)
286 PRK09751 putative ATP-dependen 90.6 0.25 6.4E-06 29.1 3.0 53 36-88 1-63 (1490)
287 COG0468 RecA RecA/RadA recombi 90.6 0.51 1.3E-05 26.9 4.6 40 30-69 58-109 (279)
288 pfam03205 MobB Molybdopterin g 90.6 0.35 9E-06 28.1 3.7 28 34-61 3-30 (122)
289 TIGR03117 cas_csf4 CRISPR-asso 90.5 0.49 1.3E-05 27.0 4.5 54 30-86 15-70 (636)
290 pfam00158 Sigma54_activat Sigm 90.5 0.28 7.2E-06 28.7 3.2 34 21-56 12-45 (168)
291 PTZ00088 adenylate kinase 1; P 90.5 0.34 8.6E-06 28.2 3.6 34 33-67 2-36 (225)
292 TIGR02538 type_IV_pilB type IV 90.4 0.24 6E-06 29.3 2.8 26 30-56 325-350 (577)
293 cd01882 BMS1 Bms1. Bms1 is an 90.3 0.36 9.1E-06 28.0 3.6 26 34-59 42-67 (225)
294 PRK12727 flagellar biosynthesi 90.3 0.12 3.2E-06 31.2 1.3 47 31-79 348-398 (557)
295 TIGR01967 DEAH_box_HrpA ATP-de 90.3 0.16 4E-06 30.5 1.8 60 31-91 84-150 (1320)
296 cd02020 CMPK Cytidine monophos 90.3 1 2.6E-05 24.8 6.0 22 34-56 2-23 (147)
297 TIGR02546 III_secr_ATP type II 90.2 0.2 5.1E-06 29.8 2.3 22 31-52 153-174 (430)
298 PRK11608 pspF phage shock prot 90.2 0.35 8.8E-06 28.1 3.5 34 21-56 19-52 (325)
299 KOG0340 consensus 90.1 0.41 1E-05 27.6 3.8 73 10-88 21-97 (442)
300 pfam07724 AAA_2 AAA domain (Cd 90.1 0.35 8.8E-06 28.1 3.4 30 29-59 1-30 (168)
301 pfam06068 TIP49 TIP49 C-termin 90.0 0.4 1E-05 27.6 3.7 31 30-61 49-79 (395)
302 PRK06851 hypothetical protein; 90.0 0.17 4.4E-06 30.2 1.8 32 30-61 30-61 (368)
303 PRK03839 putative kinase; Prov 90.0 0.19 4.9E-06 29.9 2.0 19 34-53 3-21 (180)
304 cd02023 UMPK Uridine monophosp 89.9 0.33 8.3E-06 28.3 3.1 23 34-57 2-24 (198)
305 COG0464 SpoVK ATPases of the A 89.9 1.3 3.4E-05 23.9 6.3 57 29-88 274-330 (494)
306 TIGR02880 cbbX_cfxQ CbbX prote 89.8 0.34 8.7E-06 28.1 3.2 134 8-153 35-182 (284)
307 TIGR02640 gas_vesic_GvpN gas v 89.8 0.31 7.9E-06 28.4 2.9 30 29-59 19-48 (265)
308 TIGR01360 aden_kin_iso1 adenyl 89.8 0.15 3.9E-06 30.6 1.3 26 34-59 6-35 (191)
309 COG1618 Predicted nucleotide k 89.7 0.23 5.9E-06 29.3 2.2 34 32-66 6-40 (179)
310 PRK13695 putative NTPase; Prov 89.7 0.45 1.2E-05 27.3 3.7 28 33-61 5-33 (174)
311 KOG0743 consensus 89.6 0.24 6.2E-06 29.2 2.3 24 32-55 236-259 (457)
312 pfam02702 KdpD Osmosensitive K 89.5 0.51 1.3E-05 26.9 3.8 50 34-83 8-57 (211)
313 TIGR02928 TIGR02928 orc1/cdc6 89.3 0.45 1.1E-05 27.3 3.5 26 31-57 43-68 (383)
314 cd02028 UMPK_like Uridine mono 89.3 0.47 1.2E-05 27.1 3.6 27 34-61 2-29 (179)
315 TIGR01186 proV glycine betaine 89.2 1.6 4.2E-05 23.3 6.3 89 31-122 18-115 (372)
316 COG1102 Cmk Cytidylate kinase 89.1 0.34 8.7E-06 28.1 2.8 16 34-49 3-18 (179)
317 TIGR00176 mobB molybdopterin-g 89.1 0.29 7.5E-06 28.6 2.4 29 35-63 3-31 (165)
318 PRK13898 type IV secretion sys 89.1 0.49 1.2E-05 27.0 3.5 47 31-82 446-492 (800)
319 pfam05707 Zot Zonular occluden 89.0 0.42 1.1E-05 27.5 3.1 26 34-59 3-29 (183)
320 PRK05642 DNA replication initi 88.9 0.68 1.7E-05 26.0 4.2 27 32-59 46-73 (234)
321 PRK13705 plasmid-partitioning 88.9 0.25 6.3E-06 29.1 1.9 28 32-59 104-135 (388)
322 cd01133 F1-ATPase_beta F1 ATP 88.9 0.28 7.2E-06 28.7 2.2 53 31-83 69-121 (274)
323 KOG2227 consensus 88.9 0.58 1.5E-05 26.5 3.8 39 29-67 173-211 (529)
324 PRK13853 type IV secretion sys 88.8 0.51 1.3E-05 26.9 3.5 50 31-82 426-476 (789)
325 TIGR03029 EpsG chain length de 88.7 0.33 8.5E-06 28.2 2.5 26 34-59 107-132 (274)
326 pfam00485 PRK Phosphoribulokin 88.7 0.41 1.1E-05 27.6 2.9 31 34-65 2-33 (196)
327 TIGR01313 therm_gnt_kin carboh 88.6 0.38 9.8E-06 27.8 2.7 23 34-56 1-23 (175)
328 PRK09087 hypothetical protein; 88.5 0.41 1E-05 27.6 2.8 18 31-48 44-61 (226)
329 COG2842 Uncharacterized ATPase 88.5 2 5.1E-05 22.7 7.8 24 30-53 93-116 (297)
330 cd03114 ArgK-like The function 88.5 0.19 4.8E-06 30.0 1.1 24 36-59 4-27 (148)
331 PRK00131 aroK shikimate kinase 88.5 0.33 8.5E-06 28.2 2.3 25 31-56 4-28 (175)
332 KOG3928 consensus 88.4 0.53 1.3E-05 26.8 3.3 36 24-59 170-207 (461)
333 cd01672 TMPK Thymidine monopho 88.4 0.69 1.8E-05 26.0 3.9 27 34-60 3-29 (200)
334 COG4088 Predicted nucleotide k 88.4 0.47 1.2E-05 27.2 3.0 23 34-57 4-26 (261)
335 TIGR03453 partition_RepA plasm 88.3 0.23 5.8E-06 29.4 1.4 29 31-59 101-133 (387)
336 TIGR00446 nop2p NOL1/NOP2/sun 88.3 0.11 2.9E-06 31.5 -0.1 63 7-82 59-122 (284)
337 COG0610 Type I site-specific r 88.3 0.58 1.5E-05 26.5 3.5 95 31-146 273-368 (962)
338 PTZ00112 origin recognition co 88.2 0.5 1.3E-05 27.0 3.1 27 30-57 291-318 (650)
339 PRK13830 conjugal transfer pro 88.1 0.59 1.5E-05 26.5 3.4 48 31-82 456-503 (818)
340 COG3523 IcmF Type VI protein s 87.9 0.25 6.4E-06 29.1 1.4 20 34-53 128-147 (1188)
341 PRK13869 plasmid-partitioning 87.6 0.28 7.1E-06 28.8 1.5 28 32-59 119-150 (405)
342 TIGR00382 clpX ATP-dependent C 87.5 0.4 1E-05 27.7 2.2 26 31-57 152-177 (452)
343 KOG1970 consensus 87.4 0.57 1.4E-05 26.6 3.0 35 14-50 92-129 (634)
344 COG0465 HflB ATP-dependent Zn 87.3 0.72 1.8E-05 25.9 3.5 77 6-87 158-236 (596)
345 PRK07667 uridine kinase; Provi 87.3 0.84 2.1E-05 25.4 3.8 31 29-60 10-43 (190)
346 PRK05595 replicative DNA helic 87.3 2.4 6.1E-05 22.2 6.4 101 34-148 204-311 (444)
347 PRK03731 aroL shikimate kinase 87.2 0.44 1.1E-05 27.3 2.4 25 31-56 2-26 (172)
348 COG5192 BMS1 GTP-binding prote 87.2 0.63 1.6E-05 26.3 3.1 22 34-55 72-93 (1077)
349 COG1875 NYN ribonuclease and A 87.2 0.56 1.4E-05 26.6 2.9 51 17-67 226-281 (436)
350 KOG0926 consensus 87.2 0.77 2E-05 25.7 3.6 65 21-88 259-331 (1172)
351 pfam00625 Guanylate_kin Guanyl 87.1 0.58 1.5E-05 26.5 2.9 21 31-51 1-21 (182)
352 COG1223 Predicted ATPase (AAA+ 87.0 0.41 1E-05 27.6 2.1 19 30-48 150-168 (368)
353 PRK13531 regulatory ATPase Rav 87.0 1 2.6E-05 24.8 4.1 29 28-57 36-64 (498)
354 pfam12340 DUF3638 Protein of u 87.0 2.5 6.3E-05 22.1 7.2 55 31-88 41-95 (229)
355 KOG0987 consensus 87.0 0.41 1E-05 27.6 2.1 67 7-79 108-182 (540)
356 COG1100 GTPase SAR1 and relate 86.9 0.41 1E-05 27.6 2.1 31 32-62 6-36 (219)
357 PRK10917 ATP-dependent DNA hel 86.9 0.78 2E-05 25.6 3.5 55 17-71 256-323 (677)
358 COG1674 FtsK DNA segregation A 86.9 0.97 2.5E-05 24.9 3.9 29 31-59 530-558 (858)
359 PRK05057 aroK shikimate kinase 86.8 0.44 1.1E-05 27.4 2.2 26 31-57 4-29 (172)
360 KOG0729 consensus 86.8 0.39 9.8E-06 27.8 1.8 27 20-46 198-226 (435)
361 KOG0331 consensus 86.7 0.48 1.2E-05 27.1 2.3 59 29-91 126-190 (519)
362 TIGR01243 CDC48 AAA family ATP 86.7 0.41 1E-05 27.6 1.9 30 26-56 235-264 (980)
363 PRK11034 clpA ATP-dependent Cl 86.7 1.6 4.1E-05 23.4 5.0 61 31-92 207-277 (758)
364 PRK00698 tmk thymidylate kinas 86.7 1 2.6E-05 24.8 4.0 29 33-61 5-33 (204)
365 PRK09112 DNA polymerase III su 86.6 2.6 6.6E-05 22.0 8.4 24 34-58 48-72 (352)
366 COG1855 ATPase (PilT family) [ 86.6 1.5 3.7E-05 23.7 4.7 34 26-59 258-291 (604)
367 cd03116 MobB Molybdenum is an 86.6 1.1 2.7E-05 24.7 4.0 27 34-60 4-30 (159)
368 pfam02689 Herpes_Helicase Heli 86.6 1.1 2.9E-05 24.4 4.2 42 34-85 63-106 (801)
369 KOG0730 consensus 86.6 0.61 1.6E-05 26.4 2.8 19 30-48 217-235 (693)
370 pfam00406 ADK Adenylate kinase 86.5 0.52 1.3E-05 26.8 2.4 31 36-67 1-32 (186)
371 PRK13873 conjugal transfer ATP 86.4 0.86 2.2E-05 25.3 3.4 48 31-82 441-488 (815)
372 COG1797 CobB Cobyrinic acid a, 86.4 0.94 2.4E-05 25.0 3.6 27 33-59 1-29 (451)
373 PRK13947 shikimate kinase; Pro 86.3 0.49 1.3E-05 27.0 2.2 25 32-57 2-26 (171)
374 KOG0780 consensus 86.3 0.41 1E-05 27.6 1.7 48 34-81 104-151 (483)
375 TIGR01243 CDC48 AAA family ATP 86.3 0.43 1.1E-05 27.4 1.9 60 25-85 569-633 (980)
376 KOG0652 consensus 86.2 0.45 1.1E-05 27.3 1.9 100 28-132 202-306 (424)
377 TIGR00929 VirB4_CagE type IV s 86.2 0.9 2.3E-05 25.2 3.5 52 28-81 513-565 (931)
378 KOG3347 consensus 86.2 0.42 1.1E-05 27.5 1.8 24 32-56 7-31 (176)
379 pfam05872 DUF853 Bacterial pro 86.2 0.8 2E-05 25.6 3.2 57 29-85 19-81 (504)
380 PRK07429 phosphoribulokinase; 86.1 1 2.6E-05 24.8 3.7 28 29-57 4-33 (331)
381 KOG2228 consensus 86.1 0.84 2.1E-05 25.4 3.3 28 27-54 44-72 (408)
382 COG3842 PotA ABC-type spermidi 86.0 0.52 1.3E-05 26.9 2.2 26 30-56 29-55 (352)
383 PRK08694 consensus 86.0 2.8 7E-05 21.8 7.0 53 31-87 217-271 (468)
384 cd02022 DPCK Dephospho-coenzym 85.9 0.5 1.3E-05 27.0 2.0 15 34-48 2-16 (179)
385 pfam04665 Pox_A32 Poxvirus A32 85.8 0.95 2.4E-05 25.0 3.4 41 33-73 15-72 (241)
386 pfam00071 Ras Ras family. Incl 85.8 0.72 1.8E-05 25.8 2.8 19 34-53 2-20 (162)
387 pfam07088 GvpD GvpD gas vesicl 85.7 0.39 9.8E-06 27.8 1.4 48 29-77 8-64 (484)
388 PRK08233 hypothetical protein; 85.7 0.77 2E-05 25.7 2.9 22 34-56 6-27 (182)
389 PRK13700 conjugal transfer pro 85.7 1 2.7E-05 24.7 3.6 29 31-59 185-213 (732)
390 PRK13973 thymidylate kinase; P 85.5 1.3 3.2E-05 24.2 3.9 28 34-61 6-33 (216)
391 COG5271 MDN1 AAA ATPase contai 85.5 0.7 1.8E-05 25.9 2.6 32 22-53 455-486 (4600)
392 TIGR00956 3a01205 Pleiotropic 85.4 0.51 1.3E-05 26.9 1.9 53 29-83 86-138 (1466)
393 pfam02492 cobW CobW/HypB/UreG, 85.4 0.78 2E-05 25.6 2.8 21 33-53 1-22 (174)
394 KOG0332 consensus 85.4 0.41 1E-05 27.6 1.4 58 28-85 126-183 (477)
395 PRK00080 ruvB Holliday junctio 85.3 0.93 2.4E-05 25.1 3.2 28 29-57 49-76 (328)
396 cd02021 GntK Gluconate kinase 85.2 0.58 1.5E-05 26.5 2.1 21 34-54 2-22 (150)
397 COG0470 HolB ATPase involved i 85.1 0.89 2.3E-05 25.2 3.0 25 33-57 26-50 (325)
398 TIGR02868 CydC ABC transporter 85.1 0.67 1.7E-05 26.1 2.4 69 30-104 386-458 (566)
399 TIGR01187 potA polyamine ABC t 85.1 0.33 8.4E-06 28.2 0.8 19 36-55 1-19 (331)
400 TIGR01526 nadR_NMN_Atrans nico 85.1 1.2 3.1E-05 24.3 3.7 45 32-77 176-220 (346)
401 PRK10923 glnG nitrogen regulat 85.0 0.94 2.4E-05 25.1 3.1 34 21-56 151-184 (469)
402 COG0237 CoaE Dephospho-CoA kin 84.9 0.61 1.6E-05 26.3 2.1 15 34-48 5-19 (201)
403 TIGR03574 selen_PSTK L-seryl-t 84.8 1.4 3.5E-05 23.9 3.8 26 34-59 2-27 (249)
404 PRK13948 shikimate kinase; Pro 84.8 0.7 1.8E-05 26.0 2.4 27 30-57 9-35 (182)
405 PRK13896 cobyrinic acid a,c-di 84.8 1.1 2.8E-05 24.6 3.4 25 35-59 4-30 (432)
406 TIGR01618 phage_P_loop phage n 84.8 0.3 7.7E-06 28.5 0.5 55 32-86 14-79 (229)
407 COG1702 PhoH Phosphate starvat 84.8 0.72 1.8E-05 25.9 2.4 60 19-83 128-190 (348)
408 COG2205 KdpD Osmosensitive K+ 84.8 1.3 3.4E-05 24.0 3.8 126 19-144 5-153 (890)
409 TIGR02903 spore_lon_C ATP-depe 84.8 0.87 2.2E-05 25.3 2.8 19 29-47 173-192 (616)
410 KOG0342 consensus 84.7 1 2.6E-05 24.8 3.2 67 20-86 106-178 (543)
411 cd03234 ABCG_White The White s 84.7 0.63 1.6E-05 26.3 2.1 26 30-56 32-57 (226)
412 PRK05563 DNA polymerase III su 84.6 0.67 1.7E-05 26.1 2.2 25 31-56 37-62 (541)
413 PRK03846 adenylylsulfate kinas 84.6 3.2 8.1E-05 21.3 8.0 67 21-87 12-90 (198)
414 PRK00300 gmk guanylate kinase; 84.6 0.68 1.7E-05 26.1 2.2 20 31-50 6-26 (208)
415 COG1936 Predicted nucleotide k 84.5 0.59 1.5E-05 26.5 1.9 19 34-53 3-21 (180)
416 smart00072 GuKc Guanylate kina 84.4 1.1 2.7E-05 24.7 3.1 24 31-54 2-25 (184)
417 COG0572 Udk Uridine kinase [Nu 84.4 1.1 2.8E-05 24.6 3.2 31 34-69 11-41 (218)
418 KOG0651 consensus 84.3 0.65 1.7E-05 26.2 2.0 58 28-88 163-220 (388)
419 KOG1942 consensus 84.3 3.3 8.4E-05 21.2 5.6 31 30-61 63-93 (456)
420 PRK13891 conjugal transfer pro 84.3 1.2 3E-05 24.3 3.4 26 31-56 488-513 (852)
421 TIGR01081 mpl UDP-N-acetylmura 84.2 0.96 2.5E-05 25.0 2.8 36 31-67 100-137 (459)
422 cd03230 ABC_DR_subfamily_A Thi 84.2 0.94 2.4E-05 25.0 2.8 26 30-56 24-50 (173)
423 pfam06309 Torsin Torsin. This 84.1 1.6 4.1E-05 23.4 4.0 33 29-61 49-83 (127)
424 TIGR00968 3a0106s01 sulfate AB 84.0 0.74 1.9E-05 25.8 2.2 19 30-48 24-43 (241)
425 PRK05748 replicative DNA helic 84.0 3.4 8.6E-05 21.1 7.3 50 34-87 206-256 (448)
426 cd04160 Arfrp1 Arfrp1 subfamil 83.8 0.8 2E-05 25.5 2.3 32 33-65 1-34 (167)
427 cd03213 ABCG_EPDR ABCG transpo 83.7 0.71 1.8E-05 25.9 2.0 21 30-50 34-54 (194)
428 KOG0742 consensus 83.6 0.41 1E-05 27.6 0.7 21 28-48 381-401 (630)
429 PRK05201 hslU ATP-dependent pr 83.6 3.5 8.9E-05 21.0 7.2 26 31-57 50-75 (442)
430 cd04157 Arl6 Arl6 subfamily. 83.6 0.83 2.1E-05 25.4 2.3 16 33-48 1-16 (162)
431 COG0305 DnaB Replicative DNA h 83.5 3.5 9E-05 21.0 5.9 103 33-148 198-306 (435)
432 KOG0735 consensus 83.5 1.9 4.8E-05 22.9 4.1 29 28-57 428-456 (952)
433 KOG0065 consensus 83.5 0.81 2.1E-05 25.5 2.2 27 29-55 139-165 (1391)
434 pfam12128 DUF3584 Protein of u 83.4 1.4 3.6E-05 23.8 3.4 38 28-68 14-51 (1192)
435 cd03253 ABCC_ATM1_transporter 83.4 0.85 2.2E-05 25.4 2.3 26 30-56 26-51 (236)
436 COG1158 Rho Transcription term 83.3 0.61 1.6E-05 26.4 1.6 28 31-59 173-200 (422)
437 COG2255 RuvB Holliday junction 83.2 0.82 2.1E-05 25.4 2.2 39 29-68 50-97 (332)
438 PRK05480 uridine kinase; Provi 83.2 1.2 3.2E-05 24.2 3.1 27 30-57 3-31 (209)
439 TIGR03263 guanyl_kin guanylate 83.2 1.3 3.2E-05 24.1 3.1 18 33-50 3-20 (180)
440 PRK10787 DNA-binding ATP-depen 83.1 1.9 4.9E-05 22.9 4.0 74 29-105 346-429 (784)
441 COG1111 MPH1 ERCC4-like helica 83.1 2.2 5.6E-05 22.5 4.3 61 23-86 20-82 (542)
442 cd00071 GMPK Guanosine monopho 83.0 0.86 2.2E-05 25.3 2.2 17 34-50 2-18 (137)
443 TIGR01407 dinG_rel DnaQ family 83.0 0.92 2.3E-05 25.1 2.3 72 17-91 259-339 (944)
444 PRK06547 hypothetical protein; 82.9 2 5.1E-05 22.7 4.1 25 29-54 10-37 (184)
445 PRK09280 F0F1 ATP synthase sub 82.8 1.3 3.3E-05 24.0 3.1 26 31-56 145-170 (466)
446 PRK05541 adenylylsulfate kinas 82.8 1.9 4.9E-05 22.8 3.9 53 33-85 9-70 (176)
447 TIGR00618 sbcc exonuclease Sbc 82.7 1.5 3.9E-05 23.6 3.4 52 31-83 30-89 (1063)
448 PRK10365 transcriptional regul 82.5 1.5 3.8E-05 23.7 3.3 33 22-56 153-185 (441)
449 cd00464 SK Shikimate kinase (S 82.5 0.89 2.3E-05 25.2 2.1 24 33-57 1-24 (154)
450 pfam08423 Rad51 Rad51. Rad51 i 82.5 2.3 6E-05 22.3 4.3 40 30-69 41-98 (261)
451 PRK10078 ribose 1,5-bisphospho 82.5 0.91 2.3E-05 25.1 2.2 19 32-50 3-21 (184)
452 PRK07263 consensus 82.5 3.8 9.8E-05 20.7 6.2 51 32-86 203-255 (453)
453 PRK12678 transcription termina 82.4 0.66 1.7E-05 26.1 1.4 27 31-58 411-437 (667)
454 cd03232 ABC_PDR_domain2 The pl 82.4 0.9 2.3E-05 25.2 2.1 20 30-49 32-51 (192)
455 cd01136 ATPase_flagellum-secre 82.4 0.91 2.3E-05 25.1 2.2 23 31-54 69-91 (326)
456 pfam07015 VirC1 VirC1 protein. 82.4 1.9 4.9E-05 22.9 3.8 28 33-60 2-31 (231)
457 PHA02519 plasmid partition pro 82.4 0.56 1.4E-05 26.6 1.1 30 30-59 101-135 (387)
458 cd01393 recA_like RecA is a b 82.3 1.9 4.9E-05 22.8 3.8 30 30-59 17-47 (226)
459 COG1126 GlnQ ABC-type polar am 82.3 0.94 2.4E-05 25.0 2.2 62 31-96 27-93 (240)
460 PRK06321 replicative DNA helic 82.3 3.9 1E-04 20.7 6.3 50 34-87 229-279 (472)
461 COG4178 ABC-type uncharacteriz 82.3 1 2.6E-05 24.8 2.3 25 30-55 418-442 (604)
462 TIGR03185 DNA_S_dndD DNA sulfu 82.2 2.2 5.5E-05 22.5 4.0 28 29-57 25-53 (650)
463 COG4240 Predicted kinase [Gene 82.2 2.2 5.5E-05 22.5 4.0 32 29-60 46-79 (300)
464 PRK07933 thymidylate kinase; V 82.2 2 5.2E-05 22.7 3.9 35 34-71 3-37 (213)
465 pfam00910 RNA_helicase RNA hel 82.2 1.4 3.6E-05 23.8 3.0 23 34-56 1-23 (105)
466 TIGR03305 alt_F1F0_F1_bet alte 82.1 1.2 3.1E-05 24.3 2.7 27 31-57 138-164 (449)
467 PRK07270 DNA polymerase III su 82.1 4 0.0001 20.7 8.6 25 31-56 36-61 (557)
468 cd04153 Arl5_Arl8 Arl5/Arl8 su 82.1 0.98 2.5E-05 24.9 2.2 18 33-50 17-34 (174)
469 COG0125 Tmk Thymidylate kinase 82.0 2 5.2E-05 22.7 3.8 27 34-60 6-32 (208)
470 PRK04132 replication factor C 81.9 0.65 1.7E-05 26.2 1.2 18 33-50 48-65 (863)
471 PRK08769 DNA polymerase III su 81.9 1.8 4.6E-05 23.1 3.5 30 33-62 28-57 (319)
472 cd04155 Arl3 Arl3 subfamily. 81.9 1 2.6E-05 24.8 2.2 22 31-53 14-35 (173)
473 COG3839 MalK ABC-type sugar tr 81.9 0.99 2.5E-05 24.9 2.2 26 31-57 28-54 (338)
474 COG1763 MobB Molybdopterin-gua 81.8 1.6 4E-05 23.5 3.1 27 34-60 5-31 (161)
475 cd00878 Arf_Arl Arf (ADP-ribos 81.7 1 2.6E-05 24.8 2.2 18 34-52 2-19 (158)
476 TIGR02524 dot_icm_DotB Dot/Icm 81.7 2.4 6.1E-05 22.2 4.1 71 22-92 124-204 (358)
477 KOG1514 consensus 81.6 1 2.6E-05 24.8 2.1 27 30-56 420-447 (767)
478 PRK05896 DNA polymerase III su 81.6 4.1 0.00011 20.5 5.7 24 32-56 39-62 (613)
479 PRK13543 cytochrome c biogenes 81.5 1 2.7E-05 24.7 2.2 26 30-56 36-61 (214)
480 cd00544 CobU Adenosylcobinamid 81.5 0.58 1.5E-05 26.5 0.9 49 34-88 2-50 (169)
481 KOG4284 consensus 81.5 0.22 5.5E-06 29.5 -1.3 56 32-87 63-118 (980)
482 TIGR03265 PhnT2 putative 2-ami 81.5 0.96 2.4E-05 25.0 2.0 26 30-56 28-54 (353)
483 KOG1534 consensus 81.5 1.5 3.9E-05 23.6 3.0 48 33-83 5-59 (273)
484 cd01372 KISc_KIF4 Kinesin moto 81.4 0.54 1.4E-05 26.7 0.7 19 31-49 74-92 (341)
485 pfam09140 MipZ ATPase MipZ. Mi 81.4 0.62 1.6E-05 26.3 1.0 26 34-59 2-29 (261)
486 PRK11388 DNA-binding transcrip 81.4 1.8 4.6E-05 23.1 3.4 22 25-46 342-363 (639)
487 TIGR00595 priA primosomal prot 81.4 0.93 2.4E-05 25.1 1.9 52 35-89 1-52 (524)
488 pfam03308 ArgK ArgK protein. T 81.4 4.2 0.00011 20.5 5.6 26 34-59 32-57 (267)
489 PRK13477 bifunctional pantoate 81.3 0.88 2.3E-05 25.2 1.7 27 28-55 280-307 (512)
490 cd01369 KISc_KHC_KIF5 Kinesin 81.2 0.49 1.2E-05 27.1 0.4 20 31-50 77-96 (325)
491 cd03254 ABCC_Glucan_exporter_l 81.2 1.1 2.8E-05 24.6 2.2 26 30-56 28-53 (229)
492 cd03295 ABC_OpuCA_Osmoprotecti 81.2 0.97 2.5E-05 25.0 1.9 67 31-102 27-97 (242)
493 pfam01583 APS_kinase Adenylyls 81.1 2.4 6.2E-05 22.1 4.0 53 34-86 5-67 (157)
494 cd03300 ABC_PotA_N PotA is an 81.1 1.1 2.7E-05 24.6 2.1 25 31-56 26-50 (232)
495 PRK01184 hypothetical protein; 81.0 1 2.6E-05 24.8 2.0 39 34-81 4-42 (183)
496 CHL00060 atpB ATP synthase CF1 81.0 1.6 4.1E-05 23.4 3.0 25 31-55 155-179 (480)
497 KOG0242 consensus 80.9 0.5 1.3E-05 27.0 0.4 47 5-51 59-107 (675)
498 COG1341 Predicted GTPase or GT 80.9 3 7.5E-05 21.5 4.3 52 8-59 50-101 (398)
499 cd03261 ABC_Org_Solvent_Resist 80.9 1.1 2.8E-05 24.5 2.1 59 30-89 25-86 (235)
500 PRK06217 hypothetical protein; 80.8 1.8 4.7E-05 23.0 3.2 48 32-83 2-57 (185)
No 1
>TIGR02784 addA_alphas double-strand break repair helicase AddA; InterPro: IPR014151 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the alphaproteobacteria and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=100.00 E-value=4.5e-43 Score=322.66 Aligned_cols=215 Identities=46% Similarity=0.746 Sum_probs=199.5
Q ss_pred HHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHH
Q ss_conf 899998276888799848889967999999999982478988956677687899999999999967752167-4221464
Q 537021.9.peg.4 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS-DEILSAE 100 (242)
Q Consensus 22 ~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~-~~~~~~~ 100 (242)
+.|++|+||..|++|+|.||||||+||+.||+|||.+|++|++||||||||+||+||.+||=++|++|+... +......
T Consensus 1 ~~Q~~AaDP~~S~WVSANAGSGKTHVLt~RViRLLL~G~~P~~ILCLTYTKAAAAeMq~RvF~rL~~Wa~L~nD~~L~~~ 80 (1190)
T TIGR02784 1 DRQAQAADPAASAWVSANAGSGKTHVLTQRVIRLLLAGTEPSKILCLTYTKAAAAEMQNRVFKRLGEWAVLDNDADLRAR 80 (1190)
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 94120037774701243167885224899999986178783100020555899999999987551044438886889999
Q ss_pred HHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99731---479997899999999999983100132111799998755542897588999851683789999999999999
Q 537021.9.peg.4 101 ITKIQ---GKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 (242)
Q Consensus 101 l~~~~---~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d~~~~~~l~~~~~~~~~ 177 (242)
|..+. ...++...+.++|+|+..+|++|+++.|.|||+||..+|++||.|.|++++|+++||-....+++++++.++
T Consensus 81 l~~LeGe~~~~~da~~L~~AR~LFArALETPGGLKIQTIHAFCe~LL~~FPLEAnv~~~F~~~DDr~~A~l~~~arr~ll 160 (1190)
T TIGR02784 81 LEALEGEAGKRPDAAKLAEARRLFARALETPGGLKIQTIHAFCEALLHQFPLEANVAGHFSVIDDRAAAALLEEARRELL 160 (1190)
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHH
T ss_conf 99842546888888899999899999741787761577799999885207751378988533026899999999999997
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98432780359999999994169677999999999848999999866208999858999974
Q 537021.9.peg.4 178 ASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 (242)
Q Consensus 178 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~e~~l~ 239 (242)
.......+..+..++..+.+..++.+++.++.++...|+.+..+.. .....+..++.++
T Consensus 161 ~~~~~~~d~~~~~a~a~~l~~~~e~gl~~ll~ei~~~R~~~~~fl~---~~~~~~~~~~~l~ 219 (1190)
T TIGR02784 161 AGAAAPPDPALAEALATVLEAAGETGLEALLAEIVAKRDALSAFLD---EAGGAEGAEADLR 219 (1190)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_conf 2303788405899999999871655878999999961688878999---8640235899999
No 2
>TIGR02785 addA_Gpos recombination helicase AddA; InterPro: IPR014152 AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologues between the Firmicutes and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species..
Probab=100.00 E-value=1.8e-35 Score=269.25 Aligned_cols=211 Identities=22% Similarity=0.266 Sum_probs=171.4
Q ss_pred HCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 509489999827688879984888996799999999998247---89889566776878999999999999677521674
Q 537021.9.peg.4 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 (242)
Q Consensus 18 ~~~~~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g---~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~ 94 (242)
.+|++|+.+|.+.+.++||.|+||||||+|||+||..-|.+| |+.++.||+||||+||.|||+||.++|.......+
T Consensus 1 ~wT~~Q~~AI~~~G~nILVsAsAGSGKTaVLVERii~~i~~gE~pvdiDrLLVVTFTnaAA~EMK~Ri~~~l~k~l~~~~ 80 (1295)
T TIGR02785 1 QWTDEQWQAIYDRGQNILVSASAGSGKTAVLVERIIKKILRGENPVDIDRLLVVTFTNAAAREMKERIEEALQKELAQEP 80 (1295)
T ss_pred CCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 98788899996368864765322666147899999999647887702021036788899999999999999999743688
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CHHHHHHHHHHH
Q ss_conf 2214649973147999789999999999998310013211179999875554289758899985168-378999999999
Q 537021.9.peg.4 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIAD-EEQSKKLIEEAK 173 (242)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d-~~~~~~l~~~~~ 173 (242)
..+|...-.......+...|...+.+.|+|+||||.+++|+|++.++++|+|+|++ +.+...|.++++
T Consensus 81 -----------~d~P~~~ta~~~~~hl~~QL~lL~~A~ISTlhsFCL~Vir~~YYllDlDP~FRil~nd~e~~LL~~E~~ 149 (1295)
T TIGR02785 81 -----------DDDPERRTAVDNSKHLRRQLALLNKANISTLHSFCLKVIRKHYYLLDLDPSFRILTNDTEELLLLKEVV 149 (1295)
T ss_pred -----------CCCCHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf -----------887123204437899999996446765104578999997666043553788765775678889887579
Q ss_pred HHHHHHHHCCCH-HHHHHHHHHHHH-HCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998432780-359999999994-1696779999999998------48999999866208999858999974
Q 537021.9.peg.4 174 KSTLASIMLDNN-EELKKAFYEILE-ISNDEDIETLISDIIS------NRTALKLIFFFFSYLWRRKIIEKSLW 239 (242)
Q Consensus 174 ~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~~~~l~~~l~------~~~~~~~~~~~~~~~~~r~~~e~~l~ 239 (242)
.++++......+ ..+......+.. ..++.++.+++-.++. ++..|..-.............++.+|
T Consensus 150 ~d~~E~~y~~~d~~~F~~L~~~f~~rDR~D~~L~~li~~lY~F~~a~P~Pe~WL~~l~~~Y~V~~~~~~e~~~~ 223 (1295)
T TIGR02785 150 DDVLEEEYYKEDNEAFFELVDNFSGRDRSDDGLRDLILKLYDFARATPNPEKWLNKLAEAYEVKEDFLIESKLL 223 (1295)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 99999985201515899999865078977012899999999997449986788862655422340467888999
No 3
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA; InterPro: IPR005751 The DNA helicase PcrA is found mainly in Gram-positive bacteria and belongs to a superfamily of helicases, together with Rep and UvrD helicases from Escherichia coli. The action of the 3'5' bacterial DNA helicase is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilising the duplex and separating the two strands in an active process .; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=100.00 E-value=5.3e-36 Score=272.94 Aligned_cols=205 Identities=20% Similarity=0.259 Sum_probs=135.8
Q ss_pred HHCCCHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCC
Q ss_conf 350948999982-76888799848889967999999999982-4789889566776878999999999999677-52167
Q 537021.9.peg.4 17 ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITA-WSHLS 93 (242)
Q Consensus 17 ~~~~~~qq~~a~-~~~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~-~~~~~ 93 (242)
+..+|+.|+.|+ |+.||+||.||||||||.+|++||+|||. +.|.|.+|||||||||||+||||||.+.++. |+...
T Consensus 2 l~~LN~~Q~~AV~tt~GPLLi~AGAGSGKTRVLThRIA~L~~e~~v~P~nILAiTFTNKAArEMkERv~~L~g~awaqqe 81 (811)
T TIGR01073 2 LAGLNPEQREAVKTTEGPLLIMAGAGSGKTRVLTHRIAHLLAEKNVAPWNILAITFTNKAAREMKERVEKLLGPAWAQQE 81 (811)
T ss_pred CCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 01024899999730378410101378873105789999999722369850465532205316789999998524665457
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH----HCC--CCCCCCCCCCHHHH
Q ss_conf 42214649973147999789999999999998-310013211179999875554289----758--89998516837899
Q 537021.9.peg.4 94 DEILSAEITKIQGKKPNKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQQFPL----EAN--ITSHFAIADEEQSK 166 (242)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l-~~~~~~~i~Ti~~f~~~ilr~~~~----~~g--l~~~f~i~d~~~~~ 166 (242)
+..--..+.+ -+.+.++...- ..-..+||+||||.|.||||+-.. .+| +..+|+|+|..|+.
T Consensus 82 fsqrwellGk-----------yeqkqllsrvyk~~a~~~WisTFHS~cvRILRrdid~~qd~~Grr~~~~FsI~D~~Dq~ 150 (811)
T TIGR01073 82 FSQRWELLGK-----------YEQKQLLSRVYKDVAEDIWISTFHSMCVRILRRDIDKLQDRIGRRINRNFSIIDTSDQL 150 (811)
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 7678887434-----------66789999988652142323038999999888888889876211454157611178889
Q ss_pred HHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHH
Q ss_conf 99999999-9999843278035999999999416967799999999984-89--999998662089998589
Q 537021.9.peg.4 167 KLIEEAKK-STLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN-RT--ALKLIFFFFSYLWRRKII 234 (242)
Q Consensus 167 ~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~-~~--~~~~~~~~~~~~~~r~~~ 234 (242)
.+++.++. ..--+....++..+.-.+...++..-. .++.....-+. .+ .-..|..||..+.+.+.+
T Consensus 151 ~l~K~i~~~~~dlD~Kkf~Pr~i~~~IS~~KN~l~~--P~~~~~~a~~~P~~~~va~VY~~YQ~~L~~n~~L 220 (811)
T TIGR01073 151 SLMKDIVKKDKDLDPKKFEPRSILGTISNAKNELLS--PEDFAKEATNYPFEKVVAEVYAEYQKQLLRNNAL 220 (811)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC--HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999744204777778850125546766514788--6899973068878889999999999998761478
No 4
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=100.00 E-value=6.4e-33 Score=251.25 Aligned_cols=127 Identities=32% Similarity=0.484 Sum_probs=111.4
Q ss_pred HHHHHHHCCCHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89732350948999982-76888799848889967999999999982-47898895667768789999999999996775
Q 537021.9.peg.4 12 ETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 (242)
Q Consensus 12 ~~~~~~~~~~~qq~~a~-~~~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~ 89 (242)
.+-.+++.+|++|+.|+ ++.||+||+||||||||+||++||++||. .|++|++||++|||||||+||++||.+.++..
T Consensus 2 ~~~~~l~~LN~~Q~~AV~~~~g~~lV~AGaGSGKT~vL~~Ria~Li~~~gv~p~~ILalTFTnkAA~Emk~Rl~~~l~~~ 81 (722)
T PRK11773 2 DVSYLLDSLNDKQREAVAAPLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSILAVTFTNKAAAEMRHRIEQLLGTS 81 (722)
T ss_pred CHHHHHHHCCHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 87899782699999998099998799973871599999999999998299987882898458999999999999871777
Q ss_pred HCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 21674221464997314799978999999999999831001321117999987555428975889998516837899999
Q 537021.9.peg.4 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 (242)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d~~~~~~l~ 169 (242)
...++|+||||||.+++|.++...|++++|.|+|+.++..++
T Consensus 82 --------------------------------------~~~~~i~TfHSfc~~iLr~~~~~~g~~~~f~I~d~~d~~~l~ 123 (722)
T PRK11773 82 --------------------------------------QGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDDQLRLL 123 (722)
T ss_pred --------------------------------------CCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHH
T ss_conf --------------------------------------788889729999999999969983989998787689999999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q 537021.9.peg.4 170 EEAKKST 176 (242)
Q Consensus 170 ~~~~~~~ 176 (242)
++++...
T Consensus 124 k~~~~~~ 130 (722)
T PRK11773 124 KRLIKAL 130 (722)
T ss_pred HHHHHHC
T ss_conf 9999976
No 5
>TIGR01075 uvrD DNA helicase II; InterPro: IPR005753 The SOS response is required for efficient nucleotide excision repair (NER) of the major ultraviolet light (UV) induced DNA lesions. The expression of three NER genes, uvrA, uvrB, and uvrD, is upregulated as part of the SOS response. UvrD differs from the others in that it is not involved in lesion recognition but rather in promoting the post-incision steps of NER, including turnover of the UvrBC incision complex . The form of the UvrD helicase with optimal helicase activity is oligomeric with at least two sites for binding the DNA substrate, where one site contacts regions of the 3'-ssDNA tail that are distal from the single-stranded/double-stranded DNA junction.; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=99.98 E-value=5.6e-33 Score=251.70 Aligned_cols=182 Identities=26% Similarity=0.357 Sum_probs=132.6
Q ss_pred HHHCCCHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 23509489999827-6888799848889967999999999982-478988956677687899999999999967752167
Q 537021.9.peg.4 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 (242)
Q Consensus 16 ~~~~~~~qq~~a~~-~~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~ 93 (242)
+|+.+|+.|+-|+. |.++.||+||||||||.+||+||+||+. ++++|-+|++||||||||+||+.||...+.....
T Consensus 1 lLd~LN~~QreaVaap~~~~LvLAGAGSGKTRVL~hRIaWL~~v~~~s~~SiMAVTFTNKAA~Em~~Ri~~~~~~~~~-- 78 (741)
T TIGR01075 1 LLDGLNDKQREAVAAPPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIEALLRKSAR-- 78 (741)
T ss_pred CCCCCCHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCC--
T ss_conf 965566577887403422554873068885024788899887407899853563200347899999999998620114--
Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 42214649973147999789999999999998310013211179999875554289758899985168378999999999
Q 537021.9.peg.4 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 (242)
Q Consensus 94 ~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d~~~~~~l~~~~~ 173 (242)
...-+++|+||||+|+|+||.|..+.+||.+|+|+|.+|+.+|+++.+
T Consensus 79 --------------------------------~~l~gMW~GTFHglaHRlLR~Hh~Da~LP~~FQilDs~DQlrL~KRli 126 (741)
T TIGR01075 79 --------------------------------HQLFGMWIGTFHGLAHRLLRAHHLDAGLPEDFQILDSDDQLRLIKRLI 126 (741)
T ss_pred --------------------------------CEEEEEECHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHH
T ss_conf --------------------------------325553230577899999986675346861242364065799999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999984327803599999999941696779999999998---4-899999986620899985899
Q 537021.9.peg.4 174 KSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS---N-RTALKLIFFFFSYLWRRKIIE 235 (242)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~---~-~~~~~~~~~~~~~~~~r~~~e 235 (242)
+.+. .++...+++-...+.+...+.+++....+..+ . +...+.|..|++.|.+-+.+|
T Consensus 127 k~~n----~~e~~~pPrq~~W~IN~qKdeGlRp~~i~~~~~d~~~~~~~~~Y~~Yq~~C~RaGlVD 188 (741)
T TIGR01075 127 KSLN----LDEKQFPPRQAMWYINNQKDEGLRPEHIEAFDNDPVERTWIKIYAEYQEACDRAGLVD 188 (741)
T ss_pred HHCC----CCCCCCCCHHHHHCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 8638----7633367134420103665678883235776777689999999999875306377345
No 6
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=99.97 E-value=6.6e-31 Score=237.12 Aligned_cols=121 Identities=25% Similarity=0.324 Sum_probs=103.7
Q ss_pred CCHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 948999982-768887998488899679999999999824-789889566776878999999999999677521674221
Q 537021.9.peg.4 20 TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 (242)
Q Consensus 20 ~~~qq~~a~-~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~-g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~~~~ 97 (242)
+|++|+.|+ ++.||++|+||||||||+||++||++||.+ |++|++||++|||||||.||++||.+.++..
T Consensus 3 Ln~~Q~~AV~~~~gp~lVlAGaGSGKT~tLt~Ria~Li~~~~v~P~~ILalTFT~kAA~Emk~Rl~~~lg~~-------- 74 (672)
T PRK10919 3 LNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRK-------- 74 (672)
T ss_pred CCHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCC--------
T ss_conf 998999998399999899973855879999999999986689893338544217999999999999771832--------
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 46499731479997899999999999983100132111799998755542897588999851683789999999999999
Q 537021.9.peg.4 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 (242)
Q Consensus 98 ~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d~~~~~~l~~~~~~~~~ 177 (242)
....+.|+||||||.++++.++..+|++++|.|+|+.++..++++.....+
T Consensus 75 -----------------------------~~~~~~i~TFHS~~~~iLr~~~~~lg~~~~f~i~d~~d~~~~~k~~~~~~~ 125 (672)
T PRK10919 75 -----------------------------EARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQLALLKELTEGLI 125 (672)
T ss_pred -----------------------------CCCCCEEECHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHC
T ss_conf -----------------------------137867884899999999998998289999836169999999999998732
No 7
>TIGR01074 rep ATP-dependent DNA helicase Rep; InterPro: IPR005752 RepA hexameric DNA helicase contain ATP-binding domains similar to those seen in monomeric helicases but which are arranged in a ring. There is compelling evidence to suggest that a single ssDNA molecule passes through the centre of the hexameric ring. Activity of the enzyme is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilizing the duplex and separating the two strands in an active process ; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=99.97 E-value=4.6e-30 Score=231.16 Aligned_cols=124 Identities=26% Similarity=0.361 Sum_probs=111.6
Q ss_pred HHCCCHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 3509489999827-6888799848889967999999999982-4789889566776878999999999999677521674
Q 537021.9.peg.4 17 ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 (242)
Q Consensus 17 ~~~~~~qq~~a~~-~~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~ 94 (242)
+..+|++|..|+. -+||+||+||||||||.||++.|+|||. -|-+|.+|.|||||||||.|||+|+.+.|+.
T Consensus 1 M~~LNp~Q~~AV~Y~~GPlLVLAGAGSGKT~VI~~KIayLi~~cgY~a~~IaAvTFTNKAA~EMkERVA~~L~~------ 74 (677)
T TIGR01074 1 MSKLNPQQQEAVEYVGGPLLVLAGAGSGKTRVITNKIAYLIQNCGYKAKNIAAVTFTNKAAREMKERVAKTLGK------ 74 (677)
T ss_pred CCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCC------
T ss_conf 98887437999986158714651777786357888999987515878761689735237779999999852265------
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 22146499731479997899999999999983100132111799998755542897588999851683789999999999
Q 537021.9.peg.4 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 (242)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d~~~~~~l~~~~~~ 174 (242)
....++.|+|||+++..|++.-...+|+.++|+|.|+.|+..++++...
T Consensus 75 -------------------------------~~~~GL~isTFH~LGL~Ii~~E~~~lG~K~nFSlFD~~D~~all~eL~~ 123 (677)
T TIGR01074 75 -------------------------------GQAKGLTISTFHTLGLKIIRREHNALGLKSNFSLFDETDQLALLKELLE 123 (677)
T ss_pred -------------------------------CCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf -------------------------------4558544752057338999999986488999642067889999998752
Q ss_pred HHH
Q ss_conf 999
Q 537021.9.peg.4 175 STL 177 (242)
Q Consensus 175 ~~~ 177 (242)
..+
T Consensus 124 ~~~ 126 (677)
T TIGR01074 124 GEL 126 (677)
T ss_pred HHH
T ss_conf 331
No 8
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=99.96 E-value=6.4e-29 Score=223.16 Aligned_cols=178 Identities=33% Similarity=0.422 Sum_probs=143.2
Q ss_pred HCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-
Q ss_conf 50948999982768887998488899679999999999824--789889566776878999999999999677521674-
Q 537021.9.peg.4 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD- 94 (242)
Q Consensus 18 ~~~~~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~--g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~- 94 (242)
+++.+++.++.+++++++|+||||||||+||+.||+++|.. |+.|++|||+|||||||.||++||.+++.++.....
T Consensus 3 ~~~~~~~~~~~~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~~~~~~~~ 82 (1139)
T COG1074 3 DSTEALQPLASPPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLKEALQENDE 82 (1139)
T ss_pred CCHHHHCHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 42544255535866668999668898421699999999972589985572344063888999999999999999870001
Q ss_pred -CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf -2214649973147999789999999999998310013211179999875554289758899985168378999999999
Q 537021.9.peg.4 95 -EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 (242)
Q Consensus 95 -~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d~~~~~~l~~~~~ 173 (242)
......+.. ...........+..++...+...+.+.|.|||+||.++++.++.+.|++..|++.++. ..+..+.+
T Consensus 83 ~~~~~~~l~~--~~~~~~~~~~~a~~~f~~a~~~~~~~~I~Tih~Fc~~~L~~~~~~~~~~~~fe~~~d~--~~l~~e~~ 158 (1139)
T COG1074 83 KLASDDELLE--ALAALIQALIQAIRLFALALETNDEAAIFTIHGFCQRILRQFALEAGISFDFELLEDE--SDLFLELV 158 (1139)
T ss_pred HCCCCCHHHH--HHHHCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCHHCCH--HHHHHHHH
T ss_conf 0001026788--7541431189999999999847785346413889999999847751776542000266--89999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 99999843278035999999999416
Q 537021.9.peg.4 174 KSTLASIMLDNNEELKKAFYEILEIS 199 (242)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (242)
+.++..........+.+.+..+....
T Consensus 159 ~d~~r~~~~~~~~~~~~~v~~~~~~~ 184 (1139)
T COG1074 159 EDFWRRRFYPLPAELAQLVAQLYKFP 184 (1139)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf 99998630468689999999986104
No 9
>PRK13909 putative recombination protein RecB; Provisional
Probab=99.96 E-value=1.3e-28 Score=220.98 Aligned_cols=127 Identities=31% Similarity=0.460 Sum_probs=102.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHH
Q ss_conf 79984888996799999999998247898895667768789999999999996775216742214649973147999789
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD 113 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~ 113 (242)
++|.||||||||+||+.||++||.+|++|++|||+|||||||+|||+||...|..+...........+....... ....
T Consensus 1 l~i~AsAGSGKT~~L~~R~l~Ll~~g~~p~~ILavTFT~kAA~EMk~RI~~~L~~l~~~~~~~~~~~~~~~~~~~-~~~~ 79 (911)
T PRK13909 1 LALKASAGSGKTFALSVRFLALLFKGANPNEILALTFTKKAANEMKERIIDTLLNLEKENKESELNELEEELGLS-KEEL 79 (911)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HHHH
T ss_conf 979976704499999999999973897924487855688999999999999998663054305899999870899-8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 99999999999831001321117999987555428975889998516837
Q 537021.9.peg.4 114 MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE 163 (242)
Q Consensus 114 ~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d~~ 163 (242)
..++...+...+. +.+.|+||||||++++|.++.++|++|+|.+.++.
T Consensus 80 ~~~~~~~~~~~l~--~~~~I~TIhsFc~~ilr~~~~~~gl~~~f~i~~~~ 127 (911)
T PRK13909 80 LNKRDKVYERFLN--SELKISTIDAFFQKILRKFCLNLGLSPDFEVTSSH 127 (911)
T ss_pred HHHHHHHHHHHHC--CCCEEEEHHHHHHHHHHHHHHHHCCCCCCEECCCH
T ss_conf 9999999997514--79869769999999999789982969997557118
No 10
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=99.96 E-value=4.1e-29 Score=224.53 Aligned_cols=119 Identities=31% Similarity=0.489 Sum_probs=101.3
Q ss_pred CCHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 948999982-76888799848889967999999999982-4789889566776878999999999999677521674221
Q 537021.9.peg.4 20 TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 (242)
Q Consensus 20 ~~~qq~~a~-~~~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~~~~ 97 (242)
+|++|+.|+ +++||++|+||||||||+||++|++++|. .|++|++||++|||||||+||++||.+.++..
T Consensus 1 Ln~~Q~~av~~~~~~llV~AgAGSGKT~~L~~Ri~~li~~~~~~p~~IL~lTFT~kAA~Em~~Ri~~~l~~~-------- 72 (494)
T pfam00580 1 LNPEQRKAVTHLGGPLLVLAGAGTGKTRVLTERIAYLILEGGIDPEEILAVTFTNKAAREMKERILKLLGKA-------- 72 (494)
T ss_pred CCHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECHHHHHHHHHHHHHHHCCCC--------
T ss_conf 998899998099999799971870689999999999998189997478767028999999999999873834--------
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4649973147999789999999999998310013211179999875554289758-89998516837899999999999
Q 537021.9.peg.4 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKS 175 (242)
Q Consensus 98 ~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~g-l~~~f~i~d~~~~~~l~~~~~~~ 175 (242)
..+.+.|+||||||.++++.++..+| ++++|.+.|+.+...++++.+..
T Consensus 73 -----------------------------~~~~~~i~T~Hsf~~~iLr~~~~~~g~~~~~f~i~d~~~~~~~~~~~~~~ 122 (494)
T pfam00580 73 -----------------------------EASELNISTFHSFCLRILRKYANRIGDLLPNFSILDELDQLALLKEILKK 122 (494)
T ss_pred -----------------------------CCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf -----------------------------46886785499999999999899837777788216678899999999987
No 11
>PRK10876 recB exonuclease V subunit beta; Provisional
Probab=99.95 E-value=1.9e-26 Score=205.71 Aligned_cols=144 Identities=23% Similarity=0.274 Sum_probs=103.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCHH
Q ss_conf 888799848889967999999999982---------47898895667768789999999999996775216--7422146
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL--SDEILSA 99 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~---------~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~--~~~~~~~ 99 (242)
.|.-||+||||||||+||+.+|+++|. ++++|++|||||||||||+|||+||++++.+.... .......
T Consensus 16 ~G~~LVeASAGTGKT~~La~l~lRLll~~~~~~~~~~pl~id~ILvVTFT~aAA~EMk~RIr~~L~~~~~a~~~~~~~dp 95 (1181)
T PRK10876 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSNIHELRIACLRETTDNP 95 (1181)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 99979887153667899999999998624455456799982819896567899999999999999999998750566888
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 49973147999789999999999998310013211179999875554289758899985168378999999999999998
Q 537021.9.peg.4 100 EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 (242)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d~~~~~~l~~~~~~~~~~~ 179 (242)
.......... ....+...+..++.+++.+.|+||||||+++++.++.++|+.+++.++++.. .+..++...++..
T Consensus 96 ~~~~ll~~~~---d~~~~~~~L~~a~~~ld~A~I~TIHsFC~riLr~~a~e~g~~~~~~l~~de~--~l~~~~~~d~wr~ 170 (1181)
T PRK10876 96 LYARLLEEID---DKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDES--LLRYQACADFWRR 170 (1181)
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCHHHCCCCCCCCCCCCHH--HHHHHHHHHHHHH
T ss_conf 9999998586---7899999999998355888887099999999986999619995335647879--9999999999998
No 12
>PRK11054 helD DNA helicase IV; Provisional
Probab=99.93 E-value=6.6e-26 Score=201.95 Aligned_cols=103 Identities=33% Similarity=0.389 Sum_probs=85.1
Q ss_pred HHHHHHHHH--HCCCHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 888897323--50948999982-7688879984888996799999999998247-8988956677687899999999999
Q 537021.9.peg.4 9 EHSETIDLI--SQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 9 ~~~~~~~~~--~~~~~qq~~a~-~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g-~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
++...+|-+ +++|++|+.|+ ..+.++||+||||||||+||+.|++|||..| ++|++||++|||||||.||++||..
