HHsearch alignment for GI: peg_409 and conserved domain: pfam04310
>pfam04310 MukB MukB N-terminal. This family represents the N-terminal region of MukB, one of a group of bacterial proteins essential for the movement of nucleoids from mid-cell towards the cell quarters (i.e. chromosome partitioning). The structure of the N-terminal domain consists of an antiparallel six-stranded beta sheet surrounded by one helix on one side and by five helices on the other side. It contains an exposed Walker A loop in an unexpected helix-loop-helix motif (in other proteins, Walker A motifs generally adopt a P loop conformation as part of a strand-loop-helix motif embedded in a conserved topology of alternating helices and (parallel) beta strands).
Probab=90.66 E-value=1.4 Score=23.81 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.8
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 998488899679999999999824
Q 537021.9.peg.4 35 WVSANAGSGKTHILVQRVLRLLLA 58 (242)
Q Consensus 35 lV~A~aGSGKT~tL~~rv~~ll~~ 58 (242)
T Consensus 31 tLsG~NGAGKsT~m~Af~talIPD 54 (227)
T pfam04310 31 TLSGGNGAGKSTTMAAFITALIPD 54 (227)
T ss_pred EEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 864478765487999999986666