BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 537021.9.peg.409_1 (242 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done Results from round 1 >gi|315122046|ref|YP_004062535.1| double-strand break repair helicase AddA [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495448|gb|ADR52047.1| double-strand break repair helicase AddA [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 1179 Score = 290 bits (743), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 157/218 (72%), Positives = 185/218 (84%) Query: 1 MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60 M++ NS Q +S D I+ TKS+QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL+ A Sbjct: 1 MMHLNSSQNNSNITDWITWTKSQQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLSGA 60 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 +PS LLCLTHTK AAAEMSHRV EIIT WSHLSDE LS EITKIQG K N+SD+SKAR L Sbjct: 61 NPSALLCLTHTKEAAAEMSHRVFEIITEWSHLSDEQLSVEITKIQGIKQNESDISKARLL 120 Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 L+ ILETP GLKVQTIH+FCE++++QFPLE+NIT F++ D +QSKK IEEAKKST+ASI Sbjct: 121 LVKILETPNGLKVQTIHSFCESLIRQFPLESNITGDFSVLDGDQSKKPIEEAKKSTIASI 180 Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNRTAL 218 +LD+N E K+AF +IL ND ++E L+SDIISNR+AL Sbjct: 181 LLDDNVEFKQAFDDILNSYNDINLEDLMSDIISNRSAL 218 >gi|218682571|ref|ZP_03530172.1| ATP-dependent UvrD family DNA helicase [Rhizobium etli CIAT 894] Length = 415 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 104/203 (51%), Positives = 147/203 (72%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+ Sbjct: 20 IGWTTIQQAIASDPERSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 79 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS+RV E + W L DE LS IT+I+G P+ +++AR L LETPGGLK+QTI Sbjct: 80 EMSNRVFERLADWVVLDDEDLSRRITQIEGTAPDAIKLAEARRLFAKALETPGGLKIQTI 139 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ + L+ +A+++ L + + + L +AF +L Sbjct: 140 HAFCEALLHQFPLEANVAGHFSVLDDRAAAALLSDARRALLTATAPEADSALAEAFAYVL 199 Query: 197 EISNDEDIETLISDIISNRTALK 219 ++ ++ +E L+ DI++NR A++ Sbjct: 200 DLGDESGLENLLGDIVANRNAIR 222 >gi|222084227|ref|YP_002542753.1| double-strand break repair helicase AddA [Agrobacterium radiobacter K84] gi|221721675|gb|ACM24831.1| double-strand break repair helicase AddA [Agrobacterium radiobacter K84] Length = 1188 Score = 227 bits (578), Expect = 1e-57, Method: Composition-based stats. Identities = 107/203 (52%), Positives = 152/203 (74%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+ Sbjct: 22 IGWTTVQQSIASDPERSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 81 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS+RV + + AW+ LSDE L A I +I+G +P+ +++AR L LETPGGLK+QTI Sbjct: 82 EMSNRVFDRLAAWATLSDEELKARIAEIEGAEPDLFKLAEARRLFAKALETPGGLKIQTI 141 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ + L+++A++S LA+ + EL +AF +L Sbjct: 142 HAFCEALLHQFPLEANVAGHFSVLDDRAAATLLDDARRSLLAATTPQRDAELAEAFSYVL 201 Query: 197 EISNDEDIETLISDIISNRTALK 219 ++ ++ +ETL+ DI++ R A++ Sbjct: 202 DLGDESGLETLLGDIVAKRNAIR 224 >gi|222147062|ref|YP_002548019.1| ATP-dependant DNA helicase [Agrobacterium vitis S4] gi|221734052|gb|ACM35015.1| ATP-dependant DNA helicase [Agrobacterium vitis S4] Length = 1182 Score = 226 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 112/224 (50%), Positives = 160/224 (71%), Gaps = 3/224 (1%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 D I T +Q LASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS++LCLT+TKAA Sbjct: 12 DPIDWTTRQQSLASDPARSAWVSANAGSGKTHVLTQRVIRLLLAGARPSSILCLTYTKAA 71 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EMS+RV + + W+ LSDE LS I I+ + P++ +++AR L LETPGGLK+Q Sbjct: 72 ASEMSNRVFDRLAEWATLSDEELSRRIETIERRPPDRMKIAEARRLFARALETPGGLKIQ 131 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TIHAFCEA++ QFPLEAN+ HF++ D+ + L+ +A++S L + +++ L +AF E Sbjct: 132 TIHAFCEALLHQFPLEANVAGHFSVLDDRAASVLLADARRSLLTATAAEDDANLAEAFAE 191 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +L + ++ +E L+SDI+SNR A++ F + R+ +E +L Sbjct: 192 VLSLGDEFGLENLLSDIVSNRHAVR---GFLAVARRKGGVESAL 232 >gi|209551530|ref|YP_002283447.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537286|gb|ACI57221.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1183 Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 104/203 (51%), Positives = 148/203 (72%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+ Sbjct: 17 IGWTTIQQAIASDPERSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 76 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS+RV E + W L DE LS IT+I+G P+ +++AR L LETPGGLK+QTI Sbjct: 77 EMSNRVFERLADWVVLDDEDLSRRITQIEGAAPDGIKLAEARRLFAKALETPGGLKIQTI 136 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ ++ L+ +A+++ L + + + L +AF +L Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAEALLSDARRALLTATAPEGDSTLAEAFAYVL 196 Query: 197 EISNDEDIETLISDIISNRTALK 219 ++ ++ +E L+ DI++NR A++ Sbjct: 197 DLGDESGLENLLGDIVANRNAIR 219 >gi|116249792|ref|YP_765630.1| ATP-dependent UvrD family DNA helicase [Rhizobium leguminosarum bv. viciae 3841] gi|115254440|emb|CAK05514.1| putative ATP-dependent UvrD family DNA helicase [Rhizobium leguminosarum bv. viciae 3841] Length = 1183 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 104/203 (51%), Positives = 146/203 (71%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLL+ A PS +LCLT+TKAAA+ Sbjct: 17 IGWTTIQQAIASDPLRSAWVSANAGSGKTHVLTQRVIRLLLSGARPSAILCLTYTKAAAS 76 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS+RV E + W L DE LS IT+I+G P+ +++AR L LETPGGLK+QTI Sbjct: 77 EMSNRVFERLAEWVVLDDEDLSRRITQIEGMAPDGLKLAEARRLFAKALETPGGLKIQTI 136 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ + L+ +A+++ L + D + L +AF +L Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAVALLSDARRALLTATAPDEDSALAEAFAYVL 196 Query: 197 EISNDEDIETLISDIISNRTALK 219 + ++ +E L+ DI++NR A++ Sbjct: 197 NLGDESGLENLLGDIVANRNAIR 219 >gi|159184128|ref|NP_353063.2| ATP-dependant DNA helicase [Agrobacterium tumefaciens str. C58] gi|159139465|gb|AAK85848.2| ATP-dependant DNA helicase [Agrobacterium tumefaciens str. C58] Length = 1185 Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats. Identities = 105/203 (51%), Positives = 148/203 (72%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T + Q LASDP SAWVSANAGSGKTH+L QRV+RLLLA PS +LCLT+TKAAA+ Sbjct: 19 IDWTSARQRLASDPASSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAAS 78 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS RV + + W+ L D L IT I+GK P++ +++AR L LETPGGLK+QTI Sbjct: 79 EMSSRVFDRLAEWATLPDSDLKDRITTIEGKVPDRIKLAEARRLFAKALETPGGLKIQTI 138 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ + L+ EA++S L ++ +++ EL +A +L Sbjct: 139 HAFCEALLHQFPLEANVAGHFSVLDDRAATTLLAEARRSLLTAVSTEDDAELVQALAYVL 198 Query: 197 EISNDEDIETLISDIISNRTALK 219 +++++ +E L+S II+NR+AL+ Sbjct: 199 DLADESGLEALLSAIIANRSALR 221 >gi|241206969|ref|YP_002978065.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860859|gb|ACS58526.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1183 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 103/203 (50%), Positives = 145/203 (71%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLL+ A PS +LCLT+TKAAA+ Sbjct: 17 IGWTTIQQAIASDPLRSAWVSANAGSGKTHVLTQRVIRLLLSGARPSAILCLTYTKAAAS 76 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS+RV E + W L DE L IT+I+G P+ +++AR L LETPGGLK+QTI Sbjct: 77 EMSNRVFERLAEWVVLDDEDLGRRITQIEGMAPDGLKLAEARRLFAKALETPGGLKIQTI 136 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ + L+ +A+++ L + D + L +AF +L Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAVALLSDARRALLTATAPDEDSALSEAFAYVL 196 Query: 197 EISNDEDIETLISDIISNRTALK 219 + ++ +E L+ DI++NR A++ Sbjct: 197 NLGDESGLENLLGDIVANRNAIR 219 >gi|86355694|ref|YP_467586.1| nuclease/helicase protein, ATP dependent [Rhizobium etli CFN 42] gi|45505284|gb|AAS67014.1| AddA [Rhizobium etli] gi|86279796|gb|ABC88859.1| probable nuclease/helicase protein, ATP dependent [Rhizobium etli CFN 42] Length = 1183 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 103/203 (50%), Positives = 144/203 (70%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+ Sbjct: 17 IGWTTIQQAIASDPERSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 76 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS+RV E + W L DE LS I +I+G P+ +++AR L LETPGGLK+QTI Sbjct: 77 EMSNRVFERLADWVVLDDEDLSRRIMQIEGTAPDALKLAEARRLFAKALETPGGLKIQTI 136 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ + L+ +A+++ L + L +AF +L Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAAALLSDARRALLTATAPVEGSALAEAFAYVL 196 Query: 197 EISNDEDIETLISDIISNRTALK 219 + ++ +E L++DI++NR A++ Sbjct: 197 NLGDESGLENLLADIVANRNAIR 219 >gi|325291476|ref|YP_004277340.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3] gi|325059329|gb|ADY63020.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3] Length = 1185 Score = 216 bits (549), Expect = 3e-54, Method: Composition-based stats. Identities = 100/203 (49%), Positives = 146/203 (71%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T Q LASDP SAWVSANAGSGKTH+L QRV+RLLLA PS +LCLT+TKAAA+ Sbjct: 19 IDWTSDRQRLASDPASSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAAS 78 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS RV + + W+ L D L + I+GK P++ +++AR L LETPGGLK+QTI Sbjct: 79 EMSSRVFDRLAEWATLPDNDLGDRVAAIEGKMPDRIKLAEARRLFAKALETPGGLKIQTI 138 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ + L+ EA++S L ++ + + +L ++ +L Sbjct: 139 HAFCEALLHQFPLEANVAGHFSVLDDRAATTLLAEARRSLLTAVSTEGDTDLTQSLAYVL 198 Query: 197 EISNDEDIETLISDIISNRTALK 219 +++++ +E+L++ II+NR+AL+ Sbjct: 199 DLADESGLESLLTAIIANRSALR 221 >gi|150398434|ref|YP_001328901.1| double-strand break repair helicase AddA [Sinorhizobium medicae WSM419] gi|150029949|gb|ABR62066.1| Double-strand break repair helicase AddA [Sinorhizobium medicae WSM419] Length = 1189 Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats. Identities = 103/200 (51%), Positives = 141/200 (70%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T Q LASDP RSAWVSANAGSGKTH+L QRV+RLLLA PS +LCLT+TKAAA+EMS Sbjct: 20 TTERQALASDPARSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAASEMS 79 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 +RV E + W+ L D L I I+GK+P + +AR L LETPGGLK+QTIHAF Sbjct: 80 NRVFEKLAEWATLDDAALEKRIEAIEGKRPATGKIQEARRLFARALETPGGLKIQTIHAF 139 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 CEA++ QFPLEAN+ HF++ D+ + L+ +A+++ L + N+ EL AF +LE++ Sbjct: 140 CEALLHQFPLEANVAGHFSVLDDRAAAVLLADARRALLTATAAANDRELAAAFATVLELA 199 Query: 200 NDEDIETLISDIISNRTALK 219 +D +E L++ I++NR ++ Sbjct: 200 DDTGLEKLLAAIVANRAQIQ 219 >gi|227823893|ref|YP_002827866.1| DNA helicase (double-strand break repair), AddA type [Sinorhizobium fredii NGR234] gi|227342895|gb|ACP27113.1| DNA helicase (double-strand break repair), AddA type [Sinorhizobium fredii NGR234] Length = 1189 Score = 213 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 99/200 (49%), Positives = 141/200 (70%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T Q LASDP RSAWVSANAGSGKTH+L QRV+RLLLA PS +LCLT+TKAAA+EMS Sbjct: 20 TTERQSLASDPARSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAASEMS 79 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 +R+ E + W+ L D L I I+GK+P + + +AR L LETPGGLK+QTIHAF Sbjct: 80 NRIFERLAEWATLDDAALEKRIETIEGKRPPLAKIHEARRLFAKALETPGGLKIQTIHAF 139 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 EA++ QFPLEAN+ HF++ D+ + L+ +A+++ L++ + EL +AF +L+++ Sbjct: 140 SEALLHQFPLEANVAGHFSVLDDRAAAVLLADARRALLSATAAEGETELAEAFATVLDLA 199 Query: 200 NDEDIETLISDIISNRTALK 219 +D +E L+ I++NR ++ Sbjct: 200 DDTGLEKLLQAIVANRAPIQ 219 >gi|307322014|ref|ZP_07601393.1| double-strand break repair helicase AddA [Sinorhizobium meliloti AK83] gi|306892352|gb|EFN23159.1| double-strand break repair helicase AddA [Sinorhizobium meliloti AK83] Length = 1189 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 100/200 (50%), Positives = 142/200 (71%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T Q LASDP SAWVSANAGSGKTH+L QRV+RLLLA PS +LCLT+TKAAA+EMS Sbjct: 20 TTQRQALASDPACSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAASEMS 79 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 +RV E + W+ L D L I I+GK+P + + +AR L LETPGGLK+QTIHAF Sbjct: 80 NRVFEKLAEWATLDDTTLEKRIEAIEGKRPPTAKIQEARRLFARALETPGGLKIQTIHAF 139 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 CEA++ QFPLEAN+ HF++ D+ + L+ +A+++ L + ++ EL +AF +L+++ Sbjct: 140 CEALLHQFPLEANVAGHFSVLDDRAAAVLLADARRALLTATAAASDGELAEAFATVLDLA 199 Query: 200 NDEDIETLISDIISNRTALK 219 +D +E L++ I++NR ++ Sbjct: 200 DDTGLEKLLAAIVANRAPIQ 219 >gi|15963787|ref|NP_384140.1| putative ATP-dependent nuclease/helicase protein [Sinorhizobium meliloti 1021] gi|307310975|ref|ZP_07590620.1| double-strand break repair helicase AddA [Sinorhizobium meliloti BL225C] gi|15072962|emb|CAC41421.1| ATP-dependent nuclease / helicase [Sinorhizobium meliloti 1021] gi|306899655|gb|EFN30282.1| double-strand break repair helicase AddA [Sinorhizobium meliloti BL225C] Length = 1189 Score = 209 bits (531), Expect = 3e-52, Method: Composition-based stats. Identities = 100/200 (50%), Positives = 142/200 (71%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T Q LASDP SAWVSANAGSGKTH+L QRV+RLLLA PS +LCLT+TKAAA+EMS Sbjct: 20 TTQRQALASDPACSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAASEMS 79 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 +RV E + W+ L D L I I+GK+P + + +AR L LETPGGLK+QTIHAF Sbjct: 80 NRVFEKLAEWATLDDTTLEKRIEAIEGKRPPTAKIQEARRLFARALETPGGLKIQTIHAF 139 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 CEA++ QFPLEAN+ HF++ D+ + L+ +A+++ L + ++ EL +AF +L+++ Sbjct: 140 CEALLHQFPLEANVAGHFSVLDDRAAAVLLADARRALLTATAAASDGELAEAFATVLDLA 199 Query: 200 NDEDIETLISDIISNRTALK 219 +D +E L++ I++NR ++ Sbjct: 200 DDTGLEKLLAAIVANRAPIQ 219 >gi|327192794|gb|EGE59722.1| putative ATP-dependent exonuclease V protein [Rhizobium etli CNPAF512] Length = 1183 Score = 208 bits (529), Expect = 7e-52, Method: Composition-based stats. Identities = 102/203 (50%), Positives = 145/203 (71%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+ Sbjct: 17 IGWTTIQQAIASDPLRSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 76 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS+RV E + W L D+ LS I +I+G P++ +++AR L LETPGGLK+QTI Sbjct: 77 EMSNRVFERLADWVVLDDDDLSRRIMQIEGTAPDRIKLAEARRLFAKALETPGGLKIQTI 136 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ + L+ +A+++ L + + L +AF +L Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAAALLSDARRALLTATAPEEGSALAEAFAYVL 196 Query: 197 EISNDEDIETLISDIISNRTALK 219 + ++ +E L+ DI++NR A++ Sbjct: 197 NLGDESGLENLLGDIVANRNAIR 219 >gi|190889666|ref|YP_001976208.1| probable ATP-dependent exonuclease V protein, nuclease and helicase domains [Rhizobium etli CIAT 652] gi|190694945|gb|ACE89030.1| probable ATP-dependent exonuclease V protein, nuclease and helicase domains [Rhizobium etli CIAT 652] Length = 1183 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 102/203 (50%), Positives = 145/203 (71%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+ Sbjct: 17 IGWTTIQQAIASDPLRSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 76 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS+RV E + W L D+ LS I +I+G P++ +++AR L LETPGGLK+QTI Sbjct: 77 EMSNRVFERLADWVVLDDDDLSRRIMQIEGTAPDRIKLAEARRLFAKALETPGGLKIQTI 136 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ + L+ +A+++ L + + L +AF +L Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAAALLSDARRALLTATAPEEGSALAEAFAYVL 196 Query: 197 EISNDEDIETLISDIISNRTALK 219 + ++ +E L+ DI++NR A++ Sbjct: 197 NLGDESGLENLLGDIVANRNAIR 219 >gi|110635907|ref|YP_676115.1| DNA helicase/exodeoxyribonuclease V, subunit A [Mesorhizobium sp. BNC1] gi|110286891|gb|ABG64950.1| DNA helicase/exodeoxyribonuclease V, subunit A [Chelativorans sp. BNC1] Length = 1177 Score = 206 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 102/196 (52%), Positives = 142/196 (72%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q LASDP+ SAWVSANAGSGKTH+L RV+RLLL PS +LCLT+T+AAAA M++RV Sbjct: 15 QALASDPSLSAWVSANAGSGKTHVLASRVIRLLLKGTDPSKILCLTYTRAAAANMANRVF 74 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 E + WS LSD+ L+ E+ K++G++P+ + +AR L LETPGGLK+QTIHAFCEAI Sbjct: 75 ENLAGWSLLSDDDLAEEVAKLEGRRPSSEKLRRARQLFARALETPGGLKIQTIHAFCEAI 134 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + QFPLEANI HF + DE+ + L EA++ L SI + + L++AF E+LE + Sbjct: 135 LHQFPLEANIAGHFDLLDEQMEEALFAEARRDLLTSIAAERDGPLEEAFAEVLERGGESG 194 Query: 204 IETLISDIISNRTALK 219 ++TL+++I++ R L+ Sbjct: 195 LQTLLTEIVARRDELR 210 >gi|260463224|ref|ZP_05811426.1| double-strand break repair helicase AddA [Mesorhizobium opportunistum WSM2075] gi|259031074|gb|EEW32348.1| double-strand break repair helicase AddA [Mesorhizobium opportunistum WSM2075] Length = 1166 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 94/202 (46%), Positives = 135/202 (66%), Gaps = 3/202 (1%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S T + Q A+DP SAWVSANAGSGKTH+L QRV+RLLL PS +LCLT+T+AAAA Sbjct: 9 SDTATSQARAADPQNSAWVSANAGSGKTHVLAQRVIRLLLNGTDPSKILCLTYTRAAAAN 68 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 MS+RV ++ W+ L D L+A I ++G++P++ M +AR L LETPGGLK+QTIH Sbjct: 69 MSNRVFSTLSEWTSLGDADLAARIEALEGRRPDRDTMRRARRLFAEALETPGGLKIQTIH 128 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFCE+++ QFPLEANI SHF + D + L A++ +++ + +L +AF +LE Sbjct: 129 AFCESVLHQFPLEANIPSHFEMLDSQMEASLFAAARREMISAA---GDADLTEAFATVLE 185 Query: 198 ISNDEDIETLISDIISNRTALK 219 + ++ L+ +I+ R L+ Sbjct: 186 RGGEAGLDALLGEIVRKRDGLR 207 >gi|13474239|ref|NP_105807.1| ATP-dependent nuclease subunit A [Mesorhizobium loti MAFF303099] gi|14024991|dbj|BAB51593.1| ATP-dependent nuclease subunit A [Mesorhizobium loti MAFF303099] Length = 1170 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 94/202 (46%), Positives = 134/202 (66%), Gaps = 1/202 (0%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S T + Q A+DP SAWVSANAGSGKTH+L QRV+RLLL PS +LCLT+T+AAAA Sbjct: 9 SDTANSQARAADPQNSAWVSANAGSGKTHVLAQRVIRLLLNGTDPSKILCLTYTRAAAAN 68 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 MS+RV ++ W+ L D L+A+I ++G++P++ M +AR L LETPGGLK+QTIH Sbjct: 69 MSNRVFSTLSEWTVLGDAELAAKIEALEGRRPDRDTMRRARRLFAEALETPGGLKIQTIH 128 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFCE+++ QFPLEANI +HF + D + L A++ ++ N +L AF +LE Sbjct: 129 AFCESVLHQFPLEANIPAHFEMLDGQMEASLFAAARREMISGTAA-GNPDLADAFATVLE 187 Query: 198 ISNDEDIETLISDIISNRTALK 219 + ++ L+ +I+ R L+ Sbjct: 188 RGGEAGLDALLGEIVRKRDGLR 209 >gi|254718138|ref|ZP_05179949.1| UvrD/REP helicase [Brucella sp. 83/13] gi|265983091|ref|ZP_06095826.1| double-strand break repair helicase AddA [Brucella sp. 83/13] gi|264661683|gb|EEZ31944.1| double-strand break repair helicase AddA [Brucella sp. 83/13] Length = 325 Score = 199 bits (505), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 94/210 (44%), Positives = 136/210 (64%), Gaps = 7/210 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 ETID Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+ Sbjct: 9 PETID-------AQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTY 61 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 TKAAAA M +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGG Sbjct: 62 TKAAAAVMQNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGG 121 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 LK+QTIHAFCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L Sbjct: 122 LKIQTIHAFCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAA 181 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKL 220 AF ++L+ + + +++L+ + + R L+L Sbjct: 182 AFADVLQAAGETGLQSLLDEAVGRRNGLQL 211 >gi|256112426|ref|ZP_05453347.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3 str. Ether] gi|265993864|ref|ZP_06106421.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3 str. Ether] gi|262764845|gb|EEZ10766.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3 str. Ether] Length = 710 Score = 198 bits (504), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 91/203 (44%), Positives = 134/203 (66%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA Sbjct: 9 PETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAV 68 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIH Sbjct: 69 MQNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIH 128 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 129 AFCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQ 188 Query: 198 ISNDEDIETLISDIISNRTALKL 220 + + +++L+ + + R L+L Sbjct: 189 AAGETGLQSLLDEAVGRRNGLQL 211 >gi|254696352|ref|ZP_05158180.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59] gi|260760724|ref|ZP_05873067.1| UvrD/REP family helicase [Brucella abortus bv. 2 str. 86/8/59] gi|260671156|gb|EEX57977.1| UvrD/REP family helicase [Brucella abortus bv. 2 str. 86/8/59] Length = 713 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 91/203 (44%), Positives = 133/203 (65%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA Sbjct: 9 PETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAV 68 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIH Sbjct: 69 MQNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIH 128 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF +L+ Sbjct: 129 AFCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFAYVLQ 188 Query: 198 ISNDEDIETLISDIISNRTALKL 220 + + +++L+ + + R L+L Sbjct: 189 AAGETGLQSLLDEAVGRRNGLQL 211 >gi|319780204|ref|YP_004139680.1| double-strand break repair helicase AddA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166092|gb|ADV09630.1| double-strand break repair helicase AddA [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1172 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 92/202 (45%), Positives = 134/202 (66%), Gaps = 1/202 (0%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S T + Q A+DP SAWVSANAGSGKTH+L QRV+RLLL PS +LCLT+T+AAAA Sbjct: 9 SDTATSQARAADPGNSAWVSANAGSGKTHVLAQRVIRLLLRGTDPSKILCLTYTRAAAAN 68 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 MS+RV ++ W+ L D L+A++ ++G++P+ M +AR L LETPGGLK+QTIH Sbjct: 69 MSNRVFSTLSEWTTLGDVDLAAKVEALEGRRPDLETMRRARRLFAEALETPGGLKIQTIH 128 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFCE+++ QFPLEANI +HF + D + L A++ ++ + +L +AF IL+ Sbjct: 129 AFCESVLHQFPLEANIPAHFEMLDGQMEASLFAAARREMISGTSA-GDRDLAEAFASILD 187 Query: 198 ISNDEDIETLISDIISNRTALK 219 + ++ L+ +I+ R L+ Sbjct: 188 RGGEAGLDALLGEIVRKRDGLR 209 >gi|163757508|ref|ZP_02164597.1| probable nuclease/helicase protein, ATP dependent [Hoeflea phototrophica DFL-43] gi|162285010|gb|EDQ35292.1| probable nuclease/helicase protein, ATP dependent [Hoeflea phototrophica DFL-43] Length = 1196 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 93/201 (46%), Positives = 138/201 (68%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 D+ISQT Q A+ P SAWVSANAGSGKTH+L +RV+RLLL A PS +LCLT+TKAA Sbjct: 10 DVISQTTLRQNRAATPQLSAWVSANAGSGKTHVLARRVIRLLLRGARPSAILCLTYTKAA 69 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEMS+RV + + W L D+ L+ ++T+++G + AR L T LETPGGLK+Q Sbjct: 70 AAEMSNRVFKTLADWVLLDDQALAEKLTELEGAPTEPRTLILARRLFATALETPGGLKIQ 129 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TIHAFCEA++ +FPLEANI HF++ D++++ +L+ EA++ +++ + + L A + Sbjct: 130 TIHAFCEAVLHRFPLEANIPGHFSVLDDQKAAELLAEARRELMSAQAFEADPALADAVTQ 189 Query: 195 ILEISNDEDIETLISDIISNR 215 L+I + + L++ + + R Sbjct: 190 ALDIGGESGFDKLLAGLYARR 210 >gi|254470933|ref|ZP_05084336.1| double-strand break repair helicase AddA [Pseudovibrio sp. JE062] gi|211960075|gb|EEA95272.1| double-strand break repair helicase AddA [Pseudovibrio sp. JE062] Length = 1156 Score = 195 bits (495), Expect = 5e-48, Method: Composition-based stats. Identities = 95/205 (46%), Positives = 139/205 (67%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 +D+ ++T Q A+ P SAWVSANAGSGKT +L +RV+RLLL+ PS +LCLT TKA Sbjct: 1 MDIPAKTLDSQQRAAHPENSAWVSANAGSGKTFVLARRVVRLLLSGTDPSRILCLTFTKA 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM+ RV + + W+ LSD L+AEI I+G+ + ++ AR L LETPGGLK+ Sbjct: 61 AAAEMATRVFDSLAKWTQLSDAELAAEIEDIEGRPTSPKQLANARRLFAKALETPGGLKI 120 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 QTIHAFCEA++ QFPLEAN+ HF++ D+ +++L+ EA+ S L ++ ++ A Sbjct: 121 QTIHAFCEALLHQFPLEANVAGHFSVLDDRLAEELLNEARASILHRAEIEPESDIGSALS 180 Query: 194 EILEISNDEDIETLISDIISNRTAL 218 +++E+ D +E +S++IS R A Sbjct: 181 QLIELLPDSGVEKALSELISRRDAF 205 >gi|304392405|ref|ZP_07374346.1| double-strand break repair helicase AddA [Ahrensia sp. R2A130] gi|303295509|gb|EFL89868.1| double-strand break repair helicase AddA [Ahrensia sp. R2A130] Length = 1195 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 98/203 (48%), Positives = 136/203 (66%), Gaps = 3/203 (1%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 QT EQ AS P SAWVSANAGSGKT++L QRV+RLLLA PS +LCLT TKAAA M Sbjct: 11 QTSLEQAKASAPDHSAWVSANAGSGKTYVLTQRVVRLLLAGTDPSRILCLTFTKAAAGVM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQG---KKPNKSDMSKARHLLITILETPGGLKVQT 135 S+RV E + +++ L D+ L + +++G K P++ + +AR L LETPGGLK+QT Sbjct: 71 SNRVFETLASFASLDDDALKTALVELEGPNCKAPSREKIQRARTLFARALETPGGLKIQT 130 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IHAFCE+++ QFPLEAN+ +F+ DE Q K+++E+A++ + +L KAF+ I Sbjct: 131 IHAFCESLLHQFPLEANVPGNFSALDEAQGKQMLEQARRDVIVDADAAPESDLGKAFHAI 190 Query: 196 LEISNDEDIETLISDIISNRTAL 218 L+ + D IE +S+ IS R L Sbjct: 191 LDAATDHAIEQGLSEAISKREVL 213 >gi|23502951|ref|NP_699078.1| UvrD/Rep family helicase [Brucella suis 1330] gi|161620015|ref|YP_001593902.1| double-strand break repair helicase AddA [Brucella canis ATCC 23365] gi|260567425|ref|ZP_05837895.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40] gi|23348986|gb|AAN30993.1| helicase, UvrD/Rep family [Brucella suis 1330] gi|161336826|gb|ABX63131.1| double-strand break repair helicase AddA [Brucella canis ATCC 23365] gi|260156943|gb|EEW92023.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40] Length = 1180 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 134/202 (66%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKL 220 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211 >gi|256370501|ref|YP_003108012.1| double-strand break repair helicase AddA [Brucella microti CCM 4915] gi|256000664|gb|ACU49063.1| double-strand break repair helicase AddA [Brucella microti CCM 4915] Length = 1180 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 134/202 (66%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKL 220 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211 >gi|254705105|ref|ZP_05166933.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str. 686] gi|261755810|ref|ZP_05999519.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str. 686] gi|261745563|gb|EEY33489.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str. 686] Length = 1180 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 134/202 (66%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKL 220 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211 >gi|306842786|ref|ZP_07475427.1| double-strand break repair helicase AddA [Brucella sp. BO2] gi|306287059|gb|EFM58567.1| double-strand break repair helicase AddA [Brucella sp. BO2] Length = 1180 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 134/202 (66%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKL 220 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211 >gi|148560369|ref|YP_001259904.1| double-strand break repair helicase AddA [Brucella ovis ATCC 25840] gi|148371626|gb|ABQ61605.1| double-strand break repair helicase AddA [Brucella ovis ATCC 25840] Length = 1180 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 134/202 (66%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKL 220 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211 >gi|306837652|ref|ZP_07470521.1| double-strand break repair helicase AddA [Brucella sp. NF 2653] gi|306407210|gb|EFM63420.1| double-strand break repair helicase AddA [Brucella sp. NF 2653] Length = 1180 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 134/202 (66%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKL 220 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211 >gi|254713494|ref|ZP_05175305.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1] gi|254716150|ref|ZP_05177961.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1] gi|261217923|ref|ZP_05932204.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1] gi|261321227|ref|ZP_05960424.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1] gi|260923012|gb|EEX89580.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1] gi|261293917|gb|EEX97413.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1] Length = 1180 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 135/202 (66%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL + PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLESTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKL 220 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211 >gi|225853531|ref|YP_002733764.1| double-strand break repair helicase AddA [Brucella melitensis ATCC 23457] gi|254700733|ref|ZP_05162561.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str. 513] gi|254709079|ref|ZP_05170890.1| double-strand break repair helicase AddA [Brucella pinnipedialis B2/94] gi|256030604|ref|ZP_05444218.1| double-strand break repair helicase AddA [Brucella pinnipedialis M292/94/1] gi|256045706|ref|ZP_05448584.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1 str. Rev.1] gi|256262985|ref|ZP_05465517.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9] gi|260563008|ref|ZP_05833494.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M] gi|261316580|ref|ZP_05955777.1| double-strand break repair helicase AddA [Brucella pinnipedialis B2/94] gi|261751245|ref|ZP_05994954.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str. 513] gi|265987652|ref|ZP_06100209.1| double-strand break repair helicase AddA [Brucella pinnipedialis M292/94/1] gi|265992127|ref|ZP_06104684.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1 str. Rev.1] gi|225641896|gb|ACO01810.1| double-strand break repair helicase AddA [Brucella melitensis ATCC 23457] gi|260153024|gb|EEW88116.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M] gi|261295803|gb|EEX99299.1| double-strand break repair helicase AddA [Brucella pinnipedialis B2/94] gi|261740998|gb|EEY28924.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str. 513] gi|263003193|gb|EEZ15486.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1 str. Rev.1] gi|263092858|gb|EEZ17033.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9] gi|264659849|gb|EEZ30110.1| double-strand break repair helicase AddA [Brucella pinnipedialis M292/94/1] gi|326410100|gb|ADZ67165.1| double-strand break repair helicase AddA [Brucella melitensis M28] gi|326539817|gb|ADZ88032.1| double-strand break repair helicase AddA [Brucella melitensis M5-90] Length = 1180 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 134/202 (66%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKL 220 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211 >gi|294851330|ref|ZP_06792003.1| double-strand break repair helicase AddA [Brucella sp. NVSL 07-0026] gi|294819919|gb|EFG36918.1| double-strand break repair helicase AddA [Brucella sp. NVSL 07-0026] Length = 1180 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 134/202 (66%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKL 220 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211 >gi|254694724|ref|ZP_05156552.1| double-strand break repair helicase AddA [Brucella abortus bv. 3 str. Tulya] gi|261215053|ref|ZP_05929334.1| double-strand break repair helicase AddA [Brucella abortus bv. 3 str. Tulya] gi|260916660|gb|EEX83521.1| double-strand break repair helicase AddA [Brucella abortus bv. 3 str. Tulya] Length = 1180 Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 134/202 (66%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKL 220 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211 >gi|225626478|ref|ZP_03784517.1| double-strand break repair helicase AddA [Brucella ceti str. Cudo] gi|256158600|ref|ZP_05456490.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1] gi|256254011|ref|ZP_05459547.1| double-strand break repair helicase AddA [Brucella ceti B1/94] gi|260169510|ref|ZP_05756321.1| double-strand break repair helicase AddA [Brucella sp. F5/99] gi|261221152|ref|ZP_05935433.1| double-strand break repair helicase AddA [Brucella ceti B1/94] gi|261759038|ref|ZP_06002747.1| UvrD/REP helicase [Brucella sp. F5/99] gi|265997112|ref|ZP_06109669.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1] gi|225618135|gb|EEH15178.1| double-strand break repair helicase AddA [Brucella ceti str. Cudo] gi|260919736|gb|EEX86389.1| double-strand break repair helicase AddA [Brucella ceti B1/94] gi|261739022|gb|EEY27018.1| UvrD/REP helicase [Brucella sp. F5/99] gi|262551580|gb|EEZ07570.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1] Length = 1180 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 134/202 (66%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKL 220 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211 >gi|256060066|ref|ZP_05450248.1| ATP-dependent nuclease subunit A [Brucella neotomae 5K33] gi|261324043|ref|ZP_05963240.1| double-strand break repair helicase AddA [Brucella neotomae 5K33] gi|261300023|gb|EEY03520.1| double-strand break repair helicase AddA [Brucella neotomae 5K33] Length = 1180 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 134/202 (66%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFIRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKL 220 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211 >gi|62290945|ref|YP_222738.1| UvrD/Rep family helicase [Brucella abortus bv. 1 str. 9-941] gi|82700856|ref|YP_415430.1| UvrD/REP helicase [Brucella melitensis biovar Abortus 2308] gi|189025157|ref|YP_001935925.1| UvrD/REP helicase [Brucella abortus S19] gi|237816450|ref|ZP_04595443.1| double-strand break repair helicase AddA [Brucella abortus str. 2308 A] gi|254690236|ref|ZP_05153490.1| UvrD/REP helicase [Brucella abortus bv. 6 str. 870] gi|254731267|ref|ZP_05189845.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292] gi|256258489|ref|ZP_05464025.1| UvrD/REP helicase [Brucella abortus bv. 9 str. C68] gi|260546208|ref|ZP_05821948.1| UvrD/REP helicase [Brucella abortus NCTC 8038] gi|260755777|ref|ZP_05868125.1| double-strand break repair helicase AddA [Brucella abortus bv. 6 str. 870] gi|260759000|ref|ZP_05871348.1| double-strand break repair helicase AddA [Brucella abortus bv. 4 str. 292] gi|260884801|ref|ZP_05896415.1| double-strand break repair helicase AddA [Brucella abortus bv. 9 str. C68] gi|297247330|ref|ZP_06931048.1| double-strand break repair helicase AddA [Brucella abortus bv. 5 str. B3196] gi|62197077|gb|AAX75377.1| helicase, UvrD/Rep family [Brucella abortus bv. 1 str. 9-941] gi|82616957|emb|CAJ12061.1| UvrD/REP helicase:ATP/GTP-binding site motif A (P-loop) [Brucella melitensis biovar Abortus 2308] gi|189020729|gb|ACD73451.1| UvrD/REP helicase [Brucella abortus S19] gi|237788517|gb|EEP62732.1| double-strand break repair helicase AddA [Brucella abortus str. 2308 A] gi|260096315|gb|EEW80191.1| UvrD/REP helicase [Brucella abortus NCTC 8038] gi|260669318|gb|EEX56258.1| double-strand break repair helicase AddA [Brucella abortus bv. 4 str. 292] gi|260675885|gb|EEX62706.1| double-strand break repair helicase AddA [Brucella abortus bv. 6 str. 870] gi|260874329|gb|EEX81398.1| double-strand break repair helicase AddA [Brucella abortus bv. 9 str. C68] gi|297174499|gb|EFH33846.1| double-strand break repair helicase AddA [Brucella abortus bv. 5 str. B3196] Length = 1180 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 133/202 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF +L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFAYVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKL 220 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211 >gi|254707379|ref|ZP_05169207.1| double-strand break repair helicase AddA [Brucella pinnipedialis M163/99/10] gi|261314862|ref|ZP_05954059.1| double-strand break repair helicase AddA [Brucella pinnipedialis M163/99/10] gi|261303888|gb|EEY07385.1| double-strand break repair helicase AddA [Brucella pinnipedialis M163/99/10] Length = 1180 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 91/202 (45%), Positives = 133/202 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF +L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFAYVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKL 220 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211 >gi|163844120|ref|YP_001628524.1| double-strand break repair helicase AddA [Brucella suis ATCC 23445] gi|163674843|gb|ABY38954.1| double-strand break repair helicase AddA [Brucella suis ATCC 23445] Length = 1180 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 90/202 (44%), Positives = 133/202 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WV ANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVPANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKL 220 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211 >gi|306843520|ref|ZP_07476121.1| double-strand break repair helicase AddA [Brucella sp. BO1] gi|306276211|gb|EFM57911.1| double-strand break repair helicase AddA [Brucella sp. BO1] Length = 1180 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 90/202 (44%), Positives = 133/202 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L D L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDAALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKL 220 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211 >gi|17988306|ref|NP_540940.1| ATP-dependent nuclease subunit A [Brucella melitensis bv. 1 str. 16M] gi|17984079|gb|AAL53204.1| ATP-dependent nuclease subunit a [Brucella melitensis bv. 1 str. 16M] Length = 1180 Score = 191 bits (486), Expect = 5e-47, Method: Composition-based stats. Identities = 89/202 (44%), Positives = 134/202 (66%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L L+TPGG+K+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARVASARRLFARALKTPGGMKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKL 220 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQL 211 >gi|114705059|ref|ZP_01437967.1| helicase, UvrD/Rep family protein [Fulvimarina pelagi HTCC2506] gi|114539844|gb|EAU42964.1| helicase, UvrD/Rep family protein [Fulvimarina pelagi HTCC2506] Length = 1211 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 93/205 (45%), Positives = 135/205 (65%), Gaps = 5/205 (2%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T +Q +A+DP S +VSANAG+GKTH+L +RV+RLLLA PS +LCLT TKAAAAEMS Sbjct: 10 TAEQQRIAADPNLSVFVSANAGAGKTHVLTERVIRLLLAGFDPSKILCLTFTKAAAAEMS 69 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 +RV + AW+ + E L+ EI K++G P + +AR L LETPGGLK+QTIHAF Sbjct: 70 NRVFARLGAWAVMDGEKLADEIAKLEGHTPKPERIDQARQLFARALETPGGLKIQTIHAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS-----IMLDNNEELKKAFYE 194 CEAI+ QFPLEAN+ HF + D+ +S+ ++ E ++ + + +EL++AF E Sbjct: 130 CEAILHQFPLEANVAGHFEVLDDGESRLMLGEVRRRLVTGAAALAAGREAADELREAFAE 189 Query: 195 ILEISNDEDIETLISDIISNRTALK 219 L I + + L+++I+ R ++ Sbjct: 190 ALAIGGEFGFDGLLTEIVQKRDDIR 214 >gi|328545810|ref|YP_004305919.1| Double-strand break repair helicase AddA [Polymorphum gilvum SL003B-26A1] gi|326415550|gb|ADZ72613.1| Double-strand break repair helicase AddA [Polymorphum gilvum SL003B-26A1] Length = 1165 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 94/202 (46%), Positives = 124/202 (61%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 ++T Q LAS P SAWVSANAGSGKT +L +RV+RLLL PS LLCLT TKAAAAE Sbjct: 8 ARTLERQDLASRPEASAWVSANAGSGKTFVLSRRVVRLLLDGTDPSRLLCLTFTKAAAAE 67 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ RV I+ W L D L+ EI + G++P + AR L LETPGGLK+QTIH Sbjct: 68 MATRVFRILGQWVALDDAALAREIEMLDGRRPGADRLKAARRLFAKALETPGGLKIQTIH 127 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFCEA++ QFPLEAN+ HF + D+ +L+ E + L D + L A ++ Sbjct: 128 AFCEALLHQFPLEANVAGHFTVLDDRVGAELMAEERARVLHRAESDPHSPLGAALGSLIR 187 Query: 198 ISNDEDIETLISDIISNRTALK 219 + D +E + ++I R AL+ Sbjct: 188 LMPDATVEAALGELIGRRDALR 209 >gi|90420586|ref|ZP_01228493.1| putative DNA helicase (UvrD/Rep family) [Aurantimonas manganoxydans SI85-9A1] gi|90335314|gb|EAS49067.1| putative DNA helicase (UvrD/Rep family) [Aurantimonas manganoxydans SI85-9A1] Length = 1209 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 94/207 (45%), Positives = 133/207 (64%), Gaps = 4/207 (1%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I++T Q +A+DP RS +VSANAGSGKTH+L +RV+RLLL+ PS +LCLT+TKAAAA Sbjct: 7 IAETTRLQAIAADPERSVFVSANAGSGKTHVLTERVVRLLLSKVEPSKILCLTYTKAAAA 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS RV + W+ D L+AEI ++ G+ P M AR L LETPGGLK+QTI Sbjct: 67 EMSGRVFARLAKWATAEDADLAAEIARLDGRPPTPERMIVARRLFAEALETPGGLKIQTI 126 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEAI+ QFPLEAN+ HF + D+ +S L+ EA++ + +E A + Sbjct: 127 HAFCEAILHQFPLEANVPGHFEVLDDAESMALLAEARRLLITGAARKAPDEAASALADAF 186 Query: 197 E----ISNDEDIETLISDIISNRTALK 219 ++ + ++ LI +I++ R A++ Sbjct: 187 ASALTLAGEWGLDQLIGEIVNRRDAIR 213 >gi|254502806|ref|ZP_05114957.1| double-strand break repair helicase AddA [Labrenzia alexandrii DFL-11] gi|222438877|gb|EEE45556.1| double-strand break repair helicase AddA [Labrenzia alexandrii DFL-11] Length = 1180 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 89/200 (44%), Positives = 131/200 (65%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T+ Q LAS P SAWVSANAGSGKT +L +RV+RLLL PS +L LT TKAAAAEM+ Sbjct: 19 TRQRQDLASRPRASAWVSANAGSGKTFVLSRRVVRLLLDGTDPSRILALTFTKAAAAEMA 78 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV +I+ W + D L+ E+ +I+G+ P+ + ++ AR L LETPGGLK+QTIH F Sbjct: 79 TRVFKILGTWVTMDDADLAKELFEIEGRHPDAARIAMARRLFARALETPGGLKIQTIHGF 138 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 CEA++ QFPLEAN+ HF + D+ + +L+ EA+ S L ++ + +A ++++ Sbjct: 139 CEALLHQFPLEANVAGHFNVLDDRIAAELMAEARASVLHKAEMEPDSPFGQALASVIDLM 198 Query: 200 NDEDIETLISDIISNRTALK 219 +D + + ++I NR A + Sbjct: 199 SDGGAQKALDELIQNRDAFR 218 >gi|323138129|ref|ZP_08073202.1| double-strand break repair helicase AddA [Methylocystis sp. ATCC 49242] gi|322396591|gb|EFX99119.1| double-strand break repair helicase AddA [Methylocystis sp. ATCC 49242] Length = 1145 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 92/201 (45%), Positives = 130/201 (64%), Gaps = 1/201 (0%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S TK+ Q ASDP SAWVSANAGSGKTH+L QRV+RLLLA PS +LCLT+TKAAAA Sbjct: 8 SLTKNAQRDASDPAASAWVSANAGSGKTHVLSQRVVRLLLARVPPSRILCLTYTKAAAAN 