HHsearch alignment for GI: peg_409 and conserved domain: pfam07724

>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.

Probab=90.09  E-value=0.35  Score=28.09  Aligned_cols=30  Identities=30%  Similarity=0.447  Sum_probs=22.9

Q ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf             7688879984888996799999999998247
Q 537021.9.peg.4   29 DPTRSAWVSANAGSGKTHILVQRVLRLLLAN   59 (242)
Q Consensus        29 ~~~~~~lV~A~aGSGKT~tL~~rv~~ll~~g   59 (242)
T Consensus         1 ~p~~~~l~~GPsGvGKT~-lAk~la~~l~~~   30 (168)
T pfam07724         1 RPIGSFLFLGPTGVGKTE-LAKALAELLFGD   30 (168)
T ss_pred             CCCEEEEEECCCCCCHHH-HHHHHHHHHCCC
T ss_conf             983799988989989999-999999996798