HHsearch alignment for GI: peg_409 and conserved domain: pfam04851
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=97.16 E-value=0.0012 Score=45.48 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=41.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 688879984888996799999999998247898895667768789999999999
Q 537021.9.peg.4 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 (242)
Q Consensus 30 ~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~ 83 (242)
T Consensus 17 ~~~~~~i~~pTGsGKT~~~~~~i~~~~~~~---~~~lvlvp~~~L~~Q~~~~~l 67 (103)
T pfam04851 17 EKKRGLIVMATGSGKTLTAAKLIARLLKGK---KKVLFLVPRKDLLEQALEEFV 67 (103)
T ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHHHHH
T ss_conf 639869995899987999999999998469---929999082999999999656