67 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 MS R+ +++ W+ L DE L EI +P++++++ AR L +ETPGGLK+QTIH Sbjct: 68 MSARIFDVLARWALLDDESLIREIEATGADRPSRAELNVARCLFARAVETPGGLKIQTIH 127 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFCE ++ FP EAN + F + D+ + +L+E +K+ L M D+ L+ A + Sbjct: 128 AFCEKLLHHFPFEANAPAGFRVIDDMERAELLEASKRRALDCAMRDSG-ALRHALEHVAR 186 Query: 198 ISNDEDIETLISDIISNRTAL 218 ++ + L +++ NR AL Sbjct: 187 ETSGFGFDNLCDELLGNRDAL 207 >gi|239833145|ref|ZP_04681474.1| double-strand break repair helicase AddA [Ochrobactrum intermedium LMG 3301] gi|239825412|gb|EEQ96980.1| double-strand break repair helicase AddA [Ochrobactrum intermedium LMG 3301] Length = 1195 Score = 182 bits (461), Expect = 5e-44, Method: Composition-based stats. Identities = 92/201 (45%), Positives = 133/201 (66%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 23 ETLFAQGRAADPAASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 82 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + ++G++P + ++ AR L LETPGGLK+QTIHA Sbjct: 83 QNRVFMRLSEWAVLPDEELTERLKSLEGRRPGDARLAAARRLFARALETPGGLKIQTIHA 142 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA++ L + + EL AF ++L+ Sbjct: 143 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRQLLETAHGGGDMELAAAFADVLQA 202 Query: 199 SNDEDIETLISDIISNRTALK 219 + + +++L+ + +S R L+ Sbjct: 203 AGEMGLQSLLEEAVSRRNGLQ 223 >gi|153008153|ref|YP_001369368.1| double-strand break repair helicase AddA [Ochrobactrum anthropi ATCC 49188] gi|151560041|gb|ABS13539.1| Double-strand break repair helicase AddA [Ochrobactrum anthropi ATCC 49188] Length = 1180 Score = 181 bits (459), Expect = 7e-44, Method: Composition-based stats. Identities = 92/201 (45%), Positives = 134/201 (66%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A++P S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETLRAQSNAANPAASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + ++G++PN + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEELAERLKSLEGRRPNDARLAAARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA++ L + + +L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRQLLETAHGGGDIDLAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALK 219 S + +++L+ + +S R L+ Sbjct: 190 SGEMGLQSLLDEAVSRRNGLQ 210 >gi|118593731|ref|ZP_01551100.1| helicase, UvrD/Rep family protein [Stappia aggregata IAM 12614] gi|118433641|gb|EAV40304.1| helicase, UvrD/Rep family protein [Stappia aggregata IAM 12614] Length = 1178 Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 88/200 (44%), Positives = 130/200 (65%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T+ Q LAS P SAWVSANAGSGKT +L +RV+RLLL PS +L LT TKAAAAEM+ Sbjct: 18 TRQRQDLASRPRASAWVSANAGSGKTFVLSRRVVRLLLDGTDPSRILALTFTKAAAAEMA 77 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV +I+ W DE L+AE+ I+G+KP+ + ++ AR L LETPGGLK+QTIH F Sbjct: 78 TRVFKILGEWVTKDDEALAAELQDIEGRKPDAARLAMARRLFARALETPGGLKIQTIHGF 137 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 CE+++ QFPLEAN+ HFA+ D+ + +L+ ++ + L + +A ++++ Sbjct: 138 CESLLHQFPLEANVAGHFAVLDDRVAAELMAASRATVLHVAETEPESAFGRALASVIDLM 197 Query: 200 NDEDIETLISDIISNRTALK 219 +D + + ++I +R A + Sbjct: 198 SDGGAQKALDELIQSRDAFR 217 >gi|296448609|ref|ZP_06890479.1| double-strand break repair helicase AddA [Methylosinus trichosporium OB3b] gi|296253881|gb|EFH01038.1| double-strand break repair helicase AddA [Methylosinus trichosporium OB3b] Length = 1145 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 91/196 (46%), Positives = 134/196 (68%), Gaps = 1/196 (0%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T+ +Q +ASDP SAWVSA+AGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAAA M+ Sbjct: 11 TREKQRIASDPGLSAWVSAHAGSGKTHVLSQRVVRLLLAGASPSHILCLTYTKAAAANMA 70 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ +I+ W+ L DE L+A I +P +D+++AR L +ETPGGLK+QTIHAF Sbjct: 71 ARIFDILAGWALLDDEALAAAIMATGAPRPFPADLARARKLFAHAVETPGGLKIQTIHAF 130 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 CE ++ FP EAN+++ F + D+ + +L+E A+++TLA LD L+ A ++ + Sbjct: 131 CERLLHLFPFEANVSASFRVLDDLERAELLERARRNTLARAALDGG-ALQGALAKLSRLC 189 Query: 200 NDEDIETLISDIISNR 215 + + LI +++ R Sbjct: 190 SGGGFDDLIRELLGRR 205 >gi|307942842|ref|ZP_07658187.1| double-strand break repair helicase AddA [Roseibium sp. TrichSKD4] gi|307773638|gb|EFO32854.1| double-strand break repair helicase AddA [Roseibium sp. TrichSKD4] Length = 1174 Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 91/200 (45%), Positives = 125/200 (62%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T+ Q AS P SAWVSANAGSGKT +L +RV+RLLL PS +L LT TKAAAAEM+ Sbjct: 10 TRERQDRASQPRASAWVSANAGSGKTFVLSRRVVRLLLDGTDPSRILALTFTKAAAAEMA 69 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV +I+ W D+ L+ E+ +I+G+ P+ ++ AR L LETPGGLK+QTIH F Sbjct: 70 TRVFKILGEWVTKDDKDLADELEEIEGRTPDAKRVAFARRLFAEALETPGGLKIQTIHGF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 CEA++ QFPLEAN+ HF + D+ +L+ EA+ L + N EL A ++ + Sbjct: 130 CEALLHQFPLEANVAGHFQVLDDRIGAELMAEARGGVLHLAETNPNSELGNALNTVIGLM 189 Query: 200 NDEDIETLISDIISNRTALK 219 D E + ++I NR L+ Sbjct: 190 ADGTAEKALDELIQNRDDLR 209 >gi|319406427|emb|CBI80067.1| ATP-dependent nuclease subunit A [Bartonella sp. 1-1C] Length = 1152 Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 84/169 (49%), Positives = 114/169 (67%), Gaps = 2/169 (1%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+DPT S WVSANAGSGKTH+L +RV+RLLL P+ +LCLT+T AAA+ M R+ Sbjct: 14 QAKATDPTTSVWVSANAGSGKTHVLTERVIRLLLNGTPPARILCLTYTNAAASVMQSRIF 73 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 ++ WS L D+ L ++K++ K N ++ AR L LETPGGLK+QT HAFCE++ Sbjct: 74 RTLSNWSGLDDKQLQTILSKLENKPVNTQKLANARQLFARALETPGGLKIQTFHAFCESL 133 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + QFPLEANI SHF + D+ KKL+++A++ L I D LK+ F Sbjct: 134 LHQFPLEANIASHFELLDDINRKKLLQQARRKLL--IHRDAQLALKELF 180 >gi|319403513|emb|CBI77092.1| ATP-dependent nuclease subunit A [Bartonella rochalimae ATCC BAA-1498] Length = 1152 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 84/169 (49%), Positives = 114/169 (67%), Gaps = 2/169 (1%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+DPT S WVSANAGSGKTH+L +RV+RLLL P+ +LCLT+T AAA+ M R+ Sbjct: 14 QAKATDPTTSVWVSANAGSGKTHVLTERVIRLLLNGTPPARILCLTYTNAAASVMQSRIF 73 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 ++ WS L D+ L ++K++ K N ++ AR L LETPGGLK+QT HAFCE++ Sbjct: 74 RTLSNWSGLDDKQLQTILSKLENKPVNTQKLANARQLFARALETPGGLKIQTFHAFCESL 133 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + QFPLEANI SHF + D+ KKL+++A++ L I D LK+ F Sbjct: 134 LHQFPLEANIASHFELLDDINRKKLLQQARRKLL--IHRDAQLALKELF 180 >gi|188584140|ref|YP_001927585.1| double-strand break repair helicase AddA [Methylobacterium populi BJ001] gi|179347638|gb|ACB83050.1| double-strand break repair helicase AddA [Methylobacterium populi BJ001] Length = 1147 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 82/173 (47%), Positives = 112/173 (64%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK+ Q A+DP SAWVSANAG+GKT +L RVLRLLL A P +LCLT TKAAAA MS Sbjct: 14 TKAAQRRAADPRLSAWVSANAGAGKTKVLTDRVLRLLLDGAPPGRILCLTFTKAAAANMS 73 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV + + W L D L+AE+ ++ G++P + + AR L +ETPGGLK++T+HA Sbjct: 74 IRVFQRLGRWVTLDDAALTAELIELTGERPARDTLRLARRLFARAVETPGGLKIETLHAL 133 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 CE ++ FP EAN+ + F + D+ QS++ E + LA L N++ L AF Sbjct: 134 CERLLHMFPFEANVPARFVVLDDNQSREAFEIETDNVLADAFLGNDQTLSDAF 186 >gi|254563798|ref|YP_003070893.1| helicase-exonuclease type V protein family [Methylobacterium extorquens DM4] gi|254271076|emb|CAX27083.1| putative helicase-exonuclease type V protein family [Methylobacterium extorquens DM4] Length = 1147 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 82/173 (47%), Positives = 112/173 (64%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK+ Q A+DP SAWVSANAG+GKT +L RVLRLLL A P +LCLT TKAAAA MS Sbjct: 14 TKAAQRRAADPRLSAWVSANAGAGKTKVLTDRVLRLLLDGAPPGRILCLTFTKAAAANMS 73 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV + + W L D L+AE+T++ G++P + + AR L +ETPGGLK++T+HA Sbjct: 74 IRVFQRLGRWVTLDDAALTAELTELTGERPARDTLRLARRLFARAVETPGGLKIETLHAL 133 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 CE ++ FP EAN+ + F + D+ QS++ E + LA +L N+ L A Sbjct: 134 CERLLHMFPFEANVPARFVVLDDNQSREAFEIETDNVLADAILGGNQALSDAL 186 >gi|240141289|ref|YP_002965769.1| putative helicase-exonuclease type V protein family [Methylobacterium extorquens AM1] gi|240011266|gb|ACS42492.1| putative helicase-exonuclease type V protein family [Methylobacterium extorquens AM1] Length = 1147 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 82/173 (47%), Positives = 112/173 (64%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK+ Q A+DP SAWVSANAG+GKT +L RVLRLLL A P +LCLT TKAAAA MS Sbjct: 14 TKAAQRRAADPRLSAWVSANAGAGKTKVLTDRVLRLLLDGAPPGRILCLTFTKAAAANMS 73 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV + + W L D L+AE+T++ G++P + + AR L +ETPGGLK++T+HA Sbjct: 74 IRVFQRLGRWVTLDDAALTAELTELTGERPARDTLRLARRLFARAVETPGGLKIETLHAL 133 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 CE ++ FP EAN+ + F + D+ QS++ E + LA +L N+ L A Sbjct: 134 CERLLHMFPFEANVPARFVVLDDNQSREAFEIETDNVLADAILGGNQALSDAL 186 >gi|218532781|ref|YP_002423597.1| double-strand break repair helicase AddA [Methylobacterium chloromethanicum CM4] gi|218525084|gb|ACK85669.1| double-strand break repair helicase AddA [Methylobacterium chloromethanicum CM4] Length = 1147 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 82/173 (47%), Positives = 112/173 (64%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK+ Q A+DP SAWVSANAG+GKT +L RVLRLLL A P +LCLT TKAAAA MS Sbjct: 14 TKAAQRRAADPRLSAWVSANAGAGKTKVLTDRVLRLLLDGAPPGRILCLTFTKAAAANMS 73 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV + + W L D L+AE+T++ G++P + + AR L +ETPGGLK++T+HA Sbjct: 74 IRVFQRLGRWVTLDDAALTAELTELTGERPARDTLRLARRLFARAVETPGGLKIETLHAL 133 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 CE ++ FP EAN+ + F + D+ QS++ E + LA +L N+ L A Sbjct: 134 CERLLHMFPFEANVPARFVVLDDNQSREAFEIETDNVLADAILGGNQALSDAL 186 >gi|163853836|ref|YP_001641879.1| double-strand break repair helicase AddA [Methylobacterium extorquens PA1] gi|163665441|gb|ABY32808.1| double-strand break repair helicase AddA [Methylobacterium extorquens PA1] Length = 1147 Score = 172 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 82/173 (47%), Positives = 112/173 (64%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK+ Q A+DP SAWVSANAG+GKT +L RVLRLLL A P +LCLT TKAAAA MS Sbjct: 14 TKAAQRRAADPRLSAWVSANAGAGKTKVLTDRVLRLLLDGAPPGRILCLTFTKAAAANMS 73 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV + + W L D L+AE+T++ G++P + + AR L +ETPGGLK++T+HA Sbjct: 74 IRVFQRLGRWVTLDDAALTAELTELTGERPARDTLRLARRLFARAVETPGGLKIETLHAL 133 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 CE ++ FP EAN+ + F + D+ QS++ E + LA +L N+ L A Sbjct: 134 CERLLHMFPFEANVPARFVVLDDNQSREAFEIETDNVLADAILGGNQALSDAL 186 >gi|217977592|ref|YP_002361739.1| double-strand break repair helicase AddA [Methylocella silvestris BL2] gi|217502968|gb|ACK50377.1| double-strand break repair helicase AddA [Methylocella silvestris BL2] Length = 1151 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 91/201 (45%), Positives = 117/201 (58%), Gaps = 1/201 (0%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 QT +Q ASDP S WVSANAGSGKTH+L QRV+RLLL PS +LCLT TKAAAA M Sbjct: 9 QTLQKQREASDPAASVWVSANAGSGKTHVLAQRVVRLLLQGTPPSKILCLTFTKAAAANM 68 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 S RV + W+ L D L I P+ +M +AR L +ETPGGLK+QTIHA Sbjct: 69 SMRVFNTLARWTALDDAELRRAIVATGAPSPDWREMREARKLFARTVETPGGLKIQTIHA 128 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCE ++ FP EAN S F +ADEE+ +L+ A+ L S + + ELK + Sbjct: 129 FCERLLHLFPFEANAPSRFEVADEERQGELLARARNDVLGSAA-EADHELKAIVDRVAGE 187 Query: 199 SNDEDIETLISDIISNRTALK 219 ++ TL+ + R L+ Sbjct: 188 CSEYGFATLLEQALRLRARLR 208 >gi|121601832|ref|YP_989604.1| double-strand break repair helicase AddA [Bartonella bacilliformis KC583] gi|120614009|gb|ABM44610.1| double-strand break repair helicase AddA [Bartonella bacilliformis KC583] Length = 1155 Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 83/173 (47%), Positives = 116/173 (67%), Gaps = 3/173 (1%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+ PT S WVSANAGSGKTH+L +RV+RLLL P+ +LCLT+TKAAAA M R+ Sbjct: 14 QATATHPTTSVWVSANAGSGKTHVLSERVIRLLLNGTPPARILCLTYTKAAAAVMQSRIF 73 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 +++WS L D L +++++ K N ++ AR L LETPGGLK+QTIHAFCEA+ Sbjct: 74 RTLSSWSELDDHQLQTILSRLENKPVNAQKLTYARQLFARALETPGGLKIQTIHAFCEAL 133 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 + QF LEANI HF + D+ KKL+++A+ L + D+ + L K ++I+ Sbjct: 134 LHQFSLEANIAGHFELLDDISRKKLLQQARCQLL---IHDDAQSLLKQLFKII 183 >gi|319898220|ref|YP_004158313.1| ATP-dependent nuclease subunit A [Bartonella clarridgeiae 73] gi|319402184|emb|CBI75715.1| putative ATP-dependent nuclease subunit A [Bartonella clarridgeiae 73] Length = 1152 Score = 167 bits (424), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 82/197 (41%), Positives = 124/197 (62%), Gaps = 7/197 (3%) Query: 13 TIDLISQTK-SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 TI I QT + Q A+DP ++ WVSANAGSGKTH+L +RV+RLLL P+ +LCLT+T Sbjct: 2 TIFSIPQTALNTQAKATDPIKNVWVSANAGSGKTHVLTERVIRLLLNGTPPARILCLTYT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAA+ M R+ +++W+ D+ L ++ ++ K N ++ AR L LETPGGL Sbjct: 62 NAAASVMQSRIFRTLSSWNQFDDKQLQKILSNLENKPANAKKLANARQLFARALETPGGL 121 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 K+QT HAFCE+++ QFPLEANI HF + D+ KKL+++A+ L + + + A Sbjct: 122 KIQTFHAFCESLLHQFPLEANIAGHFELLDDINRKKLLKQARSKLLT------HRDAQLA 175 Query: 192 FYEILEISNDEDIETLI 208 E+ ++ N+ + L+ Sbjct: 176 LKELFKVINENTLNQLL 192 >gi|240849707|ref|YP_002971095.1| double-strand break repair helicase AddA [Bartonella grahamii as4aup] gi|240266830|gb|ACS50418.1| double-strand break repair helicase AddA [Bartonella grahamii as4aup] Length = 1158 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 77/155 (49%), Positives = 107/155 (69%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+ P ++ WVSANAGSGKTH+L +RV+RLLL P+ +LCLT+T+AAAA M R+ Sbjct: 14 QATATHPQKNVWVSANAGSGKTHVLSERVIRLLLNGTPPARILCLTYTRAAAAVMQSRIF 73 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 +++W+ L D L +T+ + K N ++ AR L LETPGGLK+QTIHAFCE++ Sbjct: 74 RTLSSWNELDDAQLQETLTRFEKKTVNAQKLTYARQLFARALETPGGLKIQTIHAFCESL 133 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 + QF LEANI HF + DE KKL++E+++ LA Sbjct: 134 LHQFMLEANIAGHFELPDEISRKKLLQESRRQLLA 168 >gi|90421911|ref|YP_530281.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18] gi|90103925|gb|ABD85962.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas palustris BisB18] Length = 1164 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 88/192 (45%), Positives = 113/192 (58%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ ASDPT S +VSANAGSGKTH+LVQRV+RLLLA P +LC+T TKAAAA M+ RV Sbjct: 15 QVQASDPTASVFVSANAGSGKTHVLVQRVIRLLLAGVPPEKILCITFTKAAAANMAQRVF 74 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + W LSD+ L A I +P+ +AR L LETPGGLKVQTIHA C + Sbjct: 75 TTLGHWVTLSDDSLDAAIRAAGIAQPDSKLRMRARELFACALETPGGLKVQTIHALCTRL 134 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 +QQFP EAN+ + FA+ DE +++E A S L N KA + + D Sbjct: 135 LQQFPFEANVPARFAVLDERDQTEMMERASLSVLLQAAQAPNSAAGKALTVAMTSAADVT 194 Query: 204 IETLISDIISNR 215 ++ D +R Sbjct: 195 FRDVVRDACFSR 206 >gi|298290318|ref|YP_003692257.1| double-strand break repair helicase AddA [Starkeya novella DSM 506] gi|296926829|gb|ADH87638.1| double-strand break repair helicase AddA [Starkeya novella DSM 506] Length = 1144 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 87/213 (40%), Positives = 126/213 (59%), Gaps = 4/213 (1%) Query: 11 SETIDL----ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66 SE DL + + Q ASDP SAWVSANAGSGKTH+L +RV+RLL+ P +L Sbjct: 2 SELTDLAPGPLRAATALQTTASDPLLSAWVSANAGSGKTHVLARRVIRLLMRGVPPGRIL 61 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 CLT+TKAAAA M++RVL+ + W+ L DE L EI + G +P+ + AR L LE Sbjct: 62 CLTYTKAAAANMANRVLDELRRWATLDDETLDKEIVRTDGGRPDALRRAHARRLFAQALE 121 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 TPGGLK+QTIHAFC A++ FP EA + + F +E +L+ + + Sbjct: 122 TPGGLKIQTIHAFCGALLHAFPFEAGVPAGFGELEEAARLELLARVRADVVLEAAGRPES 181 Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALK 219 L +A I+ ++D+ I+ +I ++++ AL+ Sbjct: 182 ALGQALGLIVGTTSDDGIDEIIGAMVADPAALE 214 >gi|154250594|ref|YP_001411418.1| double-strand break repair helicase AddA [Parvibaculum lavamentivorans DS-1] gi|154154544|gb|ABS61761.1| Double-strand break repair helicase AddA [Parvibaculum lavamentivorans DS-1] Length = 1156 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 84/198 (42%), Positives = 122/198 (61%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S+T Q AS P S WVSANAGSGKTH L RV RLLLA P +LCLT TKAAAAE Sbjct: 9 SETDDAQRRASHPETSVWVSANAGSGKTHALTTRVARLLLAGTDPQRILCLTFTKAAAAE 68 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 MS R+ + + W+ +SDE L+ EI +++G P+ + + A L +ETPGGLK+QTIH Sbjct: 69 MSARLYKRLGEWAMMSDEALAEEILEVEGTAPDTAKLRGAGQLFARAIETPGGLKIQTIH 128 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFCE ++ +FPLEA++ F I DE +++L++E + + L + + L +A ++ Sbjct: 129 AFCERLLGRFPLEADVPPQFEILDERAAQELMDEVRDAVLRRAGGEADTALGQALSHVVS 188 Query: 198 ISNDEDIETLISDIISNR 215 ++ L+ ++ R Sbjct: 189 RVDELAFGKLLKEVTDQR 206 >gi|158422338|ref|YP_001523630.1| putative exonuclease V [Azorhizobium caulinodans ORS 571] gi|158329227|dbj|BAF86712.1| putative exonuclease V [Azorhizobium caulinodans ORS 571] Length = 1171 Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 82/201 (40%), Positives = 121/201 (60%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 ++ Q +A+ P SAWVSANAGSGKTH+L QRV+RLLL P +LCLT+TKAAAA Sbjct: 17 AEASRRQGVAASPQISAWVSANAGSGKTHVLAQRVIRLLLQGTPPGRILCLTYTKAAAAN 76 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M++RVL+I++ W+ L D L AE+ ++ G P +AR L LETPGGLK+QTIH Sbjct: 77 MANRVLKILSRWAGLDDAALDAELMRMDGMPPTPGLRIQARRLFAAALETPGGLKIQTIH 136 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFC ++ +FP EA + + F D+ +L+ + + + L +A ++E Sbjct: 137 AFCGGLLHRFPFEAGVAAGFRELDDVGRMELMARIRADLVVEAARAPSSTLGRALARLME 196 Query: 198 ISNDEDIETLISDIISNRTAL 218 +D I+ L+ I+ R+ + Sbjct: 197 EMSDGGIDDLLEAAIAARSTI 217 >gi|319404939|emb|CBI78541.1| ATP-dependent nuclease subunit A [Bartonella sp. AR 15-3] Length = 1151 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 79/166 (47%), Positives = 111/166 (66%), Gaps = 1/166 (0%) Query: 13 TIDLISQTKSE-QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 TI I QT + Q A+ PT S WVSANAGSGKTH+L +RV+RLLL P+ +LCLT+T Sbjct: 2 TIFSIPQTALDTQAKATHPTTSVWVSANAGSGKTHVLTERVIRLLLNGTPPARILCLTYT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAA+ M R+ +++W+ D+ L ++ ++ K N ++ AR L LETPGGL Sbjct: 62 NAAASVMQSRIFCTLSSWNEFDDKQLQTILSNLEDKPANAQKLANARQLFARALETPGGL 121 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 K+QT HAFCE+++ QFPLEANI HF + D+ KKL+++A++ L Sbjct: 122 KIQTFHAFCESLLHQFPLEANIAGHFELLDDINRKKLLQQARRKLL 167 >gi|163867331|ref|YP_001608525.1| ATP-dependent nuclease subunit A [Bartonella tribocorum CIP 105476] gi|161016972|emb|CAK00530.1| ATP-dependent nuclease subunit A [Bartonella tribocorum CIP 105476] Length = 1157 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 78/189 (41%), Positives = 121/189 (64%), Gaps = 6/189 (3%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+ P ++ WVSANAGSGKTH+L +RV+RLLL P+ +LCLT+T+AAAA M R+ Sbjct: 14 QATATHPQKNVWVSANAGSGKTHVLSERVIRLLLNGTPPARILCLTYTRAAAAVMQSRIF 73 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 +++W+ L D L +T+ + K N ++ AR L LETPGGLK+QTIHAFCE++ Sbjct: 74 RTLSSWNELDDAQLQETLTRFENKPVNAQKLTYARQLFARALETPGGLKIQTIHAFCESL 133 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + QF LEANI HF + D+ +KL +E++ LA +++ A ++L++ ++ + Sbjct: 134 LHQFMLEANIAGHFELPDDISREKLRQESRCQLLA------RRDVQPALQQLLQVISEHN 187 Query: 204 IETLISDII 212 L+ + + Sbjct: 188 FNQLLYEAV 196 >gi|288959562|ref|YP_003449903.1| ATP-dependent exoDNAse beta subunit [Azospirillum sp. B510] gi|288911870|dbj|BAI73359.1| ATP-dependent exoDNAse beta subunit [Azospirillum sp. B510] Length = 1158 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 77/192 (40%), Positives = 120/192 (62%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q ASDPT S WV A+AGSGKT +L RVLRL+L+ P+ +LCLT TKAAAAEM+ R+ Sbjct: 3 QRRASDPTASVWVGASAGSGKTKVLTDRVLRLMLSGTPPARILCLTFTKAAAAEMAIRIN 62 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + W+ L DE L + ++ G++P+ AR L +++ PGG+K+QTIHAFC+++ Sbjct: 63 RTLGLWATLPDEALEDRLAELCGERPSTEARLNARRLFAQVVDCPGGMKIQTIHAFCQSL 122 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 +++FPLEA + HF + D+ + L+ EA+ + L + + + L +A + N ED Sbjct: 123 LRRFPLEAELAPHFDVMDDRTADGLLTEARDAVLHAGRTEPDSPLGRAMGRLTGELNPED 182 Query: 204 IETLISDIISNR 215 L++++ R Sbjct: 183 FAALLAELAGQR 194 >gi|209965882|ref|YP_002298797.1| helicase, UvrD [Rhodospirillum centenum SW] gi|209959348|gb|ACI99984.1| helicase, UvrD [Rhodospirillum centenum SW] Length = 1171 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 73/192 (38%), Positives = 125/192 (65%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+DP S WV A+AG+GKT +L RVLRL+LA P +LCLT TKAAAAEM++R+ Sbjct: 20 QRRAADPEASVWVGASAGTGKTKVLTDRVLRLMLAGTDPGRILCLTFTKAAAAEMANRIA 79 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 +++W+ D++L + ++ G++P++ + AR L +L+ PGG+K+QTIHAFC+++ Sbjct: 80 GRLSSWAVAEDDVLVDRLAELTGERPSRDQVVVARRLFARVLDAPGGMKIQTIHAFCQSL 139 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 +++FPLEA + +F + D+ + +L+E+AK++ LA D + L A + +++ Sbjct: 140 LRRFPLEAGLAPNFEVMDDRTAAELLEQAKQAVLADAQADADGPLGSAVAFLAGAVSEDA 199 Query: 204 IETLISDIISNR 215 L++++ R Sbjct: 200 FAELLAELTRER 211 >gi|115522488|ref|YP_779399.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53] gi|115516435|gb|ABJ04419.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas palustris BisA53] Length = 1165 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 85/201 (42%), Positives = 117/201 (58%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S ++Q+ ASDPT S +VSANAG+GKTH+LVQRV+RLLLA P +LC+T TKAAAA Sbjct: 9 SDAIAKQVQASDPTASVFVSANAGAGKTHVLVQRVIRLLLAGVPPEKILCITFTKAAAAN 68 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ RV + W LSD L A I KP+ ++AR L LETPGGLKVQTIH Sbjct: 69 MAQRVFSTLGHWVTLSDGALDAAIRGAGIAKPDAKLRTRARELFACALETPGGLKVQTIH 128 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 A C ++QQFP EAN+ + F + DE +++E A L + E+ +A + Sbjct: 129 ALCTRLLQQFPFEANVPARFTVLDERDQAEMMERASLGVLLRAASAPDSEIGRALTTAMT 188 Query: 198 ISNDEDIETLISDIISNRTAL 218 + D ++ + +R + Sbjct: 189 SAADTTFRDVVREACMSRDSF 209 >gi|49473710|ref|YP_031752.1| ATP-dependent nuclease subunit A [Bartonella quintana str. Toulouse] gi|49239213|emb|CAF25532.1| ATP-dependent nuclease subunit A [Bartonella quintana str. Toulouse] Length = 1157 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 80/185 (43%), Positives = 119/185 (64%), Gaps = 6/185 (3%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+ P + WVSANAGSGKTH+L +RV+RLLL P+ +LCLT+TKAAAA M R+ Sbjct: 14 QATATHPKTNVWVSANAGSGKTHVLSERVIRLLLNGTSPARILCLTYTKAAAAVMQSRIF 73 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 +++W+ L D L +++++ K N + AR L LETPGGLK+QTIHAFCE++ Sbjct: 74 RTLSSWNELDDTQLQTILSRLENKPINAQKLIYARQLFARALETPGGLKIQTIHAFCESL 133 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + QF LEANI HF + D+ KKL++E+++ LA + + + A ++L++ N+ Sbjct: 134 LHQFMLEANIAGHFELLDDISRKKLLQESRRQLLA------HHDAQSALKQLLKVINEHT 187 Query: 204 IETLI 208 L+ Sbjct: 188 FNQLL 192 >gi|319407899|emb|CBI81553.1| ATP-dependent nuclease subunit A [Bartonella schoenbuchensis R1] Length = 1151 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 79/176 (44%), Positives = 116/176 (65%), Gaps = 2/176 (1%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A+ P + WVSANAGSGKTH+L +RV+RLLL P+ +LCLT+T AAA+ M R+ + Sbjct: 17 ATHPKTNVWVSANAGSGKTHVLSERVIRLLLNGTPPARILCLTYTNAAASVMQSRIFRTL 76 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 ++W+ L+DE L +++++ K N ++ AR L LETPGGLK+QTIHAFCEA++ Q Sbjct: 77 SSWNELNDEQLQTVLSQLENKPTNTQKLAHARKLFARALETPGGLKIQTIHAFCEALLHQ 136 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 FPLE+NI HF + D+ +L+ +A+ LA + + LK+ F I E + D+ Sbjct: 137 FPLESNIAGHFELLDDTNRTQLLHQARCQLLAHSHIQS--ALKELFKTISESTFDQ 190 >gi|304320182|ref|YP_003853825.1| helicase, UvrD/Rep family protein [Parvularcula bermudensis HTCC2503] gi|303299085|gb|ADM08684.1| helicase, UvrD/Rep family protein [Parvularcula bermudensis HTCC2503] Length = 1166 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 82/176 (46%), Positives = 117/176 (66%), Gaps = 6/176 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL--LANA----HPST 64 + +D +++T + Q SDP RSAW+SANAGSGKTH+L+ RV+RLL LA+ PS+ Sbjct: 17 NSALDPLAETTAIQQTVSDPRRSAWLSANAGSGKTHVLIGRVIRLLTDLADGGREIDPSS 76 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +LCLT T AAAAEM +R+ +I+ WS LSDE LS +T G+ P + + R L Sbjct: 77 ILCLTFTNAAAAEMKNRLFDILGEWSLLSDEALSDALTTRFGRSPAAPSLMRTRRLFARA 136 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 L+TPGGL+VQTIHAFCE++++QFPLEA + F++ D+ + LI + L ++ Sbjct: 137 LDTPGGLRVQTIHAFCESLLRQFPLEAGVMPGFSVLDDAEYAALIHRCRWQALRAL 192 >gi|170749778|ref|YP_001756038.1| double-strand break repair helicase AddA [Methylobacterium radiotolerans JCM 2831] gi|170656300|gb|ACB25355.1| double-strand break repair helicase AddA [Methylobacterium radiotolerans JCM 2831] Length = 1165 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 75/176 (42%), Positives = 111/176 (63%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T++ Q A+DP SAWVSANAG+GKT +L RV+RLLL A P +LCLT TKAAAA M+ Sbjct: 18 TRANQRRAADPRASAWVSANAGAGKTKVLTDRVVRLLLDEAPPGRILCLTFTKAAAANMA 77 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV ++ W L DE L+AE+ ++ G++ + AR L +ETPGGLK++T+HA Sbjct: 78 IRVFRLLGRWVTLDDETLAAELAELTGERAGPERLRLARRLFARAVETPGGLKIETLHAL 137 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 CE ++ FP EAN+ + F + DE ++++L + + LA + + + L A + Sbjct: 138 CERLLHMFPFEANVPARFVVLDEAKARELFDIEMANVLADAVANGDTPLSAALARV 193 >gi|316931471|ref|YP_004106453.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris DX-1] gi|315599185|gb|ADU41720.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris DX-1] Length = 1161 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 79/160 (49%), Positives = 105/160 (65%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 ++ ++ Q +ASDP+ S +VSANAGSGKTH+LVQRV+RLLL P +LC+T TKAAAA Sbjct: 7 NEARARQEIASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVSPERILCITFTKAAAAN 66 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ RV + W L DE LSA I K S +++AR L LETPGGLKVQTIH Sbjct: 67 MAERVFTTLGHWVKLDDEELSAAIRATGIKAVGPSLLAQARKLFACALETPGGLKVQTIH 126 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 A C ++QQFP EAN+ + F++ D+ +L++ A L Sbjct: 127 ALCTRLLQQFPFEANVPARFSVLDDRDQAELMQRASLDVL 166 >gi|91974684|ref|YP_567343.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5] gi|91681140|gb|ABE37442.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas palustris BisB5] Length = 1159 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 78/152 (51%), Positives = 102/152 (67%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 Q + Q+LASDP+ S +VSANAGSGKTH+LVQRV+RLLL P +LC+T TKAAAA M Sbjct: 10 QARERQILASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVPPERILCITFTKAAAANM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + RV + W L DE L+A I K S +++AR L LETPGGLKVQTIHA Sbjct: 70 AERVFTTLGRWVTLDDEALTAAIKATGIKSVGPSLLAQARKLFACALETPGGLKVQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 C ++QQFP EAN+ + F++ D+ +L++ Sbjct: 130 LCTRLLQQFPFEANVPARFSVLDDRDQAELMQ 161 >gi|39933154|ref|NP_945430.1| UvrD/REP helicase [Rhodopseudomonas palustris CGA009] gi|39652779|emb|CAE25518.1| Possible exonuclease V and helicase activity based on COG assignment [Rhodopseudomonas palustris CGA009] Length = 1161 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 79/160 (49%), Positives = 105/160 (65%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 ++ ++ Q +ASDP+ S +VSANAGSGKTH+LVQRV+RLLL P +LC+T TKAAAA Sbjct: 7 NEARARQEIASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVSPERILCITFTKAAAAN 66 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ RV + W L DE LSA I K S +++AR L LETPGGLKVQTIH Sbjct: 67 MAERVFTTLGHWVKLDDEELSAAIHATGVKTVGPSLLAQARKLFACALETPGGLKVQTIH 126 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 A C ++QQFP EAN+ + F++ D+ +L++ A L Sbjct: 127 ALCTRLLQQFPFEANVPARFSVLDDRDQAELMQRASLDVL 166 >gi|192288510|ref|YP_001989115.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris TIE-1] gi|192282259|gb|ACE98639.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris TIE-1] Length = 1161 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 79/160 (49%), Positives = 105/160 (65%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 ++ ++ Q +ASDP+ S +VSANAGSGKTH+LVQRV+RLLL P +LC+T TKAAAA Sbjct: 7 NEARARQEIASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVSPERILCITFTKAAAAN 66 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ RV + W L DE LSA I K S +++AR L LETPGGLKVQTIH Sbjct: 67 MAERVFTTLGHWVKLDDEELSAAIHATGVKTVGPSLLAQARKLFACALETPGGLKVQTIH 126 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 A C ++QQFP EAN+ + F++ D+ +L++ A L Sbjct: 127 ALCTRLLQQFPFEANVPARFSVLDDRDQAELMQRASLDVL 166 >gi|49474856|ref|YP_032897.1| ATP-dependent nuclease subunit A [Bartonella henselae str. Houston-1] gi|49237661|emb|CAF26843.1| ATP-dependent nuclease subunit A [Bartonella henselae str. Houston-1] Length = 1160 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 74/154 (48%), Positives = 104/154 (67%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+ P + WVSANAGSGKTH+L +RV+RLLL P+ +LCLT+TKAAAA M R+ Sbjct: 14 QATATHPKTNVWVSANAGSGKTHVLSERVIRLLLNGTPPARILCLTYTKAAAAVMQSRIF 73 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 +++W+ L D L +++++ K ++ AR L LETPGGLK+QTIHAFCE++ Sbjct: 74 RTLSSWNELDDTQLQQTLSQLENKPITAQKLTYARQLFARALETPGGLKIQTIHAFCESL 133 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 + F LEANI HF + D+ KKL++EA++ L Sbjct: 134 LHHFMLEANIAGHFELVDDISRKKLLQEARRQLL 167 >gi|144899270|emb|CAM76134.1| UvrD/REP helicase [Magnetospirillum gryphiswaldense MSR-1] Length = 1146 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 79/204 (38%), Positives = 125/204 (61%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +I + + Q A+DPT S WV+A+AG+GKT +L RVL LLLA P LLCLT TKAAA Sbjct: 1 MIVEASNRQRQAADPTASVWVAASAGTGKTKVLTDRVLNLLLAGNAPHKLLCLTFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEMS+R+ + W+ D L +T++ G+ P + +AR L +L+ PGG+ ++T Sbjct: 61 AEMSNRINAKLATWAVADDASLDQTLTELLGRPPTPPETIRARRLFAQVLDAPGGMHMET 120 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IHAFC++++++FPLEA I HF + D+ + +L++EAK+ L + L A ++ Sbjct: 121 IHAFCQSLLRRFPLEAGIAPHFQVMDDRDAGELLDEAKEEVLTHARHGADAHLAAALDQV 180 Query: 196 LEISNDEDIETLISDIISNRTALK 219 ++ L++++ S+R LK Sbjct: 181 TRHVHETGFPDLLAELASDRGRLK 204 >gi|27375863|ref|NP_767392.1| helicase 2 [Bradyrhizobium japonicum USDA 110] gi|27349001|dbj|BAC46017.1| bll0752 [Bradyrhizobium japonicum USDA 110] Length = 1180 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 83/197 (42%), Positives = 113/197 (57%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 + ++ Q ASDPT SA+VSANAGSGKTH+LVQRV+RLLL+ P +LC+T TKAAAA M Sbjct: 22 EVRARQARASDPTASAFVSANAGSGKTHVLVQRVIRLLLSGVPPEKILCITFTKAAAANM 81 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + RV + W L D L A I + P+ +AR L LETPGGLKVQTIHA Sbjct: 82 AERVFTTLGHWVTLDDIALDAAIRAVGIPHPSAKLRREARKLFACALETPGGLKVQTIHA 141 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++QQFP EAN+ + F++ DE ++E A L D +A + Sbjct: 142 LCTRLLQQFPFEANVPARFSVIDERDQTDMMERANLKVLLEAARDPETVTGRALLTAMAS 201 Query: 199 SNDEDIETLISDIISNR 215 + D + ++ + +R Sbjct: 202 AADVTFKEVVREACLSR 218 >gi|170738831|ref|YP_001767486.1| double-strand break repair helicase AddA [Methylobacterium sp. 4-46] gi|168193105|gb|ACA15052.1| double-strand break repair helicase AddA [Methylobacterium sp. 4-46] Length = 1157 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 82/205 (40%), Positives = 126/205 (61%), Gaps = 2/205 (0%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 +D ++QT Q A+DP SAWVSANAG+GKT +L RV+RLLL A P+ +LCLT TKA Sbjct: 8 VDAVTQTA--QRRAADPRASAWVSANAGAGKTKVLTDRVVRLLLHGAPPAKILCLTFTKA 65 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAA M+ RV E + W L +E L AE+T ++G++P+ + + +AR L +ETPGGLK+ Sbjct: 66 AAANMAIRVFERLGRWVTLPEEALRAELTALEGERPDPATLRRARRLFARAVETPGGLKI 125 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 +T+HA CE ++ P EAN+ + F + DE Q+++ ++ + LA + +L +A Sbjct: 126 ETLHALCERLLHLVPFEANVPARFVVLDEAQTREAVDRTIDNVLADAVDGTRPDLAQALA 185 Query: 194 EILEISNDEDIETLISDIISNRTAL 218 + + E + I + + R L Sbjct: 186 RVAPEAAGEALRRAIGEAVRARAVL 210 >gi|86747755|ref|YP_484251.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2] gi|86570783|gb|ABD05340.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas palustris HaA2] Length = 1161 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 77/152 (50%), Positives = 101/152 (66%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 Q + Q+LASDP+ S +VSANAGSGKTH+LVQRV+RLLL P +LC+T TKAAAA M Sbjct: 10 QARERQILASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVPPERILCITFTKAAAANM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + RV + W L D L+A I K S +++AR L LETPGGLKVQTIHA Sbjct: 70 AERVFTTLGRWVTLDDAALTAAIKATGIKSVGPSLLAQARKLFACALETPGGLKVQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 C ++QQFP EAN+ + F++ D+ +L++ Sbjct: 130 LCTRLLQQFPFEANVPARFSVLDDRDQAELMQ 161 >gi|302384281|ref|YP_003820104.1| double-strand break repair helicase AddA [Brevundimonas subvibrioides ATCC 15264] gi|302194909|gb|ADL02481.1| double-strand break repair helicase AddA [Brevundimonas subvibrioides ATCC 15264] Length = 1160 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 78/198 (39%), Positives = 125/198 (63%), Gaps = 3/198 (1%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A+DP +S +V+ANAGSGKT LV RV RLLL + P +LC+T+TKAAAAEM R+ Sbjct: 15 QIAAADPRQSVFVTANAGSGKTSTLVDRVARLLLEDVSPGEILCVTYTKAAAAEMQARLF 74 Query: 84 EIITAWSHLSDEILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGLKVQTIHAFC 140 + + AW+ + D L A + + G+ +K+D+S AR L L+TPGGLK+QT+HAFC Sbjct: 75 DRLGAWAVMDDATLEASLADLDGRAATILSKTDLSNARRLFAKALDTPGGLKIQTLHAFC 134 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 E ++++FPLEA +T F + +++ + L EA++ + + + E+ +A+ + Sbjct: 135 EKLLRRFPLEAGVTPGFTVLEDQAATALSHEAREDLARRALGNGDGEIGRAYAHFAVELD 194 Query: 201 DEDIETLISDIISNRTAL 218 + E L++ I ++R L Sbjct: 195 FKSFEGLLARIEADRARL 212 >gi|92115690|ref|YP_575419.1| UvrD/REP helicase [Nitrobacter hamburgensis X14] gi|91798584|gb|ABE60959.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrobacter hamburgensis X14] Length = 1162 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 83/192 (43%), Positives = 114/192 (59%), Gaps = 4/192 (2%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 + Q ASDP S +VSANAGSGKTH+LVQRV+RLLL P+ +LC+T TKAAAA MS R Sbjct: 13 ARQQRASDPATSVFVSANAGSGKTHVLVQRVIRLLLNGVDPARILCITFTKAAAANMSER 72 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + W L DE L+A + +P+ +AR L LETPGGLKVQTIHA C Sbjct: 73 VFSTLGHWVTLDDEALNAALRDTGIAQPDAWSRQRARKLFAAALETPGGLKVQTIHALCT 132 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 ++QQFP EA + + F++ DE ++E A S+MLD ++ L+ + Sbjct: 133 RLLQQFPFEARVPARFSVLDERDQTGMMERAS----ISVMLDASQNPDSPAGRALQYAMG 188 Query: 202 EDIETLISDIIS 213 +T + D+++ Sbjct: 189 AAADTTLRDVVN 200 >gi|220921602|ref|YP_002496903.1| double-strand break repair helicase AddA [Methylobacterium nodulans ORS 2060] gi|219946208|gb|ACL56600.1| double-strand break repair helicase AddA [Methylobacterium nodulans ORS 2060] Length = 1157 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 81/199 (40%), Positives = 124/199 (62%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T++ Q A+DP SAWVSANAG+GKT +L RV+RLLL A PS +LCLT TKAAAA M+ Sbjct: 12 TRTAQRRAADPCASAWVSANAGAGKTKVLTDRVVRLLLHGAAPSKILCLTFTKAAAANMA 71 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV E + W L E L AE+T+++G++P+ + + +AR L +ETPGGLK++T+HA Sbjct: 72 IRVFERLGRWVTLDAEALRAELTELEGERPDAATLRRARRLFARAVETPGGLKIETLHAL 131 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 CE ++ P EAN+ + F + DE Q+++ ++ + LA + + +L A + + Sbjct: 132 CERLLHLVPFEANVPARFVVLDEAQTREAVDRTIDNVLADAVDGTHPDLAGALGLVAPEA 191 Query: 200 NDEDIETLISDIISNRTAL 218 E + I + + R+ L Sbjct: 192 AGETLRRAIGEAVRARSLL 210 >gi|6626267|gb|AAF19532.1| putative helicase 2 [Bradyrhizobium japonicum] Length = 591 Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 77/159 (48%), Positives = 100/159 (62%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 + ++ Q +ASDP SA+VSANAGSGKTH+LVQRV+RLLL+ P +LC+T TKAAAA M Sbjct: 11 EVRARQAVASDPAASAFVSANAGSGKTHVLVQRVIRLLLSGVPPEKILCITFTKAAAANM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + RV + W L D L A I + P+ +A L LETPGGLKVQTIHA Sbjct: 71 AERVFTTLGHWVTLDDIALDAAIRAVGIPHPSAKLRREAERLFACALETPGGLKVQTIHA 130 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 C ++QQFP EAN+ + F++ DE ++E A L Sbjct: 131 LCTRLLQQFPFEANVPARFSVIDERDQTDMMERANLKVL 169 >gi|148251712|ref|YP_001236297.1| DNA helicase/exodeoxyribonuclease V subunit A [Bradyrhizobium sp. BTAi1] gi|146403885|gb|ABQ32391.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bradyrhizobium sp. BTAi1] Length = 1156 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 78/157 (49%), Positives = 100/157 (63%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 + Q AS+P SA+VSANAGSGKTH+LVQRV+RLLL P +LC+T TKAAAA M+ Sbjct: 12 RDAQTRASNPAASAFVSANAGSGKTHVLVQRVIRLLLDGVPPEKILCITFTKAAAANMAE 71 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 RV + W L DE L + I P+K + AR L + LETPGGLKVQTIHA C Sbjct: 72 RVFSTLGHWVTLDDEALDSAIKSTGIPTPDKKLRASARKLFASALETPGGLKVQTIHALC 131 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 ++QQFP EAN+ + F++ DE +++E A L Sbjct: 132 TRLLQQFPFEANVPARFSVLDERDQTEMMERANLKVL 168 >gi|329891017|ref|ZP_08269360.1| double-strand break repair helicase AddA [Brevundimonas diminuta ATCC 11568] gi|328846318|gb|EGF95882.1| double-strand break repair helicase AddA [Brevundimonas diminuta ATCC 11568] Length = 1119 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 76/156 (48%), Positives = 105/156 (67%), Gaps = 3/156 (1%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 + Q A+DP RS +V+ANAGSGKT LV RV RLLL A PS +LC+T+TKAAAAEM R Sbjct: 10 TPQSRAADPARSVFVTANAGSGKTSTLVNRVARLLLGGAAPSAILCVTYTKAAAAEMQAR 69 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGLKVQTIHA 138 + E + W+ + D LSAE+ K+ P N + +S+AR L LETPGGLK+QTIHA Sbjct: 70 LFETLGKWAVMDDGELSAELAKLDDSDPAALNPARLSEARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 FCE ++++FP+EA ++ F + + E + L A++ Sbjct: 130 FCEKLLRRFPIEAGVSPRFTVLENEAAIALSHAARE 165 >gi|182679138|ref|YP_001833284.1| double-strand break repair helicase AddA [Beijerinckia indica subsp. indica ATCC 9039] gi|182635021|gb|ACB95795.1| double-strand break repair helicase AddA [Beijerinckia indica subsp. indica ATCC 9039] Length = 1164 Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 87/199 (43%), Positives = 121/199 (60%), Gaps = 2/199 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T Q ASDP S WVSA+AGSGKTH+L QRV+R+LL P+ +LCLT TKAAAA M+ Sbjct: 8 TLERQKKASDPATSIWVSAHAGSGKTHVLAQRVIRILLRGVPPAKILCLTFTKAAAANMA 67 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV + + W+ L D L EI P +D+ AR L +ETPGGLK+QT+HAF Sbjct: 68 ARVFDRLALWTRLDDATLRQEIIATGAPAPEAADLLLARKLFARTVETPGGLKIQTLHAF 127 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 CE ++ FP EAN+ S F++ +EE+ K+L E+A+ + L + L+ A + E Sbjct: 128 CEKLLHLFPFEANVPSRFSVVEEERQKELFEQARHTILHEAE-GKDHPLRGALALLTESC 186 Query: 200 NDEDIETLISDIISNRTAL 218 + + E LI + ++ R AL Sbjct: 187 SSDRFENLIKEAMA-RGAL 204 >gi|83313261|ref|YP_423525.1| ATP-dependent exoDNAse beta subunit [Magnetospirillum magneticum AMB-1] gi|82948102|dbj|BAE52966.1| ATP-dependent exoDNAse beta subunit [Magnetospirillum magneticum AMB-1] Length = 1154 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 76/199 (38%), Positives = 123/199 (61%), Gaps = 1/199 (0%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+DPT S WV+A+AG+GKT +L RVL LLLA P +LCLT TKAAAAEMS+R+ Sbjct: 15 QRRAADPTASVWVAASAGTGKTKVLTDRVLTLLLAGTPPHKILCLTFTKAAAAEMSNRIA 74 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + W+ D L+ ++ ++ G+ P+ +M+ AR L +L+ PGG+ ++TIHAFC+++ Sbjct: 75 GRLGQWATAHDSDLADDLGRLLGRAPSPGEMTGARRLFAALLDAPGGMHMETIHAFCQSL 134 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 +++FPLEA I HF + D+ + +L+E AK L+ + + L A + ++ Sbjct: 135 LRRFPLEAGIAPHFQVMDDRDAGELLEAAKLEILSQARMGDG-ALGGALALVTSRVHETA 193 Query: 204 IETLISDIISNRTALKLIF 222 L+ ++ + R L+ +F Sbjct: 194 FPELMGELTAERGRLERLF 212 >gi|114769726|ref|ZP_01447336.1| ATP-dependent DNA helicase, UvrD/Rep family protein [alpha proteobacterium HTCC2255] gi|114549431|gb|EAU52313.1| ATP-dependent DNA helicase, UvrD/Rep family protein [alpha proteobacterium HTCC2255] Length = 1125 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 72/148 (48%), Positives = 103/148 (69%), Gaps = 4/148 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A++P ++ WVSANAGSGKT +L RV RLLL N P +LCLT+TKAAAAEM +R+ Sbjct: 10 QIYAANPIKNTWVSANAGSGKTRVLTDRVARLLLNNTDPQKILCLTYTKAAAAEMQNRLF 69 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLKVQTIHAFC 140 + + W+ L DE L E+ + G+ N + +AR L LETPGGLK+QTIH+FC Sbjct: 70 DSLGKWAMLPDEELRTELKSL-GENENTLSPDKIKQARTLFAAALETPGGLKIQTIHSFC 128 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKL 168 +A++++FPLEA ++ F + +E Q+K+L Sbjct: 129 DALLRRFPLEAGVSPQFNMLEERQAKQL 156 >gi|23016111|ref|ZP_00055871.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Magnetospirillum magnetotacticum MS-1] Length = 1154 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 72/168 (42%), Positives = 109/168 (64%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 +E L Q A+DPT S WV+A+AG+GKT +L RVL LLLA P +LCLT Sbjct: 2 TEVSALSQDADRRQRRAADPTASVWVAASAGTGKTKVLTDRVLTLLLAGTPPHKILCLTF 61 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 TKAAAAEMS+R+ + W+ D+ L+ ++ ++ G+ P +M AR L ++L+ PGG Sbjct: 62 TKAAAAEMSNRIAGRLGQWATARDQDLAGDLERLLGRPPAVGEMIGARRLFASLLDAPGG 121 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 + ++TIHAFC++++++FPLEA I HF + D+ + +L+E AK L+ Sbjct: 122 MHMETIHAFCQSLLRRFPLEAGIAPHFQVMDDRDAGELLESAKLEVLS 169 >gi|75674249|ref|YP_316670.1| UvrD/REP helicase [Nitrobacter winogradskyi Nb-255] gi|74419119|gb|ABA03318.