HHsearch alignment for GI: peg_409 and conserved domain: pfam07652
>pfam07652 Flavi_DEAD Flavivirus DEAD domain.
Probab=96.25 E-value=0.0041 Score=41.68 Aligned_cols=48 Identities=25% Similarity=0.256 Sum_probs=39.7
Q ss_pred EEEEECCCCCHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79984888996799-9999999982478988956677687899999999999
Q 537021.9.peg.4 34 AWVSANAGSGKTHI-LVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 (242)
Q Consensus 34 ~lV~A~aGSGKT~t-L~~rv~~ll~~g~~P~~IL~lTFT~kAA~El~~RI~~ 84 (242)
T Consensus 5 t~ld~HPGaGKTr~vLP~~v~~~i~~~---lRtlVLaPTRVV~~Em~eAL~g 53 (146)
T pfam07652 5 TVLDLHPGAGKTRKVLPELVRECIDRR---LRTLVLAPTRVVLAEMEEALRG 53 (146)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHCC---CEEEEECCHHHHHHHHHHHHCC
T ss_conf 798538999970224899999999728---6189977279999999999758