T Consensus 184 ~~~~fF~~~es~PLn~~Qr~Avi~~ed~~LVLAGAGSGKT~vLt~RiayLI~~g~~~P~~ILaLTFT~kAA~EMreRl~~ 263 (684)
T PRK11054 184 EWADFFSQVESSPLNPSQARAVVNGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRKAAEEMDERIRE 263 (684)
T ss_pred HHHHHHHHHCCCCCCHHHHHHEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHEEEEECCHHHHHHHHHHHHH
T ss_conf 99999887417999989995727479964898338997077999999999975999866778686349999999999997
Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9677521674221464997314799978999999999999831001321117999987555428975
Q 537021.9.peg.4 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 (242)
Q Consensus 85 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~ 151 (242)
+++. +.+.++||||||.++++......
T Consensus 264 ~lg~----------------------------------------~~v~~~TFHSlal~ILr~~~~~~ 290 (684)
T PRK11054 264 RLGT----------------------------------------EDITARTFHALALHIIQQGSKKV 290 (684)
T ss_pred HCCC----------------------------------------CCEEEEEHHHHHHHHHHHHCCCC
T ss_conf 5499----------------------------------------98378659999999999844457
No 13
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=99.93 E-value=4.5e-25 Score=196.09 Aligned_cols=121 Identities=33% Similarity=0.485 Sum_probs=103.6
Q ss_pred CCCHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 0948999982-768887998488899679999999999824-78988956677687899999999999967752167422
Q 537021.9.peg.4 19 QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 (242)
Q Consensus 19 ~~~~qq~~a~-~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~-g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~~~ 96 (242)
.+|++|+.|+ ++.||++|+||||||||+||++||++|+.. |++|++||++|||||||.||++|+.+.++..
T Consensus 2 ~Ln~~Q~~av~~~~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~~~------- 74 (655)
T COG0210 2 KLNPEQREAVLHPDGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLGLP------- 74 (655)
T ss_pred CCCHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHEEEEEEEHHHHHHHHHHHHHHHCCC-------
T ss_conf 9998999986188998699957998618999999999987389575771778967699999999999873855-------
Q ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 14649973147999789999999999998310013211179999875554289758899985168378999999999999
Q 537021.9.peg.4 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 (242)
Q Consensus 97 ~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d~~~~~~l~~~~~~~~ 176 (242)
....+.++|+|++|.++++.++...++..+|.++|..+...++++.....
T Consensus 75 ------------------------------~~~~~~v~TfHs~~~~~lr~~~~~~~~~~~f~i~d~~d~~~~~~~~~~~~ 124 (655)
T COG0210 75 ------------------------------AAEGLTVGTFHSFALRILRRHGERLGLNANFTILDSDDQLALIKELLRRE 124 (655)
T ss_pred ------------------------------CCCCEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf ------------------------------44653999834677999999788548666871105200789999998654
No 14
>TIGR00609 recB exodeoxyribonuclease V, beta subunit; InterPro: IPR004586 Exodeoxyribonuclease V, or RecBCD holoenzyme, (3.1.11.5 from EC) is a multifunctional nuclease with potent ATP-dependent exodeoxyribonuclease activity. Ejection of RecD, as occurs at chi recombinational hotspots, cripples exonuclease activity in favor of recombinagenic helicase activity. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. The complex catalyses exonucleolytic cleavage in either the 5' to 3' or 3' to 5' direction to yield 5-phosphooligonucleotides in the presence of ATP. This is the beta subunit .; GO: 0005524 ATP binding, 0008854 exodeoxyribonuclease V activity, 0006281 DNA repair.
Probab=99.91 E-value=2.1e-23 Score=184.38 Aligned_cols=160 Identities=23% Similarity=0.289 Sum_probs=114.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHH-CC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------
Q ss_conf 888799848889967999999999982-47--------898895667768789999999999996775216742------
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLL-AN--------AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE------ 95 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g--------~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~~------ 95 (242)
.|..|++|||||||||||+.-|+|+|. .| ..+++|||||||+||++|||.||++++.+.......
T Consensus 9 ~g~~LiEASAGTGKTFtI~~l~lRlll~~gg~~~F~~~~~v~eiLVvTFT~AAT~ELk~RIr~~i~~a~~~~~~~Giakl 88 (1324)
T TIGR00609 9 NGTFLIEASAGTGKTFTIAALYLRLLLEGGGENAFKRPLTVEEILVVTFTNAATEELKTRIRERIHEALRALKAKGIAKL 88 (1324)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 64068874176148999999999999851512202443461212111222788899889988889999999864573020
Q ss_pred -----------------CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf -----------------214649973147999789999999999998310013211179999875554289758899985
Q 537021.9.peg.4 96 -----------------ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFA 158 (242)
Q Consensus 96 -----------------~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~ 158 (242)
.....+........+..........+..++.++|.+.|.|||+||.++++.|+.+++..-.-.
T Consensus 89 GddtlsdGiaay~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~A~~~~D~a~i~TIHgfC~~~L~~~~f~~~~~f~~~ 168 (1324)
T TIGR00609 89 GDDTLSDGIAAYCEEHEETSDELPELLLEAIQDEKVKQAISRLRLALATLDEAAIYTIHGFCQRMLEQYAFESDEIFEQE 168 (1324)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 32034566899874256688732468888734754889999999999875476644663343566775323203300021
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 1683789999999999999984327803599999
Q 537021.9.peg.4 159 IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 (242)
Q Consensus 159 i~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 192 (242)
+.. +...++.++.+.++...+..-......++
T Consensus 169 l~~--~~~~l~~~~~~df~r~~f~~~~~~~~~~~ 200 (1324)
T TIGR00609 169 LIE--DESLLLAEIVKDFWRRNFYNLPFDIAQIV 200 (1324)
T ss_pred CCC--CHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 035--87799999999999863046646899999
No 15
>KOG2108 consensus
Probab=99.12 E-value=6.1e-11 Score=96.70 Aligned_cols=81 Identities=30% Similarity=0.333 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0788888973235094899998276-888799848889967999999999982-47898895667768789999999999
Q 537021.9.peg.4 6 SFQEHSETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVL 83 (242)
Q Consensus 6 ~~~~~~~~~~~~~~~~~qq~~a~~~-~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~RI~ 83 (242)
++++... .+.+..+.+|+..+.+ .+..=|+||||||||.+++.||+|++. +.++|++|++.||||||+.+|++|+.
T Consensus 2 ~~~~i~d--s~~~~l~~~q~~~~~~~~~~~rviagpgsgkt~~lt~~v~yli~~~~ik~~eI~~~t~tnka~~~~~~~l~ 79 (853)
T KOG2108 2 SNRGIWD--SLYSLLNKSQRFSALSPLRRKRVIAGPGSGKTLVLTERVAYLINFNNIKPDEILINTGTNKAADSIKLNLI 79 (853)
T ss_pred CCCHHHH--HHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 8720667--76665312201554388760203106877852103477778874268888989887468810789998688
Q ss_pred HHHHH
Q ss_conf 99677
Q 537021.9.peg.4 84 EIITA 88 (242)
Q Consensus 84 ~~l~~ 88 (242)
..+..
T Consensus 80 ~il~~ 84 (853)
T KOG2108 80 AILRT 84 (853)
T ss_pred HHHCC
T ss_conf 87537
No 16
>KOG1803 consensus
Probab=99.03 E-value=5.5e-10 Score=89.97 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=55.9
Q ss_pred HHHCCCHHHHHHHCC---C-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 235094899998276---8-8879984888996799999999998247898895667768789999999999
Q 537021.9.peg.4 16 LISQTKSEQLLASDP---T-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 (242)
Q Consensus 16 ~~~~~~~qq~~a~~~---~-~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~ 83 (242)
+-..++++|+.|... . .+.+|.+|||||||+||++.|..++.+| ++||++.+||.|.++|.+|+.
T Consensus 182 ~~~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803 182 FNKNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCEEEHHHHHHHHHHCC---CEEEEECCCHHHHHHHHHHHC
T ss_conf 774323779999999735688357557998884043999999999728---859997673678999998750
No 17
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=98.62 E-value=5.1e-08 Score=76.13 Aligned_cols=119 Identities=15% Similarity=0.136 Sum_probs=72.5
Q ss_pred HHHHHHHC--CCCC-EEEEECCCCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 89999827--6888-799848889967999999999982----4789889566776878999999999999677521674
Q 537021.9.peg.4 22 SEQLLASD--PTRS-AWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 (242)
Q Consensus 22 ~qq~~a~~--~~~~-~lV~A~aGSGKT~tL~~rv~~ll~----~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~ 94 (242)
+.|+.|+. ..++ .||.+|||||||||++..+.-++. .|.+--+|-..++|=|||.-|.+=|..........-.
T Consensus 230 D~Q~~a~~~aL~~~f~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~RL~esl~~~~~~L~~~~~ 309 (753)
T TIGR01447 230 DWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAARLAESLRKAVKKLAAENM 309 (753)
T ss_pred HHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 79999999986087689987988977899999999999989864997404788668447999999999988632234236
Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH---CCCCCCCCCCCCHHH
Q ss_conf 22146499731479997899999999999983100132111799998755--542897---588999851683789
Q 537021.9.peg.4 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM--QQFPLE---ANITSHFAIADEEQS 165 (242)
Q Consensus 95 ~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~il--r~~~~~---~gl~~~f~i~d~~~~ 165 (242)
..+.. + -.--...+.|||.|-.... ....+. --++-+.-|+||.-+
T Consensus 310 -aid~~-------------------~-----~~~~~~~~~TiHrLLG~~~I~~~~fr~h~~N~L~~DVLvvDEaSM 360 (753)
T TIGR01447 310 -AIDED-------------------L-----IAALPSEATTIHRLLGIKPIDTKRFRHHERNPLPLDVLVVDEASM 360 (753)
T ss_pred -CCCHH-------------------H-----HCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCHH
T ss_conf -65879-------------------8-----548720456888861661478767767777889855278706002
No 18
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=98.43 E-value=3.5e-06 Score=63.26 Aligned_cols=70 Identities=26% Similarity=0.318 Sum_probs=54.5
Q ss_pred HHHHHHHHCCCHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHHHHHHH--CCC-CHHHHHHHHHHHHHHHHHHH
Q ss_conf 889732350948999982--76888799848889967999999999982--478-98895667768789999999
Q 537021.9.peg.4 11 SETIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLL--ANA-HPSTLLCLTHTKAAAAEMSH 80 (242)
Q Consensus 11 ~~~~~~~~~~~~qq~~a~--~~~~~~lV~A~aGSGKT~tL~~rv~~ll~--~g~-~P~~IL~lTFT~kAA~El~~ 80 (242)
+.|-|++...+.+|..|. ..+++++|.++||||||++-.+|++||+. +|. .-..||++.+.+--..-+..
T Consensus 204 ~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~ 278 (747)
T COG3973 204 AKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISR 278 (747)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHH
T ss_conf 127789998617677787555787489955888871358899999998535662466865998283899999987
No 19
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.31 E-value=9e-07 Score=67.38 Aligned_cols=66 Identities=23% Similarity=0.283 Sum_probs=48.3
Q ss_pred HHHHH-CC-CCC-EEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99982-76-888-799848889967999999999982-47898895667768789999999999996775
Q 537021.9.peg.4 24 QLLAS-DP-TRS-AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 (242)
Q Consensus 24 q~~a~-~~-~~~-~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~ 89 (242)
|++|+ .+ ..+ .+|.+|||||||||++..++-++. ..-++-+|...++|-|||+-|.|-|...+...
T Consensus 152 Qk~A~a~Al~~~~~vIsGGPGTGKTttV~~lLa~l~~~~~~~~l~I~LaAPTGKAAaRL~Esi~~~~~~l 221 (607)
T PRK10875 152 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQL 221 (607)
T ss_pred HHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999875577899679998778899999999999645899708998822899999999998787534
No 20
>KOG1805 consensus
Probab=98.30 E-value=6.5e-07 Score=68.35 Aligned_cols=67 Identities=16% Similarity=0.185 Sum_probs=57.0
Q ss_pred HHHCCCHHHHHHH----CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2350948999982----768887998488899679999999999824789889566776878999999999999
Q 537021.9.peg.4 16 LISQTKSEQLLAS----DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 16 ~~~~~~~qq~~a~----~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~ 85 (242)
+...+|..|+.|. .+.-..||.+=|||||||||+..|--|+..| .+||..+||+-|++++--++...
T Consensus 666 ~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~g---kkVLLtsyThsAVDNILiKL~~~ 736 (1100)
T KOG1805 666 ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALG---KKVLLTSYTHSAVDNILIKLKGF 736 (1100)
T ss_pred HHHHCCHHHHHHHHHHHHCCCHHEEECCCCCCCHHHHHHHHHHHHHCC---CEEEEEEHHHHHHHHHHHHHHCC
T ss_conf 875318899999999873033220326998981225999999999738---81899850567889999987506
No 21
>KOG1802 consensus
Probab=97.97 E-value=4.6e-06 Score=62.39 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=54.0
Q ss_pred HCCCHHHHHHH-C-CCCCE-EEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 50948999982-7-68887-998488899679999999999824789889566776878999999999999
Q 537021.9.peg.4 18 SQTKSEQLLAS-D-PTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 18 ~~~~~qq~~a~-~-~~~~~-lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~ 85 (242)
.-+|..|..|+ + -.+|+ |+.++||||||-|.+..|.+++.++. ..|||++.+|-|.+.+.+.|.+.
T Consensus 409 pkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~--~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802 409 PKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHA--GPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred HHHCHHHHHHHHHHHCCCCEEEECCCCCCCEEHHHHHHHHHHHHCC--CCEEEECCCCHHHHHHHHHHHHC
T ss_conf 1224678999999975985155469998833116899999998528--95699816500289999999861
No 22
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=97.61 E-value=6.3e-05 Score=54.40 Aligned_cols=76 Identities=17% Similarity=0.134 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHC--CCHHHHHHHC-C--CCCEEEEECCCCCHHHHHHHHHHHHHH-CCC-----C----HHHHHHHHHH
Q ss_conf 7888889732350--9489999827-6--888799848889967999999999982-478-----9----8895667768
Q 537021.9.peg.4 7 FQEHSETIDLISQ--TKSEQLLASD-P--TRSAWVSANAGSGKTHILVQRVLRLLL-ANA-----H----PSTLLCLTHT 71 (242)
Q Consensus 7 ~~~~~~~~~~~~~--~~~qq~~a~~-~--~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~-----~----P~~IL~lTFT 71 (242)
.|+|--..+-... ..+.|+.|.. . .+=+++-+||||||||++=.-+..... .|. + --.|+.+.+|
T Consensus 336 ~Q~hi~eve~~~~~~l~~~Qk~AL~~~~~~Kv~iLTGGPGTGKtT~t~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPT 415 (769)
T TIGR01448 336 LQKHILEVEKKLRLKLSEEQKEALKTAIQDKVVILTGGPGTGKTTITKAIIELYEELKGLDLDKDDYVNDDLPVVLAAPT 415 (769)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 99999986875067706889999999860948998577888616899999999987168775531245677648873774
Q ss_pred HHHHHHHHHHH
Q ss_conf 78999999999
Q 537021.9.peg.4 72 KAAAAEMSHRV 82 (242)
Q Consensus 72 ~kAA~El~~RI 82 (242)
=|||+-|.|-=
T Consensus 416 GrAAkRl~E~T 426 (769)
T TIGR01448 416 GRAAKRLAEVT 426 (769)
T ss_pred HHHHHHCCCCC
T ss_conf 37888511002
No 23
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=97.48 E-value=6.5e-05 Score=54.32 Aligned_cols=72 Identities=22% Similarity=0.170 Sum_probs=56.5
Q ss_pred HHCCCHHHHHH-HCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35094899998-27688879984888996799999999998247898895667768789999999999996775
Q 537021.9.peg.4 17 ISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 (242)
Q Consensus 17 ~~~~~~qq~~a-~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~ 89 (242)
..-.+.|.++| +.+.|+-.|-+-||||||-+|++..+.|-. .-|-.+|++..||+--+.-||+++.+-+-..
T Consensus 161 anfD~~Q~kaa~~~~~G~qrIrGLAGSGKT~~La~Kaa~lh~-knPd~~I~~Tfftk~L~s~~r~lv~~F~f~~ 233 (660)
T COG3972 161 ANFDTDQTKAAFQSGFGKQRIRGLAGSGKTELLAHKAAELHS-KNPDSRIAFTFFTKILASTMRTLVPEFFFMR 233 (660)
T ss_pred HCCCCHHHEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHC-CCCCCEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_conf 523504231446547734652002478730298877789744-7998638998666788899999999999988
No 24
>PRK09694 hypothetical protein; Provisional
Probab=97.46 E-value=0.0037 Score=41.97 Aligned_cols=158 Identities=19% Similarity=0.202 Sum_probs=84.6
Q ss_pred HHCCCHHHHHHHCCCCC--EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 35094899998276888--7998488899679999999999824789889566776878999999999999677521674
Q 537021.9.peg.4 17 ISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 (242)
Q Consensus 17 ~~~~~~qq~~a~~~~~~--~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~ 94 (242)
.++..-|+.+..-|.+| ++|+|+.|+|||..-.....+|...| .-+.+...-+|.+.++.|-+|+.+.+......+.
T Consensus 287 ~~PrplQ~~~~~l~~~PgL~IiEAptG~GKTEAAL~~A~~L~~~~-~~~Gl~faLPT~ATaNaMf~Rv~~~~~~~~~~~~ 365 (878)
T PRK09694 287 YQPRQLQTLVDALPLAPGLTVIEAPTGSGKTETALAYAWKLIDQQ-LADSVIFALPTQATANAMLSRMEAAASKLFPSPN 365 (878)
T ss_pred CCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999679999984567998799975899975899999999999734-8983699774798899999999999997368997
Q ss_pred CCCHHH-------HHHHHCCC---C-CHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCCCCCC
Q ss_conf 221464-------99731479---9-9789999999999--99831001321117999987555---4289758899985
Q 537021.9.peg.4 95 EILSAE-------ITKIQGKK---P-NKSDMSKARHLLI--TILETPGGLKVQTIHAFCEAIMQ---QFPLEANITSHFA 158 (242)
Q Consensus 95 ~~~~~~-------l~~~~~~~---~-~~~~~~~~~~ll~--~~l~~~~~~~i~Ti~~f~~~ilr---~~~~~~gl~~~f~ 158 (242)
....+. ........ . ..........-+. ...--...+-|+|++..-...++ .+-+..|+....-
T Consensus 366 v~LaHg~a~l~~~~~~l~~~~~~~~~~~~~~~~~~~W~~~~~Kr~LLap~~VGTiDQaLla~L~~kH~~LR~~gLa~kvv 445 (878)
T PRK09694 366 LILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVL 445 (878)
T ss_pred EEEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHCCCCEECCHHHHHHHHHCCCHHHHHHHHHCCCEE
T ss_conf 69744736550566651013676544543015777664111022313771546799999987461489999998628748
Q ss_pred CCCCH-----HHHHHHHHHHHH
Q ss_conf 16837-----899999999999
Q 537021.9.peg.4 159 IADEE-----QSKKLIEEAKKS 175 (242)
Q Consensus 159 i~d~~-----~~~~l~~~~~~~ 175 (242)
|+||- -+..++...++.
T Consensus 446 IiDEVHAYD~Ym~~lL~~lL~w 467 (878)
T PRK09694 446 IVDEVHAYDAYMNGLLEAVLKA 467 (878)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
T ss_conf 9725333458899999999999
No 25
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=97.32 E-value=0.00031 Score=49.50 Aligned_cols=118 Identities=19% Similarity=0.187 Sum_probs=67.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
Q ss_conf 68887998488899679999999999824789889566776878999999999999677521674221464997314799
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP 109 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~~~~~~~l~~~~~~~~ 109 (242)
-+++++|.|+.|||||++-..-+.+.+.+.....+++.+.+|+.=+.++.+++.+.+........ . ..+
T Consensus 13 ~g~~~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~Pt~aL~~q~~~~~~~~~~~~~~~~~-~-------~~g--- 81 (167)
T pfam00270 13 EGKDVLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAPTRELAEQIYEELKKLGKYLGLKVA-L-------LYG--- 81 (167)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEE-E-------ECC---
T ss_conf 69978998899975899999999999874778987999906088888999886432102676404-6-------417---
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 97899999999999983100132111799998755542897588999851683789
Q 537021.9.peg.4 110 NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 (242)
Q Consensus 110 ~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d~~~~ 165 (242)
+.....+. ..+.....+-++|...++..+..... ..+ .-++-|+||.+.
T Consensus 82 ~~~~~~~~-----~~~~~~~~Ilv~Tp~~l~~~l~~~~~-~~~-~~~~lIvDE~H~ 130 (167)
T pfam00270 82 GDSPKEQL-----RKLKKGPDILVGTPGRLLDLLERGGL-LLK-NLKLLVLDEAHR 130 (167)
T ss_pred CCCHHHHH-----HHHCCCCCEEEECHHHHHHHHHHCCC-CCC-CEEEEEEECHHH
T ss_conf 86178898-----76405770799478999999980331-211-003899880886
No 26
>KOG1807 consensus
Probab=97.32 E-value=0.00015 Score=51.78 Aligned_cols=64 Identities=22% Similarity=0.306 Sum_probs=52.3
Q ss_pred CHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4899998276--88879984888996799999999998247---8988956677687899999999999
Q 537021.9.peg.4 21 KSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 21 ~~qq~~a~~~--~~~~lV~A~aGSGKT~tL~~rv~~ll~~g---~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
++||.+-... -.--++.++||||||++=+..|.-||.+- ..|+-||+++|||-|.+.+.+||..
T Consensus 381 sSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807 381 SSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred HHHHHHHHHHHHHHHHEEECCCCCCCEEEHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHHHHHH
T ss_conf 889999987765632113259987722034999999996265545556446642235789999999873
No 27
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.31 E-value=0.00028 Score=49.84 Aligned_cols=114 Identities=19% Similarity=0.149 Sum_probs=67.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCH
Q ss_conf 88799848889967999999999982478988956677687899999999999967752167422146499731479997
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK 111 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 111 (242)
++++|.|+.|||||.+...-+...+... ...+++++++|+..+.++.+++.+....... ... .......
T Consensus 1 ~~~lv~~ptGsGKT~~~~~~~~~~~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~---~~~-------~~~~~~~ 69 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL-KGGQVLVLAPTRELANQVAERLKELFGEGIK---VGY-------LIGGTSI 69 (144)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHCCCCCE---EEE-------EECCCCH
T ss_conf 9999988997179999999999999756-8976999746799999999999997488717---999-------9613636
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 899999999999983100132111799998755542897588999851683789
Q 537021.9.peg.4 112 SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 (242)
Q Consensus 112 ~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d~~~~ 165 (242)
.. ..........+-++|...+...+.+..-.. -.-.+-|+||.+.
T Consensus 70 ~~-------~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~--~~~~~vViDEaH~ 114 (144)
T cd00046 70 KQ-------QEKLLSGKTDIVVGTPGRLLDELERLKLSL--KKLDLLILDEAHR 114 (144)
T ss_pred HH-------HHHHHCCCCCEEECCHHHHHHHHHCCCCCC--CCCCEEEEECHHH
T ss_conf 77-------898745898499828899999997387655--5100999988887
No 28
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.28 E-value=0.00031 Score=49.52 Aligned_cols=57 Identities=23% Similarity=0.349 Sum_probs=44.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 768887998488899679999999999824789889566776878999999999999677
Q 537021.9.peg.4 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 (242)
Q Consensus 29 ~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~ 88 (242)
..+.-++|.|+|||||||.+- .+++..+..+.+|+|+-+-+-||..+.+|+...+++
T Consensus 18 ~~~~~~vl~a~tGsGKtTqvP---~~ll~~~~~~g~I~~~qPRR~AA~s~A~RvA~e~~e 74 (812)
T PRK11664 18 KTAPQVLLKAPTGAGKSTWLP---LQLLQQGGINGKIIMLEPRRLAARNVAQRLAEQLGE 74 (812)
T ss_pred HHCCEEEEEECCCCCHHHHHH---HHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 979979999089999899999---999964688993899388399999999999997299
No 29
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=97.16 E-value=0.0012 Score=45.48 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=41.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 688879984888996799999999998247898895667768789999999999
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~ 83 (242)
-.++.+|.++.|||||.+....+.++...+ .++|++..|+.=+..+.+++.
T Consensus 17 ~~~~~~i~~pTGsGKT~~~~~~i~~~~~~~---~~~lvlvp~~~L~~Q~~~~~l 67 (103)
T pfam04851 17 EKKRGLIVMATGSGKTLTAAKLIARLLKGK---KKVLFLVPRKDLLEQALEEFV 67 (103)
T ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHHHHH
T ss_conf 639869995899987999999999998469---929999082999999999656
No 30
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.16 E-value=0.00062 Score=47.44 Aligned_cols=64 Identities=28% Similarity=0.322 Sum_probs=48.1
Q ss_pred HHHCCCHHHHHHH-----CCCCCEEEEECCCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2350948999982-----7688879984888996799999999998---2478988956677687899999999
Q 537021.9.peg.4 16 LISQTKSEQLLAS-----DPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCLTHTKAAAAEMSHR 81 (242)
Q Consensus 16 ~~~~~~~qq~~a~-----~~~~~~lV~A~aGSGKT~tL~~rv~~ll---~~g~~P~~IL~lTFT~kAA~El~~R 81 (242)
.++.+++=|+.|. ++++-+.|.+-||+||||.+-. +..+| .....| +|+.|.+|-+|+.||++-
T Consensus 965 ~l~~LT~GQK~At~LIltT~DRFvaIQGyAGVGKTTql~a-vi~ai~tl~~~~rp-qViGLAPTH~AV~EL~~~ 1036 (1756)
T PRK13709 965 LMEKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRA-VMSAVNMLPESERP-RVVGLGPTHRAVGEMRSA 1036 (1756)
T ss_pred HHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHH-HHHHHHHCCCCCCC-CEEEECCHHHHHHHHHHC
T ss_conf 6635785778777563247872599870355666778999-99999725513587-267567517899999964
No 31
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.11 E-value=0.00096 Score=46.07 Aligned_cols=67 Identities=22% Similarity=0.138 Sum_probs=49.4
Q ss_pred HHHHHHHCCCHHHHHHH-C---CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89732350948999982-7---6888799848889967999999999982478988956677687899999999
Q 537021.9.peg.4 12 ETIDLISQTKSEQLLAS-D---PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 (242)
Q Consensus 12 ~~~~~~~~~~~qq~~a~-~---~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~R 81 (242)
+.+.....++++|+.|. + +++-.+|++-|||||||+|..--...=..| -++...+.+-|||..|.+-
T Consensus 374 ~a~~~~~~Ls~EQ~~Av~hiT~~~~Ia~VvG~AGaGKStmL~aAReawEa~G---yrV~GaALsGkAAegLe~~ 444 (1102)
T PRK13826 374 ATFARHARLSDEQKTAIEHVAGAERIAAVIGRAGAGKTTMMKAAREAWEAAG---YRVVGGALAGKAAEGLEKE 444 (1102)
T ss_pred HHHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC---CEEEEECCCHHHHHHHHHC
T ss_conf 9985021389999999998537886689984288878899999999999779---7798015007899977534
No 32
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=97.09 E-value=0.0011 Score=45.66 Aligned_cols=134 Identities=18% Similarity=0.133 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHH---CCCCCEEEEECCCCCHHHHHHHHHHHHH-HCC-CCH---HHHHHHHHHHHHHHH
Q ss_conf 07888889732350948999982---7688879984888996799999999998-247-898---895667768789999
Q 537021.9.peg.4 6 SFQEHSETIDLISQTKSEQLLAS---DPTRSAWVSANAGSGKTHILVQRVLRLL-LAN-AHP---STLLCLTHTKAAAAE 77 (242)
Q Consensus 6 ~~~~~~~~~~~~~~~~~qq~~a~---~~~~~~lV~A~aGSGKT~tL~~rv~~ll-~~g-~~P---~~IL~lTFT~kAA~E 77 (242)
-+||.=+.- ....++-|+.|. .-+.++||+||-|||||-+-..-+...| ..| -+| =..|.+|+=++=.+.
T Consensus 11 ~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~D 88 (814)
T COG1201 11 RVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNND 88 (814)
T ss_pred HHHHHHHHH--CCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHH
T ss_conf 999999985--089987899999998589846998689997379999999999986068888885699995707888789
Q ss_pred HHHHHHHHHHHHHCC---CCCCCHHHHHHHHCCCC-C-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999996775216---74221464997314799-9-------7899999999999983100132111799998
Q 537021.9.peg.4 78 MSHRVLEIITAWSHL---SDEILSAEITKIQGKKP-N-------KSDMSKARHLLITILETPGGLKVQTIHAFCE 141 (242)
Q Consensus 78 l~~RI~~~l~~~~~~---~~~~~~~~l~~~~~~~~-~-------~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~ 141 (242)
|..||...+....-. ....+.....+....+| + ....--....+...+.+...+-|..+|.+..
T Consensus 89 i~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~ 163 (814)
T COG1201 89 IRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAE 163 (814)
T ss_pred HHHHHHHHHHHCCCCCCEECCCCCHHHHHHCCCCCCCEEEECHHHHHHHHCCHHHHHHHCCCCEEEEEHHHHHHC
T ss_conf 999999999975984444228788677630469999689958348999836888999860780999512545434
No 33
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.06 E-value=0.00077 Score=46.73 Aligned_cols=127 Identities=17% Similarity=0.146 Sum_probs=75.8
Q ss_pred CHHHHHHHC---CC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 489999827---68-88799848889967999999999982478988956677687899999999999967752167422
Q 537021.9.peg.4 21 KSEQLLASD---PT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 (242)
Q Consensus 21 ~~qq~~a~~---~~-~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~~~ 96 (242)
.+.|..+.. .. +.++|.|++|||||++...-+...+..+- -.++++++.|+..+..+.+++.+.++......
T Consensus 10 ~~~Q~~~~~~~~~~~~~~~i~~~tGsGKT~~~~~~~~~~~~~~~-~~~~li~~P~~~l~~q~~~~~~~~~~~~~~~~--- 85 (201)
T smart00487 10 RPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSLGLKV--- 85 (201)
T ss_pred CHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC-CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEE---
T ss_conf 98899999999838998899899996099999999999863389-97599990859999999988601021020445---
Q ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 146499731479997899999999999983100132111799998755542897588999851683789
Q 537021.9.peg.4 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 (242)
Q Consensus 97 ~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i~d~~~~ 165 (242)
......... ...+.........+-+.|++.+...+..... ..-..++-|+||...
T Consensus 86 -------~~~~~~~~~-----~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~--~~~~~~~vIiDE~H~ 140 (201)
T smart00487 86 -------VGLYGGDSK-----REQLRKLESGKTDILVTTPGRLLDLLENDLL--ELSNVDLVILDEAHR 140 (201)
T ss_pred -------EEEECCCCH-----HHHHHHHHCCCCCEEEECHHHHHHHHHHCCC--CCCCCEEEEEECHHH
T ss_conf -------565247737-----9999999759998999558999999972754--525431999989677
No 34
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.06 E-value=0.00088 Score=46.33 Aligned_cols=60 Identities=20% Similarity=0.050 Sum_probs=44.8
Q ss_pred CCCHHHHHHH-C---CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0948999982-7---6888799848889967999999999982478988956677687899999999
Q 537021.9.peg.4 19 QTKSEQLLAS-D---PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 (242)
Q Consensus 19 ~~~~qq~~a~-~---~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~R 81 (242)
.++++|+.|. + +.+-.+|++-|||||||+|..--.-.=..| -+|..++.|.|||.+|.+-
T Consensus 346 ~Ls~EQ~~A~~hiT~~~~iavVvG~AGtGKStmL~aAReawEa~G---yrV~GaALsGkAAegLe~~ 409 (992)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAG---YEVRGAALSGIAAENLEGG 409 (992)
T ss_pred CCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC---CEEEEECCCHHHHHHHHHC
T ss_conf 879999999998647897589983388878899999999999779---8898115006899976534
No 35
>PRK13767 ATP-dependent helicase; Provisional
Probab=97.00 E-value=0.0024 Score=43.25 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=45.8
Q ss_pred CCHHHHHHH---CCCCCEEEEECCCCCHHHHHHHHHH-HHHH---CCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 948999982---7688879984888996799999999-9982---4789--889566776878999999999999677
Q 537021.9.peg.4 20 TKSEQLLAS---DPTRSAWVSANAGSGKTHILVQRVL-RLLL---ANAH--PSTLLCLTHTKAAAAEMSHRVLEIITA 88 (242)
Q Consensus 20 ~~~qq~~a~---~~~~~~lV~A~aGSGKT~tL~~rv~-~ll~---~g~~--P~~IL~lTFT~kAA~El~~RI~~~l~~ 88 (242)
.++-|+.|. ..+.++||.||-|||||..-.-=++ .++. .|.. +=++|.||++++=++++..++...+..
T Consensus 33 p~~~Q~~a~~~i~~G~~~Li~ApTGsGKTlAaflp~l~~l~~~~~~~~~~~~~~~LyIsPLkAL~~D~~r~L~~pl~~ 110 (878)
T PRK13767 33 FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLGIIDELFRLAEEGELEDSVYCIYVSPLRALNNDIHRNLEEPLEE 110 (878)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 998999999999679988998999813999999999999985000367788728999684798899999988869999
No 36
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=96.94 E-value=0.00055 Score=47.77 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=45.4
Q ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9982768887998488899679999999999824-7898895667768789999999999996
Q 537021.9.peg.4 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 (242)
Q Consensus 25 ~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~-g~~P~~IL~lTFT~kAA~El~~RI~~~l 86 (242)
..|+...+++||++|-|||||| |+|-++.-|.. ..+-++|..+==|+ |+.=+-.+..
T Consensus 133 ~~Av~ar~NIlv~GGTGSGKTT-LaNAlla~I~~l~~P~dR~vIiEDT~----ElQC~A~N~V 190 (315)
T TIGR02782 133 REAVAARKNILVVGGTGSGKTT-LANALLAEIAKLNDPDDRVVIIEDTA----ELQCAAENLV 190 (315)
T ss_pred HHHHHHCCCEEEECCCCCCHHH-HHHHHHHHHHHCCCCCCEEEEEECCH----HHHHCCCCEE
T ss_conf 9999712988998145885799-99999998852169996189985471----3201378706
No 37
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.90 E-value=0.031 Score=35.47 Aligned_cols=58 Identities=17% Similarity=0.358 Sum_probs=36.5
Q ss_pred HHHHHHCCC---CCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH---HHHHHHHHHHHH
Q ss_conf 999982768---88799848889967999999999982478988956677---687899999999
Q 537021.9.peg.4 23 EQLLASDPT---RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT---HTKAAAAEMSHR 81 (242)
Q Consensus 23 qq~~a~~~~---~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lT---FT~kAA~El~~R 81 (242)
..+++..|+ -|++|.++.|.|||+.| +-+.+-+.+.-+..+|+.+| |++.-..-++.+
T Consensus 134 A~~Va~~pg~~yNPLfIyG~~GlGKTHLl-~AIgn~~~~~~p~~~v~Y~tae~F~~~~v~al~~~ 197 (447)
T PRK00149 134 ALAVAENPGKAYNPLFIYGGVGLGKTHLL-HAIGNYILEKNPNAKVVYVSSEKFTNDFVKALRNN 197 (447)
T ss_pred HHHHHHCCCCCCCCEEEECCCCCCHHHHH-HHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCC
T ss_conf 99998376767785589779988788999-99999999858997289954999999999998518
No 38
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=96.80 E-value=0.0029 Score=42.69 Aligned_cols=80 Identities=18% Similarity=0.173 Sum_probs=49.2
Q ss_pred CCHHHH---HHHHHH------HHHCCCHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 100788---888973------2350948999982--76888799848889967999999999982478988956677687
Q 537021.9.peg.4 4 HNSFQE---HSETID------LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 (242)
Q Consensus 4 ~~~~~~---~~~~~~------~~~~~~~qq~~a~--~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~ 72 (242)
|++|++ +..+.+ +..+|.=|+.++- -.++.+++.|.-|||||-.-.-=++..+..+..--+.|++++|+
T Consensus 3 ~~sF~~l~L~~~ll~aL~~~G~~~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~~l~~~~~~~qaLIL~PTR 82 (459)
T PRK11776 3 MTAFSTLPLPPALLANLDELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR 82 (459)
T ss_pred CCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECHH
T ss_conf 68863489799999999977999999899999999977998899889985899999999998411367898599996759
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999999
Q 537021.9.peg.4 73 AAAAEMSHRVL 83 (242)
Q Consensus 73 kAA~El~~RI~ 83 (242)
.=|....+-+.
T Consensus 83 ELa~QV~~~~~ 93 (459)
T PRK11776 83 ELADQVAKEIR 93 (459)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 39
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.77 E-value=0.0017 Score=44.31 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=26.3
Q ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9827688879984888996799999999998
Q 537021.9.peg.4 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 26 ~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
.+.-|.|=+||-+|-||||||||+.-|-|+=
T Consensus 122 ~a~~~~GLiLVTGPTGSGKSTTlAsmIDyIN 152 (350)
T TIGR01420 122 LAERPRGLILVTGPTGSGKSTTLASMIDYIN 152 (350)
T ss_pred HHHCCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9836699389876889867899999997874
No 40
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.46 E-value=0.0047 Score=41.24 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=47.0
Q ss_pred HHHCCCHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2350948999982--76888799848889967999999999982478988956677687899999999999
Q 537021.9.peg.4 16 LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 16 ~~~~~~~qq~~a~--~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
+..+|.=|++++- --++.+++.|.-|||||-.-.-=++..|.....--++|+|++|+.-|..+.+-+..
T Consensus 26 f~~PTpIQ~~aIP~iL~GkDvi~~AqTGSGKTlAFlLPiL~~l~~~~~~pqaLIL~PTRELA~QV~~~~~~ 96 (629)
T PRK11634 26 YEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTD 96 (629)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHH
T ss_conf 99999999999999967998899788847899999999999866236898689978998999999999999
No 41
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=96.44 E-value=0.0045 Score=41.35 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=40.4
Q ss_pred HHCCCHHHHHHHCC--CC-CEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 35094899998276--88-8799848889967999999999982478988956677687
Q 537021.9.peg.4 17 ISQTKSEQLLASDP--TR-SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 (242)
Q Consensus 17 ~~~~~~qq~~a~~~--~~-~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~ 72 (242)
+.+-|+.|+.+.+. +. -++|.++||||||+.-+...++++.+| ..++|+++-.+-
T Consensus 2 I~P~~~~Q~~~~~~l~~~~iv~~~GpAGtGKT~la~~~al~~l~~~-~~~kiii~Rp~v 59 (205)
T pfam02562 2 IKPKTLGQKRYVEAIRKNDIVFGIGPAGTGKTYLAVAAAVDALKDG-KVKRIILTRPAV 59 (205)
T ss_pred CCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCC
T ss_conf 8789888999999971798079989998609999999999999718-943799975771
No 42
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=96.30 E-value=0.0062 Score=40.39 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=47.0
Q ss_pred HHHCCCHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHHHH-CC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23509489999827--6888799848889967999999999982-47-89889566776878999999999999
Q 537021.9.peg.4 16 LISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLL-AN-AHPSTLLCLTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 16 ~~~~~~~qq~~a~~--~~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g-~~P~~IL~lTFT~kAA~El~~RI~~~ 85 (242)
+-.+|.=|+..+-. .++++++.|+.|||||..-+-=++..+. .. .+.-+.+++++|+.-|....+.+...
T Consensus 19 ~~~pt~IQ~~~ip~il~g~dvi~~a~TGSGKTlay~lpil~~l~~~~~~~~~~alil~PTrELa~Qi~~~~~~l 92 (203)
T cd00268 19 FEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKL 92 (203)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 99999999999999977998899757997222888869999986166768966999968799999999999985
No 43
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.29 E-value=0.0068 Score=40.09 Aligned_cols=66 Identities=23% Similarity=0.210 Sum_probs=52.6
Q ss_pred CCHHHHHHHC------CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9489999827------68887998488899679999999999824789889566776878999999999999677
Q 537021.9.peg.4 20 TKSEQLLASD------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 (242)
Q Consensus 20 ~~~qq~~a~~------~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~ 88 (242)
+++.|..|.+ ...+.|+.+.+|||||.+..+.+...+..| .++|++-+.-+=+..|.+|+.++++.
T Consensus 169 L~~eQ~~a~~~i~~~~~~~~~LL~GvTGSGKTevYl~li~~~l~~G---kqvLiLvPEI~lt~q~~~rl~~~fg~ 240 (699)
T PRK05580 169 LNEEQAAALAAIRAAGGFSAFLLDGVTGSGKTEVYLQAIAEALAQG---KQALVLVPEIALTPQLLARFRARFGA 240 (699)
T ss_pred CCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 8999999999998558887178747898607999999999999739---97899917678789999999987099
No 44
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA; InterPro: IPR014136 This entry represents the Ti-type conjugative transfer relaxase TraA. TraA contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, IPR005053 from INTERPRO) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, IPR014129 from INTERPRO). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer ..
Probab=96.28 E-value=0.0072 Score=39.94 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=42.8
Q ss_pred HCCC-HHHHHHHCC---CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5094-899998276---888799848889967999999999982478988956677687899999999
Q 537021.9.peg.4 18 SQTK-SEQLLASDP---TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 (242)
Q Consensus 18 ~~~~-~qq~~a~~~---~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~R 81 (242)
..++ ||+.++-+- .+=.+|++-|||||||.|.--=..-...| =+|..=.-+=|||.+|.+-
T Consensus 413 ~rLs~EQ~~Av~hvt~s~~iavVvG~AGtGKSt~L~aAR~AWe~~G---y~V~GAALsGKAAegLe~~ 477 (888)
T TIGR02768 413 ERLSEEQKEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAG---YRVIGAALSGKAAEGLEAE 477 (888)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC---CEEEEHHHHHHHHHHHHCC
T ss_conf 7745899999875328996489974899876678999999998739---7787154555898873002
No 45
>pfam07652 Flavi_DEAD Flavivirus DEAD domain.
Probab=96.25 E-value=0.0041 Score=41.68 Aligned_cols=48 Identities=25% Similarity=0.256 Sum_probs=39.7
Q ss_pred EEEEECCCCCHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79984888996799-9999999982478988956677687899999999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 34 ~lV~A~aGSGKT~t-L~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
-++-.-||+|||+. |.+.+...+.++ -+.|+++.||-.++||.+-+..
T Consensus 5 t~ld~HPGaGKTr~vLP~~v~~~i~~~---lRtlVLaPTRVV~~Em~eAL~g 53 (146)
T pfam07652 5 TVLDLHPGAGKTRKVLPELVRECIDRR---LRTLVLAPTRVVLAEMEEALRG 53 (146)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHCC---CEEEEECCHHHHHHHHHHHHCC
T ss_conf 798538999970224899999999728---6189977279999999999758
No 46
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=96.24 E-value=0.0022 Score=43.52 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=15.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 79984888996799999999998
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
+.|+++|||||||+- ..++.-|
T Consensus 3 I~ISGpPGSGktTvA-~~lA~~L 24 (173)
T TIGR02173 3 ITISGPPGSGKTTVA-KILAEKL 24 (173)
T ss_pred EEEECCCCCCHHHHH-HHHHHHC
T ss_conf 887358968647899-9999863
No 47
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=96.20 E-value=0.0092 Score=39.18 Aligned_cols=69 Identities=28% Similarity=0.295 Sum_probs=46.2
Q ss_pred HHHCCCHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHHHHHHH-CC-----CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2350948999982--76888799848889967999999999982-47-----8988956677687899999999999
Q 537021.9.peg.4 16 LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLL-AN-----AHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 16 ~~~~~~~qq~~a~--~~~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g-----~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
+..+|.=|++++- -.++.+++.|.-|||||-.-+-=++..|. .. -.|-+.|++++|+.-|..+.+-+..
T Consensus 21 ~~~PTpIQ~~aIP~iL~GrDvl~~A~TGSGKTlAflLPil~~l~~~~~~~~~~~~~~aLIL~PTRELA~Qi~~~~~~ 97 (457)
T PRK10590 21 YREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRD 97 (457)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 99999999999999977998899889811899999999999986367654456882499976879999999999997
No 48
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.15 E-value=0.0026 Score=43.03 Aligned_cols=46 Identities=24% Similarity=0.274 Sum_probs=34.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87998488899679999999999824789889566776878999999999
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI 82 (242)
+.||.++||||||+.-.+-+.+.+.+| ++++.+||.. ....+..+.
T Consensus 1 stLi~G~pGsGKT~~a~qfl~~~a~~g---e~~lyis~eE-~~~~l~~~~ 46 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG---EPGLYVTLEE-SPEELIENA 46 (187)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCC---CCEEEEEECC-CHHHHHHHH
T ss_conf 915876899999999999999998769---9789999507-999999999
No 49
>PRK04328 hypothetical protein; Provisional
Probab=96.12 E-value=0.0039 Score=41.80 Aligned_cols=50 Identities=16% Similarity=0.233 Sum_probs=37.5
Q ss_pred CCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6888-79984888996799999999998247898895667768789999999999
Q 537021.9.peg.4 30 PTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 (242)
Q Consensus 30 ~~~~-~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~ 83 (242)
|.|+ +||.++||||||+--.+-+.+-+.+| ++.+.+||..... .+..+..
T Consensus 22 p~gs~~Lv~G~pGtGKT~la~qFl~~g~~~G---E~~lyis~eE~~~-~l~~~~~ 72 (250)
T PRK04328 22 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMG---EPGIYVALEEHPV-QVRRNMA 72 (250)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHHCC---CCEEEEEEECCHH-HHHHHHH
T ss_conf 7996999982899998999999999998769---9779999727999-9999999
No 50
>TIGR00376 TIGR00376 DNA helicase, putative; InterPro: IPR004483 Eukaryotic members of this family have been characterised as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterised as helicases.; GO: 0003677 DNA binding, 0005524 ATP binding.
Probab=96.07 E-value=0.0082 Score=39.52 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=55.5
Q ss_pred HCCCHHHHHHHC----CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 509489999827----6888799848889967999999999982478988956677687899999999999967
Q 537021.9.peg.4 18 SQTKSEQLLASD----PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 18 ~~~~~qq~~a~~----~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~ 87 (242)
..+++.|+.+.. ...-.++.++||||||++++..+...+..| ..++++++..++.++..+.+++.....
T Consensus 201 ~~l~~~~~~~~~~~~~~~~~~~~~gp~g~g~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~d~~~~~~~~~~p 273 (709)
T TIGR00376 201 PNLNESQKEAVGFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRG-PEERVLVTAPSNIAVDNLLERLAPLYP 273 (709)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 2322346777654312344168726777762156899999998528-533067623531037788888764145
No 51
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=96.03 E-value=0.013 Score=38.24 Aligned_cols=70 Identities=26% Similarity=0.288 Sum_probs=45.8
Q ss_pred HHHCCCHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHHH-HHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2350948999982--7688879984888996799999999-9982---4789889566776878999999999999
Q 537021.9.peg.4 16 LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVL-RLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 16 ~~~~~~~qq~~a~--~~~~~~lV~A~aGSGKT~tL~~rv~-~ll~---~g~~P~~IL~lTFT~kAA~El~~RI~~~ 85 (242)
+..+|.=|+.++- -.++++++.|+-|||||..-.-=++ +++. ....+-++|++++|+.=|..+.+.+...
T Consensus 23 ~~~pT~IQ~~aIp~il~g~dvl~~A~TGSGKTlaylLPil~~l~~~~~~~~~~~~~LIl~PTrELa~Qi~~~~~~l 98 (417)
T PRK11192 23 YTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQAREL 98 (417)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHH
T ss_conf 9999999999999997799889989998679999999999998752103689964999947199999999999986
No 52
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.03 E-value=0.0049 Score=41.13 Aligned_cols=50 Identities=22% Similarity=0.187 Sum_probs=32.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH--HHHHHHHHHHHHHHH
Q ss_conf 79984888996799999999998247898895667768--789999999999996
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT--KAAAAEMSHRVLEII 86 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT--~kAA~El~~RI~~~l 86 (242)
+++.+++|+|||||++....++..+|. +|.++|-- |.+|.|=-.-..+.+
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~~~~~~---kV~lit~Dt~R~gA~eQL~~~a~~l 54 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGK---KVLLVAADTYRPAAIEQLRVLGEQV 54 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC---EEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 999899999889999999999997699---2899974887577999999999974
No 53
>PRK08116 hypothetical protein; Validated
Probab=96.01 E-value=0.0051 Score=40.96 Aligned_cols=47 Identities=13% Similarity=0.202 Sum_probs=33.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8887998488899679999999999824789889566776878999999999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~ 85 (242)
+..++..++||||||+..+...-.++.+|. .++.++++. +-++|...
T Consensus 108 ~~GLll~G~~GtGKThLa~aIa~~l~~~g~---~V~~~~~~~-----ll~~lk~~ 154 (262)
T PRK08116 108 SVGLLLWGSPGNGKTYLAAAIANELIEKGV---PVVFVNVPE-----LLNRIKST 154 (262)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCC---EEEEEEHHH-----HHHHHHHH
T ss_conf 861899898999899999999999998799---399988999-----99999999
No 54
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=96.01 E-value=0.02 Score=36.88 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=42.1
Q ss_pred HHHCCCCCE-EEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 982768887-9984888996799999999998247898895667768789999999999996775
Q 537021.9.peg.4 26 LASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 (242)
Q Consensus 26 ~a~~~~~~~-lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~ 89 (242)
++.+.+.++ ++.||-|||||..-.- ..+..+ .+++.+++|++-++.+.+|+.+.+..+
T Consensus 8 ~~~~~~~~~ivitAPTgsGKT~Aa~l---p~l~~~---~~~lyi~P~kAL~~Dq~~~l~~~~~~~ 66 (357)
T TIGR03158 8 ALQSKDADIIFNTAPTGAGKTLAWLT---PLLHGE---NDTIALYPTNALIEDQTEAIKEFVDVF 66 (357)
T ss_pred HHHCCCCCEEEEECCCCCCHHHHHHH---HHHHCC---CCEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 99768998699989998569999999---997389---879997778999999999999999874
No 55
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=95.99 E-value=0.0075 Score=39.79 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=22.6
Q ss_pred HHCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 82768887998488899679999999999
Q 537021.9.peg.4 27 ASDPTRSAWVSANAGSGKTHILVQRVLRL 55 (242)
Q Consensus 27 a~~~~~~~lV~A~aGSGKT~tL~~rv~~l 55 (242)
++...++++|.++.||||||+|-.-..++
T Consensus 135 ~v~~~~~ilIsG~TGSGKTT~l~all~~i 163 (283)
T pfam00437 135 AVQARGNILVSGGTGSGKTTLLYALLNEI 163 (283)
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 99819759998899998899999999840
No 56
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.95 E-value=0.02 Score=36.75 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=42.2
Q ss_pred HHCCCHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHHH-HHHHCCCCHH------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 350948999982--7688879984888996799999999-9982478988------956677687899999999999
Q 537021.9.peg.4 17 ISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPS------TLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 17 ~~~~~~qq~~a~--~~~~~~lV~A~aGSGKT~tL~~rv~-~ll~~g~~P~------~IL~lTFT~kAA~El~~RI~~ 84 (242)
..+|.=|++.+- --++++++.|.-|||||-.-.-=++ +++......+ +.|++++|+.=|..+.+-+..
T Consensus 105 ~~PTpIQ~~aIP~iL~GkDvi~~A~TGSGKTlAyLLPil~~ll~~~~~~~~~~~~p~aLIL~PTRELa~QI~~~~~~ 181 (472)
T PRK01297 105 PYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 181 (472)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 99999999999999769988998999867999999999999971775101136895299987999999999999999
No 57
>pfam05970 DUF889 PIF1 helicase. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated.
Probab=95.93 E-value=0.0029 Score=42.71 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=30.1
Q ss_pred ECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 48889967999999999982478988956677687899999
Q 537021.9.peg.4 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 (242)
Q Consensus 38 A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El 78 (242)
++||||||++|-..+.++-..+ ..++++++|-.||..+
T Consensus 1 G~AGTGKS~ll~~i~~~l~~~~---~~v~vtA~TGiAA~~i 38 (418)
T pfam05970 1 GYGGTGKTFLWNALSARIRSRG---KIVLNVASSGIAALLL 38 (418)
T ss_pred CCCCCCHHHHHHHHHHHHHHCC---CEEEEECCHHHHHHCC
T ss_conf 9798879999999999997689---8899989689998516
No 58
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=95.92 E-value=0.03 Score=35.52 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=17.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 887998488899679999999999
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRL 55 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~l 55 (242)
.-+++-++||||||++.-.....+
T Consensus 13 kai~laG~pGAGKS~~~~~~~~~~ 36 (191)
T pfam06414 13 VAVLLGGQPGAGKTELARALLEEL 36 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 799995799888899999998753
No 59
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.91 E-value=0.013 Score=38.07 Aligned_cols=51 Identities=16% Similarity=0.155 Sum_probs=30.0
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 76888799848889967999999999982-47898895667768789999999
Q 537021.9.peg.4 29 DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSH 80 (242)
Q Consensus 29 ~~~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~ 80 (242)
.+.+++++.++||||||++. ..+++.+. .+.+--.+-+-.++.+...+...
T Consensus 17 ~~~~~ill~GppGtGKT~la-~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 17 PPPKNLLLYGPPGTGKTTLA-RAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHH
T ss_conf 79980899899998865999-99999712137982785477704677775760
No 60
>PRK02362 ski2-like helicase; Provisional
Probab=95.88 E-value=0.017 Score=37.30 Aligned_cols=65 Identities=20% Similarity=0.194 Sum_probs=49.3
Q ss_pred HHCCCHHHHHHHC----CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3509489999827----6888799848889967999999999982478988956677687899999999999
Q 537021.9.peg.4 17 ISQTKSEQLLASD----PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 17 ~~~~~~qq~~a~~----~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
+..+.+-|..+.. .+++++|.||-|||||.+----+.+.+.+| .+++.+++.++=++|-...+.+
T Consensus 21 I~~Lyp~Q~eal~~gl~~g~NlvvsaPTgsGKTlvAElail~~l~~g---~k~vYi~P~kALa~EK~~~~~~ 89 (736)
T PRK02362 21 IEELYPPQAEAVEAGLLEGKNLLAAIPTASGKTLLAELAMLKAIAEG---GKALYIVPLRALASEKFEEFSE 89 (736)
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC---CEEEEECCHHHHHHHHHHHHHH
T ss_conf 97578999999986435698189979999858999999999999839---9799985879999999999998
No 61
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.84 E-value=0.019 Score=36.91 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=43.2
Q ss_pred HHHCCCHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHHH-HHHHCCCCH------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2350948999982--7688879984888996799999999-998247898------895667768789999999999996
Q 537021.9.peg.4 16 LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHP------STLLCLTHTKAAAAEMSHRVLEII 86 (242)
Q Consensus 16 ~~~~~~~qq~~a~--~~~~~~lV~A~aGSGKT~tL~~rv~-~ll~~g~~P------~~IL~lTFT~kAA~El~~RI~~~l 86 (242)
+..+|.=|++++- ..++.+++.|.-|||||..-+-=++ +++....+. -+.|++++|+. +...|.+.+
T Consensus 29 ~~~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~~ll~~~~~~~~~~~~p~aLIL~PTRE----La~Qi~~~~ 104 (423)
T PRK04837 29 FEYCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHHLLSHPAPEGRKVNQPRALIMAPTRE----LAVQIHADA 104 (423)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHH----HHHHHHHHH
T ss_conf 9999999999999996799889989998749999999999999837453345567861899938899----999999999
Q ss_pred HHHH
Q ss_conf 7752
Q 537021.9.peg.4 87 TAWS 90 (242)
Q Consensus 87 ~~~~ 90 (242)
..++
T Consensus 105 ~~l~ 108 (423)
T PRK04837 105 EPLA 108 (423)
T ss_pred HHHH
T ss_conf 9974
No 62
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.84 E-value=0.0077 Score=39.71 Aligned_cols=46 Identities=26% Similarity=0.283 Sum_probs=29.6
Q ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 98276888799848889967999999999982478988956677687
Q 537021.9.peg.4 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 (242)
Q Consensus 26 ~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~ 72 (242)
.++....+++|.+|.||||||.+-.. +..+....+-++|+.+-=|.
