HHsearch alignment for GI: peg_409 and conserved domain: pfam00004

>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.

Probab=94.46  E-value=0.037  Score=34.89  Aligned_cols=51  Identities=20%  Similarity=0.166  Sum_probs=26.4

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             799848889967999999999982478988956677687899999999999967
Q 537021.9.peg.4   34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT   87 (242)
Q Consensus        34 ~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~l~   87 (242)
T Consensus         1 iLl~GppGtGKT~~a-~~la~~~~--~~~~~v~~~~~~~~~~g~~~~~i~~~f~   51 (131)
T pfam00004         1 LLLYGPPGTGKTTLA-KAVAKELG--APFIEISGSELVSKYVGESEKRLRELFE   51 (131)
T ss_pred             CEEECCCCCCHHHHH-HHHHHHHC--CCCEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             987899999999999-99999978--9853324201222334506888999999