HHsearch alignment for GI: peg_409 and conserved domain: pfam06745
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=95.37 E-value=0.012 Score=38.42 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=35.3
Q ss_pred CCCC-EEEEECCCCCHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6888-799848889967999999999-982478988956677687899999999999
Q 537021.9.peg.4 30 PTRS-AWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 30 ~~~~-~lV~A~aGSGKT~tL~~rv~~-ll~~g~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
T Consensus 17 ~~gs~~LI~G~pGsGKT~la~qfl~~ga~~~g---e~~lYis~ee~-~~~l~~~~~~ 69 (231)
T pfam06745 17 PEGRVVLITGGPGTGKTIFGLQFLYNGALEYG---EPGVYVTLEEP-PEDLRENAKS 69 (231)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCC---CCEEEEEECCC-HHHHHHHHHH
T ss_conf 29969999858972599999999999998658---96899981379-9999999998