T Consensus 139 ~aV~~r~nilVsGgTGSGKTTllnaL-~~~i~~~~p~eRivtIEDt~ 184 (323)
T PRK13833 139 SAISSRLNIVISGGTGSGKTTLANAV-IAEIVASAPEDRLVILEDTA 184 (323)
T ss_pred HHHHCCCCEEEECCCCCCHHHHHHHH-HHHHCCCCCHHEEEEECCCC
T ss_conf 99981896899917777568999999-98640289323399945750
No 63
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=95.84 E-value=0.0067 Score=40.14 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=33.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH--HHHHHHHHHHHHHHH
Q ss_conf 879984888996799999999998247898895667768--789999999999996
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT--KAAAAEMSHRVLEII 86 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT--~kAA~El~~RI~~~l 86 (242)
-+++.+++|+|||||++....++..+|. +|..+|-- |.+|.|--....+.+
T Consensus 3 vi~lvGptGvGKTTTiaKLAa~~~~~~~---~V~lit~Dt~R~gA~eQL~~ya~~l 55 (196)
T pfam00448 3 VILLVGLQGSGKTTTIAKLAAYLKKQGK---KVLLVAADTFRAAAIEQLKQLAERL 55 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC---EEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 9999899999889999999999997799---2899975877688999999999863
No 64
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=95.80 E-value=0.017 Score=37.26 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=31.9
Q ss_pred HCCCCCEEEEECCCCCHHHHHH-HHHHHHHHCC--CCHHHHHHHHHHHHHHH
Q ss_conf 2768887998488899679999-9999998247--89889566776878999
Q 537021.9.peg.4 28 SDPTRSAWVSANAGSGKTHILV-QRVLRLLLAN--AHPSTLLCLTHTKAAAA 76 (242)
Q Consensus 28 ~~~~~~~lV~A~aGSGKT~tL~-~rv~~ll~~g--~~P~~IL~lTFT~kAA~ 76 (242)
....+.++++||.|||||-.+. .-+.|+..++ .....+..+|-|...-.
T Consensus 24 l~~~~~~llEaPTGtGKTlalL~~al~~~~~~~~~~~~~ki~~~t~t~~~~~ 75 (289)
T smart00489 24 LDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIE 75 (289)
T ss_pred HHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCHHCCCCCEEEEEECCHHHHH
T ss_conf 9749979998999651899999999999996701024561687615378899
No 65
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=95.80 E-value=0.017 Score=37.26 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=31.9
Q ss_pred HCCCCCEEEEECCCCCHHHHHH-HHHHHHHHCC--CCHHHHHHHHHHHHHHH
Q ss_conf 2768887998488899679999-9999998247--89889566776878999
Q 537021.9.peg.4 28 SDPTRSAWVSANAGSGKTHILV-QRVLRLLLAN--AHPSTLLCLTHTKAAAA 76 (242)
Q Consensus 28 ~~~~~~~lV~A~aGSGKT~tL~-~rv~~ll~~g--~~P~~IL~lTFT~kAA~ 76 (242)
....+.++++||.|||||-.+. .-+.|+..++ .....+..+|-|...-.
T Consensus 24 l~~~~~~llEaPTGtGKTlalL~~al~~~~~~~~~~~~~ki~~~t~t~~~~~ 75 (289)
T smart00488 24 LDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIE 75 (289)
T ss_pred HHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCHHCCCCCEEEEEECCHHHHH
T ss_conf 9749979998999651899999999999996701024561687615378899
No 66
>pfam10412 TrwB_AAD_bind Type IV secretion-system coupling protein DNA-binding domain. The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Probab=95.80 E-value=0.012 Score=38.26 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=24.6
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 7688879984888996799999999998247
Q 537021.9.peg.4 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 29 ~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
+..++++|.|++|||||..+..-+-.++..|
T Consensus 13 ~~~~H~lviG~tGsGKT~~i~~~i~~~~~~~ 43 (386)
T pfam10412 13 SETQHILIVGTTGTGKTQALRELLDQIRARG 43 (386)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 7767589988999988879999999999779
No 67
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=95.77 E-value=0.0077 Score=39.73 Aligned_cols=44 Identities=25% Similarity=0.434 Sum_probs=28.4
Q ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 998276888799848889967999999999982478988956677687
Q 537021.9.peg.4 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 (242)
Q Consensus 25 ~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~ 72 (242)
+.|....++++|.+|+||||||-+ +-++..|=.. +||+.|==|+
T Consensus 152 ~~Ai~~~knIii~GGTgSGKTTf~-kal~~~IP~~---ER~iTIED~~ 195 (328)
T TIGR02788 152 RLAIASRKNIIISGGTGSGKTTFL-KALVKEIPKD---ERLITIEDTR 195 (328)
T ss_pred HHHHHCCCEEEEEECCCCHHHHHH-HHHHHCCCCC---CCEEEEEEEE
T ss_conf 999873891999906897189999-9997327622---5278885201
No 68
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.75 E-value=0.0056 Score=40.70 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=35.7
Q ss_pred CCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6888-7998488899679999999999824789889566776878999999999
Q 537021.9.peg.4 30 PTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 (242)
Q Consensus 30 ~~~~-~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI 82 (242)
|.|+ ++|.++||||||+.-.+-+...+.+| ++.+.+||-... .++..+.
T Consensus 30 p~g~~~li~G~~G~GKt~~~~~f~~~~~~~g---~~~~~~~~ee~~-~~~~~~~ 79 (241)
T PRK06067 30 PFGSLILIEGENDTGKSVLSQQFVWGALNQG---KRGLAITTENTS-KSYLKQM 79 (241)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC---CEEEEEEECCCH-HHHHHHH
T ss_conf 7990899980799887999999999998679---829999942899-9999999
No 69
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.75 E-value=0.0071 Score=39.96 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=26.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH
Q ss_conf 8887998488899679999999999824-78988956677687899
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~-g~~P~~IL~lTFT~kAA 75 (242)
++..||.++||||||+.-.+-..+-+.+ | +..|.+||+....
T Consensus 24 g~~~LV~G~pGsGKTtla~QfL~~Ga~~~G---E~~lyitl~E~~~ 66 (501)
T PRK09302 24 GRPTLVSGTAGTGKTLFALQFLHNGIKSFG---EPGVFVTFEESPE 66 (501)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCCCHH
T ss_conf 977999838999999999999999988559---9789998579999
No 70
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.72 E-value=0.014 Score=37.80 Aligned_cols=34 Identities=29% Similarity=0.312 Sum_probs=27.1
Q ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 9982768887998488899679999999999824
Q 537021.9.peg.4 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA 58 (242)
Q Consensus 25 ~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~ 58 (242)
..+..|.|-+||-+|.||||||||-.-+.++-..
T Consensus 252 ~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 252 RLLNRPQGLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred HHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9972897089996899998899999999986278
No 71
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=95.72 E-value=0.017 Score=37.24 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=43.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8887998488899679999999999824789889566776878999999999999677
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~ 88 (242)
.+..+|++++|+|||.+-..-+..+... +|+|..|+.-...+++++...+..
T Consensus 55 ~~~gvivlpTGaGKT~va~~~~~~~~~~------~Lvlv~~~~L~~Qw~~~~~~~~~~ 106 (442)
T COG1061 55 ERRGVIVLPTGAGKTVVAAEAIAELKRS------TLVLVPTKELLDQWAEALKKFLLL 106 (442)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCC------EEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 7867999679998899999999982698------899978299999999999973488
No 72
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.71 E-value=0.2 Score=29.77 Aligned_cols=115 Identities=16% Similarity=0.186 Sum_probs=66.6
Q ss_pred CCCCE-EEEECCCCCHHHHHHHHHHHHHHC--------------------------------------------------
Q ss_conf 68887-998488899679999999999824--------------------------------------------------
Q 537021.9.peg.4 30 PTRSA-WVSANAGSGKTHILVQRVLRLLLA-------------------------------------------------- 58 (242)
Q Consensus 30 ~~~~~-lV~A~aGSGKT~tL~~rv~~ll~~-------------------------------------------------- 58 (242)
-.++| -.++|-|.||||||..-|.-||-.
T Consensus 25 Ld~lVttLsGgNGAGKSTtMaAf~taLIPD~tlLhfrnttEagat~~srDkgl~gkL~~g~cya~Ldv~ns~~qR~l~gV 104 (1486)
T PRK04863 25 LDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYAALDVVNSRHQRVVVGV 104 (1486)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEECCCCCEEEEEE
T ss_conf 24420330058886579899999999676430231146665554456543112203588850687755247775689998
Q ss_pred ------------------------CCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
Q ss_conf ------------------------7898895667768789-----99999999999677521674221464997314799
Q 537021.9.peg.4 59 ------------------------NAHPSTLLCLTHTKAA-----AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP 109 (242)
Q Consensus 59 ------------------------g~~P~~IL~lTFT~kA-----A~El~~RI~~~l~~~~~~~~~~~~~~l~~~~~~~~ 109 (242)
++.|-.+|..+-.+.- -.|+|+++...-..+.......-.+....-.+.-|
T Consensus 105 rlqqvaGrd~kVdikpF~i~gLp~~v~Ptd~L~e~~~~~~arv~~l~elkd~aa~lG~~fk~f~Si~dYh~~mFd~GV~P 184 (1486)
T PRK04863 105 RLQQVAGRDKKVDIKPFAIQGLPDSVQPTDLLTETVGERQARVLTLNELKDKAAELGVQFKQFNSITDYHSLMFDLGIIP 184 (1486)
T ss_pred EEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCEECCCCHHHHHHHHHHHCCEEEECCCHHHHHHHHHHCCCCC
T ss_conf 76540578886676401441686555779999986189310167778899999983873010798789999998679885
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97899999999999983100132111799998755542
Q 537021.9.peg.4 110 NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 (242)
Q Consensus 110 ~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~ 147 (242)
........+..++.+++..- .+-|.+-..+-+|.|
T Consensus 185 krLrs~~DRskfyrlieaSl---yGgIssaItrsLrdY 219 (1486)
T PRK04863 185 RRLRSSSDRSKFYRLIEASL---YGGISSAITRSLRDY 219 (1486)
T ss_pred HHCCCHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHH
T ss_conf 10068666899999999997---067068888899998
No 73
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB; InterPro: IPR010225 This entry represents HrpB, one of two related predicted DEAH-box ATP-dependent helicases of unknown function found in many proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti, designated HelO, has been studied but is not essential for growth and mutants have no obvious phenotype . HrpB is typically about 800 residues in length, while its paralog HrpA (IPR010222 from INTERPRO), also uncharacterised, is about 1300 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing ..
Probab=95.71 E-value=0.013 Score=38.15 Aligned_cols=66 Identities=20% Similarity=0.146 Sum_probs=51.7
Q ss_pred HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999827688879984888996799999999998247-89889566776878999999999999677521
Q 537021.9.peg.4 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 (242)
Q Consensus 23 qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g-~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~ 91 (242)
+=+.+.+..--|+..|+||.||||.+= +-||..+ .--.+|+++=+=|=||...-.|+.+.+++-..
T Consensus 9 ~Lr~al~~~~~vvL~APpGAGKsT~~P---LaLL~~pW~~~~kIimLEPRRlAAR~~A~rlA~~LgE~VG 75 (858)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVP---LALLDAPWLIGGKIIMLEPRRLAARSAAQRLASQLGEEVG 75 (858)
T ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHH---HHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999986117650641672247110588---9976626434880787474478999999999997088988
No 74
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.70 E-value=0.011 Score=38.65 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=49.3
Q ss_pred CCCHHHHHHHCC-------CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 094899998276-------8887998488899679999999999824789889566776878999999999999677
Q 537021.9.peg.4 19 QTKSEQLLASDP-------TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 (242)
Q Consensus 19 ~~~~qq~~a~~~-------~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~ 88 (242)
.+|.+|..|.+. -.+.|+.+.+|||||.+..+.+...|..| .++|++-+--+=..-|-+|+..+++.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---kqvLvLVPEI~Ltpq~~~rf~~rFg~ 271 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---KQVLVLVPEIALTPQLLARFKARFGA 271 (730)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCC---CEEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 038899999999997505666536767778858999999999999759---87999956534569999999998678
No 75
>COG1204 Superfamily II helicase [General function prediction only]
Probab=95.69 E-value=0.026 Score=35.98 Aligned_cols=77 Identities=22% Similarity=0.191 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHC--C-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0078888897323509489999827--6-888799848889967999999999982478988956677687899999999
Q 537021.9.peg.4 5 NSFQEHSETIDLISQTKSEQLLASD--P-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 (242)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~qq~~a~~--~-~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~R 81 (242)
..+-|+.+.-.+-...+.||-++-. . ++++||.||-|||||-.--..+++-+.+| -.+++.+.++++=|.|+.++
T Consensus 18 ~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek~~~ 95 (766)
T COG1204 18 DRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEKYEE 95 (766)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHC--CCCEEEEECHHHHHHHHHHH
T ss_conf 7899886048847755789987411125798679976788866999999999999855--98389990759999999998
Q ss_pred HH
Q ss_conf 99
Q 537021.9.peg.4 82 VL 83 (242)
Q Consensus 82 I~ 83 (242)
..
T Consensus 96 ~~ 97 (766)
T COG1204 96 FS 97 (766)
T ss_pred HH
T ss_conf 66
No 76
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.68 E-value=0.0059 Score=40.54 Aligned_cols=42 Identities=19% Similarity=0.171 Sum_probs=34.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 888799848889967999999999982478988956677687899
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA 75 (242)
+...||.++||||||+.-.+-+..-..+| ++.+.++|-....
T Consensus 266 GsstLi~Gp~GtGKTtla~qFl~~~a~~G---E~~l~~~FeE~~~ 307 (501)
T PRK09302 266 GSIILVSGATGTGKTLLVSKFAEAACRRG---ERCLLFAFEESRA 307 (501)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEEEECCHH
T ss_conf 94699988999888999999999998659---9089999967999
No 77
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI; InterPro: IPR014129 This entry represents TraI, which is a component of the relaxosome complex. In the process of conjugative plasmid transfer the relaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein ..
Probab=95.64 E-value=0.0037 Score=41.99 Aligned_cols=69 Identities=25% Similarity=0.237 Sum_probs=52.5
Q ss_pred HHHHHHCCCHHHHHHHC-----CCCCEEEEECCCCCHHHHHHH----HHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97323509489999827-----688879984888996799999----9999982-478988956677687899999999
Q 537021.9.peg.4 13 TIDLISQTKSEQLLASD-----PTRSAWVSANAGSGKTHILVQ----RVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHR 81 (242)
Q Consensus 13 ~~~~~~~~~~qq~~a~~-----~~~~~lV~A~aGSGKT~tL~~----rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~R 81 (242)
..++...++.=|+.+.+ .++=|+|.+.||.||||.+.. ++-.... -...+-+++.|.+|=+|+.||+..
T Consensus 1125 ~l~~~~~lT~Gqk~a~~li~~T~DrFv~~QGlAGvGK~T~~~sr~l~~~~~~~~~~~~~~~~~iGLAPTH~AV~El~~~ 1203 (2193)
T TIGR02760 1125 YLELLETLTHGQKQAIHLIVSTKDRFVAVQGLAGVGKTTMLESRDLEVVKAVKQAAESEQLQVIGLAPTHEAVGELKAA 1203 (2193)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEECCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
T ss_conf 5445355335667886410002362689821137782676553150467888873046886575137751677888860
No 78
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.64 E-value=0.096 Score=32.02 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=38.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8887998488899679999999999-8247898895667768789999999999996
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~l-l~~g~~P~~IL~lTFT~kAA~El~~RI~~~l 86 (242)
+.=++|-|.||+|||+.+.+...+. +..| ..++.+++ +....++..|+....
T Consensus 19 G~l~vi~g~pg~GKS~~~~~~a~~~a~~~g---~~Vl~~sl-Em~~~~~~~R~~a~~ 71 (186)
T pfam03796 19 GDLIIIAARPSMGKTAFALNIARNAALKQD---KPVLFFSL-EMSAEQLAERLLSSE 71 (186)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCC---CCEEEECC-CCCHHHHHHHHHHHH
T ss_conf 817999967999879999999999999709---96687547-552999999999986
No 79
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=95.63 E-value=0.015 Score=37.62 Aligned_cols=112 Identities=15% Similarity=0.118 Sum_probs=57.5
Q ss_pred CCCHHHHHHH-------CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 0948999982-------768887998488899679999999999824789889566776878999999999999677521
Q 537021.9.peg.4 19 QTKSEQLLAS-------DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 (242)
Q Consensus 19 ~~~~qq~~a~-------~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~ 91 (242)
++=+|=++|. +-.+....++.-|||||||+++-|+.+ .+. =||++..+==|+-|-.-....+.+.|-
T Consensus 10 P~GDQP~AI~~L~~~l~~G~~~QtLLGvTGsGKTFT~AnVIa~~-~rP-----TLV~aHNKTLAAQLY~EfKefFPeNAV 83 (667)
T TIGR00631 10 PAGDQPKAIAKLVEGLEAGEKEQTLLGVTGSGKTFTMANVIAQV-QRP-----TLVLAHNKTLAAQLYNEFKEFFPENAV 83 (667)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHH-CCC-----EEEECCCHHHHHHHHHHHHHHCCCCCE
T ss_conf 67881899999999985688714785321486278898999984-798-----499857776799999999863867724
Q ss_pred CCCCCCHHH--HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 674221464--997314799978999999999999831001321117999987
Q 537021.9.peg.4 92 LSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 (242)
Q Consensus 92 ~~~~~~~~~--l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ 142 (242)
--+.++..+ +..+....+ .-..+.. .+-++.+.+++++.+|+..|
T Consensus 84 EYFvSYYDYYQPEAYvP~~D--tyIEKda----SINdeIerlR~SAT~SLl~R 130 (667)
T TIGR00631 84 EYFVSYYDYYQPEAYVPSKD--TYIEKDA----SINDEIERLRLSATKSLLER 130 (667)
T ss_pred EEEEECCCCCCCCCCCCCCC--CEEECCC----CHHHHHHHHHHHHHHHHCCC
T ss_conf 52552032378732147988--4130455----30046767788988864237
No 80
>TIGR01587 cas3_core CRISPR-associated helicase Cas3; InterPro: IPR006474 This entry represents a highly conserved core region of the Cas3 sequences. The proteins are found in association with CRISPR repeat elements in a broad range of bacteria and Archaea . Cas3 appears to be a helicase, containing a DEAD/DEAH box region and conserved C-terminal domain. Some but not all members have an N-terminal HD domain region (IPR006674 from INTERPRO), these sequences are not included within this group..
Probab=95.63 E-value=0.021 Score=36.71 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=69.3
Q ss_pred EEEEECCCCCHHHHHHHHHHH---HHHCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHH--HHCCCCCC-CHHH---
Q ss_conf 799848889967999999999---982478988956677687899999999999----9677--52167422-1464---
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLR---LLLANAHPSTLLCLTHTKAAAAEMSHRVLE----IITA--WSHLSDEI-LSAE--- 100 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~---ll~~g~~P~~IL~lTFT~kAA~El~~RI~~----~l~~--~~~~~~~~-~~~~--- 100 (242)
++|.||-|.|||+.=..-..+ ++..+ .-+++...-+|+..++.|.+|+.+ .+++ ........ +.+.
T Consensus 2 ~v~~APTG~GKTe~aL~~A~~sah~~k~~-~~~~~I~alP~r~~~na~~~r~~~sash~Fg~P~~~~~~~ssrfnh~~~~ 80 (424)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALKSAHLIKKQ-KADKVIFALPTRVTINAMYRRLKESASHLFGSPELVLLLHSSRFNHLASS 80 (424)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHH-HHCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 68861789987899999998636664224-44010122026888999999999867754178543233455226789999
Q ss_pred -HHHHHCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -99731479997899999999999--98310013211179999875554
Q 537021.9.peg.4 101 -ITKIQGKKPNKSDMSKARHLLIT--ILETPGGLKVQTIHAFCEAIMQQ 146 (242)
Q Consensus 101 -l~~~~~~~~~~~~~~~~~~ll~~--~l~~~~~~~i~Ti~~f~~~ilr~ 146 (242)
..+......+.....+...++.. .---...+.|+|++..-..+.+.
T Consensus 81 ik~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~pi~~~T~d~~~~~~~~~ 129 (424)
T TIGR01587 81 IKLRKIKEKGDSEELEKLVKLYIHSNKKLFLKPITVCTIDQVLKSVFGE 129 (424)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCCHHEEECCCCCCCHHHHHEEEECC
T ss_conf 9987763047827999999852242121013178853412200000055
No 81
>PRK10436 hypothetical protein; Provisional
Probab=95.62 E-value=0.017 Score=37.39 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=23.7
Q ss_pred HHCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 82768887998488899679999999999
Q 537021.9.peg.4 27 ASDPTRSAWVSANAGSGKTHILVQRVLRL 55 (242)
Q Consensus 27 a~~~~~~~lV~A~aGSGKT~tL~~rv~~l 55 (242)
+..|.|=+||.++.||||||||-.-+..+
T Consensus 211 ~~~p~GliLvtGPTGSGKTTTLya~L~~l 239 (461)
T PRK10436 211 LQQPQGLVLVTGPTGSGKTVTLYSALQTL 239 (461)
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 83899779997899995699999999743
No 82
>PRK01172 ski2-like helicase; Provisional
Probab=95.62 E-value=0.036 Score=34.98 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHH---CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 1007888889732350948999982---7688879984888996799999999998247898895667768789999999
Q 537021.9.peg.4 4 HNSFQEHSETIDLISQTKSEQLLAS---DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 (242)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~qq~~a~---~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~ 80 (242)
-.+|+++-+.-.+ .. -+-|..+. .-+++++|.||-|||||.+---.+.+.+..| .+++.+++.++=++|..+
T Consensus 9 ~~~~~~~~~~~g~-~l-~p~Q~ea~~~~~~gkNllvsaPTgsGKTlvAe~ai~~~l~~~---~k~iyi~P~kAL~~EK~~ 83 (674)
T PRK01172 9 DDEFLNLFTGNDF-EL-YDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG---LKSIYIVPLRSLAMEKYE 83 (674)
T ss_pred CHHHHHHHHHCCC-CC-CHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHC---CCEEEECCHHHHHHHHHH
T ss_conf 9799999996799-88-989999999997799599978999869999999999999858---979998778999999999
Q ss_pred HHHH
Q ss_conf 9999
Q 537021.9.peg.4 81 RVLE 84 (242)
Q Consensus 81 RI~~ 84 (242)
-+..
T Consensus 84 ~~~~ 87 (674)
T PRK01172 84 ELSR 87 (674)
T ss_pred HHHH
T ss_conf 9998
No 83
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.59 E-value=0.22 Score=29.47 Aligned_cols=77 Identities=18% Similarity=0.104 Sum_probs=54.4
Q ss_pred HHHHHHHHHHCC--CHHHHHHH---CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 888897323509--48999982---7688879984888996799999999998247898895667768789999999999
Q 537021.9.peg.4 9 EHSETIDLISQT--KSEQLLAS---DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 (242)
Q Consensus 9 ~~~~~~~~~~~~--~~qq~~a~---~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~ 83 (242)
+--+.++-.... -+.|+.=+ --+.+.-++||.|.||||....--+++-..| .+.+.+-+|.-=+..-.+||.
T Consensus 70 ~~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kg---kr~yii~PT~~Lv~Q~~~kl~ 146 (1187)
T COG1110 70 EFEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKG---KRVYIIVPTTTLVRQVYERLK 146 (1187)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHH
T ss_conf 99999998638986078899999987378448982788765479999999987558---749999667899999999999
Q ss_pred HHHHH
Q ss_conf 99677
Q 537021.9.peg.4 84 EIITA 88 (242)
Q Consensus 84 ~~l~~ 88 (242)
+....
T Consensus 147 ~~~e~ 151 (1187)
T COG1110 147 KFAED 151 (1187)
T ss_pred HHHHH
T ss_conf 98865
No 84
>KOG0338 consensus
Probab=95.56 E-value=0.017 Score=37.29 Aligned_cols=86 Identities=23% Similarity=0.318 Sum_probs=55.2
Q ss_pred CCHHHHHH---------HHHHHHHCCCHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHHH-HHHH--CCCCHHHHHHHH
Q ss_conf 10078888---------89732350948999982--7688879984888996799999999-9982--478988956677
Q 537021.9.peg.4 4 HNSFQEHS---------ETIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVL-RLLL--ANAHPSTLLCLT 69 (242)
Q Consensus 4 ~~~~~~~~---------~~~~~~~~~~~qq~~a~--~~~~~~lV~A~aGSGKT~tL~~rv~-~ll~--~g~~P~~IL~lT 69 (242)
+.|||+-. +..-+..+|+=|++-|- -.++.++--|.-|||||-.-+--++ +||. .+++..++|+++
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred HHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHCCCHHHHCCHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEE
T ss_conf 65488600246999988743878887403310127752222564011468711456788999985273567612699983
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 687899999999999967752167
Q 537021.9.peg.4 70 HTKAAAAEMSHRVLEIITAWSHLS 93 (242)
Q Consensus 70 FT~kAA~El~~RI~~~l~~~~~~~ 93 (242)
+|+ |+.-.+-.....++...
T Consensus 260 PTR----ELaiQv~sV~~qlaqFt 279 (691)
T KOG0338 260 PTR----ELAIQVHSVTKQLAQFT 279 (691)
T ss_pred CCH----HHHHHHHHHHHHHHHHC
T ss_conf 508----99999999999987660
No 85
>KOG0350 consensus
Probab=95.54 E-value=0.015 Score=37.63 Aligned_cols=54 Identities=24% Similarity=0.295 Sum_probs=39.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88879984888996799999999998247-8988956677687899999999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g-~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
.|.++|.|+-|||||-.-+-=|+.+|... ++-=+-+++-+|+.=+....+-+..
T Consensus 183 ~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350 183 PRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred CCCEEEECCCCCCCEEEEHHHHHHHHCCCCCCCEEEEEEEEHHHHHHHHHHHHHH
T ss_conf 7754775578988456651378999703873405799995479999999999998
No 86
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=95.52 E-value=0.011 Score=38.74 Aligned_cols=32 Identities=34% Similarity=0.431 Sum_probs=24.4
Q ss_pred HHHHHCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 99982768887998488899679999999999
Q 537021.9.peg.4 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRL 55 (242)
Q Consensus 24 q~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~l 55 (242)
.+++.-|=|=+||=+|-||||||||=.-..+|
T Consensus 238 ~~li~rpHGIiLVTGPTGSGKtTTLYaaL~~L 269 (495)
T TIGR02533 238 ERLIKRPHGIILVTGPTGSGKTTTLYAALSRL 269 (495)
T ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99971889618841778985258899999863
No 87
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.51 E-value=0.012 Score=38.34 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=29.5
Q ss_pred HHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 8276888799848889967999999999982478988956677687
Q 537021.9.peg.4 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 (242)
Q Consensus 27 a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~ 72 (242)
++....+++|.+|.||||||.+-..+..+.. .-+.++|+.+-=|.
T Consensus 145 ~V~~r~nilI~G~TgsGKTTll~all~~i~~-~~p~eRivtIED~~ 189 (320)
T PRK13894 145 AVRAHRNILVIGGTGSGKTTLVNAIINEMVI-QDPTERVFIIEDTG 189 (320)
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCEEEECCHH
T ss_conf 9972875899858886568999999863202-69520177525878
No 88
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.46 E-value=0.019 Score=36.98 Aligned_cols=32 Identities=28% Similarity=0.329 Sum_probs=27.0
Q ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 98276888799848889967999999999982
Q 537021.9.peg.4 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 26 ~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
.+..|.|-+||-++-||||||||+.-|-++=.
T Consensus 120 ~~~~~~GLILVTGpTGSGKSTTlAamId~iN~ 151 (353)
T COG2805 120 LAESPRGLILVTGPTGSGKSTTLAAMIDYINK 151 (353)
T ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 98287966998679999678799999999841
No 89
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.43 E-value=0.02 Score=36.88 Aligned_cols=54 Identities=26% Similarity=0.311 Sum_probs=33.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHH--CC----CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6888799848889967999999999982--47----898895667768789999999999
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLL--AN----AHPSTLLCLTHTKAAAAEMSHRVL 83 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~--~g----~~P~~IL~lTFT~kAA~El~~RI~ 83 (242)
...-++|.|.+||||||-+-........ .| ..|.+|-+.+-.++.|.||-+.+.
T Consensus 64 ~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G 123 (845)
T COG1643 64 QNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLG 123 (845)
T ss_pred HCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 697899867998875878899999600166875996584389999999999998389867
No 90
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.41 E-value=0.0093 Score=39.14 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=28.3
Q ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 98276888799848889967999999999982478988956677687
Q 537021.9.peg.4 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 (242)
Q Consensus 26 ~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~ 72 (242)
.++....+++|.+|.||||||.+-. .+..+-.. ++|+.+-=|.
T Consensus 157 ~aV~~r~NIlIsGgTGSGKTTllnA-Ll~~IP~~---eRIvtIEDt~ 199 (343)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTMSKT-LISAIPPQ---ERLITIEDTL 199 (343)
T ss_pred HHHHCCCCEEEECCCCCCHHHHHHH-HHHCCCCC---CCEEEECCCC
T ss_conf 9997698899988898619999999-99628965---5279961150
No 91
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.41 E-value=0.034 Score=35.17 Aligned_cols=70 Identities=24% Similarity=0.298 Sum_probs=44.0
Q ss_pred HHHHCCCHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHHH-HHHHCC----CCH--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32350948999982--7688879984888996799999999-998247----898--8956677687899999999999
Q 537021.9.peg.4 15 DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVL-RLLLAN----AHP--STLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 15 ~~~~~~~~qq~~a~--~~~~~~lV~A~aGSGKT~tL~~rv~-~ll~~g----~~P--~~IL~lTFT~kAA~El~~RI~~ 84 (242)
-+..+|.=|++.+- ..++++++.|.-|||||..-+-=++ +++... -.+ -+.|+|++|+.=|..+.+-+.+
T Consensus 28 Gf~~PTpIQ~~aIP~iL~GkDvi~~A~TGSGKTLAYlLPiL~~Ll~~~~l~~~~~~~p~aLILvPTRELA~QI~~~~~~ 106 (574)
T PRK04537 28 GFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (574)
T ss_pred CCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 9998999999999999579988998489888999999999999983744345778996199977989999999999999
No 92
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.41 E-value=0.022 Score=36.49 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=22.4
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 2768887998488899679999999999
Q 537021.9.peg.4 28 SDPTRSAWVSANAGSGKTHILVQRVLRL 55 (242)
Q Consensus 28 ~~~~~~~lV~A~aGSGKT~tL~~rv~~l 55 (242)
..|.|-++|.+++||||||||..-+.++
T Consensus 77 ~~~~GlilitGptGSGKtTtl~a~l~~~ 104 (264)
T cd01129 77 EKPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 0899889997899997799999999864
No 93
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=95.40 E-value=0.021 Score=36.62 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=49.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 768887998488899679999999999824789889566776878999999999999677
Q 537021.9.peg.4 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 (242)
Q Consensus 29 ~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~ 88 (242)
.--.+.||-|..|+|||..+-.-+...+.+| .+|...|+--.-.-|+..|+...+..
T Consensus 114 ~~k~~~lv~AV~GaGKTEMif~~i~~al~~G---~~vciASPRvDVclEl~~Rlk~aF~~ 170 (441)
T COG4098 114 KQKEDTLVWAVTGAGKTEMIFQGIEQALNQG---GRVCIASPRVDVCLELYPRLKQAFSN 170 (441)
T ss_pred HHCCCEEEEEECCCCCHHHHHHHHHHHHHCC---CEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 7157689997427985101699999999659---86998468610117778999976214
No 94
>KOG0731 consensus
Probab=95.40 E-value=0.25 Score=29.12 Aligned_cols=122 Identities=15% Similarity=0.170 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8888897323509489999827688879984888996799999999998--24789889566776878999999999999
Q 537021.9.peg.4 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL--LANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 8 ~~~~~~~~~~~~~~~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll--~~g~~P~~IL~lTFT~kAA~El~~RI~~~ 85 (242)
||.++.-+.+---..=|+.-+-+.+-+|..++||||||-. +..+ ..|||-=.+-+--|...-..-=-.|++..
T Consensus 321 ~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLL-----AKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~l 395 (774)
T KOG0731 321 EELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLL-----AKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDL 395 (774)
T ss_pred HHHHHHHHHHCCHHHHHHCCCCCCCCEEEECCCCCCHHHH-----HHHHHCCCCCCEEEECHHHHHHHHCCCCHHHHHHH
T ss_conf 9999999984398999874776767517878999867899-----99885305896464133788887603434888999
Q ss_pred HHHHHCCCCCCCHH-HHHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67752167422146-499731479---99789999999999998310013211
Q 537021.9.peg.4 86 ITAWSHLSDEILSA-EITKIQGKK---PNKSDMSKARHLLITILETPGGLKVQ 134 (242)
Q Consensus 86 l~~~~~~~~~~~~~-~l~~~~~~~---~~~~~~~~~~~ll~~~l~~~~~~~i~ 134 (242)
+...-...+.-.+. .+....... ....-..+...-++.++-..|++...
T Consensus 396 f~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731 396 FPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 98743269807971454200312556666788807888999887875277677
No 95
>PRK09401 reverse gyrase; Reviewed
Probab=95.40 E-value=0.26 Score=29.02 Aligned_cols=63 Identities=17% Similarity=0.066 Sum_probs=48.7
Q ss_pred HHHHHHH---CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999982---76888799848889967999999999982478988956677687899999999999967
Q 537021.9.peg.4 22 SEQLLAS---DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 22 ~qq~~a~---~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~ 87 (242)
+.|+.=+ --+.+.-++||.|.||||-..---+++-.+| .+.+.+-+|+-=+....+|+.....
T Consensus 81 ~~Qr~WakR~~~g~SFaiiAPTG~GKTtfgl~~sly~a~kg---kks~~i~PT~~Lv~Q~~~kl~~~~~ 146 (1176)
T PRK09401 81 SLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMALYLAKKG---KKSYIIFPTRLLVEQVVEKLRKLAE 146 (1176)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 88999999986689748988899888899999999998659---8399996888999999999999999
No 96
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=95.38 E-value=0.027 Score=35.93 Aligned_cols=62 Identities=18% Similarity=0.138 Sum_probs=49.4
Q ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99827688879984888996799999999998247898895667768789999999999996775
Q 537021.9.peg.4 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 (242)
Q Consensus 25 ~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~ 89 (242)
..+.+.+.+|+|.|+-|||||.+--.-+...+.+| .++...|+.++=.+..-.++...+++.
T Consensus 128 ~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~---qrviYTsPIKALsNQKyrdl~~~fgdv 189 (1041)
T COG4581 128 IAILERGESVLVCAPTSSGKTVVAEYAIALALRDG---QRVIYTSPIKALSNQKYRDLLAKFGDV 189 (1041)
T ss_pred HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCC---CCEEECCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99984799579973378985559999999998718---944861630664206799999986005
No 97
>PRK13768 GTPase; Provisional
Probab=95.38 E-value=0.019 Score=36.98 Aligned_cols=27 Identities=26% Similarity=0.187 Sum_probs=21.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 879984888996799999999998247
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
-++|.++|||||||-......++-..|
T Consensus 4 ~~~ViGpaGSGKsT~~~~l~~~l~~~~ 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLVGALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 899989999988999999999999769
No 98
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=95.37 E-value=0.012 Score=38.42 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=35.3
Q ss_pred CCCC-EEEEECCCCCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6888-799848889967999999999-982478988956677687899999999999
Q 537021.9.peg.4 30 PTRS-AWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 30 ~~~~-~lV~A~aGSGKT~tL~~rv~~-ll~~g~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
|.|+ +||.++||||||.-..+-+.. ++..| ++++.+||... .+++..+...
T Consensus 17 ~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~g---e~~lYis~ee~-~~~l~~~~~~ 69 (231)
T pfam06745 17 PEGRVVLITGGPGTGKTIFGLQFLYNGALEYG---EPGVYVTLEEP-PEDLRENAKS 69 (231)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC---CCEEEEEECCC-HHHHHHHHHH
T ss_conf 29969999858972599999999999998658---96899981379-9999999998
No 99
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.36 E-value=0.031 Score=35.44 Aligned_cols=69 Identities=14% Similarity=0.094 Sum_probs=42.4
Q ss_pred HHHHHHHCCCHH--HHHHHCCCCC--EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 897323509489--9998276888--79984888996799999999998247898895667768789999999
Q 537021.9.peg.4 12 ETIDLISQTKSE--QLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 (242)
Q Consensus 12 ~~~~~~~~~~~q--q~~a~~~~~~--~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~ 80 (242)
++++++++.... -..+....+| +|+.+.=|+||||||.....++..+|.+.==..+=||--.|...|+.
T Consensus 116 ~l~~il~~~~~~~~~~~~~~~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~ 188 (340)
T COG0552 116 ALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEV 188 (340)
T ss_pred HHHHHHCCCCCCCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 9999846554444365523589867999993488863717999999999789869998233478999999999
No 100
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=95.35 E-value=0.019 Score=36.90 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 88799848889967999999999982478988
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~ 63 (242)
+.++|.+.||+||||.+-. ++....+|..+.
T Consensus 1 r~i~i~G~aG~GKTtll~k-l~~~wa~g~~~~ 31 (165)
T pfam05729 1 RTVILQGEAGSGKTTLLQK-LALLWAQGKLPQ 31 (165)
T ss_pred CEEEEECCCCCCHHHHHHH-HHHHHHCCCCCC
T ss_conf 9899982798989999999-999998698436
No 101
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=95.35 E-value=0.023 Score=36.43 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 88879984888996799999999998247
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
.++++|.|++|||||+++-.-+...+.+|
T Consensus 42 ~~H~lv~G~tGsGKT~~i~~li~~~~~rg 70 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIRELLASIRARG 70 (410)
T ss_pred HCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 27479988999988999999999999869
No 102
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.34 E-value=0.057 Score=33.61 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=36.0
Q ss_pred CCCCEEEEECCCCCHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68887998488899679-99999999982478988956677687899999999
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTH-ILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~-tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~R 81 (242)
-+++++|+||.|||||. .|+--+.+...+| ..|++-|-|+.=-+.+-++
T Consensus 276 ~~~~l~iEApTGtGKTlaYLlPai~~A~~~~---~~vvIST~T~~LQ~QL~~k 325 (932)
T PRK08074 276 DSRHALIEAGTGTGKTLAYLLPAAYFAKKKE---EPVIISTYTVQLQQQLLEK 325 (932)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHHH
T ss_conf 3884799868888713687999999999759---9099991628899999986
No 103
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.34 E-value=0.012 Score=38.34 Aligned_cols=52 Identities=12% Similarity=0.094 Sum_probs=34.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79984888996799999999998247898895667768789999999999996
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l 86 (242)
++..++.|+|||||++....++..+|-++.=|-+=||=-.|...++ ...+.+
T Consensus 78 I~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk-~~a~~l 129 (270)
T PRK06731 78 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ-DYVKTI 129 (270)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHH-HHHHHH
T ss_conf 9998889898899999999999867990899983888888999999-999981
No 104
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.33 E-value=0.02 Score=36.87 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=21.6
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 276888799848889967999999999
Q 537021.9.peg.4 28 SDPTRSAWVSANAGSGKTHILVQRVLR 54 (242)
Q Consensus 28 ~~~~~~~lV~A~aGSGKT~tL~~rv~~ 54 (242)
+...++++|.+++||||||+|-..+.+
T Consensus 22 v~~~~nIlIsG~tGSGKTTll~al~~~ 48 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 985998999899999899999999961
No 105
>KOG0952 consensus
Probab=95.29 E-value=0.027 Score=35.87 Aligned_cols=61 Identities=23% Similarity=0.302 Sum_probs=51.7
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 276888799848889967999999999982478-------9889566776878999999999999677
Q 537021.9.peg.4 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-------HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 (242)
Q Consensus 28 ~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~-------~P~~IL~lTFT~kAA~El~~RI~~~l~~ 88 (242)
=..+.+.||.||-|||||-+--.-|++++.++. +--+|+.+.++++=|.||.+...++|..
T Consensus 123 Y~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~ 190 (1230)
T KOG0952 123 YKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAP 190 (1230)
T ss_pred HCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCC
T ss_conf 14788779977789971678999999999850145543468713999925688999999998664242
No 106
>PRK10536 hypothetical protein; Provisional
Probab=95.29 E-value=0.027 Score=35.87 Aligned_cols=52 Identities=17% Similarity=0.253 Sum_probs=35.6
Q ss_pred CCCHHHHHHHC---CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 09489999827---688879984888996799999999998247898895667768
Q 537021.9.peg.4 19 QTKSEQLLASD---PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 (242)
Q Consensus 19 ~~~~qq~~a~~---~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT 71 (242)
+-|+.|+...+ .+.-+++.++||||||+.-+...+.++.++ ..++|++.-.+
T Consensus 59 pkt~~Q~~yi~~i~~~~ivf~~GpAGTGKT~lA~a~Al~~l~~~-~~~kIIltRP~ 113 (262)
T PRK10536 59 ARNEAQLHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPV 113 (262)
T ss_pred CCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCC
T ss_conf 89864999999986198399989998758999999999999858-88689996678
No 107
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=95.28 E-value=0.031 Score=35.45 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=46.9
Q ss_pred HHHCCCHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHHHHHHHC-CCCHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2350948999982--768887998488899679999999999824-789889-56677687899999999999967
Q 537021.9.peg.4 16 LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPST-LLCLTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 16 ~~~~~~~qq~~a~--~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~-g~~P~~-IL~lTFT~kAA~El~~RI~~~l~ 87 (242)
+..+|.=|++.+- ..++.+++.|.-|||||-.-.-=++..+.. ...+.. .|++++|+.-|..+.+-+.....
T Consensus 49 f~~pt~IQ~~~iP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~i~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~ 124 (513)
T COG0513 49 FEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGK 124 (513)
T ss_pred CCCCCHHHHHHCHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 8998989996587763699979986898717899999999997400455777569977999999999999999986
No 108
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.26 E-value=0.012 Score=38.36 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=37.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88879984888996799999999998247898895667768789999999999996
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l 86 (242)
.++++..++||||||+.-+...-.|+.+|. .++.+|.. ++-++|....
T Consensus 96 ~~gLlF~G~~GTGKThLA~aIan~Li~~G~---sVlf~t~~-----dLl~~lr~t~ 143 (242)
T PRK07952 96 IASFIFSGKPGTGKNHLAAAICNELLLRGK---SVLIITVA-----DIMSAMKDTF 143 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCC---EEEEEEHH-----HHHHHHHHHH
T ss_conf 871799789999789999999999998799---49997799-----9999999998
No 109
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.25 E-value=0.28 Score=28.70 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=28.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76888799848889967999999999982478988956677687899999999999
Q 537021.9.peg.4 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 29 ~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
+--.+++.-++|||||||. +..++.-+.. . ..-+.=|..-..++++-|.+
T Consensus 35 ~~~~s~Il~GPPG~GKTTl-A~iiA~~~~~--~---f~~lnA~~~gv~dir~ii~~ 84 (417)
T PRK13342 35 GRLSSMILWGPPGTGKTTL-ARIIAGATDA--E---FEALSAVTSGVKDLREVIEE 84 (417)
T ss_pred CCCCEEEEECCCCCCHHHH-HHHHHHHHCC--C---EEEEECCCCCHHHHHHHHHH
T ss_conf 9997599889699989999-9999998689--8---89961410388999999999
No 110
>CHL00176 ftsH cell division protein; Validated
Probab=95.16 E-value=0.036 Score=35.04 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=45.3
Q ss_pred HHHHHHCCCHHH---HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 973235094899---99827688879984888996799999999998247898895667768789999999999996775
Q 537021.9.peg.4 13 TIDLISQTKSEQ---LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 (242)
Q Consensus 13 ~~~~~~~~~~qq---~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~ 89 (242)
+-|+++-+..-+ +.-+-+.+-+|..+|||||||-. +.-++. ..|+|-=.|-.-.|...-+..=..|++..+...
T Consensus 189 l~EivdfLk~P~k~~~~Gak~PkGvLL~GpPGTGKTlL-AkAvAg--Ea~vpF~~~sgs~F~e~~vGvga~rVR~LF~~A 265 (631)
T CHL00176 189 LEEVVTFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLL-AKAIAG--EAEVPFFSISGSEFVEMFVGVGAARVRDLFKKA 265 (631)
T ss_pred HHHHHHHHCCHHHHHHCCCCCCCEEEEECCCCCCHHHH-HHHHHC--CCCCCEEEEEHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999983595887644996896589889899878899-999856--558846998837855642155589999999999
Q ss_pred H
Q ss_conf 2
Q 537021.9.peg.4 90 S 90 (242)
Q Consensus 90 ~ 90 (242)
.
T Consensus 266 r 266 (631)
T CHL00176 266 K 266 (631)
T ss_pred H
T ss_conf 8
No 111
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.07 E-value=0.021 Score=36.73 Aligned_cols=29 Identities=21% Similarity=0.153 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 88879984888996799999999998247
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
...+++.++||||||+.+......+...+
T Consensus 2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~ 30 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 97899999997029999999998726689
No 112
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=95.05 E-value=0.051 Score=33.97 Aligned_cols=45 Identities=27% Similarity=0.361 Sum_probs=27.0
Q ss_pred HHHHHCCC---CCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99982768---88799848889967999999999982478988956677
Q 537021.9.peg.4 24 QLLASDPT---RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 (242)
Q Consensus 24 q~~a~~~~---~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lT 69 (242)
++++..|+ .|++|.+++|||||+.|-. +++-..++.+-.++..++
T Consensus 24 ~~i~~~~~~~~npl~i~G~~G~GKTHLLqA-~~~~~~~~~~~~~v~yl~ 71 (219)
T pfam00308 24 LAVAEAPGKAYNPLFIYGGVGLGKTHLLHA-IGNYALRNFPNLRVVYLT 71 (219)
T ss_pred HHHHHCCCCCCCCEEEECCCCCCHHHHHHH-HHHHHHHHCCCCEEEEEE
T ss_conf 999967587678269988999988899999-999999849998288843
No 113
>PRK06526 transposase; Provisional
Probab=95.04 E-value=0.036 Score=35.05 Aligned_cols=39 Identities=23% Similarity=0.266 Sum_probs=30.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 688879984888996799999999998247898895667768
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT 71 (242)
-..++++.++||||||+..+..-...+.+|- +++.+|.+
T Consensus 97 ~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~---~v~f~~~~ 135 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGH---RVLFATAA 135 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCC---CEEEEEHH
T ss_conf 5887899899998689999999999998699---67998779
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.03 E-value=0.013 Score=38.05 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=19.0
Q ss_pred HCCCCC-EEEEECCCCCHHHHHHHHH
Q ss_conf 276888-7998488899679999999
Q 537021.9.peg.4 28 SDPTRS-AWVSANAGSGKTHILVQRV 52 (242)
Q Consensus 28 ~~~~~~-~lV~A~aGSGKT~tL~~rv 52 (242)
....++ ++|.||||.||||.++.-.
T Consensus 28 ~~~~~~l~lv~APaG~GKTtl~a~w~ 53 (903)
T PRK04841 28 GANNYRLVLVRSPAGYGKTTLASQWA 53 (903)
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 51589979997799988999999998
No 115
>KOG0330 consensus
Probab=95.00 E-value=0.038 Score=34.85 Aligned_cols=65 Identities=26% Similarity=0.239 Sum_probs=44.7
Q ss_pred HCCCHHHHHH--HCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5094899998--2768887998488899679999999999824789889566776878999999999
Q 537021.9.peg.4 18 SQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 (242)
Q Consensus 18 ~~~~~qq~~a--~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI 82 (242)
.+|.=|+.++ +.-++.++..|--|||||-+-+-=|+..|.+.-.+=..|++|+||.=|..+.+-.
T Consensus 83 ~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~f 149 (476)
T KOG0330 83 KPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQF 149 (476)
T ss_pred CCCHHHHHHCCHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHH
T ss_conf 8744445206554379857999435888402317999999971987744899648289999999999
No 116
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.99 E-value=0.017 Score=37.34 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=33.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 6888799848889967999999999982478988956677687899
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA 75 (242)
+++.++|.++||||||.-..+-+...+.+| +.++.+|+.....
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~g---e~vlyvs~~e~~~ 64 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREG---EPVLYVSTEESPE 64 (260)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHCC---CEEEEEEEECCHH
T ss_conf 997899993899868999999999776269---8589999206989
No 117
>KOG0733 consensus
Probab=94.98 E-value=0.11 Score=31.66 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHC------------CCC-------------
Q ss_conf 7888889732350948999982768887998488899679999999999824------------789-------------
Q 537021.9.peg.4 7 FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA------------NAH------------- 61 (242)
Q Consensus 7 ~~~~~~~~~~~~~~~~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~------------g~~------------- 61 (242)
+-|-..++..+..-..=+..-+.|.+.||+.++||+|||. |++-++.-+.- |+.
T Consensus 199 ~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~-lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~ 277 (802)
T KOG0733 199 LAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTS-LANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQ 277 (802)
T ss_pred HHHHHHHHHHHCCCHHHHHCCCCCCCCEEEECCCCCCHHH-HHHHHHHHCCCCEEEECCHHHHCCCCCCCHHHHHHHHHH
T ss_conf 9999999988528116866287799751644899864789-999975212885485141465315575228999999998
Q ss_pred ----------HHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf ----------889566776878-9999999999996
Q 537021.9.peg.4 62 ----------PSTLLCLTHTKA-AAAEMSHRVLEII 86 (242)
Q Consensus 62 ----------P~~IL~lTFT~k-AA~El~~RI~~~l 86 (242)
-++|=++|..|+ |-.||..||-..|
T Consensus 278 A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQL 313 (802)
T KOG0733 278 AKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQL 313 (802)
T ss_pred HHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 736697599851100136440457889999999999
No 118
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=94.91 E-value=0.014 Score=37.87 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=28.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHH---HCCCC--HHHHHHHHHHHHHHHHHH
Q ss_conf 88879984888996799999999998---24789--889566776878999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLL---LANAH--PSTLLCLTHTKAAAAEMS 79 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll---~~g~~--P~~IL~lTFT~kAA~El~ 79 (242)
+.+++.++|||||||- ++.|+.-+| .+... ..+|+-|.=...--..++
T Consensus 213 GHNlll~GPPGsGKTm-la~r~~giLP~L~~~EalE~~~v~S~~~~l~~~~~~~ 265 (505)
T TIGR00368 213 GHNLLLLGPPGSGKTM-LASRLQGILPPLTNEEALETARVLSLVGKLIDRKQWK 265 (505)
T ss_pred CCCEEEECCCCCCHHH-HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 5643767824962689-9987510578645126666788888887576523011
No 119
>pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075). This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function.
Probab=94.90 E-value=0.034 Score=35.19 Aligned_cols=50 Identities=22% Similarity=0.198 Sum_probs=30.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH--CC-----CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799848889967999999999982--47-----898895667768789999999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLL--AN-----AHPSTLLCLTHTKAAAAEMSHRVL 83 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~--~g-----~~P~~IL~lTFT~kAA~El~~RI~ 83 (242)
++|.++||||||-+.++.+..+.. .+ +.++.=++.++.++-+..+..+..
T Consensus 4 ~~V~G~pGtGKTvv~l~l~~~l~~~~~~~~~~~l~~N~~~~~~l~~~l~~~~~~~~~ 60 (348)
T pfam09848 4 FLVTGGPGTGKTVVALNLFAELSDSDLGRTAVFLSGNHPLVLVLYEALAGDLKVRKK 60 (348)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCHHHC
T ss_conf 999777993899999999999864402682089957866999999998604120010
No 120
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.88 E-value=0.21 Score=29.69 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=38.3
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88879984888996799999999998-2478988956677687899999999999967
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll-~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~ 87 (242)
+.-.+|-|+||.|||+.+.+-..++. .+|. .++.+|+ .....++..|+.....
T Consensus 13 G~L~vi~a~~g~GKS~~~~~la~~~a~~~g~---~V~~~Sl-Em~~~~~~~R~~s~~~ 66 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQGK---PVLFFSL-EMSKEQLLQRLLASES 66 (242)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCC---CEEEEEC-CCCHHHHHHHHHHHHH
T ss_conf 8189999689999999999999999997799---5999933-3538899999999982
No 121
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.84 E-value=0.02 Score=36.87 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=34.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68887998488899679999999999824789889566776878999999999999
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~ 85 (242)
-..+++..++||+|||+.++..--.++..|+ +++.+|.+ |+..+|...
T Consensus 104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~---sv~f~~~~-----el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGI---SVLFITAP-----DLLSKLKAA 151 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCC---EEEEEEHH-----HHHHHHHHH
T ss_conf 5882899899998799999999999998398---49998859-----999999998
No 122
>KOG0328 consensus
Probab=94.84 E-value=0.0021 Score=43.74 Aligned_cols=67 Identities=22% Similarity=0.268 Sum_probs=50.3
Q ss_pred HHCCCHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3509489999827--688879984888996799999999998247898895667768789999999999
Q 537021.9.peg.4 17 ISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 (242)
Q Consensus 17 ~~~~~~qq~~a~~--~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~ 83 (242)
..++.=||+++.. -++.|++.|--|||||.+.+--++..+.-++.--+.|++++|+.-|..+.+-|.
T Consensus 48 ekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~ 116 (400)
T KOG0328 48 EKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVIL 116 (400)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEEEEECCCCCCEEEEEEECCHHHHHHHHHHHHH
T ss_conf 781677761024563366147870478884478986631403434200357895470899999999999
No 123
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=94.82 E-value=0.081 Score=32.53 Aligned_cols=69 Identities=30% Similarity=0.331 Sum_probs=52.5
Q ss_pred CCHHHHHHH---CCCCCEEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 948999982---76888799848889967999999999982-478988956677687899999999999967752
Q 537021.9.peg.4 20 TKSEQLLAS---DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 (242)
Q Consensus 20 ~~~qq~~a~---~~~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~ 90 (242)
+=..|..|. ..+++++|..|.|||||-.---=|...+. .... +-|++-+||+=|+.=.+|+.+......
T Consensus 71 lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a--~AL~lYPtnALa~DQ~~rl~~~~~~~~ 143 (851)
T COG1205 71 LYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA--RALLLYPTNALANDQAERLRELISDLP 143 (851)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCC--EEEEEECHHHHHHHHHHHHHHHHHHCC
T ss_conf 0077999999997799889978998854589899999998308665--089980437767669999999998478
No 124
>PRK12377 putative replication protein; Provisional
Probab=94.81 E-value=0.037 Score=34.96 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=35.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68887998488899679999999999824789889566776878999999999999
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~ 85 (242)
-.++++..++||||||+.-+..-..++.+|. +++.+|- .++..++...
