HHsearch alignment for GI: peg_409 and conserved domain: pfam00158

>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=90.46  E-value=0.28  Score=28.73  Aligned_cols=34  Identities=15%  Similarity=0.249  Sum_probs=25.0

Q ss_pred             CHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             489999827688879984888996799999999998
Q 537021.9.peg.4   21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL   56 (242)
Q Consensus        21 ~~qq~~a~~~~~~~lV~A~aGSGKT~tL~~rv~~ll   56 (242)
T Consensus        12 ~~~i~~~a~~~~pVLI~GE~GtGK~~--lAr~IH~~   45 (168)
T pfam00158        12 LELAKRVAPTDATVLITGESGTGKEL--FARAIHQL   45 (168)
T ss_pred             HHHHHHHHCCCCCEEEECCCCCCHHH--HHHHHHHH
T ss_conf             99999995889988998999888899--99999985