HHsearch alignment for GI: peg_409 and conserved domain: pfam02399
>pfam02399 Herpes_ori_bp Origin of replication binding protein. This Pfam family represents the herpesvirus origin of replication binding protein, probably involved in DNA replication.
Probab=93.66 E-value=0.083 Score=32.47 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=38.8
Q ss_pred CCCE-EEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8887-998488899679999999999824789889566776878999999999999
Q 537021.9.peg.4 31 TRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 (242)
Q Consensus 31 ~~~~-lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~~ 85 (242)
T Consensus 48 ~r~V~VVRAPMGSGKTTALi~wL~~~L~~--~d~SvLVVSCRRSFT~tL~~Rf~~a 101 (829)
T pfam02399 48 ARPVLVVRAPMGSGKTTALIEWLRAALDS--PDTSVLVVSCRRSFTQTLLDRFNDA 101 (829)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCC--CCCEEEEEECHHHHHHHHHHHHHHC
T ss_conf 74468997688887189999999997378--6654999970167899999999866