T Consensus 100 ~~~NlIf~G~pGtGKTHLA~AIg~~a~~~G~---sVlF~t~-----~dLv~~L~~a 147 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGR---SVIVVTV-----PDVMSRLHES 147 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCC---EEEEEEH-----HHHHHHHHHH
T ss_conf 8860899899998788999999999998799---6999889-----9999999999
No 125
>PRK08181 transposase; Validated
Probab=94.80 E-value=0.04 Score=34.68 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=29.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 88879984888996799999999998247898895667768
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT 71 (242)
..+|++.++||||||+.-+..-...+.+|. +++.+|.+
T Consensus 106 ~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~---~V~f~~~~ 143 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGW---RVLFTRTT 143 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCC---EEEEEEHH
T ss_conf 870899899998788999999999998799---39997899
No 126
>CHL00181 cbbX CbbX; Provisional
Probab=94.80 E-value=0.37 Score=27.87 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=19.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHH-CCC
Q ss_conf 88799848889967999999999982-478
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLLL-ANA 60 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~ 60 (242)
.+.+-.++|||||||+- ..++.++. -|+
T Consensus 60 ~h~vF~GnPGTGKTTVA-Rl~a~il~~lG~ 88 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVA-LKMADILYRLGY 88 (287)
T ss_pred CEEEEECCCCCCHHHHH-HHHHHHHHHCCC
T ss_conf 53888789986799999-999999998699
No 127
>PRK13766 Hef nuclease; Provisional
Probab=94.79 E-value=0.038 Score=34.87 Aligned_cols=63 Identities=24% Similarity=0.245 Sum_probs=46.2
Q ss_pred HHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999827-6888799848889967999999999982478988956677687899999999999967
Q 537021.9.peg.4 23 EQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 23 qq~~a~~-~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~ 87 (242)
|+.++.. -.++.+|..|-|+|||+.-+..+.+.+.. +|.+|+.+..|+-=+..=.+.+.+.++
T Consensus 20 Q~el~~~Al~~NtiVvLPTG~GKT~IA~lvi~~~l~~--~~gKilFLaPT~pLV~Qq~~~~~~~l~ 83 (764)
T PRK13766 20 QQLLAAKALKGNTLVVLPTGLGKTAIALLVIAERLQK--YGGKVLILAPTKPLVEQHAEFFRKFLN 83 (764)
T ss_pred HHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHHHHHHHHHCC
T ss_conf 9999999985898999599866899999999999974--898899985888899999999999709
No 128
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.78 E-value=0.016 Score=37.46 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=30.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 6888799848889967999999999982478988956677687
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~ 72 (242)
+-..|+..++||||||+. +.|+++.|..+..++++..+.|-.
T Consensus 193 tKknvIL~G~pGtGKT~l-Ak~lA~~l~g~~~~~rv~~Vqfhp 234 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFV-ARRLAYLLTGEKAPQRVNMVQFHQ 234 (459)
T ss_pred CCCCEEEECCCCCCHHHH-HHHHHHHHHCCCCCCCEEEEEECC
T ss_conf 588279658999887899-999999970788778468998358
No 129
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.77 E-value=0.032 Score=35.41 Aligned_cols=29 Identities=34% Similarity=0.501 Sum_probs=22.9
Q ss_pred HHCCC-CCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 82768-8879984888996799999999998
Q 537021.9.peg.4 27 ASDPT-RSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 27 a~~~~-~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
|++|+ |+||+.++||||||+ |+.++..+|
T Consensus 24 av~p~~ggvLi~G~~GtgKSt-laR~l~~iL 53 (334)
T PRK13407 24 AIDPGIGGVLVFGDRGTGKST-AVRALAALL 53 (334)
T ss_pred HCCCCCCEEEEECCCCCCHHH-HHHHHHHHC
T ss_conf 727898608997899865999-999999728
No 130
>PRK00254 ski2-like helicase; Provisional
Probab=94.76 E-value=0.075 Score=32.78 Aligned_cols=65 Identities=23% Similarity=0.187 Sum_probs=46.5
Q ss_pred HHCCCHHHHHHHC----CCCCEEEEECCCCCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3509489999827----6888799848889967999999999-982478988956677687899999999999
Q 537021.9.peg.4 17 ISQTKSEQLLASD----PTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 17 ~~~~~~qq~~a~~----~~~~~lV~A~aGSGKT~tL~~rv~~-ll~~g~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
+..+.+-|..+.. -+++++|.||-|||||.+---.+++ ++.+| .+++.++++++=++|--..+.+
T Consensus 21 I~~l~p~Q~e~l~~g~~~g~NllvsaPT~sGKTlvAElail~~~l~~~---~k~iyi~P~kALa~EK~~~f~~ 90 (717)
T PRK00254 21 IEELYPPQAEALTSGVLEGKNLLIAIPTASGKTLIAEIAMVNKLLREG---GKAVYLVPLKALAEEKFREFKD 90 (717)
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCC---CEEEEECCHHHHHHHHHHHHHH
T ss_conf 872689999998742336981899899887489999999999998529---9299992679999999999987
No 131
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=94.73 E-value=0.022 Score=36.51 Aligned_cols=100 Identities=11% Similarity=0.092 Sum_probs=50.9
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH----
Q ss_conf 27688879984888996799999999998--247898895667768789999999999996775216742214649----
Q 537021.9.peg.4 28 SDPTRSAWVSANAGSGKTHILVQRVLRLL--LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEI---- 101 (242)
Q Consensus 28 ~~~~~~~lV~A~aGSGKT~tL~~rv~~ll--~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~~~~~~~l---- 101 (242)
+=.++-||.++|||||||= .++.+ +.|||-=+|=.=-|=..-+.-=..|++..+.+.....+-=.+-+.
T Consensus 89 aKIPKGVLLvGPPGTGKTL-----LAKAvAGEA~VPFF~iSGSdFVEMFVGVGASRVRDLFeqAK~nAPCIIFIDEIDAV 163 (505)
T TIGR01241 89 AKIPKGVLLVGPPGTGKTL-----LAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAV 163 (505)
T ss_pred CCCCCCEEEECCCCCCHHH-----HHHHHHCCCCCCCEEECCCCEEECCCCCCCEEHHHHHHHHHHHCCCEEEEECHHHC
T ss_conf 8898714731787842467-----88752025889624740761011120564000144579999718970564010000
Q ss_pred -HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -97314799978999999999999831001321
Q 537021.9.peg.4 102 -TKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 (242)
Q Consensus 102 -~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i 133 (242)
.++......-.+ .+-.+-|+.+|-..|++.-
T Consensus 164 Gr~RGaG~lGGGn-DEREQTLNQLLVEMDGF~~ 195 (505)
T TIGR01241 164 GRQRGAGELGGGN-DEREQTLNQLLVEMDGFGT 195 (505)
T ss_pred CCCCCCCCCCCCC-CHHHHHHHHHHEECCCCCC
T ss_conf 3335643667654-1355433233133178589
No 132
>COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]
Probab=94.69 E-value=0.2 Score=29.81 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHH-CCCCCEEEE-ECCCCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHH
Q ss_conf 888889732350948999982-768887998-488899679999999999824-------78988956677687899999
Q 537021.9.peg.4 8 QEHSETIDLISQTKSEQLLAS-DPTRSAWVS-ANAGSGKTHILVQRVLRLLLA-------NAHPSTLLCLTHTKAAAAEM 78 (242)
Q Consensus 8 ~~~~~~~~~~~~~~~qq~~a~-~~~~~~lV~-A~aGSGKT~tL~~rv~~ll~~-------g~~P~~IL~lTFT~kAA~El 78 (242)
+.......+-.-.++|..++. ....+..++ +|||||||++++.-+..++.. .....+|..+..|.+++.++
T Consensus 191 d~i~~~~g~~~~~~~r~~a~~~~~~~~~~~~~~G~~t~~~~~i~kl~~~l~~~~~~~~~~~~~~~~i~l~~~~~k~~~~~ 270 (696)
T COG0507 191 DKIALNLGIPGNSPERIRAAALALLEEFSLISGGPGTGKTTTIAKLLLKLLEQPEIEVLKSGLAQRISLLAPTGKAALRL 270 (696)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHEECCCCCEEEHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHCCCHHHHHHH
T ss_conf 88987538877885877778887643765525788455679999999998554044433201115677634014888863
Q ss_pred HH--HHH
Q ss_conf 99--999
Q 537021.9.peg.4 79 SH--RVL 83 (242)
Q Consensus 79 ~~--RI~ 83 (242)
.+ .+.
T Consensus 271 ~e~~sl~ 277 (696)
T COG0507 271 TERGSLR 277 (696)
T ss_pred CCHHHHH
T ss_conf 1114599
No 133
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.66 E-value=0.038 Score=34.88 Aligned_cols=50 Identities=18% Similarity=0.150 Sum_probs=31.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHH--HHHHHHHHHHH
Q ss_conf 88879984888996799999999998-247898895667768--78999999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT--KAAAAEMSHRV 82 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll-~~g~~P~~IL~lTFT--~kAA~El~~RI 82 (242)
.+-+..++|.|.||||||+...++.. .+|- .+|..||.- |-+|.|--.-.
T Consensus 210 ~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~--~kV~lIT~DtyRigA~eQLk~Y 262 (412)
T PRK05703 210 GGVVALVGPTGVGKTTTLAKLAARYALEEGK--DKVALITLDTYRIGAVEQLKTY 262 (412)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCC--CEEEEEEECCCCHHHHHHHHHH
T ss_conf 7369998888875676999999999997299--8179998376777799999999
No 134
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.65 E-value=0.042 Score=34.52 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=21.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 68887998488899679999999999824
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLA 58 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~ 58 (242)
..++++|.++||||||.+. ..|..-+.+
T Consensus 54 ~~~n~~I~G~pGTGKT~~v-k~v~~~l~~ 81 (394)
T PRK00411 54 RPSNVLILGPPGTGKTTTV-KKVFEELEE 81 (394)
T ss_pred CCCCEEEECCCCCCHHHHH-HHHHHHHHH
T ss_conf 9984799889999899999-999999997
No 135
>PRK08506 replicative DNA helicase; Provisional
Probab=94.63 E-value=0.17 Score=30.20 Aligned_cols=104 Identities=14% Similarity=0.195 Sum_probs=54.2
Q ss_pred CCCEEEEEC-CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
Q ss_conf 888799848-8899679999999999824789889566776878999999999999677521674221464997314799
Q 537021.9.peg.4 31 TRSAWVSAN-AGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP 109 (242)
Q Consensus 31 ~~~~lV~A~-aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~~~~~~~l~~~~~~~~ 109 (242)
.|.++|+|+ ||-|||....+...+.+.+|. .++.++. ...+.++..|+....+.... .++-....
T Consensus 192 ~gdLiIIAARPsmGKTAfAlniA~~~a~~~~---~V~~FSL-EMs~~ql~~Rlls~~s~V~~----------~~lr~g~l 257 (473)
T PRK08506 192 KGDLIIIAARPSMGKTTLVLNMVLKALNQGK---GVAFFSL-EMPAEQLMLRMLSAKTSIPL----------QNLRTGDL 257 (473)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCC---CEEEEEC-CCCHHHHHHHHHHHHCCCCC----------CCCCCCCC
T ss_conf 5627999507998678999999999996599---6589822-47999999999997288783----------10006899
Q ss_pred CHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9789999999999998------31001321117999987555428
Q 537021.9.peg.4 110 NKSDMSKARHLLITIL------ETPGGLKVQTIHAFCEAIMQQFP 148 (242)
Q Consensus 110 ~~~~~~~~~~ll~~~l------~~~~~~~i~Ti~~f~~~ilr~~~ 148 (242)
+...+.+.......+- .....+.+..|.+-|-++.+.++
T Consensus 258 ~~~e~~~~~~a~~~l~~~~l~IdD~~~lti~~Ira~~Rr~k~~~~ 302 (473)
T PRK08506 258 DDDEWENLSDACDELSQKKLFVYDSGYVNIHQVRAQLRKLKSQHP 302 (473)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999999999999998659889988999999999999999999769
No 136
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.59 E-value=0.028 Score=35.81 Aligned_cols=52 Identities=21% Similarity=0.193 Sum_probs=35.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79984888996799999999998247898895667768789999999999996
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l 86 (242)
++++++-|+|||||++....++..+|-++-=+-+=||=-.|...|+ -..+++
T Consensus 209 IaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFRaAAiEQLk-~~g~rl 260 (407)
T PRK12726 209 ISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQ-GYADKL 260 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH-HHHHHH
T ss_conf 9998999897899999999999977991799970667788999999-999997
No 137
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=94.57 E-value=0.051 Score=33.97 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=34.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6888799848889967999999999982478988956677687899999999999
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
...++++.+++|||||+..+.....++.+|. +++.+|.+ +|.+++..
T Consensus 46 ~~~Nlll~G~~GtGKThLA~Ai~~~~~~~g~---~v~f~~~~-----~L~~~l~~ 92 (178)
T pfam01695 46 QAENLLLLGPPGVGKTHLACALGHQACRAGY---SVLFTRTP-----DLVEQLKR 92 (178)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCC---EEEEEECH-----HHHHHHHH
T ss_conf 5876899899998789999999999998698---59999616-----79999998
No 138
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.56 E-value=0.02 Score=36.79 Aligned_cols=49 Identities=12% Similarity=0.189 Sum_probs=33.4
Q ss_pred CCCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76888-799848889967999999999982478988956677687899999999
Q 537021.9.peg.4 29 DPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 (242)
Q Consensus 29 ~~~~~-~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~R 81 (242)
-|.|+ +||.+.||||||..-.+-+...+.+| ++++.+|+-+ ...++.+.
T Consensus 21 ip~gs~~li~G~~GtGKsi~~~~~~~~~l~~g---~~~~yis~e~-t~~~~i~q 70 (230)
T PRK08533 21 IPFGSIILIEGDESTGKSILSQRLAYGFLQNG---YSVSYVSSQL-TTTEFIKQ 70 (230)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC---CEEEEEEECC-CHHHHHHH
T ss_conf 88984899986899878999999999998789---8699999438-99999999
No 139
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.55 E-value=0.03 Score=35.52 Aligned_cols=47 Identities=23% Similarity=0.236 Sum_probs=34.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6888799848889967999999999982478988956677687899999999999
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
+..+++..+++|+|||+......-.++.+|. .|+.+|.+ ++-++|..
T Consensus 182 ~~~nLlf~G~~G~GKTfLa~~IA~ell~~g~---sViy~ta~-----~L~~~l~~ 228 (330)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGK---TVIYRTSD-----ELIENLRE 228 (330)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCC---EEEEEEHH-----HHHHHHHH
T ss_conf 8886698899999889999999999998799---49996299-----99999999
No 140
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.53 E-value=0.027 Score=35.85 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=24.5
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98488899679999999999824789889566776878999999999999
Q 537021.9.peg.4 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 36 V~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~ 85 (242)
+..|||||||+.|..-+.. +....+..=|-.=-.|. .=.+||++.
T Consensus 109 l~sSPGSGKTtLLe~ti~~-L~~~~~~aVIeGD~~T~----~DA~RI~~~ 153 (290)
T PRK10463 109 LVSSPGSGKTTLLTETLMR-LKDSVPCAVIEGDQQTV----NDAARIRAT 153 (290)
T ss_pred ECCCCCCCHHHHHHHHHHH-HHCCCCEEEEEECCCCH----HHHHHHHHC
T ss_conf 3069987889999999998-73367579996042356----679999976
No 141
>PRK09183 transposase/IS protein; Provisional
Probab=94.51 E-value=0.054 Score=33.75 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=33.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6888799848889967999999999982478988956677687899999999999
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
-..+|++.++||||||+.-+..-...+.+|. +++.+| +.+|.+++..
T Consensus 100 ~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~---~v~f~~-----~~~L~~~L~~ 146 (258)
T PRK09183 100 RNENIVLLGPSGVGKTHLAIALGYEAVRAGI---KVRFTT-----AADLLLQLST 146 (258)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCC---EEEEEE-----HHHHHHHHHH
T ss_conf 5886799899998689999999999998799---399978-----9999999999
No 142
>KOG0991 consensus
Probab=94.51 E-value=0.058 Score=33.53 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=22.3
Q ss_pred HHHHCCCCC-EEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 998276888-799848889967999999999982
Q 537021.9.peg.4 25 LLASDPTRS-AWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 25 ~~a~~~~~~-~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
..|-+.+-| +++.++||+||||++-...-.||.
T Consensus 41 via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991 41 VIAKEGNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred HHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 9997289986675279998616489999999838
No 143
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=94.46 E-value=0.037 Score=34.89 Aligned_cols=51 Identities=20% Similarity=0.166 Sum_probs=26.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799848889967999999999982478988956677687899999999999967
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~ 87 (242)
+|+.++||||||++. .-+++.+. .+.-+|-+-.+..+...+...+|...+.
T Consensus 1 iLl~GppGtGKT~~a-~~la~~~~--~~~~~v~~~~~~~~~~g~~~~~i~~~f~ 51 (131)
T pfam00004 1 LLLYGPPGTGKTTLA-KAVAKELG--APFIEISGSELVSKYVGESEKRLRELFE 51 (131)
T ss_pred CEEECCCCCCHHHHH-HHHHHHHC--CCCEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 987899999999999-99999978--9853324201222334506888999999
No 144
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=94.46 E-value=0.037 Score=34.97 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=31.8
Q ss_pred CCCEEEEECCCCCHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 88879984888996799-99999999824789889566776878999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~t-L~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~ 79 (242)
.+.++|+||.|||||.. |+--+.+...+| ++|++-|-|+.=-+.+-
T Consensus 47 ~~~l~iEAgTGtGKTlaYL~Pai~~a~~~~---~~vvIST~T~~LQeQL~ 93 (697)
T PRK11747 47 RHILVIEAGTGVGKSLAYLLAGIPIARAEK---KKLVISTATVALQEQLV 93 (697)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHCC---CCEEEECCCHHHHHHHH
T ss_conf 866999899972089999999999999829---97999889889999998
No 145
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.43 E-value=0.03 Score=35.55 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=22.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHH
Q ss_conf 799848889967999999999982-478988956677
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lT 69 (242)
+.+++|.|.|||||++...++... .|- .+|..+|
T Consensus 197 i~lvGPTGVGKTTTiAKLAa~~~l~~~~--~~V~lIT 231 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFVLEHGK--KKVALIT 231 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCC--CCEEEEE
T ss_conf 9997788875788999999999997389--9679998
No 146
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.40 E-value=0.06 Score=33.47 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=43.0
Q ss_pred HHHHHHCCCHHH---HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 973235094899---99827688879984888996799999999998247898895667768789999999999996775
Q 537021.9.peg.4 13 TIDLISQTKSEQ---LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 (242)
Q Consensus 13 ~~~~~~~~~~qq---~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~ 89 (242)
+-|+++-+..-+ +.-+-+.+-+|..++||||||.. +.-++. ..|++-=.|-.-.|..+-+.+=..|++..+...
T Consensus 164 l~EiVdfLk~P~k~~~~Gak~PkGvLL~GPPGtGKTlL-AkAvAg--Ea~vpF~~~sgsef~e~~vGvga~rVR~lF~~A 240 (644)
T PRK10733 164 VAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLL-AKAIAG--EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA 240 (644)
T ss_pred HHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHH-HHHHHC--CCCCEEEEEEHHHHHHEEEECCHHHHHHHHHHH
T ss_conf 99999981297999974997998517779899877899-999864--559808997847730222530689999999999
Q ss_pred H
Q ss_conf 2
Q 537021.9.peg.4 90 S 90 (242)
Q Consensus 90 ~ 90 (242)
.
T Consensus 241 r 241 (644)
T PRK10733 241 K 241 (644)
T ss_pred H
T ss_conf 9
No 147
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.026 Score=36.05 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=26.0
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 76888799848889967999999999982478988956677
Q 537021.9.peg.4 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 (242)
Q Consensus 29 ~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lT 69 (242)
.-+.++++.++||||||... .|.-.+|= -..+.++|-+|
T Consensus 196 AGgHnLl~~GpPGtGKTmla-~Rl~~lLP-pls~~E~lE~s 234 (490)
T COG0606 196 AGGHNLLLVGPPGTGKTMLA-SRLPGLLP-PLSIPEALEVS 234 (490)
T ss_pred HCCCCEEEECCCCCCHHHHH-HHHHCCCC-CCCHHHHHHHH
T ss_conf 43886787569988656764-23102599-98708889998
No 148
>KOG0345 consensus
Probab=94.35 E-value=0.074 Score=32.80 Aligned_cols=55 Identities=24% Similarity=0.372 Sum_probs=39.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHH---CCCCHHHH--HHHHHHHHHHHHHHHHHHH
Q ss_conf 6888799848889967999999999982---47898895--6677687899999999999
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTL--LCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~---~g~~P~~I--L~lTFT~kAA~El~~RI~~ 84 (242)
.+..|+|.|+-|||||-.-+-=+...|. ...+|.+| +++|+||.=|..+.+-+..
T Consensus 42 ~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~ 101 (567)
T KOG0345 42 KNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQP 101 (567)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 278568985678871066899999999861157896512479965719999999999999
No 149
>PRK06921 hypothetical protein; Provisional
Probab=94.29 E-value=0.061 Score=33.39 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=29.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Q ss_conf 68887998488899679999999999824-7898895667768
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~-g~~P~~IL~lTFT 71 (242)
...+++..+.||||||+..+...-.|+.+ |++ ++.++|.
T Consensus 115 ~~~~l~f~G~~G~GKThLa~aIa~~Ll~~~~~~---Vly~~~~ 154 (265)
T PRK06921 115 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVP---VLYFPFV 154 (265)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCE---EEEEEHH
T ss_conf 766279972898988999999999999962971---9998879
No 150
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.25 E-value=0.033 Score=35.27 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=26.9
Q ss_pred HHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 8276888799848889967999999999982478988956677687
Q 537021.9.peg.4 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 (242)
Q Consensus 27 a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~ 72 (242)
|+....+.||.+|-||||||+|-. +...+... ++|+++-=|.
T Consensus 169 av~~r~NILisGGTGSGKTTlLNa-l~~~i~~~---eRvItiEDta 210 (355)
T COG4962 169 AVGIRCNILISGGTGSGKTTLLNA-LSGFIDSD---ERVITIEDTA 210 (355)
T ss_pred HHHHCEEEEEECCCCCCHHHHHHH-HHHCCCCC---CEEEEEEEHH
T ss_conf 986201599967878879999999-97157976---5089981236
No 151
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=94.23 E-value=0.045 Score=34.30 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=18.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 688879984888996799999999998
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
+..+++.-++||+|||+. +..++.-+
T Consensus 49 ~l~h~lf~GPPG~GKTTl-AriiAk~~ 74 (234)
T pfam05496 49 ALDHVLLYGPPGLGKTTL-ANIIANEM 74 (234)
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHHHH
T ss_conf 766278878999988899-99999840
No 152
>PRK04195 replication factor C large subunit; Provisional
Probab=94.21 E-value=0.03 Score=35.53 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=17.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 8887998488899679999999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRL 55 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~l 55 (242)
.+++|..+|||+|||++. +-+++-
T Consensus 40 ~k~lLL~GPpGvGKTT~a-~~lAk~ 63 (403)
T PRK04195 40 KKALLLYGPPGVGKTSLA-HALAND 63 (403)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHH
T ss_conf 746998893998799999-999998
No 153
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.19 E-value=0.045 Score=34.35 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 88799848889967999999999982
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
|-+||.++.||||||||..-+.++-.
T Consensus 2 GliLitG~TGSGKTTtl~all~~i~~ 27 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 38999899999799999999985363
No 154
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=94.19 E-value=0.033 Score=35.31 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=43.5
Q ss_pred HCCCHHHHHHHC-------CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 509489999827-------6888799848889967999999999982478988956677687899999999999967752
Q 537021.9.peg.4 18 SQTKSEQLLASD-------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 (242)
Q Consensus 18 ~~~~~qq~~a~~-------~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~ 90 (242)
.++-+|-++|.. -.+.-..++..|||||+|+++-|..+ .+. -|+++..+-=|+.+-.-+...+.+.+
T Consensus 13 ~P~GDQP~AI~~L~~gi~~g~~~Q~LlGvTGSGKTfTmAnvI~~~-~rP-----tLVlahNKTLAAQLy~Efk~fFP~Na 86 (657)
T PRK05298 13 KPAGDQPQAIAELVEGIESGEKHQTLLGVTGSGKTFTMANVIARV-QRP-----TLVLAHNKTLAAQLYGEFKEFFPENA 86 (657)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH-CCC-----EEEECCCHHHHHHHHHHHHHHCCCCC
T ss_conf 999987999999998997499636997036785668999999986-897-----59976658899999999997688871
Q ss_pred C
Q ss_conf 1
Q 537021.9.peg.4 91 H 91 (242)
Q Consensus 91 ~ 91 (242)
-
T Consensus 87 V 87 (657)
T PRK05298 87 V 87 (657)
T ss_pred E
T ss_conf 7
No 155
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.15 E-value=0.06 Score=33.43 Aligned_cols=46 Identities=22% Similarity=0.362 Sum_probs=31.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79984888996799999999998247898895667768789999999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~ 83 (242)
++|.++||||||+.+.+-..+...+| ..++.+.+-. ...+.++|+.
T Consensus 2 ~li~g~~g~GKttl~~~~~~~~~~~~---~~~~~~~~ee-~~~q~~~~~~ 47 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKG---GKVVYVDIEE-EIEELTERLI 47 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC---CEEEEEECCC-CHHHHHHHHH
T ss_conf 89998999989999999999987639---9799998666-4489999999
No 156
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=94.10 E-value=0.034 Score=35.22 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=33.4
Q ss_pred CCHHHHHHHC------CCCC-EE-EEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9489999827------6888-79-98488899679999999999824789889566776878999999999999
Q 537021.9.peg.4 20 TKSEQLLASD------PTRS-AW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 20 ~~~qq~~a~~------~~~~-~l-V~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~ 85 (242)
+...++.|.. ..|- ++ ...+||||||+.|-.-+.+ +...++--=|..=--|+.= .+|+++.
T Consensus 15 L~~N~rlA~~Nr~~~~~~g~~~lNfmsspGSGKT~LiEk~~~~-~~~~~K~Avi~GD~~t~~D----A~RlR~~ 83 (225)
T TIGR00073 15 LSKNDRLAEKNRERFDKEGLLVLNFMSSPGSGKTTLIEKLIER-LDDEVKIAVIEGDVQTKND----ADRLRKY 83 (225)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHH-HCCCCCEEEEECCHHHHHH----HHHHHHC
T ss_conf 8988899999999998659789980258861158999999998-4578978999755322556----9999864
No 157
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.08 E-value=0.045 Score=34.31 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=27.3
Q ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHH
Q ss_conf 9827688879984888996799999999998247898-895667768
Q 537021.9.peg.4 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHT 71 (242)
Q Consensus 26 ~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P-~~IL~lTFT 71 (242)
.++....+++|.++.||||||.+-. +..-++| ++|+.+-=|
T Consensus 155 ~aV~~r~NilI~G~TgSGKTTll~a-----L~~~ip~~eRiitIEDt 196 (332)
T PRK13900 155 HAVISKKNIIISGGTSTGKTTFTNA-----ALREIPAIERLITVEDA 196 (332)
T ss_pred HHHHCCCCEEEECCCCCCHHHHHHH-----HHHCCCCCCCEEEECCC
T ss_conf 9986487199988889889999999-----98358953535663140
No 158
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=94.08 E-value=0.046 Score=34.26 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=18.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 8799848889967999999999982
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
+||+.++||||||+.. ..+++.+.
T Consensus 1 ~vll~Gp~G~GKT~la-~~la~~l~ 24 (139)
T pfam07728 1 GVLLVGPPGTGKSELA-ERLAAALS 24 (139)
T ss_pred CEEEECCCCCHHHHHH-HHHHHHCC
T ss_conf 9899989975699999-99999807
No 159
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=93.99 E-value=0.087 Score=32.33 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=45.4
Q ss_pred HCCCHHHHHHH----CCCC--C--EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 50948999982----7688--8--799848889967999999999982478988956677687899999999999967
Q 537021.9.peg.4 18 SQTKSEQLLAS----DPTR--S--AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 18 ~~~~~qq~~a~----~~~~--~--~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~ 87 (242)
.+|++|++++. |-.. | -||.+==|||||=|.+--.+..|..| -+...+.+|.==|.---+.+.+.|.
T Consensus 307 ~LT~aQ~r~v~EI~~DL~~~~pMnRLlQGDVGSGKT~VA~la~l~~i~~G---YQ~ALMAPTEiLA~QHy~~~~~~l~ 381 (721)
T TIGR00643 307 ELTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIESG---YQVALMAPTEILAEQHYDSLRNLLA 381 (721)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC---CEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 77677899999999861478753222110106638999999999998469---8099917768999999999999623
No 160
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.97 E-value=0.22 Score=29.42 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=21.0
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 27688879984888996799999999998
Q 537021.9.peg.4 28 SDPTRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 28 ~~~~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
..|.+.+|..++||||||. |+..++.-.
T Consensus 163 i~pPkGvLLyGPPGtGKTl-lAkAvA~e~ 190 (390)
T PRK03992 163 IEPPKGVLLYGPPGTGKTL-LAKAVAHET 190 (390)
T ss_pred CCCCCEEEEECCCCCCHHH-HHHHHHHHH
T ss_conf 9999727868989997899-999999874
No 161
>KOG0734 consensus
Probab=93.96 E-value=0.19 Score=30.00 Aligned_cols=96 Identities=23% Similarity=0.211 Sum_probs=48.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHCC
Q ss_conf 88879984888996799999999998--24789889566776878999999999999677521-6742214649973147
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLL--LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDEILSAEITKIQGK 107 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll--~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~-~~~~~~~~~l~~~~~~ 107 (242)
.+.||..++||||||- | ++.+ ..||+-=..-.--|-.--+..=..|++..+..... .+-.-+-..+-.....
T Consensus 337 PKGVLLvGPPGTGKTl-L----ARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~k 411 (752)
T KOG0734 337 PKGVLLVGPPGTGKTL-L----ARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGK 411 (752)
T ss_pred CCCEEEECCCCCCHHH-H----HHHHHCCCCCCEEECCCCCHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECHHHHCCC
T ss_conf 8853876899975569-9----9986055689747416620445422014899999999987349859997200220566
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9997899999999999983100132
Q 537021.9.peg.4 108 KPNKSDMSKARHLLITILETPGGLK 132 (242)
Q Consensus 108 ~~~~~~~~~~~~ll~~~l~~~~~~~ 132 (242)
+.. .....++.-++.++-..|++.
T Consensus 412 R~~-~~~~y~kqTlNQLLvEmDGF~ 435 (752)
T KOG0734 412 RNP-SDQHYAKQTLNQLLVEMDGFK 435 (752)
T ss_pred CCC-CHHHHHHHHHHHHHHHHCCCC
T ss_conf 786-277899989999999842867
No 162
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.95 E-value=0.043 Score=34.44 Aligned_cols=29 Identities=24% Similarity=0.535 Sum_probs=22.6
Q ss_pred HHCCC-CCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 82768-8879984888996799999999998
Q 537021.9.peg.4 27 ASDPT-RSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 27 a~~~~-~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
+.+|. |.|||.+.+|||||+.. .-+..+|
T Consensus 28 av~p~iGgVLi~G~~GtgKStlv-Rala~lL 57 (347)
T CHL00081 28 VIDPKIGGVMIMGDRGTGKSTTI-RALVDLL 57 (347)
T ss_pred HCCCCCCEEEEECCCCCCHHHHH-HHHHHHC
T ss_conf 25788786998789987499999-9999857
No 163
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.94 E-value=0.037 Score=34.89 Aligned_cols=24 Identities=33% Similarity=0.209 Sum_probs=18.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 87998488899679999999999824
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLLA 58 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~~ 58 (242)
+++|+|++|||||+.++ +-.++..
T Consensus 1 H~lvig~tGsGKt~~~v--ip~ll~~ 24 (384)
T cd01126 1 HVLVFAPTRSGKGVGFV--IPNLLTW 24 (384)
T ss_pred CEEEECCCCCCHHHHHH--HHHHHHC
T ss_conf 97998899997318999--9999818
No 164
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.91 E-value=0.16 Score=30.45 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=32.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHH
Q ss_conf 888799848889967999999999982478988--95667768789999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTKAAAAEMSH 80 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~--~IL~lTFT~kAA~El~~ 80 (242)
-.|+++-+|.|+|||+.|-.--.+....+..+. -+-.-.|++..+..+++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~ 164 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRD 164 (408)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHH
T ss_conf 8957998799997899999999999862998648850489989999999885
No 165
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.90 E-value=0.064 Score=33.23 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=31.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHC-CCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q ss_conf 7998488899679999999999824-789889566---77687899999999999967
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC---LTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~-g~~P~~IL~---lTFT~kAA~El~~RI~~~l~ 87 (242)
+..+++.|+||||||+...+++..+ +-+.-+|.. =|| |-||.|=-....+.++
T Consensus 177 i~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~Dty-RigAveQLktya~il~ 233 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY-RIGAKKQIQTYGDIMG 233 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC-CHHHHHHHHHHHHHHC
T ss_conf 99989988757879999999999862676773799980787-5889999999999978
No 166
>PRK10416 cell division protein FtsY; Provisional
Probab=93.85 E-value=0.048 Score=34.15 Aligned_cols=54 Identities=13% Similarity=-0.006 Sum_probs=35.4
Q ss_pred CCC--EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 888--7998488899679999999999824789889566776878999999999999
Q 537021.9.peg.4 31 TRS--AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 31 ~~~--~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~ 85 (242)
.+| +|+.+.=|+|||||+.....++-.+|-++-=+-+=||--+|...++ -..++
T Consensus 293 ~~P~VIl~vGvNG~GKTTTigKLA~~~~~~gkkVllaA~DTfRaAAieQL~-~w~~r 348 (499)
T PRK10416 293 KTPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQ-VWGQR 348 (499)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH-HHHCC
T ss_conf 998799997478787898999999999977995378840667568999999-98424
No 167
>pfam01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase. Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.
Probab=93.83 E-value=0.045 Score=34.32 Aligned_cols=20 Identities=20% Similarity=0.311 Sum_probs=16.1
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 79984888996799999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVL 53 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~ 53 (242)
++|.|.|||||||.|.+.+-
T Consensus 1 ~vV~gvpGsGKSt~I~~l~~ 20 (226)
T pfam01443 1 IVVHGVPGCGKSTLIRKLLR 20 (226)
T ss_pred CEEEECCCCCHHHHHHHHHH
T ss_conf 95940799988999999986
No 168
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.83 E-value=0.087 Score=32.31 Aligned_cols=27 Identities=26% Similarity=0.339 Sum_probs=20.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 8887998488899679999999999824
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLA 58 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~ 58 (242)
+...||.|+|+||||+.|-+ +++-|..
T Consensus 132 GQRgLIVAPPkaGKT~LLq~-IA~aI~~ 158 (379)
T PRK12608 132 GQRGLIVAPPRAGKTILLQQ-IAQAVAA 158 (379)
T ss_pred CCCCEEECCCCCCHHHHHHH-HHHHHHH
T ss_conf 74012745898657899999-9999985
No 169
>KOG0989 consensus
Probab=93.77 E-value=0.054 Score=33.78 Aligned_cols=37 Identities=19% Similarity=0.166 Sum_probs=24.9
Q ss_pred CCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 6888-799848889967999999999982478988956
Q 537021.9.peg.4 30 PTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66 (242)
Q Consensus 30 ~~~~-~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL 66 (242)
...| .|-.+|||||||.|+-.--..|......|.+++
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl 92 (346)
T KOG0989 55 RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVL 92 (346)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 68860786689998676899999998557423555424
No 170
>PTZ00110 helicase; Provisional
Probab=93.76 E-value=0.12 Score=31.28 Aligned_cols=66 Identities=21% Similarity=0.232 Sum_probs=40.3
Q ss_pred HCCCHHHHHH--HCCCCCEEEEECCCCCHHHHHH-HHHHHHHHCC-CCHH---HHHHHHHHHHHHHHHHHHHH
Q ss_conf 5094899998--2768887998488899679999-9999998247-8988---95667768789999999999
Q 537021.9.peg.4 18 SQTKSEQLLA--SDPTRSAWVSANAGSGKTHILV-QRVLRLLLAN-AHPS---TLLCLTHTKAAAAEMSHRVL 83 (242)
Q Consensus 18 ~~~~~qq~~a--~~~~~~~lV~A~aGSGKT~tL~-~rv~~ll~~g-~~P~---~IL~lTFT~kAA~El~~RI~ 83 (242)
.+|.=|.+.+ +-.++.++..|.-|||||-.-+ -.+.++..+. ..|. ..|+|++||.-|..+.+-+.
T Consensus 204 ~PTPIQ~qaIPiaLsGrDvIgiAqTGSGKTLAFlLP~l~hi~~q~~~~~~~gP~aLILaPTRELA~QI~~e~~ 276 (602)
T PTZ00110 204 EPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRPGDGPIVLVLAPTRELAEQIREQAL 276 (602)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 9998999998798569867998789788999999999999851634367899769997383999999999999
No 171
>KOG0920 consensus
Probab=93.71 E-value=0.1 Score=31.76 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=49.7
Q ss_pred HHHHHHHCC---CCCEEEEECCCCCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899998276---888799848889967999999999-98247898895667768789999999999996
Q 537021.9.peg.4 22 SEQLLASDP---TRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 (242)
Q Consensus 22 ~qq~~a~~~---~~~~lV~A~aGSGKT~tL~~rv~~-ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l 86 (242)
..+..+.+. ..-++|.+..|+||||-+...++. .+..| ++-+|+|.-.-+-||-.+.+|+..-.
T Consensus 176 ~~r~~Il~~i~~~qVvvIsGeTGcGKtTQvpQfiLd~~~~~~-~~~~IicTQPRRIsAIsvAeRVa~ER 243 (924)
T KOG0920 176 KMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-AACNIICTQPRRISAISVAERVAKER 243 (924)
T ss_pred HHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 789999999974966999578898712246699999998628-99738866775177899999998875
No 172
>pfam02399 Herpes_ori_bp Origin of replication binding protein. This Pfam family represents the herpesvirus origin of replication binding protein, probably involved in DNA replication.
Probab=93.66 E-value=0.083 Score=32.47 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=38.8
Q ss_pred CCCE-EEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8887-998488899679999999999824789889566776878999999999999
Q 537021.9.peg.4 31 TRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 31 ~~~~-lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~ 85 (242)
.+|| +|=||=||||||.|..-....|.. +--++|+++=-|.-++++.+|+...
T Consensus 48 ~r~V~VVRAPMGSGKTTALi~wL~~~L~~--~d~SvLVVSCRRSFT~tL~~Rf~~a 101 (829)
T pfam02399 48 ARPVLVVRAPMGSGKTTALIEWLRAALDS--PDTSVLVVSCRRSFTQTLLDRFNDA 101 (829)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCC--CCCEEEEEECHHHHHHHHHHHHHHC
T ss_conf 74468997688887189999999997378--6654999970167899999999866
No 173
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=93.65 E-value=0.046 Score=34.24 Aligned_cols=23 Identities=39% Similarity=0.328 Sum_probs=16.5
Q ss_pred EEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 98488899679999999999824
Q 537021.9.peg.4 36 VSANAGSGKTHILVQRVLRLLLA 58 (242)
Q Consensus 36 V~A~aGSGKT~tL~~rv~~ll~~ 58 (242)
|.++|||||||-...-..++-..
T Consensus 1 ViGpaGSGKTT~~~~l~~~l~~~ 23 (234)
T pfam03029 1 VVGGAGSGKTTFVGALSEILPLR 23 (234)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 98989898899999999999977
No 174
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.63 E-value=0.062 Score=33.37 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=32.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79984888996799999999998-2478988956677687899999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll-~~g~~P~~IL~lTFT~kAA~El~~R 81 (242)
+..++|.|.||||||+...+++. ..|.+..=|.+=||==.|+..|+.-
T Consensus 226 i~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktY 274 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRY 274 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 9998999988899999999999997499279995266537799999999
No 175
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=93.62 E-value=0.23 Score=29.35 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=28.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHH
Q ss_conf 87998488899679999999999824789889--56677687
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTK 72 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~--IL~lTFT~ 72 (242)
++||.+.+|||||..|-..+..++... +|++ +.++-|..
T Consensus 40 H~Lv~G~tGsGKS~~l~~li~sl~~~~-~p~~v~l~liD~K~ 80 (202)
T pfam01580 40 HLLIAGATGSGKSTFLNTLILSLAARH-SPEEVRLYLIDPKG 80 (202)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHC-CCCEEEEEEECCCC
T ss_conf 689965899980099999999998737-96206999974896
No 176
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.59 E-value=0.17 Score=30.34 Aligned_cols=55 Identities=18% Similarity=0.116 Sum_probs=37.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6888799848889967999999999982478988956677687899999999999967
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~ 87 (242)
--.+.+.-+|||+|||+.- ..++. ..+..-.++=++|++.|-..+.-++-.+...
T Consensus 47 ~l~SmIl~GPPG~GKTTlA-~liA~--~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~ 101 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLA-RLIAG--TTNAAFEALSAVTSGVKDLREIIEEARKNRL 101 (436)
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHH--HHCCCEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9860577789998888999-99987--6177669951523467999999999999872
No 177
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.58 E-value=0.057 Score=33.58 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 88799848889967999999999982478988
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~ 63 (242)
+.++|+|.|||||||.+-...+....+--.|+
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~ 254 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPE 254 (824)
T ss_pred HHEEEECCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 23334468887626799999999741525665
No 178
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=93.55 E-value=0.027 Score=35.92 Aligned_cols=192 Identities=13% Similarity=0.135 Sum_probs=77.9
Q ss_pred HHHHCCCHHHHHHHC-----C-CCCEEEEECCCCCHHHHHHHHHHHHHHC-CCCH-------HH-HHHHHHHHHHHHHHH
Q ss_conf 323509489999827-----6-8887998488899679999999999824-7898-------89-566776878999999
Q 537021.9.peg.4 15 DLISQTKSEQLLASD-----P-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHP-------ST-LLCLTHTKAAAAEMS 79 (242)
Q Consensus 15 ~~~~~~~~qq~~a~~-----~-~~~~lV~A~aGSGKT~tL~~rv~~ll~~-g~~P-------~~-IL~lTFT~kAA~El~ 79 (242)
|+..+..=|++++.. + .-+-+=-+.|||||||+- ..+.+|..+ ||-+ |+ =||==|==-.|.--|
T Consensus 20 EiYA~i~i~~kR~~~GLk~~~~~LHMiFKGNPGTGKTTVA-R~~gklf~emnvL~KGH~iE~ERADLVGEYIGHTAqkTR 98 (261)
T TIGR02881 20 EIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVA-RLLGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTR 98 (261)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHH-HHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHH
T ss_conf 9999999988887510114884478774278668438999-999999853375678867887622212232030048999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999967752167422146499731479997899999999999983100132111799998755542897588999851
Q 537021.9.peg.4 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAI 159 (242)
Q Consensus 80 ~RI~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl~~~f~i 159 (242)
+-|.+.+|.. ++.+-...+-+--....-++|...+-+.-++...-.|..+=++...--.-....-||++.|-|
T Consensus 99 e~~kkA~GGv-------LFiDEAYSLaRGGEKDFGKEAIDtLVK~mEd~~~~lvlILAGY~~EM~yFL~~NPGL~SRFPi 171 (261)
T TIGR02881 99 EVIKKALGGV-------LFIDEAYSLARGGEKDFGKEAIDTLVKAMEDQRNELVLILAGYSDEMDYFLSLNPGLRSRFPI 171 (261)
T ss_pred HHHHHHCCCC-------HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCC
T ss_conf 9999863880-------055777776148888766208889999876156986899708768999986207797776650
Q ss_pred CC---CHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHH----CCH-HHHHHHHHHHHHH
Q ss_conf 68---3789999999999999984327---803599999999941----696-7799999999984
Q 537021.9.peg.4 160 AD---EEQSKKLIEEAKKSTLASIMLD---NNEELKKAFYEILEI----SND-EDIETLISDIISN 214 (242)
Q Consensus 160 ~d---~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~----~~~-~~~~~~l~~~l~~ 214 (242)
.- |-+..+|+.-+-.-+-+....- ..+.+...+....+. .++ .-++|++..++..
T Consensus 172 ~i~FPdY~~eeL~~Ia~~m~~~ReY~Lt~~A~~~lr~~l~~~~~~~~~~~sNaR~vRN~iE~AIR~ 237 (261)
T TIGR02881 172 SIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLAKVDQLSSREFSNARYVRNIIEKAIRR 237 (261)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 541889988899999999986464225788999999997412444210057620124288999999
No 179
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=93.54 E-value=0.29 Score=28.61 Aligned_cols=41 Identities=27% Similarity=0.414 Sum_probs=31.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 888799848889967999999999982478988956677687
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~ 72 (242)
.+.+||.=..|||||+|.+..+-+|+..| ...+||-|.=.+
T Consensus 436 ~rraLl~MATGTGKTrtaial~~rLlk~~-~~kRILFLvDR~ 476 (1126)
T PRK11448 436 QREILLAMATGTGKTRTAIALMYRLLKAK-RFKRILFLVDRR 476 (1126)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCHH
T ss_conf 85468872488858989999999999658-767257985658
No 180
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.51 E-value=0.068 Score=33.06 Aligned_cols=48 Identities=10% Similarity=0.057 Sum_probs=32.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799848889967999999999982478988956677687899999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~R 81 (242)
+-.++|-|.||||||+...+++..++-+..=|-+=||==.|+..++.-
T Consensus 244 IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGAVEQLKTY 291 (436)
T PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDY 291 (436)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 999899998889999999999861698089998066347699999999
No 181
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.49 E-value=0.091 Score=32.18 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=20.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH-HCCCCHHHHH
Q ss_conf 79984888996799999999998-2478988956
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLL 66 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll-~~g~~P~~IL 66 (242)
++|.++|||||||.- .+++... ..-++.+.+|
T Consensus 2 i~l~G~PGsGKgTqa-~~La~~~~~~~is~gdlL 34 (194)
T cd01428 2 ILLLGPPGSGKGTQA-ERLAKKYGLPHISTGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHCCEEECHHHHH
T ss_conf 899899999879999-999999798467688999
No 182
>PRK06696 uridine kinase; Validated
Probab=93.48 E-value=0.27 Score=28.91 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=24.7
Q ss_pred HHHCCCCCEE--EEECCCCCHHHHHHHHHHHHHH-CCC
Q ss_conf 9827688879--9848889967999999999982-478
Q 537021.9.peg.4 26 LASDPTRSAW--VSANAGSGKTHILVQRVLRLLL-ANA 60 (242)
Q Consensus 26 ~a~~~~~~~l--V~A~aGSGKT~tL~~rv~~ll~-~g~ 60 (242)
....|++|++ |-+++|||||| ++++++..+. .|.
T Consensus 19 ~~~~p~rpl~VgIdG~~gSGKTT-lA~~La~~L~~~G~ 55 (227)
T PRK06696 19 LTLNLTRPLRVAIDGITASGKTT-FANELAEEIKKRGR 55 (227)
T ss_pred HHCCCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCC
T ss_conf 83599986899977899878799-99999999974699
No 183
>KOG0741 consensus
Probab=93.43 E-value=0.089 Score=32.24 Aligned_cols=55 Identities=24% Similarity=0.317 Sum_probs=37.2
Q ss_pred HHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHH
Q ss_conf 89999827--688879984888996799999999998---24789889566776878999
Q 537021.9.peg.4 22 SEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCLTHTKAAAA 76 (242)
Q Consensus 22 ~qq~~a~~--~~~~~lV~A~aGSGKT~tL~~rv~~ll---~~g~~P~~IL~lTFT~kAA~ 76 (242)
-||...++ +..++|+.++||||||..-+.....-- ..-++|+.+..++=+-|.+.
T Consensus 527 v~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~ 586 (744)
T KOG0741 527 VQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAH 586 (744)
T ss_pred HHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHHCCCCHHHHHHH
T ss_conf 998633466763589986699887688999997527998479737787037466788999
No 184
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=93.43 E-value=0.13 Score=31.16 Aligned_cols=53 Identities=23% Similarity=0.218 Sum_probs=37.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 688879984888996799999999-99824789889566776878999999999999
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~-~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~ 85 (242)
-++.++|+||.|||||.....-.+ +....| .++.+.|-|+..-..+-++....
T Consensus 33 ~~~~~~iEapTGtGKTl~yL~~al~~~~~~~---~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 33 GGEGLLIEAPTGTGKTLAYLLPALAYAREEG---KKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCC---CEEEEECCCHHHHHHHHHHHHHH
T ss_conf 6871899889985175999999998677529---75999899576888987621345
No 185
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=93.42 E-value=0.043 Score=34.45 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=30.0
Q ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 982768887998488899679999999999824789889566776878999999999
Q 537021.9.peg.4 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 (242)
Q Consensus 26 ~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI 82 (242)
.-.+|.+.||..+|||||||- |+.-+++-.. -||-+--+.|+....
T Consensus 151 vGI~PPKGvLLyGPPGtGKTL-lAKAvA~et~----------ATFIrvVgSElV~Ky 196 (364)
T TIGR01242 151 VGIEPPKGVLLYGPPGTGKTL-LAKAVAHETN----------ATFIRVVGSELVRKY 196 (364)
T ss_pred CCCCCCCCEEEECCCCCCHHH-HHHHHHCCCC----------CEEEEEEHHHHHHHH
T ss_conf 288989865700757976889-9998631455----------126886044444444
No 186
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.40 E-value=0.096 Score=32.00 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=29.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76888799848889967999999999982-478988956677687899999999999967
Q 537021.9.peg.4 29 DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 29 ~~~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~RI~~~l~ 87 (242)
...|.++|.+.+|||||+.+ ...+.-+. ..+.+ ..+..|.-...|+-.-|...++
T Consensus 41 ~~~g~~lltGe~GtGKTtll-r~l~~~l~~~~~~~---~~i~~~~l~~~~ll~~i~~~lg 96 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLI-RNLLKRLDQERVVA---AKLVNTRVDAEDLLRMVAADFG 96 (269)
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHHHHCCCCCEEE---EEECCCCCCHHHHHHHHHHHCC
T ss_conf 48965999729989889999-99998459345489---9976999999999999999859
No 187
>KOG0924 consensus
Probab=93.40 E-value=0.082 Score=32.49 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=42.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 688879984888996799999999998247---------8988956677687899999999999967
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN---------AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g---------~~P~~IL~lTFT~kAA~El~~RI~~~l~ 87 (242)
.+.-|+|.+--||||||.|+. +|...| ..|.++.+++--+.-+.||--.|....|
T Consensus 370 ~n~vvvivgETGSGKTTQl~Q---yL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924 370 ENQVVVIVGETGSGKTTQLAQ---YLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred HCCEEEEEECCCCCCHHHHHH---HHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 385799993588985016679---9986224558715435722789999999999985876453112
No 188
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=93.35 E-value=0.11 Score=31.51 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=39.3
Q ss_pred HHHHCCCCC--EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHH---HHHHHHHHHHHHHHHH
Q ss_conf 998276888--7998488899679999999999824789889566---7768789999999999
Q 537021.9.peg.4 25 LLASDPTRS--AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC---LTHTKAAAAEMSHRVL 83 (242)
Q Consensus 25 ~~a~~~~~~--~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~---lTFT~kAA~El~~RI~ 83 (242)
......++| .|+.+-=|+||||||.--.-++..+| -+++. =||-=+|.+-|..=..
T Consensus 74 ~~~~~~~kp~Vil~VGVNG~GKTTTIaKLA~~l~~~G---k~V~laAgDTFRAAA~EQL~~Wa~ 134 (284)
T TIGR00064 74 EELPEEKKPNVILFVGVNGVGKTTTIAKLANKLKKQG---KSVLLAAGDTFRAAAIEQLEVWAK 134 (284)
T ss_pred HHCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHCC---CEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 4301478977999984408860102889999998749---908998275247999999999898
No 189
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.34 E-value=0.05 Score=34.00 Aligned_cols=69 Identities=17% Similarity=0.216 Sum_probs=39.3
Q ss_pred HHCCCHHHHHHHC-------CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3509489999827-------688879984888996799999999998247898895667768789999999999996775
Q 537021.9.peg.4 17 ISQTKSEQLLASD-------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 (242)
Q Consensus 17 ~~~~~~qq~~a~~-------~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~ 89 (242)
..++-+|..+|.. -.+.-..++.-|||||+|+++-|... ... -|+++..+-=|+.+-.-....+.+.
T Consensus 11 f~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~-~rP-----tLV~AhNKTLAaQLy~Efk~fFP~N 84 (663)
T COG0556 11 FKPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKV-QRP-----TLVLAHNKTLAAQLYSEFKEFFPEN 84 (663)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHH-CCC-----EEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 8999986799999998886386025886203688310799999986-897-----1998255547999999999768676
Q ss_pred HC
Q ss_conf 21
Q 537021.9.peg.4 90 SH 91 (242)
Q Consensus 90 ~~ 91 (242)
+-
T Consensus 85 aV 86 (663)
T COG0556 85 AV 86 (663)
T ss_pred CE
T ss_conf 45
No 190
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.32 E-value=0.18 Score=30.05 Aligned_cols=39 Identities=13% Similarity=0.246 Sum_probs=25.0
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 768887998488899679999999999824789889566776
Q 537021.9.peg.4 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 (242)
Q Consensus 29 ~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTF 70 (242)
.+..++.+.+++|+|||+.|-.-.......| .++..++.
T Consensus 43 ~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~---~~~~yl~~ 81 (235)
T PRK08084 43 EHSGYIYLWGREGAGRSHLLHAACAELSQRG---DAVGYVPL 81 (235)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCC---CCEEEEEH
T ss_conf 8987699989999888999999999997079---85799877
No 191
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.28 E-value=0.12 Score=31.38 Aligned_cols=52 Identities=17% Similarity=0.094 Sum_probs=33.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79984888996799999999998247898895667768789999999999996
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l 86 (242)
+++.+-=|||||||.+....++-.+|-+|-=+-+=||-.+|... ..-+.+.+
T Consensus 100 im~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~eQ-L~~la~~~ 151 (433)
T PRK00771 100 ILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYEQ-LKQLCEKI 151 (433)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH-HHHHHHHC
T ss_conf 99973788978999999999999779946785067883689999-99999863
No 192
>KOG0744 consensus
Probab=93.25 E-value=0.071 Score=32.95 Aligned_cols=88 Identities=17% Similarity=0.250 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHC---CCCCEEEEECCCCCHHHHHHHHHHHHH--HCCCCH---------HHHH
Q ss_conf 97310078888897323509489999827---688879984888996799999999998--247898---------8956
Q 537021.9.peg.4 1 MIYHNSFQEHSETIDLISQTKSEQLLASD---PTRSAWVSANAGSGKTHILVQRVLRLL--LANAHP---------STLL 66 (242)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~qq~~a~~---~~~~~lV~A~aGSGKT~tL~~rv~~ll--~~g~~P---------~~IL 66 (242)
.||-++..|+--.+-..+..=++-+.-.. -++-+|+-+|||||||..--.....|- .++--+ .++-
T Consensus 144 Liyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLF 223 (423)
T KOG0744 144 LIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLF 223 (423)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHEEEECCCCCCCEEEEEEHHHHH
T ss_conf 76413289999999999988876178874466414899857999882279999987514652376444069997046788
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6--776878999999999999677
Q 537021.9.peg.4 67 C--LTHTKAAAAEMSHRVLEIITA 88 (242)
Q Consensus 67 ~--lTFT~kAA~El~~RI~~~l~~ 88 (242)
- ..=+-|-.+-|-..|.+.+.+
T Consensus 224 SKWFsESgKlV~kmF~kI~ELv~d 247 (423)
T KOG0744 224 SKWFSESGKLVAKMFQKIQELVED 247 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 988712113899999999999717
No 193
>KOG0727 consensus
Probab=93.19 E-value=0.1 Score=31.90 Aligned_cols=126 Identities=21% Similarity=0.202 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHH-HCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 788888973235094899998-2768887998488899679999999999824789889566776878999999999999
Q 537021.9.peg.4 7 FQEHSETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 7 ~~~~~~~~~~~~~~~~qq~~a-~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~ 85 (242)
-||.-++.++--.-.+-.+++ .||.+.||..++||||||- |+..|++.-.. .-=++..--|-.|-..|=-.-++..