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrobacter winogradskyi Nb-255] Length = 1202 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 77/166 (46%), Positives = 105/166 (63%), Gaps = 4/166 (2%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 + Q ASDP S +VSANAGSGKTH+LVQRV+RLLL + P+ +LC+T TKAAAA M+ R Sbjct: 14 ARQQRASDPATSVFVSANAGSGKTHVLVQRVIRLLLNDVDPARILCITFTKAAAANMAER 73 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + W L DE L+ + + +P +AR L + LETPGGLKVQTIHA C Sbjct: 74 VFSTLGHWVTLDDEALNGALRDVGIAQPGARWRERARKLFASALETPGGLKVQTIHALCT 133 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 ++QQFP EA + + F + DE +++E A +MLD +++ Sbjct: 134 RLLQQFPFEAEVPARFTVLDERDQTEMMERAS----LKVMLDASQD 175 >gi|299133347|ref|ZP_07026542.1| double-strand break repair helicase AddA [Afipia sp. 1NLS2] gi|298593484|gb|EFI53684.1| double-strand break repair helicase AddA [Afipia sp. 1NLS2] Length = 1163 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 78/157 (49%), Positives = 104/157 (66%), Gaps = 1/157 (0%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 + QL AS P SA+V+ANAGSGKT++LV RV+RLLL + P +LC+T TKAAAA M+ Sbjct: 13 REAQLRASHPQSSAFVAANAGSGKTYVLVNRVIRLLLDDVAPEKILCITFTKAAAANMAQ 72 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 RV + + W LSD+ L A I + G + + ++AR L LETPGGLKVQTIHA C Sbjct: 73 RVFDTLGKWVALSDDELDAAI-RNSGAQVTRDVRARARKLFACALETPGGLKVQTIHALC 131 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 ++QQFP EAN+ +HFA+ DE ++E A + L Sbjct: 132 TRLLQQFPFEANVPAHFAVLDERDQTDMMERANLAVL 168 >gi|85714148|ref|ZP_01045137.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A] gi|85699274|gb|EAQ37142.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A] Length = 1176 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 82/192 (42%), Positives = 114/192 (59%), Gaps = 4/192 (2%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 + Q ASDP S +VSANAGSGKTH+LVQRV+RLLL + P+ +LC+T TKAAAA M+ R Sbjct: 25 ARQQRASDPATSVFVSANAGSGKTHVLVQRVIRLLLNDVPPARILCITFTKAAAANMAER 84 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + W L D L+A + + +P+ +AR L + LETPGGLKVQTIHA C Sbjct: 85 VFSTLGHWITLDDGTLNAALRDVGIAQPDARWRERARKLFASALETPGGLKVQTIHALCT 144 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 ++QQFP EA + + FA+ DE +++E A +MLD + L + Sbjct: 145 RLLQQFPFEAEVPARFAVLDERDQTEMMERAS----LKVMLDASRNPDSPAGRALRYAMG 200 Query: 202 EDIETLISDIIS 213 ++ + D+IS Sbjct: 201 AAADSTLRDVIS 212 >gi|197103666|ref|YP_002129043.1| helicase, UvrD/Rep family [Phenylobacterium zucineum HLK1] gi|196477086|gb|ACG76614.1| helicase, UvrD/Rep family [Phenylobacterium zucineum HLK1] Length = 1147 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 74/142 (52%), Positives = 101/142 (71%), Gaps = 3/142 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q +A+DP RSA+V+ANAGSGKT L+ RV RLLLA A P T+LC+T+TKAAAAEM R+ Sbjct: 11 QRIAADPGRSAFVTANAGSGKTKTLIDRVARLLLARAEPETILCVTYTKAAAAEMQRRLF 70 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFC 140 + + WS + D L+ E+ ++G+ D +S+AR L LETPGGLK+QTIHAFC Sbjct: 71 KRLGDWSVMPDGPLTEELAHLEGRPAAAYDDLRLSEARALFARALETPGGLKIQTIHAFC 130 Query: 141 EAIMQQFPLEANITSHFAIADE 162 E ++++FPLEA I+ F + D+ Sbjct: 131 EKLLRRFPLEAGISPGFRVMDD 152 >gi|114568640|ref|YP_755320.1| DNA helicase/exodeoxyribonuclease V A [Maricaulis maris MCS10] gi|114339102|gb|ABI64382.1| DNA helicase/exodeoxyribonuclease V, subunit A [Maricaulis maris MCS10] Length = 1183 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 79/201 (39%), Positives = 120/201 (59%), Gaps = 7/201 (3%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 D++ ++Q A+ P S +V ANAGSGKT +LV RV+ LLLA P T+LC+T+TKAA Sbjct: 9 DILKSASADQQRAARPEASVFVEANAGSGKTRVLVDRVINLLLAGHKPETILCVTYTKAA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM R+ + + WS DE+L+ E+ + + D ++AR L LETPGGLK+Q Sbjct: 69 AAEMKERLFKRLGDWSVTPDEVLAVELKALLDRDLKPGDANRARKLFAQALETPGGLKIQ 128 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TIHAFCE ++++FPLEA F D+ + K ++ A+++ L+ + +A Sbjct: 129 TIHAFCEGLLRRFPLEAGAPPGFDTLDDISAGKAMDAARRAVLSGLA-------PEAVNT 181 Query: 195 ILEISNDEDIETLISDIISNR 215 ++E + I T++ SNR Sbjct: 182 LIETGGPDAINTILRWARSNR 202 >gi|83594763|ref|YP_428515.1| UvrD/REP helicase [Rhodospirillum rubrum ATCC 11170] gi|83577677|gb|ABC24228.1| UvrD/REP helicase [Rhodospirillum rubrum ATCC 11170] Length = 1187 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 70/159 (44%), Positives = 103/159 (64%), Gaps = 5/159 (3%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+DP SAWV+A+AG+GKT +L RVLRLLLA P LLCLT TKAAAAEM++RV Sbjct: 24 QRRAADPLASAWVAASAGTGKTKVLTDRVLRLLLAGTPPQRLLCLTFTKAAAAEMANRVS 83 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDM-----SKARHLLITILETPGGLKVQTIHA 138 ++ W+ L +E L + + G P + +AR L +L+ PGGL++QTIH Sbjct: 84 AVLAGWATLPEEALRGRLASLLGSLPEGEEAIEALSGRARRLFAQVLDCPGGLRIQTIHG 143 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 FC+ ++++FPLEA + HF + D+ +++ L + A+ + L Sbjct: 144 FCQTLLRRFPLEAGVAPHFEVLDDREAQALHQSARDAVL 182 >gi|167648808|ref|YP_001686471.1| double-strand break repair helicase AddA [Caulobacter sp. K31] gi|167351238|gb|ABZ73973.1| double-strand break repair helicase AddA [Caulobacter sp. K31] Length = 1157 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 80/198 (40%), Positives = 122/198 (61%), Gaps = 4/198 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q +A+DP SA+V+ANAGSGKT L+ RV RLLLA + P +LC+T+TKAAAAEM R+ Sbjct: 5 QRIAADPAISAFVTANAGSGKTKTLIDRVARLLLAGSSPEAILCVTYTKAAAAEMQRRLF 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFC 140 E + W D L ++ ++G++P D +SKAR L LETPGGLK+QTIHAFC Sbjct: 65 ERLGEWCVTPDVKLREQLGALEGREPASFDHRELSKARGLFAKALETPGGLKIQTIHAFC 124 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 E ++++FPLEA ++ F + D+ S + + A + +A+ + D+++ +A+ + Sbjct: 125 EKLLRRFPLEAGVSPGFTVMDDSASAAIAQGALRQ-VATWVTDHDDAFAQAYARFSVALD 183 Query: 201 DEDIETLISDIISNRTAL 218 E + + S R A+ Sbjct: 184 FASFEAMFATFESQRGAI 201 >gi|221236588|ref|YP_002519025.1| ATP-dependent nuclease subunit A [Caulobacter crescentus NA1000] gi|220965761|gb|ACL97117.1| ATP-dependent nuclease subunit A [Caulobacter crescentus NA1000] Length = 1153 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 74/143 (51%), Positives = 100/143 (69%), Gaps = 3/143 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q +A+DPT SA+V+ANAGSGKT L+ RV RLLLA P +LC+T+TKAAAAEM R+ Sbjct: 5 QRIAADPTISAFVTANAGSGKTKTLIDRVARLLLAGVEPQAILCVTYTKAAAAEMQRRLF 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFC 140 + + WS SD L AE+ K+ G+ + D +S AR L LETPGGLK+QTIHAFC Sbjct: 65 DRLGKWSVTSDADLRAELVKLVGEADARYDAKSLSDARALFAKALETPGGLKIQTIHAFC 124 Query: 141 EAIMQQFPLEANITSHFAIADEE 163 E ++++FPLEA ++ F + D++ Sbjct: 125 EKLLRRFPLEAGVSPGFTVMDDQ 147 >gi|154247228|ref|YP_001418186.1| double-strand break repair helicase AddA [Xanthobacter autotrophicus Py2] gi|154161313|gb|ABS68529.1| Double-strand break repair helicase AddA [Xanthobacter autotrophicus Py2] Length = 1167 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 85/204 (41%), Positives = 119/204 (58%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 D S+ Q AS P SAWVSANAGSGKTH+L +RV+RLLLA P +LCLT+TKAA Sbjct: 16 DPKSEATRRQSEASHPAFSAWVSANAGSGKTHVLARRVIRLLLAGTPPGRILCLTYTKAA 75 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AA M++RVL I+ W L D L I G P+ + ++AR L LETPGGLK+Q Sbjct: 76 AANMANRVLAILGRWVRLPDAELDDAIRDTVGSPPDAALRARARRLFAAALETPGGLKIQ 135 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TIHAFC A++ +FP EA++ + F DE ++L+ + + + N L +A Sbjct: 136 TIHAFCGALLHRFPFEADVAAGFGELDEVGRQELMARIRADLVVAASRTPNALLGEALAR 195 Query: 195 ILEISNDEDIETLISDIISNRTAL 218 + E +D + L+ ++ R + Sbjct: 196 LTEDMSDSGLSGLLEAAVALRARI 219 >gi|146337257|ref|YP_001202305.1| helicase-exonuclease type V family protein AddA subunit [Bradyrhizobium sp. ORS278] gi|146190063|emb|CAL74055.1| putative helicase-exonuclease type V protein family, addA subunit [Bradyrhizobium sp. ORS278] Length = 1156 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 76/157 (48%), Positives = 98/157 (62%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 + Q AS+P SA+VSANAGSGKTH+LVQRV+RLLL P +LC+T TKAAAA M+ Sbjct: 12 RDAQTRASNPAASAFVSANAGSGKTHVLVQRVIRLLLDGVPPEKILCITFTKAAAANMAE 71 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 RV + W L D L + I +K + AR L + LETPGGLKVQTIHA C Sbjct: 72 RVFSTLGHWVTLDDGALDSAIKSTGILTSDKKLRASARKLFASALETPGGLKVQTIHALC 131 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 ++QQFP EAN+ + F++ DE +++E A L Sbjct: 132 TRLLQQFPFEANVPARFSVLDERDQTEMMERANLKVL 168 >gi|16127768|ref|NP_422332.1| UvrD/Rep family helicase [Caulobacter crescentus CB15] gi|13425272|gb|AAK25500.1| helicase, UvrD/Rep family [Caulobacter crescentus CB15] Length = 1203 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 73/143 (51%), Positives = 100/143 (69%), Gaps = 3/143 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q +A+DPT SA+V+ANAG+GKT L+ RV RLLLA P +LC+T+TKAAAAEM R+ Sbjct: 55 QRIAADPTISAFVTANAGAGKTKTLIDRVARLLLAGVEPQAILCVTYTKAAAAEMQRRLF 114 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFC 140 + + WS SD L AE+ K+ G+ + D +S AR L LETPGGLK+QTIHAFC Sbjct: 115 DRLGKWSVTSDADLRAELVKLVGEADARYDAKSLSDARALFAKALETPGGLKIQTIHAFC 174 Query: 141 EAIMQQFPLEANITSHFAIADEE 163 E ++++FPLEA ++ F + D++ Sbjct: 175 EKLLRRFPLEAGVSPGFTVMDDQ 197 >gi|295687598|ref|YP_003591291.1| double-strand break repair helicase AddA [Caulobacter segnis ATCC 21756] gi|295429501|gb|ADG08673.1| double-strand break repair helicase AddA [Caulobacter segnis ATCC 21756] Length = 1153 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 74/143 (51%), Positives = 100/143 (69%), Gaps = 3/143 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q +A+DP SA+V+ANAGSGKT L+ RV RLLLA P +LC+T+TKAAAAEM R+ Sbjct: 5 QRIAADPAISAFVTANAGSGKTKTLIDRVARLLLAKVPPEAILCVTYTKAAAAEMQRRLF 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFC 140 E + WS SD L AE+ K+ G+ + D +S+AR L LETPGGLK+QTIHAFC Sbjct: 65 ERLGKWSVTSDADLRAELAKLVGESDDIYDARRLSEARALFAQALETPGGLKIQTIHAFC 124 Query: 141 EAIMQQFPLEANITSHFAIADEE 163 E ++++FPLEA ++ F + D++ Sbjct: 125 EKLLRRFPLEAGVSPGFTVMDDQ 147 >gi|254420948|ref|ZP_05034672.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3] gi|196187125|gb|EDX82101.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3] Length = 1139 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 71/156 (45%), Positives = 103/156 (66%), Gaps = 3/156 (1%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 S Q++A+DP + +V+ANAGSGKT LV RV RLLL P +LC+T+TKAAAAEM R Sbjct: 4 SPQIVAADPRLTVFVTANAGSGKTTTLVNRVARLLLDQVDPGAILCVTYTKAAAAEMQAR 63 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHA 138 + + + W+ L D LS E+ ++ P D +S+AR L LETPGGLK+QTIHA Sbjct: 64 LFDQLGGWAVLDDAALSRELARLDDGDPQAMDHAALSRARKLFARALETPGGLKIQTIHA 123 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 FCE ++++FPLEA ++ F + +++ + L A++ Sbjct: 124 FCEKLLRRFPLEAGVSPRFTVLEDQAATALSHSARE 159 >gi|83859061|ref|ZP_00952582.1| helicase, UvrD/Rep family protein [Oceanicaulis alexandrii HTCC2633] gi|83852508|gb|EAP90361.1| helicase, UvrD/Rep family protein [Oceanicaulis alexandrii HTCC2633] Length = 1219 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 80/197 (40%), Positives = 119/197 (60%), Gaps = 5/197 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+DP+ S +V ANAGSGKT +LV RV RLLLA A P +LC+T TKAAA EM R+ Sbjct: 18 QATAADPSASVFVEANAGSGKTRVLVDRVARLLLAGARPDRILCVTFTKAAAGEMQARLF 77 Query: 84 EIITAWSHLSDEILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + WS L D+ L+ E+ + +G++P + +AR L LETPGGLK+QT+HAFCE Sbjct: 78 RKLGDWSTLPDDALTKELDALVTEGQRP---PLDEARRLFARALETPGGLKIQTLHAFCE 134 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 +++++FPLEA + F + D+ L EA ++ D E+ +A +++ S Sbjct: 135 SLLRRFPLEAGLPPGFEVQDDASGLALQTEALEALSGQAHRDPEGEIAQAIAALIDGSGA 194 Query: 202 EDIETLISDIISNRTAL 218 + + L + ++S R L Sbjct: 195 DALARLSAFVMSKRHEL 211 >gi|209883635|ref|YP_002287492.1| double-strand break repair helicase AddA [Oligotropha carboxidovorans OM5] gi|209871831|gb|ACI91627.1| double-strand break repair helicase AddA [Oligotropha carboxidovorans OM5] Length = 1161 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 79/157 (50%), Positives = 103/157 (65%), Gaps = 1/157 (0%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 + Q AS+P SA+V+ANAGSGKTH+LV RV+RLLLA+ P +LC+T TKAAAA M+ Sbjct: 13 RDAQARASNPEASAFVAANAGSGKTHVLVTRVIRLLLADVAPEKILCITFTKAAAANMAQ 72 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 RV E + W L D+ L A I + G + +AR L LETPGGLKVQTIHA C Sbjct: 73 RVFETLGRWVALDDDALDAAIRHV-GAPATREMRVRARKLFACALETPGGLKVQTIHALC 131 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 ++QQFP EAN+ +HFA+ DE +++E A + L Sbjct: 132 TRLLQQFPFEANVPAHFAVLDERDQTEMMERANLAVL 168 >gi|83950792|ref|ZP_00959525.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius nubinhibens ISM] gi|83838691|gb|EAP77987.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius nubinhibens ISM] Length = 1112 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 79/197 (40%), Positives = 122/197 (61%), Gaps = 10/197 (5%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A+ P S W+SANAGSGKT +L RV RLLLA+ +P +LCLT+TKAAA+EM +R+ Sbjct: 8 QIDAARPDFSTWLSANAGSGKTRVLTDRVARLLLADVNPQNILCLTYTKAAASEMQNRLF 67 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCE 141 + + AW+ L D L E+ K+ G D ++KAR L T +ETPGGL++QTIH+FC Sbjct: 68 QRLGAWAMLPDADLREELRKL-GVDAVIDDLPLTKARRLFATAIETPGGLRIQTIHSFCA 126 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 A++++FPLEA +T F D+ + L + + I L + L + +++ + Sbjct: 127 ALLRRFPLEAGVTPQFTEMDDRTAATL----RSDVVEEIALGPDAALLR---DLVSYYSG 179 Query: 202 EDIETLISDIISNRTAL 218 +D++ L+ +I+ R L Sbjct: 180 DDLDKLLREILGKRDQL 196 >gi|294675594|ref|YP_003576209.1| UvrD/REP helicase family protein [Rhodobacter capsulatus SB 1003] gi|294474414|gb|ADE83802.1| UvrD/REP helicase family protein [Rhodobacter capsulatus SB 1003] Length = 1121 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 71/149 (47%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A+DP S W++ANAGSGKT +L RV RLLLA P +LCLT+TKAAAAEM +R+L Sbjct: 11 QVQAADPAASTWLAANAGSGKTKVLTDRVARLLLAGTEPQKVLCLTYTKAAAAEMQNRLL 70 Query: 84 EIITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + + W+ L D L A++ + P + +++AR L +ETPGGLK+QTIHAFC A Sbjct: 71 KRLGDWAMLPDADLRAQLAALGECGPLDAESLARARRLFAQAIETPGGLKIQTIHAFCGA 130 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEE 171 ++++FPLEA ++ FA D+ + ++ EE Sbjct: 131 LLRRFPLEAGVSHGFAEIDDRTAARMREE 159 >gi|254294694|ref|YP_003060717.1| double-strand break repair helicase AddA [Hirschia baltica ATCC 49814] gi|254043225|gb|ACT60020.1| double-strand break repair helicase AddA [Hirschia baltica ATCC 49814] Length = 1198 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 67/150 (44%), Positives = 99/150 (66%), Gaps = 3/150 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+ PT SAWVSANAGSGKT +L+ RV RLLL P ++C+T+TKAAA+EM R+ Sbjct: 17 QFDAATPTHSAWVSANAGSGKTKVLIDRVARLLLNGVQPDAIMCVTYTKAAASEMQGRLF 76 Query: 84 EIITAWSHLSDEILSAEITKIQG---KKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 + + W D+ L+ E+ ++Q ++ + ++ KAR L LETPGGL+++TIHAFC Sbjct: 77 KRLGGWCVADDKALAKELAELQARDIREYTQEELGKARELFALALETPGGLRIETIHAFC 136 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIE 170 ++++FPLEAN+ F D+ + +L E Sbjct: 137 GRLLRRFPLEANVAPGFKELDDNDASRLWE 166 >gi|126734388|ref|ZP_01750135.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. CCS2] gi|126717254|gb|EBA14118.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. CCS2] Length = 1112 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 68/135 (50%), Positives = 96/135 (71%), Gaps = 1/135 (0%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A+DP S W+SANAGSGKT +L RV RLLL P +LCLT+TKAAAAEM +R+ Sbjct: 10 QVDAADPRISTWLSANAGSGKTRVLTDRVARLLLEEVSPQNILCLTYTKAAAAEMQNRLF 69 Query: 84 EIITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + + AW+ +SD LSAE+ + ++ + S +S+AR L +ETPGGLK+QTIH+FC Sbjct: 70 QRLGAWAMMSDTELSAELLALGVDRQIDSSQLSQARTLFARAIETPGGLKIQTIHSFCAG 129 Query: 143 IMQQFPLEANITSHF 157 ++++FPLEA ++ F Sbjct: 130 VLRRFPLEAQVSPQF 144 >gi|296532162|ref|ZP_06894922.1| ATP-dependent exoDNAse beta subunit [Roseomonas cervicalis ATCC 49957] gi|296267510|gb|EFH13375.1| ATP-dependent exoDNAse beta subunit [Roseomonas cervicalis ATCC 49957] Length = 943 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 80/209 (38%), Positives = 125/209 (59%), Gaps = 6/209 (2%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69 SET+ + ++ Q ASDP SAWV A+AGSGKT +L RVLRLLL A P +LCLT Sbjct: 20 SETLTPRAAAQAAQRRASDPRASAWVGASAGSGKTKVLTDRVLRLLLRPGAKPGRILCLT 79 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 TKAAAAEM+ R+ + + W+ D LS + + G+KP+ + +AR L +LE PG Sbjct: 80 FTKAAAAEMATRLAKRLGEWAVAEDTALSDSLLSLTGEKPDAALRRRARGLFAEVLEQPG 139 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+++ TIH+FC+++++ FPLEA + FA+ +E + +++ E+++ LAS L + Sbjct: 140 GMRISTIHSFCQSLLRGFPLEAGLPPQFALIEEADAAEMLAESRELALASGQLP-----Q 194 Query: 190 KAFYEILEISNDEDIETLISDIISNRTAL 218 A + + + ED + ++ R L Sbjct: 195 AAIEAMAGLGSPEDFAQTLQSLVKERERL 223 >gi|163797153|ref|ZP_02191108.1| ATP-dependent exoDNAse beta subunit [alpha proteobacterium BAL199] gi|159177669|gb|EDP62222.1| ATP-dependent exoDNAse beta subunit [alpha proteobacterium BAL199] Length = 1152 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 83/206 (40%), Positives = 127/206 (61%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 T +++ Q LA+DPT S WV+A+AGSGKT +L R+L LLL A P LLCLT+TK Sbjct: 3 TASVLAAANERQRLAADPTASVWVAASAGSGKTKVLTDRLLNLLLDGASPERLLCLTYTK 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAAEM+ R+ + AW+ + + L ++ ++ G P ++ ++KAR L +L+ PGGLK Sbjct: 63 AAAAEMATRLQSRLAAWTVVDEPSLVDDLARLSGATPTQARLAKARRLFAEVLDAPGGLK 122 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 +QTIHAF ++++ +FPLEA + +F +AD+ S L+ EA+ + LA + +L A Sbjct: 123 IQTIHAFAQSLLGRFPLEAGVPPNFRLADDRASAALLAEAEAAMLARARSATDTDLATAL 182 Query: 193 YEILEISNDEDIETLISDIISNRTAL 218 + E +N E L+ + RT L Sbjct: 183 SIVTERANQEQFRELMRAALGARTRL 208 >gi|89067401|ref|ZP_01154914.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola granulosus HTCC2516] gi|89046970|gb|EAR53024.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola granulosus HTCC2516] Length = 1119 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 79/202 (39%), Positives = 116/202 (57%), Gaps = 12/202 (5%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 ++ Q+ A+DP S W+SANAGSGKT +L +RV RLLL P +LCLT TKAAAAE Sbjct: 5 NEATRAQVEAADPANSTWLSANAGSGKTRVLTERVARLLLGGVDPQNILCLTFTKAAAAE 64 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M +R+ + +W+ + L E++++ +P + D +AR L +ETPGGLK+QTIH Sbjct: 65 MQNRLFHRLGSWAMMEAGKLREELSELGAAQPEELD--EARRLFARAIETPGGLKIQTIH 122 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE-IL 196 AFC ++++FPLEA I+ F +E+ + L + +LD E A + I Sbjct: 123 AFCAGVLRRFPLEAGISPRFT---------EMEDRAAALLRAEILDELAEADPAAVDGIA 173 Query: 197 EISNDEDIETLISDIISNRTAL 218 + DI L +I +NR A Sbjct: 174 RLYTGADIADLTGEITANRAAF 195 >gi|315497132|ref|YP_004085936.1| double-strand break repair helicase adda [Asticcacaulis excentricus CB 48] gi|315415144|gb|ADU11785.1| double-strand break repair helicase AddA [Asticcacaulis excentricus CB 48] Length = 1168 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 73/154 (47%), Positives = 101/154 (65%), Gaps = 3/154 (1%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+DP S +++ANAGSGKT LV RV RLLL A P +LC+T+TKAAAAEM R+ Sbjct: 4 QNAAADPEVSCFLTANAGSGKTSTLVNRVARLLLRGAKPEHILCVTYTKAAAAEMQGRLY 63 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 E + W+ D L+ E+ KI N D++ AR L LETPGGLK+QTIHAFCE + Sbjct: 64 ERLGGWAVAEDAALAEELRKID---ENPDDLATARALFAKALETPGGLKIQTIHAFCEKL 120 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 +++FPLEA ++ F + D+ ++ L ++A + L Sbjct: 121 LRRFPLEAGLSPSFQVLDDLVARDLAQKALEGLL 154 >gi|300023817|ref|YP_003756428.1| double-strand break repair helicase AddA [Hyphomicrobium denitrificans ATCC 51888] gi|299525638|gb|ADJ24107.1| double-strand break repair helicase AddA [Hyphomicrobium denitrificans ATCC 51888] Length = 1196 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 88/205 (42%), Positives = 119/205 (58%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L ++T Q A+DP SAWV ANAG+GKTH+L RVLRLLLA P +LCLT+TKAAA Sbjct: 13 LRAETDLHQGNAADPLASAWVRANAGTGKTHVLTLRVLRLLLAGTSPEKILCLTYTKAAA 72 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEMS RV + + W ++ L +I K+ G + + AR L +ETPGGLKVQT Sbjct: 73 AEMSRRVFDRLAGWVTADEKELEKDIRKVTGGDVSVETLQLARRLFANAIETPGGLKVQT 132 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IHAF E ++Q+FPLEA + F I D+ + L A + TL + L +A I Sbjct: 133 IHAFAERLLQRFPLEAGVPPDFKILDDAAAGDLKARAIEQTLLDATSEPETPLGRALDVI 192 Query: 196 LEISNDEDIETLISDIISNRTALKL 220 + + D + LIS+ + R L + Sbjct: 193 VRYATDTQFDKLISNAVEERRWLDV 217 >gi|254453452|ref|ZP_05066889.1| double-strand break repair helicase AddA [Octadecabacter antarcticus 238] gi|198267858|gb|EDY92128.1| double-strand break repair helicase AddA [Octadecabacter antarcticus 238] Length = 1128 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 1/149 (0%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A+DPTRS W+SANAGSGKT +L RV RLLLA P +LCLT+TKAAA+EM +R+ Sbjct: 10 QIEAADPTRSTWLSANAGSGKTRVLTDRVARLLLAGTRPENVLCLTYTKAAASEMQNRLF 69 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTIHAFCEA 142 + + W+ ++ L ++ ++ D +S AR L + +ETPGGLK+QTIH+FC Sbjct: 70 QRLGEWAMMAKPALHKQLVELGTDVAIDDDYLSNARTLFASAIETPGGLKIQTIHSFCAG 129 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEE 171 ++++FPLEA ++ F ++ ++ L EE Sbjct: 130 VLRRFPLEAEVSPQFKEMEDRDAQLLREE 158 >gi|84685773|ref|ZP_01013669.1| Helicase, UvrD/Rep family protein [Maritimibacter alkaliphilus HTCC2654] gi|84665866|gb|EAQ12340.1| Helicase, UvrD/Rep family protein [Rhodobacterales bacterium HTCC2654] Length = 1119 Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 69/153 (45%), Positives = 98/153 (64%), Gaps = 2/153 (1%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 + Q+ A+DP + W+SANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM Sbjct: 5 EATQRQVEAADPGGNTWLSANAGSGKTRVLTDRVARLLLNGVEPGHILCLTYTKAAASEM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +R+ + + AW+ L D+ L AE+ + D+ KAR L +E PGGLK+QTIHA Sbjct: 65 QNRLFQRLGAWAMLGDDDLRAELDAL--GVMGAPDLRKARRLFARAIEAPGGLKIQTIHA 122 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 FC I+++FP+EA ++ F D+ ++ L EE Sbjct: 123 FCATILRRFPMEAGVSPDFKEMDDRTAQLLQEE 155 >gi|126724545|ref|ZP_01740388.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Rhodobacterales bacterium HTCC2150] gi|126705709|gb|EBA04799.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Rhodobacterales bacterium HTCC2150] Length = 1122 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 80/201 (39%), Positives = 120/201 (59%), Gaps = 17/201 (8%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A+ P S W+SANAGSGKT +L RV RLLL P +LCLT+TKAAA EM +R+ Sbjct: 25 QVRAAAPMESTWLSANAGSGKTRVLTDRVARLLLEGVPPQKVLCLTYTKAAATEMQNRLF 84 Query: 84 EIITAWSHLSDEILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGLKVQTIHAFC 140 + W+ L+D L + ++ G +P K AR L +ETPGGLK+QTIH+FC Sbjct: 85 SRLGEWAMLADNELRMALDEL-GVEPIENTKEARRNARTLFARAIETPGGLKIQTIHSFC 143 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIE---EAKKSTLASIMLDNNEELKKAFYEILE 197 A++++FPLEA ++ F D+ +K+L E E + +++LD+ F + L Sbjct: 144 AALLRRFPLEAGVSPQFREMDDRAAKRLREDVLEELANAPETVVLDD-------FVKHL- 195 Query: 198 ISNDEDIETLISDIISNRTAL 218 +D+D +++ +II +R AL Sbjct: 196 --SDDDPASILMEIIRHRDAL 214 >gi|119385518|ref|YP_916574.1| UvrD-like DNA helicase domain-containing protein [Paracoccus denitrificans PD1222] gi|119375285|gb|ABL70878.1| UvrD-like DNA helicase, C-terminal domain [Paracoccus denitrificans PD1222] Length = 1124 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 69/163 (42%), Positives = 103/163 (63%), Gaps = 6/163 (3%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 ++ + Q+ A+DP RS W++ANAGSGKT +L RV RLLLA P +LCLT+TKAAA Sbjct: 1 MMDEATLAQVRAADPHRSTWLTANAGSGKTRVLTDRVARLLLAGTAPERILCLTYTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM +R+L + W+ L + L AE+ ++ + D+ AR L +ETPGGLKVQT Sbjct: 61 SEMQNRLLARLGRWAMLPEAELRAELARL--GEAGAPDLPAARRLFARAIETPGGLKVQT 118 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQS----KKLIEEAKK 174 IH+FC ++++FP+EA + F D+ + ++IEE + Sbjct: 119 IHSFCAGVLRRFPIEAGVPHGFTELDDRSAALIRAEIIEEMAR 161 >gi|58039096|ref|YP_191060.1| ATP-dependent nuclease subunit A [Gluconobacter oxydans 621H] gi|58001510|gb|AAW60404.1| ATP-dependent nuclease subunit A [Gluconobacter oxydans 621H] Length = 1191 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 72/179 (40%), Positives = 113/179 (63%), Gaps = 17/179 (9%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--------------NA 60 ++I+ Q ASDP S +VSA+AGSGKT +L+ R+LRL+L A Sbjct: 15 EVIAAADRTQRQASDPRASVFVSASAGSGKTKLLIDRLLRLMLPLYVQTDDGDTILADGA 74 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK-ARH 119 HPS +LCLT+TKAAAAEM++R+ + + +W L D L AE+ + PN + + AR Sbjct: 75 HPSRILCLTYTKAAAAEMANRLQQKLGSWVSLPDAKLGAELESLD--VPNTDETRRRARA 132 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 L + +L+ PGGL+++TIHAFC++++++FPLEA++ HF + ++ + + EA + LA Sbjct: 133 LFLCVLDLPGGLRIETIHAFCQSLLRRFPLEASVDPHFTLMEDTDTTLALREAMEDGLA 191 >gi|254439061|ref|ZP_05052555.1| double-strand break repair helicase AddA [Octadecabacter antarcticus 307] gi|198254507|gb|EDY78821.1| double-strand break repair helicase AddA [Octadecabacter antarcticus 307] Length = 1128 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 66/149 (44%), Positives = 102/149 (68%), Gaps = 2/149 (1%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A+DPT+S W+SANAGSGKT +L +RV RLLLA P +LCLT+TKAAA+EM +R+ Sbjct: 10 QIEAADPTQSTWLSANAGSGKTRVLTERVARLLLAGTRPENVLCLTYTKAAASEMQNRLF 69 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTIHAFCEA 142 + + W+ + L ++ ++ + D +S AR L + +ETPGGLK+QTIH+FC Sbjct: 70 QRLGEWAMMPKPALHKQLVELGTEAAIDDDYLSNARTLFASAIETPGGLKIQTIHSFCAG 129 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEE 171 ++++FPLEA ++ F E+++ +L+ E Sbjct: 130 VLRRFPLEAEVSPQFK-EMEDRAAQLLRE 157 >gi|260575782|ref|ZP_05843778.1| double-strand break repair helicase AddA [Rhodobacter sp. SW2] gi|259021935|gb|EEW25235.1| double-strand break repair helicase AddA [Rhodobacter sp. SW2] Length = 1090 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 65/155 (41%), Positives = 97/155 (62%), Gaps = 1/155 (0%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + + Q+ A+DP RS W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+E Sbjct: 4 NDASARQVQAADPGRSTWLAANAGSGKTRVLTDRVARLLLEGVEPGRILCLTYTKAAASE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGGLKVQTI 136 M +R+ + W+ L D+ L A + + + KAR L +ETPGGL++QTI Sbjct: 64 MQNRLFRRLGGWAMLEDDALRAALADLGVAGAVQPETLGKARQLFARAIETPGGLRIQTI 123 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 H+FC +++++FPLEA ++ F D+ + L +E Sbjct: 124 HSFCASLLRRFPLEAGVSPQFTELDDRAASLLRDE 158 >gi|254476353|ref|ZP_05089739.1| double-strand break repair helicase AddA [Ruegeria sp. R11] gi|214030596|gb|EEB71431.1| double-strand break repair helicase AddA [Ruegeria sp. R11] Length = 1125 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 73/193 (37%), Positives = 115/193 (59%), Gaps = 3/193 (1%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM +R+ Sbjct: 11 QFRAARPDASTWLAANAGSGKTKVLTDRVARLLLRGVQPQHILCLTYTKAAASEMQNRLF 70 Query: 84 EIITAWSHLSDEILSAEITKI-QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + + W+ L D+ L++ +T++ +G + M++AR L +ETPGGLK+QTIH+FC + Sbjct: 71 KRLGEWAMLGDDALTSALTELGEGAIISPEGMAQARTLFARAIETPGGLKIQTIHSFCAS 130 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 ++++FPLEA ++ F+ ++ + L E + D E K ++ + D Sbjct: 131 LLRRFPLEAGVSPQFSEMEDRAAMLLRAEIVEDFAQGD--DRYAEEAKLIAQLARVVTDS 188 Query: 203 DIETLISDIISNR 215 D +TL + I R Sbjct: 189 DFDTLTAAICQRR 201 >gi|255262268|ref|ZP_05341610.1| double-strand break repair helicase AddA [Thalassiobium sp. R2A62] gi|255104603|gb|EET47277.1| double-strand break repair helicase AddA [Thalassiobium sp. R2A62] Length = 1119 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 71/196 (36%), Positives = 123/196 (62%), Gaps = 8/196 (4%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A++P S W++ANAGSGKT +L RV RLLL A P +LCLT+TKAAA+EM +R+ Sbjct: 9 QVRAANPKASTWLAANAGSGKTRVLTDRVARLLLDEAKPEHILCLTYTKAAASEMQNRLF 68 Query: 84 EIITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + + AW+ + D+ L E+ + + + + +++AR L +ETPGGLK+QTIH+FC + Sbjct: 69 KRLGAWTMMDDDKLRGELCDLGIESRIDTNTLARARVLFAQAIETPGGLKIQTIHSFCAS 128 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 ++++FPLEA ++ F + E+++ K++ +A + A Y++ +D Sbjct: 129 LLRRFPLEAGVSPQF-VEMEDRAAKMLRAEVVDDMA------RGDHTAAVYDLASYVSDS 181 Query: 203 DIETLISDIISNRTAL 218 D++ ++ I S++ +L Sbjct: 182 DLDRVLMQITSHKESL 197 >gi|312113012|ref|YP_004010608.1| double-strand break repair helicase AddA [Rhodomicrobium vannielii ATCC 17100] gi|311218141|gb|ADP69509.1| double-strand break repair helicase AddA [Rhodomicrobium vannielii ATCC 17100] Length = 1282 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 66/148 (44%), Positives = 96/148 (64%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 +++ +Q A+DP+ SAWV ANAG+GKTH+LVQR+LRL LA A P ++LCLT TK AAA Sbjct: 10 LAEASRKQRSAADPSVSAWVRANAGTGKTHVLVQRILRLCLAGAAPRSILCLTFTKNAAA 69 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RVL+ + W+ L A + + + +++ AR L T+ + PGGL + TI Sbjct: 70 EMEARVLKTMGEWATADAATLEAALAALLDRPAEAGELAAARTLFATVTDAPGGLPIMTI 129 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQ 164 HAFCE ++++F EAN+ F + EE+ Sbjct: 130 HAFCERLLRRFSFEANVPPGFTVMTEEE 157 >gi|56551994|ref|YP_162833.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis ZM4] gi|56543568|gb|AAV89722.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis ZM4] Length = 1162 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 71/162 (43%), Positives = 108/162 (66%), Gaps = 6/162 (3%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 ++EQL ASDP + W+SA+AG+GKTH+L RVLRLLL A P ++LCLT TKA AAEMS Sbjct: 11 EAEQLQASDPKGNIWLSASAGTGKTHVLTARVLRLLLNRAAPESILCLTFTKAGAAEMSE 70 Query: 81 RVLEIITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + + W L+D+ L E+ + G + ++ ++ AR L +L+ PGGL++QTIH+F Sbjct: 71 RINQRLAKWVIQLNDDELREELQAL-GARYDRDTLALARTLFARVLDAPGGLRIQTIHSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 C++++ FP+EA + F + + ++ EAKK TL I+ Sbjct: 130 CQSLLTAFPVEAGLIPGFQLI---EGREEATEAKK-TLTRIL 167 >gi|260752463|ref|YP_003225356.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551826|gb|ACV74772.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 1162 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 71/162 (43%), Positives = 108/162 (66%), Gaps = 6/162 (3%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 ++EQL ASDP + W+SA+AG+GKTH+L RVLRLLL A P ++LCLT TKA AAEMS Sbjct: 11 EAEQLQASDPKGNIWLSASAGTGKTHVLTARVLRLLLNRAAPESILCLTFTKAGAAEMSE 70 Query: 81 RVLEIITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + + W L+D+ L E+ + G + ++ ++ AR L +L+ PGGL++QTIH+F Sbjct: 71 RINQRLAKWVIQLNDDELREELQAL-GARYDRDTLALARTLFARVLDAPGGLRIQTIHSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 C++++ FP+EA + F + + ++ EAKK TL I+ Sbjct: 130 CQSLLTAFPVEAGLIPGFQLI---EGREEATEAKK-TLTRIL 167 >gi|85705745|ref|ZP_01036842.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp. 217] gi|85669735|gb|EAQ24599.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp. 217] Length = 1123 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 77/197 (39%), Positives = 115/197 (58%), Gaps = 10/197 (5%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A+ P S W+SANAGSGKT +L RV RLLL +P +LCLT+TKAAA+EM +R+ Sbjct: 11 QVEAARPDLSTWLSANAGSGKTRVLTDRVARLLLDGVNPQHILCLTYTKAAASEMQNRLF 70 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCE 141 + AW+ L+D+ L E+ + G + +D + AR L +ETPGGLK+QTIH+FC Sbjct: 71 RRLGAWAMLADDALMQEL-DLLGHEGAITDQTLRDARRLFARAIETPGGLKIQTIHSFCA 129 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 +++++FPLEA +T F ++ + L E + A FY + + Sbjct: 130 SLLRRFPLEAGVTPQFTEMEDRTATLLRAEIVEDLAAG-------PHAATFYALARHYSG 182 Query: 202 EDIETLISDIISNRTAL 218 E +E L +DI+ +RT Sbjct: 183 ETLEKLTADIVRHRTGF 199 >gi|77462066|ref|YP_351570.1| UvrD/Rep family helicase [Rhodobacter sphaeroides 2.4.1] gi|77386484|gb|ABA77669.1| Helicase, UvrD/Rep family [Rhodobacter sphaeroides 2.4.1] Length = 1106 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 73/203 (35%), Positives = 110/203 (54%), Gaps = 7/203 (3%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L + Q+ A+DP S W+SANAGSGKT +L RV RLLL P +LCLT+TKAAA Sbjct: 4 LRDEASERQVQAADPRASTWLSANAGSGKTRVLTDRVARLLLDGVEPQRILCLTYTKAAA 63 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM +R+ + W+ L D L + + +++AR L +ETPGGL++QT Sbjct: 64 SEMQNRLFRRLGEWAMLDDAELRRALDALGVAAVGHEVLAQARRLFARAIETPGGLRIQT 123 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC ++++FPLEA ++ F D+ ++ L EE + I + +L +A+ Sbjct: 124 IHSFCATLLRRFPLEAGVSPQFTELDDRAARLLREEIVEELADRIAPEVVADLARAY--- 180 Query: 196 LEISNDEDIETLISDIISNRTAL 218 ED L ++ N L Sbjct: 181 ----TGEDFGALAEEVARNAAGL 199 >gi|221641019|ref|YP_002527281.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides KD131] gi|221161800|gb|ACM02780.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides KD131] Length = 1106 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 72/200 (36%), Positives = 108/200 (54%), Gaps = 7/200 (3%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 + Q+ A+DP S W+SANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM Sbjct: 7 EASERQVQAADPRASTWLSANAGSGKTRVLTDRVARLLLDGVEPQRILCLTYTKAAASEM 66 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +R+ + W+ L D L + + +++AR L +ETPGGL++QTIH+ Sbjct: 67 QNRLFRRLGGWAMLDDAELRHALDTLGVAAVGHEVLAQARRLFARAIETPGGLRIQTIHS 126 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC ++++FPLEA ++ F D+ ++ L EE + I +L +A+ Sbjct: 127 FCATLLRRFPLEAGVSPQFTELDDRAARLLREEIVEEMADCIAPGVVADLARAY------ 180 Query: 199 SNDEDIETLISDIISNRTAL 218 ED L ++ N L Sbjct: 181 -TGEDFGALAEEVARNAAGL 199 >gi|149201424|ref|ZP_01878399.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp. TM1035] gi|149145757|gb|EDM33783.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp. TM1035] Length = 1123 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 74/196 (37%), Positives = 112/196 (57%), Gaps = 8/196 (4%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A+ P S W+SANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM +R+ Sbjct: 11 QVEAARPDLSTWLSANAGSGKTRVLTDRVARLLLDGVDPQHILCLTYTKAAASEMQNRLF 70 Query: 84 EIITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + AW+ L+D L E+ + + + + AR L +ETPGGLK+QTIH+FC + Sbjct: 71 RRLGAWAMLADAALMQELDLLGHEGAITEQTLRDARRLFARAIETPGGLKIQTIHSFCAS 130 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 ++++FPLEA++T F ++ + L E + A FY + + E Sbjct: 131 LLRRFPLEADVTPQFTEMEDRTATLLRAEIVEDLAAGPQ-------AATFYALARHYSGE 183 Query: 203 DIETLISDIISNRTAL 218 +E L ++I+ NR+ Sbjct: 184 TLEKLTAEIVRNRSGF 199 >gi|254465049|ref|ZP_05078460.1| double-strand break repair helicase AddA [Rhodobacterales bacterium Y4I] gi|206685957|gb|EDZ46439.1| double-strand break repair helicase AddA [Rhodobacterales bacterium Y4I] Length = 1117 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 64/148 (43%), Positives = 96/148 (64%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM +R+ Sbjct: 11 QFRAARPDASTWLAANAGSGKTKVLTDRVARLLLKGVQPQHVLCLTYTKAAASEMQNRLF 70 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + W+ L D L+ +T++ D+++AR L +ETPGGLK+QTIH+FC ++ Sbjct: 71 KRLGEWAMLEDAALTDALTELGEVSTAVEDLAQARTLFARAIETPGGLKIQTIHSFCSSL 130 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEE 171 +++FPLEA ++ F+ D+ + L E Sbjct: 131 LRRFPLEAGVSPQFSEMDDRAGQLLRAE 158 >gi|126460955|ref|YP_001042069.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC 17029] gi|126102619|gb|ABN75297.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC 17029] Length = 1106 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 72/200 (36%), Positives = 108/200 (54%), Gaps = 7/200 (3%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 + Q+ A+DP S W+SANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM Sbjct: 7 EASERQVQAADPRASTWLSANAGSGKTRVLTDRVARLLLDGVEPQRILCLTYTKAAASEM 66 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +R+ + W+ L D L + + +++AR L +ETPGGL++QTIH+ Sbjct: 67 QNRLFRRLGEWAMLDDAELRHALDTLGVAAVGHEVLAQARRLFARAIETPGGLRIQTIHS 126 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC ++++FPLEA ++ F D+ ++ L EE + I +L +A+ Sbjct: 127 FCATLLRRFPLEAGVSPQFTELDDRAARLLREEIVEELADRIAPGVVADLARAY------ 180 Query: 199 SNDEDIETLISDIISNRTAL 218 ED L ++ N L Sbjct: 181 -TGEDFGALAEEVARNAAGL 199 >gi|254463307|ref|ZP_05076723.1| double-strand break repair helicase AddA [Rhodobacterales bacterium HTCC2083] gi|206679896|gb|EDZ44383.1| double-strand break repair helicase AddA [Rhodobacteraceae bacterium HTCC2083] Length = 1122 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 77/196 (39%), Positives = 115/196 (58%), Gaps = 8/196 (4%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A+ P S W+SANAGSGKT +L RV RLLLA P +LCLT+TKAAAAEM +R+ Sbjct: 11 QVDAARPRMSTWLSANAGSGKTRVLTDRVARLLLAQVPPERILCLTYTKAAAAEMQNRLF 70 Query: 84 EIITAWSHLSDEILSAEITKI-QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + + W+ L + L + ++ + +K+ + AR L +E PGGLK+QTIH+FC Sbjct: 71 KRLGEWAMLENSALREALRELGEEGGIDKNALRMARTLFAAAIEAPGGLKIQTIHSFCST 130 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 ++++FPLEAN++ FA EE++ +L+ E +AS E + I+ Sbjct: 131 VLRRFPLEANVSPQFA-EMEERAAELLREELIEDMAS------GEDATLIMNLATITGAY 183 Query: 203 DIETLISDIISNRTAL 218 D+ L +I+ R AL Sbjct: 184 DLTELSGEIVGQRIAL 199 >gi|163738014|ref|ZP_02145430.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107] gi|161388630|gb|EDQ12983.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107] Length = 1122 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 71/198 (35%), Positives = 115/198 (58%), Gaps = 5/198 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM +R+ Sbjct: 11 QFRAARPDASTWLAANAGSGKTKVLTDRVARLLLRGVQPQHILCLTYTKAAASEMQNRLF 70 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTIHAFCEA 142 + + W+ L D+ L++ +T++ ++ M++AR L +ETPGGLK+QTIH+FC + Sbjct: 71 KRLGEWAMLGDDALTSALTELGAHDVISAEGMAQARTLFARAIETPGGLKIQTIHSFCAS 130 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 ++++FPLEA ++ F+ D+ + L + + +I N + D Sbjct: 131 LLRRFPLEAGVSPQFSEMDDRAAVLL----RGEVVEAIANSENPGEAGLIARLARQVTDS 186 Query: 203 DIETLISDIISNRTALKL 220 D +TL + I R+ ++ Sbjct: 187 DFDTLTAAICQRRSDFEV 204 >gi|163742590|ref|ZP_02149976.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Phaeobacter gallaeciensis 2.10] gi|161384175|gb|EDQ08558.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Phaeobacter gallaeciensis 2.10] Length = 1122 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 71/198 (35%), Positives = 115/198 (58%), Gaps = 5/198 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM +R+ Sbjct: 11 QFRAARPDASTWLAANAGSGKTKVLTDRVARLLLRGVQPQHILCLTYTKAAASEMQNRLF 70 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTIHAFCEA 142 + + W+ L D+ L++ +T++ ++ M++AR L +ETPGGLK+QTIH+FC + Sbjct: 71 KRLGEWAMLGDDALTSALTELGAHDVISAEGMAQARTLFARAIETPGGLKIQTIHSFCAS 130 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 ++++FPLEA ++ F+ D+ + L + + +I N + D Sbjct: 131 LLRRFPLEAGVSPQFSEMDDRAAVLL----RGEVVEAIANSENPGEAGLIARLARQVTDS 186 Query: 203 DIETLISDIISNRTALKL 220 D +TL + I R+ ++ Sbjct: 187 DFDTLTAAICQRRSDFEV 204 >gi|329847172|ref|ZP_08262200.1| double-strand break repair helicase AddA [Asticcacaulis biprosthecum C19] gi|328842235|gb|EGF91804.1| double-strand break repair helicase AddA [Asticcacaulis biprosthecum C19] Length = 1174 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 70/152 (46%), Positives = 103/152 (67%), Gaps = 3/152 (1%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 +A+DP S +++ANAGSGKT LV RV RLLL+ A P+ +LC+T+TKAAAAEM R+ + Sbjct: 19 IAADPKASCFLTANAGSGKTSTLVNRVARLLLSRADPAHILCVTYTKAAAAEMQERLFQQ 78 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + W+ DE L ++ +I +P D+ +AR L LETPGGLK+QTIHAFCE +++ Sbjct: 79 LGGWAVADDEQLIGDLERI--GEPTH-DLPRARALFAKALETPGGLKIQTIHAFCEKLLR 135 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 +FPLEA ++ F + D+ + L ++A + L Sbjct: 136 RFPLEAQLSPAFKVLDDLLADDLADKASTAVL 167 >gi|189182928|ref|YP_001936713.1| putative ATP-dependent helicase/nuclease [Orientia tsutsugamushi str. Ikeda] gi|189179699|dbj|BAG39479.1| putative ATP-dependent helicase/nuclease [Orientia tsutsugamushi str. Ikeda] Length = 1155 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 64/146 (43%), Positives = 96/146 (65%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 QL+ASDP S WVSA+AG+GKT +L RVLRLLL+ A +LCLT T AAA EM RV+ Sbjct: 5 QLIASDPYVSCWVSASAGTGKTKVLTDRVLRLLLSGAKLQKILCLTFTNAAANEMLDRVI 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + +W+ + + +L A + + G P S + +AR L L+ + +QTIH+FC+ + Sbjct: 65 AQLKSWACMDNAMLVASMHNMLGINPTDSQVLRARSLCNEYLQAKENIAIQTIHSFCQNL 124 Query: 144 MQQFPLEANITSHFAIADEEQSKKLI 169 +Q+F +EA I ++F I DE ++K++I Sbjct: 125 LQKFSVEAGINANFTILDELKTKEII 150 >gi|149912864|ref|ZP_01901398.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. AzwK-3b] gi|149813270|gb|EDM73096.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. AzwK-3b] Length = 1123 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 101/157 (64%), Gaps = 2/157 (1%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A+ P RS W+SANAGSGKT +L RV RLLL + P +LCLT+TKAAA+EM +R+ Sbjct: 10 QIDAARPDRSTWLSANAGSGKTRVLTDRVARLLLEDVDPRHILCLTYTKAAASEMQNRLF 69 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTIHAFCEA 142 + + W+ L D+ LS E+ + + +D + KAR L +E PGGLK+QTIH+FC Sbjct: 70 KRLGQWAMLPDDRLSRELQDLGHEGLIDADTLRKARRLFARAIEAPGGLKIQTIHSFCAG 129 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 ++++FPLEA ++ F E+++ L+ +AS Sbjct: 130 LLRRFPLEAGVSPQFT-EMEDRTASLLRSEITEAIAS 165 >gi|148284261|ref|YP_001248351.1| ATP-dependent DNA helicase UvrD [Orientia tsutsugamushi str. Boryong] gi|146739700|emb|CAM79510.1| ATP-dependent helicase, UvrD/rep/AddA family [Orientia tsutsugamushi str. Boryong] Length = 1154 Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 64/146 (43%), Positives = 96/146 (65%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 QL+ASDP S WVSA+AG+GKT +L RVLRLLL+ A +LCLT T AAA EM RV+ Sbjct: 5 QLIASDPYVSCWVSASAGTGKTKVLTDRVLRLLLSGAKLQKILCLTFTNAAANEMLDRVI 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + +W+ + + +L A + + G P S + +AR L L+ + +QTIH+FC+ + Sbjct: 65 AQLKSWACMDNAMLVASMHNMLGINPTDSQVLRARSLCNEYLQAKENIAIQTIHSFCQNL 124 Query: 144 MQQFPLEANITSHFAIADEEQSKKLI 169 +Q+F +EA I ++F I DE ++K++I Sbjct: 125 LQKFSVEAGINANFTILDELKTKEII 150 >gi|159045978|ref|YP_001534772.1| double-strand break repair helicase AddA [Dinoroseobacter shibae DFL 12] gi|157913738|gb|ABV95171.1| double-strand break repair helicase AddA [Dinoroseobacter shibae DFL 12] Length = 1125 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 73/198 (36%), Positives = 118/198 (59%), Gaps = 11/198 (5%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A+DPT S W+SANAGSGKT +L RV RLLL + P +LCLT+TKAAA+EM +R+ Sbjct: 13 QIAAADPTSSVWLSANAGSGKTKVLTDRVARLLLEDVPPERILCLTYTKAAASEMQNRLF 72 Query: 84 EIITAWSHLSDEILS---AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 + WS L D L AE+ +Q + + AR L +ETPGGLK+QTIH+FC Sbjct: 73 RTLGGWSMLDDGDLRRRLAELGLLQ-VEITAARCRSARTLFARAIETPGGLKIQTIHSFC 131 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++++FP+EA ++ F D +L +++ L + + + + + + + Sbjct: 132 ASLLRRFPMEAGVSPQFTEMDSRAEAEL----QRAVLRQMAEGPG---RDSLFALAQSVD 184 Query: 201 DEDIETLISDIISNRTAL 218 + ++ L+ +++S+R AL Sbjct: 185 ETNLPELMKELLSHREAL 202 >gi|21328716|gb|AAM48722.1| helicase, UvrD/Rep family [uncultured marine proteobacterium] Length = 1118 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 96/156 (61%), Gaps = 1/156 (0%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 +S Q+ A+ P RS W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+ Sbjct: 3 LSDASLRQIEAAHPGRSTWLAANAGSGKTRVLTDRVARLLLDGVMPQNILCLTYTKAAAS 62 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQT 135 EM +R+ + + W+ L D L E+ + ++ D+ +AR L +E PGGLK+QT Sbjct: 63 EMQNRLFKRLGRWTMLDDVTLLDELAALGVERDLGPDDIDRARTLFARAVEAPGGLKIQT 122 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 IH+FC AI+++F LEA + F DE L++E Sbjct: 123 IHSFCAAILRRFSLEAGVNPQFVEIDERAQNLLLDE 158 >gi|241761923|ref|ZP_04760008.