HHsearch alignment for GI: peg_409 and conserved domain: pfam02534
>pfam02534 TraG TraG/TraD family. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems.
Probab=91.50 E-value=0.069 Score=33.04 Aligned_cols=28 Identities=36% Similarity=0.414 Sum_probs=20.3
Q ss_pred HCCC-CCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 2768-88799848889967999999999982
Q 537021.9.peg.4 28 SDPT-RSAWVSANAGSGKTHILVQRVLRLLL 57 (242)
Q Consensus 28 ~~~~-~~~lV~A~aGSGKT~tL~~rv~~ll~ 57 (242)
T Consensus 40 ~~~~~~H~lviaptgsGKt~~~V--iPnLl~ 68 (468)
T pfam02534 40 TDGDFSHVLVFAGTGSGKGVGVV--IPNLLV 68 (468)
T ss_pred ECCCCCEEEEECCCCCCCCCCCH--HHHHHH
T ss_conf 17997679998489997234242--988851