T Consensus 164 kqeireavelplt~~~ly~qigidpprgvllygppg~gktm-l~kava~~t~a--~firvvgsefvqkylgegprmvrdv 240 (408)
T KOG0727 164 KQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTM-LAKAVANHTTA--AFIRVVGSEFVQKYLGEGPRMVRDV 240 (408)
T ss_pred HHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHH-HHHHHHHCCCH--HEEEECCHHHHHHHHCCCCHHHHHH
T ss_conf 89999888365307889997088998622775799975789-99998612611--1446301899999855483899999
Q ss_pred HHHHHC-CCCCCCHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 677521-6742214649973147999--7899999999999983100132111
Q 537021.9.peg.4 86 ITAWSH-LSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQT 135 (242)
Q Consensus 86 l~~~~~-~~~~~~~~~l~~~~~~~~~--~~~~~~~~~ll~~~l~~~~~~~i~T 135 (242)
+.-... .+..-+-..+..+....++ .....+.++.+-..+.+.+++.-.|
T Consensus 241 frlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~ 293 (408)
T KOG0727 241 FRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT 293 (408)
T ss_pred HHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99876169837986224567664124444631899999999997514767666
No 194
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=93.18 E-value=0.053 Score=33.84 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=25.7
Q ss_pred HHHHHHHCCCHHHHHHH-CCCCC-EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 89732350948999982-76888-79984888996799999999998
Q 537021.9.peg.4 12 ETIDLISQTKSEQLLAS-DPTRS-AWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 12 ~~~~~~~~~~~qq~~a~-~~~~~-~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
+.-++-.++..+-.-.. +-+|+ +||.+|||+||||+|--.---|.
T Consensus 97 Ki~~v~~wl~a~~Le~~~~rGGs~LLi~GPsGCgKsT~~k~LsKelg 143 (670)
T TIGR00602 97 KIEEVEEWLKAQVLESAKKRGGSILLITGPSGCGKSTTIKILSKELG 143 (670)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 79999999752002045667753788417558844789999988864
No 195
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.17 E-value=0.097 Score=31.99 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=24.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHH
Q ss_conf 799848889967999999999982-478988956677
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lT 69 (242)
+..++|.|.||||||+...++... +|- ++|..||
T Consensus 179 ~alVGPTGVGKTTTiAKLAAr~~l~~g~--~kVaLIT 213 (404)
T PRK06995 179 FALVGPTGVGKTTTTAKLAARCVMRHGA--SKVALLT 213 (404)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEE
T ss_conf 8986688876375899999999998389--8379997
No 196
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.15 E-value=0.14 Score=30.88 Aligned_cols=45 Identities=24% Similarity=0.285 Sum_probs=29.8
Q ss_pred HHHHHHHHCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 8897323509489999827688879984888996799999999998
Q 537021.9.peg.4 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 11 ~~~~~~~~~~~~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
++...-+.....+.. +.-+.|-+..++|.|-||||||+...++..
T Consensus 184 ~~~l~~~~~~~~~~~-~~~~~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 184 SEKLRKLLLSLIENL-IVEQKRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred HHHHHHHHHHHCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999999887644111-124685799989988758879999999997
No 197
>KOG0327 consensus
Probab=93.13 E-value=0.22 Score=29.44 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=43.6
Q ss_pred HCCCHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 50948999982--7688879984888996799999999998247898895667768789999999999996
Q 537021.9.peg.4 18 SQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 (242)
Q Consensus 18 ~~~~~qq~~a~--~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l 86 (242)
-++.=||+++. ..+..+.+.|-+|||||.+-.--++..+.-..+-.+++.+.+|+ ||..++.+..
T Consensus 48 kPSaIQqrAI~p~i~G~dv~~qaqsgTgKt~af~i~ilq~iD~~~ke~qalilaPtr----eLa~q~~~v~ 114 (397)
T KOG0327 48 KPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTR----ELAQQIQKVV 114 (397)
T ss_pred CCHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHH----HHHHHHHHHH
T ss_conf 822777634355346874467630254411466788875137416777798861327----8889899998
No 198
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.13 E-value=0.29 Score=28.61 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=40.5
Q ss_pred CCCC-EEEEECCCCCHHHHHHHHHHHHHH--CCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 6888-799848889967999999999982--4789889566--77687899999999999967752167422146499
Q 537021.9.peg.4 30 PTRS-AWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLC--LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102 (242)
Q Consensus 30 ~~~~-~lV~A~aGSGKT~tL~~rv~~ll~--~g~~P~~IL~--lTFT~kAA~El~~RI~~~l~~~~~~~~~~~~~~l~ 102 (242)
+.|. .+++++-||||||+| .-|-+|+. .| +|+. -.-++--..|||-+|.=.++...-.++-+....+.
T Consensus 25 ~~gef~vliGpSGsGKTTtL-kMINrLiept~G----~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa 97 (309)
T COG1125 25 EEGEFLVLIGPSGSGKTTTL-KMINRLIEPTSG----EILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIA 97 (309)
T ss_pred CCCEEEEEECCCCCCHHHHH-HHHHCCCCCCCC----EEEECCEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 59728999878997578799-999605588885----38989904465888999875335422215677635987787
No 199
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=93.12 E-value=0.14 Score=30.88 Aligned_cols=30 Identities=20% Similarity=0.465 Sum_probs=21.1
Q ss_pred HCCCCCEE--EEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 27688879--98488899679999999999824
Q 537021.9.peg.4 28 SDPTRSAW--VSANAGSGKTHILVQRVLRLLLA 58 (242)
Q Consensus 28 ~~~~~~~l--V~A~aGSGKT~tL~~rv~~ll~~ 58 (242)
.+|+++++ |.++|||||||.- ..++..|.+
T Consensus 29 ~~~~rR~lIgIaG~pGSGKSTlA-~~l~~~L~~ 60 (230)
T PRK09270 29 AEPQRRTVVGIAGPPGAGKSTLA-ETLWEALSQ 60 (230)
T ss_pred CCCCCEEEEEEECCCCCCHHHHH-HHHHHHHHH
T ss_conf 59997189999899988999999-999999862
No 200
>PRK10867 signal recognition particle protein; Provisional
Probab=93.09 E-value=0.094 Score=32.06 Aligned_cols=76 Identities=16% Similarity=0.124 Sum_probs=36.8
Q ss_pred HHHHHHHHCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88973235094899998276888799848889967999999999982-478988956677687899999999999967
Q 537021.9.peg.4 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 11 ~~~~~~~~~~~~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~RI~~~l~ 87 (242)
.++++++...++.-.....+..-+++.+-=|||||||++....++-. .|-++-=+-|=||--+|...+ .-+.+.++
T Consensus 80 ~eL~~lLg~~~~~l~~~~~~p~VIm~vGLqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~RpaA~eQL-~~la~~~~ 156 (453)
T PRK10867 80 NELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQL-ETLAEQVG 156 (453)
T ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH-HHHHHHCC
T ss_conf 999998588876663378999699997468885185899999999973898379855887705899999-99998519
No 201
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=93.08 E-value=0.29 Score=28.65 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=35.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8887998488899679999999999824789889566776878999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~ 79 (242)
...+||+=.+|||||+|-...+-+|+..| ...+||-++=+|.=...-.
T Consensus 185 ~~raLlvMATGTGKTrTAiaii~rL~r~~-~~KRVLFLaDR~~Lv~QA~ 232 (875)
T COG4096 185 QNRALLVMATGTGKTRTAIAIIDRLIKSG-WVKRVLFLADRNALVDQAY 232 (875)
T ss_pred CCEEEEEEECCCCCCEEHHHHHHHHHHCC-HHHEEEEEECHHHHHHHHH
T ss_conf 74489997058885231999999999614-1430567612678999999
No 202
>pfam05876 Terminase_GpA Phage terminase large subunit (GpA). This family consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities.
Probab=93.05 E-value=0.12 Score=31.35 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=44.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-HHHHHHH
Q ss_conf 887998488899679999999999824789889566776878999999-9999996
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS-HRVLEII 86 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~-~RI~~~l 86 (242)
.-|.|..||-+|||.++.+-+.|.+.. +|..||++..|..+|+++. +||...+
T Consensus 34 ~~V~~~k~aQ~GkT~~~~n~igy~i~~--~P~p~l~v~Pt~~~a~~~s~~rl~Pmi 87 (552)
T pfam05876 34 ERVVFMKSAQVGKTELLLNWIGYFIDH--DPAPMLVVQPTDDDAKRFSKDRLDPMI 87 (552)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHH--CCCCEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 499999578703889999999886630--898879994189999999999899998
No 203
>KOG1532 consensus
Probab=93.00 E-value=0.11 Score=31.63 Aligned_cols=32 Identities=28% Similarity=0.248 Sum_probs=24.6
Q ss_pred CCCC--EEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 6888--7998488899679999999999824789
Q 537021.9.peg.4 30 PTRS--AWVSANAGSGKTHILVQRVLRLLLANAH 61 (242)
Q Consensus 30 ~~~~--~lV~A~aGSGKT~tL~~rv~~ll~~g~~ 61 (242)
+.+| ++|++=|||||||-+-..+.++-.++.+
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 5687079999447788413999999998623699
No 204
>pfam10236 DAP3 Mitochondrial ribosomal death-associated protein 3. This is a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.99 E-value=0.14 Score=30.90 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=27.4
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 27688879984888996799999999998247
Q 537021.9.peg.4 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 28 ~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
..+....++-+.+|||||.+|.+-+.+...+|
T Consensus 20 ~~~~~r~vL~G~~GsGKS~~L~q~v~~A~~~~ 51 (274)
T pfam10236 20 SKKVVRFVLTGERGSGKSVLLAQAMAYALTQG 51 (274)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 79951899889799779999999999998599
No 205
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=92.94 E-value=0.16 Score=30.43 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 888799848889967999999999982478988956677
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lT 69 (242)
..++|..++||||||.. +.|+..++ -...+++.+-+|
T Consensus 22 ~H~lLl~GpPG~GKTml-A~rl~~iL-P~l~~~e~le~~ 58 (207)
T pfam01078 22 GHNLLMIGPPGSGKTML-AKRLPGIL-PPLTEQEALEVT 58 (207)
T ss_pred CCCEEEECCCCCCHHHH-HHHHHCCC-CCCCHHHHHHHH
T ss_conf 87589788998029999-97630148-998789988777
No 206
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.93 E-value=0.04 Score=34.67 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=20.9
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99848889967999999999982478988956677
Q 537021.9.peg.4 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 (242)
Q Consensus 35 lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lT 69 (242)
=|.+|+|||||| ++..+..++.......++.+++
T Consensus 3 GIaG~sgSGKST-~a~~l~~~l~~~~~~~~v~ii~ 36 (220)
T cd02025 3 GIAGSVAVGKST-TARVLQALLSRWPDHPNVELIT 36 (220)
T ss_pred EEECCCCCCHHH-HHHHHHHHHHHCCCCCCEEEEE
T ss_conf 978899877999-9999999860026999489997
No 207
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.92 E-value=0.18 Score=30.13 Aligned_cols=52 Identities=17% Similarity=0.191 Sum_probs=33.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 879984888996799999999998247-8988956677687899999999999
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~~g-~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
-++|.+-||+||||++-.-...++... +..+.+..=+=-++.--|-++-+++
T Consensus 6 vvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~Rk 58 (189)
T COG2019 6 VVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMRK 58 (189)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCEEEEHHHHHHHHHHHHCCCCCHHHHHC
T ss_conf 99997579887266999999877522000076999999998387202898852
No 208
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=92.85 E-value=0.11 Score=31.53 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=30.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHH
Q ss_conf 8879984888996799999999998247---8988956677687
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTK 72 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll~~g---~~P~~IL~lTFT~ 72 (242)
-+.|++++||+||||.| .-+++++..| ..|.++.++--.+
T Consensus 138 lntLiigpP~~GKTTlL-RdiaR~~s~g~~~~l~kkv~IiDers 180 (308)
T COG3854 138 LNTLIIGPPQVGKTTLL-RDIARLLSDGINQFLPKKVGIIDERS 180 (308)
T ss_pred EEEEEECCCCCCHHHHH-HHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf 24699659988707799-99999863151126773289971500
No 209
>PRK02496 adk adenylate kinase; Provisional
Probab=92.76 E-value=0.13 Score=31.04 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 887998488899679999999999824789889566
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~ 67 (242)
..+++.+||||||+|.-.....++=...++...+|-
T Consensus 2 ~riillG~PGSGKgTqa~~L~~~~~~~his~GdllR 37 (185)
T PRK02496 2 ARLIFLGPPGAGKGTQAVVLAEHLQIPHISTGDILR 37 (185)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCEEECHHHHHH
T ss_conf 189997999999899999999996997788889999
No 210
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.74 E-value=0.11 Score=31.51 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=17.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 8799848889967999999999982
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
++|..+|||||||++.-.-.-.+..
T Consensus 39 hlLf~GppG~GKTt~a~~la~~l~~ 63 (318)
T PRK00440 39 HLLFAGPPGTGKTTAALALARELYG 63 (318)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 6988895998899999999999769
No 211
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.69 E-value=0.17 Score=30.20 Aligned_cols=55 Identities=20% Similarity=0.151 Sum_probs=28.8
Q ss_pred HHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999982-7688879984888996799999999998247898895667768789999999999
Q 537021.9.peg.4 23 EQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 (242)
Q Consensus 23 qq~~a~-~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~ 83 (242)
=.+.+. +.-.+++.-+|||||||| |+..++.-... +...+.=+...++++|+-|.
T Consensus 43 Lrr~i~~~~~~S~Il~GPPGtGKTT-LA~iIA~~t~~-----~F~~lsAv~sgvkdlr~ii~ 98 (726)
T PRK13341 43 LRRAIKADRVGSLILYGPPGVGKTT-LARIIANHTRA-----HFSSLNAVLAGVKDLRAEVD 98 (726)
T ss_pred HHHHHHCCCCCEEEEECCCCCCHHH-HHHHHHHHHCC-----CEEEEECCCCCHHHHHHHHH
T ss_conf 9999976999827888979999999-99999887488-----67998562037799999999
No 212
>PRK09862 putative ATP-dependent protease; Provisional
Probab=92.68 E-value=0.11 Score=31.48 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=27.8
Q ss_pred CHHHHHH---HCC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 4899998---276-888799848889967999999999982478988956677
Q 537021.9.peg.4 21 KSEQLLA---SDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 (242)
Q Consensus 21 ~~qq~~a---~~~-~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lT 69 (242)
+++.+.| +.+ ..++|..++||||||- |+.|+-.++ -...+++.+=+|
T Consensus 196 q~~akraleIAAAGgHnlLl~GpPG~GKTM-lA~rlp~IL-PpLt~~e~lEv~ 246 (506)
T PRK09862 196 QEQGKRGLEITAAGGHNLLLIGPPGTGKTM-LASRINGLL-PDLSNEEALESA 246 (506)
T ss_pred CHHHHHHHHHHHCCCCCEEEECCCCCCHHH-HHHHHHHCC-CCCCHHHHHHHH
T ss_conf 799999999974468865987699945989-997751238-998989999999
No 213
>pfam03237 Terminase_6 Terminase-like family. This family represents a group of terminase proteins.
Probab=92.65 E-value=0.081 Score=32.53 Aligned_cols=53 Identities=26% Similarity=0.329 Sum_probs=37.2
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q ss_conf 99848889967999999999982478988956677687899999999-9999677
Q 537021.9.peg.4 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR-VLEIITA 88 (242)
Q Consensus 35 lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~R-I~~~l~~ 88 (242)
++.+|+|||||++++..+++.... .++..++++..|...+.+...+ +...+.+
T Consensus 1 ~~~ggr~~GKT~~~~~~~~~~a~~-~~~~~~~i~~~t~~~~~~~~~~~~~~~~~~ 54 (380)
T pfam03237 1 NILGSRQSGKTFAFAREALRHALG-NGPKNQIILSASKAQARLEFKKGIIEIAGD 54 (380)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHH-CCCCCEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 942645252839999999999985-899728999799999999999999996688
No 214
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=92.65 E-value=0.075 Score=32.76 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=16.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 87998488899679999999999
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRL 55 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~l 55 (242)
-++.-++||+|||+|+-...-.|
T Consensus 47 iLlLtGPaG~GKTTTI~lLAkeL 69 (490)
T pfam03215 47 ILLLTGPSGCGKSTTVKVLSKEL 69 (490)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89987989988999999999975
No 215
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=92.64 E-value=0.15 Score=30.68 Aligned_cols=51 Identities=27% Similarity=0.290 Sum_probs=32.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 879984888996799999999998247-------8988956677687899999999999
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLLAN-------AHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~~g-------~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
=++|.+--||||||-|-..+... ..| +.|.+|-+++-.+.=|.||.+.+..
T Consensus 91 Vvii~GeTGsGKTTQiPq~~le~-g~g~~~~I~~TQPRRiAA~svA~RVA~E~~~~lG~ 148 (1295)
T PRK11131 91 VVIVAGETGSGKTTQLPKICLEL-GRGIKGLIGHTQPRRLAARTVANRIAEELETELGG 148 (1295)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC-CCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 69997689998788999999962-79999989977965999999999999981999899
No 216
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.59 E-value=0.16 Score=30.55 Aligned_cols=39 Identities=26% Similarity=0.274 Sum_probs=27.0
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHHHH---------CCCCHHHHHH
Q ss_conf 276888799848889967999999999982---------4789889566
Q 537021.9.peg.4 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLC 67 (242)
Q Consensus 28 ~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~---------~g~~P~~IL~ 67 (242)
...++++++.+.||+|||.. +..++..+. .+..|+.++.
T Consensus 40 ~~~~~~vll~G~PG~gKT~l-a~~lA~~l~~~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 40 LLAGGHVLLEGPPGVGKTLL-ARALARALGLPFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred HHCCCCEEEECCCCCCHHHH-HHHHHHHHCCCCEEEECCCCCCHHHHCC
T ss_conf 98599778779898777999-9999998389818995689988888205
No 217
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=92.57 E-value=0.1 Score=31.90 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=24.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 8799848889967999999999982478
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLLANA 60 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~~g~ 60 (242)
+.||+.||=|||||.| .=+++.+.+|+
T Consensus 125 NTLiIsPPq~GKTTlL-RDlaR~~StG~ 151 (282)
T TIGR02858 125 NTLIISPPQCGKTTLL-RDLARILSTGI 151 (282)
T ss_pred EEEEECCCCCCCCCHH-HHHHHHHHCCC
T ss_conf 7888868898851048-88988860785
No 218
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=0.066 Score=33.15 Aligned_cols=95 Identities=20% Similarity=0.317 Sum_probs=47.8
Q ss_pred HHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH-HCCCCCCC
Q ss_conf 827688879984888996799999999998247898895667768789999999999--------996775-21674221
Q 537021.9.peg.4 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL--------EIITAW-SHLSDEIL 97 (242)
Q Consensus 27 a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~--------~~l~~~-~~~~~~~~ 97 (242)
-.+|.+.||..++||||||- |+.-|++-. -.||-+-+..|+..... ..+.-. .+.+..-+
T Consensus 181 GI~PPKGVLLYGPPGTGKTL-LAkAVA~~T----------~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIF 249 (406)
T COG1222 181 GIDPPKGVLLYGPPGTGKTL-LAKAVANQT----------DATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIF 249 (406)
T ss_pred CCCCCCCEEEECCCCCCHHH-HHHHHHHCC----------CCEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 99999712766899975889-999987205----------8669994219999998341169999999987414984999
Q ss_pred HHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46499731479997--899999999999983100132
Q 537021.9.peg.4 98 SAEITKIQGKKPNK--SDMSKARHLLITILETPGGLK 132 (242)
Q Consensus 98 ~~~l~~~~~~~~~~--~~~~~~~~ll~~~l~~~~~~~ 132 (242)
...+-.+.....+. .-..+-++.+-.+|.+.|++.
T Consensus 250 iDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 250 IDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred EECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 8311223111136888850999999999998605889
No 219
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.53 E-value=0.11 Score=31.51 Aligned_cols=73 Identities=18% Similarity=0.116 Sum_probs=43.7
Q ss_pred HHHHHHHHCCCHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88973235094899998276--88879984888996799999999998247898895667768789999999999996
Q 537021.9.peg.4 11 SETIDLISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 (242)
Q Consensus 11 ~~~~~~~~~~~~qq~~a~~~--~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l 86 (242)
-+++.++.. +.+.+...+ ..-++..+--|||||||......|+-..|-+|-=+-|=||-.+|-..++ .+.+..
T Consensus 80 eELv~llG~--~~~~l~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~-~La~q~ 154 (451)
T COG0541 80 EELVKLLGG--ENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLK-QLAEQV 154 (451)
T ss_pred HHHHHHHCC--CCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH-HHHHHC
T ss_conf 999998488--876650378998589998156797486899999999974994589850567868999999-999860
No 220
>PRK06761 hypothetical protein; Provisional
Probab=92.50 E-value=0.16 Score=30.49 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=19.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHH-HCC
Q ss_conf 88879984888996799999999998-247
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLL-LAN 59 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll-~~g 59 (242)
++-++|++-||||||||. +++...| ..|
T Consensus 2 ~kLIiIEGlPGsGKSTta-~~l~d~L~~~g 30 (281)
T PRK06761 2 TKLIIIEGLPGFGKSTTA-HLLNDKLSQLK 30 (281)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHHHCC
T ss_conf 617999668999801499-99999998669
No 221
>KOG0922 consensus
Probab=92.49 E-value=0.079 Score=32.60 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=44.7
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHHH-H-CC----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 27688879984888996799999999998-2-47----8988956677687899999999999967
Q 537021.9.peg.4 28 SDPTRSAWVSANAGSGKTHILVQRVLRLL-L-AN----AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 28 ~~~~~~~lV~A~aGSGKT~tL~~rv~~ll-~-~g----~~P~~IL~lTFT~kAA~El~~RI~~~l~ 87 (242)
+.-+.-++|.+--||||||-|.......- . .| +.|.+|.|+|--++-|.||..++.+..|
T Consensus 63 ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VG 128 (674)
T KOG0922 63 VEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVG 128 (674)
T ss_pred HHHCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 987877999848989853327699986265668827750671677888999999985897676222
No 222
>TIGR00606 rad50 rad50; InterPro: IPR004584 Rad50 is involved in recombination, recombinational repair, and/or non-homologous end joining. It is a component of an exonuclease complex with MRE11 homologs. The Saccharomyces cerevisiae Rad50/MRE11 complex possesses single-stranded endonuclease activity and ATP-dependent double-strand-specific exonuclease activity. Rad50 provides an ATP-dependent control of MRE11 by unwinding and repositioning DNA ends into the MRE11 active site. This family is distantly related to the SbcC family of bacterial proteins. When the N- and C-terminal globular regions of Rad50 from Pyrococcus furiosus P58301 from SWISSPROT are co-expressed in Escherichia coli, they spontaneously associate to form a stable complex that possesses ATP-binding and weak ATP-hydrolysing activities. The structure formed is known as the Rad50 catalytic domain (Rad50cd1). In the presence of ATP, two Rad50cd1 molecules interact via their ATP-binding and highly conserved 'signature' motifs to form a dimer. As ATP is buried deep within this dimer interface, the two Rad50cd1 molecules may have to completely disengage after ATP hydrolysis to allow the release of ADP before binding of a new ATP molecule. ATP binding is also accompanied by a 30° rotation of two distinct domains within each Rad50cd1 part of the dimer. This rotation and dimerisation creates a positively charged surface which, potentially, could provide a DNA-binding site capable of accommodating two DNA molecules. The Mre11-docking site within Rad50 has been mapped to two 40-residue heptad-repeat sequences that lie adjacent to the N- and C-terminal ATPase segments. A distinct region within this domain forms a conserved hydrophobic patch that is believed to be the actual Mre11-binding site and lies immediately adjacent to the putative DNA-binding site of Rad50. As Rad50 dimerises in the presence of ATP and forms a stoichiometric complex with Mre11 (one Mre11 subunit binding to one Rad50 subunit), it is possible that the MR complex forms a closely coordinated DNA-binding unit that has the potential to act on two DNA molecules simultaneously. Within this unit, ATP-dependent control of nuclease action might be achieved via Rad50 unwinding or repositioning DNA ends into the active-site of Mre11 . ; GO: 0005524 ATP binding, 0006281 DNA repair, 0030870 Mre11 complex.
Probab=92.47 E-value=0.074 Score=32.79 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=21.5
Q ss_pred CCCE-EEEECCCCCHHHHHHHHHHHHHHCC-CC
Q ss_conf 8887-9984888996799999999998247-89
Q 537021.9.peg.4 31 TRSA-WVSANAGSGKTHILVQRVLRLLLAN-AH 61 (242)
Q Consensus 31 ~~~~-lV~A~aGSGKT~tL~~rv~~ll~~g-~~ 61 (242)
-.|+ ++++|-||||||+|- .+..|..| .|
T Consensus 27 ~SP~T~l~GPNG~GKTT~IE--~L~y~~TG~~P 57 (1328)
T TIGR00606 27 LSPLTLLVGPNGAGKTTIIE--ALKYVTTGDFP 57 (1328)
T ss_pred ECCCCEEECCCCCCHHHHHH--HHHHHCCCCCC
T ss_conf 16601012778875258987--54332048898
No 223
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.42 E-value=0.29 Score=28.62 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=20.3
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 88879984888996799999999998247
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
..++++.+++|||||+.+-.-.......+
T Consensus 38 ~~~l~i~G~~GsGKTHLl~a~~~~~~~~~ 66 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERG 66 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 88699989999988999999999986269
No 224
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=92.42 E-value=0.22 Score=29.53 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=27.4
Q ss_pred EEEECCCCCHHHHHHHHHHHHHH----------CC-CCHHHHHHHHHHH
Q ss_conf 99848889967999999999982----------47-8988956677687
Q 537021.9.peg.4 35 WVSANAGSGKTHILVQRVLRLLL----------AN-AHPSTLLCLTHTK 72 (242)
Q Consensus 35 lV~A~aGSGKT~tL~~rv~~ll~----------~g-~~P~~IL~lTFT~ 72 (242)
=|-++||||||+.=..--+.-.. +| .+|++|..+.=.+
T Consensus 16 QiYGp~G~GKTn~c~~~a~~a~~~Gk~v~YiDTEGGLS~ER~~q~~~~~ 64 (223)
T TIGR02237 16 QIYGPPGSGKTNICLILAVNAARQGKKVVYIDTEGGLSPERFKQIAEDR 64 (223)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9875899867899999999998618958999628983289999986305
No 225
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.30 E-value=0.97 Score=24.96 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=31.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH---HHHHHHHHHHHH
Q ss_conf 88799848889967999999999982478988956677---687899999999
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT---HTKAAAAEMSHR 81 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lT---FT~kAA~El~~R 81 (242)
-|+.+-+++|.|||+.|-. +.+-+.+. --+|+.+| ||+.-..-++..
T Consensus 142 NPLfIyG~~GlGKTHLL~A-Ign~i~~~--~~kV~Yvtae~F~~~~v~ai~~~ 191 (455)
T PRK12422 142 NPIYLFGPEGSGKTHLMQA-AVSALRES--GGKILYVSSELFTEHLVSAIRSG 191 (455)
T ss_pred CCEEEECCCCCCHHHHHHH-HHHHHHCC--CCEEEEECHHHHHHHHHHHHHCC
T ss_conf 8758878999978999999-99985379--98699974999999999999758
No 226
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.28 E-value=0.16 Score=30.37 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=21.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHH-HCCCCHHHHHH
Q ss_conf 879984888996799999999998-24789889566
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll-~~g~~P~~IL~ 67 (242)
.+++.++|||||+|.- .+++.-. ...++...+|-
T Consensus 2 ~iillG~PGsGKgTqa-~~la~~~~~~~is~GdllR 36 (215)
T PRK00279 2 RLILLGPPGAGKGTQA-KFIAEKYGIPHISTGDMLR 36 (215)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHCCEEECHHHHHH
T ss_conf 7999899999879999-9999986991786889999
No 227
>PRK13974 thymidylate kinase; Provisional
Probab=92.28 E-value=0.12 Score=31.42 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=34.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79984888996799999999998247898895667768789999999999996
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l 86 (242)
+.+++.=||||||.+-....+|-.+|..+...-+++...-....+-+.|++.+
T Consensus 6 Iv~EGiDGsGKsTq~~~L~~~L~~~g~~~~~~~~~~~rePg~t~~g~~ir~~l 58 (212)
T PRK13974 6 IVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELL 58 (212)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 99889999989999999999998658753586157714999980699999998
No 228
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.26 E-value=0.2 Score=29.79 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 8887998488899679999999999824
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLA 58 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~ 58 (242)
+...||+|+|.||||+.|-. +++-|..
T Consensus 169 GQRgLIVAPPkaGKT~lLq~-IA~aI~~ 195 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQN-IANSITT 195 (416)
T ss_pred CCCCEEECCCCCCHHHHHHH-HHHHHHH
T ss_conf 85003756998754799999-9999985
No 229
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family; InterPro: IPR006266 This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=92.23 E-value=0.065 Score=33.21 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=16.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHH
Q ss_conf 7998488899679999999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRL 55 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~l 55 (242)
+.|++||||||=|-=+..+-++
T Consensus 2 ~FvLGGPGSGKGTQCa~Iv~~f 23 (189)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (189)
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 7763698987567899999853
No 230
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.21 E-value=0.12 Score=31.26 Aligned_cols=34 Identities=18% Similarity=0.080 Sum_probs=28.1
Q ss_pred HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9999827688879984888996799999999998
Q 537021.9.peg.4 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 23 qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
-+..|..+.|-|+|+++-||||+|+++.-+.|.=
T Consensus 119 lk~la~~kRGLviiVGaTGSGKSTtmAaMi~yRN 152 (375)
T COG5008 119 LKDLALAKRGLVIIVGATGSGKSTTMAAMIGYRN 152 (375)
T ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCC
T ss_conf 9975204374599987788884016899860134
No 231
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=92.20 E-value=0.14 Score=30.80 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=18.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 8799848889967999999999982
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
++|+.++||+|||+.+ ..+++.+.
T Consensus 1 hVLL~GppG~GKT~l~-~~lA~~~~ 24 (131)
T pfam07726 1 HVLLEGVPGLAKTLLA-RTLARSLG 24 (131)
T ss_pred CEEEECCCCCHHHHHH-HHHHHHHC
T ss_conf 9878989987699999-99999959
No 232
>KOG0923 consensus
Probab=92.10 E-value=0.12 Score=31.29 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=40.6
Q ss_pred HHCCCCCEEEEECCCCCHHHHHHHHHHHH-H-HCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 82768887998488899679999999999-8-247-----8988956677687899999999999967
Q 537021.9.peg.4 27 ASDPTRSAWVSANAGSGKTHILVQRVLRL-L-LAN-----AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 27 a~~~~~~~lV~A~aGSGKT~tL~~rv~~l-l-~~g-----~~P~~IL~lTFT~kAA~El~~RI~~~l~ 87 (242)
|+....-++|.+-+||||||-|-...... . ..| ..|.+|.+++-.-+-|.||-.++..-+|
T Consensus 276 av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVG 343 (902)
T KOG0923 276 AVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVG 343 (902)
T ss_pred HHHHCCEEEEECCCCCCCCCCCCHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99867089997578898644562898854213589467406850688777999999985740143144
No 233
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=92.09 E-value=0.049 Score=34.06 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=42.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799848889967999999999982478988956677687899999999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
+.-++==|||||||.+...+|.=.+|-+|.=|.|=||===|=+-|+.=-.+
T Consensus 124 iMfVGLQGaGKTTtctKLA~YYk~rGfK~~lvCADTFRAGAFdQLkqNA~k 174 (453)
T TIGR01425 124 IMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATK 174 (453)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 888621488715668787777632664325651775423248999874764
No 234
>KOG1131 consensus
Probab=92.04 E-value=0.19 Score=29.97 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=42.3
Q ss_pred HHHHHCCCCCEEEEECCCCCHHHHHHHHHH-HHHHCCCCHHHHHHHHHH----HHHHHHHHHH
Q ss_conf 999827688879984888996799999999-998247898895667768----7899999999
Q 537021.9.peg.4 24 QLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHT----KAAAAEMSHR 81 (242)
Q Consensus 24 q~~a~~~~~~~lV~A~aGSGKT~tL~~rv~-~ll~~g~~P~~IL~lTFT----~kAA~El~~R 81 (242)
-+...|+.|+-|.+-|-|||||-+|...+. |.+.....+.+++.++=| .||..||+.=
T Consensus 28 lKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131 28 LKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 987634578379977888873128999999999867763335899637526899999999999
No 235
>KOG0738 consensus
Probab=92.01 E-value=0.12 Score=31.37 Aligned_cols=91 Identities=16% Similarity=0.303 Sum_probs=41.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHC--CCCCCCHHH
Q ss_conf 6888799848889967999999999982478988956677687899999999-------9999677521--674221464
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR-------VLEIITAWSH--LSDEILSAE 100 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~R-------I~~~l~~~~~--~~~~~~~~~ 100 (242)
|=+.||..++||||||- |+.-|+- .-| .||=|-.+.-|... |...|-+.++ .+..-+...
T Consensus 244 PWkgvLm~GPPGTGKTl-LAKAvAT--Ec~--------tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDE 312 (491)
T KOG0738 244 PWKGVLMVGPPGTGKTL-LAKAVAT--ECG--------TTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDE 312 (491)
T ss_pred CCCEEEEECCCCCCHHH-HHHHHHH--HHC--------CEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEHHH
T ss_conf 53000556799974789-9999988--616--------727874024565553252699999999999874885353356
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9973147999789999999999998310013
Q 537021.9.peg.4 101 ITKIQGKKPNKSDMSKARHLLITILETPGGL 131 (242)
Q Consensus 101 l~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~ 131 (242)
+..++........-.-.++.=..+|.+.|++
T Consensus 313 IDslcs~RG~s~EHEaSRRvKsELLvQmDG~ 343 (491)
T KOG0738 313 IDSLCSQRGGSSEHEASRRVKSELLVQMDGV 343 (491)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 7788725798650367888888999986334
No 236
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=91.96 E-value=0.17 Score=30.31 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=23.1
Q ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 98276888799848889967999999999982
Q 537021.9.peg.4 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 26 ~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
.|+.-.+++++++.||||| ..|+.-+..+|-
T Consensus 45 ~Aa~qrrhvlliG~PGtGK-Smlakam~elLp 75 (637)
T PRK13765 45 KAAKQRRHVMLIGSPGTGK-SMLAKAMAELLP 75 (637)
T ss_pred HHHHHHCCEEEECCCCCCH-HHHHHHHHHHCC
T ss_conf 9998437389868999879-999999997579
No 237
>PRK08118 topology modulation protein; Reviewed
Probab=91.96 E-value=0.089 Score=32.24 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=27.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 88799848889967999999999982-47898895667-7687899999999999967
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCL-THTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~l-TFT~kAA~El~~RI~~~l~ 87 (242)
.-++|++++|||||| |+.++...+. .-+.-++|-=. .-++...+|+.+++...+.
T Consensus 2 ~rI~IiG~~GsGKST-lAr~L~~~~~ip~~~LD~l~w~~~w~~~~~~e~~~~~~~~~~ 58 (167)
T PRK08118 2 KKIILIGSGGSGKST-LARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQRTVQNELVK 58 (167)
T ss_pred CEEEEECCCCCCHHH-HHHHHHHHHCCCEEECCCEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 679998899987999-999999988969796443476689946888999999999983
No 238
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=91.95 E-value=0.6 Score=26.43 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=19.1
Q ss_pred CCCCE-EEEECCCCCHHHHHHHHHHHH
Q ss_conf 68887-998488899679999999999
Q 537021.9.peg.4 30 PTRSA-WVSANAGSGKTHILVQRVLRL 55 (242)
Q Consensus 30 ~~~~~-lV~A~aGSGKT~tL~~rv~~l 55 (242)
|.|.+ .|.+.||||||+....-.+..
T Consensus 17 ~~G~itEi~G~~GsGKTql~lqla~~~ 43 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 478799999999984999999999998
No 239
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=91.89 E-value=0.2 Score=29.82 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=26.6
Q ss_pred CCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 6888-799848889967999999999982478988956677
Q 537021.9.peg.4 30 PTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 (242)
Q Consensus 30 ~~~~-~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lT 69 (242)
|.|. .++.++||||||+...+-.+.....| .+++.++
T Consensus 21 ~~G~itei~G~pG~GKTtl~lq~a~~~~~~g---~~vlYid 58 (224)
T PRK09361 21 ERGTITQIYGPPGSGKTNICIQLAVEAARQG---KKVIYID 58 (224)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEC
T ss_conf 8887999989999859999999999999749---9099967
No 240
>KOG0951 consensus
Probab=91.85 E-value=0.31 Score=28.39 Aligned_cols=70 Identities=21% Similarity=0.237 Sum_probs=54.2
Q ss_pred CCHHHHHHHC----CCCCEEEEECCCCCHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9489999827----688879984888996799999999998247--------8988956677687899999999999967
Q 537021.9.peg.4 20 TKSEQLLASD----PTRSAWVSANAGSGKTHILVQRVLRLLLAN--------AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 20 ~~~qq~~a~~----~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g--------~~P~~IL~lTFT~kAA~El~~RI~~~l~ 87 (242)
+|.-|-.+.+ ...++++-||+|+|||-+-+.-++.-+..+ ..|-+|..+...++=++||..-+.+++.
T Consensus 310 LNrIQS~V~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLVqE~VgsfSkRla 389 (1674)
T KOG0951 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA 389 (1674)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCEEEEEEEHHHHHHHHHHHHHHHCC
T ss_conf 66788777788755767378742678882379999999998535454454102561379984289999999988886423
Q ss_pred HH
Q ss_conf 75
Q 537021.9.peg.4 88 AW 89 (242)
Q Consensus 88 ~~ 89 (242)
.+
T Consensus 390 ~~ 391 (1674)
T KOG0951 390 PL 391 (1674)
T ss_pred CC
T ss_conf 56
No 241
>KOG1533 consensus
Probab=91.85 E-value=0.062 Score=33.33 Aligned_cols=22 Identities=27% Similarity=0.147 Sum_probs=16.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHH
Q ss_conf 7998488899679999999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRL 55 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~l 55 (242)
.+|+++|||||||--......+
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fl 26 (290)
T KOG1533 5 QVVIGPPGSGKSTYCNGMSQFL 26 (290)
T ss_pred EEEECCCCCCCCCHHHHHHHHH
T ss_conf 6887699998531132099999
No 242
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=91.84 E-value=0.12 Score=31.41 Aligned_cols=49 Identities=22% Similarity=0.188 Sum_probs=28.0
Q ss_pred CCC---EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 888---79984888996799999999998247898895667768789999999
Q 537021.9.peg.4 31 TRS---AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 (242)
Q Consensus 31 ~~~---~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~ 80 (242)
++| +-|-++||||||+.|..-+-.|-.+ .++-=|..=-+|+.=|..++.
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~ 61 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRK 61 (202)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHH-CCEEEEECEEECHHHHHHHHH
T ss_conf 5864899961799867899999999999752-776899640400655999973
No 243
>KOG0741 consensus
Probab=91.83 E-value=0.4 Score=27.67 Aligned_cols=51 Identities=18% Similarity=0.321 Sum_probs=30.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8879984888996799999999998247----89889566776878999999999999677
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLLLAN----AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll~~g----~~P~~IL~lTFT~kAA~El~~RI~~~l~~ 88 (242)
+.+|..+|||||||- ++..+..+|-.. |.--+|| +|=+.|=.+-|++.+.+
T Consensus 257 KGiLLyGPPGTGKTL-iARqIGkMLNArePKIVNGPeIL-----~KYVGeSE~NvR~LFaD 311 (744)
T KOG0741 257 KGILLYGPPGTGKTL-IARQIGKMLNAREPKIVNGPEIL-----NKYVGESEENVRKLFAD 311 (744)
T ss_pred EEEEEECCCCCCHHH-HHHHHHHHHCCCCCCCCCCHHHH-----HHHHCCCHHHHHHHHHH
T ss_conf 357887799987018-99998787457998634757889-----87606307889999875
No 244
>KOG0925 consensus
Probab=91.81 E-value=1.1 Score=24.57 Aligned_cols=58 Identities=22% Similarity=0.258 Sum_probs=45.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHH-H--CC---CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 688879984888996799999999998-2--47---8988956677687899999999999967
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLL-L--AN---AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll-~--~g---~~P~~IL~lTFT~kAA~El~~RI~~~l~ 87 (242)
-+.-+++++-+|||||+.+-..++... . .| ..|.++.+++-..+-|.||-=-|..-.|
T Consensus 61 ~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVG 124 (699)
T KOG0925 61 NNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVG 124 (699)
T ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHCCCCCHHCC
T ss_conf 4826999934888864547499999987633661324715788999999888874431020115
No 245
>KOG0354 consensus
Probab=91.68 E-value=0.095 Score=32.04 Aligned_cols=65 Identities=14% Similarity=0.119 Sum_probs=43.4
Q ss_pred CHHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4899998276-88879984888996799999999998247898895667768789999999999996
Q 537021.9.peg.4 21 KSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 (242)
Q Consensus 21 ~~qq~~a~~~-~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l 86 (242)
+-|..++.-+ ..+.+|.+|-|+|||+.-+.-..+.+. ..+=.+|+.++.|+-=...-..++...+
T Consensus 65 ~YQ~eivq~ALgkNtii~lPTG~GKTfIAa~Vm~nh~r-w~p~~KiVF~aP~~pLv~QQ~a~~~~~~ 130 (746)
T KOG0354 65 NYQEELVQPALGKNTIIALPTGSGKTFIAAVIMKNHFE-WRPKGKVVFLAPTRPLVNQQIACFSIYL 130 (746)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHH-CCCCCEEEEEECCCHHHHHHHHHHHHCC
T ss_conf 78999867862687699953599861047999999972-3776438996077117888898876206
No 246
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=91.67 E-value=0.3 Score=28.50 Aligned_cols=57 Identities=23% Similarity=0.238 Sum_probs=46.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 879984888996799999999998247-898895667768789999999999996775
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~~g-~~P~~IL~lTFT~kAA~El~~RI~~~l~~~ 89 (242)
-++..||-|.|||..-+.-..+.+.++ -..+++..+.+++.+.+.|..|+...++..
T Consensus 216 ~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 216 LVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf 1899916888719999999999753113545628996558999999999998751235
No 247
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.64 E-value=1.1 Score=24.45 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=34.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7998488899679999999999-82478988956677687899999999999967
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~l-l~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~ 87 (242)
++|-|.||.|||....+-..+. +.+|. .++.+|. ...+.++..|+.....
T Consensus 197 iIiaARPsmGKTafalnia~n~A~~~g~---~Vl~fSL-EMs~eql~~R~la~~s 247 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGK---PVLFFSL-EMSAEQLGERLLASKS 247 (421)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCC---EEEEEEC-CCCHHHHHHHHHHHHC
T ss_conf 9998546787459999999999986698---3899925-7999999999999854
No 248
>PRK07261 topology modulation protein; Provisional
Probab=91.61 E-value=0.1 Score=31.84 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=28.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHC-CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7998488899679999999999824-789889566-776878999999999999677
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC-LTHTKAAAAEMSHRVLEIITA 88 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~-g~~P~~IL~-lTFT~kAA~El~~RI~~~l~~ 88 (242)
++|++++|||||| |+.++...+.- -+.-+.+-- =-.+...-+|..+++...+..
T Consensus 3 I~IiG~sGsGKST-lAr~L~~~~~ip~~~LD~l~w~p~w~~~~~~e~~~~~~~~~~~ 58 (171)
T PRK07261 3 IAIIGYSGSGKST-LARFLGQHYNCPVLHLDQLHFSSNWQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEECCCCCCHHH-HHHHHHHHHCCCEEEECCEEECCCCEECCHHHHHHHHHHHHHC
T ss_conf 9998899986899-9999999879797970227888999888899999999999848
No 249
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.55 E-value=0.29 Score=28.68 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=23.4
Q ss_pred CEE-EEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 879-98488899679999999999824789
Q 537021.9.peg.4 33 SAW-VSANAGSGKTHILVQRVLRLLLANAH 61 (242)
Q Consensus 33 ~~l-V~A~aGSGKT~tL~~rv~~ll~~g~~ 61 (242)
|++ |.+--||||||.+...+..|-.+|.+
T Consensus 3 Pii~ivG~s~SGKTTLi~kli~~l~~~G~r 32 (170)
T PRK10751 3 PLLAIAAWSGTGKTTLLKKLIPALCARGIR 32 (170)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 779999469999999999999999987984
No 250
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=91.55 E-value=0.19 Score=29.92 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=29.6
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76888799848889967999999999982478988956677687899999999
Q 537021.9.peg.4 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 (242)
Q Consensus 29 ~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~R 81 (242)
..+++++|+||.|||||..-.-= .+..+ .-.+|++-|-|+.=-+.+-++
T Consensus 262 ~~~~~l~IEAgTGtGKTlaYLlP---aia~~-~~~~vVIST~T~~LQeQL~~k 310 (820)
T PRK07246 262 HDGVASFIEAQTGIGKTYGYLLP---LLAQS-DQNQIIVSVPTKLLQDQIMAG 310 (820)
T ss_pred CCCCCEEEECCCCCCHHHHHHHH---HHHHC-CCCEEEEEECCHHHHHHHHHH
T ss_conf 05883899889996479999999---99843-798399990869999999997
No 251
>TIGR02746 TraC-F-type type-IV secretion system protein TraC; InterPro: IPR014117 The proteins in this entry are found in the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The proteins contain the Walker A and B motifs and so are putative nucleotide triphosphatases..
Probab=91.55 E-value=0.22 Score=29.54 Aligned_cols=142 Identities=15% Similarity=0.143 Sum_probs=67.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH--HH
Q ss_conf 688879984888996799999999998247898895667----768789999999999996775216742214649--97
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL----THTKAAAAEMSHRVLEIITAWSHLSDEILSAEI--TK 103 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~l----TFT~kAA~El~~RI~~~l~~~~~~~~~~~~~~l--~~ 103 (242)
.+=++.|.|++|+||++.+-.-+...+..| ..|-+| +|-+ +-+.++. .+-..- ..
T Consensus 488 ~NYN~~~~g~sG~GKSf~~Q~~~~~~L~~G---~kv~viDvG~Sy~K---------LC~~lgG-------~Yie~~~e~~ 548 (900)
T TIGR02746 488 TNYNIAVVGGSGAGKSFFMQELIVSVLSRG---GKVWVIDVGRSYKK---------LCEMLGG-------TYIEFSPEST 548 (900)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCC---CEEEEEEECCCHHH---------HHHHHCC-------CEECCCCCCC
T ss_conf 771489972889871687989999985179---84899960788488---------8765187-------1210466776
Q ss_pred HHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCCCCCCCCCCCCHHHH------HHHHHH
Q ss_conf 3147999-789999999999998310013211179----99987555428975889998516837899------999999
Q 537021.9.peg.4 104 IQGKKPN-KSDMSKARHLLITILETPGGLKVQTIH----AFCEAIMQQFPLEANITSHFAIADEEQSK------KLIEEA 172 (242)
Q Consensus 104 ~~~~~~~-~~~~~~~~~ll~~~l~~~~~~~i~Ti~----~f~~~ilr~~~~~~gl~~~f~i~d~~~~~------~l~~~~ 172 (242)
+...+++ .. ...++. -....+.-.|..|+ --...|....+..+|++-+..=.-+.++. ..+.++
T Consensus 549 i~LNPFTHL~-i~~A~~----~~~~~~~~~v~~i~Geqv~~~~~i~~~ia~MAGlDl~P~~~l~~~q~lmaryCs~l~~A 623 (900)
T TIGR02746 549 ICLNPFTHLD-IEEARF----DIIDFDGNNVTEIDGEQVDEIDQITALIALMAGLDLSPEGGLSDEQELMARYCSLLEEA 623 (900)
T ss_pred CCCCCCCCCC-CCCCCC----CEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 3238744466-000333----22673634677567402889999999999884466684556788889999999999999
Q ss_pred HHHHHHHHHCCC-HHHHHHHHHHH
Q ss_conf 999999843278-03599999999
Q 537021.9.peg.4 173 KKSTLASIMLDN-NEELKKAFYEI 195 (242)
Q Consensus 173 ~~~~~~~~~~~~-~~~~~~~l~~~ 195 (242)
+...|....-.. -......|...
T Consensus 624 I~~~W~~~g~~a~~tdV~~~L~~~ 647 (900)
T TIGR02746 624 ILAAWKEKGNEATITDVADALEQL 647 (900)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf 999999712248848999999852
No 252
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=91.55 E-value=0.16 Score=30.51 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=26.6
Q ss_pred CCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 6888-799848889967999999999982478988956677
Q 537021.9.peg.4 30 PTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 (242)
Q Consensus 30 ~~~~-~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lT 69 (242)
+.|. .++-+.||+|||+.+.+-.......| ..++.++
T Consensus 17 ~~G~it~i~G~pG~GKStl~lq~a~~~~~~g---~~v~Yid 54 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQG---KKVAYID 54 (218)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC---CEEEEEE
T ss_conf 7887999989999849999999999986369---8699996
No 253
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=91.53 E-value=0.11 Score=31.71 Aligned_cols=22 Identities=14% Similarity=0.379 Sum_probs=16.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 87998488899679999999999
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRL 55 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~l 55 (242)
.++|+++|||||||.- .+++..
T Consensus 2 riiilG~pGaGK~T~A-~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLA-KKLAKK 23 (178)
T ss_pred EEEEECCCCCCHHHHH-HHHHHH
T ss_conf 7999899999889999-999997
No 254
>pfam02534 TraG TraG/TraD family. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems.
Probab=91.50 E-value=0.069 Score=33.04 Aligned_cols=28 Identities=36% Similarity=0.414 Sum_probs=20.3
Q ss_pred HCCC-CCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 2768-88799848889967999999999982
Q 537021.9.peg.4 28 SDPT-RSAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 28 ~~~~-~~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
-+++ .+++|+||+|||||...| +=.|+.
T Consensus 40 ~~~~~~H~lviaptgsGKt~~~V--iPnLl~ 68 (468)
T pfam02534 40 TDGDFSHVLVFAGTGSGKGVGVV--IPNLLV 68 (468)
T ss_pred ECCCCCEEEEECCCCCCCCCCCH--HHHHHH
T ss_conf 17997679998489997234242--988851
No 255
>CHL00195 ycf46 Ycf46; Provisional
Probab=91.49 E-value=0.12 Score=31.25 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=31.7
Q ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 982768887998488899679999999999824---78988956677687899999999999967
Q 537021.9.peg.4 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 26 ~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~---g~~P~~IL~lTFT~kAA~El~~RI~~~l~ 87 (242)
-...|.+.+|..++||||||..- .-++.-..- .+++.++ ..+=..|=..++++.+.
T Consensus 254 ~gl~~PkGvLL~GpPG~GKtl~A-KAvA~e~~~p~l~l~~~~l-----~~~~vGesE~~~r~~f~ 312 (491)
T CHL00195 254 YGLPTPRGLLLVGIQGTGKSLTA-KAIANEWNLPLLRLDVGKL-----FGGIVGESESRMRQMIQ 312 (491)
T ss_pred CCCCCCCEEEEECCCCCCHHHHH-HHHHHHHCCCEEEEEHHHH-----HHHHCCHHHHHHHHHHH
T ss_conf 59999987999799998789999-9998663894699667997-----56006704999999999
No 256
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.43 E-value=0.24 Score=29.26 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=17.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 888799848889967999999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLR 54 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ 54 (242)
+...+|.||||+|||+.|.. +++
T Consensus 16 GQR~gI~g~~gvGKT~Ll~~-i~~ 38 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQS-IAN 38 (249)
T ss_pred CCEEEEECCCCCCHHHHHHH-HHH
T ss_conf 86778878999889999999-999
No 257
>PRK04040 adenylate kinase; Provisional
Probab=91.42 E-value=0.2 Score=29.71 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=18.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 88799848889967999999999982
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
.-++|.+.||+||||++.. +...+.
T Consensus 3 k~VvvtGiPGvGKTTv~~~-~~~~l~ 27 (189)
T PRK04040 3 KVVVVTGVPGVGKTTVLNK-ALEKLK 27 (189)
T ss_pred EEEEEECCCCCCHHHHHHH-HHHHHC
T ss_conf 1899975898878999999-999723
No 258
>PRK08903 hypothetical protein; Validated
Probab=91.41 E-value=0.46 Score=27.22 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=19.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 88799848889967999999999982478
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLLLANA 60 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll~~g~ 60 (242)
..+.|.+++|||||+.|-.-.-.....+.
T Consensus 43 ~~l~i~G~~G~GKTHLl~a~~~~~~~~~~ 71 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVAAASEGGK 71 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 66999899999888999999999980699
No 259
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=91.40 E-value=0.14 Score=30.91 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=19.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 888799848889967999999999982
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
..+++|.++||||||.++ ..+...+.
T Consensus 42 p~n~~iyG~~GTGKT~~~-~~v~~~l~ 67 (366)
T COG1474 42 PSNIIIYGPTGTGKTATV-KFVMEELE 67 (366)
T ss_pred CCCEEEECCCCCCHHHHH-HHHHHHHH
T ss_conf 860799889998732899-99999997
No 260
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=91.35 E-value=0.13 Score=31.05 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=20.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHH-HHHHCC
Q ss_conf 688879984888996799999999-998247
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVL-RLLLAN 59 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~-~ll~~g 59 (242)
|+.=|+.-+|=||||||.|+-.=. |-+.+|
T Consensus 30 ~GEiViltGPSGSGKTTLLtLiG~LR~~Q~G 60 (220)
T TIGR02982 30 PGEIVILTGPSGSGKTTLLTLIGGLRSVQEG 60 (220)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 7647984378898468899988762565556
No 261
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=91.32 E-value=0.31 Score=28.41 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=26.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 6888799848889967999999999982478
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANA 60 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~ 60 (242)
.+-+..|.|+.||||++.+-+.+...+..|.
T Consensus 473 tN~N~~I~g~SGsGKSf~~q~l~~~~~~~G~ 503 (864)
T PRK13721 473 TNYNMAVCGTSGAGKTGLIQPLIRSVLDSGG 503 (864)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 8700699828998689999999999985799
No 262
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.28 E-value=0.21 Score=29.59 Aligned_cols=22 Identities=45% Similarity=0.445 Sum_probs=18.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHH
Q ss_conf 8879984888996799999999
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVL 53 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~ 53 (242)
+-+++.||||+||||.++.-..
T Consensus 38 RL~li~APAGfGKttl~aq~~~ 59 (894)
T COG2909 38 RLILISAPAGFGKTTLLAQWRE 59 (894)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 3899867887758899999998
No 263
>pfam04466 Terminase_3 Phage terminase large subunit. Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possess an endonuclease and ATPase activity that require Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences.
Probab=91.27 E-value=0.12 Score=31.45 Aligned_cols=44 Identities=27% Similarity=0.394 Sum_probs=33.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8879984888996799999999998247898895667768789999
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~E 77 (242)
+-.++.+|-|||||+.++..++..+.+ .|.++|++.-|.....+
T Consensus 3 r~~v~~GGrgsgKS~~~a~~~i~~~~~--~~~~~l~~r~~~~slr~ 46 (387)
T pfam04466 3 RYKVAKGGRGSGKSYHIALKLVLKLLM--HPRTNLVIREVKNTIED 46 (387)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHH
T ss_conf 689999088867999999999999987--89869999755688999
No 264
>PRK13764 ATPase; Provisional
Probab=91.14 E-value=0.46 Score=27.26 Aligned_cols=33 Identities=9% Similarity=0.089 Sum_probs=23.8
Q ss_pred HHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 827688879984888996799999999998247
Q 537021.9.peg.4 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 27 a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
...-.+.+||.++||+||||--.....++...|
T Consensus 255 l~~~a~GilIaG~PGaGKsTfaqalA~~~~~~g 287 (605)
T PRK13764 255 LEERAEGILIAGAPGAGKSTFAQALAEFYADMG 287 (605)
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 873366499977999977899999999998479
No 265
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=91.10 E-value=0.23 Score=29.36 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=17.7
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 8879984888996799999999998
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
.++|..+|||+|||++.-. +++-+
T Consensus 37 phlLf~GPpG~GKTt~A~~-lA~~l 60 (337)
T PRK12402 37 PHLVVYGPSGSGKTAAVRA-LAREL 60 (337)
T ss_pred CEEEEECCCCCCHHHHHHH-HHHHH
T ss_conf 7698889298489999999-99996
No 266
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=91.10 E-value=0.32 Score=28.33 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=35.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 888799848889967999999999982-47898895667768789999999999996
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~RI~~~l 86 (242)
+.-++|-|.||+|||+.+.+-+.+++. .|. .++.+++ .....++..|+....