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373603|gb|EER63175.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 1162 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 70/162 (43%), Positives = 107/162 (66%), Gaps = 6/162 (3%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 ++EQL ASDP + W+SA+AG+GKTH+L RVLRLLL A P ++LCLT TKA AAEMS Sbjct: 11 EAEQLQASDPKGNIWLSASAGTGKTHVLTARVLRLLLNRAAPESILCLTFTKAGAAEMSE 70 Query: 81 RVLEIITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + + W L+D+ L E+ + G + ++ ++ AR L +L+ GGL++QTIH+F Sbjct: 71 RINQRLAKWVIQLNDDELREELQAL-GARYDRDTLALARTLFARVLDATGGLRIQTIHSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 C++++ FP+EA + F + + ++ EAKK TL I+ Sbjct: 130 CQSLLTAFPVEAGLIPGFQLI---EGREEATEAKK-TLTRIL 167 >gi|86136735|ref|ZP_01055313.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. MED193] gi|85826059|gb|EAQ46256.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. MED193] Length = 1122 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 63/148 (42%), Positives = 96/148 (64%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM +R+ Sbjct: 16 QFRAARPDASTWLAANAGSGKTKVLTDRVARLLLKGVQPQHILCLTYTKAAASEMQNRLF 75 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + W+ L D L+A + ++ D+++AR L +ETPGGLK+QTIH+FC ++ Sbjct: 76 QRLGEWAMLQDSELTAALGELGEVNTASEDLAQARTLFARAIETPGGLKIQTIHSFCSSL 135 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEE 171 +++FPLEA ++ F+ ++ + L E Sbjct: 136 LRRFPLEAGVSPQFSEMEDRAASLLRAE 163 >gi|294084828|ref|YP_003551588.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664403|gb|ADE39504.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322] Length = 1162 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 66/166 (39%), Positives = 107/166 (64%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 DLI + EQ ASDP S +VSANAG+GKT +L RVLRLLL+ A +LC+T+T+AA Sbjct: 3 DLIQRASIEQARASDPMASVFVSANAGTGKTKLLTDRVLRLLLSGAEADGILCVTYTRAA 62 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM +R+ + W+ +S L+ ++ + P++ ++ AR L IL+ G +V+ Sbjct: 63 AAEMRNRIYARLARWAVISTADLTKDLQAMGIVAPSQGNIRLARMLFAKILDNDNGPRVE 122 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 T+H+FC++I+++FP+EA I + +AD+ + +L AK + + S+ Sbjct: 123 TVHSFCQSILRRFPIEAGIAPNAKLADDAEQDRLKSIAKVAVMNSL 168 >gi|126738527|ref|ZP_01754232.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. SK209-2-6] gi|126720326|gb|EBA17032.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. SK209-2-6] Length = 1126 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 63/148 (42%), Positives = 96/148 (64%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM +R+ Sbjct: 15 QFRAARPDASTWLAANAGSGKTKVLTDRVARLLLKGVQPQHILCLTYTKAAASEMQNRLF 74 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + W+ L D L+A + + + D+++AR L +ETPGGLK+QTIH+FC ++ Sbjct: 75 KRLGEWAMLEDGKLTAALIDLGEVQITGEDLAQARTLFARAIETPGGLKIQTIHSFCSSL 134 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEE 171 +++FPLEA ++ F+ ++ + L E Sbjct: 135 LRRFPLEAGVSPQFSEMEDRAAALLRAE 162 >gi|260429599|ref|ZP_05783576.1| double-strand break repair helicase AddA [Citreicella sp. SE45] gi|260420222|gb|EEX13475.1| double-strand break repair helicase AddA [Citreicella sp. SE45] Length = 1118 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 31/230 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 + Q+ A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA EM Sbjct: 5 EATEAQVRAARPDSSTWLAANAGSGKTRVLTDRVARLLLDGVLPEHILCLTYTKAAATEM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITK--IQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 +R+ + AW+ L DE L AE+ + ++G P + ++ AR L +ETPGGL++QTI Sbjct: 65 QNRLFRRLGAWAMLDDEALRAELRQLGLEGALPPER-LAGARTLFARAIETPGGLRIQTI 123 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK-----------STLASIMLDNN 185 H+FC +++++FPLEA ++ F ++ ++ L E + LA + +N Sbjct: 124 HSFCASLLRRFPLEAGVSPQFHEMEDRAAQLLRTEVLDRLSEGPQAGLVADLAQWLPENY 183 Query: 186 EEL-------KKAFY---------EILEISNDEDIETLISDI-ISNRTAL 218 + L + AF + ++ DED E+L+S + + + TAL Sbjct: 184 DALLAELCGNRAAFIPARSPAEVRALYDLGPDEDAESLLSSVFLGSETAL 233 >gi|114762246|ref|ZP_01441714.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Pelagibaca bermudensis HTCC2601] gi|114545270|gb|EAU48273.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp. HTCC2601] Length = 1125 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 66/154 (42%), Positives = 98/154 (63%), Gaps = 1/154 (0%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 + Q+ A+ P S W+SANAGSGKT +L RV RLLL P +LCLT+TKAAA EM Sbjct: 5 EATEAQVRAARPDLSTWLSANAGSGKTRVLTDRVARLLLDGVLPEHILCLTYTKAAATEM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTIH 137 +R+ + AW+ L DE L AE+ ++ P + ++ AR L +ETPGGL++QTIH Sbjct: 65 QNRLFRRLGAWAMLDDEALGAELRQLGLDGPLPPERLAGARTLFARAIETPGGLRIQTIH 124 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 +FC +++++FPLEA ++ F ++ ++ L E Sbjct: 125 SFCASLLRRFPLEAGVSPQFHEMEDRAAQLLRAE 158 >gi|260431946|ref|ZP_05785917.1| double-strand break repair helicase AddA [Silicibacter lacuscaerulensis ITI-1157] gi|260415774|gb|EEX09033.1| double-strand break repair helicase AddA [Silicibacter lacuscaerulensis ITI-1157] Length = 1119 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 64/154 (41%), Positives = 100/154 (64%), Gaps = 1/154 (0%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 + Q+ A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM Sbjct: 6 EATERQVQAARPDASTWLAANAGSGKTRVLTDRVARLLLDGVQPQHILCLTYTKAAASEM 65 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTIH 137 +R+ + + W+ L D L ++T++ + D +++AR L +ETPGGLK+QTIH Sbjct: 66 QNRLFKRLGEWAMLDDVALLRQLTELGVEGVIDPDRLARARTLFARAIETPGGLKIQTIH 125 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 +FC +++++FPLEA ++ F+ ++ + L EE Sbjct: 126 SFCASLLRRFPLEAGVSPQFSEMEDRAAALLREE 159 >gi|84514936|ref|ZP_01002299.1| ATP-dependent DNA helicase, UvrD/Rep family [Loktanella vestfoldensis SKA53] gi|84511095|gb|EAQ07549.1| ATP-dependent DNA helicase, UvrD/Rep family [Loktanella vestfoldensis SKA53] Length = 1113 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 63/146 (43%), Positives = 98/146 (67%), Gaps = 1/146 (0%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A++P S W++ANAGSGKT +L RV RLLL + P +LCLT+TKAAAAEM +R+ Sbjct: 10 QVDAANPQISTWLAANAGSGKTRVLTDRVARLLLEDVSPQNILCLTYTKAAAAEMQNRLF 69 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTIHAFCEA 142 + + AW+ + D+ L A++ + + +D + AR L +ETPGGLK+QTIH+FC Sbjct: 70 KRLGAWAMMQDDSLRADLRGLGVDRSIDADQLRAARTLFARAIETPGGLKIQTIHSFCAG 129 Query: 143 IMQQFPLEANITSHFAIADEEQSKKL 168 ++++FPLEA ++ F ++ ++ L Sbjct: 130 VLRRFPLEAGVSPQFREMEDRAAQLL 155 >gi|56698684|ref|YP_169061.1| ATP-dependent DNA helicase UvrD [Ruegeria pomeroyi DSS-3] gi|56680421|gb|AAV97087.1| ATP-dependent DNA helicase, UvrD/Rep family [Ruegeria pomeroyi DSS-3] Length = 1118 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 63/149 (42%), Positives = 100/149 (67%), Gaps = 1/149 (0%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A+ P S W++ANAGSGKT +L RV RLLL++ P +LCLT+TKAAA+EM +R+ Sbjct: 11 QVQAARPDTSTWLAANAGSGKTKVLTDRVARLLLSDVQPQHILCLTYTKAAASEMQNRLF 70 Query: 84 EIITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + + W+ L+D L A+++ + + + ++ AR L +ETPGGLK+QTIH+FC Sbjct: 71 KRLGEWAMLADAPLRAQLSDLGVPGAIDDARLAHARTLFARAIETPGGLKIQTIHSFCAT 130 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEE 171 ++++FPLEA ++ F+ ++ + L EE Sbjct: 131 LLRRFPLEAKVSPQFSEMEDRAAALLREE 159 >gi|254509530|ref|ZP_05121597.1| double-strand break repair helicase AddA [Rhodobacteraceae bacterium KLH11] gi|221533241|gb|EEE36229.1| double-strand break repair helicase AddA [Rhodobacteraceae bacterium KLH11] Length = 1119 Score = 132 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 68/160 (42%), Positives = 104/160 (65%), Gaps = 3/160 (1%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + L + Q+ A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKA Sbjct: 1 MTLRNDATERQVQAARPDASTWLAANAGSGKTRVLTDRVARLLLDGVQPQHILCLTYTKA 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITK--IQGKKPNKSDMSKARHLLITILETPGGL 131 AA+EM +R+ + + W+ L+D L +++T I+G N +++AR L +ETPGGL Sbjct: 61 AASEMQNRLFKRLGEWAMLADAPLLSQLTDLGIEGVI-NPDRLAQARTLFARAIETPGGL 119 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 K+QTIH+FC A++++FPLEA ++ FA ++ + L +E Sbjct: 120 KIQTIHSFCAALLRRFPLEAGVSPQFAEMEDRAAALLRDE 159 >gi|146278983|ref|YP_001169142.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC 17025] gi|145557224|gb|ABP71837.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC 17025] Length = 1119 Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 73/204 (35%), Positives = 115/204 (56%), Gaps = 15/204 (7%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 + Q+ A+DP S W+SANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM Sbjct: 21 EASERQVQAADPRASTWLSANAGSGKTRVLTDRVARLLLDGVEPQRILCLTYTKAAASEM 80 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +R+ + W+ L D L A + + + +++AR L +ETPGGL++QTIH+ Sbjct: 81 QNRLFRRLGEWAMLEDAALRAALDALGVEAVGHEVLAQARRLFARAIETPGGLRIQTIHS 140 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSK----KLIEEAKKSTLASIMLDNNEELKKAFYE 194 FC ++++FPLEA ++ F D+ ++ +++EE T +++ EL +A+ Sbjct: 141 FCATLLRRFPLEAGVSPQFTELDDRAARLLRDEILEEMADRTAPALV----AELARAY-- 194 Query: 195 ILEISNDEDIETLISDIISNRTAL 218 E+ L ++ NR L Sbjct: 195 -----TGEEFGALAEEVARNRAGL 213 >gi|114799862|ref|YP_760584.1| double-strand break repair helicase AddA [Hyphomonas neptunium ATCC 15444] gi|114740036|gb|ABI78161.1| double-strand break repair helicase AddA [Hyphomonas neptunium ATCC 15444] Length = 1168 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 68/169 (40%), Positives = 101/169 (59%), Gaps = 9/169 (5%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLL------ANAHPSTLLCLTHTKAAAAEMSHRV 82 +P SA+ +ANAGSGKT +L+ RV RLLL A P ++LC+T+T+AAA EM R+ Sbjct: 23 NPDVSAYATANAGSGKTKVLIDRVARLLLRREDGRPGADPDSILCITYTRAAANEMLTRL 82 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNK---SDMSKARHLLITILETPGGLKVQTIHAF 139 + W+ D+ L ++K++G+ P K D+ AR L LETPGGL+++TIHAF Sbjct: 83 FRTLGDWAVKEDDKLREALSKLEGRAPEKYSREDLRDARRLFARALETPGGLRIETIHAF 142 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 C I+++FPLEA + FA ++ +K L + AK + +EL Sbjct: 143 CARILRRFPLEAGVVPGFAEMEDRDAKALWQAAKDRAILEAAQSAPDEL 191 >gi|259418122|ref|ZP_05742041.1| double-strand break repair helicase AddA [Silicibacter sp. TrichCH4B] gi|259347028|gb|EEW58842.1| double-strand break repair helicase AddA [Silicibacter sp. TrichCH4B] Length = 1121 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 63/149 (42%), Positives = 96/149 (64%), Gaps = 1/149 (0%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM +R+ Sbjct: 10 QFRAARPDASTWLAANAGSGKTKVLTDRVARLLLRGVEPQHILCLTYTKAAASEMQNRLF 69 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTIHAFCEA 142 + + W+ L D L A + + + + D +++AR L +ETPGGLK+QTIH+FC + Sbjct: 70 QRLGEWAMLPDAKLRAALVDLGAEDASVGDGLAQARTLFARAIETPGGLKIQTIHSFCSS 129 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEE 171 ++++FPLEA ++ F+ ++ + L E Sbjct: 130 LLRRFPLEAGVSPQFSEMEDRAAAMLRAE 158 >gi|148555593|ref|YP_001263175.1| double-strand break repair helicase AddA [Sphingomonas wittichii RW1] gi|148500783|gb|ABQ69037.1| Double-strand break repair helicase AddA [Sphingomonas wittichii RW1] Length = 1142 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 67/163 (41%), Positives = 100/163 (61%), Gaps = 7/163 (4%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 + +Q ASDP W+SA+AG+GKTH+L RVLRLLL A P +LCLT TKA AAEM+ Sbjct: 12 QPQQRAASDPRELVWLSASAGTGKTHVLTARVLRLLLGGAAPEAILCLTFTKAGAAEMAE 71 Query: 81 RVLEIITAWSHLSDEI-LSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIHA 138 R+ + W+ D++ L+ ++T++ G+ + +AR L +LE P GGL++QTIHA Sbjct: 72 RIHRRLAHWAGQKDDLKLTQDLTRL-GEDAGPEALKRARQLFARVLEAPGGGLRIQTIHA 130 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 FC+ ++ FP EA +T F + + L + TLA ++ Sbjct: 131 FCQTLLAGFPAEAGLTPGFRPIEGREEAAL----ARRTLADLL 169 >gi|84501212|ref|ZP_00999417.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola batsensis HTCC2597] gi|84390503|gb|EAQ02991.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola batsensis HTCC2597] Length = 1117 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 65/149 (43%), Positives = 94/149 (63%), Gaps = 1/149 (0%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A+ P RS W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA EM +R+ Sbjct: 10 QVDAARPDRSTWLAANAGSGKTRVLTDRVARLLLDGVLPQHILCLTYTKAAATEMQNRLF 69 Query: 84 EIITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + + W+ L D+ L E+ + + ++ AR L +ETPGGLK+QTIH+FC A Sbjct: 70 KRLGHWAMLPDDQLRTELETLGIEDRVTAGRLNLARTLFARAIETPGGLKIQTIHSFCAA 129 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEE 171 ++++FPLEA ++ F +E + L E Sbjct: 130 LLRRFPLEAGVSPQFTEMEERDATLLRAE 158 >gi|163732946|ref|ZP_02140390.1| ATP-dependent DNA nuclease, putative [Roseobacter litoralis Och 149] gi|161393481|gb|EDQ17806.1| ATP-dependent DNA nuclease, putative [Roseobacter litoralis Och 149] Length = 1125 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 74/200 (37%), Positives = 113/200 (56%), Gaps = 14/200 (7%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM +R+ Sbjct: 11 QVDAARPDASTWLAANAGSGKTRVLTDRVARLLLDKVEPEHILCLTYTKAAASEMQNRLF 70 Query: 84 EIITAWSHLSDEILSAEITKIQGKKP--NKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + + W+ L D L AE + G + + + KAR L +ETPGGLK+QTIH+FC Sbjct: 71 KRLGEWAMLEDAAL-AEALRDLGVETTVDAEKLRKARTLFARAIETPGGLKIQTIHSFCA 129 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA--FYEILEIS 199 +++++FPLEA ++ F+ IEE L + ++D + A ++ Sbjct: 130 SLLRRFPLEAGVSPQFS---------EIEERAADLLRAEIIDTMAQGPDAGLIADLARHY 180 Query: 200 NDEDIETLISDIISNRTALK 219 ED E L ++ N+ + + Sbjct: 181 TGEDFEKLAKAVVQNKDSFR 200 >gi|99082686|ref|YP_614840.1| UvrD/REP helicase [Ruegeria sp. TM1040] gi|99038966|gb|ABF65578.1| ATP-dependent nuclease subunit A [Ruegeria sp. TM1040] Length = 1121 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 63/149 (42%), Positives = 94/149 (63%), Gaps = 1/149 (0%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM +R+ Sbjct: 10 QFRAARPDASTWLAANAGSGKTKVLTDRVARLLLRGVEPQHILCLTYTKAAASEMQNRLF 69 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTIHAFCEA 142 + + W+ L D L A + + + D +++AR L +ETPGGLK+QTIH+FC + Sbjct: 70 QRLGEWAMLPDAKLRAALVDLGAEDAAIGDGLAQARTLFARAIETPGGLKIQTIHSFCSS 129 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEE 171 ++++FPLEA ++ F ++ + L E Sbjct: 130 LLRRFPLEAGVSPQFTEMEDRAAAMLRAE 158 >gi|163745129|ref|ZP_02152489.1| ATP-dependent DNA nuclease, putative [Oceanibulbus indolifex HEL-45] gi|161381947|gb|EDQ06356.1| ATP-dependent DNA nuclease, putative [Oceanibulbus indolifex HEL-45] Length = 1123 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 75/199 (37%), Positives = 112/199 (56%), Gaps = 14/199 (7%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A+ P S W++ANAGSGKT +L RV RLLL + P +LCLT+TKAAA+EM +R+ Sbjct: 12 QIEAARPDASTWLTANAGSGKTRVLTDRVARLLLDDVEPQHILCLTYTKAAASEMQNRLF 71 Query: 84 EIITAWSHLSDEILSAEITK--IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + + W+ L D+ L + + +QG+ + AR L +ETPGGLK+QTIH+FC Sbjct: 72 KRLGEWAMLKDDALRSALADLGVQGEL-TPEQLRNARTLFARAIETPGGLKIQTIHSFCA 130 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA--FYEILEIS 199 A++++FPLEA ++ F IE+ L + ++D E + A +I Sbjct: 131 ALLRRFPLEAQVSPQFT---------EIEDRAADLLRAEIVDEMAEGEDAPLVADIARHY 181 Query: 200 NDEDIETLISDIISNRTAL 218 ED +L I+ R A Sbjct: 182 TGEDFASLTRSIVGQRDAF 200 >gi|94496379|ref|ZP_01302956.1| UvrD/REP helicase [Sphingomonas sp. SKA58] gi|94424125|gb|EAT09149.1| UvrD/REP helicase [Sphingomonas sp. SKA58] Length = 1144 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 64/165 (38%), Positives = 95/165 (57%), Gaps = 5/165 (3%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 +Q A+ P W+SA+AG+GKTH+L RV RLLL P +LCLT TKA AAEM+ R+ Sbjct: 17 DQARAAGPDAHVWLSASAGTGKTHVLTARVFRLLLQGVRPENILCLTFTKAGAAEMADRI 76 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + + AW + L+A++ + G+ AR L +LE+ GGL++QTIH FC+ Sbjct: 77 HDRLAAWVQMDGPALAADLMAL-GEDHGPQMQDHARRLFAEVLESTGGLRIQTIHGFCQQ 135 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 ++ FPLEA + F D+ + L + TLA +++ EE Sbjct: 136 LLTAFPLEAELAPGFRPLDQREQSAL----ARQTLADVVVRAQEE 176 >gi|126732963|ref|ZP_01748724.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sagittula stellata E-37] gi|126706580|gb|EBA05656.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sagittula stellata E-37] Length = 1123 Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 63/154 (40%), Positives = 99/154 (64%), Gaps = 1/154 (0%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 + Q+ A+ P S W++ANAGSGKT +L RV RLLL PS +LCLT+TKAAA EM Sbjct: 4 EATQRQVDAAAPDASTWLAANAGSGKTRVLTDRVARLLLEGVDPSHILCLTYTKAAATEM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKK-PNKSDMSKARHLLITILETPGGLKVQTIH 137 +R+ + + AW+ L + L E+ + + P+ + + +AR L +ETPGGL++QTIH Sbjct: 64 QNRLFKRLGAWAMLPEPDLRDELAALGVETAPSHAFLQEARTLFARAIETPGGLRIQTIH 123 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 +FC +++++FPLEA ++ F ++ ++ L E Sbjct: 124 SFCASLLRRFPLEARVSPQFQEMEDRAAELLRAE 157 >gi|83942010|ref|ZP_00954472.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter sp. EE-36] gi|83847830|gb|EAP85705.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter sp. EE-36] Length = 1125 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 75/204 (36%), Positives = 111/204 (54%), Gaps = 16/204 (7%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A+ P S W+ ANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM +R+ Sbjct: 12 QIDAARPDASTWLGANAGSGKTRVLTDRVARLLLNGVEPQHILCLTYTKAAASEMQNRLF 71 Query: 84 EIITAWSHLSDEILSAEITKI---QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 + + AW+ L+D L ++++ G P K M AR L +ETPGGLK+QTIH+FC Sbjct: 72 KRLGAWAMLTDADLRHSLSELGVKDGFTPEKLRM--ARTLFARAIETPGGLKIQTIHSFC 129 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA--FYEILEI 198 +++++FPLEA ++ F IE+ L + ++D E + A + + Sbjct: 130 ASLLRRFPLEAGVSPQFT---------EIEDRAADLLRAEIVDTMAEGQDAALITTLARM 180 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 ED L I+ R + Sbjct: 181 YTGEDFSKLTRSIVGQREGFATVL 204 >gi|83953059|ref|ZP_00961781.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter sp. NAS-14.1] gi|83842027|gb|EAP81195.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter sp. NAS-14.1] Length = 1125 Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 75/204 (36%), Positives = 111/204 (54%), Gaps = 16/204 (7%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A+ P S W+ ANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM +R+ Sbjct: 12 QIDAARPDASTWLGANAGSGKTRVLTDRVARLLLNGVEPQHILCLTYTKAAASEMQNRLF 71 Query: 84 EIITAWSHLSDEILSAEITKI---QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 + + AW+ L+D L ++++ G P K M AR L +ETPGGLK+QTIH+FC Sbjct: 72 KRLGAWAMLTDADLRHSLSELGVEDGFTPEKLRM--ARTLFARAIETPGGLKIQTIHSFC 129 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA--FYEILEI 198 +++++FPLEA ++ F IE+ L + ++D E + A + + Sbjct: 130 ASLLRRFPLEAGVSPQFT---------EIEDRAADLLRAEIVDTMAEGQDAALITTLARM 180 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 ED L I+ R + Sbjct: 181 YTGEDFSKLTRSIVGQREGFATVL 204 >gi|114328674|ref|YP_745831.1| ATP-dependent nuclease subunit A [Granulibacter bethesdensis CGDNIH1] gi|114316848|gb|ABI62908.1| ATP-dependent nuclease subunit A [Granulibacter bethesdensis CGDNIH1] Length = 1159 Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 66/161 (40%), Positives = 107/161 (66%), Gaps = 1/161 (0%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 + + Q ASDP SA+VSA+AGSGKT +L R+LRL+L+ AHP + CLT TKA AAEM Sbjct: 10 EAERNQRDASDPIVSAFVSASAGSGKTKLLTDRLLRLMLSGAHPGRIQCLTFTKAGAAEM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + R+ + AW +SD L + + P+ + +AR L +L+ PGG++++TIHA Sbjct: 70 AIRLRSRLGAWVTMSDAALDQALAALA-FTPDDAARLRARALFAQVLDLPGGMRIETIHA 128 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 FC++++++FPLEA ++ HF + + + + +EA+++ LA+ Sbjct: 129 FCQSLLRRFPLEAALSPHFKMIEPAEQEVTRQEAQETMLAA 169 >gi|254488041|ref|ZP_05101246.1| double-strand break repair helicase AddA [Roseobacter sp. GAI101] gi|214044910|gb|EEB85548.1| double-strand break repair helicase AddA [Roseobacter sp. GAI101] Length = 1125 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 76/197 (38%), Positives = 109/197 (55%), Gaps = 16/197 (8%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A+ P S W+ ANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM +R+ Sbjct: 12 QIDAARPDASTWLGANAGSGKTRVLTDRVARLLLNEVEPQHILCLTYTKAAASEMQNRLF 71 Query: 84 EIITAWSHLSDEILSAEITKI---QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 + + AW+ L D L A + ++ P K M AR L +ETPGGLK+QTIH+FC Sbjct: 72 KRLGAWAMLKDADLRASLAELGVTDAFTPEKLRM--ARTLFARAIETPGGLKIQTIHSFC 129 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA--FYEILEI 198 +++++FPLEA ++ F IE+ L + ++DN E + A + Sbjct: 130 ASLLRRFPLEAGVSPQFT---------EIEDRAADLLRAEIVDNMAEGRDAPLVTALARH 180 Query: 199 SNDEDIETLISDIISNR 215 ED L + I+ R Sbjct: 181 YTGEDFSKLTNSIVGQR 197 >gi|326403648|ref|YP_004283730.1| double-strand break repair helicase AddA [Acidiphilium multivorum AIU301] gi|325050510|dbj|BAJ80848.1| double-strand break repair helicase AddA [Acidiphilium multivorum AIU301] Length = 1157 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 59/130 (45%), Positives = 90/130 (69%), Gaps = 1/130 (0%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 SDP+ SA+V A+AGSGKT +L R+LRL+L+ A P +LCLT T+AAAAEM+ R+ + Sbjct: 16 SDPSISAFVGASAGSGKTKLLTDRLLRLMLSGATPGRILCLTFTRAAAAEMAIRLRRRLG 75 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 W+ +DE L A++ + + +AR L +L+ PGGL++ T+HAFC++++++F Sbjct: 76 DWAIATDETLDADLAALD-MPADTGTRHRARMLFGQVLDLPGGLRIDTVHAFCQSLLRRF 134 Query: 148 PLEANITSHF 157 PLEA I+ HF Sbjct: 135 PLEAQISPHF 144 >gi|148260455|ref|YP_001234582.1| UvrD-like DNA helicase, C terminal [Acidiphilium cryptum JF-5] gi|146402136|gb|ABQ30663.1| UvrD-like DNA helicase, C terminal [Acidiphilium cryptum JF-5] Length = 1157 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 59/130 (45%), Positives = 90/130 (69%), Gaps = 1/130 (0%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 SDP+ SA+V A+AGSGKT +L R+LRL+L+ A P +LCLT T+AAAAEM+ R+ + Sbjct: 16 SDPSISAFVGASAGSGKTKLLTDRLLRLMLSGATPGRILCLTFTRAAAAEMAIRLRRRLG 75 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 W+ +DE L A++ + + +AR L +L+ PGGL++ T+HAFC++++++F Sbjct: 76 DWAIATDETLDADLAALD-MPADTGTRHRARMLFGQVLDLPGGLRIDTVHAFCQSLLRRF 134 Query: 148 PLEANITSHF 157 PLEA I+ HF Sbjct: 135 PLEAQISPHF 144 >gi|110677844|ref|YP_680851.1| ATP-dependent DNA nuclease, putative [Roseobacter denitrificans OCh 114] gi|109453960|gb|ABG30165.1| ATP-dependent DNA nuclease, putative [Roseobacter denitrificans OCh 114] Length = 1125 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 63/149 (42%), Positives = 95/149 (63%), Gaps = 1/149 (0%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q+ A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM +R+ Sbjct: 11 QVDAARPDASTWLAANAGSGKTRVLTDRVARLLLDKVAPEHILCLTYTKAAASEMQNRLF 70 Query: 84 EIITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + + W+ L D+ L+ + + + + + KAR L +ETPGGLK+QTIH+FC + Sbjct: 71 KRLGEWAMLQDDALAEALRDLGVETAVDAEKLRKARTLFARAIETPGGLKIQTIHSFCAS 130 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEE 171 ++++FPLEA ++ F +E + L E Sbjct: 131 LLRRFPLEARVSPQFTEIEERAADLLRAE 159 >gi|296117285|ref|ZP_06835876.1| double-strand break repair helicase AddA [Gluconacetobacter hansenii ATCC 23769] gi|295976178|gb|EFG82965.1| double-strand break repair helicase AddA [Gluconacetobacter hansenii ATCC 23769] Length = 1208 Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats. Identities = 67/166 (40%), Positives = 98/166 (59%), Gaps = 15/166 (9%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA----NAH--------- 61 D I+ Q ASDP S +VSA+AGSGKT +L+ R+LRL+L +AH Sbjct: 32 DAIALANESQAQASDPQASVFVSASAGSGKTKLLIDRLLRLMLPRPTHDAHGQAVLVPGS 91 Query: 62 -PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 PS +LCLT TKAAAAEM+ R+ + W L D L E+ + P AR L Sbjct: 92 DPSRILCLTFTKAAAAEMAIRLQNRLGRWVTLPDAALDTELRDL-FVPPEPRTRQVAREL 150 Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSK 166 +L+ PGG+++ TIHAFC++++++FP+EA I+ HF + +E ++ Sbjct: 151 FARVLDLPGGMRIGTIHAFCQSLLRRFPVEAAISPHFTLVEETDAR 196 >gi|89056557|ref|YP_512008.1| UvrD/REP helicase [Jannaschia sp. CCS1] gi|88866106|gb|ABD56983.1| UvrD/REP helicase [Jannaschia sp. CCS1] Length = 1120 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 62/148 (41%), Positives = 86/148 (58%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+DP S W+ ANAGSGKT +L RV RLLL P +LCLT+TKAAA EM +R+ Sbjct: 8 QTRAADPATSTWLGANAGSGKTRVLTDRVARLLLDGVPPERILCLTYTKAAAMEMQNRLF 67 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + W+ D L + I + AR L +E PGGLK+QTIH+FC ++ Sbjct: 68 SRLGTWAMKDDAALRDTLGAIGVGGLTPELLDTARTLFARAIEAPGGLKIQTIHSFCASV 127 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEE 171 +++FPLEA ++ F DE +L+ + Sbjct: 128 LRRFPLEARVSPAFTEIDERVQARLLAD 155 >gi|332185666|ref|ZP_08387413.1| double-strand break repair helicase AddA [Sphingomonas sp. S17] gi|332014024|gb|EGI56082.1| double-strand break repair helicase AddA [Sphingomonas sp. S17] Length = 1148 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 63/153 (41%), Positives = 90/153 (58%), Gaps = 2/153 (1%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 K +Q ASDPT W+SA+AG+GKT +L RV RLLL P ++LCLT TKA AAEM+ Sbjct: 8 KGDQAAASDPTAHVWLSASAGTGKTQVLAARVFRLLLRGVAPESILCLTFTKAGAAEMAQ 67 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIHAF 139 R+ + AW + + L A++ K G+ +AR L +L+ P GGL++QTIH F Sbjct: 68 RINGRLAAWVRMPETELFADL-KALGETAGPELRERARTLFARVLDAPGGGLRIQTIHGF 126 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 C+ ++ FP+EA + F + + L EA Sbjct: 127 CQGLLAAFPVEAGLAPGFRPLEAREEAVLAREA 159 >gi|209543463|ref|YP_002275692.1| double-strand break repair helicase AddA [Gluconacetobacter diazotrophicus PAl 5] gi|209531140|gb|ACI51077.1| double-strand break repair helicase AddA [Gluconacetobacter diazotrophicus PAl 5] Length = 1185 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 66/181 (36%), Positives = 107/181 (59%), Gaps = 17/181 (9%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL----------------LL 57 +D I + Q ASDP S +VSA+AGSGKT +L+ R+LRL LL Sbjct: 4 LDAIGLANARQGEASDPGASVFVSASAGSGKTKLLIDRLLRLMLPRPAPDARGDGAGDLL 63 Query: 58 ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA 117 A A P+ + CLT TKAAAAEM+ R+ + + +W L D L E+ + P ++ A Sbjct: 64 AGADPARIQCLTFTKAAAAEMAIRLQKRLGSWVTLPDASLDRELAFLS-VPPCEATRRAA 122 Query: 118 RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 R L +L+ PGG+++ TIHAFC++++++FP+EA I+ HF + ++ ++ + E+ ++ + Sbjct: 123 RELFARVLDLPGGMRIGTIHAFCQSLLRRFPVEAAISPHFTLVEDTDARIAMGESVEAVV 182 Query: 178 A 178 Sbjct: 183 G 183 >gi|239947179|ref|ZP_04698932.1| ATP-dependent helicase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921455|gb|EER21479.1| ATP-dependent helicase [Rickettsia endosymbiont of Ixodes scapularis] Length = 847 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 63/139 (45%), Positives = 83/139 (59%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q ASDP S WVSA+AG+GKT IL R LRLL+ PS +LCLT T AAA EM R+ Sbjct: 5 QQQASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQARIN 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + S + E L E+ + G KP+ + A+ L IL + L + TIHAFC+ I Sbjct: 65 SRLKYLSLCNAEKLEEELFLMSGNKPSPQETENAKTLYDKILNSNEPLNIYTIHAFCQKI 124 Query: 144 MQQFPLEANITSHFAIADE 162 ++ FP+EA+IT F I +E Sbjct: 125 LKTFPVEADITPEFKILEE 143 >gi|330991806|ref|ZP_08315755.1| ATP-dependent helicase/nuclease subunit A [Gluconacetobacter sp. SXCC-1] gi|329760827|gb|EGG77322.1| ATP-dependent helicase/nuclease subunit A [Gluconacetobacter sp. SXCC-1] Length = 1194 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 98/167 (58%), Gaps = 17/167 (10%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--------------A 60 D I Q ASDP S +VSA+AGSGKT +LV R+LRL+L + Sbjct: 13 DAIGLANRSQAQASDPQASVFVSASAGSGKTKLLVDRLLRLMLPRDVPDRDGVMTRVPGS 72 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK-ARH 119 P+ +LCLT TKAAAAEMS R+ + W L D L E+ ++ P + + AR Sbjct: 73 DPARILCLTFTKAAAAEMSIRLQNRLGQWVMLPDADLDRELARLS--VPTGVETRRVARE 130 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSK 166 L +L+ PGG+++ TIHAFC++++++FP+EA I+ HF + +E ++ Sbjct: 131 LFARVLDLPGGMRIGTIHAFCQSLLRRFPIEAAISPHFTLIEETDAR 177 >gi|238650390|ref|YP_002916242.1| ATP-dependent helicase [Rickettsia peacockii str. Rustic] gi|238624488|gb|ACR47194.1| ATP-dependent helicase [Rickettsia peacockii str. Rustic] Length = 822 Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 63/136 (46%), Positives = 79/136 (58%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 ASDP S WVSA+AG+GKT IL R LRLL+ PS +LCLT T AAA EM R+ + Sbjct: 8 ASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRINSRL 67 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 S + E L + + G KP+ D A+ L IL + L + TIHAFC+ I+ Sbjct: 68 KYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKILNT 127 Query: 147 FPLEANITSHFAIADE 162 FPLEA IT F I +E Sbjct: 128 FPLEAGITPEFTILEE 143 >gi|15893037|ref|NP_360751.1| ATP-dependent helicase [Rickettsia conorii str. Malish 7] gi|15620238|gb|AAL03652.1| ATP-dependent helicase [Rickettsia conorii str. Malish 7] Length = 822 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 63/136 (46%), Positives = 79/136 (58%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 ASDP S WVSA+AG+GKT IL R LRLL+ PS +LCLT T AAA EM R+ + Sbjct: 8 ASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRINSRL 67 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 S + E L + + G KP+ D A+ L IL + L + TIHAFC+ I+ Sbjct: 68 KYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKILNT 127 Query: 147 FPLEANITSHFAIADE 162 FPLEA IT F I +E Sbjct: 128 FPLEAGITPEFKILEE 143 >gi|34581275|ref|ZP_00142755.1| ATP-dependent helicase [Rickettsia sibirica 246] gi|28262660|gb|EAA26164.1| ATP-dependent helicase [Rickettsia sibirica 246] Length = 822 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 63/136 (46%), Positives = 79/136 (58%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 ASDP S WVSA+AG+GKT IL R LRLL+ PS +LCLT T AAA EM R+ + Sbjct: 8 ASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRINSRL 67 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 S + E L + + G KP+ D A+ L IL + L + TIHAFC+ I+ Sbjct: 68 KYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKILNT 127 Query: 147 FPLEANITSHFAIADE 162 FPLEA IT F I +E Sbjct: 128 FPLEAGITPEFKILEE 143 >gi|229587088|ref|YP_002845589.1| ATP-dependent helicase [Rickettsia africae ESF-5] gi|228022138|gb|ACP53846.1| ATP-dependent helicase [Rickettsia africae ESF-5] Length = 822 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 63/136 (46%), Positives = 79/136 (58%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 ASDP S WVSA+AG+GKT IL R LRLL+ PS +LCLT T AAA EM R+ + Sbjct: 8 ASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRINSRL 67 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 S + E L + + G KP+ D A+ L IL + L + TIHAFC+ I+ Sbjct: 68 KYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKILNT 127 Query: 147 FPLEANITSHFAIADE 162 FPLEA IT F I +E Sbjct: 128 FPLEAGITPEFKILEE 143 >gi|258543653|ref|YP_003189086.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01] gi|256634731|dbj|BAI00707.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01] gi|256637787|dbj|BAI03756.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-03] gi|256640841|dbj|BAI06803.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-07] gi|256643896|dbj|BAI09851.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-22] gi|256646951|dbj|BAI12899.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-26] gi|256650004|dbj|BAI15945.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-32] gi|256652994|dbj|BAI18928.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656048|dbj|BAI21975.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-12] Length = 1190 Score = 121 bits (303), Expect = 9e-26, Method: Composition-based stats. Identities = 69/172 (40%), Positives = 109/172 (63%), Gaps = 11/172 (6%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL----------LLANAHPSTLL 66 ISQ ++Q LASDP+ S +VSA+AGSGKT +L+ R+LRL +L + P+ +L Sbjct: 13 ISQANAQQALASDPSASVFVSASAGSGKTKLLIDRLLRLMLPRLAEDGSILPGSSPARIL 72 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 CLT TKAAAAEMS R+ + + W LSDE L E+ + ++ +AR L +L+ Sbjct: 73 CLTFTKAAAAEMSIRLQKRLGRWVTLSDEELDKELAGLYVPCTEET-RRRARALFAEVLD 131 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 PGG+++ TIHAFC++++++FPLEA++ HF + +E + ++ ++ L Sbjct: 132 LPGGMRIGTIHAFCQSLLRRFPLEASMNPHFTVMEETDASLALQACVEAILG 183 >gi|103485653|ref|YP_615214.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256] gi|98975730|gb|ABF51881.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256] Length = 1166 Score = 121 bits (303), Expect = 9e-26, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 94/153 (61%), Gaps = 8/153 (5%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+DP R W+ A+AG+GKT +L RVLRLLL P +LC+T TKA AAEM+HR+ Sbjct: 14 QRAAADPARHVWLGASAGTGKTQVLSARVLRLLLDGVSPEAILCITFTKAGAAEMAHRIH 73 Query: 84 EIITAWSHLSDEILSAEIT------KIQGKKPN-KSDMSKARHLLITILETPGG-LKVQT 135 + + W + D L ++ ++ G + +++AR L T++++PGG ++VQT Sbjct: 74 QRLAKWVRMEDGELRLDLQALGIDLELHGHDDGVPALIARARALFATVIDSPGGAIRVQT 133 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 IH+FC+ ++ FPLEA + F +E+++ L Sbjct: 134 IHSFCQTLLASFPLEAKLLPGFRAIEEDEAGAL 166 >gi|307292809|ref|ZP_07572655.1| double-strand break repair helicase AddA [Sphingobium chlorophenolicum L-1] gi|306880875|gb|EFN12091.1| double-strand break repair helicase AddA [Sphingobium chlorophenolicum L-1] Length = 1147 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 65/164 (39%), Positives = 97/164 (59%), Gaps = 6/164 (3%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 W+SA+AG+GKTH+L RV RLLL P +LCLT TKA AAEM+ RV + + AW +S Sbjct: 30 WLSASAGTGKTHVLTARVFRLLLQGVRPENILCLTFTKAGAAEMADRVHDRLAAWVQMSG 89 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILE-TPGGLKVQTIHAFCEAIMQQFPLEANI 153 L+A++ + G+ + AR L +LE T GGL++QTIH FC+ ++ FPLEA++ Sbjct: 90 PALAADLMAL-GEDHGQEMQDVARRLFAEVLESTGGGLRIQTIHGFCQQLLTAFPLEADL 148 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 F D+ + L + TLA + + ++ +A E L+ Sbjct: 149 PPGFRPLDQREQAGL----ARQTLADMAVVAQQQGDEALIEALQ 188 >gi|157828959|ref|YP_001495201.1| ATP-dependent helicase [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801440|gb|ABV76693.1| ATP-dependent helicase [Rickettsia rickettsii str. 'Sheila Smith'] Length = 822 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 62/136 (45%), Positives = 78/136 (57%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 ASDP S WVSA+AG+GKT IL R LRLL+ PS +LCLT T AAA EM R+ + Sbjct: 8 ASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRINSRL 67 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 S + E L + + G KP+ D A+ L IL + L + TIHAFC+ I+ Sbjct: 68 KYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKILNT 127 Query: 147 FPLEANITSHFAIADE 162 FP EA IT F I +E Sbjct: 128 FPSEAGITPEFTILEE 143 >gi|165933684|ref|YP_001650473.1| ATP-dependent nuclease subunit A [Rickettsia rickettsii str. Iowa] gi|165908771|gb|ABY73067.1| ATP-dependent nuclease subunit A [Rickettsia rickettsii str. Iowa] Length = 822 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 62/136 (45%), Positives = 78/136 (57%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 ASDP S WVSA+AG+GKT IL R LRLL+ PS +LCLT T AAA EM R+ + Sbjct: 8 ASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRINSRL 67 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 S + E L + + G KP+ D A+ L IL + L + TIHAFC+ I+ Sbjct: 68 KYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKILNT 127 Query: 147 FPLEANITSHFAIADE 162 FP EA IT F I +E Sbjct: 128 FPSEAGITPEFTILEE 143 >gi|157826193|ref|YP_001493913.1| ATP-dependent helicase [Rickettsia akari str. Hartford] gi|157800151|gb|ABV75405.1| ATP-dependent helicase [Rickettsia akari str. Hartford] Length = 818 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 62/139 (44%), Positives = 81/139 (58%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q ASDP S WVSA+AG+GKT IL R LRLL+ P+ +LCLT T +AA EM R+ Sbjct: 5 QQQASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPTNILCLTFTNSAAIEMKARIN 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + S E L E+ + G KP ++ A+ L IL++ L + TIHAFC+ I Sbjct: 65 SKLKHLSLCDAENLENELFLMSGNKPLPQEIENAKTLYDKILKSNEPLNIYTIHAFCQKI 124 Query: 144 MQQFPLEANITSHFAIADE 162 + FPLEA IT F I +E Sbjct: 125 LNTFPLEAGITPEFKILEE 143 >gi|87200013|ref|YP_497270.1| UvrD/REP helicase [Novosphingobium aromaticivorans DSM 12444] gi|87135694|gb|ABD26436.1| UvrD/REP helicase [Novosphingobium aromaticivorans DSM 12444] Length = 1161 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 68/197 (34%), Positives = 107/197 (54%), Gaps = 3/197 (1%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMS 79 K Q A P R+ W+SA+AG+GKT +L RVLRLLL + P LLCLT TKA AAEM+ Sbjct: 8 KENQAHAVHPQRTVWLSASAGTGKTQVLSARVLRLLLQDGVEPEQLLCLTFTKAGAAEMA 67 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG-LKVQTIHA 138 RV E++ +W L + L+ ++ I G + +++AR +L+ PGG L+++TIHA Sbjct: 68 TRVNEVLASWVRLPEIELAQQLRAI-GAPFDPGTVARARSRFAAVLDCPGGGLRIETIHA 126 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC+ ++ FP+EA + ++ L+ + L +EEL A + Sbjct: 127 FCQWLLASFPVEAGLRPGTRAMEDRDRALLVRQVLAEMLVEAGERGDEELLDALATLSRR 186 Query: 199 SNDEDIETLISDIISNR 215 +++ +E + S R Sbjct: 187 MSEDQVEAFLLRCASAR 203 >gi|294011636|ref|YP_003545096.1| putative UvrD/Rep helicase [Sphingobium japonicum UT26S] gi|292674966|dbj|BAI96484.1| putative UvrD/Rep helicase [Sphingobium japonicum UT26S] Length = 1147 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 64/164 (39%), Positives = 97/164 (59%), Gaps = 6/164 (3%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 W+SA+AG+GKTH+L RV RLLL P +LCLT TKA AAEM+ RV + + AW + + Sbjct: 30 WLSASAGTGKTHVLTARVFRLLLQGVRPENILCLTFTKAGAAEMADRVHDRLAAWVLMDE 89 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILE-TPGGLKVQTIHAFCEAIMQQFPLEANI 153 L ++ + G++ ++AR L +LE T GGL++QTIH FC+ ++ FPLEA++ Sbjct: 90 ADLFHDLEAL-GEESGPEARNRARRLFAEVLESTGGGLRIQTIHGFCQQLLTAFPLEADL 148 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 F D+ + L + TLA + + E+ KA + L+ Sbjct: 149 PPGFRPLDQREQATL----ARQTLADMAVVAQEQHDKALMDALQ 188 >gi|67458566|ref|YP_246190.1| ATP-dependent helicase [Rickettsia felis URRWXCal2] gi|67004099|gb|AAY61025.1| ATP-dependent helicase [Rickettsia felis URRWXCal2] Length = 815 Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 61/139 (43%), Positives = 81/139 (58%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q ASDP S WVSA+AG+GKT IL R LRLL+ P+ +LCLT T AA+ EM R+ Sbjct: 5 QQQASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPANILCLTFTNAASIEMQARIN 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + S + L E+ + G KP ++ A+ L IL + L + TIHAFC+ I Sbjct: 65 SRLKHLSLCDTKKLEEELFLMSGNKPLPQEIENAKTLYDKILNSNEPLNIYTIHAFCQKI 124 Query: 144 MQQFPLEANITSHFAIADE 162 ++ FPLEA IT F I +E Sbjct: 125 LKTFPLEAGITPEFKILEE 143 >gi|157803400|ref|YP_001491949.1| ATP-dependent helicase [Rickettsia canadensis str. McKiel] gi|157784663|gb|ABV73164.1| ATP-dependent helicase [Rickettsia canadensis str. McKiel] Length = 872 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 60/136 (44%), Positives = 81/136 (59%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 ASDP S WVSA+AG+GKT +L R LRLL+ P+ +LCLT T AAA EM R+ + Sbjct: 8 ASDPKYSVWVSASAGTGKTKVLTDRFLRLLIKGVEPANILCLTFTNAAAVEMQARINSKL 67 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 S + E L E+ + G KP + ++ A+ L IL + L + TIHAFC+ I++ Sbjct: 68 KYLSLCNAEKLEEELFLMLGNKPLQPELENAKTLYDKILNSNEPLNIYTIHAFCQKILKT 127 Query: 147 FPLEANITSHFAIADE 162 PLEA IT F I +E Sbjct: 128 CPLEAGITPEFKILEE 143 >gi|157964875|ref|YP_001499699.1| ATP-dependent helicase [Rickettsia massiliae MTU5] gi|157844651|gb|ABV85152.1| ATP-dependent helicase [Rickettsia massiliae MTU5] Length = 822 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 61/136 (44%), Positives = 79/136 (58%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 ASDP S WVSA+AG+GKT IL R LRLL+ PS +LCLT T AAA EM R+ + Sbjct: 8 ASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRINSRL 67 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 S + E L + + G KP+ + A+ L IL + L + TIHAFC+ I++ Sbjct: 68 KYLSLCNAEKLEEALFLMSGNKPSPQETENAKTLYDKILNSNKLLNIYTIHAFCQKILKT 127 Query: 147 FPLEANITSHFAIADE 162 PLEA IT F I +E Sbjct: 128 VPLEAGITPEFKILEE 143 >gi|51473902|ref|YP_067659.1| ATP-dependent helicase/nuclease [Rickettsia typhi str. Wilmington] gi|51460214|gb|AAU04177.1| ATP-dependent helicase/nuclease [Rickettsia typhi str. Wilmington] Length = 823 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 68/181 (37%), Positives = 100/181 (55%), Gaps = 10/181 (5%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 AS+P S WVSA+AG+GKT IL+ R LRLL+ P+ +LCLT T AAA EM R+ + Sbjct: 8 ASNPNTSVWVSASAGTGKTKILIDRFLRLLITGTEPTNILCLTFTNAAAIEMQARINSKL 67 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + E L+ E+ + G KP ++ + L +L + L + TIHAFC+ I++ Sbjct: 68 KHLALCDTEKLANELFLMSGNKPLAQEIENTKTLYYKLLNSHEPLNIYTIHAFCQKILKT 127 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKK--------STLASIMLDNNEE--LKKAFYEIL 196 FPLEA IT F I +E + + + + K + L I+L+ E L+ F EI+ Sbjct: 128 FPLEAGITPEFKILEETKLQDIFLKIKNEIYLSDEHNKLIQILLNRFHEMTLQDIFTEII 187 Query: 197 E 197 E Sbjct: 188 E 188 >gi|329113820|ref|ZP_08242591.1| ATP-dependent helicase/nuclease subunit A [Acetobacter pomorum DM001] gi|326696830|gb|EGE48500.1| ATP-dependent helicase/nuclease subunit A [Acetobacter pomorum DM001] Length = 1190 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 67/172 (38%), Positives = 108/172 (62%), Gaps = 11/172 (6%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL----------LLANAHPSTLL 66 ISQ ++Q LASDP+ S +VSA+AGSGKT +L+ R+LRL + + P+ +L Sbjct: 13 ISQANAQQALASDPSASVFVSASAGSGKTKLLIDRLLRLMLPRLAEDGSIQPGSSPARIL 72 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 CLT TKAAAAEMS R+ + + W L DE L E+ + +++ +AR L +L+ Sbjct: 73 CLTFTKAAAAEMSIRLQKRLGRWVTLLDEELDKELAGLYVPCTDET-RRRARALFAEVLD 131 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 PGG+++ TIHAFC++++++FPLEA++ HF + +E + ++ ++ L Sbjct: 132 LPGGMRIGTIHAFCQSLLRRFPLEASMNPHFTVMEETDASLALQSCVEAILG 183 >gi|15604569|ref|NP_221087.1| ATP-dependent nuclease subunit A (addA) [Rickettsia prowazekii str. Madrid E] gi|3861264|emb|CAA15163.1| ATP-DEPENDENT NUCLEASE SUBUNIT A (addA) [Rickettsia prowazekii] gi|292572376|gb|ADE30291.1| ATP-dependent helicase [Rickettsia prowazekii Rp22] Length = 822 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 58/136 (42%), Positives = 81/136 (59%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 AS+P S WVSA+AG+GKT IL+ R LRLL+ P+ +LCLT T AAA EM R+ + Sbjct: 8 ASNPNTSVWVSASAGTGKTKILIDRFLRLLITGTEPTNILCLTFTNAAAIEMQARINSKL 67 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + E L E+ + G KP +++ + L +L + L + TIHAFC+ I++ Sbjct: 68 KYLALCDAEKLENELFLMSGNKPLPQEIANTKTLYYKLLNSHEPLNIYTIHAFCQKILKT 127 Query: 147 FPLEANITSHFAIADE 162 FPLEA IT F I +E Sbjct: 128 FPLEAGITPEFKILEE 143 >gi|91205173|ref|YP_537528.1| ATP-dependent helicase [Rickettsia bellii RML369-C] gi|157827491|ref|YP_001496555.1| ATP-dependent helicase [Rickettsia bellii OSU 85-389] gi|91068717|gb|ABE04439.1| ATP-dependent helicase [Rickettsia bellii RML369-C] gi|157802795|gb|ABV79518.1| ATP-dependent helicase [Rickettsia bellii OSU 85-389] Length = 809 Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 69/199 (34%), Positives = 109/199 (54%), Gaps = 6/199 (3%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q ASDP S WVSA+AG+GKT IL R LRLL+ + +LCLT T AA+ EM R+ Sbjct: 5 QQQASDPDYSIWVSASAGTGKTKILTDRFLRLLIKGVNFQNILCLTFTNAASIEMQLRIS 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + +S + L E+ + G+KP ++ A++L +L+ L + TIHAFC+ I Sbjct: 65 NKLKTFSLCDPKQLEQELFLMSGQKPLALELENAKNLYSKLLDNNEPLNIYTIHAFCQKI 124 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ FP+EA IT F I +E Q + + + + S ++N+ +K EI+ Sbjct: 125 LKIFPVEAGITPEFQILEETQLQDIFLKIRNEIYLSD--EHNDLIKTLLNRFHEIT---- 178 Query: 204 IETLISDIISNRTALKLIF 222 ++ + S+II + K +F Sbjct: 179 LQDIFSEIIDEKIKFKKLF 197 >gi|85373841|ref|YP_457903.1| ATP-dependent exoDNAse beta subunit [Erythrobacter litoralis HTCC2594] gi|84786924|gb|ABC63106.1| ATP-dependent exoDNAse beta subunit [Erythrobacter litoralis HTCC2594] Length = 1150 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 65/174 (37%), Positives = 106/174 (60%), Gaps = 7/174 (4%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 L+ + Q A DP S W+SA+AG+GKT +L RVLRLLL + P +LLCLT TKA Sbjct: 6 LVFPLEGNQAAAVDPRDSVWLSASAGTGKTQVLSARVLRLLLQKHCEPESLLCLTFTKAG 65 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKV 133 AAEM+ RV +++ +W + D L+A++ I G + + ++AR L +L+ P GGL++ Sbjct: 66 AAEMATRVNDVLASWVRMKDGDLAADLKAI-GAPIDDATRARARTLFAKVLDCPGGGLRI 124 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 TIHAF + ++ FP E+++ A E++ ++L+ + L+ ++L E+ Sbjct: 125 DTIHAFSQWLLAAFPEESDLVPG-TRAMEDRERELL---AREVLSELLLAAEED 174 >gi|296283899|ref|ZP_06861897.1| ATP-dependent exoDNAse beta subunit [Citromicrobium bathyomarinum JL354] Length = 1158 Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 65/168 (38%), Positives = 95/168 (56%), Gaps = 3/168 (1%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHR 81 EQ A+DP S W+SA+AG+GKT +L RVLRLLL P ++LCLT TKA AAEM+ R Sbjct: 3 EQGHAADPGHSVWLSASAGTGKTQVLSARVLRLLLQPGVEPGSILCLTFTKAGAAEMATR 62 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIHAFC 140 V E + W + + +L+ + I G K + + ++ AR L +L+ P GGL++ TIHAF Sbjct: 63 VNETLARWVRMEETLLAQHLRAI-GAKVDPTTLAHARTLFTRVLDCPGGGLRIDTIHAFA 121 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + ++ FP EA + D+ L E +A+ +N L Sbjct: 122 QYLLAAFPEEAGLEPGTVAMDDRTRGLLAREVLTELVANADEADNSAL 169 >gi|42520239|ref|NP_966154.1| UvrD/Rep/AddA family helicase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409977|gb|AAS14088.