T Consensus 30 GeL~viaarpg~GKT~f~~~~a~~~~~~~g~---~vl~~Sl-Em~~~~~~~Rlls~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGV---RVGTISL-EEPVVRTARRLLGQY 82 (271)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCC---EEEEEEC-CCCHHHHHHHHHHHH
T ss_conf 8089999689986999999999999997699---0899970-499999999999998
No 267
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=91.10 E-value=0.14 Score=30.84 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=15.4
Q ss_pred EEEEECCCCCHHHHHHHH
Q ss_conf 799848889967999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQR 51 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~r 51 (242)
-+|+++||||||+.|.+=
T Consensus 114 YlviG~~gsGKTt~l~~S 131 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS 131 (1169)
T ss_pred EEEECCCCCCHHHHHHHC
T ss_conf 899789998668999837
No 268
>PRK13946 shikimate kinase; Provisional
Probab=91.09 E-value=0.25 Score=29.08 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=26.0
Q ss_pred CCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9489999827688879984888996799999999998
Q 537021.9.peg.4 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 20 ~~~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
.++++..+..-..+++.++-+|||||++= ..++..+
T Consensus 9 ~~~~~~~~~l~kknIvLIG~mGsGKStvG-k~LA~~L 44 (195)
T PRK13946 9 SQEEQIRAALGKRTVVLVGLMGAGKSTVG-RRLATML 44 (195)
T ss_pred CHHHHHHHHHCCCCEEEECCCCCCHHHHH-HHHHHHH
T ss_conf 55999999858995899899999889999-9999997
No 269
>PRK08939 primosomal protein DnaI; Reviewed
Probab=91.05 E-value=0.28 Score=28.76 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 887998488899679999999999824789
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH 61 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~ 61 (242)
+.+.+.+++|+|||+.+....-.|..+|++
T Consensus 158 kGlyl~G~~G~GKTyL~~aian~La~~g~~ 187 (306)
T PRK08939 158 KGLYLYGDFGVGKTYLLAAIANELAKKGVS 187 (306)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 778898999998999999999999986992
No 270
>PHA02244 ATPase-like protein
Probab=91.04 E-value=0.38 Score=27.79 Aligned_cols=44 Identities=23% Similarity=0.344 Sum_probs=29.7
Q ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 98276888799848889967999999999982478988956677687899999
Q 537021.9.peg.4 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 (242)
Q Consensus 26 ~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El 78 (242)
.++..+-||+..+|||||||+.. .-|+..|.-. .-||++-+.|.
T Consensus 114 ~~v~~nipV~L~G~AGsGKt~~A-~qIA~aLdl~--------FYf~gAI~~ef 157 (383)
T PHA02244 114 KIVNANIPVFLKGGAGSGKNHIA-EQIAEALDLD--------FYFMNAIMDEF 157 (383)
T ss_pred HHHHCCCCEEEECCCCCCHHHHH-HHHHHHHCCC--------CEECHHHHHHH
T ss_conf 98735985699758888634899-9999985888--------24413230134
No 271
>PRK06893 DNA replication initiation factor; Validated
Probab=91.03 E-value=0.38 Score=27.81 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=20.5
Q ss_pred CCCC-EEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 6888-79984888996799999999998247
Q 537021.9.peg.4 30 PTRS-AWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 30 ~~~~-~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
...+ +.+-+++|||||+.|-.-.-.....+
T Consensus 37 ~~~~~l~i~G~~gsGKTHLLqa~~~~~~~~~ 67 (229)
T PRK06893 37 LKQPFFYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 4698799989999988999999999999718
No 272
>KOG3079 consensus
Probab=90.95 E-value=0.37 Score=27.92 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=14.9
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 79984888996799999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVL 53 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~ 53 (242)
++|++||||||-|.=...+.
T Consensus 11 ifVlGGPGsgKgTqC~kiv~ 30 (195)
T KOG3079 11 IFVLGGPGSGKGTQCEKIVE 30 (195)
T ss_pred EEEECCCCCCCCHHHHHHHH
T ss_conf 99976898882269999999
No 273
>KOG1806 consensus
Probab=90.89 E-value=0.16 Score=30.48 Aligned_cols=68 Identities=21% Similarity=0.293 Sum_probs=51.0
Q ss_pred HHCCCHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35094899998276--8887998488899679999999999824789889566776878999999999999
Q 537021.9.peg.4 17 ISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 17 ~~~~~~qq~~a~~~--~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~ 85 (242)
+-.+..|-.++..- .|-..|.+|||||||-+-+..+ .-+.+..+-.+-+++|-+|.|-+-+-+.|.+.
T Consensus 737 v~ft~~qveai~sg~qpgltmvvgppgtgktd~avqil-~~lyhn~p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806 737 VKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQIL-SVLYHNSPNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred HCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHH-HHHHHCCCCCCEEEEEECCCCHHHHHHHHHHC
T ss_conf 20688999998834787754630699999743024454-45651698762489985231256787777861
No 274
>pfam00006 ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain. This family includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Probab=90.88 E-value=0.3 Score=28.56 Aligned_cols=52 Identities=15% Similarity=0.131 Sum_probs=33.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 888799848889967999999999982478988956677687899999999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
+..++|.|+||+|||+.+..-+.+.-.+++. =++++--...-+.|+.+.+..
T Consensus 15 GQr~~I~g~~g~GKt~l~~~i~~~~~~~~~~--V~~~iGer~~ev~~~~~~~~~ 66 (213)
T pfam00006 15 GQRIGIFGGSGTGKTVLLGMIARNAKADVVE--VYVLIGERGREVAEFIEELLG 66 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCE--EEEECCCCHHHHHHHHHHHHC
T ss_conf 8887787899998899999999856618935--998137777999999997521
No 275
>PTZ00301 uridine kinase; Provisional
Probab=90.87 E-value=0.13 Score=31.20 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=18.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 799848889967999999999982478988956
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL 66 (242)
+-|.+|-||||||.- .+++..+.....|..+.
T Consensus 6 IgIaGgSgSGKTT~a-~~i~~~l~~~~~~~~v~ 37 (210)
T PTZ00301 6 IGISGASGSGKSSLS-TNIVSELMAHCGPVSIG 37 (210)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHHHHCCCCCEE
T ss_conf 999688767899999-99999987614998079
No 276
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=90.87 E-value=0.26 Score=28.94 Aligned_cols=78 Identities=22% Similarity=0.178 Sum_probs=51.5
Q ss_pred HHHHHHHHHCC---CHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHH-HH-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88897323509---48999982768887998488899679999999999-82-478988956677687899999999999
Q 537021.9.peg.4 10 HSETIDLISQT---KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 10 ~~~~~~~~~~~---~~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~l-l~-~g~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
|-+++.++... +.+=..+..++..++-.+==|||||||-.-...|| .. .|-+|= +.+|=--|-||-|=-..|.+
T Consensus 78 ~eEL~~~LG~~~~E~~~L~~~~~~P~vilmvGLQGsGKTTt~gKLA~~ll~kk~~~kvL-Lva~D~yRPAA~~QL~~Lg~ 156 (439)
T TIGR00959 78 HEELVAILGGKGRESAELKLAEKRPTVILMVGLQGSGKTTTAGKLALYLLKKKEGKKVL-LVACDLYRPAAIEQLKVLGE 156 (439)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEE-EEEHHCCCHHHHHHHHHHHH
T ss_conf 68999851666732567555678683899731378857889999999999986389703-40321034789999999767
Q ss_pred HHHH
Q ss_conf 9677
Q 537021.9.peg.4 85 IITA 88 (242)
Q Consensus 85 ~l~~ 88 (242)
+.+-
T Consensus 157 Q~gV 160 (439)
T TIGR00959 157 QVGV 160 (439)
T ss_pred HCCC
T ss_conf 5288
No 277
>PRK06620 hypothetical protein; Validated
Probab=90.81 E-value=0.19 Score=29.87 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=13.9
Q ss_pred CCEEEEECCCCCHHHHH
Q ss_conf 88799848889967999
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHIL 48 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL 48 (242)
..+++.|++|||||+.+
T Consensus 45 ~~l~I~Gp~gSGKTHL~ 61 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLT 61 (214)
T ss_pred CEEEEECCCCCCHHHHH
T ss_conf 55999879999889999
No 278
>pfam01935 DUF87 Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=90.79 E-value=0.32 Score=28.29 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 888799848889967999999999982
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
.+++.|.|..|||||++..-.+..++.
T Consensus 23 ~rH~aIlg~TGsGKS~tv~vLl~~l~~ 49 (218)
T pfam01935 23 SRHFAILGSTGSGKSNTVAVLLEELLE 49 (218)
T ss_pred HHHEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 421478726999769999999999985
No 279
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.73 E-value=0.29 Score=28.60 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=22.9
Q ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9827688879984888996799999999998
Q 537021.9.peg.4 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 26 ~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
.+....++++|.++.|||||+.|-. +..++
T Consensus 138 ~~ie~~~siii~G~t~sGKTt~lna-ll~~I 167 (312)
T COG0630 138 LAIEARKSIIICGGTASGKTTLLNA-LLDFI 167 (312)
T ss_pred HHHHCCCCEEEECCCCCCHHHHHHH-HHHHC
T ss_conf 9997699499988888864959999-98637
No 280
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=90.72 E-value=0.32 Score=28.29 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=23.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 688879984888996799999999998247898
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P 62 (242)
.++-+|+.+|||||||-.-+ -+++-|..++|-
T Consensus 64 aGrgiLi~GppgTGKTAlA~-gIa~eLG~dvPF 95 (450)
T COG1224 64 AGRGILIVGPPGTGKTALAM-GIARELGEDVPF 95 (450)
T ss_pred CCCEEEEECCCCCCHHHHHH-HHHHHHCCCCCC
T ss_conf 66179997899976889999-999985899982
No 281
>COG3911 Predicted ATPase [General function prediction only]
Probab=90.71 E-value=0.19 Score=30.01 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=15.6
Q ss_pred CEEEEECCCCCHHHHHHH
Q ss_conf 879984888996799999
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQ 50 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~ 50 (242)
-.++.+|||+|||+.|..
T Consensus 11 ~fIltGgpGaGKTtLL~a 28 (183)
T COG3911 11 RFILTGGPGAGKTTLLAA 28 (183)
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 899837999768999999
No 282
>pfam04310 MukB MukB N-terminal. This family represents the N-terminal region of MukB, one of a group of bacterial proteins essential for the movement of nucleoids from mid-cell towards the cell quarters (i.e. chromosome partitioning). The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif (in other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands).
Probab=90.66 E-value=1.4 Score=23.81 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.8
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 998488899679999999999824
Q 537021.9.peg.4 35 WVSANAGSGKTHILVQRVLRLLLA 58 (242)
Q Consensus 35 lV~A~aGSGKT~tL~~rv~~ll~~ 58 (242)
-.+++-|.|||+++..-+.-||-+
T Consensus 31 tLsG~NGAGKsT~m~Af~talIPD 54 (227)
T pfam04310 31 TLSGGNGAGKSTTMAAFITALIPD 54 (227)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 864478765487999999986666
No 283
>PRK08727 hypothetical protein; Validated
Probab=90.66 E-value=0.46 Score=27.26 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=20.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 688879984888996799999999998247
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
+..++.+.+++|||||+.+-.-.......|
T Consensus 40 ~~~~lyl~G~~GsGKTHLl~a~~~~~~~~~ 69 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALSLCAAAEQAG 69 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 889899989999988999999999998279
No 284
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=90.65 E-value=0.3 Score=28.50 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=40.4
Q ss_pred HCCCHHHHHHH----CCCCC----EEEEECCCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHH
Q ss_conf 50948999982----76888----79984888996799999999998247-----89889566776878
Q 537021.9.peg.4 18 SQTKSEQLLAS----DPTRS----AWVSANAGSGKTHILVQRVLRLLLAN-----AHPSTLLCLTHTKA 73 (242)
Q Consensus 18 ~~~~~qq~~a~----~~~~~----~lV~A~aGSGKT~tL~~rv~~ll~~g-----~~P~~IL~lTFT~k 73 (242)
..|+.|++++. |...| -|+.+-=|||||-+.+--.+..+..| ..|.+||+=-.-..
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~ 330 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYES 330 (677)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHH
T ss_conf 767899999999986644866667875267677789999999999987288168866379999999999
No 285
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=90.60 E-value=0.36 Score=28.01 Aligned_cols=27 Identities=26% Similarity=0.584 Sum_probs=19.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH-HCCCC
Q ss_conf 79984888996799999999998-24789
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLL-LANAH 61 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll-~~g~~ 61 (242)
+++-+.||+||||.+ .+++..+ ..|.+
T Consensus 2 i~ITG~pGvGKTTli-~kv~~~l~~~~~~ 29 (168)
T pfam03266 2 IFITGPPGVGKTTLV-KKVIELLKSEGVK 29 (168)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHHHCCCE
T ss_conf 899789998899999-9999999867970
No 286
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=90.60 E-value=0.25 Score=29.06 Aligned_cols=53 Identities=25% Similarity=0.291 Sum_probs=38.3
Q ss_pred EEECCCCCHHHHHHHHHHH-HHHCCCC------H---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9848889967999999999-9824789------8---89566776878999999999999677
Q 537021.9.peg.4 36 VSANAGSGKTHILVQRVLR-LLLANAH------P---STLLCLTHTKAAAAEMSHRVLEIITA 88 (242)
Q Consensus 36 V~A~aGSGKT~tL~~rv~~-ll~~g~~------P---~~IL~lTFT~kAA~El~~RI~~~l~~ 88 (242)
|.|+-|||||-.--.=++. |+.++.+ | -++|.||+.|+=++.+...+...+..
T Consensus 1 VvAPTGSGKTLAAFL~aLd~L~~~~~~~~~~~~~~~~~~VLYISPLKALa~Dv~rNL~~PL~g 63 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKG 63 (1490)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 959887439899999999999961455555567889738999592788899999999879988
No 287
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=90.58 E-value=0.51 Score=26.90 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=29.4
Q ss_pred CCCCEE-EEECCCCCHHHHHHHHHHHHHHCC-----------CCHHHHHHHH
Q ss_conf 688879-984888996799999999998247-----------8988956677
Q 537021.9.peg.4 30 PTRSAW-VSANAGSGKTHILVQRVLRLLLAN-----------AHPSTLLCLT 69 (242)
Q Consensus 30 ~~~~~l-V~A~aGSGKT~tL~~rv~~ll~~g-----------~~P~~IL~lT 69 (242)
|.|.+. |-+++|||||+.-.+.++.....| .+|+++..+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~ 109 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLG 109 (279)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 5535899846887654668999988865379808999589998999999988
No 288
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=90.56 E-value=0.35 Score=28.05 Aligned_cols=28 Identities=21% Similarity=0.158 Sum_probs=23.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 7998488899679999999999824789
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANAH 61 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~ 61 (242)
++|.++.+||||+.+-..+-+++.+|-.
T Consensus 3 v~i~G~~~sGKttl~~~L~~~~~~~g~~ 30 (122)
T pfam03205 3 VLVVGPKDSGKTTLIRKLLNYLKRRGYR 30 (122)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9999489998999999999999987994
No 289
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=90.51 E-value=0.49 Score=27.02 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=34.4
Q ss_pred CCCCEEEEECCCCCHHHH-HHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 688879984888996799-9999999982-47898895667768789999999999996
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHI-LVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~t-L~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~RI~~~l 86 (242)
-.+-++|+||-|||||.. |+--+.+... .| .+|++-|-|..=-+.+..+....+
T Consensus 15 ~~~v~lVEAGTGTGKSLAYLvPAl~~a~~~~g---~rVVISTaT~aLQeQL~~kd~pl~ 70 (636)
T TIGR03117 15 QKRIGMLEASTGVGKTLAMIMAALTMLKERPD---QKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCC---CCEEEECCCHHHHHHHHHHHHHHH
T ss_conf 38489998999710889999999999985799---988997987999999976656599
No 290
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=90.46 E-value=0.28 Score=28.73 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=25.0
Q ss_pred CHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 489999827688879984888996799999999998
Q 537021.9.peg.4 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 21 ~~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
-++-+.++..+.||||.+.+||||+. +.|..|-.
T Consensus 12 ~~~i~~~a~~~~pVLI~GE~GtGK~~--lAr~IH~~ 45 (168)
T pfam00158 12 LELAKRVAPTDATVLITGESGTGKEL--FARAIHQL 45 (168)
T ss_pred HHHHHHHHCCCCCEEEECCCCCCHHH--HHHHHHHH
T ss_conf 99999995889988998999888899--99999985
No 291
>PTZ00088 adenylate kinase 1; Provisional
Probab=90.46 E-value=0.34 Score=28.18 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=23.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHH-HCCCCHHHHHH
Q ss_conf 879984888996799999999998-24789889566
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll-~~g~~P~~IL~ 67 (242)
.++++++|||||+| .+.+++... ..-+++..+|-
T Consensus 2 ~iillGpPGsGKgT-~a~~l~~~~~~~hiStGdllR 36 (225)
T PTZ00088 2 KIVLFGAPGVGKGT-FAEILSKKEKLKHINMGNILR 36 (225)
T ss_pred EEEEECCCCCCHHH-HHHHHHHHHCCEEECHHHHHH
T ss_conf 79998999998799-999999987990687899999
No 292
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=90.42 E-value=0.24 Score=29.27 Aligned_cols=26 Identities=38% Similarity=0.517 Sum_probs=19.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 688879984888996799999999998
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
|=|=|||=+|-|||||-|| .=-++.|
T Consensus 325 PqGMvLVTGPTGSGKTVSL-YTaLniL 350 (577)
T TIGR02538 325 PQGMVLVTGPTGSGKTVSL-YTALNIL 350 (577)
T ss_pred CCCCEEEECCCCCCHHHHH-HHHHCCC
T ss_conf 9972886266598416878-7631125
No 293
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=90.35 E-value=0.36 Score=28.01 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=20.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 79984888996799999999998247
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
|.|.++||+||||.|-..|-+...+.
T Consensus 42 VavvGPpgvGKtTLiksLvk~ytk~~ 67 (225)
T cd01882 42 VAVVGPPGVGKTTLIKSLVKNYTKQN 67 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99989899778899999999985443
No 294
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.33 E-value=0.12 Score=31.22 Aligned_cols=47 Identities=13% Similarity=0.175 Sum_probs=28.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHH-HCCCCHHHHHHH---HHHHHHHHHHH
Q ss_conf 88879984888996799999999998-247898895667---76878999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL---THTKAAAAEMS 79 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll-~~g~~P~~IL~l---TFT~kAA~El~ 79 (242)
+|-+-.+++.|.|||||++...++.+ ..|.+ +|..| ||-=-|...++
T Consensus 348 gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~--~valit~DtyRiga~eQL~ 398 (557)
T PRK12727 348 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPR--DVALVTTDTQRVGGREQLH 398 (557)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC--EEEEEECCCCCHHHHHHHH
T ss_conf 76478743777673117999999999973998--1899972664087999999
No 295
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=90.31 E-value=0.16 Score=30.50 Aligned_cols=60 Identities=20% Similarity=0.255 Sum_probs=41.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88879984888996799999999998247-------89889566776878999999999999677521
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLAN-------AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g-------~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~ 91 (242)
+-=|+|.+=-||||||-| -.|+==|..| +.|.+|-|=|--+.=|.||..-+.+.+|=..+
T Consensus 84 nQVviiAGETGSGKTTQL-PKICLELGrG~~GlIGHTQPRRlAAR~VA~R~AeELgtplGe~VGYkVR 150 (1320)
T TIGR01967 84 NQVVIIAGETGSGKTTQL-PKICLELGRGSRGLIGHTQPRRLAARSVAERVAEELGTPLGELVGYKVR 150 (1320)
T ss_pred CCEEEEECCCCCCCCCCC-HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 898999724487620232-1677754278765412471468899999999999838898861320366
No 296
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=90.31 E-value=1 Score=24.76 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=15.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 79984888996799999999998
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
+-|.++|||||||+- ..++..+
T Consensus 2 IaIdGpagsGKsT~a-k~lA~~l 23 (147)
T cd02020 2 IAIDGPAGSGKSTVA-KLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHH-HHHHHHH
T ss_conf 888689978989999-9999990
No 297
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=90.25 E-value=0.2 Score=29.76 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=17.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHH
Q ss_conf 8887998488899679999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRV 52 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv 52 (242)
+-.+=|.|+||+||||.|...+
T Consensus 153 GQRiGIFA~aG~GKSTLL~~i~ 174 (430)
T TIGR02546 153 GQRIGIFAGAGVGKSTLLGMIA 174 (430)
T ss_pred CCEEEEEECCCCCHHHHHHHHH
T ss_conf 5305787088861668999986
No 298
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=90.24 E-value=0.35 Score=28.10 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=24.9
Q ss_pred CHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 489999827688879984888996799999999998
Q 537021.9.peg.4 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 21 ~~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
-++-+.++..+.||||.+-+||||+.. .|..|..
T Consensus 19 ~~~~~~~A~~~~pVLI~GE~GtGK~~~--Ar~IH~~ 52 (325)
T PRK11608 19 LEQVSHLAPLDKPVLIIGERGTGKELI--ASRLHYL 52 (325)
T ss_pred HHHHHHHHCCCCCEEEECCCCCCHHHH--HHHHHHC
T ss_conf 999999968899989889898379999--9999965
No 299
>KOG0340 consensus
Probab=90.15 E-value=0.41 Score=27.57 Aligned_cols=73 Identities=26% Similarity=0.327 Sum_probs=49.2
Q ss_pred HHHHHHHHHCCCHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHH--HHHHHHHHHHHHHHHHHHHH
Q ss_conf 88897323509489999827--688879984888996799999999998247898895--66776878999999999999
Q 537021.9.peg.4 10 HSETIDLISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL--LCLTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 10 ~~~~~~~~~~~~~qq~~a~~--~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~I--L~lTFT~kAA~El~~RI~~~ 85 (242)
--+...+-.+|+=|+.-+-. .++..+=-|--|||||+..+.-+..-+.+ +|..| |++|+|+ |+.-+|.+.
T Consensus 21 ~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLse--dP~giFalvlTPTr----ELA~QiaEQ 94 (442)
T KOG0340 21 QLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSE--DPYGIFALVLTPTR----ELALQIAEQ 94 (442)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC--CCCCCEEEEECCHH----HHHHHHHHH
T ss_conf 999835889982676524878546631031346887411222787776133--88760699954528----888888899
Q ss_pred HHH
Q ss_conf 677
Q 537021.9.peg.4 86 ITA 88 (242)
Q Consensus 86 l~~ 88 (242)
+..
T Consensus 95 F~a 97 (442)
T KOG0340 95 FIA 97 (442)
T ss_pred HHH
T ss_conf 998
No 300
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=90.09 E-value=0.35 Score=28.09 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=22.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 7688879984888996799999999998247
Q 537021.9.peg.4 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 29 ~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
.|-++.+..+++|+|||. |+..++..+..+
T Consensus 1 ~p~~~~l~~GPsGvGKT~-lAk~la~~l~~~ 30 (168)
T pfam07724 1 RPIGSFLFLGPTGVGKTE-LAKALAELLFGD 30 (168)
T ss_pred CCCEEEEEECCCCCCHHH-HHHHHHHHHCCC
T ss_conf 983799988989989999-999999996798
No 301
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=90.04 E-value=0.4 Score=27.63 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=22.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 68887998488899679999999999824789
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~ 61 (242)
+++-+|+.++||||||-.- .-++.-|..++|
T Consensus 49 aGraiLlaGppGTGKTAlA-~aiakeLG~~vP 79 (395)
T pfam06068 49 AGRAVLIAGPPGTGKTALA-IAISKELGEDTP 79 (395)
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHHHHCCCCC
T ss_conf 7738998779998889999-999997487997
No 302
>PRK06851 hypothetical protein; Provisional
Probab=90.02 E-value=0.17 Score=30.24 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=23.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 68887998488899679999999999824789
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~ 61 (242)
..+-.++-+||||||++.|-..-..++.+|-+
T Consensus 30 ~~ri~ilKGGpGtGKStlmK~ig~~~~~~Gyd 61 (368)
T PRK06851 30 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYD 61 (368)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 12799996899977899999999999968983
No 303
>PRK03839 putative kinase; Provisional
Probab=89.98 E-value=0.19 Score=29.87 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=14.1
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 79984888996799999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVL 53 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~ 53 (242)
++|-+.|||||||+ +..++
T Consensus 3 I~ITGTPGtGKTTv-a~~La 21 (180)
T PRK03839 3 IAITGTPGVGKTTI-SKLLA 21 (180)
T ss_pred EEEECCCCCCHHHH-HHHHH
T ss_conf 99978999998999-99999
No 304
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=89.93 E-value=0.33 Score=28.29 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=16.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 799848889967999999999982
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
+.|.++.||||||. +..+...+.
T Consensus 2 IgI~G~sgsGKTT~-a~~L~~~l~ 24 (198)
T cd02023 2 IGIAGGSGSGKTTV-AEEIIEQLG 24 (198)
T ss_pred EEEECCCCCCHHHH-HHHHHHHHC
T ss_conf 89889998859999-999999809
No 305
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=89.86 E-value=1.3 Score=23.95 Aligned_cols=57 Identities=14% Similarity=0.125 Sum_probs=30.8
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 768887998488899679999999999824789889566776878999999999999677
Q 537021.9.peg.4 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 (242)
Q Consensus 29 ~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~ 88 (242)
.+.+.+|..++||||||..-.+ ++... +.+--++..-..+.+=..|-...|+..+..
T Consensus 274 ~~~~giLl~GpPGtGKT~lAka-va~~~--~~~fi~v~~~~l~sk~vGesek~ir~~F~~ 330 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKA-VALES--RSRFISVKGSELLSKWVGESEKNIRELFEK 330 (494)
T ss_pred CCCCEEEEECCCCCCHHHHHHH-HHHHC--CCCEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8883699988999758999999-87544--982488433555407765999999999999
No 306
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=89.79 E-value=0.34 Score=28.14 Aligned_cols=134 Identities=19% Similarity=0.279 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHHHH-CC-CCHHHHHHHH----------HHHHH
Q ss_conf 888889732350948999982-76888799848889967999999999982-47-8988956677----------68789
Q 537021.9.peg.4 8 QEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-AN-AHPSTLLCLT----------HTKAA 74 (242)
Q Consensus 8 ~~~~~~~~~~~~~~~qq~~a~-~~~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g-~~P~~IL~lT----------FT~kA 74 (242)
.|.+++. ++.....+...+. .|.-+...-+.||||||++- .+.+.++. -| +.-.+++.+| .|---
T Consensus 35 ~~~a~ll-lv~~~r~~~~l~~~~P~lhm~ftG~PGtGkttva-~~m~~~l~~lGy~r~G~~~~~trddlvGqy~GhtaPk 112 (284)
T TIGR02880 35 REIAALL-LVERLRQKLGLASAAPSLHMSFTGNPGTGKTTVA-LRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPK 112 (284)
T ss_pred HHHHHHH-HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH-HHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHCCCCCH
T ss_conf 9999999-9999998742210488326775168987248999-9999999871540036267853001311221257722
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999677521674221464997314799978-99999999999983100132111799998755542897588
Q 537021.9.peg.4 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKS-DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 (242)
Q Consensus 75 A~El~~RI~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~ilr~~~~~~gl 153 (242)
+.|+..|-.. .-.+.+-..++..+.++. -..++...+....+|...--+..+-++..+.-.-|...-|+
T Consensus 113 tke~lk~a~G----------Gvlfideayyly~P~nerdyG~eaieillq~men~r~~lvvi~aGy~~rm~~f~~snPG~ 182 (284)
T TIGR02880 113 TKEVLKRAMG----------GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGL 182 (284)
T ss_pred HHHHHHHHCC----------CEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCH
T ss_conf 6899987428----------736642203321776410223799999999872365537888717078888875117862
No 307
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=89.77 E-value=0.31 Score=28.44 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=23.0
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 7688879984888996799999999998247
Q 537021.9.peg.4 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 29 ~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
..+.||=..+|||||||+.- .-+++-+.+.
T Consensus 19 ~~G~PvHl~GPaG~GKT~LA-~hvA~~r~RP 48 (265)
T TIGR02640 19 KSGYPVHLRGPAGTGKTTLA-MHVARKRDRP 48 (265)
T ss_pred CCCCCEEEECCCCCCHHHHH-HHHHHHCCCC
T ss_conf 27886674478885568999-9999736896
No 308
>TIGR01360 aden_kin_iso1 adenylate kinase; InterPro: IPR006267 Members of this family are adenylate kinase, 2.7.4.3 from EC. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (IPR006266 from INTERPRO), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in IPR006259 from INTERPRO.; GO: 0004017 adenylate kinase activity, 0005524 ATP binding, 0046034 ATP metabolic process, 0005737 cytoplasm.
Probab=89.76 E-value=0.15 Score=30.63 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=18.2
Q ss_pred EEEEECCCCCHHHH---HHHHHHH-HHHCC
Q ss_conf 79984888996799---9999999-98247
Q 537021.9.peg.4 34 AWVSANAGSGKTHI---LVQRVLR-LLLAN 59 (242)
Q Consensus 34 ~lV~A~aGSGKT~t---L~~rv~~-ll~~g 59 (242)
++|++||||||=|- ||+.|-+ +|..|
T Consensus 6 iFivGGPGSGKGTQC~KiV~KYGfTHLSsG 35 (191)
T TIGR01360 6 IFIVGGPGSGKGTQCEKIVEKYGFTHLSSG 35 (191)
T ss_pred EEEECCCCCCCCHHHHHHHHHCCCCCCCHH
T ss_conf 888658888840136898864188645406
No 309
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=89.69 E-value=0.23 Score=29.33 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHH-HCCCCHHHHH
Q ss_conf 8879984888996799999999998-2478988956
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLL 66 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll-~~g~~P~~IL 66 (242)
-.+.|-+.||+||||.+ .+++..| .+|....-++
T Consensus 6 mki~ITG~PGvGKtTl~-~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 6 MKIFITGRPGVGKTTLV-LKIAEKLREKGYKVGGFI 40 (179)
T ss_pred EEEEEECCCCCCHHHHH-HHHHHHHHHCCCEEEEEE
T ss_conf 59998679984589999-999999985596651398
No 310
>PRK13695 putative NTPase; Provisional
Probab=89.67 E-value=0.45 Score=27.27 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=20.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHH-CCCC
Q ss_conf 8799848889967999999999982-4789
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLL-ANAH 61 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~ 61 (242)
-+++-+.||+||||.+ .++...|. .|..
T Consensus 5 kI~iTG~PGvGKTTli-~Kv~~~L~~~g~~ 33 (174)
T PRK13695 5 RIGITGMPGVGKTTLV-LKIAELLAREGYK 33 (174)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHHHCCCE
T ss_conf 9998789998899999-9999998636961
No 311
>KOG0743 consensus
Probab=89.57 E-value=0.24 Score=29.20 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=18.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 887998488899679999999999
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRL 55 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~l 55 (242)
+.=|.-+|||||||+.|+...-+|
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743 236 RGYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred CCCEEECCCCCCHHHHHHHHHHHC
T ss_conf 041204799998889999997205
No 312
>pfam02702 KdpD Osmosensitive K+ channel His kinase sensor domain. This is a family of KdpD sensor kinase proteins that regulate the kdpFABC operon responsible for potassium transport. The aligned region corresponds to the N-terminal cytoplasmic part of the protein which may be the sensor domain responsible for sensing turgor pressure.
Probab=89.47 E-value=0.51 Score=26.93 Aligned_cols=50 Identities=22% Similarity=0.239 Sum_probs=37.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79984888996799999999998247898895667768789999999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~ 83 (242)
+..-++||.|||+.+....-.+..+|++.===.+=|..++.+.+|.+.+.
T Consensus 8 IylG~apGVGKTy~ML~eA~~l~~~G~DVViG~vEthgR~eT~~l~~gLe 57 (211)
T pfam02702 8 IFLGAAPGVGKTYAMLSEAHELLERGVDVVIGYVETHGRAETAALLEGLE 57 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCC
T ss_conf 98535998778999999999999789956999953799789999976876
No 313
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=89.32 E-value=0.45 Score=27.32 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=19.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 888799848889967999999999982
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
+-++++-+.+|||||.+. ..+...|.
T Consensus 43 P~Ni~iYGkTGtGKT~vt-~~v~~~l~ 68 (383)
T TIGR02928 43 PSNIFIYGKTGTGKTAVT-KYVMKELE 68 (383)
T ss_pred CCCEEEECCCCCCHHHHH-HHHHHHHH
T ss_conf 872588788898788999-99999999
No 314
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=89.26 E-value=0.47 Score=27.14 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=18.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH-HCCCC
Q ss_conf 79984888996799999999998-24789
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLL-LANAH 61 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll-~~g~~ 61 (242)
+-|.+|.||||||. ++++...+ .+|..
T Consensus 2 IgIaG~SgSGKTT~-a~~L~~~l~~~~~~ 29 (179)
T cd02028 2 VGIAGPSGSGKTTF-AKKLSNQLRVNGIG 29 (179)
T ss_pred EEEECCCCCCHHHH-HHHHHHHHHHCCCC
T ss_conf 89989897789999-99999998464885
No 315
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=89.24 E-value=1.6 Score=23.34 Aligned_cols=89 Identities=15% Similarity=0.179 Sum_probs=45.7
Q ss_pred CCC-EEEEECCCCCHHHHHHHHHHHHHH--CC---CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 888-799848889967999999999982--47---8988956677687899999999-9999677521674221464997
Q 537021.9.peg.4 31 TRS-AWVSANAGSGKTHILVQRVLRLLL--AN---AHPSTLLCLTHTKAAAAEMSHR-VLEIITAWSHLSDEILSAEITK 103 (242)
Q Consensus 31 ~~~-~lV~A~aGSGKT~tL~~rv~~ll~--~g---~~P~~IL~lTFT~kAA~El~~R-I~~~l~~~~~~~~~~~~~~l~~ 103 (242)
.|- .++.+.-||||||++ .-+=|||+ .| ++-+.|.- .+..--+|.|.| |.=.++.++-.|+-+.-.....
T Consensus 18 ~GEi~vi~GlSGsGKsT~v-rmlNRLIEPt~G~i~IDG~~I~~--~~~~eLREVRRkKI~~V~Q~~aLfPHmTil~N~~~ 94 (372)
T TIGR01186 18 KGEIFVIMGLSGSGKSTLV-RMLNRLIEPTAGQIFIDGENIMK--ISDVELREVRRKKIGMVFQQFALFPHMTILQNTSL 94 (372)
T ss_pred CCEEEEEECCCCCCHHHHH-HHHHHCCCCCCCCEEECCHHHHC--CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 5438999778998578999-99872257778746766214313--69347544424566565444302764157778777
Q ss_pred --HHCCCCCHHHHHHHHHHHH
Q ss_conf --3147999789999999999
Q 537021.9.peg.4 104 --IQGKKPNKSDMSKARHLLI 122 (242)
Q Consensus 104 --~~~~~~~~~~~~~~~~ll~ 122 (242)
.+..-+......+|+..|+
T Consensus 95 g~~L~g~~~~~R~ekAle~Lk 115 (372)
T TIGR01186 95 GLELLGIPEQERKEKALELLK 115 (372)
T ss_pred HHHHCCCCHHHHHHHHHHHHH
T ss_conf 477518867788999998764
No 316
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=89.13 E-value=0.34 Score=28.14 Aligned_cols=16 Identities=38% Similarity=0.408 Sum_probs=12.9
Q ss_pred EEEEECCCCCHHHHHH
Q ss_conf 7998488899679999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILV 49 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~ 49 (242)
+-|.+.|||||||+-.
T Consensus 3 ItIsG~pGsG~TTva~ 18 (179)
T COG1102 3 ITISGLPGSGKTTVAR 18 (179)
T ss_pred EEECCCCCCCCHHHHH
T ss_conf 9961799997027999
No 317
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=89.08 E-value=0.29 Score=28.61 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=22.3
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 99848889967999999999982478988
Q 537021.9.peg.4 35 WVSANAGSGKTHILVQRVLRLLLANAHPS 63 (242)
Q Consensus 35 lV~A~aGSGKT~tL~~rv~~ll~~g~~P~ 63 (242)
-|.+.=+||||+.|..-|-.|-.+|.++.
T Consensus 3 ~i~G~k~SGKTtL~~~l~~~L~~~Gy~V~ 31 (165)
T TIGR00176 3 QIVGYKNSGKTTLIERLVKALKARGYRVA 31 (165)
T ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 78962588678999999999970799508
No 318
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=89.05 E-value=0.49 Score=27.05 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=30.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8887998488899679999999999824789889566776878999999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI 82 (242)
.|+-+|.++.|||||+.+.-..+.+-.- .| + ++-|-+.-..++--|.
T Consensus 446 ~GHtlI~G~TGsGKTtl~~fL~aq~~ky--~~-~--~f~fDkd~~~~i~~~a 492 (800)
T PRK13898 446 VGHTLIIGPTGAGKTVLMNFLCAQAMKF--SP-R--MFFFDKDRGAEIFIRA 492 (800)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHH--CC-E--EEEEECCCCHHHHHHH
T ss_conf 7756998999998999999999998754--88-7--9999799986999998
No 319
>pfam05707 Zot Zonular occludens toxin (Zot). This family consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophages present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers
Probab=88.95 E-value=0.42 Score=27.53 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=21.2
Q ss_pred EEEEECCCCCHHHHHHHH-HHHHHHCC
Q ss_conf 799848889967999999-99998247
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQR-VLRLLLAN 59 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~r-v~~ll~~g 59 (242)
-++.+.||||||.-.|.. +...+.+|
T Consensus 3 ~litG~pGsGKS~~aV~~~i~~al~~G 29 (183)
T pfam05707 3 YLITGKPGSGKTLEAVSYHILPALKKG 29 (183)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 999359999622999999999998789
No 320
>PRK05642 DNA replication initiation factor; Validated
Probab=88.91 E-value=0.68 Score=26.02 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=19.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHH-HCC
Q ss_conf 8879984888996799999999998-247
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLL-LAN 59 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll-~~g 59 (242)
.++.+.+++|+|||+.|-. +++.. ..|
T Consensus 46 ~~l~i~G~~G~GKTHLL~A-~~~~~~~~~ 73 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQA-ACLRFEQRG 73 (234)
T ss_pred CEEEEECCCCCCHHHHHHH-HHHHHHHCC
T ss_conf 8389988999988999999-999998079
No 321
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=88.91 E-value=0.25 Score=29.13 Aligned_cols=28 Identities=29% Similarity=0.129 Sum_probs=21.9
Q ss_pred CCEEEEECC----CCCHHHHHHHHHHHHHHCC
Q ss_conf 887998488----8996799999999998247
Q 537021.9.peg.4 32 RSAWVSANA----GSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 32 ~~~lV~A~a----GSGKT~tL~~rv~~ll~~g 59 (242)
.+..|+|-+ |+|||||-++...+|-.+|
T Consensus 104 ~~~~VIAVaNqKGGvGKTTTavnLA~~LAl~G 135 (388)
T PRK13705 104 EFPPVIGVAAHKGGVYKTSVSVHLAQDLALKG 135 (388)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 98728999527888559999999999999779
No 322
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=88.89 E-value=0.28 Score=28.74 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=29.3
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88879984888996799999999998247898895667768789999999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~ 83 (242)
+...+|.|++|+|||+.+...+.+.......-.=+.++=-...-+.|+.+.+.
T Consensus 69 GQR~~I~~~~g~GKt~ll~~ii~~~~~~~~~v~V~~~IGer~~ev~~~~~~~~ 121 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMK 121 (274)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHC
T ss_conf 85778757999982368999999998508987999984255488999999720
No 323
>KOG2227 consensus
Probab=88.89 E-value=0.58 Score=26.51 Aligned_cols=39 Identities=28% Similarity=0.416 Sum_probs=29.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 768887998488899679999999999824789889566
Q 537021.9.peg.4 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 (242)
Q Consensus 29 ~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~ 67 (242)
.+.|++-|.+.||||||-.+-.-+..+-..+..|..+-+
T Consensus 173 ~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~i 211 (529)
T KOG2227 173 NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYI 211 (529)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 667645751799865488999998740343166516998
No 324
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=88.81 E-value=0.51 Score=26.92 Aligned_cols=50 Identities=16% Similarity=0.170 Sum_probs=29.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 888799848889967999999999982478-9889566776878999999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~-~P~~IL~lTFT~kAA~El~~RI 82 (242)
.|+-+|+++.|||||+.+.-.++.+-.-.. +..+|++ |-+.-..++--|.
T Consensus 426 ~GHt~I~G~TGsGKTtll~fL~aq~~ky~~~~~~~~~~--fDkd~s~~i~~~a 476 (789)
T PRK13853 426 VGMTAIFGPIGRGKTTLMTFILAMLEQSMVDRAGAVVF--FDKDRGGELLVRA 476 (789)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE--EECCCCHHHHHHH
T ss_conf 77448878999988999999999999742235770899--9588638999998
No 325
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=88.69 E-value=0.33 Score=28.21 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=22.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 79984888996799999999998247
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
+++++.||-||||+-++...-+-..|
T Consensus 107 aItS~~pGEGKS~vAaNLA~~~Aq~G 132 (274)
T TIGR03029 107 AVVSAKSGEGCSYIAANLAIVFSQLG 132 (274)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99689999989999999999999679
No 326
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=88.66 E-value=0.41 Score=27.55 Aligned_cols=31 Identities=16% Similarity=0.344 Sum_probs=21.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH-HCCCCHHHH
Q ss_conf 79984888996799999999998-247898895
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll-~~g~~P~~I 65 (242)
+-|.+|.||||||.- .++...+ ..|+.+..+
T Consensus 2 IgIaG~SgSGKTT~a-~~L~~~l~~~~~~~~~~ 33 (196)
T pfam00485 2 IGVAGSSGAGKTTVA-RTFVSIFGREGVPAAGI 33 (196)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHCCCCCCCCCC
T ss_conf 899899857199999-99999966058776412
No 327
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=88.59 E-value=0.38 Score=27.78 Aligned_cols=23 Identities=35% Similarity=0.261 Sum_probs=16.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 79984888996799999999998
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
.+|.+.||||||++=..-..+|=
T Consensus 1 ~VlmGvaG~GKs~~a~~l~~~lg 23 (175)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (175)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
T ss_conf 96760278628899999999854
No 328
>PRK09087 hypothetical protein; Validated
Probab=88.52 E-value=0.41 Score=27.59 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=14.1
Q ss_pred CCCEEEEECCCCCHHHHH
Q ss_conf 888799848889967999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHIL 48 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL 48 (242)
.+.+.+.+++|||||+.+
T Consensus 44 ~~~~~L~Gp~gsGKTHL~ 61 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CCEEEEECCCCCCHHHHH
T ss_conf 775899899999886999
No 329
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=88.50 E-value=2 Score=22.71 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=19.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 688879984888996799999999
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVL 53 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~ 53 (242)
++..+.|.+.+|.|||+...++..
T Consensus 93 ~g~l~~vyg~~g~gKt~a~~~y~~ 116 (297)
T COG2842 93 TGSLVVVYGYAGLGKTQAAKNYAP 116 (297)
T ss_pred CCCEEEEECCCCCHHHHHHHHHCC
T ss_conf 685478863322006899986533
No 330
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=88.48 E-value=0.19 Score=29.97 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=19.9
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 984888996799999999998247
Q 537021.9.peg.4 36 VSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 36 V~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
|-++||+|||+.+-..+.++..+|
T Consensus 4 itG~pGaGKStLi~~l~~~~~~~g 27 (148)
T cd03114 4 ITGVPGAGKSTLIDALITALRARG 27 (148)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 258997878999999999999789
No 331
>PRK00131 aroK shikimate kinase; Reviewed
Probab=88.47 E-value=0.33 Score=28.20 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=18.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 88879984888996799999999998
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
..++++++.|||||||+= ..++..+
T Consensus 4 ~~nI~liG~~GsGKTtvg-k~LA~~L 28 (175)
T PRK00131 4 GPNIVLIGMMGAGKSTIG-RLLAKRL 28 (175)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHH
T ss_conf 980898889999989999-9999995
No 332
>KOG3928 consensus
Probab=88.41 E-value=0.53 Score=26.80 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=28.1
Q ss_pred HHHHH--CCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99982--7688879984888996799999999998247
Q 537021.9.peg.4 24 QLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 24 q~~a~--~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
++.++ .|.+..+.-+.||||||-+|++-+.+...++
T Consensus 170 ~r~~d~~~P~~r~vL~Ge~GtGKSiaL~qa~h~a~~~~ 207 (461)
T KOG3928 170 KRLVDPMHPVKRFVLDGEPGTGKSIALAQAVHYAADQK 207 (461)
T ss_pred HHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 64036567635899857998762059999999873178
No 333
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=88.40 E-value=0.69 Score=25.97 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=21.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 799848889967999999999982478
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANA 60 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~ 60 (242)
+.|++.-||||||.+-....+|-.+|.
T Consensus 3 IviEG~dGsGKsT~~~~L~~~L~~~g~ 29 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGY 29 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999899899999999999999997799
No 334
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=88.37 E-value=0.47 Score=27.16 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=16.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 799848889967999999999982
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
+++-+.||||||+-- ...+..|.
T Consensus 4 iIlTGyPgsGKTtfa-keLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFA-KELAKELR 26 (261)
T ss_pred EEEECCCCCCCHHHH-HHHHHHHH
T ss_conf 998269998801789-99999999
No 335
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=88.32 E-value=0.23 Score=29.37 Aligned_cols=29 Identities=31% Similarity=0.210 Sum_probs=22.7
Q ss_pred CCCEEEEECC----CCCHHHHHHHHHHHHHHCC
Q ss_conf 8887998488----8996799999999998247
Q 537021.9.peg.4 31 TRSAWVSANA----GSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 31 ~~~~lV~A~a----GSGKT~tL~~rv~~ll~~g 59 (242)
+.++-|+|-+ |+|||||-++...+|-.+|
T Consensus 101 g~~~~VIav~N~KGGVGKTTtav~LA~~LA~~G 133 (387)
T TIGR03453 101 GEHLQVIAVTNFKGGSGKTTTSAHLAQYLALRG 133 (387)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 998808999788876569999999999999779
No 336
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase; InterPro: IPR011023 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are primarily restricted to the euryarchaeota and proteobacteria respectively; where they are either described as either nucleolar protein or tRNA/rRNA cytosine-C5-methylase. They all have the S-adenosyl methionine (SAM) binding domain and are related to bacterial Fmu (16S rRNA m5C 967 methyltransferase) where the structure of the methyl transferase domain has been determined . In the eukaryota, the majority are annotated as being 'nucleolar protein'. None of the eukaryotic members in this family have a the SAM binding signature. Despite this, the yeast Nop2p is a probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis ; localised to the nucleolus and is essential for viability . Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing . There is substantial identity between Nop2p and human p120 (NOL1), which is also called the proliferation-associated nucleolar antigen , . .
Probab=88.32 E-value=0.11 Score=31.49 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCCEE-EEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78888897323509489999827688879-98488899679999999999824789889566776878999999999
Q 537021.9.peg.4 7 FQEHSETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 (242)
Q Consensus 7 ~~~~~~~~~~~~~~~~qq~~a~~~~~~~l-V~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI 82 (242)
.||.|||+=.+..-.+ -.|+.-|| +-|+|| ||||-|+.+..+ + .-|+|.-+.+.=.+-|.+=|
T Consensus 59 ~q~aSSmiPp~aL~p~-----Gn~~~~vlD~AAaPG-gKTT~is~~m~N---~----G~i~Ane~~ksR~k~L~~NI 122 (284)
T TIGR00446 59 VQEASSMIPPLALEPE-----GNEKERVLDMAAAPG-GKTTQISALMKN---E----GAIVANEVSKSRTKVLIANI 122 (284)
T ss_pred HHHHHHCCCCEEECCC-----CCCCCEEEEEECCCC-CHHHHHHHHHCC---C----CEEEEECCCCCCCHHHHHHH
T ss_conf 9878736760301778-----768887999740889-648999998658---8----51899737634106678655
No 337
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=88.26 E-value=0.58 Score=26.50 Aligned_cols=95 Identities=20% Similarity=0.343 Sum_probs=51.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCC
Q ss_conf 88879984888996799999999998247898895667768789999999999996775216742214649973147999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN 110 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 110 (242)
...-+|-=..|||||-|+..-...++.. ..-..|+.||=-+ ++-+.+..-+..+... ....+.
T Consensus 273 ~~~G~IWHtqGSGKTltm~~~A~~l~~~-~~~~~v~fvvDR~----dLd~Q~~~~f~~~~~~------------~~~~~~ 335 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLARLLLEL-PKNPKVLFVVDRK----DLDDQTSDEFQSFGKV------------AFNDPK 335 (962)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHC-CCCCEEEEEECHH----HHHHHHHHHHHHHHHH------------HHCCCC
T ss_conf 7723898406983789999999999836-5999699996728----8999999999998876------------320444
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 78999999999999831-0013211179999875554
Q 537021.9.peg.4 111 KSDMSKARHLLITILET-PGGLKVQTIHAFCEAIMQQ 146 (242)
Q Consensus 111 ~~~~~~~~~ll~~~l~~-~~~~~i~Ti~~f~~~ilr~ 146 (242)
......+...++. .+++.+.||+.|.......
T Consensus 336 ----~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~ 368 (962)
T COG0610 336 ----AESTSELKELLEDGKGKIIVTTIQKFNKAVKED 368 (962)
T ss_pred ----CCCHHHHHHHHHCCCCCEEEEEECCCCHHHHCC
T ss_conf ----457999999986589848999710264333333
No 338
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=88.22 E-value=0.5 Score=26.96 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=19.1
Q ss_pred CCCC-EEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 6888-799848889967999999999982
Q 537021.9.peg.4 30 PTRS-AWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 30 ~~~~-~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
..|. +-|++.||||||-|.-+ |.+.|.
T Consensus 291 GtG~cLYISGVPGTGKTATV~e-VIr~L~ 318 (650)
T PTZ00112 291 GTGQILYISGVPGTGKTATVYM-VIKELQ 318 (650)
T ss_pred CCCCEEEEECCCCCCCHHHHHH-HHHHHH
T ss_conf 8665699978999980036999-999999
No 339
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=88.07 E-value=0.59 Score=26.49 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=29.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8887998488899679999999999824789889566776878999999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI 82 (242)
-|+-+|+++.|||||+.+.-..+..-. -++.+| +-|=+.-..|+--|.
T Consensus 456 vGHtlIiGpTGsGKTvll~fl~aq~~k--y~~~~v--f~FDKd~s~~i~~~a 503 (818)
T PRK13830 456 VGHTLIFGPTGSGKSTLLALIAAQFRR--YAGAQI--FAFDKGRSMLPLTLA 503 (818)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH--CCCCEE--EEECCCCCHHHHHHH
T ss_conf 650589899999889999999999864--279838--997488768999998
No 340
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.86 E-value=0.25 Score=29.06 Aligned_cols=20 Identities=40% Similarity=0.423 Sum_probs=16.7
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 79984888996799999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVL 53 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~ 53 (242)
-+|+++||||||+.|.+--.
T Consensus 128 y~viG~pgsGKTtal~~sgl 147 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGL 147 (1188)
T ss_pred EEEECCCCCCCCHHHHCCCC
T ss_conf 58854888984008751553
No 341
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=87.63 E-value=0.28 Score=28.76 Aligned_cols=28 Identities=32% Similarity=0.235 Sum_probs=21.6
Q ss_pred CCEEEEECC----CCCHHHHHHHHHHHHHHCC
Q ss_conf 887998488----8996799999999998247
Q 537021.9.peg.4 32 RSAWVSANA----GSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 32 ~~~lV~A~a----GSGKT~tL~~rv~~ll~~g 59 (242)
.++-|+|.+ |+|||||-++...+|-.+|
T Consensus 119 ~~~kVIaVaN~KGGVGKTTtav~LA~~LA~~G 150 (405)
T PRK13869 119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLALQG 150 (405)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99828999788877659999999999999779
No 342
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=87.54 E-value=0.4 Score=27.69 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=17.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 888799848889967999999999982
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
--++|.++|-||||| .|+.-.++.|.
T Consensus 152 KSNILLiGPTGSGKT-LLAqTLA~~L~ 177 (452)
T TIGR00382 152 KSNILLIGPTGSGKT-LLAQTLARILN 177 (452)
T ss_pred CCCEEEECCCCCCHH-HHHHHHHHHCC
T ss_conf 066245468885268-99999998738
No 343
>KOG1970 consensus
Probab=87.42 E-value=0.57 Score=26.60 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=22.6
Q ss_pred HHHHHCCCHHHHHHHCCC-C--CEEEEECCCCCHHHHHHH
Q ss_conf 732350948999982768-8--879984888996799999
Q 537021.9.peg.4 14 IDLISQTKSEQLLASDPT-R--SAWVSANAGSGKTHILVQ 50 (242)
Q Consensus 14 ~~~~~~~~~qq~~a~~~~-~--~~lV~A~aGSGKT~tL~~ 50 (242)
-|+-.|+. |-....|. + -+|+-+++|+|||||+--
T Consensus 92 ~eVk~WL~--~~~~~~~~l~~~iLLltGPsGcGKSTtvkv 129 (634)
T KOG1970 92 SEVKQWLK--QVAEFTPKLGSRILLLTGPSGCGKSTTVKV 129 (634)
T ss_pred HHHHHHHH--HHHHHCCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 99999999--999745366760799857988871319999
No 344
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=87.32 E-value=0.72 Score=25.88 Aligned_cols=77 Identities=18% Similarity=0.212 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 078888897323509489999827688879984888996799999999998--247898895667768789999999999
Q 537021.9.peg.4 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL--LANAHPSTLLCLTHTKAAAAEMSHRVL 83 (242)
Q Consensus 6 ~~~~~~~~~~~~~~~~~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll--~~g~~P~~IL~lTFT~kAA~El~~RI~ 83 (242)
..+|.++..|.+---+-=++.-.-..+.|+..++||||||-. ++.+ ..+||-=.|=.=.|-.--+.-=..|++
T Consensus 158 akeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLL-----AkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVR 232 (596)
T COG0465 158 AKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLL-----AKAVAGEAGVPFFSISGSDFVEMFVGVGASRVR 232 (596)
T ss_pred HHHHHHHHHHHHHCCHHHHHCCCCCCCCEEEECCCCCCCHHH-----HHHHHCCCCCCCEECCCHHHHHHHCCCCCHHHH
T ss_conf 999999999986385566752353456526855999872789-----999845468983530344464431478838889
Q ss_pred HHHH
Q ss_conf 9967
Q 537021.9.peg.4 84 EIIT 87 (242)
Q Consensus 84 ~~l~ 87 (242)
..+.
T Consensus 233 dLF~ 236 (596)
T COG0465 233 DLFE 236 (596)
T ss_pred HHHH
T ss_conf 9999
No 345
>PRK07667 uridine kinase; Provisional
Probab=87.29 E-value=0.84 Score=25.41 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=20.1
Q ss_pred CCCCCE--EEEECCCCCHHHHHHHHHHHHH-HCCC
Q ss_conf 768887--9984888996799999999998-2478
Q 537021.9.peg.4 29 DPTRSA--WVSANAGSGKTHILVQRVLRLL-LANA 60 (242)
Q Consensus 29 ~~~~~~--lV~A~aGSGKT~tL~~rv~~ll-~~g~ 60 (242)
++++.. =|.++.|||||| +++.++..+ ..|+
T Consensus 10 ~~~~r~iIgIaG~sgSGKTT-la~~L~~~l~~~~~ 43 (190)
T PRK07667 10 HKENRFILGIDGLSRSGKTT-FVANLKENMKQEGI 43 (190)
T ss_pred CCCCEEEEEEECCCCCCHHH-HHHHHHHHHHHCCC
T ss_conf 75986999977989788999-99999999866598
No 346
>PRK05595 replicative DNA helicase; Provisional
Probab=87.26 E-value=2.4 Score=22.21 Aligned_cols=101 Identities=10% Similarity=0.173 Sum_probs=51.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHH
Q ss_conf 7998488899679999999999-824789889566776878999999999999677521674221464997314799978
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKS 112 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~l-l~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 112 (242)
++|-|-||.|||....+...+. +.+|. .++.+++ ...+.++..|+......... ..+-....+..
T Consensus 204 iiiaaRP~mGKTa~alnia~~~a~~~g~---~V~~fSl-EMs~~ql~~R~ls~~s~i~~----------~~i~~g~l~~~ 269 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGK---SVVIFSL-EMSKEQLAYKLLCSEANVDM----------LRLRTGNLEDK 269 (444)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC---CEEEEEC-CCCHHHHHHHHHHHHCCCCC----------CCCCCCCCCHH
T ss_conf 9998579898079999999999986699---3799958-89999999999996469884----------42326897999
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999------831001321117999987555428
Q 537021.9.peg.4 113 DMSKARHLLITI------LETPGGLKVQTIHAFCEAIMQQFP 148 (242)
Q Consensus 113 ~~~~~~~ll~~~------l~~~~~~~i~Ti~~f~~~ilr~~~ 148 (242)
.+.+.......+ +.....+.+.+|.+-|.++.+.++
T Consensus 270 ~~~~~~~a~~~l~~~~l~i~d~~~~ti~~i~~~~r~~~~~~~ 311 (444)
T PRK05595 270 DWENIARASGPLAAAKIYIDDTAGVSVMEMRSKCRRLKIEHG 311 (444)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999999999998548970548999648999999999998739
No 347
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=87.24 E-value=0.44 Score=27.34 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=18.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 88879984888996799999999998
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
..|++.++-+|||||++= .+++..+
T Consensus 2 ~~~I~LiG~mGsGKstiG-k~LA~~L 26 (172)
T PRK03731 2 TQPLFLVGPRGCGKTTVG-MALAQAL 26 (172)
T ss_pred CCCEEEECCCCCCHHHHH-HHHHHHH
T ss_conf 998899889999889999-9999985
No 348
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=87.23 E-value=0.63 Score=26.27 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=16.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHH
Q ss_conf 7998488899679999999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRL 55 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~l 55 (242)
|.|.++|||||||.|-..|-+.
T Consensus 72 vavvGPpGtGKsTLirSlVrr~ 93 (1077)
T COG5192 72 VAVVGPPGTGKSTLIRSLVRRF 93 (1077)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9963699887468999999998
No 349
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=87.19 E-value=0.56 Score=26.60 Aligned_cols=51 Identities=24% Similarity=0.300 Sum_probs=30.0
Q ss_pred HHCCCHHHHHHHC----CCCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 3509489999827----6888-7998488899679999999999824789889566
Q 537021.9.peg.4 17 ISQTKSEQLLASD----PTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 (242)
Q Consensus 17 ~~~~~~qq~~a~~----~~~~-~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~ 67 (242)
+++-|.+|+.|.+ ++-+ |-..+.||||||-.-..--++-+.+.-...+|++
T Consensus 226 i~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiV 281 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIV 281 (436)
T ss_pred CCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCEEEE
T ss_conf 57455888888998638777848863357766769999989999987754302788
No 350
>KOG0926 consensus
Probab=87.17 E-value=0.77 Score=25.65 Aligned_cols=65 Identities=23% Similarity=0.221 Sum_probs=39.4
Q ss_pred CHHHHHHHCCC-CC-EEEEECCCCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 48999982768-88-799848889967999999999982478------9889566776878999999999999677
Q 537021.9.peg.4 21 KSEQLLASDPT-RS-AWVSANAGSGKTHILVQRVLRLLLANA------HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 (242)
Q Consensus 21 ~~qq~~a~~~~-~~-~lV~A~aGSGKT~tL~~rv~~ll~~g~------~P~~IL~lTFT~kAA~El~~RI~~~l~~ 88 (242)
-++|++.-.-+ -| |+|-+--||||||-+-.-. -..|. +|+-|-+.-.-|-||-.|..|+..-++.
T Consensus 259 aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFL---YEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~ 331 (1172)
T KOG0926 259 AEEQRIMEAINENPVVIICGETGSGKTTQVPQFL---YEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV 331 (1172)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHH---HHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 7899999986228749995488888644341899---871347766799870540572278999999999998525
No 351
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=87.06 E-value=0.58 Score=26.51 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=17.1
Q ss_pred CCCEEEEECCCCCHHHHHHHH
Q ss_conf 888799848889967999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQR 51 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~r 51 (242)
.++++++++.|+|||+.+-..
T Consensus 1 ~klivl~GPSG~GK~tl~~~L 21 (182)
T pfam00625 1 RRPIVLSGPSGVGKSHIKKAL 21 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHH
T ss_conf 986999898999999999999
No 352
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=87.02 E-value=0.41 Score=27.58 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=16.1
Q ss_pred CCCCEEEEECCCCCHHHHH
Q ss_conf 6888799848889967999
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHIL 48 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL 48 (242)
+.++||-.++||||||.+-
T Consensus 150 APknVLFyGppGTGKTm~A 168 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred CCCEEEEECCCCCCHHHHH
T ss_conf 7541687789996487999
No 353
>PRK13531 regulatory ATPase RavA; Provisional
Probab=87.00 E-value=1 Score=24.80 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=21.1
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 276888799848889967999999999982
Q 537021.9.peg.4 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 28 ~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
+-.+.+++++++|||||+- |+.|+...+.
T Consensus 36 alagehvlllGPPGtAKS~-larrl~~~~~ 64 (498)
T PRK13531 36 ALSGESVFLLGPPGIAKSL-IARRLKFAFQ 64 (498)
T ss_pred HHCCCCEEEECCCCHHHHH-HHHHHHHHHC
T ss_conf 9728946988899513889-9999999855
No 354
>pfam12340 DUF3638 Protein of unknown function (DUF3638). This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=87.00 E-value=2.5 Score=22.11 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=41.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8887998488899679999999999824789889566776878999999999999677
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~ 88 (242)
+.+-+..--=|.|||++|+--++-.+++| ++++.+.+-+.=...+..=+..+++.
T Consensus 41 ~~n~v~QlnMGeGKTsVI~Pmla~~LAdg---~~Lvr~vvp~~Ll~q~~~~L~~~lgg 95 (229)
T pfam12340 41 GSNSVLQLNMGEGKTSVIVPMVAAVLADG---SRLVRVIVPKPLLRQMAQMLQSRLGG 95 (229)
T ss_pred CCCEEEHHHCCCCCCEEEHHHHHHHHCCC---CCEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 88722011206996224378899997488---84589982688999999999998642
No 355
>KOG0987 consensus
Probab=86.96 E-value=0.41 Score=27.57 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHCCCHHHH--------HHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 7888889732350948999--------98276888799848889967999999999982478988956677687899999
Q 537021.9.peg.4 7 FQEHSETIDLISQTKSEQL--------LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 (242)
Q Consensus 7 ~~~~~~~~~~~~~~~~qq~--------~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El 78 (242)
.+.|.+....+ +.+|+ .+.+..|+++-.+.+|||||+.+-.-+.-+-.+| ...++++.+..|+.=.
T Consensus 108 ~~~~~~~~~~l---~~eqk~v~d~~~~~v~~~~g~~ff~g~~gtgKt~l~~t~~~~~~~~g---~~~~~v~~s~ia~~~l 181 (540)
T KOG0987 108 KEKHAELPKKL---TPEQKRVYDAILEAVENNLGGVFFYGFGGTGKTYLLKTLIAALRSRG---KIVLNVASSGIAALLL 181 (540)
T ss_pred HHHHHHHHHHC---CHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEHHHHHHHHHHCC---CCEEEEEECCHHHHHC
T ss_conf 55310236655---98776379999999854787653436788654023788999997458---7146653301244315
Q ss_pred H
Q ss_conf 9
Q 537021.9.peg.4 79 S 79 (242)
Q Consensus 79 ~ 79 (242)
.
T Consensus 182 ~ 182 (540)
T KOG0987 182 E 182 (540)
T ss_pred C
T ss_conf 6
No 356
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=86.94 E-value=0.41 Score=27.57 Aligned_cols=31 Identities=26% Similarity=0.215 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 8879984888996799999999998247898
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP 62 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P 62 (242)
.-++|.+.+|+|||+.+...+.+...++.+|
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~ 36 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPP 36 (219)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 7999999999988999999964767655676
No 357
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=86.89 E-value=0.78 Score=25.60 Aligned_cols=55 Identities=20% Similarity=0.325 Sum_probs=38.5
Q ss_pred HHCCCHHHHHHHC----C--CCC--EEEEECCCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHH
Q ss_conf 3509489999827----6--888--79984888996799999999998247-----898895667768
Q 537021.9.peg.4 17 ISQTKSEQLLASD----P--TRS--AWVSANAGSGKTHILVQRVLRLLLAN-----AHPSTLLCLTHT 71 (242)
Q Consensus 17 ~~~~~~qq~~a~~----~--~~~--~lV~A~aGSGKT~tL~~rv~~ll~~g-----~~P~~IL~lTFT 71 (242)
-+.|++|++++.+ . +.| -|+.+--|||||-+...-....+..| ..|.+||+--.-
T Consensus 256 F~LT~~Q~~~~~ei~~dl~~~~~m~rllqGDVGsGKT~va~~a~~~~~~~g~q~a~maPTeiLa~Qh~ 323 (677)
T PRK10917 256 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHY 323 (677)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHH
T ss_conf 98898899999999987659954277732876788899999999999981994899876799999999
No 358
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=86.87 E-value=0.97 Score=24.94 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=25.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 88879984888996799999999998247
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
.++++|.+.+||||++.|-..+..++...
T Consensus 530 ~~hlli~G~tgsGKSv~lnt~i~Sll~~~ 558 (858)
T COG1674 530 AGHLLIAGATGSGKSVALNTMILSLLYTH 558 (858)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 88878824888651558999999987518
No 359
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=86.84 E-value=0.44 Score=27.36 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=19.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 888799848889967999999999982
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
.+++++++.||||||++= ..++..+.
T Consensus 4 kknI~LiG~mGsGKstvg-k~LA~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIG-RQLAQQLN 29 (172)
T ss_pred CCCEEEECCCCCCHHHHH-HHHHHHHC
T ss_conf 882898899999889999-99999969
No 360
>KOG0729 consensus
Probab=86.79 E-value=0.39 Score=27.77 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=20.3
Q ss_pred CCHHHHHH--HCCCCCEEEEECCCCCHHH
Q ss_conf 94899998--2768887998488899679
Q 537021.9.peg.4 20 TKSEQLLA--SDPTRSAWVSANAGSGKTH 46 (242)
Q Consensus 20 ~~~qq~~a--~~~~~~~lV~A~aGSGKT~ 46 (242)
++++.-.. .+|.+.+|..++||||||-
T Consensus 198 L~PErfv~LGIdPPKGvllyGPPGtGKTL 226 (435)
T KOG0729 198 LHPERFVNLGIDPPKGVLLYGPPGTGKTL 226 (435)
T ss_pred CCHHHHHHCCCCCCCCEEEECCCCCCHHH
T ss_conf 58888875278998733786899986108
No 361
>KOG0331 consensus
Probab=86.73 E-value=0.48 Score=27.08 Aligned_cols=59 Identities=22% Similarity=0.240 Sum_probs=37.3
Q ss_pred CCCCCEEEEECCCCCHHHHHH-HHHHHHHH-CC--CC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 768887998488899679999-99999982-47--89--889566776878999999999999677521
Q 537021.9.peg.4 29 DPTRSAWVSANAGSGKTHILV-QRVLRLLL-AN--AH--PSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 (242)
Q Consensus 29 ~~~~~~lV~A~aGSGKT~tL~-~rv~~ll~-~g--~~--P~~IL~lTFT~kAA~El~~RI~~~l~~~~~ 91 (242)
--++.++.+|--|||||..-. --+.++.. .+ -. --.+|++++|| |+...|..-+.++..
T Consensus 126 l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTR----ELA~QV~~~~~~~~~ 190 (519)
T KOG0331 126 LSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTR----ELAVQVQAEAREFGK 190 (519)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCH----HHHHHHHHHHHHHCC
T ss_conf 26886577823578620555557999987004443479998699976859----999999999999707
No 362
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=86.69 E-value=0.41 Score=27.61 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=19.4
Q ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 9827688879984888996799999999998
Q 537021.9.peg.4 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 26 ~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
....|...+|..+|||||||- |+.-+++-+
T Consensus 235 lGiePPkG~ll~GPPGtGktl-laka~ane~ 264 (980)
T TIGR01243 235 LGIEPPKGVLLYGPPGTGKTL-LAKAVANEA 264 (980)
T ss_pred CCCCCCCCEEEECCCCCCHHH-HHHHHHHHC
T ss_conf 188998735875589861789-999987530
No 363
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=86.66 E-value=1.6 Score=23.41 Aligned_cols=61 Identities=15% Similarity=0.251 Sum_probs=39.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHHH-----HHHHHHHHHHHHHHHHCC
Q ss_conf 888799848889967999999999982478988-----95667768789-----999999999996775216
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHTKAA-----AAEMSHRVLEIITAWSHL 92 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~-----~IL~lTFT~kA-----A~El~~RI~~~l~~~~~~ 92 (242)
.-+.+.++-||.|||... +-++..|.+|--|+ +|+.+--..-- -.|+.+|+...+.+....
T Consensus 207 KNNpiLvGepGVGKTAIv-EGLA~rI~~g~VP~~L~~~~i~~Ldl~~LiAGtkyRGefEeRlk~vi~e~~~~ 277 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA-EGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD 277 (758)
T ss_pred CCCCEEECCCCCCHHHHH-HHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 589602169998699999-99999997389976558988998458778616864154999999999999857
No 364
>PRK00698 tmk thymidylate kinase; Validated
Probab=86.65 E-value=1 Score=24.76 Aligned_cols=29 Identities=17% Similarity=0.093 Sum_probs=22.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 87998488899679999999999824789
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLLANAH 61 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~~g~~ 61 (242)
=+.+++.-||||||..-....+|-.+|.+
T Consensus 5 fIviEGiDGsGKsTq~~~L~~~L~~~g~~ 33 (204)
T PRK00698 5 FITIEGIDGAGKSTQIELLAERLEEQGRD 33 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99998899998999999999999967997
No 365
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=86.61 E-value=2.6 Score=21.97 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=17.4
Q ss_pred EEEEECCCCCHHHHHHHHHH-HHHHC
Q ss_conf 79984888996799999999-99824
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVL-RLLLA 58 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~-~ll~~ 58 (242)
.|..+++|+|||++- .+++ +++.+
T Consensus 48 ~Lf~GP~GiGKaTlA-~~~A~~Ll~~ 72 (352)
T PRK09112 48 LLFEGPEGIGKATLA-FHLANHILSH 72 (352)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHHCC
T ss_conf 653589980899999-9999998669
No 366
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=86.61 E-value=1.5 Score=23.71 Aligned_cols=34 Identities=9% Similarity=0.089 Sum_probs=24.0
Q ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9827688879984888996799999999998247
Q 537021.9.peg.4 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 26 ~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
+-......+||.++||+||||--..-.-++..+|
T Consensus 258 RL~eraeGILIAG~PGaGKsTFaqAlAefy~~~G 291 (604)
T COG1855 258 RLEERAEGILIAGAPGAGKSTFAQALAEFYASQG 291 (604)
T ss_pred HHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9886416469956999974689999999998669
No 367
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=86.60 E-value=1.1 Score=24.70 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=21.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 799848889967999999999982478
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANA 60 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~ 60 (242)
+-|.+--||||||.+...+..|-.+|.
T Consensus 4 i~ivG~snSGKTTLi~kli~~l~~~G~ 30 (159)
T cd03116 4 IGFVGYSGSGKTTLLEKLIPALSARGL 30 (159)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999967999999999999999997798
No 368
>pfam02689 Herpes_Helicase Helicase. This family consists of Helicases from the Herpes viruses. Helicases are responsible for the unwinding of DNA and are essential for replication and completion of the viral life cycle.
Probab=86.57 E-value=1.1 Score=24.44 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=33.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7998488899679999999999--824789889566776878999999999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRL--LLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~l--l~~g~~P~~IL~lTFT~kAA~El~~RI~~~ 85 (242)
.||-+-||+|||+.+......| |-.| =|+-||+++...+...
T Consensus 63 ylITGtAGaGKSTsIq~L~~~LdCvITG----------aT~VAAQNls~~L~~~ 106 (801)
T pfam02689 63 YLITGTAGAGKSTSIQTLNENLDCLITG----------ATRVAAQNLSAKLSRA 106 (801)
T ss_pred EEEECCCCCCCHHHHHHHHHHCCEEEEC----------CHHHHHHHHHHHHHHC
T ss_conf 9995378887051899999753928956----------1589988999986213
No 369
>KOG0730 consensus
Probab=86.55 E-value=0.61 Score=26.35 Aligned_cols=19 Identities=32% Similarity=0.625 Sum_probs=12.5
Q ss_pred CCCCEEEEECCCCCHHHHH
Q ss_conf 6888799848889967999
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHIL 48 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL 48 (242)
|.+.+|..++||+|||...
T Consensus 217 ~prg~Ll~gppg~Gkt~l~ 235 (693)
T KOG0730 217 PPRGLLLYGPPGTGKTFLV 235 (693)
T ss_pred CCCCCCCCCCCCCCHHHHH
T ss_conf 9987444389999818999
No 370
>pfam00406 ADK Adenylate kinase.
Probab=86.52 E-value=0.52 Score=26.83 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=17.8
Q ss_pred EEECCCCCHHHHHHHHHHHHH-HCCCCHHHHHH
Q ss_conf 984888996799999999998-24789889566
Q 537021.9.peg.4 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 (242)
Q Consensus 36 V~A~aGSGKT~tL~~rv~~ll-~~g~~P~~IL~ 67 (242)
+.++|||||+|.- .+++.-. ..-+....+|-
T Consensus 1 i~G~PGsGKgTqa-~~La~~~~~~~is~GdllR 32 (186)
T pfam00406 1 LLGPPGAGKGTQA-ERIVQKYGIVHLSTGDLLR 32 (186)
T ss_pred CCCCCCCCHHHHH-HHHHHHHCCEEECHHHHHH
T ss_conf 9188989859999-9999985990676999999
No 371
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=86.37 E-value=0.86 Score=25.32 Aligned_cols=48 Identities=15% Similarity=0.159 Sum_probs=29.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8887998488899679999999999824789889566776878999999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI 82 (242)
-|+-+|+++.|||||+.|.-..+.... -++.+| +-|=+....++--|.
T Consensus 441 vGHtlI~GpTGsGKTvll~~l~~q~~r--y~~~~v--f~FDkd~s~~i~~~a 488 (815)
T PRK13873 441 VGHTLVVGPTGAGKSVLLALMALQFRR--YPGSQV--FAFDFGGSIRAAALA 488 (815)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHH--CCCCCE--EEEECCCCHHHHHHH
T ss_conf 764389788999899999999999864--489848--999789878999998
No 372
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=86.36 E-value=0.94 Score=25.04 Aligned_cols=27 Identities=33% Similarity=0.305 Sum_probs=18.5
Q ss_pred CEEEEECC--CCCHHHHHHHHHHHHHHCC
Q ss_conf 87998488--8996799999999998247
Q 537021.9.peg.4 33 SAWVSANA--GSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 33 ~~lV~A~a--GSGKT~tL~~rv~~ll~~g 59 (242)
+.+|+||+ |+||||+=......|..+|
T Consensus 1 ~~vvIAg~~SG~GKTTvT~glm~aL~~rg 29 (451)
T COG1797 1 PAVVIAGTSSGSGKTTVTLGLMRALRRRG 29 (451)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 93599548888858999999999998668
No 373
>PRK13947 shikimate kinase; Provisional
Probab=86.32 E-value=0.49 Score=27.01 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=18.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 88799848889967999999999982
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
++++.++-|||||||+= .+++..+.
T Consensus 2 knI~LiG~mGsGKTtiG-k~La~~L~ 26 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVG-KKVATTLS 26 (171)
T ss_pred CCEEEECCCCCCHHHHH-HHHHHHHC
T ss_conf 85899799999889999-99999979
No 374
>KOG0780 consensus
Probab=86.26 E-value=0.41 Score=27.59 Aligned_cols=48 Identities=15% Similarity=0.059 Sum_probs=39.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799848889967999999999982478988956677687899999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~R 81 (242)
++..+--|+|||||.+....|+=.+|.+|-=|.+=||--.|-..++--
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqn 151 (483)
T KOG0780 104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQN 151 (483)
T ss_pred EEEEECCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 999830578863008999999984687245776022453068999987
No 375
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=86.26 E-value=0.43 Score=27.40 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=36.2
Q ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC---CCHHHHHH--HHHHHHHHHHHHHHHHHH
Q ss_conf 99827688879984888996799999999998247---89889566--776878999999999999
Q 537021.9.peg.4 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLC--LTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 25 ~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g---~~P~~IL~--lTFT~kAA~El~~RI~~~ 85 (242)
+....|.+.+|..+|||||||- |+.-++.--... +.--+|+. +--+.++..++-.|-+..
T Consensus 569 k~G~~PP~Gvll~GPPGtGktl-lakava~es~anfi~v~GPe~lskWvGese~~ir~if~~arq~ 633 (980)
T TIGR01243 569 KLGIRPPKGVLLFGPPGTGKTL-LAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQA 633 (980)
T ss_pred HCCCCCCCCEEEECCCCCCHHH-HHHHHHHCCCCCEEEECCCHHHHHHHCHHHHHHHHHHHHHHHC
T ss_conf 6078899734874689861688-8887740145646774073122344032479999999986412
No 376
>KOG0652 consensus
Probab=86.24 E-value=0.45 Score=27.32 Aligned_cols=100 Identities=14% Similarity=0.179 Sum_probs=45.0
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 276888799848889967999999999982478---98895667768789999999999996775216742214649973
Q 537021.9.peg.4 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKI 104 (242)
Q Consensus 28 ~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~---~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~~~~~~~l~~~ 104 (242)
..|.+.||..++||||||-. .|.+..-.+-. -..--|+-.|--..|.=.++-..-.-. ..+-.-+-..+-.+
T Consensus 202 i~pPKGvLmYGPPGTGKTlm--ARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKE---kaP~IIFIDElDAI 276 (424)
T KOG0652 202 IRPPKGVLMYGPPGTGKTLM--ARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKE---KAPTIIFIDELDAI 276 (424)
T ss_pred CCCCCCEEEECCCCCCHHHH--HHHHHHHCCCHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHC---CCCEEEEEECHHHH
T ss_conf 88997227657999757799--99998740106887326477766533418899999987533---49838997300232
Q ss_pred HCCCCCHHHH--HHHHHHHHHHHHHHHHHH
Q ss_conf 1479997899--999999999983100132
Q 537021.9.peg.4 105 QGKKPNKSDM--SKARHLLITILETPGGLK 132 (242)
Q Consensus 105 ~~~~~~~~~~--~~~~~ll~~~l~~~~~~~ 132 (242)
....++.... .+.++....++.+.+++.
T Consensus 277 GtKRfDSek~GDREVQRTMLELLNQLDGFs 306 (424)
T KOG0652 277 GTKRFDSEKAGDREVQRTMLELLNQLDGFS 306 (424)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 334365312343899999999998604899
No 377
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family; InterPro: IPR004346 This family includes the Helicobacter pylori protein CagE (see examples), which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration . Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro . Similar type IV transport systems are also found in other bacteria. This family includes proteins from the trb and Vir conjugal transfer systems in Agrobacterium tumefaciens and homologues of VirB proteins from other species.; GO: 0005524 ATP binding.
Probab=86.23 E-value=0.9 Score=25.18 Aligned_cols=52 Identities=21% Similarity=0.191 Sum_probs=34.2
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 276888799848889967999999999982-478988956677687899999999
Q 537021.9.peg.4 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHR 81 (242)
Q Consensus 28 ~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~R 81 (242)
.-..|+.+|.++-|||||+.|.=..+.+-. .+-.| +-++-|-|.--.|.--|
T Consensus 513 ~r~~GhT~IfG~~G~GKTtLl~fL~a~~~ky~~~~a--~~~~~fDkd~g~~~~~~ 565 (931)
T TIGR00929 513 KRVLGHTLIFGPTGSGKTTLLNFLLAQLQKYKPNFA--LTIFAFDKDRGMEIFIR 565 (931)
T ss_pred HHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCC--EEEEEEECCCCCHHHHE
T ss_conf 110387778888898469999999999742488987--06999887898210411
No 378
>KOG3347 consensus
Probab=86.21 E-value=0.42 Score=27.47 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=17.9
Q ss_pred CC-EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 88-79984888996799999999998
Q 537021.9.peg.4 32 RS-AWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 32 ~~-~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
+| +||-+.||+||||+- .+++...
T Consensus 7 ~PNILvtGTPG~GKstl~-~~lae~~ 31 (176)
T KOG3347 7 RPNILVTGTPGTGKSTLA-ERLAEKT 31 (176)
T ss_pred CCCEEEECCCCCCCHHHH-HHHHHHH
T ss_conf 788798679998802599-9999973
No 379
>pfam05872 DUF853 Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. One member from Brucella melitensis is thought to be an ATPase.
Probab=86.18 E-value=0.8 Score=25.55 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=35.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7688879984888996799999999998247898------89566776878999999999999
Q 537021.9.peg.4 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP------STLLCLTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 29 ~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P------~~IL~lTFT~kAA~El~~RI~~~ 85 (242)
..+++-||-+.-|||||.||--....+=..||+. ..+-.++-.-....-+.+|+.+.
T Consensus 19 ~~NRHGLiaGATGTGKTvTLq~lAE~~S~~GVPvf~aDvKGDLsGia~~G~~~~kl~~R~~~~ 81 (504)
T pfam05872 19 MANRHGLIAGATGTGKTVTLQVLAESFSDAGVPVFLADVKGDLSGIAAPGEPQDKLAARAASI 81 (504)
T ss_pred HCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCCCHHHHHHHHHC
T ss_conf 605216622657786178999999987454993887105661432168899975799999971
No 380
>PRK07429 phosphoribulokinase; Provisional
Probab=86.13 E-value=1 Score=24.81 Aligned_cols=28 Identities=29% Similarity=0.547 Sum_probs=21.0
Q ss_pred CCCCCEE--EEECCCCCHHHHHHHHHHHHHH
Q ss_conf 7688879--9848889967999999999982
Q 537021.9.peg.4 29 DPTRSAW--VSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 29 ~~~~~~l--V~A~aGSGKT~tL~~rv~~ll~ 57 (242)
.+.+|++ |-+|-|||||| ++.++...+.
T Consensus 4 m~~rP~IIGIAGgSGSGKTT-v~r~I~~~fg 33 (331)
T PRK07429 4 MPDRPVIIGVAGDSGCGKST-FLRRLADLFG 33 (331)
T ss_pred CCCCCEEEEEECCCCCCHHH-HHHHHHHHHC
T ss_conf 99999899985788778999-9999999838
No 381
>KOG2228 consensus
Probab=86.06 E-value=0.84 Score=25.39 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=22.8
Q ss_pred HHC-CCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 827-6888799848889967999999999
Q 537021.9.peg.4 27 ASD-PTRSAWVSANAGSGKTHILVQRVLR 54 (242)
Q Consensus 27 a~~-~~~~~lV~A~aGSGKT~tL~~rv~~ 54 (242)
|.+ ..-+|+++++.|||||..+..+...
T Consensus 44 ~~~gEsnsviiigprgsgkT~li~~~Ls~ 72 (408)
T KOG2228 44 ILHGESNSVIIIGPRGSGKTILIDTRLSD 72 (408)
T ss_pred HHHCCCCCEEEECCCCCCCEEEEHHHHHH
T ss_conf 98447772699814778816740778766
No 382
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=86.00 E-value=0.52 Score=26.86 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=18.3
Q ss_pred CCCC-EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 6888-79984888996799999999998
Q 537021.9.peg.4 30 PTRS-AWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 30 ~~~~-~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
..|. +.+++|-||||||+| .-++-+.
T Consensus 29 ~~Gef~tlLGPSGcGKTTlL-R~IAGfe 55 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLL-RMIAGFE 55 (352)
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHHCCC
T ss_conf 48868999899888889999-9996777
No 383
>PRK08694 consensus
Probab=85.98 E-value=2.8 Score=21.75 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=34.1
Q ss_pred CCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf 888-79984888996799999999998247898895667768-7899999999999967
Q 537021.9.peg.4 31 TRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT-KAAAAEMSHRVLEIIT 87 (242)
Q Consensus 31 ~~~-~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT-~kAA~El~~RI~~~l~ 87 (242)
.|. ++|-|-||.|||....+-..+...+|-.| ++=|| ...+.++..|+....+
T Consensus 217 ~G~LiVIaaRPsmGKTalalnia~~~a~~~~~~----V~~fSLEMs~~~l~~Rlla~~s 271 (468)
T PRK08694 217 PGDLIIVAGRPSMGKTAFSINIAEHVAVEGKLP----VAVFSMEMGGAQLVMRMLGSVG 271 (468)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCC----EEEECCCCCHHHHHHHHHHHHC
T ss_conf 784799961786537899999999999847984----7997788999999999999725
No 384
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=85.93 E-value=0.5 Score=27.00 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=13.1
Q ss_pred EEEEECCCCCHHHHH
Q ss_conf 799848889967999
Q 537021.9.peg.4 34 AWVSANAGSGKTHIL 48 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL 48 (242)
+-|-+++|||||++.
T Consensus 2 igiTG~igSGKStv~ 16 (179)
T cd02022 2 IGLTGGIGSGKSTVA 16 (179)
T ss_pred EEEECCCCCCHHHHH
T ss_conf 886378757899999
No 385
>pfam04665 Pox_A32 Poxvirus A32 protein. The A32 protein is thought to be involved in viral DNA packaging.
Probab=85.81 E-value=0.95 Score=25.01 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=28.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHC----------------C-CCHHHHHHHHHHHH
Q ss_conf 87998488899679999999999824----------------7-89889566776878
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLLA----------------N-AHPSTLLCLTHTKA 73 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~~----------------g-~~P~~IL~lTFT~k 73 (242)
...++||-|||||+-|....-.++.. | +=|++|--+|=.++
T Consensus 15 rmaivGgSGSGKT~yLlsLf~tlv~kykhIfLfTpv~N~~Yd~YVwPdHV~~vtt~ee 72 (241)
T pfam04665 15 RMAIVGGSGSGKTTYLLSLLRTLVRKFKHIFLFTPVYNNAYDGYVWPDHIFKVTTNEE 72 (241)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCCEEEECCHHH
T ss_conf 5999815887566999999999977415899962446732365257773256257235
No 386
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=85.77 E-value=0.72 Score=25.85 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=15.5
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 79984888996799999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVL 53 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~ 53 (242)
++|++.+|+|||+.+ +|++
T Consensus 2 i~vvG~~~vGKTsli-~r~~ 20 (162)
T pfam00071 2 LVLVGDGGVGKSSLL-IRFT 20 (162)
T ss_pred EEEECCCCCCHHHHH-HHHH
T ss_conf 899997997799999-9996
No 387
>pfam07088 GvpD GvpD gas vesicle protein. This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation.
Probab=85.73 E-value=0.39 Score=27.77 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=28.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHHHH
Q ss_conf 768887998488899679999999999824---------7898895667768789999
Q 537021.9.peg.4 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLA---------NAHPSTLLCLTHTKAAAAE 77 (242)
Q Consensus 29 ~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~---------g~~P~~IL~lTFT~kAA~E 77 (242)
+++..+||.+-||||||.- +-+.+.-+.+ .+.++.|.-.=|-.+.+-+
T Consensus 8 ~~G~tLlIkG~PGTGKTlf-Tl~~Ld~l~~~~~vlYvStRvdqd~V~e~yf~~~~~~~ 64 (484)
T pfam07088 8 DFGKTLLINGAPGTGKTLF-TIRGLDVLRRHHDVLYVSTRVDQETVHEMYFEGHGSLD 64 (484)
T ss_pred CCCCEEEEECCCCCCCEEE-EEEHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCC
T ss_conf 9984799936999872389-85737788516976999632377888774020025557
No 388
>PRK08233 hypothetical protein; Provisional
Probab=85.69 E-value=0.77 Score=25.65 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=15.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 79984888996799999999998
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
+-|.+|.|||||+.. +.+...+
T Consensus 6 IgIaGgSgSGKTtla-~~l~~~l 27 (182)
T PRK08233 6 ITIAAVSGGGKTTLT-ERLTHKL 27 (182)
T ss_pred EEEECCCCCCHHHHH-HHHHHHC
T ss_conf 999688867899999-9999974
No 389
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=85.66 E-value=1 Score=24.73 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 88879984888996799999999998247
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
..+.+|.+.+|||||+.|-..+-..-.+|
T Consensus 185 ~qH~li~GTtGtGKS~~ir~LL~qIR~RG 213 (732)
T PRK13700 185 IQNFCLHGTVGAGKSEVIRRLANYARQRG 213 (732)
T ss_pred HHEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 31267746888889999999999999729
No 390
>PRK13973 thymidylate kinase; Provisional
Probab=85.50 E-value=1.3 Score=24.15 Aligned_cols=28 Identities=21% Similarity=0.172 Sum_probs=22.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 7998488899679999999999824789
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANAH 61 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~ 61 (242)
+++++.-||||||.+-....+|..+|.+
T Consensus 6 Iv~EGiDGsGKsTq~~~L~~~L~~~g~~ 33 (216)
T PRK13973 6 ITFEGGEGAGKSTQIRLLAERLRAAGYD 33 (216)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9988999998999999999999977995
No 391
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=85.47 E-value=0.7 Score=25.93 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=20.8
Q ss_pred HHHHHHHCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 89999827688879984888996799999999
Q 537021.9.peg.4 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVL 53 (242)
Q Consensus 22 ~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~ 53 (242)
+|-..-...+.|+|.++-.|||||+++-....
T Consensus 455 eql~~~Iq~nep~LLVGeTGtGKTT~IQ~La~ 486 (4600)
T COG5271 455 EQLLWNIQNNEPTLLVGETGTGKTTMIQYLAL 486 (4600)
T ss_pred HHHHHHHCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 99987741698458871488765469999999
No 392
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics..
Probab=85.43 E-value=0.51 Score=26.88 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=30.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7688879984888996799999999998247898895667768789999999999
Q 537021.9.peg.4 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 (242)
Q Consensus 29 ~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~ 83 (242)
.|+.=++|++.||||+||-|-.-....-. -.-..=-.+++.--.-+||+.+.+
T Consensus 86 ~PGEl~vVLGrPGaGCsTlLk~ia~~t~g--f~~~~~g~i~YdG~~~~ei~k~yr 138 (1466)
T TIGR00956 86 KPGELTVVLGRPGAGCSTLLKTIASKTDG--FHIGVEGVITYDGITPEEIKKHYR 138 (1466)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHEEE--EECCCCCEEEECCCCHHHHHCCCC
T ss_conf 67617997248997356655565320001--431576448746888465411477
No 393
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=85.39 E-value=0.78 Score=25.61 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=15.3
Q ss_pred CE-EEEECCCCCHHHHHHHHHH
Q ss_conf 87-9984888996799999999
Q 537021.9.peg.4 33 SA-WVSANAGSGKTHILVQRVL 53 (242)
Q Consensus 33 ~~-lV~A~aGSGKT~tL~~rv~ 53 (242)
|+ +|-+-.||||||.|-+-+.
T Consensus 1 Pv~iitGFLGsGKTTll~~ll~ 22 (174)
T pfam02492 1 PVTVLTGFLGSGKTTLLEHLLR 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 9699934887889999999998
No 394
>KOG0332 consensus
Probab=85.35 E-value=0.41 Score=27.58 Aligned_cols=58 Identities=22% Similarity=0.382 Sum_probs=42.3
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2768887998488899679999999999824789889566776878999999999999
Q 537021.9.peg.4 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 28 ~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~ 85 (242)
..|..+++-.+--|||||..-+.-.+-.+.-.+..-+-+|+.+|+.-|.-|-+-+.+.
T Consensus 126 ~~Pp~nlIaQsqsGtGKTaaFvL~MLsRvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eM 183 (477)
T KOG0332 126 AEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEM 183 (477)
T ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHH
T ss_conf 5982656655017886058999999873483335877405476177799898999984
No 395
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=85.33 E-value=0.93 Score=25.06 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=20.8
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 76888799848889967999999999982
Q 537021.9.peg.4 29 DPTRSAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 29 ~~~~~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
.+..++|..++||.|||| |++-+++-+.
T Consensus 49 e~ldH~Ll~GPPGlGKTT-LA~iiA~E~~ 76 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTT-LANIIANEMG 76 (328)
T ss_pred CCCCCEEEECCCCCCHHH-HHHHHHHHHC
T ss_conf 998805765889988999-9999999868
No 396
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=85.22 E-value=0.58 Score=26.50 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=14.9
Q ss_pred EEEEECCCCCHHHHHHHHHHH
Q ss_conf 799848889967999999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLR 54 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ 54 (242)
++|-+.+||||||+=.....+
T Consensus 2 iiv~GvsGsGKSTia~~La~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 899918999999999999997
No 397
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=85.14 E-value=0.89 Score=25.20 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=18.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 8799848889967999999999982
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
.+|+.++||+|||++.-.....+..
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 1003799999789999999999658
No 398
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=85.12 E-value=0.67 Score=26.07 Aligned_cols=69 Identities=20% Similarity=0.293 Sum_probs=42.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHH--CCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 6888799848889967999999999982--4789889566--7768789999999999996775216742214649973
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLC--LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKI 104 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~--~g~~P~~IL~--lTFT~kAA~El~~RI~~~l~~~~~~~~~~~~~~l~~~ 104 (242)
|+..+-|.++=||||||.| .-+..++. +| +|.. +..+.-.-.|++.||. .+.+.++.+..+..+.+.--
T Consensus 386 ~G~r~Ai~G~SG~GKsTLL-~~L~G~l~P~~G----~vtl~G~~~~~~~~~evrr~v~-~~aQ~aHlF~ttvr~NLrla 458 (566)
T TIGR02868 386 PGERVAILGPSGSGKSTLL-ATLAGLLDPLQG----EVTLDGVPVSSLSEDEVRRRVS-VFAQDAHLFDTTVRENLRLA 458 (566)
T ss_pred CCCCEEEECCCCCCHHHHH-HHHHHHCCCCCC----CEEECCCCHHHCCCCHHEHHEE-ECCCCCCCCCCCHHHHHHHC
T ss_conf 8860898668876578999-999840289999----1787773243257311000003-12788621105478788731
No 399
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=85.07 E-value=0.33 Score=28.24 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=13.4
Q ss_pred EEECCCCCHHHHHHHHHHHH
Q ss_conf 98488899679999999999
Q 537021.9.peg.4 36 VSANAGSGKTHILVQRVLRL 55 (242)
Q Consensus 36 V~A~aGSGKT~tL~~rv~~l 55 (242)
++++-||||||+|= -++-+
T Consensus 1 LLGpSGcGKTTlLr-lLAGf 19 (331)
T TIGR01187 1 LLGPSGCGKTTLLR-LLAGF 19 (331)
T ss_pred CCCCCCCCHHHHHH-HHHCC
T ss_conf 97888874799999-98345
No 400
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006417 The NadR protein of Escherichia coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal region is a DNA-binding helix-turn-helix domain (IPR001387 from INTERPRO) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this family share that activity. ; GO: 0003677 DNA binding, 0030528 transcription regulator activity, 0006810 transport, 0019363 pyridine nucleotide biosynthetic process, 0045449 regulation of transcription.
Probab=85.06 E-value=1.2 Score=24.27 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=31.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8879984888996799999999998247898895667768789999
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~E 77 (242)
+-|-|++|+-|||| |||++++..+-..-.||.=--.-|.+..-.|
T Consensus 176 k~V~ilG~eStGKs-tLv~~lA~~~nt~~~~Eyar~y~e~~~ggDe 220 (346)
T TIGR01526 176 KTVAILGGESTGKS-TLVNKLAEKLNTTSAWEYAREYVEAKLGGDE 220 (346)
T ss_pred EEEEEECCCCCCHH-HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCH
T ss_conf 58888558886368-9999999984688712565566665168721
No 401
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=84.98 E-value=0.94 Score=25.06 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=24.4
Q ss_pred CHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 489999827688879984888996799999999998
Q 537021.9.peg.4 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 21 ~~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
-++-..++..+.||||.+-+||||+.. .|..|..
T Consensus 151 ~~~i~~~a~~~~pVLI~GE~GTGK~~~--Ar~IH~~ 184 (469)
T PRK10923 151 FRIIGRLSRSSISVLINGESGTGKELV--AHALHRH 184 (469)
T ss_pred HHHHHHHHCCCCCEEEECCCCCCHHHH--HHHHHHC
T ss_conf 999999858899789989898269999--9999974
No 402
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=84.94 E-value=0.61 Score=26.34 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=12.7
Q ss_pred EEEEECCCCCHHHHH
Q ss_conf 799848889967999
Q 537021.9.peg.4 34 AWVSANAGSGKTHIL 48 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL 48 (242)
+-|-++|||||||+.
T Consensus 5 IglTG~igsGKStva 19 (201)
T COG0237 5 IGLTGGIGSGKSTVA 19 (201)
T ss_pred EEEECCCCCCHHHHH
T ss_conf 999578877889999
No 403
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=84.84 E-value=1.4 Score=23.93 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=17.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 79984888996799999999998247
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
+++.+-|||||||.--....++-..|
T Consensus 2 ivl~GlP~SGKSt~a~~L~~~l~~~~ 27 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELSKKLSEKN 27 (249)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHC
T ss_conf 78967899989999999999999829
No 404
>PRK13948 shikimate kinase; Provisional
Probab=84.83 E-value=0.7 Score=25.97 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=18.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 6888799848889967999999999982
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
|...++.++-+|||||++= ..++..+.
T Consensus 9 ~~~~IvLIG~mGsGKStiG-k~LA~~l~ 35 (182)
T PRK13948 9 PATFVALAGFMGTGKSRIG-WELSRALA 35 (182)
T ss_pred CCCCEEEECCCCCCHHHHH-HHHHHHHC
T ss_conf 9981898899999889999-99999969
No 405
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=84.78 E-value=1.1 Score=24.55 Aligned_cols=25 Identities=32% Similarity=0.225 Sum_probs=14.8
Q ss_pred EEEECC--CCCHHHHHHHHHHHHHHCC
Q ss_conf 998488--8996799999999998247
Q 537021.9.peg.4 35 WVSANA--GSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 35 lV~A~a--GSGKT~tL~~rv~~ll~~g 59 (242)
+|+|+| |||||++-+.....|-.+|
T Consensus 4 ilIAa~~SgsGKTtvt~gL~~aL~~rG 30 (432)
T PRK13896 4 VVLAGTSSGVGKTVATLAVLQALADAG 30 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 899778999989999999999999784
No 406
>TIGR01618 phage_P_loop phage nucleotide-binding protein; InterPro: IPR006505 These sequences represent an uncharacterised family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of these proteins is unknown..
Probab=84.78 E-value=0.3 Score=28.52 Aligned_cols=55 Identities=15% Similarity=0.054 Sum_probs=34.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHH-HH--CC---CC--HHHHHH--HHH-HHHHHHHHHHHHHHHH
Q ss_conf 887998488899679999999999-82--47---89--889566--776-8789999999999996
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRL-LL--AN---AH--PSTLLC--LTH-TKAAAAEMSHRVLEII 86 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~l-l~--~g---~~--P~~IL~--lTF-T~kAA~El~~RI~~~l 86 (242)
-..+|-|-||+|||+|+=....+= +. .+ |- -+.|=+ ++| +++-.++|.|-+.+..
T Consensus 14 ~~~lIYG~~G~GKTS~~K~l~GktL~l~~D~SSkVL~G~~nvdiim~~~d~~~~~~~~~e~~~~~~ 79 (229)
T TIGR01618 14 FRYLIYGKPGLGKTSTIKYLPGKTLVLSLDKSSKVLAGDENVDIIMADLDDEKPIQEMVEFYKELQ 79 (229)
T ss_pred CEEEEECCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 368887589887230566458878988367864434689983389986069984789999999973
No 407
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=84.76 E-value=0.72 Score=25.85 Aligned_cols=60 Identities=18% Similarity=0.191 Sum_probs=37.9
Q ss_pred CCCHHHHHHHC-CC--CCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 09489999827-68--8879984888996799999999998247898895667768789999999999
Q 537021.9.peg.4 19 QTKSEQLLASD-PT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 (242)
Q Consensus 19 ~~~~qq~~a~~-~~--~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~ 83 (242)
+-++.|+.=.. .. --++-.++||||||+.-+.--+..+.+| ..++|+..-+ |-|.=+++.
T Consensus 128 ~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~-~v~rIiLtRP----aVEAGEklG 190 (348)
T COG1702 128 PKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAG-QVRRIILTRP----AVEAGEKLG 190 (348)
T ss_pred ECCHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHCC-CHHEEECCCC----CHHCCCCCC
T ss_conf 66845878899987427366415645697111277665265406-4120100683----130364237
No 408
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=84.76 E-value=1.3 Score=24.02 Aligned_cols=126 Identities=17% Similarity=0.205 Sum_probs=64.1
Q ss_pred CCCHHHHHHHCC---CCC--EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q ss_conf 094899998276---888--799848889967999999999982478988956677687899999999999967------
Q 537021.9.peg.4 19 QTKSEQLLASDP---TRS--AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT------ 87 (242)
Q Consensus 19 ~~~~qq~~a~~~---~~~--~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~------ 87 (242)
+.++....+..+ .|. +..=++||-|||+-+.....++..+|++.-==++=|.-|+-+..|.+-+...-.
T Consensus 5 rp~p~~Ll~~~~~~~RGklkIf~G~apGVGKTyaML~~a~~~~~~G~DvviG~vEtHgR~ET~al~eGl~~ip~r~i~~~ 84 (890)
T COG2205 5 RPDPDALLANLEKEERGKLKIFLGAAPGVGKTYAMLSEAQRLLAEGVDVVIGVVETHGRRETAALLEGLEVIPRRRIEYR 84 (890)
T ss_pred CCCHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCC
T ss_conf 89968986225634577468996268886279999999999997599679998337883689999738766886411217
Q ss_pred -----------HHHCCCCCCCHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----------75216742214649-9731479997899999999999983100132111799998755
Q 537021.9.peg.4 88 -----------AWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 (242)
Q Consensus 88 -----------~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~i~Ti~~f~~~il 144 (242)
.+++.+..-....+ +.........+.+..-+.++...++-+--++|..+.|+-.-+-
T Consensus 85 g~~l~E~Dlda~L~r~P~lvLvDELAHTNa~gsrh~KR~qDiEelL~aGIDV~TT~NvQHlESLnDvV~ 153 (890)
T COG2205 85 GRTLSEFDLDAALARRPALVLVDELAHTNAPGSRHPKRWQDIEELLAAGIDVYTTVNVQHLESLNDVVA 153 (890)
T ss_pred CEEEEECCHHHHHHCCCCEEEEEHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHH
T ss_conf 823011257789735997898514330489888883035409999976980677400555767888998
No 409
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=84.75 E-value=0.87 Score=25.30 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.5
Q ss_pred CC-CCCEEEEECCCCCHHHH
Q ss_conf 76-88879984888996799
Q 537021.9.peg.4 29 DP-TRSAWVSANAGSGKTHI 47 (242)
Q Consensus 29 ~~-~~~~lV~A~aGSGKT~t 47 (242)
-| ..+++.-+|||-||||.
T Consensus 173 SPfPQHiiLYGPPGVGKTTa 192 (616)
T TIGR02903 173 SPFPQHIILYGPPGVGKTTA 192 (616)
T ss_pred CCCCCCEEEECCCCCCHHHH
T ss_conf 88866078557338847899
No 410
>KOG0342 consensus
Probab=84.66 E-value=1 Score=24.76 Aligned_cols=67 Identities=19% Similarity=0.206 Sum_probs=40.4
Q ss_pred CCHHHHHHH--CCCCCEEEEECCCCCHHHH-HHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 948999982--7688879984888996799-9999999982478---98895667768789999999999996
Q 537021.9.peg.4 20 TKSEQLLAS--DPTRSAWVSANAGSGKTHI-LVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVLEII 86 (242)
Q Consensus 20 ~~~qq~~a~--~~~~~~lV~A~aGSGKT~t-L~~rv~~ll~~g~---~P~~IL~lTFT~kAA~El~~RI~~~l 86 (242)
|.=||+.+. -++..|++.|--|||||.. |+-.+..++.... +|-.++++++||.=|-....-..+.+
T Consensus 106 T~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll 178 (543)
T KOG0342 106 TPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELL 178 (543)
T ss_pred HHHHHHHCCCCCCCCCCEEEECCCCCCEEEEHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 2888742676679843124512688741010468999998536577787148996562899998999999999
No 411
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=84.65 E-value=0.63 Score=26.26 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=18.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 688879984888996799999999998
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
++.-+.|+++.||||||.|-. +..++
T Consensus 32 ~Ge~~~ilGpnGsGKSTLl~~-i~G~~ 57 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDA-ISGRV 57 (226)
T ss_pred CCCEEEEECCCCCHHHHHHHH-HHCCC
T ss_conf 880999998999609999999-96789
No 412
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=84.62 E-value=0.67 Score=26.07 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=16.0
Q ss_pred CCC-EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 888-79984888996799999999998
Q 537021.9.peg.4 31 TRS-AWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 31 ~~~-~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
-.+ .|-.+++|||||++- ..+++.|
T Consensus 37 i~hayLf~GprG~GKTs~A-ri~akal 62 (541)
T PRK05563 37 IAHAYLFCGTRGTGKTSTA-KIFAKAV 62 (541)
T ss_pred CCEEEEEECCCCCCHHHHH-HHHHHHH
T ss_conf 3204530387995899999-9999995
No 413
>PRK03846 adenylylsulfate kinase; Provisional
Probab=84.59 E-value=3.2 Score=21.32 Aligned_cols=67 Identities=24% Similarity=0.252 Sum_probs=40.5
Q ss_pred CHHHHHHHCCCCC--EEEEECCCCCHHHHHHHHHHHHHHCCCC--------HHHHHH--HHHHHHHHHHHHHHHHHHHH
Q ss_conf 4899998276888--7998488899679999999999824789--------889566--77687899999999999967
Q 537021.9.peg.4 21 KSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLLANAH--------PSTLLC--LTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 21 ~~qq~~a~~~~~~--~lV~A~aGSGKT~tL~~rv~~ll~~g~~--------P~~IL~--lTFT~kAA~El~~RI~~~l~ 87 (242)
+..++.+..--.+ +++-+-+||||||.--.....|-..|.+ -..++. +-||.+.-.+...|+.....
T Consensus 12 ~~~~r~~~~~~kg~viWlTGLSGSGKTTlA~~L~~~L~~~~~~~~~LDGD~lR~~l~~dlgfs~~dR~~n~~r~~~lak 90 (198)
T PRK03846 12 TKAQREQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVHTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVAK 90 (198)
T ss_pred CHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999868998699987999998899999999999975997599777999874366789899999999999999999
No 414
>PRK00300 gmk guanylate kinase; Provisional
Probab=84.56 E-value=0.68 Score=26.05 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=13.8
Q ss_pred CCC-EEEEECCCCCHHHHHHH
Q ss_conf 888-79984888996799999
Q 537021.9.peg.4 31 TRS-AWVSANAGSGKTHILVQ 50 (242)
Q Consensus 31 ~~~-~lV~A~aGSGKT~tL~~ 50 (242)
.|. ++|+||.|+|||+.+-.
T Consensus 6 ~g~livisGPSG~GK~tl~~~ 26 (208)
T PRK00300 6 RGLLIVLSAPSGAGKSTLVRA 26 (208)
T ss_pred CCCEEEEECCCCCCHHHHHHH
T ss_conf 883899999998899999999
No 415
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=84.46 E-value=0.59 Score=26.46 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=14.1
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 79984888996799999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVL 53 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~ 53 (242)
++|-+-||+||||+- .++.
T Consensus 3 I~ITGTPGvGKTT~~-~~L~ 21 (180)
T COG1936 3 IAITGTPGVGKTTVC-KLLR 21 (180)
T ss_pred EEEECCCCCCHHHHH-HHHH
T ss_conf 799379998668799-9999
No 416
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=84.40 E-value=1.1 Score=24.67 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=18.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 888799848889967999999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLR 54 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ 54 (242)
.+++++.++.|+||++.+...+..
T Consensus 2 ~r~iil~Gpsg~GK~tl~~~l~~~ 25 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 977999999999999999999863
No 417
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=84.38 E-value=1.1 Score=24.57 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=19.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 799848889967999999999982478988956677
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lT 69 (242)
+-|.+|.||||| |++.++...+.. +.+.+++
T Consensus 11 IgIaG~SgSGKT-Tv~~~l~~~~~~----~~~~~I~ 41 (218)
T COG0572 11 IGIAGGSGSGKT-TVAKELSEQLGV----EKVVVIS 41 (218)
T ss_pred EEEECCCCCCHH-HHHHHHHHHHCC----CCCEEEE
T ss_conf 998679877889-999999998286----7524765
No 418
>KOG0651 consensus
Probab=84.30 E-value=0.65 Score=26.17 Aligned_cols=58 Identities=12% Similarity=0.164 Sum_probs=31.7
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2768887998488899679999999999824789889566776878999999999999677
Q 537021.9.peg.4 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 (242)
Q Consensus 28 ~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~ 88 (242)
..|..-+++-+|||||||+.- ..|+. .-|+.|=.+.+=.+--+=+.|-..=|++++..
T Consensus 163 Ik~Pkg~ll~GppGtGKTlla-~~Vaa--~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~y 220 (388)
T KOG0651 163 IKPPKGLLLYGPPGTGKTLLA-RAVAA--TMGVNFLKVVSSALVDKYIGESARLIRDMFRY 220 (388)
T ss_pred CCCCCEEEEECCCCCCHHHHH-HHHHH--HCCCCEEEEEHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 778825687679998645999-99998--65985477447666330026578899999977
No 419
>KOG1942 consensus
Probab=84.28 E-value=3.3 Score=21.22 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=22.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 68887998488899679999999999824789
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~ 61 (242)
.++-+|+.+|||||||..-.. +..-|..|+|
T Consensus 63 aGravLlaGppgtGKTAlAla-isqELG~kvP 93 (456)
T KOG1942 63 AGRAVLLAGPPGTGKTALALA-ISQELGPKVP 93 (456)
T ss_pred CCCEEEEECCCCCCHHHHHHH-HHHHHCCCCC
T ss_conf 672799736998765689999-9997479998
No 420
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=84.26 E-value=1.2 Score=24.31 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 88879984888996799999999998
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
-|+-+|+++.|+|||+.|.-..+...