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of Drosophila melanogaster] Length = 1089 Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 60/146 (41%), Positives = 90/146 (61%), Gaps = 15/146 (10%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A +P S WV+A+AG+GKT IL+ RVLRLLL N +LCLT T AAA EM +R+ I+ Sbjct: 21 AINPNFSVWVNASAGTGKTKILIDRVLRLLLENKR--NILCLTFTNAAANEMENRIHSIL 78 Query: 87 TAWSHLSDEILSAEITKIQ-----------GKKPNKSDMSKARHLLITILETPGGLKVQT 135 + W+ SD +L+A++ ++ G + NK +++AR L + LE GL +QT Sbjct: 79 SKWAICSDSVLAADLEQLDFFPMSSQCVTLGSRKNKDYLTRARRLF-SELENL-GLTIQT 136 Query: 136 IHAFCEAIMQQFPLEANITSHFAIAD 161 IHAFC ++ FP+EA I + +++ Sbjct: 137 IHAFCYKLISSFPIEAGIAPNCTLSE 162 >gi|85708411|ref|ZP_01039477.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. NAP1] gi|85689945|gb|EAQ29948.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. NAP1] Length = 369 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 59/150 (39%), Positives = 93/150 (62%), Gaps = 3/150 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 QL A++P + W+SA+AG+GKT +L RVLRLLL PS +LCLT TKA AAEM++R+ Sbjct: 12 QLGAANPRDNVWLSASAGTGKTQVLSARVLRLLLTPGVEPSQILCLTFTKAGAAEMANRI 71 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIHAFCE 141 ++ W L L+ E+ + G + +++AR L ++L+ P GGL++ TIHAF + Sbjct: 72 NAVLARWVRLEAGALARELKHL-GADFDPETLARARTLFASVLDCPGGGLRIDTIHAFSQ 130 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEE 171 ++ FP EA++T ++ + + L E Sbjct: 131 WLLGNFPEEADLTPGARPMEDRERELLARE 160 >gi|326387825|ref|ZP_08209431.1| UvrD/REP helicase [Novosphingobium nitrogenifigens DSM 19370] gi|326207871|gb|EGD58682.1| UvrD/REP helicase [Novosphingobium nitrogenifigens DSM 19370] Length = 1159 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 60/148 (40%), Positives = 90/148 (60%), Gaps = 4/148 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 Q+ A DP R+ W+SA+AG+GKT +L RVLRLLL + P +LCLT TKA AAEM+ R+ Sbjct: 18 QMHAVDPDRTVWLSASAGTGKTQVLTSRVLRLLLQPDVEPDQILCLTFTKAGAAEMATRI 77 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIHAFCE 141 E + W + D L+ + I G + + +AR +L+ P GGL+++TIHAF + Sbjct: 78 GEKLADWVRMDDVTLATHLQAI-GAPFDPVALDRARSRFAAVLDCPGGGLRIETIHAFSQ 136 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLI 169 ++ FP EA + A A E++ + L+ Sbjct: 137 WLLSAFPEEAGLRPG-ARAMEDRDRDLL 163 >gi|149184293|ref|ZP_01862611.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. SD-21] gi|148831613|gb|EDL50046.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. SD-21] Length = 1159 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 64/177 (36%), Positives = 103/177 (58%), Gaps = 7/177 (3%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMS 79 K Q L+ +P S W+SA+AG+GKT +L RVLRLLL A PS +LCLT TKA AAEM+ Sbjct: 9 KDAQGLSVNPEESVWLSASAGTGKTQVLSARVLRLLLQPGADPSQILCLTFTKAGAAEMA 68 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIHA 138 RV ++ W + L+ E+ + G + S+AR L +L+ P GGL++ TIHA Sbjct: 69 VRVNAVLARWVRMDAAQLAKELGYL-GASIDPETQSRARSLFARVLDCPGGGLRIDTIHA 127 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 F + ++ FP EA + + E++ + L+ + L+ ++ + + +++A E+ Sbjct: 128 FAQYLLGAFPSEAGVLPG-SQPMEDRDRDLLS---RDVLSDLLSEGDPHIREAVAEM 180 >gi|225630221|ref|YP_002727012.1| helicase, UvrD/Rep family [Wolbachia sp. wRi] gi|225592202|gb|ACN95221.1| helicase, UvrD/Rep family [Wolbachia sp. wRi] Length = 1099 Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 90/160 (56%), Gaps = 29/160 (18%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A +P S WV+A+AG+GKT IL+ RVLRLLL N +LCLT T AAA EM +R+ I+ Sbjct: 5 AINPNFSVWVNASAGTGKTKILIDRVLRLLLENKR--NILCLTFTNAAANEMENRIHSIL 62 Query: 87 TAWSHLSDEILSAEITKIQ-------------------------GKKPNKSDMSKARHLL 121 + W+ SD +L+A++ ++ G + NK +++AR L Sbjct: 63 SKWAICSDSVLAADLEQLDFFPMSSQCVTLGSQHPYLSSQCVTLGSRKNKDYLTRARRLF 122 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIAD 161 + LE GL +QTIHAFC ++ FP+EA I + +++ Sbjct: 123 -SELENL-GLTIQTIHAFCYKLISSFPIEAGIAPNCTLSE 160 >gi|190570633|ref|YP_001974991.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019116|ref|ZP_03334923.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356905|emb|CAQ54283.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995225|gb|EEB55866.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 1089 Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 58/137 (42%), Positives = 84/137 (61%), Gaps = 6/137 (4%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A +P S WVSA+AG+GKT IL+ RVLRLLL N +LCLT T AAA EM R+ + Sbjct: 5 AINPNFSVWVSASAGTGKTKILIDRVLRLLLENKR--NILCLTFTNAAANEMEDRIYSTL 62 Query: 87 TAWSHLSDEILSAEITKIQG--KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + W+ + IL A++ ++ + NK +++AR L + LE GL +QTIHAFC ++ Sbjct: 63 SKWAIYPEGILVADLEQLAQCVTRENKDYLTRARRLF-SELENL-GLNIQTIHAFCYKLI 120 Query: 145 QQFPLEANITSHFAIAD 161 FP EA I + +++ Sbjct: 121 SSFPTEAGIAPNCTLSE 137 >gi|220935292|ref|YP_002514191.1| UvrD/REP helicase [Thioalkalivibrio sp. HL-EbGR7] gi|219996602|gb|ACL73204.1| UvrD/REP helicase [Thioalkalivibrio sp. HL-EbGR7] Length = 1147 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 59/162 (36%), Positives = 92/162 (56%), Gaps = 7/162 (4%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 +LA+DP+ + V A+AGSGKT++LV R+LRLLLA A P +L +T T+ AA EM R+ E Sbjct: 15 MLATDPSLNISVFASAGSGKTYLLVTRILRLLLAGARPDGILAVTFTRLAAGEMQSRLTE 74 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + W L D L + + G + + +AR L L ++ T HAFC+ ++ Sbjct: 75 RLREWQTLDDTALDRALADM-GVSVDDAVRERARRLFEQTLLADRPVRATTFHAFCQDLL 133 Query: 145 QQFPLEANITSHFAIADEEQSKK------LIEEAKKSTLASI 180 +FPLEA + F +AD E+ + L+ EA ++ A++ Sbjct: 134 ARFPLEARVPPGFELADNERELQDRAWDALVSEATRAPDATV 175 >gi|99035028|ref|ZP_01314824.1| hypothetical protein Wendoof_01000338 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 438 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/160 (37%), Positives = 89/160 (55%), Gaps = 29/160 (18%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A +P S WV+A+AG+GKT IL+ RVLRLLL N +LCLT T AAA EM +R+ I+ Sbjct: 5 AINPNFSVWVNASAGTGKTKILIDRVLRLLLENKR--NILCLTFTNAAANEMENRIHSIL 62 Query: 87 TAWSHLSDEILSAEITKIQ-------------------------GKKPNKSDMSKARHLL 121 + W+ SD +L+A++ ++ G + NK +++AR L Sbjct: 63 SKWAICSDSVLAADLEQLDFFPMSSQCVTLGSQHPYLSSQCVTLGSRKNKDYLTRARRLF 122 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIAD 161 + LE GL +QTIHAFC + FP+EA I + +++ Sbjct: 123 -SELENL-GLTIQTIHAFCYKSISSFPIEAGIAPNCTLSE 160 >gi|60117407|gb|AAX14460.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of Drosophila mojavensis] Length = 208 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 64/176 (36%), Positives = 95/176 (53%), Gaps = 33/176 (18%) Query: 7 FQEHSETIDLISQTKSEQLL----ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62 F + +L++ K LL A +P S WV+A+AG+GKT IL+ RVLRLLL N Sbjct: 35 FLHYMYNANLVNFYKVLALLMRSNAINPNFSVWVNASAGTGKTKILIDRVLRLLLENKR- 93 Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ----------------- 105 +LCLT T AAA EM +R+ I++ W+ SD +L+A++ ++ Sbjct: 94 -NILCLTFTNAAANEMENRIHSILSKWAICSDSVLAADLEQLDFFPMSSQCVTLGSQHPY 152 Query: 106 --------GKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 G + NK +++AR L + LE GL +QTIHAFC ++ FP+EA + Sbjct: 153 LSSQCVTLGSRKNKDYLTRARRLF-SELENL-GLTIQTIHAFCYKLISSFPIEAGM 206 >gi|162146539|ref|YP_001600998.1| putative UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5] gi|161785114|emb|CAP54658.1| putative UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5] Length = 1184 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 99/181 (54%), Gaps = 17/181 (9%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS---------- 63 +D I + Q ASDP S +VSA+AGSGKT +L+ R+LRL+L P+ Sbjct: 4 LDAIGLANARQGEASDPGASVFVSASAGSGKTKLLIDRLLRLMLPRPAPTRGGTGRGTCL 63 Query: 64 ------TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA 117 + CLT TKAAAAEM+ R+ + + + + T + + D + Sbjct: 64 RGRTRRAIQCLTFTKAAAAEMAIRLQKPAGELGNAARRV-PGPGTGLPVGPAVRGDTPRG 122 Query: 118 RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 + +L+ PGG+++ TIHAFC++++++FP+EA I+ HF + ++ ++ + E+ ++ + Sbjct: 123 TRMFARVLDLPGGMRIGTIHAFCQSLLRRFPVEAAISPHFTLVEDTDARIAMGESVEAVV 182 Query: 178 A 178 Sbjct: 183 G 183 >gi|269958568|ref|YP_003328355.1| putative exodeoxyribonuclease V [Anaplasma centrale str. Israel] gi|269848397|gb|ACZ49041.1| putative exodeoxyribonuclease V [Anaplasma centrale str. Israel] Length = 867 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 83/144 (57%), Gaps = 6/144 (4%) Query: 23 EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 +Q A+DP R W+SA+AG+GKT +LV RV+RL+++ +LCLT T AA E+ R Sbjct: 9 QQQSATDPEREFVWISASAGTGKTKLLVHRVIRLMVSGQR--NILCLTFTNAAVHEIRER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V I+ W L E L + ++ ++ + +AR L + P LK+QT+H+FC Sbjct: 67 VYGIVAEWLALPKEELVNRLREVCYQQIDHQHYVRARRLF---FDVPSILKIQTVHSFCH 123 Query: 142 AIMQQFPLEANITSHFAIADEEQS 165 +++ FP E +++ F + + +S Sbjct: 124 SLVASFPAETGVSADFEMRELSES 147 >gi|56417018|ref|YP_154092.1| hypothetical protein AM927 [Anaplasma marginale str. St. Maries] gi|56388250|gb|AAV86837.1| hypothetical protein AM927 [Anaplasma marginale str. St. Maries] Length = 867 Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 83/144 (57%), Gaps = 6/144 (4%) Query: 23 EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 +Q A+DP R W+SA+AG+GKT +LV RV+RL+++ +LCLT T AA E+ R Sbjct: 9 QQQSATDPEREFVWISASAGTGKTKLLVHRVIRLMVSGQR--NILCLTFTNAAVHEIRER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V I+ W L E L + ++ ++ + +AR L + P LK+QT+H+FC Sbjct: 67 VYGIVAEWLALPKEELVNRLREVCYQQIDHQHYVRARRLF---FDVPSILKIQTVHSFCH 123 Query: 142 AIMQQFPLEANITSHFAIADEEQS 165 +++ FP E +++ F + + +S Sbjct: 124 SLVASFPAETGVSADFEMRELSES 147 >gi|255003370|ref|ZP_05278334.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale str. Puerto Rico] Length = 867 Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 6/136 (4%) Query: 23 EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 +Q A+DP R W+SA+AG+GKT +LV RV+RL+++ +LCLT T AA E+ R Sbjct: 9 QQQSATDPEREFVWISASAGTGKTKLLVHRVIRLMVSGQR--NILCLTFTNAAVHEIRER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V I+ W L E L + ++ ++ + +AR L + P LK+QT+H+FC Sbjct: 67 VYGIVAEWLALPKEELVNRLREVCYQQIDHQHYVRARRLF---FDVPSILKIQTVHSFCH 123 Query: 142 AIMQQFPLEANITSHF 157 +++ FP E +++ F Sbjct: 124 SLVASFPAETGVSADF 139 >gi|254995195|ref|ZP_05277385.1| hypothetical protein AmarM_04376 [Anaplasma marginale str. Mississippi] Length = 866 Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 6/136 (4%) Query: 23 EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 +Q A+DP R W+SA+AG+GKT +LV RV+RL+++ +LCLT T AA E+ R Sbjct: 9 QQQSATDPEREFVWISASAGTGKTKLLVHRVIRLMVSGQR--NILCLTFTNAAVHEIRER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V I+ W L E L + ++ ++ + +AR L + P LK+QT+H+FC Sbjct: 67 VYGIVAEWLALPKEELVNRLREVCYQQIDHQHYVRARRLF---FDVPSILKIQTVHSFCH 123 Query: 142 AIMQQFPLEANITSHF 157 +++ FP E +++ F Sbjct: 124 SLVASFPAETGVSADF 139 >gi|222475386|ref|YP_002563803.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale str. Florida] gi|255004493|ref|ZP_05279294.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale str. Virginia] gi|222419524|gb|ACM49547.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale str. Florida] Length = 867 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 6/136 (4%) Query: 23 EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 +Q A+DP R W+SA+AG+GKT +LV RV+RL+++ +LCLT T AA E+ R Sbjct: 9 QQQSATDPEREFVWISASAGTGKTKLLVHRVIRLMVSGQR--NILCLTFTNAAVHEIRER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V I+ W L E L + ++ ++ + +AR L + P LK+QT+H+FC Sbjct: 67 VYGIVAEWLALPKEELVNRLREVCYQQIDHQHYVRARRLF---FDVPSILKIQTVHSFCH 123 Query: 142 AIMQQFPLEANITSHF 157 +++ FP E +++ F Sbjct: 124 SLVASFPAETGVSADF 139 >gi|58617374|ref|YP_196573.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium str. Gardel] gi|58416986|emb|CAI28099.1| Putative Exodeoxyribonuclease V beta chain [Ehrlichia ruminantium str. Gardel] Length = 857 Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 79/131 (60%), Gaps = 4/131 (3%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 W+SA+AG+GKT ILV RVL+LL+ +LCLT T AAA EM+ R+ ++AW+ L+D Sbjct: 14 WISASAGTGKTRILVNRVLKLLITGHQ--NILCLTFTNAAAYEMTERIHSTLSAWTTLTD 71 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 L ++ +I ++ +AR L +I L ++TIH+FC ++ FP+EA I+ Sbjct: 72 TELKTDLQEIIHSNITAQELHQARRLFNSIHNI--SLSIKTIHSFCYQLISAFPIEAGIS 129 Query: 155 SHFAIADEEQS 165 + + D +S Sbjct: 130 PNCIVKDLSES 140 >gi|57239354|ref|YP_180490.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium str. Welgevonden] gi|58579320|ref|YP_197532.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium str. Welgevonden] gi|57161433|emb|CAH58357.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium str. Welgevonden] gi|58417946|emb|CAI27150.1| Putative Exodeoxyribonuclease V beta chain [Ehrlichia ruminantium str. Welgevonden] Length = 857 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 79/131 (60%), Gaps = 4/131 (3%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 W+SA+AG+GKT ILV RVL+LL+ +LCLT T AAA EM+ R+ ++AW+ L+D Sbjct: 14 WISASAGTGKTRILVNRVLKLLITGHQ--NILCLTFTNAAAYEMTERIHSTLSAWTTLTD 71 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 L ++ +I ++ +AR L +I L ++TIH+FC ++ FP+EA I+ Sbjct: 72 TELKTDLQEIIHSNITVQELHQARRLFNSIHNI--SLSIKTIHSFCYQLISAFPIEAGIS 129 Query: 155 SHFAIADEEQS 165 + + D +S Sbjct: 130 PNCIVKDLSES 140 >gi|73667245|ref|YP_303261.1| UvrD/REP helicase [Ehrlichia canis str. Jake] gi|72394386|gb|AAZ68663.1| UvrD/REP helicase [Ehrlichia canis str. Jake] Length = 854 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/141 (37%), Positives = 83/141 (58%), Gaps = 5/141 (3%) Query: 26 LASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 +A++P + W+SA+AG+GKT LV RVLRLL+ H + +LCLT T AAA EM+ R+ Sbjct: 4 IATNPFYNFIWISASAGTGKTRTLVNRVLRLLIT-GHKN-ILCLTFTNAAAHEMTERIHS 61 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I++ W+ L +E L E+ I ++ +AR L + L ++TIH+FC ++ Sbjct: 62 ILSTWTILKNEELKKELQDIIPTNITLTEYKRARELFNNLQNL--SLSIKTIHSFCYQLI 119 Query: 145 QQFPLEANITSHFAIADEEQS 165 FP+E I+ + I D +S Sbjct: 120 STFPIETGISPNCTIKDFSES 140 >gi|309782347|ref|ZP_07677073.1| UvrD/REP helicase [Ralstonia sp. 5_7_47FAA] gi|308918883|gb|EFP64554.1| UvrD/REP helicase [Ralstonia sp. 5_7_47FAA] Length = 1173 Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 58/191 (30%), Positives = 102/191 (53%), Gaps = 3/191 (1%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP RS V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM R+L+I+ Sbjct: 22 ACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLDIL 81 Query: 87 TAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + DE + E I + ++ + + AR L +LE+P + + T H + ++++ Sbjct: 82 AQLAGADDESVVRELIARTVDERDAPALIETARGLYARVLESPSRMAIDTFHGWFGSLLR 141 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 PL + + ++ E + +L EA ++ +++ +L+ A+ + ++ D Sbjct: 142 GAPLSSGVQQGASL--REDAGRLRREAWAPFWRGLLAEDHADLRAAYESLADLVGDFQAG 199 Query: 206 TLISDIISNRT 216 L+ + R+ Sbjct: 200 RLLDAMFHQRS 210 >gi|68171208|ref|ZP_00544613.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa] gi|67999363|gb|EAM86007.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa] Length = 860 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 80/141 (56%), Gaps = 5/141 (3%) Query: 26 LASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 +A++P S W+SA+AG+GKT ILV RVLRLL+ H + +LCLT T AA EM+ R+ Sbjct: 4 IATNPFYSFIWISASAGTGKTKILVNRVLRLLVT-GHKN-ILCLTFTNTAAHEMTERIHS 61 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 II+ W+ L +E L + I + +AR L + L ++TIH+FC ++ Sbjct: 62 IISTWAILKNEELKKALKDIIPTNITPKEYKRARELFNNLQNV--SLSIKTIHSFCYQLI 119 Query: 145 QQFPLEANITSHFAIADEEQS 165 FP+E I +I D +S Sbjct: 120 STFPIETGIAPDCSIKDFSES 140 >gi|88658223|ref|YP_507207.1| ATP-dependent DNA helicase UvrD [Ehrlichia chaffeensis str. Arkansas] gi|88599680|gb|ABD45149.1| ATP-dependent DNA helicase, UvrD/Rep family [Ehrlichia chaffeensis str. Arkansas] Length = 860 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 80/141 (56%), Gaps = 5/141 (3%) Query: 26 LASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 +A++P S W+SA+AG+GKT ILV RVLRLL+ H + +LCLT T AA EM+ R+ Sbjct: 4 IATNPFYSFIWISASAGTGKTKILVNRVLRLLVT-GHKN-ILCLTFTNTAAHEMTERIHS 61 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 II+ W+ L +E L + I + +AR L + L ++TIH+FC ++ Sbjct: 62 IISTWAILKNEELKKALKDIIPTNITPKEYKRARELFNNLQNV--SLSIKTIHSFCYQLI 119 Query: 145 QQFPLEANITSHFAIADEEQS 165 FP+E I +I D +S Sbjct: 120 STFPIETGIAPDCSIKDFSES 140 >gi|241662730|ref|YP_002981090.1| UvrD/REP helicase [Ralstonia pickettii 12D] gi|240864757|gb|ACS62418.1| UvrD/REP helicase [Ralstonia pickettii 12D] Length = 1173 Score = 92.4 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 58/191 (30%), Positives = 102/191 (53%), Gaps = 3/191 (1%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP RS V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM R+L+I+ Sbjct: 22 ACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLDIL 81 Query: 87 TAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + DE + E I + ++ + + AR L +LE+P + + T H + ++++ Sbjct: 82 AQLAGADDEGVVRELIARTVDERDAPALIETARGLYARVLESPSRMAIDTFHGWFGSLLR 141 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 PL + + ++ E + +L EA ++ +++ +L+ A+ + ++ D Sbjct: 142 GAPLSSGVQQGASL--REDAGRLRREAWAPFWRGLLAEDHADLRAAYESLADLVGDFQAG 199 Query: 206 TLISDIISNRT 216 L+ + R+ Sbjct: 200 RLLDAMFHQRS 210 >gi|83749759|ref|ZP_00946735.1| ATP-dependent nuclease subunit A [Ralstonia solanacearum UW551] gi|207743470|ref|YP_002259862.1| homologous recombinational repair protein, atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) [Ralstonia solanacearum IPO1609] gi|83723579|gb|EAP70781.1| ATP-dependent nuclease subunit A [Ralstonia solanacearum UW551] gi|206594867|emb|CAQ61794.1| homologous recombinational repair protein, atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) [Ralstonia solanacearum IPO1609] Length = 1177 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 58/194 (29%), Positives = 104/194 (53%), Gaps = 9/194 (4%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP RS V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM R+L+I+ Sbjct: 22 ACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLDIL 81 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSD----MSKARHLLITILETPGGLKVQTIHAFCEA 142 + D +A + ++ + ++ D ++ AR L +LE+P + + T H + Sbjct: 82 AQLAGADD---AAAVRELVARTVDERDAPGLVATARGLYARVLESPSRMAIDTFHGWFGG 138 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 +++ PL + + ++ E + +L EA ++ + + EL+ A+ ++++ D Sbjct: 139 LLRGAPLSSGVPQGASL--REDAGRLRREAWAPFWRRLLAEEHAELRAAYDTLVDLVGDF 196 Query: 203 DIETLISDIISNRT 216 L+ + + R+ Sbjct: 197 QAGRLLDAMFAQRS 210 >gi|207723138|ref|YP_002253537.1| homologous recombinational repair protein, atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) [Ralstonia solanacearum MolK2] gi|206588331|emb|CAQ35294.1| homologous recombinational repair protein, atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) [Ralstonia solanacearum MolK2] Length = 1177 Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 58/194 (29%), Positives = 104/194 (53%), Gaps = 9/194 (4%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP RS V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM R+L+I+ Sbjct: 22 ACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLDIL 81 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSD----MSKARHLLITILETPGGLKVQTIHAFCEA 142 + D +A + ++ + ++ D ++ AR L +LE+P + + T H + Sbjct: 82 AQLAGADD---AAAVRELVARTVDERDAPGLVATARGLYARVLESPSRMAIDTFHGWFGG 138 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 +++ PL + + ++ E + +L EA ++ + + EL+ A+ ++++ D Sbjct: 139 LLRGAPLSSGVPQGASL--REDAGRLRREAWAPFWRRLLAEEHAELRAAYDTLVDLVGDF 196 Query: 203 DIETLISDIISNRT 216 L+ + + R+ Sbjct: 197 QAGRLLDAMFAQRS 210 >gi|187928127|ref|YP_001898614.1| UvrD/REP helicase [Ralstonia pickettii 12J] gi|187725017|gb|ACD26182.1| UvrD/REP helicase [Ralstonia pickettii 12J] Length = 1173 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 102/191 (53%), Gaps = 3/191 (1%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A +P RS V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM R+L+I+ Sbjct: 22 ACEPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLDIL 81 Query: 87 TAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + DE + E + + ++ + + AR L +LE+P + + T H + ++++ Sbjct: 82 AQLAAADDEGVVRELVARTVDERDAPALIETARGLYARVLESPSRMAIDTFHGWFGSLLR 141 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 PL + + ++ E + +L EA ++ +++ EL+ A+ + ++ D Sbjct: 142 GAPLSSGVQQGASL--REDAGRLRREAWAPFWRGLLAEDHAELRAAYETLADLVGDFQAG 199 Query: 206 TLISDIISNRT 216 L+ + R+ Sbjct: 200 RLLDAMFHQRS 210 >gi|300704439|ref|YP_003746042.1| helicase, uvrd subfamily [Ralstonia solanacearum CFBP2957] gi|299072103|emb|CBJ43435.1| putative helicase, uvrD subfamily [Ralstonia solanacearum CFBP2957] Length = 1177 Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 56/191 (29%), Positives = 101/191 (52%), Gaps = 3/191 (1%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP RS V A AGSGKT +LV R+LRLLLA A P+ +L +T T+ AA EM R+L+I+ Sbjct: 22 ACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPADILAITFTRKAAEEMRQRLLDIL 81 Query: 87 TAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + D + E + + ++ ++ AR L +LE+P + + T H + +++ Sbjct: 82 AQLAGADDAAVVRELVARTVDERDAPGLVAAARGLYARVLESPSRMAIDTFHGWFGGLLR 141 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 PL + + ++ E + +L EA ++ + + EL+ A+ ++++ D Sbjct: 142 GAPLSSGVPQGASL--REDAGRLRREAWAPFWRRLLAEEHAELRAAYDTLVDLVGDFQAG 199 Query: 206 TLISDIISNRT 216 L+ + + R+ Sbjct: 200 RLLDAMFAQRS 210 >gi|300691831|ref|YP_003752826.1| helicase, uvrD subfamily [Ralstonia solanacearum PSI07] gi|299078891|emb|CBJ51552.1| putative helicase, uvrD subfamily [Ralstonia solanacearum PSI07] Length = 1178 Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 3/191 (1%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP RS V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM R+L+I+ Sbjct: 22 ACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLDIL 81 Query: 87 TAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + D E + + ++ ++ AR L +LE+P + + T H + +++ Sbjct: 82 AQLAGADDAAAVRELVARTVDEREALGLVAVARGLYARVLESPSRMAIDTFHGWFGGLLR 141 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 PL + + ++ E + +L EA ++ + + EL+ A+ ++++ D Sbjct: 142 GAPLSSGVPQGASL--REDAGRLRREAWAPFWRRLLAEEHAELRAAYDALVDLVGDFQAG 199 Query: 206 TLISDIISNRT 216 L+ + + R+ Sbjct: 200 RLLDAMFAQRS 210 >gi|299067242|emb|CBJ38439.1| putative helicase, uvrD subfamily [Ralstonia solanacearum CMR15] Length = 1177 Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats. Identities = 56/191 (29%), Positives = 101/191 (52%), Gaps = 3/191 (1%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP RS V A AGSGKT +LV R+LRLLLA A P+ +L +T T+ AA EM R+L+I+ Sbjct: 22 ACDPLRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPADILAITFTRKAAEEMRQRLLDIL 81 Query: 87 TAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + D + E + + ++ ++ AR L +LE+P + + T H + +++ Sbjct: 82 AQLAGADDAAVVRELVARTVDEREAPGLVAVARGLYGRVLESPSRMAIDTFHGWFGGLLR 141 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 PL + + ++ E + +L EA ++ + + EL+ A+ ++++ D Sbjct: 142 GAPLSSGVPQGASL--REDAGRLRREAWAPFWRGLLAEEHAELRAAYDTLVDLVGDFQAG 199 Query: 206 TLISDIISNRT 216 L+ + + R+ Sbjct: 200 RLLDAMFAQRS 210 >gi|17545909|ref|NP_519311.1| hypothetical protein RSc1190 [Ralstonia solanacearum GMI1000] gi|17428204|emb|CAD14892.1| probable homologous recombinational repair protein, atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) [Ralstonia solanacearum GMI1000] Length = 1177 Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 3/191 (1%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP RS V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM R+L+ + Sbjct: 22 ACDPLRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLDSL 81 Query: 87 TAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + D + E + + ++ ++ AR L +LE+P + + T H + +++ Sbjct: 82 AQLAGADDAAVVRELVARTVDEREAPGLVAVARGLYGRVLESPSRMAIDTFHGWFGGLLR 141 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 PL + + ++ E + +L EA ++ + + EL+ A+ ++++ D Sbjct: 142 GAPLSSGVPQGASL--REDAGRLRREAWAPFWRRLLAEEHAELRAAYDTLVDLVGDFQAG 199 Query: 206 TLISDIISNRT 216 L+ + + R+ Sbjct: 200 RLLDAMFAQRS 210 >gi|149927015|ref|ZP_01915273.1| hypothetical protein LMED105_09177 [Limnobacter sp. MED105] gi|149824236|gb|EDM83456.1| hypothetical protein LMED105_09177 [Limnobacter sp. MED105] Length = 1078 Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 59/196 (30%), Positives = 101/196 (51%), Gaps = 6/196 (3%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 +A +P S V A AGSGKT +L R+ RLLL+ A P +L +T T+ AA EM R+ + Sbjct: 11 IACNPANSVVVEACAGSGKTWLLTARLFRLLLSGARPDQILAITFTRKAAQEMQERLFGL 70 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + + LSD+ LS +T+ +G N+++++KAR L +L G+ + T H + ++ Q Sbjct: 71 LRECALLSDDKLSTLLTE-RGAVANEANLNKARALAGEVLTNSRGVTIDTFHGWFASLCQ 129 Query: 146 QFPLEANITSHFAIADEEQSKKLI-EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204 PL S F+ E + L + + +L++ EL AF ++ + + Sbjct: 130 MAPL----ASGFSRQSEPTDQTLFWMDMAIDVFTANLLNDQSELLPAFDTLVSQMDRAVV 185 Query: 205 ETLISDIISNRTALKL 220 ++ ++NR A L Sbjct: 186 RQVLQHALTNRVACSL 201 >gi|58584432|ref|YP_198005.1| ATP-dependent exoDNAse (exonuclease V) beta subunit, RecB [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418748|gb|AAW70763.1| ATP-dependent exoDNAse (exonuclease V) beta subunit, RecB [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 1119 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 78/164 (47%), Gaps = 34/164 (20%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 +P S WV+A+AG+GKT IL+ RVLRLLL N + CLT T AAA EM R+ I++ Sbjct: 7 NPNFSVWVNASAGTGKTKILIDRVLRLLLENKR--NIFCLTFTNAAANEMESRIHNILSK 64 Query: 89 WSHLSDE-------------------------ILSAEITKIQGKKPNKSDMSKARHLLIT 123 W+ SD LS++ ++ + P + H LI Sbjct: 65 WAVCSDNELIASLEQLDLSLLLLQHHYPPSHPFLSSQCLTLRSRWPQTKNSEVFNHYLIQ 124 Query: 124 I------LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIAD 161 LE L +QT+HAFC ++ FP EA I + +++ Sbjct: 125 ARRLFSELEN-LDLTIQTVHAFCYKLISSFPAEAGIVPNCTLSE 167 >gi|291333833|gb|ADD93516.1| hypothetical protein [uncultured marine bacterium MedDCM-OCT-S04-C13] Length = 597 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 67/209 (32%), Positives = 101/209 (48%), Gaps = 30/209 (14%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP +S VSA AGSGKT ++ QRVLRLL P +LC+T T+ AAAEM+ R+ + Sbjct: 10 ALDPQQSFIVSAPAGSGKTGLITQRVLRLLRTVESPEQILCITFTRKAAAEMALRIHNAL 69 Query: 87 --TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + D+ A+I + + ++ + +++ P L++QTI FC I Sbjct: 70 RDALINPRPDDPYKAQIWDLAAAA-----IEHSKQMDWDLMDMPNRLRIQTIDGFCRYIA 124 Query: 145 QQFPLEA----------NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 QF LE NI S + IA KL E++ +++L + Sbjct: 125 SQFALETEIGVLPEPSDNIVSLYRIAARNLLDKLEEDSDTGRYVAVLLAHMG-------- 176 Query: 195 ILEISNDEDIETLISDIISNRTA-LKLIF 222 +N E E L+S+++SNR L LIF Sbjct: 177 ----NNIERCERLLSELLSNREQWLPLIF 201 >gi|90415966|ref|ZP_01223899.1| UvrD/REP helicase family protein [marine gamma proteobacterium HTCC2207] gi|90332340|gb|EAS47537.1| UvrD/REP helicase family protein [marine gamma proteobacterium HTCC2207] Length = 1147 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 20/204 (9%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP++S VSA AGSGKT ++ QRVLRLL +P +L +T T+ AA EM+ R+ + Sbjct: 13 ALDPSQSFIVSAPAGSGKTGLITQRVLRLLCTVENPEEILSITFTRKAAREMASRIHSAL 72 Query: 87 --TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 A++ D A+ + + + + R L +L+ PG L++QTI FC I Sbjct: 73 RQAAYTPRPDNEYEAQTWDLAA-----AAVERNRQLGWNLLDMPGRLRIQTIDGFCRYIA 127 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SN 200 QF LE + F E + I + A +LD EE ++ I N Sbjct: 128 SQFALE----TKFGPIPEPSEQPQIH---YQSAARALLDKIEEAGPVAEQLAVILVHTGN 180 Query: 201 D-EDIETLISDIISNRTA-LKLIF 222 D ETL+S+++ R L LI+ Sbjct: 181 DMARCETLLSELLGKREQWLPLIY 204 >gi|94970649|ref|YP_592697.1| DNA helicase/exodeoxyribonuclease V, subunit A [Candidatus Koribacter versatilis Ellin345] gi|94552699|gb|ABF42623.1| DNA helicase/exodeoxyribonuclease V, subunit A [Candidatus Koribacter versatilis Ellin345] Length = 1135 Score = 82.0 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 67/204 (32%), Positives = 111/204 (54%), Gaps = 13/204 (6%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAA 74 I+ E+ D TRS V A AGSGKT +L+QR L LL + P ++L +T T+ A Sbjct: 11 IAPDADERAKVLDATRSFIVQAPAGSGKTELLMQRYLTLLAHESVTTPESVLAITFTRKA 70 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM +RVL+ + + + + E A ++ +K M++ R + IL+ P L+++ Sbjct: 71 AAEMRNRVLKALESANGPAPESAHALLSWELARKV----MARDRAMGWNILQNPEQLEIR 126 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML-DNNEELKKAFY 193 T+ +FCE I + PL A + AIA E + L EA + TL +ML D E ++A Sbjct: 127 TVDSFCEKIANRTPLLAGLGRSPAIA--EDFEPLYSEAAQRTL--LMLGDEKAETREAMS 182 Query: 194 EILEISND--EDIETLISDIISNR 215 ++L ++ + ++ LI +++ R Sbjct: 183 QVLADQDNSFDRVQGLIVELLKRR 206 >gi|95929583|ref|ZP_01312325.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684] gi|95134280|gb|EAT15937.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684] Length = 1101 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 57/168 (33%), Positives = 89/168 (52%), Gaps = 8/168 (4%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 TIDL+ LA DPTRS V A AGSGKT +L+QR L LL P +L +T T+ Sbjct: 3 TIDLVDAPARR--LAVDPTRSCLVRAPAGSGKTELLIQRFLALLATVPRPDAILAITFTR 60 Query: 73 AAAAEMSHRVLE-IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM RVL+ ++ A L D+ + T + + + + L + + P L Sbjct: 61 KAAAEMRQRVLDALLAAQQPLPDQAGEHQRTTY---RLATAVLQRNETLAWNLFDHPQQL 117 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 ++QTI +F +++ + P + + AI+D Q ++L +A + LA+ Sbjct: 118 QIQTIDSFNASLVARMPWLSRLGGLPAISD--QPRQLYRQAVRQLLAA 163 >gi|319763161|ref|YP_004127098.1| uvrd/rep helicase [Alicycliphilus denitrificans BC] gi|317117722|gb|ADV00211.1| UvrD/REP helicase [Alicycliphilus denitrificans BC] Length = 1095 Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats. Identities = 59/201 (29%), Positives = 106/201 (52%), Gaps = 19/201 (9%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 +A DP RS V A AG+GKT +LV R+LR LL + P +L +T TK AA EM R+ E Sbjct: 21 IACDPARSVAVEACAGAGKTWMLVSRMLRALLDGSAPHEILAITFTKKAAGEMRQRLQEW 80 Query: 86 ITAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + ++H + E L E I + G + + + R+L +L + L+++T H++ A++ Sbjct: 81 LEQFAHAAPEDLEKELIARGIGTEAARGKREQLRNLYQQLLASGRPLQIRTFHSWFAALL 140 Query: 145 QQFPL----EANITSHFA-IADEEQSKKLI----------EEAKKSTLASIMLDNNEELK 189 PL E + +H+ + D+ Q+K + ++A ++ +I+ + + Sbjct: 141 STAPLALLQERGLPTHYELLEDDAQAKAEVWRPFLEAVAGDDALRADYEAIVAVHG---R 197 Query: 190 KAFYEILEISNDEDIETLISD 210 ++ LE + D+ +E L+SD Sbjct: 198 SQTHKALEAALDKRVEFLLSD 218 >gi|330825224|ref|YP_004388527.1| UvrD/REP helicase [Alicycliphilus denitrificans K601] gi|329310596|gb|AEB85011.1| UvrD/REP helicase [Alicycliphilus denitrificans K601] Length = 1095 Score = 80.1 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 59/201 (29%), Positives = 106/201 (52%), Gaps = 19/201 (9%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 +A DP RS V A AG+GKT +LV R+LR LL + P +L +T TK AA EM R+ E Sbjct: 21 IACDPARSVAVEACAGAGKTWMLVSRMLRALLDGSAPHEILAITFTKKAAGEMRQRLQEW 80 Query: 86 ITAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + ++H + E L E I + G + + + R+L +L + L+++T H++ A++ Sbjct: 81 LEQFAHAAPEDLEKELIARGIGLEAARGKREQLRNLYQQLLASGRPLQIRTFHSWFAALL 140 Query: 145 QQFPL----EANITSHFA-IADEEQSKKLI----------EEAKKSTLASIMLDNNEELK 189 PL E + +H+ + D+ Q+K + ++A ++ +I+ + + Sbjct: 141 STAPLALLQERGLPTHYELLEDDAQAKAEVWRPFLEAVAGDDALRADYEAIVAVHG---R 197 Query: 190 KAFYEILEISNDEDIETLISD 210 ++ LE + D+ +E L+SD Sbjct: 198 SQTHKALEAALDKRVEFLLSD 218 >gi|329911425|ref|ZP_08275525.1| hypothetical protein IMCC9480_457 [Oxalobacteraceae bacterium IMCC9480] gi|327545902|gb|EGF31006.1| hypothetical protein IMCC9480_457 [Oxalobacteraceae bacterium IMCC9480] Length = 1090 Score = 79.3 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 54/191 (28%), Positives = 96/191 (50%), Gaps = 5/191 (2%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP S V A AGSGKT +LV R+LRLLLA PS +L +T T+ AA EM R+++++ Sbjct: 23 ACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGTAPSEMLAITFTRKAAQEMRDRLIQLL 82 Query: 87 TAWSHLSDEILSAEITK--IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + D+ + + + I + N + M AR L +L +P L + T H++ ++ Sbjct: 83 RELALAPDDTVRTLLLERGIAASELN-ALMPLARGLYEKVLASPQALSIDTFHSWFAKLI 141 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204 + PL + + +++ + L +A + + D E+++A + E+ D + Sbjct: 142 RLAPLASGVPHGYSLT--AATGALALDAYSRFMQVLNEDGQSEVRQALQHLYELVGDWNA 199 Query: 205 ETLISDIISNR 215 L+ + R Sbjct: 200 RKLLDAFVGKR 210 >gi|291613181|ref|YP_003523338.1| Exodeoxyribonuclease V [Sideroxydans lithotrophicus ES-1] gi|291583293|gb|ADE10951.1| Exodeoxyribonuclease V [Sideroxydans lithotrophicus ES-1] Length = 1134 Score = 78.6 bits (192), Expect = 8e-13, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 6/155 (3%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 LA DP S V A AGSGKT +LV R++RLLL A PS +L +T T+ AA EM R+ Sbjct: 5 LALDPKHSIVVEACAGSGKTWLLVSRIVRLLLDGAQPSQILAITFTRKAAQEMQARLQLW 64 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + + D + + + ++S + +AR L ++L G+ + T H + +MQ Sbjct: 65 LRDLAMADDAAVRKFFAERGLESLSESQLQRARSLYGSVLLAQPGITISTFHGWFMQVMQ 124 Query: 146 QFPLEANITSHFAIAD------EEQSKKLIEEAKK 174 + PL A++ ++ + EE ++L+E+ +K Sbjct: 125 RAPLNADVMLGMSLLERAGSEQEEAWEELLEQMRK 159 >gi|145589486|ref|YP_001156083.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047892|gb|ABP34519.1| DNA helicase/exodeoxyribonuclease V, subunit A [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 1185 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 3/165 (1%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 Q S+ + + + + LA DP +S VSA AGSGKT +LV R++RLLL + P +L Sbjct: 7 QAMSKVLSEVEKQAYSESLACDPHQSVIVSACAGSGKTWLLVARMVRLLLDDVKPQEILA 66 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILE 126 LT T+ AA EM R+ ++ +S + D+ L E I + +S + KA+ L +L Sbjct: 67 LTFTRKAAQEMRDRLYGLLEHFSKIDDDSLMQELIARGLNVDQARSYLLKAKALYEEVLA 126 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 P + + T H + ++ P+ I F + E +K+L E Sbjct: 127 NPQPIVIDTFHGWFGRLLGAAPVSLGIQPGFTL--REDAKRLQSE 169 >gi|74316051|ref|YP_313791.1| DNA helicase/exodeoxyribonuclease V subunit A [Thiobacillus denitrificans ATCC 25259] gi|74055546|gb|AAZ95986.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC 25259] Length = 1089 Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 5/155 (3%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 +A P RSA V A AGSGKT +LV R+LRLLLA A PS LL +T T+ AA EM+ R+ E Sbjct: 9 IALSPNRSAVVEACAGSGKTWLLVSRMLRLLLAGAAPSELLAITFTRKAAQEMTDRLHEW 68 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + L+D+ + + ++ D + +AR LL +L G V T H + + Sbjct: 69 LRVLA-LADDATVRAFLREREVPADEIDALLPRARGLLEAVLSAQPGPTVTTFHGWFLDL 127 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 +++ PLEA + + + E +L+ E ++ A Sbjct: 128 LKRAPLEAGLPWGAPLLERES--ELLNEVRERLFA 160 >gi|192360802|ref|YP_001982657.1| UvrD/REP helicase domain-containing protein [Cellvibrio japonicus Ueda107] gi|190686967|gb|ACE84645.1| UvrD/REP helicase domain protein [Cellvibrio japonicus Ueda107] Length = 1163 Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 60/196 (30%), Positives = 100/196 (51%), Gaps = 13/196 (6%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 +L A DP RS VSA AGSGKT +L QRVL+LL P +L +T T+ AA EM R+L Sbjct: 20 RLAAIDPERSFAVSAPAGSGKTGLLTQRVLQLLAHCEQPEEILAITFTRKAAGEMQDRIL 79 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + W DE + + + ++ + + +L +P L++ TI + C AI Sbjct: 80 HAL--W-QAQDEPEPNDPHARRTWRLAQAALKRDSEFGWQLLHSPQRLRITTIDSLCRAI 136 Query: 144 MQQFPLEANITSHFAIADE-EQSKKL-IEEAKKSTLASIMLDNNEELKKAFYEILE--IS 199 QQ PL + + + ++ EQ+ +L + E K LD L++ +L + Sbjct: 137 TQQLPLASGLGAQPDTLEQPEQAYRLAVRELFKQ------LDKESPLREHLARLLRHLDN 190 Query: 200 NDEDIETLISDIISNR 215 N + +E L++++++ R Sbjct: 191 NLQTVEDLLANLLAKR 206 >gi|77919306|ref|YP_357121.1| ATP-dependent exoDNAse (exonuclease V) subunit beta [Pelobacter carbinolicus DSM 2380] gi|77545389|gb|ABA88951.1| ATP-dependent exoDNase (exonuclease V) beta subunit [Pelobacter carbinolicus DSM 2380] Length = 1118 Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 6/151 (3%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP RS V A AGSGKT +L+QR+L LL P +L +T T+ AA EM R++ + Sbjct: 17 ALDPARSFIVQAPAGSGKTELLIQRILALLGGVQQPEEVLAITFTRKAAGEMRDRLVRAL 76 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 A + A T + ++D ARH +LE P L VQTI +FC +++++ Sbjct: 77 EAARQPEPQAEHARTTWRLARAVLEND---ARHDW-RLLENPVRLAVQTIDSFCASLVRR 132 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 P + + AI E +++L +A + L Sbjct: 133 MPWLSRFGAQAAIV--EDARELYRQAAERVL 161 >gi|119475989|ref|ZP_01616341.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2143] gi|119450616|gb|EAW31850.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2143] Length = 1153 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 13/147 (8%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 +++ A DP+ S V+A AGSGKT +L QRVLRLL P +L +T T+ AAAEM HR+ Sbjct: 9 QRVKALDPSCSVCVTAPAGSGKTELLSQRVLRLLATVGQPEEILAITFTRKAAAEMHHRI 68 Query: 83 LEIITAWS-----HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 ++ + S H S ++LS ++ + + + + ++LE G LK+QTI Sbjct: 69 IQALRDASTLDQPHQSHKLLSWQLA--------RQVLDRDQEHGWSLLENTGRLKIQTID 120 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQ 164 + + +Q P+ +N + I++ Q Sbjct: 121 SLSAHLTRQMPILSNFGAQPKISEYPQ 147 >gi|292492977|ref|YP_003528416.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4] gi|291581572|gb|ADE16029.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4] Length = 1159 Score = 76.6 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 11/192 (5%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE-I 85 A +P +S V A AGSGKT +L QR L LL P ++ +T T+ AAAEM +R++E + Sbjct: 15 ALNPHQSFIVQAPAGSGKTELLTQRYLVLLARVEAPEEIVAITFTRKAAAEMRYRIVEAL 74 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 I+A + + A T + + D K L P L++QTI + C ++ + Sbjct: 75 ISARENQPPQAEPARTTWELARAVGRRDADKGWEL----ERHPSRLRIQTIDSLCASLTR 130 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE--D 203 Q PL + + I E+S+ L +A ++TL + ++ E + +L N++ Sbjct: 131 QMPLLSRFGAQPGIT--EESENLYRQAARATLTEV--ESGAEWSASVEVLLRHLNNDWGK 186 Query: 204 IETLISDIISNR 215 IETL+S +++ R Sbjct: 187 IETLLSAMLARR 198 >gi|270157153|ref|ZP_06185810.1| putative ATP-dependent DNA helicase [Legionella longbeachae D-4968] gi|289164442|ref|YP_003454580.1| UvrD/REP helicase family protein [Legionella longbeachae NSW150] gi|269989178|gb|EEZ95432.1| putative ATP-dependent DNA helicase [Legionella longbeachae D-4968] gi|288857615|emb|CBJ11455.1| putative UvrD/REP helicase family protein [Legionella longbeachae NSW150] Length = 1084 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 98/202 (48%), Gaps = 11/202 (5%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L+ T+ Q A+DP+ S V A AGSGKT IL QR LRLL P ++ LT T+ AA Sbjct: 2 LVDSTQRSQ--ATDPSLSYIVQAPAGSGKTEILTQRYLRLLSTVKAPEQIVALTFTRKAA 59 Query: 76 AEMSHRV-LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 +EM R+ L + A +H ++T K SD H +L+ PG L+V Sbjct: 60 SEMRERILLALQQAANHQPANSPHQQMTLDFADKALHSDA----HYQWNLLQQPGRLRVI 115 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TI + C++I Q PL ++ I D+ S L + ++ +E K Sbjct: 116 TIDSLCQSINQAIPLLEKQIAYAQITDKTSSHYL-NAGRHCIQYAMATPQYQEAIKTL-- 172 Query: 195 ILEISNDED-IETLISDIISNR 215 +L + N +D + L S+++S R Sbjct: 173 LLHVDNRQDRLLDLFSELLSQR 194 >gi|126179444|ref|YP_001047409.1| UvrD/REP helicase [Methanoculleus marisnigri JR1] gi|125862238|gb|ABN57427.1| UvrD/REP helicase [Methanoculleus marisnigri JR1] Length = 1080 Score = 75.1 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 37/158 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T+ + A D + S V+A AG+GKTH+LVQ+ L LL + +L LT T+ AA EM Sbjct: 4 TERQARAALDHSTSKCVTAGAGTGKTHVLVQKYLSLLESGVGVGNILALTFTEKAAGEMK 63 Query: 80 HRVLEIITA-----WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 RV I W + DE L A KV Sbjct: 64 IRVRRAIAEKEGERWDAIRDEFLWA--------------------------------KVS 91 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 T H+FC +++++F + A + FA+ DE ++ +L EEA Sbjct: 92 TFHSFCASVLREFSIGAGVGPSFAVLDEGEAFRLREEA 129 >gi|326317369|ref|YP_004235041.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374205|gb|ADX46474.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1182 Score = 75.1 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 43/126 (34%), Positives = 69/126 (54%), Gaps = 2/126 (1%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 +A DP RS V A AG+GKT +LV R+LR LL P +L +T TK AA EM R+LE Sbjct: 25 IACDPARSVAVEACAGAGKTWMLVSRILRALLEGCEPHEILAITFTKKAAGEMRQRLLEW 84 Query: 86 ITAWSHLSDEILSAEITK--IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + A+S L E+ I ++ + ++ + L + +L ++++T H++ A+ Sbjct: 85 LEAFSRTPLPALRGELQARGIPAEQATEEACARLQGLFLQVLGAGRPVQIRTFHSWFAAL 144 Query: 144 MQQFPL 149 + PL Sbjct: 145 LGTAPL 150 >gi|121607642|ref|YP_995449.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2] gi|121552282|gb|ABM56431.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2] Length = 1140 Score = 75.1 bits (183), Expect = 8e-12, Method: Composition-based stats. Identities = 45/126 (35%), Positives = 74/126 (58%), Gaps = 3/126 (2%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 +A DP RS V A AG+GKT +LV R+LR LL P +L +T TK AA EM R+ E Sbjct: 29 IACDPARSVAVQACAGAGKTWMLVSRMLRALLDGCAPHEILAITFTKKAAGEMRQRLQEW 88 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKA--RHLLITILETPGGLKVQTIHAFCEAI 143 + ++ E LSAE+ +G +P ++ +A ++L +L++ ++++T H++ A+ Sbjct: 89 LEEFAQAPPERLSAELVA-RGMRPERALEQRAALQNLYRQLLDSGRPVQIRTFHSWFAAL 147 Query: 144 MQQFPL 149 + PL Sbjct: 148 LGMAPL 153 >gi|171463387|ref|YP_001797500.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192925|gb|ACB43886.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 1173 Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 79/154 (51%), Gaps = 4/154 (2%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 Q SE+ A DP RS VSA AGSGKT LV R++RLLL + P +L LT T+ AA EM Sbjct: 8 QVYSEKF-ACDPQRSVIVSACAGSGKTWSLVARMVRLLLDDVKPQEILALTFTRKAAQEM 66 Query: 79 SHRVLEIITAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 R+ ++ +S + D L E I + K + + KA+ L +L P + + T H Sbjct: 67 RDRLYGMLEQFSKIDDASLIKELIARGMEKAQAEKYLPKAKALYEQVLANPQPIVIDTFH 126 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 + ++ P+ I F + E +K+L E Sbjct: 127 GWFGRLLGAAPVSLGIQPGFKL--REDAKRLQAE 158 >gi|120611309|ref|YP_970987.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1] gi|120589773|gb|ABM33213.1| DNA helicase/exodeoxyribonuclease V, subunit A [Acidovorax citrulli AAC00-1] Length = 1168 Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 2/126 (1%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 +A DP RS V A AG+GKT +LV R+LR LL P +L +T TK AA EM R+LE Sbjct: 25 IACDPARSVAVEACAGAGKTWMLVSRILRALLEGCEPHEILAITFTKKAAGEMRQRLLEW 84 Query: 86 ITAWSHLSDEILSAEITK--IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + A+S L E+ I ++ ++ + L + +L ++++T H++ A+ Sbjct: 85 LEAFSRTPLPALRGELLARGIPAEQATDDACARLQGLFLQVLGAGRPVQIRTFHSWFAAL 144 Query: 144 MQQFPL 149 + PL Sbjct: 145 LGTAPL 150 >gi|160872666|ref|ZP_02062798.1| UvrD/REP helicase [Rickettsiella grylli] gi|159121465|gb|EDP46803.1| UvrD/REP helicase [Rickettsiella grylli] Length = 1135 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 106/233 (45%), Gaps = 32/233 (13%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 E+ A DP S V A AGSGKT +LV+R L LL +P ++ +T T+ AA EM R+ Sbjct: 13 ERQRALDPKTSFIVQAPAGSGKTELLVRRYLTLLARVPYPEAIIAITFTRKAANEMRLRI 72 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI------------TILETPGG 130 + +T +H IT +Q D K RH L +L P Sbjct: 73 MTALTV-AH------EKNITAVQ-------DKDKERHFLAQKALLQNKTFEWNLLSHPNR 118 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 L++ TI +FC+++ +Q PL+A ++ + D + L A L LD Sbjct: 119 LRILTIDSFCQSLTRQMPLQAGLSEQWTPTDNPEW--LYRLAIHEFLNP--LDEKVTWFS 174 Query: 191 AFYEIL-EISND-EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 A ++L + ND + +E L+ +++ R S RK +E+SLW + Sbjct: 175 ALNQLLIHLDNDFQRLENLLVPLLARREQWLDYLLLQSPDDLRKTLEQSLWDL 227 >gi|284124401|ref|ZP_06386963.1| DNA helicase, UvrD/REP type [Candidatus Poribacteria sp. WGA-A3] gi|283829217|gb|EFC33632.1| DNA helicase, UvrD/REP type [Candidatus Poribacteria sp. WGA-A3] Length = 1180 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 27/163 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R L +L + P ++ +T T+ AAAEM RV+E + +++D Sbjct: 19 VTAGAGSGKTTVLVERYLEILRKGDVGPQNIVAITFTEKAAAEMKERVIERLNEAGNITD 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +L+ + TIHAFC I+++FP A + Sbjct: 79 R--------------------------DNLLDQMSSAYISTIHAFCSRILREFPFLAKVP 112 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 ++F+I K L++E K TL +I + +E + +L+ Sbjct: 113 ANFSILQGIDQKLLLQETLKETLNNIATNAEDEHRPELTHLLQ 155 >gi|113868365|ref|YP_726854.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Ralstonia eutropha H16] gi|113527141|emb|CAJ93486.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Ralstonia eutropha H16] Length = 1200 Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 58/191 (30%), Positives = 99/191 (51%), Gaps = 3/191 (1%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP RS V A AGSGKT +LV R++RLLLA A P +L +T T+ AA EM R+LE++ Sbjct: 28 ACDPARSVVVEACAGSGKTWLLVARLVRLLLAGAAPHEILAITFTRKAAEEMRDRLLEVL 87 Query: 87 TAWSHLSDE-ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 S SDE +++A + + + + +AR L +L PG + + T H + +++ Sbjct: 88 AQMSRDSDEDVVAALVQRGLTHDAAREALPRARRLHAQVLAAPGRMAIDTFHGWFGTLLR 147 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 PL + I A+ E + ++ EA ++ + +L+ A+ +++ D Sbjct: 148 GAPLASGIVPGAAL--REDALRMKREAWAPVWRALATEQYTDLRAAWETLVDTVGDFQAR 205 Query: 206 TLISDIISNRT 216 L+ + R+ Sbjct: 206 ALLDAMFHARS 216 >gi|260220997|emb|CBA29121.1| hypothetical protein Csp_A10560 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 1131 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 45/126 (35%), Positives = 71/126 (56%), Gaps = 3/126 (2%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 +A DP RS V A AG+GKT +LV R++R LL A P +L +T TK AA EM R+ + Sbjct: 34 IACDPRRSVAVEACAGAGKTWMLVSRMVRALLDGAAPHEILAITFTKKAAGEMRERLYDW 93 Query: 86 ITAWSHLSDEILSAEIT--KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + +++ D L E+ +QG P ++K R L +L ++V+T H++ A+ Sbjct: 94 LRSYARADDSTLRRELQLRGVQG-DPGAEQLAKLRSLHEALLLAGRPVQVRTFHSWFAAL 152 Query: 144 MQQFPL 149 ++ PL Sbjct: 153 LRSAPL 158 >gi|300310196|ref|YP_003774288.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1] gi|300072981|gb|ADJ62380.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae SmR1] Length = 1158 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 61/211 (28%), Positives = 108/211 (51%), Gaps = 7/211 (3%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 +++ + E +D T++ A DP S V A AGSGKT +LV R+LRLLLA A L Sbjct: 10 AYEVNGEAVDAAVFTRA----ACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGAQAPEL 65 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITI 124 L +T T+ AA EM R+LE++ + + +A + + +P+ + AR L I Sbjct: 66 LAITFTRKAAQEMRERLLELLHELALADEAGAAALLRERGVAEPDLPRLLPLARGLYERI 125 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 L + L + T H++ ++Q PL + + + + E++ +L++EA + + ++ Sbjct: 126 LSSEQSLSIDTFHSWFARLLQIAPLASGVPYGYTLT--EKNGELLDEAYRRFMQTLREPE 183 Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNR 215 +K A E+ E++ D + L+ I R Sbjct: 184 GAHIKAALLELYELAGDFNARQLLDAFIDKR 214 >gi|117924280|ref|YP_864897.1| DNA helicase/exodeoxyribonuclease V, subunit A [Magnetococcus sp. MC-1] gi|117608036|gb|ABK43491.1| DNA helicase/exodeoxyribonuclease V, subunit A [Magnetococcus sp. MC-1] Length = 1155 Score = 73.2 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 63/220 (28%), Positives = 112/220 (50%), Gaps = 13/220 (5%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP S V A AGSGKT +L QR LRLL P +L +T T+ AAAEM R++E Sbjct: 12 ALDPEGSFIVQAPAGSGKTGLLTQRFLRLLAVVDKPEQILAITFTRKAAAEMRGRIVE-- 69 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 A + + ++ E + Q + + +++ +L P L V TI A + +Q Sbjct: 70 -ALAEAARGVVPVEPFERQRYELARGALAQDHAHGWQLLHNPQRLAVMTIDALSSRLTRQ 128 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK-KAFYEILEISNDED-- 203 P+ + F ADE + L ++A +S L + M + + + +A + +L+ D D Sbjct: 129 MPVLSGFGGSFERADEPEP--LYQQAARSCLETSMQEPADSPRHQAVWRLLQ-HRDYDFQ 185 Query: 204 -IETLISDIISNRTALKLIFFFFSYL-WRRKIIEKSLWSI 241 +E L+ ++++ R + I+ + +R+++E++LW + Sbjct: 186 RLEQLLVEMLARRD--QWIYHLQNQDGLQREVLEQALWHL 223 >gi|227878665|ref|ZP_03996580.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus crispatus JV-V01] gi|256843261|ref|ZP_05548749.1| recombination helicase AddA [Lactobacillus crispatus 125-2-CHN] gi|256850382|ref|ZP_05555810.1| ATP-dependent exonuclease subunit A [Lactobacillus crispatus MV-1A-US] gi|262046470|ref|ZP_06019432.1| recombination helicase AddA [Lactobacillus crispatus MV-3A-US] gi|312978152|ref|ZP_07789896.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus CTV-05] gi|227861729|gb|EEJ69333.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus crispatus JV-V01] gi|256614681|gb|EEU19882.1| recombination helicase AddA [Lactobacillus crispatus 125-2-CHN] gi|256712779|gb|EEU27772.1| ATP-dependent exonuclease subunit A [Lactobacillus crispatus MV-1A-US] gi|260573341|gb|EEX29899.1| recombination helicase AddA [Lactobacillus crispatus MV-3A-US] gi|310894870|gb|EFQ43940.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus CTV-05] Length = 1202 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 82/184 (44%), Gaps = 21/184 (11%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK +Q D VSA+AGSGKT +LV+RVLR +L+ LL +T TKAAA EM Sbjct: 5 TKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLREILSGTQVDELLVITFTKAAAEEMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + LSAE+ KP + R L L + TI AF Sbjct: 65 TRI-----------KQALSAELA-----KPGSN-----RRYLREQLNQVDTANISTIDAF 103 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C ++ +F N+ F+I ++ L++E + L+ + + FY+ Sbjct: 104 CLEVIHRFYYSVNLDPSFSILTDDTQAALLKERALREIEGEFLEKKDVNFRHFYDNFAGD 163 Query: 200 NDED 203 D D Sbjct: 164 RDAD 167 >gi|254497523|ref|ZP_05110315.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella drancourtii LLAP12] gi|254353240|gb|EET11983.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella drancourtii LLAP12] Length = 1084 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 73/150 (48%), Gaps = 19/150 (12%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A+DPT+S V A AGSGKT IL QR LRLL P ++ LT T+ AA+EM R II Sbjct: 11 ATDPTQSFIVQAPAGSGKTEILTQRYLRLLGRVTAPEQIIALTFTRKAASEMRER---II 67 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKS-DMSKARHLL-------ITILETPGGLKVQTIHA 138 A L + K P++ + AR L +L P LK+ TI A Sbjct: 68 MA--------LQQAANNVHAKSPHQQMTLDFAREALHRDAQYHWDLLHQPNRLKIVTIDA 119 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKL 168 C++I Q PL ++ I D+ +S L Sbjct: 120 LCQSINQAIPLLEKQIAYSQITDKAESHYL 149 >gi|42519128|ref|NP_965058.1| hypothetical protein LJ1203 [Lactobacillus johnsonii NCC 533] gi|81667805|sp|Q74JA6|ADDA_LACJO RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|41583415|gb|AAS09024.1| hypothetical protein LJ_1203 [Lactobacillus johnsonii NCC 533] Length = 1204 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 24/186 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK + +D + VSA+AGSGKT +LV+RVL+ +L+ S+LL +T TKAAA EM Sbjct: 5 TKEQNQAINDYGKDILVSASAGSGKTTVLVERVLKRILSGTPVSSLLIITFTKAAAREMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I SD+I K+PN L + L + TI +F Sbjct: 65 ERIKQKI------SDQI---------EKEPN-------NQFLRSQLLDVDTANISTIDSF 102 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C ++++F ++ F++ +E +L++E + L+ N++ + FY+ S Sbjct: 103 CLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALHEIEIEYLEKNDQDFQDFYD--NFS 160 Query: 200 NDEDIE 205 D D E Sbjct: 161 GDRDAE 166 >gi|293380925|ref|ZP_06626959.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus 214-1] gi|290922500|gb|EFD99468.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus 214-1] Length = 1202 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 82/184 (44%), Gaps = 21/184 (11%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK +Q D VSA+AGSGKT +LV+RVLR +L+ LL +T TKAAA EM Sbjct: 5 TKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLREILSGTQVDELLVITFTKAAAEEMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + LSAE+ KP + R L L + TI AF Sbjct: 65 TRI-----------KQALSAELA-----KPGSN-----RRYLREQLNQVDTANISTIDAF 103 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C ++ +F N+ F+I ++ L++E + L+ + + FY+ Sbjct: 104 CLEVIHRFYYSVNLDPSFSILTDDTQAALLKERALREIEGEFLEKKDVNFRHFYDNFAGD 163 Query: 200 NDED 203 D D Sbjct: 164 RDAD 167 >gi|295693034|ref|YP_003601644.1| ATP-dependent helicase/nuclease subunit a [Lactobacillus crispatus ST1] gi|295031140|emb|CBL50619.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus crispatus ST1] Length = 1202 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 82/184 (44%), Gaps = 21/184 (11%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK +Q D VSA+AGSGKT +LV+RVLR +L+ LL +T TKAAA EM Sbjct: 5 TKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLREILSGTQVDELLVITFTKAAAEEMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + LSAE+ KP + R L L + TI AF Sbjct: 65 TRI-----------KQALSAELA-----KPGSN-----RRYLREQLNQVDTANISTIDAF 103 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C ++ +F N+ F+I ++ L++E + L+ + + FY+ Sbjct: 104 CLEVIHRFYYSVNLDPSFSILTDDTQAALLKERALREIEGEFLEEKDVNFRHFYDNFAGD 163 Query: 200 NDED 203 D D Sbjct: 164 RDAD 167 >gi|300361736|ref|ZP_07057913.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri JV-V03] gi|300354355|gb|EFJ70226.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri JV-V03] Length = 1204 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 96/187 (51%), Gaps = 26/187 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK + +D + VSA+AGSGKT +LV+RVL+ +L+ S+LL +T TKAAA EM Sbjct: 5 TKEQDQAINDSGKDILVSASAGSGKTTVLVERVLKKILSGTPVSSLLIITFTKAAAREMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I SD++ E+ + D R+ L+ I + TI +F Sbjct: 65 ERIKQKI------SDQL---EV---------EPDNQFLRNQLLDI----DTANISTIDSF 102 Query: 140 CEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++++F ++ F++ DE Q + L E A + A + ++N++ + FY+ Sbjct: 103 CLDVIRRFYYVIDLDPQFSVLTDETQGELLKERALREIEADYLEEDNQDFQD-FYD--NF 159 Query: 199 SNDEDIE 205 S D D E Sbjct: 160 SGDRDAE 166 >gi|268319455|ref|YP_003293111.1| ATP-dependent nuclease subunit A [Lactobacillus johnsonii FI9785] gi|262397830|emb|CAX66844.1| ATP-dependent nuclease subunit A [Lactobacillus johnsonii FI9785] Length = 1204 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 24/186 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK + +D + VSA+AGSGKT +LV+RVL+ +L+ S+LL +T TKAAA EM Sbjct: 5 TKEQNQAINDYGKDILVSASAGSGKTTVLVERVLKRVLSGTPVSSLLIITFTKAAAREMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I SD+I K+PN L + L + TI +F Sbjct: 65 ERIKQKI------SDQI---------EKEPN-------NQFLRSQLLDVDTANISTIDSF 102 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C ++++F ++ F++ +E +L++E + L+ N++ + FY+ S Sbjct: 103 CLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALHEIEIEYLEKNDQDFQDFYD--NFS 160 Query: 200 NDEDIE 205 D D E Sbjct: 161 GDRDAE 166 >gi|298530047|ref|ZP_07017449.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1] gi|298509421|gb|EFI33325.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1] Length = 1142 Score = 72.4 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 7/155 (4%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP RS V A AGSGKT +L QR L LL P ++ +T T+ AA EM R+L+ Sbjct: 14 ALDPKRSFIVQAPAGSGKTELLTQRTLALLCTVQAPEEVVAITFTRKAAGEMRTRILQ-- 71 Query: 87 TAWSHLSD-EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 A S +D E A K + + ++R L + +PG L++QTI + C ++ Sbjct: 72 -ALSRAADGETPGAPHEKTTLDLAARV-LERSRSLGWELESSPGRLRIQTIDSLCSGLVS 129 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 + PL +++ I D L +A +STLA + Sbjct: 130 RMPLLSSLGGQGRINDNPGEMYL--QAARSTLAQL 162 >gi|331005026|ref|ZP_08328431.1| ATP-dependent DNA helicase pcrA [gamma proteobacterium IMCC1989] gi|330421154|gb|EGG95415.1| ATP-dependent DNA helicase pcrA [gamma proteobacterium IMCC1989] Length = 1260 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 95/211 (45%), Gaps = 20/211 (9%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 + E+ A D + S VSA AGSGKT +L QRVL LL P +L +T TK AAAEM Sbjct: 15 QPERTRALDTSTSFAVSAPAGSGKTGLLTQRVLALLAQCEEPENVLAITFTKKAAAEMQA 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI-------TILETPGGLKV 133 R+L+ A H E + K+ AR +L + P L++ Sbjct: 75 RILD---ALRHAEQHTTEPEEDYL------KTTWRLARAVLARNTEKEWQLFSCPNRLRI 125 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TI + C +I QQ P E+ + I D + A + TLA + N+ + + Y Sbjct: 126 TTIDSLCRSISQQMPFESKLGHTPEILDN--PNLAYQMAARETLAQLNTQNDLQ-EHLIY 182 Query: 194 EILEISNDED-IETLISDIISNRTALKLIFF 223 + + N D IETL+ ++ R + F Sbjct: 183 LVKHVDNKLDTIETLLIQLLGKRDQWLPVLF 213 >gi|325956899|ref|YP_004292311.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus acidophilus 30SC] gi|325333464|gb|ADZ07372.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus acidophilus 30SC] gi|327183678|gb|AEA32125.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus amylovorus GRL 1118] Length = 1206 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 23/185 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK ++ +D VSA+AGSGKT +LV+RVLR +LA S LL +T TKAAA EM Sbjct: 5 TKEQEKAINDRGHDILVSASAGSGKTTVLVERVLREILAGTQVSELLVVTFTKAAAEEMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ +T + KP + R L L + TI AF Sbjct: 65 TRIKNALTQ----------------EMAKPGVN-----RRYLREQLNQVDTANISTIDAF 103 Query: 140 CEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++ +F ++ F I DE Q+ L E A + + + + + ++ FY+ Sbjct: 104 CLEVIHRFYYSVDLDPSFQILTDETQAALLKERALREVEGEFLTNKDSDFRR-FYDNFAG 162 Query: 199 SNDED 203 D D Sbjct: 163 DRDAD 167 >gi|315038484|ref|YP_004032052.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus amylovorus GRL 1112] gi|312276617|gb|ADQ59257.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus amylovorus GRL 1112] Length = 1205 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 23/185 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK ++ +D VSA+AGSGKT +LV+RVLR +LA S LL +T TKAAA EM Sbjct: 5 TKEQEKAINDRGHDILVSASAGSGKTTVLVERVLREILAGTQVSELLVVTFTKAAAEEMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ +T + KP + R L L + TI AF Sbjct: 65 TRIKNALTQ----------------EMAKPGVN-----RRYLREQLNQVDTANISTIDAF 103 Query: 140 CEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++ +F ++ F I DE Q+ L E A + + + + + ++ FY+ Sbjct: 104 CLEVIHRFYYSVDLDPSFQILTDETQAALLKERALREVEGEFLTNKDSDFRR-FYDNFAG 162 Query: 199 SNDED 203 D D Sbjct: 163 DRDAD 167 >gi|315924912|ref|ZP_07921129.1| ATP-dependent deoxyribonuclease subunit A [Pseudoramibacter alactolyticus ATCC 23263] gi|315621811|gb|EFV01775.1| ATP-dependent deoxyribonuclease subunit A [Pseudoramibacter alactolyticus ATCC 23263] Length = 1178 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 24/181 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA AGSGKT +L++R+ RL++ +LL LT T+AAA EM R+ + LS+ Sbjct: 20 VSAAAGSGKTALLIERIRRLVVDEDVDVDSLLVLTFTRAAAGEMRERLS------TALSE 73 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +++ +D K R L L G ++TIHAFC ++++F E + Sbjct: 74 ALMAC------------TDADKRRRL-SNQLRRLSGASIETIHAFCGDLVREFFQEVDAD 120 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDIETLISD 210 + I D+ + +L +EA + L+ E+ + AF ++++ DED+ TL+ D Sbjct: 121 PNDRIGDDVELDRLQDEAMTAVFEERYLEIPEDGETAFSKLVDAYGDSKGDEDLRTLVLD 180 Query: 211 I 211 + Sbjct: 181 L 181 >gi|258406095|ref|YP_003198837.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692] gi|257798322|gb|ACV69259.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692] Length = 1132 Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 55/191 (28%), Positives = 93/191 (48%), Gaps = 10/191 (5%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP S V A AG+GKT +L QR L LL + P +L +T T+ AA EM +R II Sbjct: 14 ALDPYTSFIVQAPAGAGKTELLTQRYLVLLAGVSAPEEVLAITFTRKAATEMRNR---II 70 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 A D + + + ++ + + L + + P LK+QTI + C + +Q Sbjct: 71 AALQRAGDPTPPDKPHEALTWRLARAVREQDQLLGWELEQAPSRLKIQTIDSLCAQLTRQ 130 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE--ISNDEDI 204 P+ ++ + I D+ +++ EA ++TLA + +NE + +L N + Sbjct: 131 MPVLSSFGAAPGIRDD--AREFYREAARNTLAEL---DNETWSEPLATLLAHLDGNTDQF 185 Query: 205 ETLISDIISNR 215 E L+ D++ R Sbjct: 186 EALLVDMLGRR 196 >gi|121535716|ref|ZP_01667519.1| UvrD-like DNA helicase, C terminal [Thermosinus carboxydivorans Nor1] gi|121305681|gb|EAX46620.1| UvrD-like DNA helicase, C terminal [Thermosinus carboxydivorans Nor1] Length = 1246 Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 34/197 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LVQR++ +L P LL +T T AAAAEM R+ + +TA Sbjct: 21 VAAAAGSGKTSVLVQRIIDRILDKTAPVNVDALLVVTFTNAAAAEMRERIAQALTA---- 76 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 E+ E T+ R LL+ + TIH+FC+++++Q+ + Sbjct: 77 --ELAKGERTRYL-----------ERQLLLL-----NQASISTIHSFCQSVVRQYFYRLD 118 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212 + F IA E ++ L + TL +++ + E+ +AF +++ DE ++ ++ +I Sbjct: 119 LDPQFRIAGEGETTLL----RSDTLEALLAERYEQGDEAFLTLVDHYGDERDDSSLAGLI 174 Query: 213 SNRTALKLIFFFFSYLW 229 L+L F S W Sbjct: 175 -----LRLYEFARSQPW 186 >gi|282852209|ref|ZP_06261561.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri 224-1] gi|282556628|gb|EFB62238.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri 224-1] Length = 828 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 26/187 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK + +D + VSA+AGSGKT +LV+RVL+ +L+ S+LL +T TKAAA EM Sbjct: 5 TKEQDQAINDAGKDILVSASAGSGKTTVLVERVLKKILSGTPVSSLLIITFTKAAAREMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I SD++ EI + D R L+ + + TI +F Sbjct: 65 ERIKQKI------SDQL---EI---------EPDNQFLRSQLLDV----DTANISTIDSF 102 Query: 140 CEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++++F ++ F++ DE Q++ L E A + A + +N++ + FY+ Sbjct: 103 CLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALREIEADYLEGDNQDFQD-FYD--NF 159 Query: 199 SNDEDIE 205 S D D E Sbjct: 160 SGDRDAE 166 >gi|116749176|ref|YP_845863.1| UvrD/REP helicase [Syntrophobacter fumaroxidans MPOB] gi|116698240|gb|ABK17428.1| DNA helicase/exodeoxyribonuclease V, subunit A [Syntrophobacter fumaroxidans MPOB] Length = 1162 Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 55/160 (34%), Positives = 75/160 (46%), Gaps = 6/160 (3%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 DP+ S + A AGSGKT +L R LRLL HP +L +T T AA+EM RV + Sbjct: 22 DPSGSFHLEAPAGSGKTFLLTARFLRLLGLVEHPQQILAMTFTNKAASEMRERVCRYLQR 81 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG-LKVQTIHAFCEAIMQQF 147 E AE G+ + + + ARH L G L++QT H+FC A+ Q Sbjct: 82 AKR--GERPEAE---PDGELLDAAAKALARHQAHEPLLMGGELLRIQTFHSFCHALAAQA 136 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 PLEA I + E + + E TL + L E+ Sbjct: 137 PLEAGIAPGSTLMAEPEQTFFLREVIDDTLREVALRRPED 176 >gi|330427295|gb|AEC18629.1| putative nuclease/helicase [Pusillimonas sp. T7-7] Length = 1119 Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 86/159 (54%), Gaps = 8/159 (5%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A +PTRS + A AGSGKT +L R+L LL P ++ +T T+ AA+EM RVL + Sbjct: 15 AINPTRSFLIQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAASEMHARVLAKL 74 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 A E E K++G + ++ + + + L +L+ P + ++TI +FC +++ Sbjct: 75 KAGQGPQPE----EPYKLRGWQLARAVLQRDQQLGWDLLDYPARMSIRTIDSFCTWLVRA 130 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 P +++ +I D +++ E A ++TL+ M D N Sbjct: 131 MPWLSSLGGVPSITD--NAREHYEAAAQATLS--MADEN 165 >gi|116629672|ref|YP_814844.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus gasseri ATCC 33323] gi|238854242|ref|ZP_04644586.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri 202-4] gi|122273390|sp|Q043G6|ADDA_LACGA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116095254|gb|ABJ60406.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus gasseri ATCC 33323] gi|238833053|gb|EEQ25346.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri 202-4] Length = 1204 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 26/187 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK + +D + VSA+AGSGKT +LV+RVL+ +L+ S+LL +T TKAAA EM Sbjct: 5 TKEQDQAINDAGKDILVSASAGSGKTTVLVERVLKKILSGTPVSSLLIITFTKAAAREMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I SD++ EI + D R L+ + + TI +F Sbjct: 65 ERIKQKI------SDQL---EI---------EPDNQFLRSQLLDV----DTANISTIDSF 102 Query: 140 CEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++++F ++ F++ DE Q++ L E A + A + +N++ + FY+ Sbjct: 103 CLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALREIEADYLEGDNQDFQD-FYD--NF 159 Query: 199 SNDEDIE 205 S D D E Sbjct: 160 SGDRDAE 166 >gi|311110685|ref|ZP_07712082.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri MV-22] gi|311065839|gb|EFQ46179.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri MV-22] Length = 1204 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 26/187 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK + +D + VSA+AGSGKT +LV+RVL+ +L+ S+LL +T TKAAA EM Sbjct: 5 TKEQDQAINDAGKDILVSASAGSGKTTVLVERVLKKILSGTPVSSLLIITFTKAAAREMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I SD++ EI + D R L+ + + TI +F Sbjct: 65 ERIKQKI------SDQL---EI---------EPDNQFLRSQLLDV----DTANISTIDSF 102 Query: 140 CEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++++F ++ F++ DE Q++ L E A + A + +N++ + FY+ Sbjct: 103 CLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALREIEADYLEGDNQDFQD-FYD--NF 159 Query: 199 SNDEDIE 205 S D D E Sbjct: 160 SGDRDAE 166 >gi|295424857|ref|ZP_06817572.1| ATP-dependent nuclease subunit A [Lactobacillus amylolyticus DSM 11664] gi|295065423|gb|EFG56316.1| ATP-dependent nuclease subunit A [Lactobacillus amylolyticus DSM 11664] Length = 1199 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 86/187 (45%), Gaps = 25/187 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK +Q D + VSA+AGSGKT +LVQRVL +L+ LL +T TKAAA EM Sbjct: 4 TKEQQQAIDDRGKDILVSASAGSGKTTVLVQRVLDEILSGTDVDQLLIVTFTKAAAEEMK 63 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ +T + S+ + ++ NK D + + TI AF Sbjct: 64 ERIKNALTQ------ALQSSNQKRYLRRQLNKIDTA----------------NISTIDAF 101 Query: 140 CEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++ +F N+ F+I DE Q+ L E A K +S + + + FY Sbjct: 102 CLEVIHRFYYVINLDPSFSILTDETQAALLRERALKDIESSFLTAEDNQDFIDFYN--NF 159 Query: 199 SNDEDIE 205 + D D+E Sbjct: 160 AGDRDVE 166 >gi|194290034|ref|YP_002005941.1| helicase, uvrd subfamily [Cupriavidus taiwanensis LMG 19424] gi|193223869|emb|CAQ69878.1| Putative helicase, uvrD subfamily [Cupriavidus taiwanensis LMG 19424] Length = 1213 Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 3/191 (1%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP RS V A AGSGKT +LV R++RLLLA A P +L +T T+ AA EM R+LE++ Sbjct: 28 ACDPARSVVVEACAGSGKTWLLVARLVRLLLAGAAPHEILAITFTRKAAEEMRDRLLEVL 87 Query: 87 TAWSHLS-DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + S D++++A + + + + +AR L +L PG + + T H + +++ Sbjct: 88 AQLARDSDDDVIAALVQRGLCADAAREALPRARRLHAQVLAAPGRMAIDTFHGWFGTLLR 147 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 PL + I A+ E + ++ EA ++ EL+ A+ +++ D Sbjct: 148 GAPLASGIVPGAAL--REDALRMKREAWAPVWRALATPPYAELRAAWETLVDTVGDFQAR 205 Query: 206 TLISDIISNRT 216 L+ + R+ Sbjct: 206 ALLDAMFHARS 216 >gi|227904086|ref|ZP_04021891.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus ATCC 4796] gi|227868105|gb|EEJ75526.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus ATCC 4796] Length = 1207 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 84/176 (47%), Gaps = 23/176 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK +Q D VSA+AGSGKT +LV+RVL+ +++ S LL +T TKAAA EM Sbjct: 5 TKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLKEIISGTQVSELLVVTFTKAAAEEMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R I TA L+ E+ KP + R L L + TI AF Sbjct: 65 TR---IKTA--------LTKELA-----KPGVN-----RKYLREQLNQVDTANISTIDAF 103 Query: 140 CEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 C ++++F N+ F I DE Q+ + E A + A + D N + + FY+ Sbjct: 104 CLEVIRRFYYSVNLNPSFKILTDETQAALIKERALREIEAESLTDENSGI-RYFYD 158 >gi|58337450|ref|YP_194035.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus NCFM] gi|75357583|sp|Q5FJX0|ADDA_LACAC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|58254767|gb|AAV43004.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus NCFM] Length = 1207 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 84/176 (47%), Gaps = 23/176 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK +Q D VSA+AGSGKT +LV+RVL+ +++ S LL +T TKAAA EM Sbjct: 5 TKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLKEIISGTQVSELLVVTFTKAAAEEMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R I TA L+ E+ KP + R L L + TI AF Sbjct: 65 TR---IKTA--------LTKELA-----KPGVN-----RKYLREQLNQVDTANISTIDAF 103 Query: 140 CEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 C ++++F N+ F I DE Q+ + E A + A + D N + + FY+ Sbjct: 104 CLEVIRRFYYSVNLNPSFKILTDETQAALIKERALREIEAESLTDENSGI-RYFYD 158 >gi|291542614|emb|CBL15724.1| recombination helicase AddA, Firmicutes type [Ruminococcus bromii L2-63] Length = 1186 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 29/169 (17%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAW 89 S VSA AGSGKT +LV+RV++L+ +P LL +T T+AAAAEM R+ Sbjct: 19 SVLVSAAAGSGKTAVLVERVIKLITREKNPLDVDRLLIVTFTRAAAAEMRERI------- 71 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 A + K+ P + + R LL + + TI +FC I++++ Sbjct: 72 --------QAAVNKLLEDDPYNAHLLAQRQLLYSA-------NISTIDSFCGDIVREYFH 116 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 ++ F IADE + + L +EA +T S D+ ++ FY +L++ Sbjct: 117 TLDVARDFRIADEGELEILRQEALDNTFES-FYDSEDD---CFYSLLDL 161 >gi|256821959|ref|YP_003145922.1| UvrD/REP helicase [Kangiella koreensis DSM 16069] gi|256795498|gb|ACV26154.1| UvrD/REP helicase [Kangiella koreensis DSM 16069] Length = 1138 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 28/165 (16%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A D TRS V A AGSGKT +L QRVL+LL +P ++ +T T AA EM +R+++ Sbjct: 11 AIDHTRSFIVQAPAGSGKTELLTQRVLKLLAVVQNPEEVVAITFTNKAAREMQNRIMQ-- 68 Query: 87 TAWSHLSDEILSAEITKIQGKKPN-----------KSDMSKARHLLITILETPGGLKVQT 135 + QG KP+ KS + + + L ++ +P L+++T Sbjct: 69 -------------SLYSAQGPKPDQPHKVLTWELAKSVLQRDQELDWGLMHSPHRLRIKT 115 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 + C I Q P+ A ++ E +L +A KS + + Sbjct: 116 FDSLCATIANQMPVLAKFGGQ--LSPTENPYELYYQAAKSVVDGV 158 >gi|241768156|ref|ZP_04765619.1| UvrD/REP helicase [Acidovorax delafieldii 2AN] gi|241360465|gb|EER57577.1| UvrD/REP helicase [Acidovorax delafieldii 2AN] Length = 208 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/126 (36%), Positives = 74/126 (58%), Gaps = 3/126 (2%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 +A DP RS V A AG+GKT +LV R+LR LL A P +L +T TK AA EM R+ E Sbjct: 22 IACDPQRSVAVEACAGAGKTWMLVSRMLRALLDGAAPHEILAITFTKKAAGEMRQRLQEW 81 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNK-SDMSKA-RHLLITILETPGGLKVQTIHAFCEAI 143 + ++H + L+ E+ +G P + SD +A ++L +L + ++++T H++ A+ Sbjct: 82 LEVFAHAPLDDLARELIA-RGISPERSSDKREALQNLYRKMLASGRPVQIRTFHSWFAAL 140 Query: 144 MQQFPL 149 + PL Sbjct: 141 LGTAPL 146 >gi|54294699|ref|YP_127114.1| hypothetical protein lpl1776 [Legionella pneumophila str. Lens] gi|53754531|emb|CAH16015.1| hypothetical protein lpl1776 [Legionella pneumophila str. Lens] Length = 1076 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 7/125 (5%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A+DP S V A AGSGKT IL QR LRLL P ++ LT T+ AA+EM R+++ + Sbjct: 12 ATDPAESFIVQAPAGSGKTEILTQRFLRLLSTVQSPEQIIALTFTRKAASEMRERIVQAL 71 Query: 87 TAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 H++ A ++ Q N K + + + +LE P LK+ TI + C++I Sbjct: 72 ----HMAASNQPA-VSAHQQSTLNFAKQALQRNKQYQWDLLEQPNRLKIITIDSLCQSIN 126 Query: 145 QQFPL 149 + PL Sbjct: 127 RAIPL 131 >gi|299535964|ref|ZP_07049283.1| ATP-dependent nuclease subunit A [Lysinibacillus fusiformis ZC1] gi|298728569|gb|EFI69125.1| ATP-dependent nuclease subunit A [Lysinibacillus fusiformis ZC1] Length = 1239 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 29/183 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 VSA AGSGKT +L+ R++ ++A +P LL +T T A+AAEM HR Sbjct: 31 VSAAAGSGKTAVLINRMIEKVIATENPINVDELLVVTFTNASAAEMRHR----------- 79 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 +S + K + P + + + L+ ++ T+H+FC AI++QF + Sbjct: 80 ----MSEALEKAIAENPTSNHLRRQLSLV-------NKAQISTLHSFCLAIVKQFAYLLD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDIETLI 208 I F IA+E + L ++ L +E+ +A Y +++ +D+ IETLI Sbjct: 129 IDPGFRIANEAEIALLRDDVLAEVLEDAYDSEDEDHVQAIYRLVDSFTSDRDDQAIETLI 188 Query: 209 SDI 211 S + Sbjct: 189 SKL 191 >gi|54297724|ref|YP_124093.1| hypothetical protein lpp1775 [Legionella pneumophila str. Paris] gi|53751509|emb|CAH12927.1| hypothetical protein lpp1775 [Legionella pneumophila str. Paris] Length = 1076 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 7/125 (5%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A+DP S V A AGSGKT IL QR LRLL P ++ LT T+ AA+EM R+++ + Sbjct: 12 ATDPAESFIVQAPAGSGKTEILTQRFLRLLSTVQSPEQIIALTFTRKAASEMRERIVQAL 71 Query: 87 TAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 H++ A ++ Q N K + + + +LE P LK+ TI + C++I Sbjct: 72 ----HMAASNQPA-VSAHQQSTLNFAKQALQRNKQYQWDLLEQPNRLKIITIDSLCQSIN 126 Query: 145 QQFPL 149 + PL Sbjct: 127 RAIPL 131 >gi|88703287|ref|ZP_01101003.1| UvrD/REP helicase family protein [Congregibacter litoralis KT71] gi|88702001|gb|EAQ99104.1| UvrD/REP helicase family protein [Congregibacter litoralis KT71] Length = 1107 Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats. Identities = 64/200 (32%), Positives = 98/200 (49%), Gaps = 20/200 (10%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 +L A DP S VSA AGSGKT +LVQR L LL + P +++ +T T+ AAAEM RV+ Sbjct: 9 RLRAVDPGLSVCVSAPAGSGKTALLVQRFLGLLARVSEPESVVAITFTRKAAAEMRARVV 68 Query: 84 EIIT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + A + E + + D S+ L L+ P L++QTI +FC Sbjct: 69 GALQGAAEGVKARNPHEEALMAAARAVAEHDGSRGWGL----LDNPSRLRIQTIDSFCGY 124 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 + +Q P+ + D+ S+ L EA ++ L + N + KA Sbjct: 125 LTRQMPVLSGCGGQVTATDD--SRVLYREAIENFLHGEL--NRRQDDKA----------R 170 Query: 203 DIETLISDIISN-RTALKLI 221 DIETL+ + +N +AL+L+ Sbjct: 171 DIETLLLHLDNNWDSALELL 190 >gi|154148488|ref|YP_001406940.1| ATP-dependent DNA helicase UvrD [Campylobacter hominis ATCC BAA-381] gi|153804497|gb|ABS51504.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter hominis ATCC BAA-381] Length = 923 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 14/138 (10%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 ++ R + A+AGSGKTH L +R + L+L A P+ +L +T TK AA+EM R++E Sbjct: 5 NENNRYEALQASAGSGKTHALTKRFVELMLDGALPNQILAITFTKKAASEMKSRIVE--- 61 Query: 88 AWSHLSDEILSAEITKIQGKKP----NKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 A+ L + + ++ G+ N+ D K + L LK+ T AF +I Sbjct: 62 AFLDLENSKILHDVMNDFGESKEQILNRRDKLKEKFL-------NQNLKIYTFDAFFSSI 114 Query: 144 MQQFPLEANITSHFAIAD 161 ++ F L ++S+F++ D Sbjct: 115 LRAFALNLGLSSNFSVDD 132 >gi|227890027|ref|ZP_04007832.1| possible ATP-dependent deoxyribonuclease, subunit A [Lactobacillus johnsonii ATCC 33200] gi|227849471|gb|EEJ59557.1| possible ATP-dependent deoxyribonuclease, subunit A [Lactobacillus johnsonii ATCC 33200] Length = 1204 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 24/186 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK + +D + VSA+AGSGKT +LV+RVL+ +L+ S+LL +T TKAAA EM Sbjct: 5 TKEQNQAINDYGKDILVSASAGSGKTTVLVERVLKRILSGTPVSSLLIITFTKAAAREMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I SD+I +S+ R L+ + + TI +F Sbjct: 65 ERIKQKI------SDQI------------EKESNNQFLRSQLLDV----DTANISTIDSF 102 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C ++++F ++ F++ +E +L++E + L+ N++ + FY+ S Sbjct: 103 CLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALHEIEIEYLEKNDQDFQDFYD--NFS 160 Query: 200 NDEDIE 205 D D E Sbjct: 161 GDRDAE 166 >gi|33592640|ref|NP_880284.1| putative nuclease/helicase [Bordetella pertussis Tohama I] gi|33572286|emb|CAE41838.1| putative nuclease/helicase [Bordetella pertussis Tohama I] Length = 1134 Score = 68.6 bits (166), Expect = 7e-10, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 24/160 (15%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP+RS V A AGSGKT +L R+L LL P ++ +T T+ AA+EM RVL + Sbjct: 17 ALDPSRSFLVQAPAGSGKTELLTDRILALLATVTRPEEIVAITFTRKAASEMHARVLHKL 76 Query: 87 ---------TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 +A S E+ A + + D + HL L+ P L ++TI Sbjct: 77 SLGAGEPPRSAHERRSWELARAALAR---------DQEQGWHL----LDHPARLAIRTID 123 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 +FC +++ P + + IAD+ ++ E A ++TL Sbjct: 124 SFCAGLVRGMPWLSELGGMPDIADDARAH--YEAAARATL 161 >gi|52842039|ref|YP_095838.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148359358|ref|YP_001250565.1| ATP-dependent DNA helicase [Legionella pneumophila str. Corby] gi|296107405|ref|YP_003619105.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella pneumophila 2300/99 Alcoy] gi|52629150|gb|AAU27891.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148281131|gb|ABQ55219.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella pneumophila str. Corby] gi|295649306|gb|ADG25153.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella pneumophila 2300/99 Alcoy] gi|307610513|emb|CBX00098.1| hypothetical protein LPW_18431 [Legionella pneumophila 130b] Length = 1076 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 7/125 (5%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A+DP S V A AGSGKT IL QR LRLL P ++ LT T+ AA+EM R+++ + Sbjct: 12 ATDPAESFIVQAPAGSGKTEILTQRFLRLLSTVQSPEQIIALTFTRKAASEMRERIVQAL 71 Query: 87 TAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 H++ A ++ Q N K + + +LE P LK+ TI + C++I Sbjct: 72 ----HMAASNQPA-VSAHQQSTLNFAKQALQRNNQYQWDLLEQPNRLKIITIDSLCQSIN 126 Query: 145 QQFPL 149 + PL Sbjct: 127 RAIPL 131 >gi|33595892|ref|NP_883535.1| putative nuclease/helicase [Bordetella parapertussis 12822] gi|33565971|emb|CAE36522.1| putative nuclease/helicase [Bordetella parapertussis] Length = 1134 Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 24/160 (15%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP+RS V A AGSGKT +L R+L LL P ++ +T T+ AA+EM RVL + Sbjct: 17 ALDPSRSFLVQAPAGSGKTELLTDRILALLATVTRPEEIVAITFTRKAASEMHARVLHKL 76 Query: 87 ---------TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 +A S E+ A + + D + HL L+ P L ++TI Sbjct: 77 SLGAGEPPRSAHERRSWELARAALAR---------DQEQGWHL----LDHPARLAIRTID 123 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 +FC +++ P + + IAD+ ++ E A ++TL Sbjct: 124 SFCAGLVRGMPWLSELGGMPDIADDARAH--YEAAARATL 161 >gi|33600423|ref|NP_887983.1| putative nuclease/helicase [Bordetella bronchiseptica RB50] gi|33568022|emb|CAE31935.1| putative nuclease/helicase [Bordetella bronchiseptica RB50] Length = 1134 Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 24/160 (15%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP+RS V A AGSGKT +L R+L LL P ++ +T T+ AA+EM RVL + Sbjct: 17 ALDPSRSFLVQAPAGSGKTELLTDRILALLATVTRPEEIVAITFTRKAASEMHARVLHKL 76 Query: 87 ---------TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 +A S E+ A + + D + HL L+ P L ++TI Sbjct: 77 SLGAGEPPRSAHERRSWELARAALAR---------DQEQGWHL----LDHPARLAIRTID 123 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 +FC +++ P + + IAD+ ++ E A ++TL Sbjct: 124 SFCAGLVRGMPWLSELGGMPDIADDARAH--YEAAARATL 161 >gi|82701856|ref|YP_411422.1| UvrD/REP helicase [Nitrosospira multiformis ATCC 25196] gi|82409921|gb|ABB74030.