T Consensus 488 vGHTlIiGpTGaGKTvll~fL~aQ~~ 513 (852)
T PRK13891 488 LGHTFMFGPTGAGKSTHLGIIAAQLR 513 (852)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 66407878999988999999999974
No 421
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase; InterPro: IPR005757 The tripeptide L-ananyl-gamma-D-glutamyl-meso-diaminopimelic acid is efficiently re-cycled during the formation of bacterial cell wall murein. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase is an essential enzyme in this process which links the tripeptide to UDP-N-acetylmuramate.; GO: 0016874 ligase activity, 0007047 cell wall organization and biogenesis.
Probab=84.16 E-value=0.96 Score=24.98 Aligned_cols=36 Identities=33% Similarity=0.474 Sum_probs=27.7
Q ss_pred CCCEEEEECCCC-CHHHHHHHHHHHHHH-CCCCHHHHHH
Q ss_conf 888799848889-967999999999982-4789889566
Q 537021.9.peg.4 31 TRSAWVSANAGS-GKTHILVQRVLRLLL-ANAHPSTLLC 67 (242)
Q Consensus 31 ~~~~lV~A~aGS-GKT~tL~~rv~~ll~-~g~~P~~IL~ 67 (242)
.+.-+|+|.+|| |||||- .-+.+.|+ .|.+|.=++.
T Consensus 100 L~drWVlaV~GTHGKTTT~-~M~~WvLE~~G~~pGFliG 137 (459)
T TIGR01081 100 LRDRWVLAVAGTHGKTTTA-SMLAWVLEQCGLKPGFLIG 137 (459)
T ss_pred HHCCEEEEEECCCCCHHHH-HHHHHHHHHCCCCCCCEEC
T ss_conf 2134278950788604688-9999999863798872673
No 422
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=84.15 E-value=0.94 Score=25.04 Aligned_cols=26 Identities=27% Similarity=0.508 Sum_probs=16.8
Q ss_pred CCCCEE-EEECCCCCHHHHHHHHHHHHH
Q ss_conf 688879-984888996799999999998
Q 537021.9.peg.4 30 PTRSAW-VSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 30 ~~~~~l-V~A~aGSGKT~tL~~rv~~ll 56 (242)
+.|.++ +.++-|+||||.+ .-+..++
T Consensus 24 ~~Gei~gl~G~NGaGKSTLl-~~i~Gl~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLI-KIILGLL 50 (173)
T ss_pred CCCCEEEEECCCCCCHHHHH-HHHHCCC
T ss_conf 79939999878997999999-9997685
No 423
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=84.12 E-value=1.6 Score=23.43 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=21.5
Q ss_pred CCCCCEE--EEECCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 7688879--98488899679999999999824789
Q 537021.9.peg.4 29 DPTRSAW--VSANAGSGKTHILVQRVLRLLLANAH 61 (242)
Q Consensus 29 ~~~~~~l--V~A~aGSGKT~tL~~rv~~ll~~g~~ 61 (242)
.|.+|++ --+++||||+++---..-+|-..|..
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~vs~liA~~Ly~~G~~ 83 (127)
T pfam06309 49 KPRKPLVLSFHGWTGTGKNFVAEIIADNLYRDGLR 83 (127)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99997488701899987989999999998754347
No 424
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=84.03 E-value=0.74 Score=25.76 Aligned_cols=19 Identities=42% Similarity=0.588 Sum_probs=15.9
Q ss_pred CCCCE-EEEECCCCCHHHHH
Q ss_conf 68887-99848889967999
Q 537021.9.peg.4 30 PTRSA-WVSANAGSGKTHIL 48 (242)
Q Consensus 30 ~~~~~-lV~A~aGSGKT~tL 48 (242)
+.|.+ -.++|-||||||.|
T Consensus 24 ~~G~lvaLLGPSGSGKsTLL 43 (241)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLL 43 (241)
T ss_pred CCCEEEEEECCCCCCHHHHH
T ss_conf 38527985468987378999
No 425
>PRK05748 replicative DNA helicase; Provisional
Probab=83.95 E-value=3.4 Score=21.13 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=33.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79984888996799999999998-2478988956677687899999999999967
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll-~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~ 87 (242)
++|-|-||.|||....+-..+.. ..|. .++.++. ...+.++..|+....+
T Consensus 206 iviaaRP~mGKTa~alnia~~~a~~~~~---~v~~fSl-EM~~~~l~~R~la~~s 256 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVATKTDK---NVAIFSL-EMGAESLVMRMLCAEG 256 (448)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCC---EEEEEEC-CCCHHHHHHHHHHHHH
T ss_conf 9998479987689999999999985698---0899817-7888899999999974
No 426
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=83.77 E-value=0.8 Score=25.55 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=20.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHH-H-HCCCCHHHH
Q ss_conf 87998488899679999999999-8-247898895
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRL-L-LANAHPSTL 65 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~l-l-~~g~~P~~I 65 (242)
++++++.+|+|||+.| +|+... . ..+..+.++
T Consensus 1 ~ivilG~~~~GKTsll-~~l~~~~~~~~~~~~~~~ 34 (167)
T cd04160 1 SVLILGLDNAGKTTFL-EQLKTLFSKYKGLPPSKI 34 (167)
T ss_pred CEEEECCCCCCHHHHH-HHHHHCCCCCCCCCCCCC
T ss_conf 9999999998888999-988750367677765540
No 427
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=83.73 E-value=0.71 Score=25.90 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=16.1
Q ss_pred CCCCEEEEECCCCCHHHHHHH
Q ss_conf 688879984888996799999
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQ 50 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~ 50 (242)
++.-+.+.++.||||||.|-.
T Consensus 34 ~Gei~~ilGpnGaGKSTLl~~ 54 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNA 54 (194)
T ss_pred CCEEEEEECCCCCHHHHHHHH
T ss_conf 881999998999519999999
No 428
>KOG0742 consensus
Probab=83.59 E-value=0.41 Score=27.59 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=16.7
Q ss_pred HCCCCCEEEEECCCCCHHHHH
Q ss_conf 276888799848889967999
Q 537021.9.peg.4 28 SDPTRSAWVSANAGSGKTHIL 48 (242)
Q Consensus 28 ~~~~~~~lV~A~aGSGKT~tL 48 (242)
..|=++++..+|||||||-.-
T Consensus 381 ~apfRNilfyGPPGTGKTm~A 401 (630)
T KOG0742 381 QAPFRNILFYGPPGTGKTMFA 401 (630)
T ss_pred CCHHHHEEEECCCCCCHHHHH
T ss_conf 430440032479998604999
No 429
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=83.58 E-value=3.5 Score=21.03 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 888799848889967999999999982
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
..++|.++|-|+|||. |+.|++.++.
T Consensus 50 pkNILmIGPTGvGKTe-IARrLAkl~~ 75 (442)
T PRK05201 50 PKNILMIGPTGVGKTE-IARRLAKLAN 75 (442)
T ss_pred CCCEEEECCCCCCHHH-HHHHHHHHHC
T ss_conf 4316887888866789-9999999848
No 430
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=83.56 E-value=0.83 Score=25.42 Aligned_cols=16 Identities=38% Similarity=0.426 Sum_probs=14.7
Q ss_pred CEEEEECCCCCHHHHH
Q ss_conf 8799848889967999
Q 537021.9.peg.4 33 SAWVSANAGSGKTHIL 48 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL 48 (242)
++++++-+|||||+.|
T Consensus 1 ~Il~lGl~~sGKTtil 16 (162)
T cd04157 1 NILVVGLDNSGKTTII 16 (162)
T ss_pred CEEEECCCCCCHHHHH
T ss_conf 9999999999889999
No 431
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=83.52 E-value=3.5 Score=21.01 Aligned_cols=103 Identities=14% Similarity=0.216 Sum_probs=58.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHH
Q ss_conf 87998488899679999999999824789889566776878999999999999677521674221464997314799978
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKS 112 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 112 (242)
-++|-|.||=|||+-..+...++-...-.| +++=.....+.++..|+....+.... .+......+..
T Consensus 198 LiilAaRP~mGKTafalnia~n~a~~~~~~---v~iFSLEM~~eql~~R~Ls~~s~v~~----------~kirtg~l~~~ 264 (435)
T COG0305 198 LIIVAARPGMGKTALALNIALNAAADGRKP---VAIFSLEMSEEQLVMRLLSSESGIES----------SKLRTGRLSDD 264 (435)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHCCCC---EEEEECCCCHHHHHHHHHCCCCCCCH----------HCCCCCCCCHH
T ss_conf 799716899975899999999999855897---59998267999999975340115451----------00212542689
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998------31001321117999987555428
Q 537021.9.peg.4 113 DMSKARHLLITIL------ETPGGLKVQTIHAFCEAIMQQFP 148 (242)
Q Consensus 113 ~~~~~~~ll~~~l------~~~~~~~i~Ti~~f~~~ilr~~~ 148 (242)
.+.+.......+- .+...+.+..+-+-|-++.+.+.
T Consensus 265 d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~~ 306 (435)
T COG0305 265 EWERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLKLKHN 306 (435)
T ss_pred HHHHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999999999987617854337888878889999998887459
No 432
>KOG0735 consensus
Probab=83.47 E-value=1.9 Score=22.93 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=20.4
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 276888799848889967999999999982
Q 537021.9.peg.4 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 28 ~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
.-..+.+++-+++|||||... .++..-..
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~-kal~~~~~ 456 (952)
T KOG0735 428 VFRHGNILLNGPKGSGKTNLV-KALFDYYS 456 (952)
T ss_pred CCCCCCEEEECCCCCCHHHHH-HHHHHHHC
T ss_conf 334661898679987776999-99998751
No 433
>KOG0065 consensus
Probab=83.47 E-value=0.81 Score=25.51 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=20.8
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 768887998488899679999999999
Q 537021.9.peg.4 29 DPTRSAWVSANAGSGKTHILVQRVLRL 55 (242)
Q Consensus 29 ~~~~~~lV~A~aGSGKT~tL~~rv~~l 55 (242)
.|++.+||+++|||||||.|...-..+
T Consensus 139 ~pg~m~lvLG~pgsG~ttllkal~g~~ 165 (1391)
T KOG0065 139 KPGEMTLVLGPPGSGKTTLLKALAGKL 165 (1391)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 677269983389986478999983788
No 434
>pfam12128 DUF3584 Protein of unknown function (DUF3584). This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. There are two conserved sequence motifs: GKT and YLP.
Probab=83.44 E-value=1.4 Score=23.82 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=28.0
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 27688879984888996799999999998247898895667
Q 537021.9.peg.4 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 (242)
Q Consensus 28 ~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~l 68 (242)
.+.+|++-+.+.=|+||||.|-... +.=|..|++|+.-
T Consensus 14 l~ldGnt~~~GTnG~GKTTlLRlIp---~FYga~p~rlv~~ 51 (1192)
T pfam12128 14 LDLDGHTNICGTNAAGKTTLQRLIP---LFYGEYPSRIVPK 51 (1192)
T ss_pred EECCCCEEEECCCCCCHHHHHHHHH---HHCCCCHHHCCCC
T ss_conf 7337872574488886999998999---7528975532887
No 435
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=83.35 E-value=0.85 Score=25.37 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=19.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 688879984888996799999999998
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
|+.-+.|.++-||||||.+ .-+..++
T Consensus 26 ~Ge~v~ivG~sGsGKSTLl-~ll~gl~ 51 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTIL-RLLFRFY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHH-HHHCCCC
T ss_conf 9999999999999899999-9974385
No 436
>COG1158 Rho Transcription termination factor [Transcription]
Probab=83.34 E-value=0.61 Score=26.35 Aligned_cols=28 Identities=21% Similarity=0.340 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 88879984888996799999999998247
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
+...||+|||-+|||+.|- .+++.|..+
T Consensus 173 GQR~LIVAPPkaGKT~lLq-~IA~aIt~N 200 (422)
T COG1158 173 GQRGLIVAPPKAGKTTLLQ-NIANAITTN 200 (422)
T ss_pred CCEEEEECCCCCCCHHHHH-HHHHHHHCC
T ss_conf 8465686698787338999-999998637
No 437
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=83.25 E-value=0.82 Score=25.45 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=26.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHH------CC---CCHHHHHHH
Q ss_conf 76888799848889967999999999982------47---898895667
Q 537021.9.peg.4 29 DPTRSAWVSANAGSGKTHILVQRVLRLLL------AN---AHPSTLLCL 68 (242)
Q Consensus 29 ~~~~~~lV~A~aGSGKT~tL~~rv~~ll~------~g---~~P~~IL~l 68 (242)
.+..++|..++||.|||| |++.+++=+. .| .+|..++++
T Consensus 50 e~lDHvLl~GPPGlGKTT-LA~IIA~Emgvn~k~tsGp~leK~gDlaai 97 (332)
T COG2255 50 EALDHVLLFGPPGLGKTT-LAHIIANELGVNLKITSGPALEKPGDLAAI 97 (332)
T ss_pred CCCCEEEEECCCCCCHHH-HHHHHHHHHCCCEEECCCCCCCCHHHHHHH
T ss_conf 876747864799876888-999999985677376366201572659999
No 438
>PRK05480 uridine kinase; Provisional
Probab=83.23 E-value=1.2 Score=24.21 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=18.3
Q ss_pred CCCCEE--EEECCCCCHHHHHHHHHHHHHH
Q ss_conf 688879--9848889967999999999982
Q 537021.9.peg.4 30 PTRSAW--VSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 30 ~~~~~l--V~A~aGSGKT~tL~~rv~~ll~ 57 (242)
..+|++ |.+|.||||||.- .++...+.
T Consensus 3 ~k~P~iIgIaG~SgSGKTT~a-~~L~~~l~ 31 (209)
T PRK05480 3 MKQPIIIGIAGGSGSGKTTVA-STIYEELG 31 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHH-HHHHHHCC
T ss_conf 889889999899977899999-99999808
No 439
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=83.16 E-value=1.3 Score=24.13 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=14.6
Q ss_pred CEEEEECCCCCHHHHHHH
Q ss_conf 879984888996799999
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQ 50 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~ 50 (242)
-++|.+++|+|||+.+-.
T Consensus 3 livl~GpsG~GK~tl~~~ 20 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKA 20 (180)
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 999989998899999999
No 440
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=83.11 E-value=1.9 Score=22.89 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=42.4
Q ss_pred CCCCC-EEEEECCCCCHHHHHHHHHHHHHHC--------CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 76888-7998488899679999999999824--------789-8895667768789999999999996775216742214
Q 537021.9.peg.4 29 DPTRS-AWVSANAGSGKTHILVQRVLRLLLA--------NAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILS 98 (242)
Q Consensus 29 ~~~~~-~lV~A~aGSGKT~tL~~rv~~ll~~--------g~~-P~~IL~lTFT~kAA~El~~RI~~~l~~~~~~~~~~~~ 98 (242)
...|| +|..+|||.|||.. ..-|+..+.+ |+. ..+|-.---|= ...|-.||.+.+.......+....
T Consensus 346 ~~kg~IlclvGpPGvGKTSl-~~sIA~al~r~f~rislGGv~DeaeirGHrrTY--vgampGrii~~l~~a~~~nPv~ll 422 (784)
T PRK10787 346 KIKGPILCLVGPPGVGKTSL-GQSIAKATGRKYVRMALGGVRDEAEIRGHRRTY--IGSMPGKLIQKMAKVGVKNPLFLL 422 (784)
T ss_pred CCCCCEEEEECCCCCCHHHH-HHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCC--CCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 67787799646998772469-999999858986998068878888825643343--443683899999974898856650
Q ss_pred HHHHHHH
Q ss_conf 6499731
Q 537021.9.peg.4 99 AEITKIQ 105 (242)
Q Consensus 99 ~~l~~~~ 105 (242)
..+-+..
T Consensus 423 DEiDK~~ 429 (784)
T PRK10787 423 DEIDKMS 429 (784)
T ss_pred HHHHHHC
T ss_conf 0355522
No 441
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=83.08 E-value=2.2 Score=22.45 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=42.7
Q ss_pred HHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999827-6888799848889967999999999982-47898895667768789999999999996
Q 537021.9.peg.4 23 EQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 (242)
Q Consensus 23 qq~~a~~-~~~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~P~~IL~lTFT~kAA~El~~RI~~~l 86 (242)
|+.+++. -.++.||..|-|=|||+.-+.-+++.+. .| ..+|.+++|+-=+..=.+.+.+.+
T Consensus 20 Q~~i~a~al~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~---~kvlfLAPTKPLV~Qh~~~~~~v~ 82 (542)
T COG1111 20 QLNIAAKALFKNTLVVLPTGLGKTFIAAMVIANRLRWFG---GKVLFLAPTKPLVLQHAEFCRKVT 82 (542)
T ss_pred HHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCC---CEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 999999986448389952875079999999999987458---848996589517999999999985
No 442
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=82.99 E-value=0.86 Score=25.32 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=14.1
Q ss_pred EEEEECCCCCHHHHHHH
Q ss_conf 79984888996799999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQ 50 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~ 50 (242)
++|.++.|||||+.+-.
T Consensus 2 ivi~GPSG~GK~tl~~~ 18 (137)
T cd00071 2 IVLSGPSGVGKSTLLKR 18 (137)
T ss_pred EEEECCCCCCHHHHHHH
T ss_conf 99999998899999999
No 443
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative; InterPro: IPR006310 These are a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of Escherichia coli. .
Probab=82.97 E-value=0.92 Score=25.12 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=45.2
Q ss_pred HHCCCHHHHHHH-------C-CCCCEEEEECCCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 350948999982-------7-6888799848889967999999999982478-988956677687899999999999967
Q 537021.9.peg.4 17 ISQTKSEQLLAS-------D-PTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 17 ~~~~~~qq~~a~-------~-~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~-~P~~IL~lTFT~kAA~El~~RI~~~l~ 87 (242)
...=.+|.+.|- + +...++|+||-|+|||..=..=++ ..+. +-..|++=|-|+-=-+-+.|+-..+++
T Consensus 259 y~~R~~Q~~la~~v~~~l~~Gt~~~~lIEA~tG~GKtlgYLLPal---~~~~~~~~~vviST~Tk~LQ~QL~E~d~P~l~ 335 (944)
T TIGR01407 259 YEYREEQLKLAELVEDELTHGTEEKSLIEAPTGTGKTLGYLLPAL---YLAKEEEKPVVISTATKVLQSQLLEKDIPLLN 335 (944)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHEECCCCCCHHHHHHHHHH---HHCCCCCCCEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 531388999999999984157661133023766432589999999---73137888569983636656565688889888
Q ss_pred HHHC
Q ss_conf 7521
Q 537021.9.peg.4 88 AWSH 91 (242)
Q Consensus 88 ~~~~ 91 (242)
+...
T Consensus 336 ~~~~ 339 (944)
T TIGR01407 336 KILN 339 (944)
T ss_pred HHCC
T ss_conf 6518
No 444
>PRK06547 hypothetical protein; Provisional
Probab=82.91 E-value=2 Score=22.72 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=17.0
Q ss_pred CCCCC---EEEEECCCCCHHHHHHHHHHH
Q ss_conf 76888---799848889967999999999
Q 537021.9.peg.4 29 DPTRS---AWVSANAGSGKTHILVQRVLR 54 (242)
Q Consensus 29 ~~~~~---~lV~A~aGSGKT~tL~~rv~~ 54 (242)
-..|+ |.|-+++||||||.- .++..
T Consensus 10 ~~~g~~~iVaIDG~sGaGKTTLA-~~La~ 37 (184)
T PRK06547 10 LCGGDMITVLIDGRSGSGKTTLA-GELAA 37 (184)
T ss_pred HCCCCEEEEEEECCCCCCHHHHH-HHHHH
T ss_conf 55997699998689988889999-99997
No 445
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=82.84 E-value=1.3 Score=24.04 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=20.3
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 88879984888996799999999998
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
++.+.+.||+|+|||..+...+.+..
T Consensus 145 GqrigIfggaGvGKTvLl~eli~n~a 170 (466)
T PRK09280 145 GGKIGLFGGAGVGKTVLIMELINNIA 170 (466)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 74798557999980089999999999
No 446
>PRK05541 adenylylsulfate kinase; Provisional
Probab=82.80 E-value=1.9 Score=22.85 Aligned_cols=53 Identities=26% Similarity=0.337 Sum_probs=29.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCC-----HH---HHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf 87998488899679999999999824789-----88---9566-776878999999999999
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLLANAH-----PS---TLLC-LTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~~g~~-----P~---~IL~-lTFT~kAA~El~~RI~~~ 85 (242)
=+|.-+-|||||||.--....+|-..|.+ -+ +++. ..||++.=.+...|+...
T Consensus 9 viW~TGLsGSGKTTiA~~l~~~L~~~g~~~~~LDGD~lR~~~~~~gfs~~~R~~n~~r~~~l 70 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREIFGHSGYDKESRIEMALKRAKL 70 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 99978999998999999999999975997799886899987365898999999999999999
No 447
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=82.69 E-value=1.5 Score=23.57 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=34.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCC-CCH-------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88879984888996799999999998247-898-------895667768789999999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP-------STLLCLTHTKAAAAEMSHRVL 83 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~g-~~P-------~~IL~lTFT~kAA~El~~RI~ 83 (242)
.+-.+|-|+-|+|||+.| .-|.|.|... ++- .+.+.-.-|..|-.++.=-+.
T Consensus 30 l~~f~i~G~tGAGKtsLl-dAI~yALYGkP~~~~s~~~~~~~~~~~~~~~~~~~~lef~~~ 89 (1063)
T TIGR00618 30 LKLFVICGKTGAGKTSLL-DAITYALYGKPVPRESEVVASKNSLSRADSEEALAELEFALD 89 (1063)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEC
T ss_conf 573677788998354599-999998728887751467888754200107877654640135
No 448
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=82.53 E-value=1.5 Score=23.65 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=23.6
Q ss_pred HHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 89999827688879984888996799999999998
Q 537021.9.peg.4 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 22 ~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
++-..++..+.|||+.+-+||||..+ .|..|..
T Consensus 153 ~~i~~~A~s~~pVLI~GE~GTGK~~~--Ar~IH~~ 185 (441)
T PRK10365 153 SEIALVAPSEATVLIHGDSGTGKELV--ARAIHAS 185 (441)
T ss_pred HHHHHHHCCCCCEEEECCCCHHHHHH--HHHHHHC
T ss_conf 99999848899489989998109999--9999965
No 449
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=82.53 E-value=0.89 Score=25.21 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=17.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 8799848889967999999999982
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
+++.++-||||||++- .+++..+.
T Consensus 1 nI~LiG~~G~GKstig-k~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVG-RLLAKALG 24 (154)
T ss_pred CEEEECCCCCCHHHHH-HHHHHHHC
T ss_conf 9899889999889999-99999979
No 450
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=82.51 E-value=2.3 Score=22.26 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=24.0
Q ss_pred CCCCEE-EEECCCCCHHHHHHHHHHHH----------------HHCC-CCHHHHHHHH
Q ss_conf 688879-98488899679999999999----------------8247-8988956677
Q 537021.9.peg.4 30 PTRSAW-VSANAGSGKTHILVQRVLRL----------------LLAN-AHPSTLLCLT 69 (242)
Q Consensus 30 ~~~~~l-V~A~aGSGKT~tL~~rv~~l----------------l~~g-~~P~~IL~lT 69 (242)
|.|.+- |.++||||||..-....+.. =.+| .+|+++.-+.
T Consensus 41 ~~g~ITEi~G~~gsGKTQlc~qlav~~qlp~~~gg~~g~vvyIDTEg~f~~eRl~qia 98 (261)
T pfam08423 41 ETGSITEVFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEGTFRPERIVAIA 98 (261)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCHHHHCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 6772999989988878999999999940709656999728999368886989999999
No 451
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=82.49 E-value=0.91 Score=25.13 Aligned_cols=19 Identities=32% Similarity=0.705 Sum_probs=14.7
Q ss_pred CCEEEEECCCCCHHHHHHH
Q ss_conf 8879984888996799999
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQ 50 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~ 50 (242)
.-++|+||-|+||||.+-.
T Consensus 3 ~LivvsgPSGaGK~Tli~~ 21 (184)
T PRK10078 3 KLIWLMGPSGSGKDSLLAA 21 (184)
T ss_pred EEEEEECCCCCCHHHHHHH
T ss_conf 0999989986999999999
No 452
>PRK07263 consensus
Probab=82.48 E-value=3.8 Score=20.74 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=32.8
Q ss_pred CC-EEEEECCCCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88-7998488899679999999999-8247898895667768789999999999996
Q 537021.9.peg.4 32 RS-AWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 (242)
Q Consensus 32 ~~-~lV~A~aGSGKT~tL~~rv~~l-l~~g~~P~~IL~lTFT~kAA~El~~RI~~~l 86 (242)
|. ++|-|-||.|||....+...+. +.+|. .++.++. ...+.++..|+....
T Consensus 203 GdLiviaaRPsmGKTa~alnia~~iA~~~~~---~V~~fSl-EMs~~ql~~R~la~~ 255 (453)
T PRK07263 203 DQLIILAARPAVGKTAFVLNIAQNVGTKQKK---TVAIFSL-EMGAESLVDRMLAAE 255 (453)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHCCC---EEEEEEC-CCCHHHHHHHHHHHH
T ss_conf 8689997278884789999999999985598---2899924-699899999999986
No 453
>PRK12678 transcription termination factor Rho; Provisional
Probab=82.45 E-value=0.66 Score=26.13 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 8887998488899679999999999824
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLLA 58 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~~ 58 (242)
+...||+|+|-+|||++|-. |++-|..
T Consensus 411 GQRgLIVapPkaGKT~ll~~-ia~ai~~ 437 (667)
T PRK12678 411 GQRGLIVSPPKAGKTTILQD-IANAITT 437 (667)
T ss_pred CCEEEEECCCCCCCHHHHHH-HHHHHHH
T ss_conf 84546757997872599999-9999985
No 454
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=82.44 E-value=0.9 Score=25.16 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=15.8
Q ss_pred CCCCEEEEECCCCCHHHHHH
Q ss_conf 68887998488899679999
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILV 49 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~ 49 (242)
|+.-+.++++.||||||.|-
T Consensus 32 ~Ge~~~llGpnGaGKSTLl~ 51 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLD 51 (192)
T ss_pred CCEEEEEECCCCCCHHHHHH
T ss_conf 88399999999998899999
No 455
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=82.43 E-value=0.91 Score=25.14 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=17.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 888799848889967999999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLR 54 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ 54 (242)
+...+|.|++|+|||+.+ ..+++
T Consensus 69 GQR~~Ifg~~g~GKt~Ll-~~i~~ 91 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLL-GMIAR 91 (326)
T ss_pred CCEEEEECCCCCCCCHHH-HHHHH
T ss_conf 987874369999846678-76864
No 456
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=82.40 E-value=1.9 Score=22.86 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=20.4
Q ss_pred CEEEEEC--CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 8799848--889967999999999982478
Q 537021.9.peg.4 33 SAWVSAN--AGSGKTHILVQRVLRLLLANA 60 (242)
Q Consensus 33 ~~lV~A~--aGSGKT~tL~~rv~~ll~~g~ 60 (242)
+++..|+ -|+||||+.++....+..+|.
T Consensus 2 ~vi~~~~~KGG~GKtT~a~~la~~~~~~g~ 31 (231)
T pfam07015 2 QLITFCSFKGGAGKTTALMGLCSALASDGK 31 (231)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 379996179986599999999999996899
No 457
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=82.40 E-value=0.56 Score=26.62 Aligned_cols=30 Identities=30% Similarity=0.214 Sum_probs=23.1
Q ss_pred CCC-CEEEEECC----CCCHHHHHHHHHHHHHHCC
Q ss_conf 688-87998488----8996799999999998247
Q 537021.9.peg.4 30 PTR-SAWVSANA----GSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 30 ~~~-~~lV~A~a----GSGKT~tL~~rv~~ll~~g 59 (242)
|.+ +..|+|-+ |+|||||-++...+|-.+|
T Consensus 101 p~~~~~~VIAVaN~KGGVGKTTTavnLA~~LAl~G 135 (387)
T PHA02519 101 PDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQG 135 (387)
T ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 89887528998616887769999999999999769
No 458
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=82.34 E-value=1.9 Score=22.83 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=21.6
Q ss_pred CCCC-EEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 6888-79984888996799999999998247
Q 537021.9.peg.4 30 PTRS-AWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 30 ~~~~-~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
|.|. .-|.+.||||||+...+-.+.....|
T Consensus 17 p~G~ItEi~G~~gsGKT~l~lqla~~~q~~~ 47 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPG 47 (226)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 8883999999999989999999999985422
No 459
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=82.27 E-value=0.94 Score=25.04 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=31.0
Q ss_pred CCC-EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 888-79984888996799999999998247898895667----7687899999999999967752167422
Q 537021.9.peg.4 31 TRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL----THTKAAAAEMSHRVLEIITAWSHLSDEI 96 (242)
Q Consensus 31 ~~~-~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~l----TFT~kAA~El~~RI~~~l~~~~~~~~~~ 96 (242)
.|. ++|+++-||||||.| |-++.|..- .-.+|.+= +... -...+|.++.=.++.+.-.++.+
T Consensus 27 ~Gevv~iiGpSGSGKSTlL--RclN~LE~~-~~G~I~i~g~~~~~~~-~~~~~R~~vGmVFQ~fnLFPH~T 93 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLL--RCLNGLEEP-DSGSITVDGEDVGDKK-DILKLRRKVGMVFQQFNLFPHLT 93 (240)
T ss_pred CCCEEEEECCCCCCHHHHH--HHHHCCCCC-CCCEEEECCEECCCHH-HHHHHHHHCCEECCCCCCCCCCH
T ss_conf 8978999899999888999--999778688-7864999987225454-69999985576624665465532
No 460
>PRK06321 replicative DNA helicase; Provisional
Probab=82.27 E-value=3.9 Score=20.69 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=33.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf 79984888996799999999998247898895667768-7899999999999967
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT-KAAAAEMSHRVLEIIT 87 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT-~kAA~El~~RI~~~l~ 87 (242)
++|-|-||.|||....+-..+...++-.| ++=|| ...+.++..|+.....
T Consensus 229 iviaaRPsmGKTalalnia~~~a~~~~~~----v~~fSLEMs~~ql~~R~ls~~s 279 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLP----VGIFSLEMTVDQLIHRIICSRS 279 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCC----EEEECCCCCHHHHHHHHHHHHC
T ss_conf 99853899977999999999999856994----6997577999999999987403
No 461
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=82.26 E-value=1 Score=24.81 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=18.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 68887998488899679999999999
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRL 55 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~l 55 (242)
|+..++|.+..|+|||+.+ .-++.|
T Consensus 418 ~G~~llI~G~SG~GKTsLl-RaiaGL 442 (604)
T COG4178 418 PGERLLITGESGAGKTSLL-RALAGL 442 (604)
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHCC
T ss_conf 9987998789998788999-999645
No 462
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=82.24 E-value=2.2 Score=22.50 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=19.6
Q ss_pred CCCCCEEEEEC-CCCCHHHHHHHHHHHHHH
Q ss_conf 76888799848-889967999999999982
Q 537021.9.peg.4 29 DPTRSAWVSAN-AGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 29 ~~~~~~lV~A~-aGSGKT~tL~~rv~~ll~ 57 (242)
++++|+.+++| =|+||||.|-. +.+.|.
T Consensus 25 ~~~k~i~li~G~NG~GKTTll~A-i~~~LY 53 (650)
T TIGR03185 25 SSPKPIILIGGLNGAGKTTLLDA-IQLGLY 53 (650)
T ss_pred CCCCCEEEEECCCCCCHHHHHHH-HHHHHC
T ss_conf 99998799977999978999999-999956
No 463
>COG4240 Predicted kinase [General function prediction only]
Probab=82.24 E-value=2.2 Score=22.50 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=23.1
Q ss_pred CCCCCE--EEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 768887--99848889967999999999982478
Q 537021.9.peg.4 29 DPTRSA--WVSANAGSGKTHILVQRVLRLLLANA 60 (242)
Q Consensus 29 ~~~~~~--lV~A~aGSGKT~tL~~rv~~ll~~g~ 60 (242)
..++|+ -|+++-||||||+-+..+..|-..|.
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ 79 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL 79 (300)
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 1279639985268887653599999999997365
No 464
>PRK07933 thymidylate kinase; Validated
Probab=82.19 E-value=2 Score=22.68 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=25.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 79984888996799999999998247898895667768
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT 71 (242)
+.++++=||||||.+-....+|-..|. .+..+.|.
T Consensus 3 I~fEGiDGsGKSTq~~~L~~~L~~~g~---~v~~~reP 37 (213)
T PRK07933 3 IAIEGVDGAGKRTLTEALRAALEAAGR---SVATLAFP 37 (213)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC---EEEEEECC
T ss_conf 999889999899999999999997799---07998468
No 465
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=82.15 E-value=1.4 Score=23.80 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=16.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 79984888996799999999998
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
+++.++||+|||+..-.....++
T Consensus 1 i~l~G~~G~GKS~~a~~la~~~~ 23 (105)
T pfam00910 1 IWLYGPPGCGKSTLAKYLARALL 23 (105)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98979998988999999999999
No 466
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=82.13 E-value=1.2 Score=24.25 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 888799848889967999999999982
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
++.+.+.|++|+|||..+...+.+...
T Consensus 138 Gqr~gIfggaGvGKT~Ll~e~i~n~~~ 164 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVG 164 (449)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 756566527999841018999986564
No 467
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=82.13 E-value=4 Score=20.65 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=16.1
Q ss_pred CCCE-EEEECCCCCHHHHHHHHHHHHH
Q ss_conf 8887-9984888996799999999998
Q 537021.9.peg.4 31 TRSA-WVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 31 ~~~~-lV~A~aGSGKT~tL~~rv~~ll 56 (242)
-.++ |-.+++|||||++- ..++..|
T Consensus 36 i~HAyLF~GP~GtGKts~A-rifAkaL 61 (557)
T PRK07270 36 ISHAYLFSGPRGTGKTSAA-KIFAKAM 61 (557)
T ss_pred CCEEEEEECCCCCCHHHHH-HHHHHHH
T ss_conf 5404421089986899999-9999995
No 468
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=82.10 E-value=0.98 Score=24.93 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.3
Q ss_pred CEEEEECCCCCHHHHHHH
Q ss_conf 879984888996799999
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQ 50 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~ 50 (242)
-++|++.+|||||+.|-.
T Consensus 17 KililG~~~sGKTsil~~ 34 (174)
T cd04153 17 KVIIVGLDNAGKTTILYQ 34 (174)
T ss_pred EEEEECCCCCCHHHHHHH
T ss_conf 999998999988999999
No 469
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=82.02 E-value=2 Score=22.70 Aligned_cols=27 Identities=22% Similarity=0.074 Sum_probs=23.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 799848889967999999999982478
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANA 60 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~ 60 (242)
+.+++.=||||||.+-....++-.+|.
T Consensus 6 I~iEGiDGaGKTT~~~~L~~~l~~~g~ 32 (208)
T COG0125 6 IVIEGIDGAGKTTQAELLKERLEERGI 32 (208)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999788889889999999999998298
No 470
>PRK04132 replication factor C small subunit; Provisional
Probab=81.94 E-value=0.65 Score=26.18 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=14.4
Q ss_pred CEEEEECCCCCHHHHHHH
Q ss_conf 879984888996799999
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQ 50 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~ 50 (242)
++|-.+|||+|||++-..
T Consensus 48 HLLFaGPPGvGKt~~al~ 65 (863)
T PRK04132 48 HLLFAGPPGVGKTTAALA 65 (863)
T ss_pred CEEECCCCCCCCHHHHHH
T ss_conf 443048998771447888
No 471
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=81.94 E-value=1.8 Score=23.06 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=21.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 879984888996799999999998247898
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLLANAHP 62 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P 62 (242)
-.|+.+++|+||+++-.....+++..+..|
T Consensus 28 A~Lf~Gp~G~GK~~~A~~~A~~llc~~~~~ 57 (319)
T PRK08769 28 GLLICGPEGLGKRAVALALAEHVLASGPDP 57 (319)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 687589998789999999999983799797
No 472
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=81.93 E-value=1 Score=24.84 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=17.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 88879984888996799999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVL 53 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~ 53 (242)
.--+++++.+|+|||+.+ +++.
T Consensus 14 ~~Ki~ilG~~~sGKTsll-~~l~ 35 (173)
T cd04155 14 EPRILILGLDNAGKTTIL-KQLA 35 (173)
T ss_pred CCEEEEECCCCCCHHHHH-HHHH
T ss_conf 758999979999889999-9985
No 473
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=81.89 E-value=0.99 Score=24.89 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=18.7
Q ss_pred CCC-EEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 888-799848889967999999999982
Q 537021.9.peg.4 31 TRS-AWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 31 ~~~-~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
.|. +.++++-||||||+| .-++-|..
T Consensus 28 ~Gef~vllGPSGcGKSTlL-r~IAGLe~ 54 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLL-RMIAGLEE 54 (338)
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHCCCC
T ss_conf 7979999899988889999-99968877
No 474
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=81.77 E-value=1.6 Score=23.50 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=20.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 799848889967999999999982478
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANA 60 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~ 60 (242)
+-|.+.=||||||.|...+-.|-.+|.
T Consensus 5 l~ivG~k~SGKTTLie~lv~~L~~~G~ 31 (161)
T COG1763 5 LGIVGYKNSGKTTLIEKLVRKLKARGY 31 (161)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999962799734289999999975793
No 475
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=81.71 E-value=1 Score=24.79 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=14.9
Q ss_pred EEEEECCCCCHHHHHHHHH
Q ss_conf 7998488899679999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRV 52 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv 52 (242)
++|++.+|+|||+.+ +|+
T Consensus 2 i~ilG~~~vGKTsll-~~l 19 (158)
T cd00878 2 ILILGLDGAGKTTIL-YKL 19 (158)
T ss_pred EEEECCCCCCHHHHH-HHH
T ss_conf 999999999889999-999
No 476
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB; InterPro: IPR013363 Proteins in this entry are the DotB component of Dot/Icm secretion systems, as found in the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This family is most closely related to the TraJ proteins of plasmid transfer (IPR013364 from INTERPRO), rather than to proteins of other type IV secretion systems..
Probab=81.67 E-value=2.4 Score=22.20 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=45.1
Q ss_pred HHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHHHHHHCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 899998276-88879984888996799999999998247---------89889566776878999999999999677521
Q 537021.9.peg.4 22 SEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN---------AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 (242)
Q Consensus 22 ~qq~~a~~~-~~~~lV~A~aGSGKT~tL~~rv~~ll~~g---------~~P~~IL~lTFT~kAA~El~~RI~~~l~~~~~ 91 (242)
+.-.-|..| .|-|.|-+..||||.+.|+..+-.|+... ..|=+-+.=..+...|.--...|...+..++.
T Consensus 124 ~~i~~aiaPqeG~v~~tGatGsGkstlla~iirel~e~~ds~rk~ltye~Pie~vyd~~~t~~a~v~qseiPrhl~~fa~ 203 (358)
T TIGR02524 124 DAIVEAIAPQEGVVYVTGATGSGKSTLLAAIIRELIEASDSNRKVLTYEAPIEYVYDELETISAVVSQSEIPRHLNSFAD 203 (358)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCCCEEEEEHHHCCHHHHHHHH
T ss_conf 79998517888669986267763688999999998606765641464226323322110100112220002122567888
Q ss_pred C
Q ss_conf 6
Q 537021.9.peg.4 92 L 92 (242)
Q Consensus 92 ~ 92 (242)
+
T Consensus 204 G 204 (358)
T TIGR02524 204 G 204 (358)
T ss_pred H
T ss_conf 8
No 477
>KOG1514 consensus
Probab=81.63 E-value=1 Score=24.83 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=18.8
Q ss_pred CCCC-EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 6888-79984888996799999999998
Q 537021.9.peg.4 30 PTRS-AWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 30 ~~~~-~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
..|+ .-|.+.||||||.|.-.-+-.|.
T Consensus 420 ~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq 447 (767)
T KOG1514 420 GLGSCMYISGVPGTGKTATVLEVMKELQ 447 (767)
T ss_pred CCCEEEEEECCCCCCCEEHHHHHHHHHH
T ss_conf 7740799846999883212999999999
No 478
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=81.58 E-value=4.1 Score=20.52 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=16.7
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 8879984888996799999999998
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
...|-.+++|+|||++- ..++..|
T Consensus 39 HAYLFsGPrGvGKTTlA-rifAkaL 62 (613)
T PRK05896 39 HAYIFSGPRGIGKTSIA-KIFAKAI 62 (613)
T ss_pred CEEEEECCCCCCHHHHH-HHHHHHH
T ss_conf 22775589984889999-9999996
No 479
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=81.55 E-value=1 Score=24.71 Aligned_cols=26 Identities=31% Similarity=0.449 Sum_probs=18.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 688879984888996799999999998
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
++.-+.+.++=|+||||.|- -++.++
T Consensus 36 ~Ge~~~l~GpNGaGKTTLlr-~l~Gl~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLR-VLAGLL 61 (214)
T ss_pred CCCEEEEECCCCCCHHHHHH-HHHCCC
T ss_conf 89899999999987999999-997697
No 480
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=81.54 E-value=0.58 Score=26.53 Aligned_cols=49 Identities=20% Similarity=0.236 Sum_probs=29.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7998488899679999999999824789889566776878999999999999677
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~ 88 (242)
+||.+|+.|||+.---. +..+.- .+++.+.=...-=.||++||...-..
T Consensus 2 iLVtGG~rSGKS~~AE~----la~~~~--~~~~YiAT~~~~D~Em~~RI~~Hr~~ 50 (169)
T cd00544 2 ILVTGGARSGKSRFAER----LAAELG--GPVTYIATAEAFDDEMAERIARHRKR 50 (169)
T ss_pred EEEECCCCCCHHHHHHH----HHHHCC--CCCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89977866368999999----998459--98199978898898999999999966
No 481
>KOG4284 consensus
Probab=81.53 E-value=0.22 Score=29.52 Aligned_cols=56 Identities=20% Similarity=0.241 Sum_probs=40.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88799848889967999999999982478988956677687899999999999967
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~ 87 (242)
-.++|.|--|||||-+-+-.++.-+.-...--+++++|+||.-|-.+++-+.+...
T Consensus 63 mDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~ 118 (980)
T KOG4284 63 MDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAP 118 (980)
T ss_pred CCEEEEECCCCCCEEEEEEEEEHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 53589813788855899854302227566762069971435664579999998652
No 482
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=81.49 E-value=0.96 Score=24.99 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=18.6
Q ss_pred CCCC-EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 6888-79984888996799999999998
Q 537021.9.peg.4 30 PTRS-AWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 30 ~~~~-~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
+.|. +.++++-||||||+| .-++.|.
T Consensus 28 ~~Ge~~~llGpSG~GKtTlL-r~iaGl~ 54 (353)
T TIGR03265 28 KKGEFVCLLGPSGCGKTTLL-RIIAGLE 54 (353)
T ss_pred CCCCEEEEECCCCCHHHHHH-HHHHCCC
T ss_conf 89999999999953599999-9997699
No 483
>KOG1534 consensus
Probab=81.46 E-value=1.5 Score=23.56 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=32.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 879984888996799999999998247-------898895667768789999999999
Q 537021.9.peg.4 33 SAWVSANAGSGKTHILVQRVLRLLLAN-------AHPSTLLCLTHTKAAAAEMSHRVL 83 (242)
Q Consensus 33 ~~lV~A~aGSGKT~tL~~rv~~ll~~g-------~~P~~IL~lTFT~kAA~El~~RI~ 83 (242)
-.+|.++|||||+|--...+.+.-.-| .+|- +..|.-..+-.+|+=|.
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPA---ae~f~y~~~iDiRdlIs 59 (273)
T KOG1534 5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPA---AEHFNYPVTIDIRDLIS 59 (273)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEEECCHH---HHHHCCCCCCCHHHHCC
T ss_conf 58987467888430789999999862854588626878---88608962002887521
No 484
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=81.45 E-value=0.54 Score=26.73 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=16.3
Q ss_pred CCCEEEEECCCCCHHHHHH
Q ss_conf 8887998488899679999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILV 49 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~ 49 (242)
+..++.-+..|||||+||.
T Consensus 74 n~ti~aYGqTGSGKTyTm~ 92 (341)
T cd01372 74 NATVLAYGQTGSGKTYTMG 92 (341)
T ss_pred CEEEEEECCCCCCCCCCCC
T ss_conf 5169997147889864413
No 485
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=81.40 E-value=0.62 Score=26.32 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=19.8
Q ss_pred EEEEEC--CCCCHHHHHHHHHHHHHHCC
Q ss_conf 799848--88996799999999998247
Q 537021.9.peg.4 34 AWVSAN--AGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 34 ~lV~A~--aGSGKT~tL~~rv~~ll~~g 59 (242)
++++|. =|+|||||-++-...|...|
T Consensus 2 IIaVaNqKGGvGKTTtavnLA~aLA~~G 29 (261)
T pfam09140 2 VIVVGNEKGGSGKSTTAVHVAVALLYLG 29 (261)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 7999717898729999999999999889
No 486
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=81.40 E-value=1.8 Score=23.06 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=17.8
Q ss_pred HHHHCCCCCEEEEECCCCCHHH
Q ss_conf 9982768887998488899679
Q 537021.9.peg.4 25 LLASDPTRSAWVSANAGSGKTH 46 (242)
Q Consensus 25 ~~a~~~~~~~lV~A~aGSGKT~ 46 (242)
+.++..+.||||.+-+||||+.
T Consensus 342 ~~~a~~~~pVLI~GE~GtGKe~ 363 (639)
T PRK11388 342 RQAAKSSFPILLCGEEGVGKAL 363 (639)
T ss_pred HHHHCCCCCEEEECCCCCCHHH
T ss_conf 9996889968988989810999
No 487
>TIGR00595 priA primosomal protein N'; InterPro: IPR005259 All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.; GO: 0003677 DNA binding, 0006260 DNA replication.
Probab=81.39 E-value=0.93 Score=25.08 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=41.7
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9984888996799999999998247898895667768789999999999996775
Q 537021.9.peg.4 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 (242)
Q Consensus 35 lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~~~ 89 (242)
++.+.+|||||.+-..-+...+..| .+++++-.--.-+-.+..|+..+++..
T Consensus 1 ll~G~tGsGkte~y~~~~~~~l~~g---~~~~~l~Pei~l~~q~~~~~~~~fg~~ 52 (524)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALG---KSALVLVPEIALTPQTLQRFKGRFGSQ 52 (524)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHHHCCC
T ss_conf 9545678861688899999997337---717897042110167899999971872
No 488
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=81.36 E-value=4.2 Score=20.47 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=21.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 79984888996799999999998247
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
+=|-++||.||++.+-..+.+++..|
T Consensus 32 iGiTG~PGaGKStli~~l~~~~~~~g 57 (267)
T pfam03308 32 VGITGVPGAGKSTLIEALGMELRRRG 57 (267)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 98768998879999999999999689
No 489
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=81.28 E-value=0.88 Score=25.24 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=18.2
Q ss_pred HCCCCCE-EEEECCCCCHHHHHHHHHHHH
Q ss_conf 2768887-998488899679999999999
Q 537021.9.peg.4 28 SDPTRSA-WVSANAGSGKTHILVQRVLRL 55 (242)
Q Consensus 28 ~~~~~~~-lV~A~aGSGKT~tL~~rv~~l 55 (242)
..+.+|+ -|-++|||||+|+- ..++..
T Consensus 280 L~~~~~IIAIDGPAgSGKSTvA-K~lA~~ 307 (512)
T PRK13477 280 LMKRRPIIAIDGPAGAGKSTVT-RAVAKK 307 (512)
T ss_pred CCCCCCEEEEECCCCCCHHHHH-HHHHHH
T ss_conf 1578877998678757878999-999998
No 490
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=81.24 E-value=0.49 Score=27.06 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=17.0
Q ss_pred CCCEEEEECCCCCHHHHHHH
Q ss_conf 88879984888996799999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQ 50 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~ 50 (242)
+..++.-+..|||||+||..
T Consensus 77 n~ti~aYGqTGSGKTyTm~G 96 (325)
T cd01369 77 NGTIFAYGQTGSGKTYTMEG 96 (325)
T ss_pred CEEEEEECCCCCCCCCEECC
T ss_conf 64699745789998625127
No 491
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.17 E-value=1.1 Score=24.57 Aligned_cols=26 Identities=23% Similarity=0.543 Sum_probs=19.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 688879984888996799999999998
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
++.-+.|.++-||||||.+ .-+..++
T Consensus 28 ~Ge~vaivG~sGsGKSTLl-~ll~gl~ 53 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLI-NLLMRFY 53 (229)
T ss_pred CCCEEEEECCCCCHHHHHH-HHHHCCC
T ss_conf 9999999999998099999-9996686
No 492
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.16 E-value=0.97 Score=24.95 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=34.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHH--CCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 888799848889967999999999982--4789889566--77687899999999999967752167422146499
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLC--LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll~--~g~~P~~IL~--lTFT~kAA~El~~RI~~~l~~~~~~~~~~~~~~l~ 102 (242)
+.-+.++++-||||||+| .-+..++. .| +|++ ...++....+++.+|.=.+++.+-.++-+....+.
T Consensus 27 Ge~~~ilGpSG~GKSTll-r~i~gl~~p~~G----~I~i~g~~i~~~~~~~lrr~ig~vfQ~~~Lfp~ltV~eNi~ 97 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTM-KMINRLIEPTSG----EIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIA 97 (242)
T ss_pred CCEEEEECCCCCHHHHHH-HHHHCCCCCCCE----EEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCCHHHHHH
T ss_conf 989999999995699999-999759999815----99999999999997897388679917997588882999999
No 493
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=81.13 E-value=2.4 Score=22.14 Aligned_cols=53 Identities=23% Similarity=0.312 Sum_probs=31.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCC-----HH---HHHH--HHHHHHHHHHHHHHHHHHH
Q ss_conf 7998488899679999999999824789-----88---9566--7768789999999999996
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANAH-----PS---TLLC--LTHTKAAAAEMSHRVLEII 86 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~-----P~---~IL~--lTFT~kAA~El~~RI~~~l 86 (242)
+|+-+-|||||||.--.-..+|-..|.+ -+ ..+. +.||.+.=.+.-.|+....
T Consensus 5 iW~TGLsGsGKTTlA~~l~~~L~~~~~~~~~LDGD~~R~~l~~dlgys~~~R~~n~~r~~~la 67 (157)
T pfam01583 5 VWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVRHGLNKDLGFSEEDRTENIRRIAEVA 67 (157)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 998898999999999999999997599779976887750125777989899999999999999
No 494
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.08 E-value=1.1 Score=24.64 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=17.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 88879984888996799999999998
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRLL 56 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~ll 56 (242)
+.-+.++++-||||||.| .-+..+.
T Consensus 26 Ge~~~iiGpSGsGKSTll-r~i~Gl~ 50 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLL-RLIAGFE 50 (232)
T ss_pred CCEEEEECCCCCHHHHHH-HHHHCCC
T ss_conf 989999999998399999-9997799
No 495
>PRK01184 hypothetical protein; Provisional
Probab=81.01 E-value=1 Score=24.81 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=20.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799848889967999999999982478988956677687899999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 (242)
Q Consensus 34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~R 81 (242)
+.+-++||||||++- .... ..| +.++.+..-...++++|
T Consensus 4 IGlTG~iGSGKstva-~i~~---e~G-----~~vi~~~Divr~~v~~~ 42 (183)
T PRK01184 4 IIVTGMPGSGKGEFS-KIAR---ELG-----IPVVVMGDVIREEVKKR 42 (183)
T ss_pred EEEECCCCCCHHHHH-HHHH---HCC-----CEEEECCHHHHHHHHHC
T ss_conf 999689988789999-9999---779-----93998607789999983
No 496
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=80.99 E-value=1.6 Score=23.41 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=19.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 8887998488899679999999999
Q 537021.9.peg.4 31 TRSAWVSANAGSGKTHILVQRVLRL 55 (242)
Q Consensus 31 ~~~~lV~A~aGSGKT~tL~~rv~~l 55 (242)
++.+.+.||+|+|||+.+...+.+.
T Consensus 155 GQRigIfggaGvGKTvLl~eli~ni 179 (480)
T CHL00060 155 GGKIGLFGGAGVGKTVLIMELINNI 179 (480)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6688765689988789999999612
No 497
>KOG0242 consensus
Probab=80.90 E-value=0.5 Score=26.96 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHC-C-CCCEEEEECCCCCHHHHHHHH
Q ss_conf 0078888897323509489999827-6-888799848889967999999
Q 537021.9.peg.4 5 NSFQEHSETIDLISQTKSEQLLASD-P-TRSAWVSANAGSGKTHILVQR 51 (242)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~qq~~a~~-~-~~~~lV~A~aGSGKT~tL~~r 51 (242)
..|-+.+..-|+...+...-...+- . ++.|+-.+.-|||||+|+...
T Consensus 59 ~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~ 107 (675)
T KOG0242 59 RVFGEESTQEDVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGS 107 (675)
T ss_pred EECCCCCCHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCCCCEEEECC
T ss_conf 0448998878898740078899974686652564237889875477515
No 498
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=80.87 E-value=3 Score=21.55 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 8888897323509489999827688879984888996799999999998247
Q 537021.9.peg.4 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59 (242)
Q Consensus 8 ~~~~~~~~~~~~~~~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g 59 (242)
++-+...|-+..+-+.-.......+-++|.++=+|||||..+...=.++.+|
T Consensus 50 ~d~~~~~e~i~~~~~~~~~~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG 101 (398)
T COG1341 50 EDRSEPLEEIADTWESKSESAGKVGVVMVVGPVDSGKSTLTTYLANKLLARG 101 (398)
T ss_pred HHHHHHHHHHHHCCCCCCHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 6763178997632244201206873899989867678899999998876447
No 499
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.85 E-value=1.1 Score=24.54 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=29.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHH--CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6888799848889967999999999982--47-898895667768789999999999996775
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLL--AN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~--~g-~~P~~IL~lTFT~kAA~El~~RI~~~l~~~ 89 (242)
++.-+.++++-||||||++ .-+..|+. .| +-....-+...+++....++.+|.-.++..
T Consensus 25 ~Ge~~~iiG~SGsGKSTll-~~i~gL~~p~~G~I~~~g~~i~~~~~~~~~~~r~~ig~vfQ~~ 86 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLL-RLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSG 86 (235)
T ss_pred CCCEEEEECCCCCHHHHHH-HHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHCCEEEEECCC
T ss_conf 9989999999997299999-9997599989858999999999899889999757829970498
No 500
>PRK06217 hypothetical protein; Validated
Probab=80.79 E-value=1.8 Score=22.99 Aligned_cols=48 Identities=21% Similarity=0.266 Sum_probs=29.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHH-CCCC-------HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88799848889967999999999982-4789-------8895667768789999999999
Q 537021.9.peg.4 32 RSAWVSANAGSGKTHILVQRVLRLLL-ANAH-------PSTLLCLTHTKAAAAEMSHRVL 83 (242)
Q Consensus 32 ~~~lV~A~aGSGKT~tL~~rv~~ll~-~g~~-------P~~IL~lTFT~kAA~El~~RI~ 83 (242)
..++|.++.||||||. ..++...+. .-++ |.. ..||.|=..+-+.++.
T Consensus 2 ~rI~i~G~sGsGkSTl-a~~La~~l~~~~~~lD~~~W~p~~---~pf~~kR~~~eR~~ll 57 (185)
T PRK06217 2 MRIHITGASGSGTTTL-GAALAEALDLPHLDTDDFFWLPTD---PPFTTKREPEERLRLL 57 (185)
T ss_pred CEEEEECCCCCCHHHH-HHHHHHHHCCCEEECCCCEECCCC---CCCCCCCCHHHHHHHH
T ss_conf 6799978998878999-999999759896864555356899---9756437999999999
Done!