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrosospira multiformis ATCC 25196] Length = 1196 Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 59/204 (28%), Positives = 103/204 (50%), Gaps = 15/204 (7%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 ++E+ A DP S V A AGSGKT +L+QR L+LL P ++ +T T+ AAAEM Sbjct: 18 EAERRQALDPACSFIVQAPAGSGKTGLLIQRYLKLLACVEEPEEVVAITFTRKAAAEMRQ 77 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL-------ITILETPGGLKV 133 R++ + + + + E Q K K+ + A +L + + P L++ Sbjct: 78 RLVAALASAQKAAHSSGAQEAE--QESKHEKTTRTLAHAVLRRDAEACWRLADHPARLRI 135 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 QT + C ++ +Q P+ + D+ + L EA ++TLA +LD ++ + + Sbjct: 136 QTFDSLCASLTRQMPVLSGFGGQPETVDD--ASDLYLEAARATLA--LLDGDDAVAEDVE 191 Query: 194 EILE-ISND-EDIETLISDIISNR 215 +LE + ND IE L+ +I++ R Sbjct: 192 CLLEHLDNDIGRIEKLLVEILALR 215 >gi|300114627|ref|YP_003761202.1| UvrD/REP helicase [Nitrosococcus watsonii C-113] gi|299540564|gb|ADJ28881.1| UvrD/REP helicase [Nitrosococcus watsonii C-113] Length = 1147 Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats. Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 33/203 (16%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A +P S V A AGSGKT +L QR L LL P ++ +T T+ AAAEM +R++E + Sbjct: 15 ALNPHGSFIVQAPAGSGKTELLTQRYLMLLARVEAPEEIVAITFTRKAAAEMRYRIIEAL 74 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI------------TILETPGGLKVQ 134 + ++ +P K++ +K L ++ + P L++Q Sbjct: 75 AS---------------VKESQPPKAEPAKTTWELACAVRRRDEGMGWSLEDHPARLRIQ 119 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TI + C ++ +Q PL + + I ++ +S L +A + TLA + ++ E + Sbjct: 120 TIDSLCASLTRQMPLLSRFGAQPGITEDAES--LYRQAARRTLAEV--ESGAEWSASVET 175 Query: 195 ILEISNDE--DIETLISDIISNR 215 +L N+ IE L+S +++ R Sbjct: 176 LLRHLNNNWGKIERLLSAMLARR 198 >gi|332039917|gb|EGI76310.1| uvrd/rep helicase [Hylemonella gracilis ATCC 19624] Length = 1133 Score = 68.2 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 8/131 (6%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-----AHPSTLLCLTHTKAAAAEMSH 80 +A DP R V A AG+GKT +LV R+LR LL A +L +T TK AA EM Sbjct: 22 IACDPRRHVAVEACAGAGKTWMLVSRILRALLGEQGDDGAQAHEILAITFTKKAAGEMRQ 81 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHA 138 R+ E ++A++ D+ L AE+ + +G + + D ++ R L + +L+ ++++T H+ Sbjct: 82 RLTEWLSAFACYDDDQLRAEL-RARGVEQARVDVLIAPLRGLHLRLLQQGRAVQIRTFHS 140 Query: 139 FCEAIMQQFPL 149 + A+++ PL Sbjct: 141 WFAALLRNAPL 151 >gi|325982040|ref|YP_004294442.1| UvrD/REP helicase [Nitrosomonas sp. AL212] gi|325531559|gb|ADZ26280.1| UvrD/REP helicase [Nitrosomonas sp. AL212] Length = 1158 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 97/204 (47%), Gaps = 35/204 (17%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP++S V A AGSGKT +L+QR L+LL P ++ +T T+ AAAEM RVL Sbjct: 16 ALDPSQSFIVQAPAGSGKTTLLIQRYLKLLTCVDTPEEVVAITFTRKAAAEMRTRVLA-- 73 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL-----------ETPGGLKVQT 135 EI +I G+ + R L + +L E P L++QT Sbjct: 74 -----------ELEIARIPGEAETAYEKLN-RELAVAVLLRDQQAGWYLSEHPERLRIQT 121 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADE--EQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 I + C ++ +Q P+ S F E E + EA + TL ++ + + Sbjct: 122 IDSLCASLTRQMPM----LSKFGAQPETTEDATDFYLEAVRVTLE--LMQQDHAIAHDIE 175 Query: 194 EILE-ISND-EDIETLISDIISNR 215 ++LE + ND +ETL+ ++++ R Sbjct: 176 QLLEHLDNDMARVETLLIEMLAQR 199 >gi|218533282|ref|YP_002424097.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4] gi|218525585|gb|ACK86169.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4] Length = 1117 Score = 68.2 bits (165), Expect = 9e-10, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 78/147 (53%), Gaps = 9/147 (6%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 RS V A AGSGKT ++ RV +L + P ++ +T T+ AA+E+ RV E+ Sbjct: 23 RSLLVEAGAGSGKTALMAGRVAMMLASGTAPGSIAAVTFTELAASELLERVGEV------ 76 Query: 92 LSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + ++ ++ +++ PN +S+ R LL+ E + TIH FC+ +++ +P+E Sbjct: 77 -TGRLIEGQVPEEMRIALPNGLSVSQ-RQLLVEAAEHLDEMACTTIHGFCQRLVKPYPVE 134 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTL 177 A+I + DE ++ + ++ + L Sbjct: 135 ADIDPGARVVDEAEADGIFQDLRDGWL 161 >gi|225375922|ref|ZP_03753143.1| hypothetical protein ROSEINA2194_01558 [Roseburia inulinivorans DSM 16841] gi|225212243|gb|EEG94597.1| hypothetical protein ROSEINA2194_01558 [Roseburia inulinivorans DSM 16841] Length = 1182 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 38/221 (17%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 +S T +Q + R+ VSA AGSGKT +LV+R+++++ HP LL +T T A Sbjct: 3 VSWTTEQQQVIDLRNRNILVSAAAGSGKTAVLVERIVKIITDKNHPVDIDHLLIVTFTNA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL--ITILETPGGL 131 AAAEM R+ I K ++P HLL +T++ Sbjct: 63 AAAEMRERI---------------GNAIEKALDEQPGNE------HLLRQLTLIHNA--- 98 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 ++ TI +FC +++ E ++ +F I DE + K L ++ L ++ N EE +A Sbjct: 99 QITTIDSFCLYVVRNHFHEIDLEPNFRIGDEGELKLL----REDVLGRVLEQNYEEPSEA 154 Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRK 232 F + + E + +D N L+L F SY W K Sbjct: 155 FSDFV-----EGYASGRTDAALNEMILQLYEFSRSYPWPEK 190 >gi|121605093|ref|YP_982422.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2] gi|120594062|gb|ABM37501.1| DNA helicase/exodeoxyribonuclease V, subunit A [Polaromonas naphthalenivorans CJ2] Length = 1103 Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 21/144 (14%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLL--ANA------------HPSTLLCLTHT 71 +A DP RS + A AG+GKT +LV R++R LL ANA P +L +T T Sbjct: 20 IACDPRRSVAIEACAGAGKTWMLVSRIVRALLDGANAPDPASGTPREPVRPHEILAITFT 79 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA------RHLLITIL 125 K AA EM R+ E + ++H DE L E+ ++G KS S A +L ++L Sbjct: 80 KKAAGEMRERLDEWLQKFTHADDETLRQELI-MRGVSSQKSLQSNADMRRQLSNLYRSML 138 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPL 149 + ++++T H++ A+++ P+ Sbjct: 139 ASGRAVQIRTFHSWFAALLRSAPV 162 >gi|240139167|ref|YP_002963642.1| UvrD/REP helicase [Methylobacterium extorquens AM1] gi|240009139|gb|ACS40365.1| UvrD/REP helicase [Methylobacterium extorquens AM1] Length = 1124 Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 11/148 (7%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 RS V A AGSGKT ++ R+ +L A P ++ +T T+ AA+E+ RV E++ Sbjct: 23 RSLLVEAGAGSGKTALMAGRIAMMLAAGVAPGSIAAVTFTELAASELLERVGEVV---GR 79 Query: 92 LSDEILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 L + + E+ + G P++ R L+ E L TIH FC+ +++ +P+ Sbjct: 80 LVEGQVPEELRVVLPNGLSPDQ------RARLVEAGEHLDALACTTIHGFCQRLVKPYPV 133 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTL 177 EA+I +ADE ++ + ++ + L Sbjct: 134 EADIDPGARVADEAEADGIFQDLRDGWL 161 >gi|157691776|ref|YP_001486238.1| ATP-dependent deoxyribonuclease subunit A [Bacillus pumilus SAFR-032] gi|251764506|sp|A8FBR1|ADDA_BACP2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|157680534|gb|ABV61678.1| ATP-dependent deoxyribonuclease subunit A [Bacillus pumilus SAFR-032] Length = 1234 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 29/165 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++R + HP LL +T T A+AAEM HR+ E Sbjct: 28 VAAAAGSGKTAVLVERLIRKMTRPEHPVDVDRLLVVTFTNASAAEMKHRITEA------- 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + K K P M + L+ + T+H+FC +++ F E + Sbjct: 81 --------LEKELAKNPGSLHMRRQLSLM-------NRANISTLHSFCLQVLRTFYYEID 125 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 + F +AD+ + + L +E L + D + K +F+E+++ Sbjct: 126 LDPGFRLADQTEGELLGDE----VLDELFEDEYKAGKPSFFELVD 166 >gi|194014992|ref|ZP_03053609.1| recombination helicase AddA [Bacillus pumilus ATCC 7061] gi|194014018|gb|EDW23583.1| recombination helicase AddA [Bacillus pumilus ATCC 7061] Length = 1232 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 29/165 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++R + HP LL +T T A+AAEM HR+ E Sbjct: 28 VAAAAGSGKTAVLVERLIRKMTRPEHPVDVDRLLVVTFTNASAAEMKHRITEA------- 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + K K P M + L+ + T+H+FC +++ F E + Sbjct: 81 --------LEKELAKNPGSLHMRRQLSLM-------NRANISTLHSFCLQVLRTFYYEID 125 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 + F +AD+ + + L +E L + D + K +F+E+++ Sbjct: 126 LDPGFRLADQTEGELLGDE----VLDELFEDEYKAGKPSFFELVD 166 >gi|73541802|ref|YP_296322.1| DNA helicase/exodeoxyribonuclease V, subunit A [Ralstonia eutropha JMP134] gi|72119215|gb|AAZ61478.1| DNA helicase/exodeoxyribonuclease V, subunit A [Ralstonia eutropha JMP134] Length = 1197 Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 54/191 (28%), Positives = 97/191 (50%), Gaps = 3/191 (1%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP S V A AGSGKT +LV R++RLLLA A P +L +T T+ AA EM R+LE++ Sbjct: 22 ACDPASSVVVEACAGSGKTWLLVARLVRLLLAGAAPHEILAITFTRKAAEEMRERLLEVL 81 Query: 87 TAWSHLSDE-ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + SDE ++ A + + + + +AR L +L PG + + T H + +++ Sbjct: 82 AQLARDSDEAVVEALVMRGMTAQAAHESLPRARRLHAQVLAAPGRMAIDTFHGWFGTLLR 141 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 PL + + ++ E + ++ EA ++ EL++A+ +++ + Sbjct: 142 GAPLASGVVPGASL--REDALRMKREAWAPVWRALATPKYAELRQAYEALVDAVGEFQAR 199 Query: 206 TLISDIISNRT 216 L+ + R+ Sbjct: 200 GLLDAMFHARS 210 >gi|125974531|ref|YP_001038441.1| DNA helicase/exodeoxyribonuclease V, subunit A [Clostridium thermocellum ATCC 27405] gi|251764521|sp|A3DH19|ADDA_CLOTH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|125714756|gb|ABN53248.1| DNA helicase/exodeoxyribonuclease V, subunit A [Clostridium thermocellum ATCC 27405] Length = 1251 Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 34/208 (16%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 +S VSA AG+GKT +LV+R++R + +P LL +T T AAA EM R+ + I+ Sbjct: 20 KSLLVSAAAGAGKTAVLVERIIRKITDEENPVDIDRLLVVTFTNAAATEMRERIAQAISE 79 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 K++ + P +++ + LL G + TIH+FC +++ Sbjct: 80 --------------KLE-ENPGSANIQRQLTLL-------GKACITTIHSFCLEVIRSNF 117 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208 + NI F IADE +S+ + EA + NE+ F+E+LE + + Sbjct: 118 QQINIDPGFRIADETESRLMKLEALDEVFEEQYENENED----FFELLECYGGNRDDRAL 173 Query: 209 SDIISNRTALKLIFFFFSYLWRRKIIEK 236 D++ L L F S W + +EK Sbjct: 174 QDMV-----LNLYDFIQSSPWPEEWLEK 196 >gi|256005816|ref|ZP_05430767.1| recombination helicase AddA [Clostridium thermocellum DSM 2360] gi|255990217|gb|EEU00348.1| recombination helicase AddA [Clostridium thermocellum DSM 2360] gi|316941647|gb|ADU75681.1| recombination helicase AddA [Clostridium thermocellum DSM 1313] Length = 1251 Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 34/208 (16%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 +S VSA AG+GKT +LV+R++R + +P LL +T T AAA EM R+ + I+ Sbjct: 20 KSLLVSAAAGAGKTAVLVERIIRKITDEENPVDIDRLLVVTFTNAAATEMRERIAQAISE 79 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 K++ + P +++ + LL G + TIH+FC +++ Sbjct: 80 --------------KLE-ENPGSANIQRQLTLL-------GKACITTIHSFCLEVIRSNF 117 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208 + NI F IADE +S+ + EA + NE+ F+E+LE + + Sbjct: 118 QQINIDPGFRIADETESRLMKLEALDEVFEEQYENENED----FFELLECYGGNRDDRAL 173 Query: 209 SDIISNRTALKLIFFFFSYLWRRKIIEK 236 D++ L L F S W + +EK Sbjct: 174 QDMV-----LNLYDFIQSSPWPEEWLEK 196 >gi|281419055|ref|ZP_06250072.1| recombination helicase AddA [Clostridium thermocellum JW20] gi|281407204|gb|EFB37465.1| recombination helicase AddA [Clostridium thermocellum JW20] Length = 1251 Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 34/208 (16%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 +S VSA AG+GKT +LV+R++R + +P LL +T T AAA EM R+ + I+ Sbjct: 20 KSLLVSAAAGAGKTAVLVERIIRKITDEENPVDIDRLLVVTFTNAAATEMRERIAQAISE 79 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 K++ + P +++ + LL G + TIH+FC +++ Sbjct: 80 --------------KLE-ENPGSANIQRQLTLL-------GKACITTIHSFCLEVIRSNF 117 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208 + NI F IADE +S+ + EA + NE+ F+E+LE + + Sbjct: 118 QQINIDPGFRIADETESRLMKLEALDEVFEEQYENENED----FFELLECYGGNRDDRAL 173 Query: 209 SDIISNRTALKLIFFFFSYLWRRKIIEK 236 D++ L L F S W + +EK Sbjct: 174 QDMV-----LNLYDFIQSSPWPEEWLEK 196 >gi|169826779|ref|YP_001696937.1| ATP-dependent nuclease subunit A [Lysinibacillus sphaericus C3-41] gi|251764534|sp|B1HN90|ADDA_LYSSC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|168991267|gb|ACA38807.1| ATP-dependent nuclease subunit A [Lysinibacillus sphaericus C3-41] Length = 1238 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 29/181 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 VSA AGSGKT +L+ R++ ++A +P LL +T T A+AAEM HR Sbjct: 31 VSAAAGSGKTAVLINRMIEKVIATDNPINVDELLVVTFTNASAAEMRHR----------- 79 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 +S + K + P S + + L+ ++ T+H+FC AI++Q+ + Sbjct: 80 ----MSEALEKAIVENPTSSHLRRQLSLI-------NKAQISTLHSFCLAIVKQYAYLLD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDIETLI 208 I F IA+E + L ++ L E +A Y +++ +D+ IETLI Sbjct: 129 IDPGFRIANEAEVALLRDDIVADVLEGAYDSEEETQVQAIYRLVDSFTSDRDDQAIETLI 188 Query: 209 S 209 S Sbjct: 189 S 189 >gi|88608144|ref|YP_506352.1| ATP-dependent DNA helicase UvrD [Neorickettsia sennetsu str. Miyayama] gi|88600313|gb|ABD45781.1| ATP-dependent DNA helicase, UvrD/REP family [Neorickettsia sennetsu str. Miyayama] Length = 907 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 15/118 (12%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 +DP S W++++AG GKT +LV+R + LL+ +LC+T TK A AEM +R+ I+ Sbjct: 5 VTDPNVSVWINSSAGCGKTTLLVRRAISLLVNKE--KNILCITFTKVATAEMHNRIFAIL 62 Query: 87 TAWSHLS----DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 S ++ DE L + I + D R L+ T +++QT+H+FC Sbjct: 63 GKLSAMNDTDMDEYLLSTINR------TVKDRDYVRKLVYT---ADAFIQIQTLHSFC 111 >gi|307721871|ref|YP_003893011.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294] gi|306979964|gb|ADN09999.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294] Length = 904 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 14/163 (8%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A+AGSGKT +LV R L LL A PS +L LT T AA+EMS R++E + L Sbjct: 10 ASAGSGKTFMLVVRYLSLLFKGAEPSKVLALTFTNKAASEMSERIIETL---EDLDSRTE 66 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157 +EI K G + +++ +L L K+ TI +F I+++F L A++ F Sbjct: 67 LSEIAKECGMDEDDI-LAQRSKILAEFLNAHT--KIMTIDSFFTQILRKFSLYASLMPDF 123 Query: 158 AIADEEQSKKLIEE--------AKKSTLASIMLDNNEELKKAF 192 A+ + KL+ K+STL ++ L++++ + F Sbjct: 124 TTANAQHEVKLMSRFLKEVSVANKRSTLINLSLESSKRVSDIF 166 >gi|311108181|ref|YP_003981034.1| UvrD/Rep helicase family protein 2 [Achromobacter xylosoxidans A8] gi|310762870|gb|ADP18319.1| UvrD/Rep helicase family protein 2 [Achromobacter xylosoxidans A8] Length = 1147 Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 6/151 (3%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DPTRS V A AGSGKT +L R+L LL P ++ +T T+ AA+EM RVL + Sbjct: 17 ALDPTRSFLVQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAASEMHARVLSKL 76 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 E + + + + ++ HL L+ P L ++TI +FC +++ Sbjct: 77 RRGLDAPPEAMHERRSWELARAALARNEAQGWHL----LDHPARLAIRTIDSFCAGLVRS 132 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 P + + I D+ ++ E A ++TL Sbjct: 133 MPWLSELGGMPEITDDARAH--YEAAARATL 161 >gi|227892521|ref|ZP_04010326.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus ultunensis DSM 16047] gi|227865642|gb|EEJ73063.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus ultunensis DSM 16047] Length = 1207 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 81/185 (43%), Gaps = 23/185 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK ++ +D VSA+AGSGKT +LV+RVLR +LA + LL +T TKAAA EM Sbjct: 5 TKEQEKAINDRGHDILVSASAGSGKTTVLVERVLREILAGTQVNELLVVTFTKAAAEEMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ +T + KP + R L L + TI AF Sbjct: 65 TRIKNALTK----------------ELAKPGAN-----RRYLREQLNQIDTANISTIDAF 103 Query: 140 CEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++ +F ++ F I DE Q+ L E A + + + +K FY+ Sbjct: 104 CLEVIHRFYYSVDLDPSFQILTDETQAALLKERALREIEGERLTAKDSSFRK-FYDNFAG 162 Query: 199 SNDED 203 D D Sbjct: 163 DRDAD 167 >gi|225872585|ref|YP_002754040.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium capsulatum ATCC 51196] gi|225792506|gb|ACO32596.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium capsulatum ATCC 51196] Length = 1201 Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 14/212 (6%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLC 67 SE L ++E+ A + TRS V A AGSGKT +L +R L LLA H P +L Sbjct: 19 SEMRPLHPVDQAERESAIEVTRSVLVQAPAGSGKTDLLTRRFLA-LLAEGHVEGPEQILA 77 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T+AA AEM R+L+ + + ++ E K+ + ++ +LE Sbjct: 78 ITFTRAATAEMRARILKDLRDVASTDEQPGENERRKLARRALARARERGW-----PLLEQ 132 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 P L+V+TI + C I PL A + + D+ + L EA + T+ + D N+E Sbjct: 133 PALLQVETIDSLCMRIAHGQPLLARLGGQLSPVDD--ASALYLEAARRTIRHLGGD-NQE 189 Query: 188 LKKAFYEILEISNDE--DIETLISDIISNRTA 217 L A +L + + D E L++D++ R Sbjct: 190 LSAAIQHLLSLRDTHLGDCEQLMADMLRQRNG 221 >gi|293607025|ref|ZP_06689369.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292814622|gb|EFF73759.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 1149 Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 6/161 (3%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + Q + + A DPTRS V A AGSGKT +L R+L LL P ++ +T T+ AA+ Sbjct: 7 LPQDHAARTDALDPTRSFLVQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAAS 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RVL + E + + + + + HL L+ P L ++TI Sbjct: 67 EMHARVLSKLRRGLDAPPEAMHERRSWELARAALARNDEQGWHL----LDHPARLAIRTI 122 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 +FC +++ P + + I D+ ++ E A ++TL Sbjct: 123 DSFCAGLVRSMPWLSELGGMPEITDDARAH--YEAAARATL 161 >gi|225570785|ref|ZP_03779808.1| hypothetical protein CLOHYLEM_06888 [Clostridium hylemonae DSM 15053] gi|225160247|gb|EEG72866.1| hypothetical protein CLOHYLEM_06888 [Clostridium hylemonae DSM 15053] Length = 1204 Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats. Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 33/199 (16%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 ++ T+ +Q + R+ VSA AGSGKT +LV+R++ +L P +LL +T T+A Sbjct: 3 VAWTEEQQKVIDLRKRNILVSAAAGSGKTAVLVERIIAMLTDAEDPVSVESLLIVTFTEA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ + I KI N+ ++A T++ + ++ Sbjct: 63 AAAEMKERIRDAIE--------------KKISEDGENEHLKTQA-----TLIHSA---QI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+FC ++++ +I F +A+E + K + K L ++ DN EE +AF Sbjct: 101 TTIHSFCLSVIRDHFHAIDIDPGFRVAEEGELKLM----KHDVLGQVLEDNYEEGGEAFQ 156 Query: 194 EILEI----SNDEDIETLI 208 E +E +D IE L+ Sbjct: 157 EFVEAYGSGRDDRKIEELV 175 >gi|297538865|ref|YP_003674634.1| Exodeoxyribonuclease V [Methylotenera sp. 301] gi|297258212|gb|ADI30057.1| Exodeoxyribonuclease V [Methylotenera sp. 301] Length = 1158 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 20/167 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AG+GKT +L QR L+LL P ++ LT T AAAEM +R+L + + ++ Sbjct: 33 VEAPAGAGKTELLTQRYLKLLATVNEPEEIIALTFTNKAAAEMRNRIL---LSLENAQNQ 89 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + A K++ ++ + + ++ I+ P L++ TI A C ++ +Q PL + Sbjct: 90 TVEAAAHKLKTRELANAALLQSNVKSWDIINQPSRLRILTIDALCSSLTRQMPLLSKFGG 149 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIM---------------LDNNEE 187 A++D+ S + EA + +A I+ LDNN E Sbjct: 150 QPAVSDDTDSHYI--EASRRAIAHIVHETKPDDTVIVALSYLDNNSE 194 >gi|126652433|ref|ZP_01724605.1| ATP-dependent nuclease, subunit A [Bacillus sp. B14905] gi|126590704|gb|EAZ84819.1| ATP-dependent nuclease, subunit A [Bacillus sp. B14905] Length = 1238 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 90/182 (49%), Gaps = 31/182 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 VSA AGSGKT +L+ R++ ++A +P LL +T T A+AAEM HR Sbjct: 31 VSAAAGSGKTAVLINRMIEKVIATDNPINVDELLVVTFTNASAAEMRHR----------- 79 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 +S + K + P + + + L+ ++ T+H+FC AI++Q+ + Sbjct: 80 ----MSEALEKAIVENPTSNHLRRQLSLI-------NKAQISTLHSFCLAIVKQYAYMLD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK-KAFYEILEI----SNDEDIETL 207 I F IA+E + L ++ L D+ EE + +A Y +++ +D+ IETL Sbjct: 129 IDPGFRIANEAEVALLRDDIVADVLEG-AYDSEEETQIQAIYRLVDSFTSDRDDQAIETL 187 Query: 208 IS 209 IS Sbjct: 188 IS 189 >gi|77164502|ref|YP_343027.1| UvrD/REP helicase [Nitrosococcus oceani ATCC 19707] gi|254433459|ref|ZP_05046967.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27] gi|76882816|gb|ABA57497.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrosococcus oceani ATCC 19707] gi|207089792|gb|EDZ67063.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27] Length = 1146 Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats. Identities = 55/192 (28%), Positives = 95/192 (49%), Gaps = 11/192 (5%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL-EI 85 A +P S V A AGSGKT +L QR L LL P ++ +T T+ AAAEM +R++ + Sbjct: 15 ALNPHGSFIVQAPAGSGKTELLTQRYLMLLARVEAPEEIVAITFTRKAAAEMRYRIIAAL 74 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 +A + + A+ T + D K ++ + P L++QTI + C ++ + Sbjct: 75 ASAKENQPPKTEPAKTTWDLACAVRRRDEGKG----WSLEDHPARLRIQTIDSLCASLTR 130 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE--D 203 Q PL + + I E +++L +A TLA + ++ E + +L N+ Sbjct: 131 QMPLLSRFGAQPGIT--EDAERLYRQAAHRTLAEV--ESGAEWSASVETLLRHLNNNWGK 186 Query: 204 IETLISDIISNR 215 IE L+S +++ R Sbjct: 187 IERLLSAMLARR 198 >gi|226325452|ref|ZP_03800970.1| hypothetical protein COPCOM_03257 [Coprococcus comes ATCC 27758] gi|225206195|gb|EEG88549.1| hypothetical protein COPCOM_03257 [Coprococcus comes ATCC 27758] Length = 1214 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 25/196 (12%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + T+ +Q + + VSA AGSGKT +LV+R++ L +A+P +L +T+T+A Sbjct: 3 VKWTEEQQQVIDLRDHNILVSAAAGSGKTAVLVERIIARLTRDANPVDVDHMLIVTYTEA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ A I K + P+ + + L+ T K+ Sbjct: 63 AAAEMKERI---------------GAAIEKELEEDPSSEHLKRQSALIHTA-------KI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+FC ++++++ ++ F IA+E + K L ++ K L + + NE+ + Sbjct: 101 TTIHSFCLSVIREYFHTIDLDPGFRIAEEGELKLLKQDVMKELLEAKYEEGNEDFLRFVE 160 Query: 194 EILEISNDEDIETLIS 209 D +E +IS Sbjct: 161 TFATGREDLQVEEIIS 176 >gi|187477416|ref|YP_785440.1| nuclease/helicase [Bordetella avium 197N] gi|115422002|emb|CAJ48524.1| putative nuclease/helicase [Bordetella avium 197N] Length = 1107 Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 26/158 (16%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 Q +++L A DP S V A AGSGKT +L R+L LL P ++ +T T+ AA+EM Sbjct: 7 QDHAQRLRALDPQTSFLVQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAASEM 66 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT-----------ILET 127 RVLE ++ + QG +P + ++ L +L+ Sbjct: 67 HARVLE---------------KLARAQGPEPEAAHERRSWRLARAALARDAERGWHVLQH 111 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 P L ++TI +FC +++ P + + IAD+ ++ Sbjct: 112 PARLAIRTIDSFCSGLVRGMPWLSGLGGMPDIADDARA 149 >gi|254785006|ref|YP_003072434.1| UvrD/REP DNA helicase II [Teredinibacter turnerae T7901] gi|237686397|gb|ACR13661.1| UvrD/REP DNA helicase II [Teredinibacter turnerae T7901] Length = 1138 Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 6/169 (3%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +I +E+ A +P +S A AGSGKT +L QR L LL P +L +T T+ A Sbjct: 1 MIIADSTERRTALEPDQSFICEAPAGSGKTELLTQRYLVLLARVRRPEEILAITFTRKAT 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RVL + HL E + + ++ ++ + +L+ P L+++T Sbjct: 61 GEMRERVLHAL----HLGRGPEPEEAHRQLTWQLARAVLAADQQHQWQLLDNPNRLQIKT 116 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 + C ++ +Q P+E++ S I D+ S +L A + L ++ D+ Sbjct: 117 FDSLCSSLTRQLPMESSFGSQPQITDD--SAELYRSAVHALLGTLEEDS 163 >gi|302879642|ref|YP_003848206.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2] gi|302582431|gb|ADL56442.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2] Length = 1099 Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 3/190 (1%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A +P RS V A AGSGKT +LV RV+RLLL P +L +T T+ AA EM R+ + + Sbjct: 6 ALNPNRSVVVEACAGSGKTWLLVSRVVRLLLDGVAPGEILAITFTRKAAQEMQARLRDWL 65 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + D+ + + + +G + + +AR L L + + T H + I+Q+ Sbjct: 66 YELAAKDDDFVRDFLVQ-RGVDDVELALPRARLLYQQFLLARPSVTISTFHGWFMQILQR 124 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 P+ A S + E++ +L +EA + L + E ++ + + + ++ Sbjct: 125 APVSAG--SAGGVQLVEKTAQLWQEAWQMFLDELQSAPESETAQSMMVLFKELGLSNTQS 182 Query: 207 LISDIISNRT 216 L+ + ++ R+ Sbjct: 183 LLGNFVNKRS 192 >gi|254281652|ref|ZP_04956620.1| UvrD/REP helicase [gamma proteobacterium NOR51-B] gi|219677855|gb|EED34204.1| UvrD/REP helicase [gamma proteobacterium NOR51-B] Length = 1113 Score = 65.9 bits (159), Expect = 5e-09, Method: Composition-based stats. Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 30/172 (17%) Query: 22 SEQLL---ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 S+QL+ A DP RS V+A AGSGKT +L QR + L+ A +L LT T+ AAAEM Sbjct: 2 SDQLIREQAIDPDRSVCVTAPAGSGKTALLTQRFMALMPRVAKLEQILALTFTRKAAAEM 61 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK-ARHLLITILE---------TP 128 R+L +E+ + +P D + +R L T L+ Sbjct: 62 RARIL---------------SELDAARDNRPVNDDFERQSRQLASTALDHATSMGWSLQA 106 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 G ++TI +FC + + P+ + AD+ ++ L EEA ++ S+ Sbjct: 107 DGFNIRTIDSFCAYLTRHMPILSESGGLMQTADD--ARPLYEEAVRALFQSV 156 >gi|30250100|ref|NP_842170.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718] gi|30139207|emb|CAD86077.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718] Length = 1155 Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 23/225 (10%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 + E+ A DP S V A AGSGKT +L QR L LL P ++ +T T+ AA+EM H Sbjct: 12 QRERQQALDPWHSFIVQAPAGSGKTGLLTQRFLVLLATVEEPEEIVAITFTRKAASEMKH 71 Query: 81 RVLEII--TAWSHLSD----EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 R+L+ + TA SD L + + Q ++ ++ + +L+ P L++Q Sbjct: 72 RILQALRDTAGDINSDAESETALLNDAYQRQLRELANRVLAHDQARGWQLLQNPSRLRIQ 131 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TI + C ++ + P+ + + ++A E + +L EA + T+ + L+ E A Sbjct: 132 TIDSLCAWLVDRMPVCSRQGALSSVA--EDADRLYLEAARLTVEA--LEEEGEWTAAIEH 187 Query: 195 IL-EISNDED-IETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 ++ + N D ++ LI+D+++ R LW R +++ + Sbjct: 188 LIGHLDNRLDRLQQLIADMLARRD-----------LWLRGVVDAA 221 >gi|152981098|ref|YP_001352315.1| hypothetical protein mma_0625 [Janthinobacterium sp. Marseille] gi|151281175|gb|ABR89585.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 1083 Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 54/190 (28%), Positives = 100/190 (52%), Gaps = 3/190 (1%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP+RS V A AGSGKT +LV RVLRLLLA P+ +L +T T+ AA EM R+++++ Sbjct: 22 ACDPSRSVVVEACAGSGKTWLLVARVLRLLLAGTEPAAILAITFTRKAAQEMRERLMQLL 81 Query: 87 TAWSHLSD-EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + D E+L+ + ++ + +AR L +L +P L + T H++ ++Q Sbjct: 82 HELTLKPDAEVLALLRERGIAEQALAETLPQARGLYEQVLRSPQALSIDTFHSWFARLIQ 141 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 PL + + +++ E + +L+ +A + + + + +K A ++ D Sbjct: 142 IAPLASGVPHGYSLT--EATGELLSDAYSRFMQQVNEKDQQHVKDALVDLYTQVGDFSTR 199 Query: 206 TLISDIISNR 215 L++ ++ R Sbjct: 200 NLLNSFVAKR 209 >gi|169831437|ref|YP_001717419.1| UvrD-like DNA helicase, C terminal [Candidatus Desulforudis audaxviator MP104C] gi|251764572|sp|B1I493|ADDA_DESAP RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|169638281|gb|ACA59787.1| UvrD-like DNA helicase, C terminal [Candidatus Desulforudis audaxviator MP104C] Length = 1230 Score = 65.5 bits (158), Expect = 6e-09, Method: Composition-based stats. Identities = 60/188 (31%), Positives = 87/188 (46%), Gaps = 39/188 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+RV+R + A P LL +T T AAAAEM RV Sbjct: 23 VAAGAGSGKTAVLVERVIRRISDPAAPVDVDRLLVVTFTNAAAAEMRKRVA--------- 73 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 E L E+ K G M H L + + + TIH+FC +++++ + Sbjct: 74 --EALERELEKHPG-------MPLLEHQLRLLPQA----DITTIHSFCAELLRRYHYLID 120 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212 + F +ADE ++ L +E TL EE + Y + I+ D D+E L+ Sbjct: 121 LDPEFRVADETEAAILRQE----TL--------EEFFEEQYRV--ITGDPDLEFLVEAYG 166 Query: 213 SNRTALKL 220 R LKL Sbjct: 167 GERDDLKL 174 >gi|260101292|ref|ZP_05751529.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260084877|gb|EEW68997.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 1204 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 21/184 (11%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK ++ +D VSA+AGSGKT +LV+RVL+ +LA LL +T TKAAA EM Sbjct: 5 TKEQEKAINDRGHDILVSASAGSGKTTVLVERVLKEILAGTQVDELLVVTFTKAAAEEMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ A +TK + KP D R L I + TI AF Sbjct: 65 TRI---------------KAALTK-EMAKPG-VDYRYLREQLNQI----DTANISTIDAF 103 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C ++ +F + F I ++ L++E + ML + ++ + FY+ Sbjct: 104 CLDVIHRFYYSIELDPSFTILTDDTQAALLKERALREIEGEMLTSKDKAFRHFYDNFAGD 163 Query: 200 NDED 203 D D Sbjct: 164 RDAD 167 >gi|323466409|gb|ADX70096.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus helveticus H10] Length = 1204 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 21/184 (11%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK ++ +D VSA+AGSGKT +LV+RVL+ +LA LL +T TKAAA EM Sbjct: 5 TKEQEKAINDRGHDILVSASAGSGKTTVLVERVLKEILAGTQVDELLVVTFTKAAAEEMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ A +TK + KP D R L I + TI AF Sbjct: 65 TRI---------------KAALTK-EMAKPG-VDYRYLREQLNQI----DTANISTIDAF 103 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C ++ +F + F I ++ L++E + ML + ++ + FY+ Sbjct: 104 CLDVIHRFYYSIELDPSFTILTDDTQAALLKERALREIEGEMLTSKDKAFRHFYDNFAGD 163 Query: 200 NDED 203 D D Sbjct: 164 RDAD 167 >gi|114775529|ref|ZP_01451097.1| UvrD/REP helicase family protein [Mariprofundus ferrooxydans PV-1] gi|114553640|gb|EAU56021.1| UvrD/REP helicase family protein [Mariprofundus ferrooxydans PV-1] Length = 1105 Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 5/126 (3%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 +L A +P S V A AGSGKT +L QR+LRLL P +L LT T+ AAAEM RVL Sbjct: 6 RLQARNPAASFLVQAPAGSGKTELLTQRILRLLAVVDAPEEILALTFTRKAAAEMRGRVL 65 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 E + E + K+ + ++ ++++ + + P L++ T+ +F A+ Sbjct: 66 EALAM-----TEPVDPASHKMDTWRLAQAALARSNACGWHLEKHPSRLRMMTLDSFTHAL 120 Query: 144 MQQFPL 149 Q PL Sbjct: 121 ASQMPL 126 >gi|161507624|ref|YP_001577578.1| ATP-dependent exonuclease subunit A [Lactobacillus helveticus DPC 4571] gi|251764556|sp|A8YVK0|ADDA_LACH4 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|160348613|gb|ABX27287.1| ATP-dependent exonuclease subunit A [Lactobacillus helveticus DPC 4571] Length = 1204 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 21/184 (11%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK ++ +D VSA+AGSGKT +LV+RVL+ +LA LL +T TKAAA EM Sbjct: 5 TKEQEKAINDRGHDILVSASAGSGKTTVLVERVLKEILAGTQVDELLVVTFTKAAAEEMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ A +TK + KP D R L I + TI AF Sbjct: 65 TRI---------------KAALTK-EMAKPG-VDYRYLREQLNQI----DTANISTIDAF 103 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C ++ +F + F I ++ L++E + ML + ++ + FY+ Sbjct: 104 CLDVIHRFYYSIELDPSFTILTDDTQATLLKERALREIEGEMLTSKDKAFRHFYDNFAGD 163 Query: 200 NDED 203 D D Sbjct: 164 RDAD 167 >gi|254796825|ref|YP_003081662.1| ATP-dependent DNA helicase, UvrD/REP family [Neorickettsia risticii str. Illinois] gi|254590070|gb|ACT69432.1| ATP-dependent DNA helicase, UvrD/REP family [Neorickettsia risticii str. Illinois] Length = 905 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 62/114 (54%), Gaps = 7/114 (6%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 +DP S W++++AG GKT +LV+R + LL++ +LC+T TK A AEM +R+ I+ Sbjct: 5 VTDPNVSVWINSSAGCGKTALLVKRAISLLVSKE--KNILCITFTKVATAEMHNRIFAIL 62 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 S ++D + + + D R L+ T +++QT+H+FC Sbjct: 63 GKLSVMNDTEMDEYLLSTINRTVKDPDY--VRKLVHT---ADALIQIQTLHSFC 111 >gi|238923931|ref|YP_002937447.1| DNA helicase II [Eubacterium rectale ATCC 33656] gi|238875606|gb|ACR75313.1| DNA helicase II [Eubacterium rectale ATCC 33656] Length = 1220 Score = 65.1 bits (157), Expect = 8e-09, Method: Composition-based stats. Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 34/188 (18%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R VSA AGSGKT +LV+R++ + + P +L +T TKAAAAEM RV Sbjct: 18 RDILVSAAAGSGKTAVLVERIVNRICVDNPPVDIDRMLVVTFTKAAAAEMRERV------ 71 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 S I ++ +KP+ ++ + L+ L + TI +FC ++Q Sbjct: 72 ---------SCAIDSLKEQKPDDENLQRQSTLVHNAL-------ITTIDSFCLFVVQNNF 115 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELKKAFYEILEI----SNDED 203 + N+ F I D+ + K ++++A LA + DN E +AF +++ ND Sbjct: 116 AQLNLDPDFRIGDQAELKLMLKDA----LAQVFEDNYAREDNEAFINLIDTYSKGRNDSA 171 Query: 204 IETLISDI 211 + ++ DI Sbjct: 172 VRQMVEDI 179 >gi|297584273|ref|YP_003700053.1| recombination helicase AddA [Bacillus selenitireducens MLS10] gi|297142730|gb|ADH99487.1| recombination helicase AddA [Bacillus selenitireducens MLS10] Length = 1244 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 35/179 (19%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++R + +P+ LL +T T AAA EM HR+ E L Sbjct: 29 VAAAAGSGKTAVLVERIIRKITDEENPADLDRLLIVTFTNAAAQEMRHRIGEA------L 82 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHL---LITILETPGGLKVQTIHAFCEAIMQQFPL 149 D+I S+ ++ HL L + + P + T+H+FC +I++ F Sbjct: 83 EDKI---------------SEQPRSLHLRRQLNLLHKAP----ISTLHSFCMSIVRDFYY 123 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETL 207 +I F I DE + L +E + N + FY+++E SND E L Sbjct: 124 VTDIDPSFRILDETEGVLLRDEVLEELFEEAYSSKNPD---GFYDMVERFSNDRSDEGL 179 >gi|311067549|ref|YP_003972472.1| ATP-dependent deoxyribonuclease subunit A [Bacillus atrophaeus 1942] gi|310868066|gb|ADP31541.1| ATP-dependent deoxyribonuclease subunit A [Bacillus atrophaeus 1942] Length = 1234 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 29/165 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++R + A +P +L +T T A+AAEM HR+ E L Sbjct: 28 VAAAAGSGKTAVLVERMIRKITAEENPIDVDRVLVVTFTNASAAEMKHRIAEA------L 81 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 E++ K+P + + LL + T+H+FC +++++ + Sbjct: 82 EKELV---------KRPGSLHIRRQLSLL-------NRASISTLHSFCLQVLRKYYYLID 125 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 + F IAD+ + + L +E L + D + +KAF+E+++ Sbjct: 126 LDPGFRIADQTEGELLGDE----VLDELFEDEYAKGEKAFFELVD 166 >gi|296332487|ref|ZP_06874948.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673768|ref|YP_003865440.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp. spizizenii str. W23] gi|296150405|gb|EFG91293.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412012|gb|ADM37131.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. spizizenii str. W23] Length = 1234 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 92/183 (50%), Gaps = 33/183 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++R + A +P LL +T T A+AAEM HR+ + L Sbjct: 28 VAAAAGSGKTAVLVERMIRKITAEENPIDVDQLLVVTFTNASAAEMKHRIADA------L 81 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 E++ K+P + + LL + T+H+FC +++++ + Sbjct: 82 EKELV---------KRPGSLHIRRQLSLL-------NRASISTLHSFCLQVLKKYYYLID 125 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDIETLI 208 + F IAD+ + + L +E L + D + +KAF+E+++ +D D++ L+ Sbjct: 126 LDPGFRIADQTEGELLGDE----VLDELFEDEYAKGEKAFFELVDRYTTDRHDLDLQFLV 181 Query: 209 SDI 211 + Sbjct: 182 KQV 184 >gi|319650046|ref|ZP_08004195.1| AddA protein [Bacillus sp. 2_A_57_CT2] gi|317398227|gb|EFV78916.1| AddA protein [Bacillus sp. 2_A_57_CT2] Length = 1250 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 93/182 (51%), Gaps = 28/182 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++ ++A+ P LL +T T A+AAEM HR+ E + Sbjct: 29 VAAAAGSGKTAVLVERIINKIIADEDPINVDELLVVTFTNASAAEMRHRIGEAL------ 82 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 ++ ++A+ P + + K LL + T+H+FC +++++ + Sbjct: 83 -EKAINAD--------PKSAHLRKQVSLL-------NRASISTLHSFCLEMIRKYYYMTD 126 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212 I F IADE +++ L +E + +E +AF+ +++ ++ +T + DII Sbjct: 127 IDPGFRIADETEAQLLRDEVLEELFEEEY---GKEGNEAFFALVDTFTNDRSDTALQDII 183 Query: 213 SN 214 + Sbjct: 184 RD 185 >gi|291527058|emb|CBK92644.1| recombination helicase AddA, Firmicutes type [Eubacterium rectale M104/1] Length = 1220 Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 34/188 (18%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R VSA AGSGKT +LV+R++ + + P +L +T TKAAAAEM RV Sbjct: 18 RDILVSAAAGSGKTAVLVERIVNRICVDNPPVDIDRMLVVTFTKAAAAEMRERV------ 71 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 S I ++ +KP+ ++ + L+ L + TI +FC ++Q Sbjct: 72 ---------SRAIDSLKEQKPDDENLQRQSTLVHNAL-------ITTIDSFCLFVVQNNF 115 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-----NEELKKAFYEILEISNDED 203 + N+ F I D+ + K ++++A LA + DN NEE + ND Sbjct: 116 AQLNLDPDFRIGDQAELKLMLKDA----LAQVFEDNYAREDNEEFINLIDTYSKGRNDSA 171 Query: 204 IETLISDI 211 + ++ DI Sbjct: 172 VRQMVEDI 179 >gi|291525355|emb|CBK90942.1| recombination helicase AddA, Firmicutes type [Eubacterium rectale DSM 17629] Length = 1220 Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 34/188 (18%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R VSA AGSGKT +LV+R++ + + P +L +T TKAAAAEM RV Sbjct: 18 RDILVSAAAGSGKTAVLVERIVNRICVDNPPVDIDRMLVVTFTKAAAAEMRERV------ 71 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 S I ++ +KP+ ++ + L+ L + TI +FC ++Q Sbjct: 72 ---------SRAIDSLKEQKPDDENLQRQSTLVHNAL-------ITTIDSFCLFVVQNNF 115 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-----NEELKKAFYEILEISNDED 203 + N+ F I D+ + K ++++A LA + DN NEE + ND Sbjct: 116 AQLNLDPDFRIGDQAELKLMLKDA----LAQVFEDNYAREDNEEFINLIDTYSKGRNDSA 171 Query: 204 IETLISDI 211 + ++ DI Sbjct: 172 VRQMVEDI 179 >gi|291483547|dbj|BAI84622.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp. natto BEST195] Length = 1232 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 92/183 (50%), Gaps = 33/183 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++R + A +P LL +T T A+AAEM HR+ E L Sbjct: 28 VAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA------L 81 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 E++ ++P + + LL + T+H+FC +++++ + Sbjct: 82 EKELV---------QRPGSLHIRRQLSLL-------NRASISTLHSFCLQVLKKYYYLID 125 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDIETLI 208 + F IAD+ + + L +E L + D + +KAF+E+++ +D D++ L+ Sbjct: 126 LDPGFRIADQTEGELLGDE----VLDELFEDEYAKGEKAFFELVDRYTTDRHDLDLQFLV 181 Query: 209 SDI 211 + Sbjct: 182 KQV 184 >gi|321314788|ref|YP_004207075.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis BSn5] gi|320021062|gb|ADV96048.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis BSn5] Length = 1232 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 92/183 (50%), Gaps = 33/183 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++R + A +P LL +T T A+AAEM HR+ E L Sbjct: 28 VAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA------L 81 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 E++ ++P + + LL + T+H+FC +++++ + Sbjct: 82 EKELV---------QRPGSLHIRRQLSLL-------NRASISTLHSFCLQVLKKYYYLID 125 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDIETLI 208 + F IAD+ + + L +E L + D + +KAF+E+++ +D D++ L+ Sbjct: 126 LDPGFRIADQTEGELLGDE----VLDELFEDEYAKGEKAFFELVDRYTTDRHDLDLQFLV 181 Query: 209 SDI 211 + Sbjct: 182 KQV 184 >gi|254514374|ref|ZP_05126435.1| UvrD/REP helicase family protein [gamma proteobacterium NOR5-3] gi|219676617|gb|EED32982.1| UvrD/REP helicase family protein [gamma proteobacterium NOR5-3] Length = 1108 Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 9/199 (4%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP S VSA AGSGKT +LV+R L LL P ++ +T T+ AAAEM RV + Sbjct: 12 AVDPLGSFCVSAPAGSGKTGLLVRRFLGLLARVKDPEHVVAITFTRKAAAEMRARV---V 68 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 A + + + + R L +L P L++QTI +FC + +Q Sbjct: 69 NALRDAEAGVTAGNPHEEALLAAAHAVREHDRALGWGLLANPSRLRIQTIDSFCGYLTRQ 128 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 P+ + D+ S+ L EA +S L + E + + L + D D ET Sbjct: 129 MPVLSGCGGQVTATDD--SRPLFREAIESFLHRELAQAGEG-QALDIQTLLLHLDNDWET 185 Query: 207 ---LISDIISNRTALKLIF 222 L+S +++ R + +F Sbjct: 186 AVELLSGLLARREQWQPVF 204 >gi|291535312|emb|CBL08424.1| recombination helicase AddA, Firmicutes type [Roseburia intestinalis M50/1] Length = 1237 Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 60/204 (29%), Positives = 93/204 (45%), Gaps = 34/204 (16%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R+ VSA AGSGKT +LV+R+++++ HP LL +T T AAAAEM R+ + Sbjct: 18 RNILVSAAAGSGKTAVLVERIIKIITDKEHPVDIDRLLIVTFTNAAAAEMRERIGNALE- 76 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 K N D R L ++L ++ TI +FC +++ Sbjct: 77 ----------------NALKENPDDEHLQRQL--SLLHNA---QITTIDSFCLYVIRNHF 115 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208 E ++ +F I DE + K L K+ LA ++L N EE F ++ + + Sbjct: 116 HEIDLEPNFRIGDEGELKLL----KEDVLAKVLLKNYEESAPEFLAFVDGYASGRNDAAL 171 Query: 209 SDIISNRTALKLIFFFFSYLWRRK 232 S +I L+L F SY W +K Sbjct: 172 SGMI-----LQLYEFSRSYPWPKK 190 >gi|315148450|gb|EFT92466.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4244] Length = 1264 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D K RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPEKRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207 +I F + +E L++E L N+E AFY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177 Query: 208 ISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 -DDGLTN-----LIFSFYEF 191 >gi|240144976|ref|ZP_04743577.1| ATP-dependent nuclease subunit A [Roseburia intestinalis L1-82] gi|257202969|gb|EEV01254.1| ATP-dependent nuclease subunit A [Roseburia intestinalis L1-82] Length = 1237 Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 34/204 (16%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R+ VSA AGSGKT +LV+R+++++ HP LL +T T AAAAEM R+ Sbjct: 18 RNILVSAAAGSGKTAVLVERIIKIITDKEHPVDIDRLLIVTFTNAAAAEMRERI------ 71 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + ++P+ + + LL ++ TI +FC +++ Sbjct: 72 ---------GNALENALKEQPDDEHLQRQLSLL-------HNAQITTIDSFCLYVIRNHF 115 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208 E ++ +F I DE + K L K+ LA ++L N EE F ++ + + Sbjct: 116 HEIDLEPNFRIGDEGELKLL----KEDVLAKVLLKNYEESAPEFLAFVDGYASGRNDAAL 171 Query: 209 SDIISNRTALKLIFFFFSYLWRRK 232 S +I L+L F SY W +K Sbjct: 172 SGMI-----LQLYEFSRSYPWPKK 190 >gi|148244252|ref|YP_001218946.1| ATP-dependent DNA helicase [Candidatus Vesicomyosocius okutanii HA] gi|146326079|dbj|BAF61222.1| ATP-dependent DNA helicase [Candidatus Vesicomyosocius okutanii HA] Length = 1056 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 31/202 (15%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A D ++S + A AGSGKT +L QR L+LL + P +++ +T TK A +E++ RV+E Sbjct: 10 ALDVSQSFIIQAPAGSGKTELLTQRYLKLLSVSTSPESVIVMTFTKKAVSELTTRVIE-- 67 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGGLKVQT 135 S E+ QG +P + +++ L +L TP K+ T Sbjct: 68 -----------SLELA--QGNRPKDPHKQIIYDLAFQVLERSKELDWQLLNTPERFKILT 114 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I + I +P + + I+ + +A K TL +I N E + + I Sbjct: 115 IDSLSSLITSHYPSKNQLVPKKVISQNWARYSMYSQAAKQTLLAI---NELEYQDSVESI 171 Query: 196 -LEISNDED-IETLISDIISNR 215 L + N+ D LI+D+++ R Sbjct: 172 LLYLDNNIDRFYQLITDMLAKR 193 >gi|119503960|ref|ZP_01626041.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2080] gi|119459963|gb|EAW41057.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2080] Length = 1115 Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 54/168 (32%), Positives = 79/168 (47%), Gaps = 28/168 (16%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 ID +Q ++ L DPTRS V+A AGSGKT +L QR+L LL P +L +T T+ Sbjct: 2 IDSDTQIRTTAL---DPTRSFCVTAPAGSGKTELLTQRILALLPTVDRPEQVLAMTFTRK 58 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE------- 126 AAAEM R+L S L + E+ +S + R L + +L Sbjct: 59 AAAEMRERLL------SKLDEARRRVEVI--------ESYEQQTRDLALAVLAHADERNW 104 Query: 127 --TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 P ++TI + C + +Q P+ + + A+ EQ K L E A Sbjct: 105 SLDPEQFNLRTIDSLCADLTRQMPILSGLGG--AVEITEQDKPLFELA 150 >gi|291538110|emb|CBL11221.1| recombination helicase AddA, Firmicutes type [Roseburia intestinalis XB6B4] Length = 1237 Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 34/204 (16%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R+ VSA AGSGKT +LV+R+++++ HP LL +T T AAAAEM R+ Sbjct: 18 RNILVSAAAGSGKTAVLVERIIKIITDKDHPVDIDRLLIVTFTNAAAAEMRERI------ 71 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + ++P+ + + LL ++ TI +FC +++ Sbjct: 72 ---------GNALENALKEQPDDEHLQRQLSLL-------HNAQITTIDSFCLYVIRNHF 115 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208 E ++ +F I DE + K L K+ LA ++L N EE F ++ + + Sbjct: 116 HEIDLEPNFRIGDEGELKLL----KEDVLAKVLLKNYEESAPEFLAFVDGYASGRNDAAL 171 Query: 209 SDIISNRTALKLIFFFFSYLWRRK 232 S +I L+L F SY W +K Sbjct: 172 SGMI-----LQLYEFSRSYPWPKK 190 >gi|121594696|ref|YP_986592.1| UvrD/REP helicase [Acidovorax sp. JS42] gi|120606776|gb|ABM42516.1| UvrD/REP helicase [Acidovorax sp. JS42] Length = 1101 Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 84/164 (51%), Gaps = 9/164 (5%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 +A DP RS V A AG+GKT +LV R+LR LL P +L +T TK AA EM R+ E Sbjct: 25 IACDPQRSVAVEACAGAGKTWMLVSRMLRALLDGCAPHEILAITFTKKAAGEMRQRLQEW 84 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + ++ L E+ +G P ++ + + L L+ ++++T H++ A+ Sbjct: 85 LQEFAAKPLPDLEKELIA-RGIGPQRALDKREQLQKLYRQTLDAGRPVQIRTFHSWFAAL 143 Query: 144 MQQFPL----EANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 + PL + + +H+ + +++ + + E + LA++ D Sbjct: 144 LGTAPLAVLEQQGLPAHYDLLEDD--AEAVREVWRPYLAAVAQD 185 >gi|222110700|ref|YP_002552964.1| uvrd/rep helicase [Acidovorax ebreus TPSY] gi|221730144|gb|ACM32964.1| UvrD/REP helicase [Acidovorax ebreus TPSY] Length = 1101 Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 84/164 (51%), Gaps = 9/164 (5%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 +A DP RS V A AG+GKT +LV R+LR LL P +L +T TK AA EM R+ E Sbjct: 25 IACDPQRSVAVEACAGAGKTWMLVSRMLRALLDGCAPHEILAITFTKKAAGEMRQRLQEW 84 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + ++ L E+ +G P ++ + + L L+ ++++T H++ A+ Sbjct: 85 LQEFAAKPLPDLEKELIA-RGIGPQRALEKREQLQKLYRQTLDAGRPVQIRTFHSWFAAL 143 Query: 144 MQQFPL----EANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 + PL + + +H+ + +++ + + E + LA++ D Sbjct: 144 LGTAPLAVLEQQGLPAHYDLLEDD--AEAVREVWRPYLAAVAQD 185 >gi|71906108|ref|YP_283695.1| UvrD/REP helicase [Dechloromonas aromatica RCB] gi|71845729|gb|AAZ45225.1| UvrD/REP helicase [Dechloromonas aromatica RCB] Length = 1134 Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 17/137 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AG+GKT +L QR LRLL HP +L LT T AA EM R+L S E Sbjct: 26 VEAPAGAGKTELLTQRYLRLLAVVEHPEEVLALTFTNKAATEMRDRILG--------SLE 77 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLI-------TILETPGGLKVQTIHAFCEAIMQQFP 148 + S + K+ + + AR +L ++L PG L++ T+ + C ++ +Q P Sbjct: 78 LASGD--KLPEQPHKQLTFGLARQVLAHDAERGWSLLGHPGRLRITTLDSLCASLARQMP 135 Query: 149 LEANITSHFAIADEEQS 165 + S ++D+ ++ Sbjct: 136 YLSRFGSQPGVSDDAEA 152 >gi|322435329|ref|YP_004217541.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9] gi|321163056|gb|ADW68761.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9] Length = 1165 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 89/196 (45%), Gaps = 34/196 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 V A AGSGKT +L+QR L+LL A+ P+ +L +T T+ A EM RVL Sbjct: 32 VQAPAGSGKTGLLIQRFLKLLAADNVQDPAQVLAITFTRKATVEMRDRVL---------- 81 Query: 94 DEILSAEITKIQGKKPNKSD------------MSKARHLLITILETPGGLKVQTIHAFCE 141 ++ P ++D + K R +L++P L ++TI + C Sbjct: 82 -----TQLQSAHTGTPPRNDFDRLTLPLAQAVIEKDRRQGWNLLDSPHRLAIRTIDSVCV 136 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL--EIS 199 I + P+ + A+ E S L EA + TL ++ ++ L A +L + Sbjct: 137 DIARSLPILSGAAG--ALTPTEDSAPLHAEAARRTLM-LLGSEDKTLSTAIETVLLHRDA 193 Query: 200 NDEDIETLISDIISNR 215 N D+E LI+D++ R Sbjct: 194 NLADVENLIADMLQVR 209 >gi|254480724|ref|ZP_05093971.1| UvrD/REP helicase domain protein [marine gamma proteobacterium HTCC2148] gi|214039307|gb|EEB79967.1| UvrD/REP helicase domain protein [marine gamma proteobacterium HTCC2148] Length = 1115 Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 84/178 (47%), Gaps = 8/178 (4%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A D RS V+A AGSGKT +L+QR L LL P +L +T T+ AAAEM RVL+ + Sbjct: 12 ALDVVRSFCVTAPAGSGKTELLIQRFLALLARVKRPEQVLAITFTRKAAAEMRERVLQAL 71 Query: 87 -TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 A ++ E +T+ +S + HL I L ++TI +FC + + Sbjct: 72 QAARDKVAVEGEHQRVTRDLALAALESSDREQWHLARDISR----LNIKTIDSFCAGLTR 127 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 Q P+ + D+ + +L +EA S L SI + E +L N+ D Sbjct: 128 QMPILSRFGGQAQAVDD--ATELYKEA-VSELFSIAGTSRSEATDLDILLLHFDNNWD 182 >gi|300859922|ref|ZP_07106010.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TUSoD Ef11] gi|300850740|gb|EFK78489.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TUSoD Ef11] Length = 1264 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207 +I F + +E L++E L N+E AFY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177 Query: 208 ISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 -DDGLTN-----LIFSFYEF 191 >gi|239815308|ref|YP_002944218.1| UvrD/REP helicase [Variovorax paradoxus S110] gi|239801885|gb|ACS18952.1| UvrD/REP helicase [Variovorax paradoxus S110] Length = 1087 Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 7/130 (5%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHR 81 +A DP RS V A AG+GKT +LV R+LR LL + P +L +T TK AA EM R Sbjct: 21 VACDPRRSVAVEACAGAGKTWMLVSRILRALLEEGESACEPHEILAITFTKKAAGEMRER 80 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNK--SDMSKARHLLITILETPGGLKVQTIHAF 139 + + + ++ S E L E+ I+G +P+ + + + + L +LE ++ +T HA+ Sbjct: 81 LDQWLEQFAERSPEELVRELV-IRGVEPDAALAAVPRLQGLYRRLLEGGRPVQFRTFHAW 139 Query: 140 CEAIMQQFPL 149 +++ PL Sbjct: 140 FAGLLRNAPL 149 >gi|315573705|gb|EFU85896.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0309B] gi|315582680|gb|EFU94871.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0309A] Length = 1264 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207 +I F + +E L++E L N+E AFY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177 Query: 208 ISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 -DDGLTN-----LIFSFYEF 191 >gi|319778427|ref|YP_004129340.1| ATP-dependent DNA helicase pcrA [Taylorella equigenitalis MCE9] gi|317108451|gb|ADU91197.1| ATP-dependent DNA helicase pcrA [Taylorella equigenitalis MCE9] Length = 1109 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 6/156 (3%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I+ + ++ LA D ++S V A AGSGKT IL R+L LL P +L +T TK AA+ Sbjct: 5 IAADQKQRDLALDSSKSYIVQAPAGSGKTEILSTRILSLLCVVEKPEQILAITFTKKAAS 64 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV E + S+ E +E K+ + NK + + + ILE +++TI Sbjct: 65 EMLDRVYEKLLNHSNPEPE---SEFEKLSWELANKV-IQRDKEKNWKILENLDRFRIRTI 120 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 +F + ++ PL + + + + E ++ L EA Sbjct: 121 DSFTKNLISNTPLISGVGA--GVEFTENAESLFHEA 154 >gi|255973164|ref|ZP_05423750.1| UvrD/REP helicase [Enterococcus faecalis T1] gi|257422970|ref|ZP_05599960.1| exonuclease rexA [Enterococcus faecalis X98] gi|312951365|ref|ZP_07770263.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0102] gi|255964182|gb|EET96658.1| UvrD/REP helicase [Enterococcus faecalis T1] gi|257164794|gb|EEU94754.1| exonuclease rexA [Enterococcus faecalis X98] gi|310630625|gb|EFQ13908.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0102] Length = 1264 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207 +I F + +E L++E L N+E AFY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177 Query: 208 ISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 -DDGLTN-----LIFSFYEF 191 >gi|307274585|ref|ZP_07555765.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2134] gi|306508737|gb|EFM77827.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2134] Length = 1263 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207 +I F + +E L++E L N+E AFY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177 Query: 208 ISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 -DDGLTN-----LIFSFYEF 191 >gi|257082924|ref|ZP_05577285.1| exonuclease RexA [Enterococcus faecalis E1Sol] gi|256990954|gb|EEU78256.1| exonuclease RexA [Enterococcus faecalis E1Sol] Length = 1264 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207 +I F + +E L++E L N+E AFY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177 Query: 208 ISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 -DDGLTN-----LIFSFYEF 191 >gi|315170964|gb|EFU14981.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1342] Length = 1271 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 31 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 85 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 86 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 131 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207 +I F + +E L++E L N+E AFY++ SND Sbjct: 132 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 184 Query: 208 ISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 185 -DDGLTN-----LIFSFYEF 198 >gi|295112697|emb|CBL31334.1| DNA helicase/exodeoxyribonuclease V, subunit A [Enterococcus sp. 7L76] gi|315160943|gb|EFU04960.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0645] Length = 1264 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207 +I F + +E L++E L N+E AFY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177 Query: 208 ISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 -DDGLTN-----LIFSFYEF 191 >gi|317052675|ref|YP_004113791.1| UvrD/REP helicase [Desulfurispirillum indicum S5] gi|316947759|gb|ADU67235.1| UvrD/REP helicase [Desulfurispirillum indicum S5] Length = 1123 Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 51/154 (33%), Positives = 75/154 (48%), Gaps = 5/154 (3%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A D + S V A AGSGKT +L QR L LL + P +L +T T+ A EM RVL + Sbjct: 16 ALDISTSFIVQAPAGSGKTELLTQRFLALLGQVSEPEEILAITFTRKAVGEMRERVLGSL 75 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 L E +A + + + + R +LE P L++QTI A C +I++Q Sbjct: 76 RM--ALDAEPPAAPHLRTTWELARAALANARRQEW-NLLEHPTRLRIQTIDALCASIVRQ 132 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 P + + AI+DE +L +A TL + Sbjct: 133 IPYFSRLGGQMAISDE--PARLYRQAAMQTLEEL 164 >gi|227552897|ref|ZP_03982946.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis HH22] gi|227177969|gb|EEI58941.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis HH22] Length = 1264 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207 +I F + +E L++E L N+E AFY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177 Query: 208 ISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 -DDGLTN-----LIFSFYEF 191 >gi|327534744|gb|AEA93578.1| ATP-dependent nuclease subunit A [Enterococcus faecalis OG1RF] Length = 1271 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 31 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 85 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 86 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 131 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207 +I F + +E L++E L N+E AFY++ SND Sbjct: 132 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 184 Query: 208 ISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 185 -DDGLTN-----LIFSFYEF 198 >gi|229550393|ref|ZP_04439118.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis ATCC 29200] gi|229304515|gb|EEN70511.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis ATCC 29200] gi|315156546|gb|EFU00563.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0043] gi|315158289|gb|EFU02306.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0312] Length = 1271 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 31 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 85 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 86 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 131 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207 +I F + +E L++E L N+E AFY++ SND Sbjct: 132 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 184 Query: 208 ISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 185 -DDGLTN-----LIFSFYEF 198 >gi|29375689|ref|NP_814843.1| exonuclease RexA [Enterococcus faecalis V583] gi|81437087|sp|Q836J8|ADDA_ENTFA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|29343150|gb|AAO80913.1| exonuclease RexA [Enterococcus faecalis V583] Length = 1264 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207 +I F + +E L++E L N+E AFY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177 Query: 208 ISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 -DDGLTN-----LIFSFYEF 191 >gi|256965486|ref|ZP_05569657.1| UvrD/REP helicase [Enterococcus faecalis HIP11704] gi|307273804|ref|ZP_07555026.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0855] gi|256955982|gb|EEU72614.1| UvrD/REP helicase [Enterococcus faecalis HIP11704] gi|306509489|gb|EFM78537.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0855] Length = 1264 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207 +I F + +E L++E L N+E AFY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177 Query: 208 ISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 -DDGLTN-----LIFSFYEF 191 >gi|315168381|gb|EFU12398.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1341] Length = 1264 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207 +I F + +E L++E L N+E AFY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177 Query: 208 ISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 -DDGLTN-----LIFSFYEF 191 >gi|315144626|gb|EFT88642.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2141] Length = 1271 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 31 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 85 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 86 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 131 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207 +I F + +E L++E L N+E AFY++ SND Sbjct: 132 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 184 Query: 208 ISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 185 -DDGLTN-----LIFSFYEF 198 >gi|221308901|ref|ZP_03590748.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. subtilis str. 168] gi|221313225|ref|ZP_03595030.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318148|ref|ZP_03599442.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. subtilis str. JH642] gi|221322423|ref|ZP_03603717.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. subtilis str. SMY] gi|255767243|ref|NP_388944.2| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp. subtilis str. 168] gi|239938590|sp|P23478|ADDA_BACSU RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|225184870|emb|CAB12903.2| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. subtilis str. 168] Length = 1232 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 33/183 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++R + A +P LL +T T A+AAEM HR+ E L Sbjct: 28 VAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA------L 81 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 E++ ++P + + LL + T+H+FC +++++ + Sbjct: 82 EKELV---------QRPGSLHIRRQLSLL-------NRASISTLHSFCLQVLKKYYYLID 125 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDIETLI 208 + F IAD+ + + + +E L + D + +KAF+E+++ +D D++ L+ Sbjct: 126 LDPGFRIADQTEGELIGDE----VLDELFEDEYAKGEKAFFELVDRYTTDRHDLDLQFLV 181 Query: 209 SDI 211 + Sbjct: 182 KQV 184 >gi|142440|gb|AAA22201.1| ATP-dependent nuclease [Bacillus subtilis] gi|2226192|emb|CAA74482.1| ATP-dependent nuclease [Bacillus subtilis subsp. subtilis str. 168] Length = 1232 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 33/183 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++R + A +P LL +T T A+AAEM HR+ E L Sbjct: 28 VAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA------L 81 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 E++ ++P + + LL + T+H+FC +++++ + Sbjct: 82 EKELV---------QRPGSLHIRRQLSLL-------NRASISTLHSFCLQVLKKYYYLID 125 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDIETLI 208 + F IAD+ + + + +E L + D + +KAF+E+++ +D D++ L+ Sbjct: 126 LDPGFRIADQTEGELIGDE----VLDELFEDEYAKGEKAFFELVDRYTTDRHDLDLQFLV 181 Query: 209 SDI 211 + Sbjct: 182 KQV 184 >gi|315174632|gb|EFU18649.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1346] Length = 1271 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 31 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 85 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 86 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 131 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207 +I F + +E L++E L N+E AFY++ SND Sbjct: 132 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 184 Query: 208 ISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 185 -DDGLTN-----LIFSFYEF 198 >gi|315153691|gb|EFT97707.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0031] Length = 1271 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 31 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 85 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 86 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 131 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207 +I F + +E L++E L N+E AFY++ SND Sbjct: 132 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 184 Query: 208 ISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 185 -DDGLTN-----LIFSFYEF 198 >gi|291562493|emb|CBL41309.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [butyrate-producing bacterium SS3/4] Length = 571 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 25/134 (18%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R+ VSA AGSGKT +LV+R++R++ HP LL +T T AAAAEM RV TA Sbjct: 18 RNLLVSAAAGSGKTAVLVERIIRMITDPEHPVDIDKLLVMTFTNAAAAEMRERVE---TA 74 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 L DE P ++ + L+ K+ TI +FC ++++ Sbjct: 75 LGKLLDE------------DPGNKNLERQNTLIHHA-------KITTIDSFCLNLLREHF 115 Query: 149 LEANITSHFAIADE 162 E ++ F +ADE Sbjct: 116 HELDLDPGFRVADE 129 >gi|227518367|ref|ZP_03948416.1| possible ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis TX0104] gi|227074045|gb|EEI12008.1| possible ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis TX0104] Length = 708 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 33/200 (16%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETL 207 +I F + +E L++E L N+E AFY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTANFSNDRS---- 177 Query: 208 ISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 -DDGLTN-----LIFSFYEF 191 >gi|78043588|ref|YP_360999.1| exonuclease RexA [Carboxydothermus hydrogenoformans Z-2901] gi|123575608|sp|Q3AA35|ADDA_CARHZ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|77995703|gb|ABB14602.1| exonuclease RexA [Carboxydothermus hydrogenoformans Z-2901] Length = 1167 Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 29/182 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 VSA AG+GKT +LV+RVL +L + P LL +T T+AAA EM R Sbjct: 21 VSAAAGAGKTSVLVERVLSRVLTDTPPVDIDRLLVVTFTEAAAGEMKER----------- 69 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 L E+ K + P S + + LL + T+H+FC I++++ Sbjct: 70 ----LGTELLKRLNEDPGNSRILEQLELLPVA-------DISTLHSFCHKIIRKYGRVCG 118 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212 + FAI + + L K L I+ + E+ + + +LE NDE + + ++I Sbjct: 119 YETKFAILEGPRETYL----KNKVLEEILEERYEKGDRELFALLEYLNDEKNDRNLKELI 174 Query: 213 SN 214 N Sbjct: 175 LN 176 >gi|242309299|ref|ZP_04808454.1| helicase [Helicobacter pullorum MIT 98-5489] gi|239524340|gb|EEQ64206.1| helicase [Helicobacter pullorum MIT 98-5489] Length = 921 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 9/136 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSHL 92 ++A+AGSGKT+ LV R L LL A PS +L LT TK AA EM R+ + I + + Sbjct: 8 LNASAGSGKTYRLVLRYLELLFLGAKPSEILTLTFTKKAAKEMEERIAKSIGEIYQYRND 67 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILET--PGGLKVQTIHAFCEAIMQQFPLE 150 D I E I+ +K+D K + + I + LK+ TI +F + I++ F Sbjct: 68 IDYINKLECISIK----DKNDFGKLQEKIHQIYHSFLKEDLKITTIDSFFQRILKSFCWY 123 Query: 151 ANITSHFAIADEEQSK 166 + F I +++ K Sbjct: 124 VGVEYDFEIQSDDREK 139 >gi|317405925|gb|EFV86204.1| nuclease/helicase [Achromobacter xylosoxidans C54] Length = 1190 Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 6/149 (4%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 DP RS V A AGSGKT +L R+L LL P ++ +T T+ AA+EM RVL + Sbjct: 19 DPARSFLVQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAASEMHARVLSKLRR 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 E + + + ++ HL L+ P L ++TI +FC +++ P Sbjct: 79 GLDAPPEAAHERRSWDLARAALARNDAQQWHL----LDHPARLAIRTIDSFCAGLVRSMP 134 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTL 177 + + I D+ ++ E A ++TL Sbjct: 135 WLSELGGMPEITDDARAH--YEAAARATL 161 >gi|253580235|ref|ZP_04857501.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848328|gb|EES76292.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 1269 Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 55/198 (27%), Positives = 87/198 (43%), Gaps = 25/198 (12%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + TK +Q + R+ VSA AGSGKT +LV+R+L + HP LL +T T+A Sbjct: 3 VQWTKEQQEVIRLRDRNILVSAAAGSGKTAVLVERILSKITDKEHPVDIDRLLIMTFTRA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ SA I K + P+ + + LL T ++ Sbjct: 63 AAGEMKERI---------------SAAIEKALCEDPDNEHLQRQTTLLHTA-------QI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TI FC I++ + + + ADE + K L + K+ L +E+ +K Sbjct: 101 TTIDGFCAYIIRNYFHLIGLDPGYRTADEGELKLLRGDVVKALLEEYYAKKDEKFQKFVE 160 Query: 194 EILEISNDEDIETLISDI 211 +DE++ LI + Sbjct: 161 CFATGKSDENLGNLIQKL 178 >gi|325125706|gb|ADY85036.1| ATP-dependent exonuclease subunit A [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 1227 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 20/156 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA+AGSGKT +LV+RV+R ++ + + LL +T T+AAA+EM R+ + Sbjct: 22 VSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAASEMKQRIKQ---------- 71 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++Q + ++D S+A L + E + + TI +FC ++++F +I Sbjct: 72 --------RLQDRLQEETDASQADFLRRQLAEIDTAI-ISTIDSFCLDVIRRFYFAIDID 122 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 F+I + +L++E + + L N ++ KK Sbjct: 123 PDFSILTDATQIELLKERALRDVENGYLQNEDQAKK 158 >gi|256371278|ref|YP_003109102.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331] gi|256007862|gb|ACU53429.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331] Length = 715 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 38/149 (25%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 S++ S P V A AGSGKT +L +RV LL A PS++L +T T AA EM+ R Sbjct: 12 SQREAVSAPIGPVLVLAGAGSGKTRVLTRRVAWLLAAGERPSSILAITFTNKAAGEMAER 71 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V ++ PN GL V T HA C Sbjct: 72 VRSLV---------------------GPNAD-----------------GLWVSTFHAACA 93 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIE 170 +++ P + S ++I D++ +++L+E Sbjct: 94 RMLRLHPELGGLRSGWSIYDQDDARRLLE 122 >gi|308173040|ref|YP_003919745.1| ATP-dependent deoxyribonuclease subunit A [Bacillus amyloliquefaciens DSM 7] gi|307605904|emb|CBI42275.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus amyloliquefaciens DSM 7] Length = 1235 Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 33/187 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R++R + A P LL +T T A+AAEM HR+ E Sbjct: 25 RDILVAAAAGSGKTAVLVERMIRKITAEEEPVDVDRLLVVTFTNASAAEMKHRIAE---- 80 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K K P + + LL + T+H+FC +++++ Sbjct: 81 -----------ALEKELAKNPGSLHIRRQLSLL-------NRASISTLHSFCLQVLKKYY 122 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F +AD+ + + L +E L + D + +AFYE+++ +D D+ Sbjct: 123 YMIDLDPGFRMADQTEGELLGDE----VLDELFEDEYAKGNQAFYELVDRYTTDRHDLDL 178 Query: 205 ETLISDI 211 + L+ + Sbjct: 179 QDLVKRV 185 >gi|91788136|ref|YP_549088.1| UvrD/REP helicase [Polaromonas sp. JS666] gi|91697361|gb|ABE44190.1| UvrD/REP helicase [Polaromonas sp. JS666] Length = 1095 Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 17/141 (12%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLL--------ANAHPSTLLCLTHTKAAAAE 77 +A +P RS V A AG+GKT +LV R++R LL A P +L +T TK AA E Sbjct: 24 IACNPRRSVAVEACAGAGKTWMLVSRIVRALLDGAGGGPDAQVRPHEILAITFTKKAAGE 83 Query: 78 MSHRVLEIITAWSHLSDEILSAEI---------TKIQGKKPNKSDMSKARHLLITILETP 128 M R+ + + A+ H D L E+ + +G K + +L +IL + Sbjct: 84 MRERLDDWLKAFVHADDATLQRELEMRGVRFGDSSEKGLKAALEMRKQLSNLYRSILASG 143 Query: 129 GGLKVQTIHAFCEAIMQQFPL 149 ++++T H++ A+++ P+ Sbjct: 144 RSVQIRTFHSWFAALLRSAPV 164 >gi|328911095|gb|AEB62691.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus amyloliquefaciens LL3] Length = 1234 Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 33/187 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R++R + A P LL +T T A+AAEM HR+ E Sbjct: 24 RDILVAAAAGSGKTAVLVERMIRKITAEEEPVDVDRLLVVTFTNASAAEMKHRIAE---- 79 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K K P + + LL + T+H+FC +++++ Sbjct: 80 -----------ALEKELAKNPGSLHIRRQLSLL-------NRASISTLHSFCLQVLKKYY 121 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F +AD+ + + L +E L + D + +AFYE+++ +D D+ Sbjct: 122 YMIDLDPGFRMADQTEGELLGDE----VLDELFEDEYAKGNQAFYELVDRYTTDRHDLDL 177 Query: 205 ETLISDI 211 + L+ + Sbjct: 178 QDLVKRV 184 >gi|325686249|gb|EGD28292.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 1227 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 20/156 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA+AGSGKT +LV+RV+R ++ + + LL +T T+AAA+EM R+ + Sbjct: 22 VSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAASEMKQRIKQ---------- 71 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++Q + ++D S+A L + E + + TI +FC ++++F +I Sbjct: 72 --------RLQDRLQEETDASQADFLRRQLAEIDTAI-ISTIDSFCLDVIRRFYFAIDID 122 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 F+I + +L++E + + L N ++ KK Sbjct: 123 PDFSILTDATQIELLKERALRDVENGYLQNEDQAKK 158 >gi|312903646|ref|ZP_07762822.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0635] gi|310632999|gb|EFQ16282.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0635] Length = 1264 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 35/201 (17%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206 +I F + DE ++ L E+ + +N EE FY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDR---- 176 Query: 207 LISDIISNRTALKLIFFFFSY 227 S+ KLIF F+ + Sbjct: 177 ------SDDGLTKLIFSFYEF 191 >gi|116514017|ref|YP_812923.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275213|sp|Q04AN7|ADDA_LACDB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116093332|gb|ABJ58485.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 1227 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 20/156 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA+AGSGKT +LV+RV+R ++ + + LL +T T+AAA+EM R+ + Sbjct: 22 VSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAASEMKQRIKQ---------- 71 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++Q + ++D S+A L + E + + TI +FC ++++F +I Sbjct: 72 --------RLQDRLQEETDASQADFLRRQLAEIDTAI-ISTIDSFCLDVIRRFYFAIDID 122 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 F+I + +L++E + + L N ++ KK Sbjct: 123 PDFSILTDATQIELLKERALRDVENGYLQNEDQAKK 158 >gi|328951963|ref|YP_004369297.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109] gi|328452287|gb|AEB08116.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109] Length = 1137 Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 32/166 (19%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 + ++ LA +P+ S V A AGSGKT +L++R L LL P +L LT T+ AA E+ Sbjct: 9 QRDRELAVNPSYSVHVEAPAGSGKTTVLLKRYLTLLARVEEPEEVLALTFTRKAAGELRA 68 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH------LLITILETPGG---- 130 R+ + ++QG SD++ ++H L T+ Sbjct: 69 RIQQ------------------QLQGGTEQPSDVAPSQHAVELRELAQTVSHQQADKKNG 110 Query: 131 ----LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 L++ T H+FC +++ P AN+ F + ++ ++ L +EA Sbjct: 111 YFERLQISTFHSFCAQLLRLAPHNANLPPDFQLIEDREADWLKKEA 156 >gi|300812417|ref|ZP_07092847.1| ATP-dependent nuclease subunit A [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496584|gb|EFK31676.1| ATP-dependent nuclease subunit A [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 1227 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 20/156 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA+AGSGKT +LV+RV+R ++ + + LL +T T+AAA+EM R+ + Sbjct: 22 VSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAASEMKQRIKQ---------- 71 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++Q + ++D S+A L + E + + TI +FC ++++F +I Sbjct: 72 --------RLQDRLQEETDASQADFLRRQLAEIDTAI-ISTIDSFCLDVIRRFYFAIDID 122 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 F+I + +L++E + + L N ++ KK Sbjct: 123 PDFSILTDATQIELLKERALRDVENGYLQNEDQAKK 158 >gi|323489925|ref|ZP_08095147.1| ATP-dependent nuclease subunit A [Planococcus donghaensis MPA1U2] gi|323396432|gb|EGA89256.1| ATP-dependent nuclease subunit A [Planococcus donghaensis MPA1U2] Length = 1202 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 25/147 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 VSA AGSGKT +L+ R++ +LA P LL +T T A+AAEM HR Sbjct: 28 VSAAAGSGKTAVLINRMIEKVLAEDDPISVDELLVVTFTNASAAEMRHR----------- 76 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 +S + K + P+ S + K L+ ++ T+H+FC +++Q+ Sbjct: 77 ----MSKALEKAVAENPDSSHLRKQLRLI-------NKAQISTLHSFCLQVVKQYAYLLE 125 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLAS 179 I F IA E ++ L ++ ++ L S Sbjct: 126 IDPGFRIAGETEAALLRDDVLEAVLES 152 >gi|104774001|ref|YP_618981.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|123251916|sp|Q1GAA9|ADDA_LACDA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|103423082|emb|CAI97803.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 1227 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 20/156 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA+AGSGKT +LV+RV+R ++ + + LL +T T+AAA+EM R+ + Sbjct: 22 VSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAASEMKQRIKQ---------- 71 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++Q + ++D S+A L + E + + TI +FC ++++F +I Sbjct: 72 --------RLQDRLQEETDASQADFLRRQLAEIDTAI-ISTIDSFCLDVIRRFYFAIDID 122 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 F+I + +L++E + + L N ++ KK Sbjct: 123 PDFSILTDATQIELLKERALRDVENGYLQNEDQAKK 158 >gi|224418267|ref|ZP_03656273.1| putative recombination protein RecB [Helicobacter canadensis MIT 98-5491] Length = 419 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 8/131 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 ++A+AGSGKT+ LV R L LL A PS +L LT TK AA EM R+++ I ++ Sbjct: 8 LNASAGSGKTYRLVLRYLELLFLGAKPSEILTLTFTKKAAKEMEERIVKSIQEIYQRKND 67 Query: 96 ---ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 I E I + + ++K + + LK+ TI +F + I++ F Sbjct: 68 REYIKKLEFISINDLEGIEQKITKIYYEFLR-----EDLKITTIDSFFQRILKSFCWYVG 122 Query: 153 ITSHFAIADEE 163 + ++F I +E+ Sbjct: 123 VENNFEIQNED 133 >gi|269468160|gb|EEZ79862.1| ATP-dependent DNA helicase [uncultured SUP05 cluster bacterium] Length = 1058 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 6/163 (3%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A D TRS V A AGSGKT +L QR L+LL P ++ +T T A E++ RVL + Sbjct: 10 ALDVTRSFIVQAPAGSGKTELLAQRYLKLLSICDDPENVMAMTFTNKAVDELTERVLSSL 69 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + + + +IT K M ++++ +L+ P LK+ TI I + Sbjct: 70 KSTNEPRPKQAHKQITYDLALKV----MERSQNRNWQLLQMPQRLKIFTIDGLSSLITGR 125 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 +P + +A + + KK+ A + L +M+D+ E K Sbjct: 126 YPTPLQLVPPRIMAQDWERKKVYRLAAEQVL--VMIDDEEHSK 166 >gi|212640054|ref|YP_002316574.1| ATP-dependent exoDNAse (exonuclease V) subunit beta (contains helicase and exonuclease domains) [Anoxybacillus flavithermus WK1] gi|251764497|sp|B7GM51|ADDA_ANOFW RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|212561534|gb|ACJ34589.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Anoxybacillus flavithermus WK1] Length = 1209 Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 26/195 (13%) Query: 18 SQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 SQ EQ A T + V+A AGSGKT +LV+R+++ +L P LL +T T A Sbjct: 9 SQWTDEQWQAIYATGQHTLVAAAAGSGKTAVLVERIIQKILHKERPIDVDRLLVVTFTNA 68 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ E + + K+P+ + + LL + Sbjct: 69 AAAEMRQRIGE---------------ALERALEKEPHSLHLRRQLSLLQKA-------SI 106 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+FC +++++ I F IADE + L EE ++ +N+E Sbjct: 107 STIHSFCLDVIRKYYYVIGIDPVFRIADEGEMALLKEEVLETLFEQYYAENDEPFLTVVD 166 Query: 194 EILEISNDEDIETLI 208 D D++TLI Sbjct: 167 RYTSDRTDADLQTLI 181 >gi|257866180|ref|ZP_05645833.1| UvrD/REP helicase [Enterococcus casseliflavus EC30] gi|257872511|ref|ZP_05652164.1| UvrD/REP helicase [Enterococcus casseliflavus EC10] gi|257800114|gb|EEV29166.1| UvrD/REP helicase [Enterococcus casseliflavus EC30] gi|257806675|gb|EEV35497.1| UvrD/REP helicase [Enterococcus casseliflavus EC10] Length = 1225 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 86/177 (48%), Gaps = 22/177 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LV+RV+ L A +LL +T T+AAA EM R+ Sbjct: 30 VSASAGSGKTTVLVRRVIEKLKAGTTIDSLLIVTFTEAAAREMKERIQ------------ 77 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +Q +SD K +H + + P + T+HAFC ++++F ++ Sbjct: 78 ------VALQQAINQESDEQKRQHFVRQLQLLPTA-NISTLHAFCLTVIRRFYYLIDLDP 130 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212 +F + +E L++E + L + + N+E AF+ + E + + + + D+I Sbjct: 131 NFRMMTDETEILLMKEEIWTQLRNQQYEANDE---AFFRLTENFSSDRSDEGVGDLI 184 >gi|160881547|ref|YP_001560515.1| recombination helicase AddA [Clostridium phytofermentans ISDg] gi|251764520|sp|A9KTE6|ADDA_CLOPH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|160430213|gb|ABX43776.1| recombination helicase AddA [Clostridium phytofermentans ISDg] Length = 1377 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 92/206 (44%), Gaps = 52/206 (25%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 VSA AGSGKT +LV+R++ + + P LL +T TKAAA EM R+ Sbjct: 23 VSAAAGSGKTAVLVERIINRITSENSPINIDQLLIVTFTKAAAGEMRERI---------- 72 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 A I K ++P+ + K LL + ++ TI +FC ++ Sbjct: 73 -----GAAIEKKVLEQPDNVHLQKQLTLLYSA-------QITTIDSFCLSV--------- 111 Query: 153 ITSHFAIADEEQSKKLIEEA-----KKSTLASIMLDNNEELKKAFYEILEI----SNDED 203 I +HF D + S ++ EEA K LA+++ + EE + F E +E +DE Sbjct: 112 IRNHFHTIDLDPSFRIAEEAELMLLKSDVLATLLEEKYEEGAEDFLEFVECYSASKSDEP 171 Query: 204 IETLISDIISNRTALKLIFFFFSYLW 229 IE I LKL F SY + Sbjct: 172 IENFI---------LKLYQFSQSYPY 188 >gi|89098018|ref|ZP_01170904.1| AddA [Bacillus sp. NRRL B-14911] gi|89087181|gb|EAR66296.1| AddA [Bacillus sp. NRRL B-14911] Length = 1254 Score = 62.0 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 30/181 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++ +++ P LL +T T A+AAEM HR+ E Sbjct: 32 VAAAAGSGKTAVLVERIINKIVSREEPVNVDELLVVTFTNASAAEMRHRIGE-------- 83 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + K + P + + K LL + T+H+FC +++++ + Sbjct: 84 -------ALEKAINRDPQSAHLRKQLSLL-------SRASISTLHSFCLEVIRKYYYLID 129 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYEILEISNDEDIETLISDI 211 I F IADE + + L +E + +NNE+ FY +++ + +T + DI Sbjct: 130 IDPGFRIADETEGQLLRDEVLEELFEEEYGKENNED----FYRLVDAFTSDRSDTALQDI 185 Query: 212 I 212 I Sbjct: 186 I 186 >gi|257875815|ref|ZP_05655468.1| UvrD/REP helicase [Enterococcus casseliflavus EC20] gi|257809981|gb|EEV38801.1| UvrD/REP helicase [Enterococcus casseliflavus EC20] Length = 1225 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 22/177 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LV+RV+ L A +LL +T T+AAA EM R+ Sbjct: 30 VSASAGSGKTTVLVRRVIEKLKAGTTIDSLLIVTFTEAAAREMKERIQ------------ 77 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +Q +SD K +H + + P + T+HAFC ++++F ++ Sbjct: 78 ------VALQQAINQESDEQKRQHFVRQLQLLPTA-NISTLHAFCLTVIRRFYYLIDLDP 130 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212 +F + +E L++E + L + N+E AF+ + E + + + + D+I Sbjct: 131 NFRMMTDETEILLMKEEIWTQLRDQQYEANDE---AFFRLTENFSSDRSDEGVGDLI 184 >gi|134093954|ref|YP_001099029.1| putative exonuclease V [Herminiimonas arsenicoxydans] gi|133737857|emb|CAL60902.1| putative ATP-dependent exoDNAse (exonuclease V) beta subunit RecB [Herminiimonas arsenicoxydans] Length = 1096 Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 57/192 (29%), Positives = 99/192 (51%), Gaps = 5/192 (2%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 +A DP RS V A AGSGKT +LV RVLRLLLA P+ +L +T T+ AA EM R++++ Sbjct: 29 IACDPARSVVVEACAGSGKTWLLVARVLRLLLAGTEPAAILAITFTRKAAQEMRERLMQL 88 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNK--SDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + L E + + +G ++ + + AR L +L +P L + T H++ + Sbjct: 89 LHELT-LKPEADVLTLLRERGVADHELLALLPLARGLYERVLRSPQALSIDTFHSWFARL 147 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 +Q PL + + +A+ E + +L +A + ++ +N+E+K A + D + Sbjct: 148 VQIAPLASGVPHGYALT--ESTGELSSDAYSRFMQTVNEADNQEVKDALIALYAQVGDSN 205 Query: 204 IETLISDIISNR 215 L+ R Sbjct: 206 ARNLLDAFAGKR 217 >gi|94311069|ref|YP_584279.1| DNA helicase/exodeoxyribonuclease V subunit A [Cupriavidus metallidurans CH34] gi|93354921|gb|ABF09010.1| UvrD/REP helicase [Cupriavidus metallidurans CH34] Length = 1187 Score = 62.0 bits (149), Expect = 7e-08, Method: Composition-based stats. Identities = 55/191 (28%), Positives = 101/191 (52%), Gaps = 5/191 (2%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP RS V A AGSGKT +LV R++RLLLA A P +L +T T+ AA EM R+LE++ Sbjct: 23 ACDPGRSVVVEACAGSGKTWLLVARLVRLLLAGAAPHEILAITFTRKAAEEMRERLLEVL 82 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARH--LLITILETPGGLKVQTIHAFCEAIM 144 + + +DE + ++ +++G P+ + + R L +L +PG + + T H + ++ Sbjct: 83 SQLAGGTDEAVLTQL-EMRGLSPDAARAALPRARTLHAQVLASPGRMAIDTFHGWFGTLL 141 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204 + PL + I ++ E + ++ EA ++ +L++A+ +++ D Sbjct: 142 RGAPLSSGIVPGASL--REDALRMKREAWAPFWRALAQPQYADLREAYEALVDAIGDFQA 199 Query: 205 ETLISDIISNR 215 L+ + R Sbjct: 200 RGLLDRMFHAR 210 >gi|325570415|ref|ZP_08146192.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus casseliflavus ATCC 12755] gi|325156625|gb|EGC68802.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus casseliflavus ATCC 12755] Length = 1225 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 22/177 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LV+RV+ L A +LL +T T+AAA EM R+ Sbjct: 30 VSASAGSGKTTVLVRRVIEKLKAGTTIDSLLIVTFTEAAAREMKERIQ------------ 77 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +Q +SD K +H + + P + T+HAFC ++++F ++ Sbjct: 78 ------AALQQAINQESDEQKRQHFVRQLQLLPTA-NISTLHAFCLTVIRRFYYLIDLDP 130 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212 +F + +E L++E + L + N+E AF+ + E + + + + D+I Sbjct: 131 NFRMMTDETEILLMKEEIWTQLRDQQYEANDE---AFFRLTENFSSDRSDEGVGDLI 184 >gi|154485117|ref|ZP_02027565.1| hypothetical protein EUBVEN_02840 [Eubacterium ventriosum ATCC 27560] gi|149734070|gb|EDM50189.1| hypothetical protein EUBVEN_02840 [Eubacterium ventriosum ATCC 27560] Length = 1220 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 25/148 (16%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAA 76 T +Q + R+ VSA AGSGKT +LV+R+++++ +P+ LL +T T+AAA+ Sbjct: 4 TDKQQKVIDTRDRNILVSAAAGSGKTAVLVERIIKMITDEENPTDVNQLLVVTFTRAAAS 63 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ E + K++ PN ++ K L+ + TI Sbjct: 64 EMKERIREA---------------LEKMEEDNPNDLNVQKQLSLI-------HNANISTI 101 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQ 164 +FC +++ + ++ +F IADE + Sbjct: 102 DSFCARVVKDNFDKIDLDPNFRIADENE 129 >gi|284048669|ref|YP_003399008.1| Exodeoxyribonuclease V [Acidaminococcus fermentans DSM 20731] gi|283952890|gb|ADB47693.1| Exodeoxyribonuclease V [Acidaminococcus fermentans DSM 20731] Length = 1116 Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 28/165 (16%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 + S T +Q S R+ VSA AGSGKT +LV+R L++L A +L +T T+ A Sbjct: 1 MASFTPQQQEAISTLDRNVSVSAGAGSGKTRVLVERFLKILQERKATAQEILAITFTRKA 60 Query: 75 AAEMSHRV----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 A EM RV L+ + A + ++ E ++ + P Sbjct: 61 AREMRERVQKGILDRLGAAAEPEEKAYWQEQLQLADRAP--------------------- 99 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + TI +FC ++++ P+EA + +FA+ +E Q + EE ++ Sbjct: 100 --ITTIDSFCSQVLRENPVEAGLDPNFAVKEEYQIRAFREETAQA 142 >gi|304385834|ref|ZP_07368178.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus acidilactici DSM 20284] gi|304328338|gb|EFL95560.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus acidilactici DSM 20284] Length = 1238 Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 21/153 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T S+Q + VSA+AGSGKT +LV+RV++ ++ LL +T T+AAAAEM Sbjct: 7 TPSQQQAIDSSGHNILVSASAGSGKTSVLVERVIQKIINGEDVDRLLVVTFTEAAAAEMK 66 Query: 80 HRV-LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ I+ S + D L ++ GK N + + T+HA Sbjct: 67 ERIRAAIMKKISEVKDADLQNHLSLQLGKLNNAN--------------------ISTLHA 106 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 FC A+++ + ++ F I D +S+ L E+ Sbjct: 107 FCMAVIRNYYYVIDLDPAFRIMDPTESELLKEQ 139 >gi|270289913|ref|ZP_06196139.1| recombination helicase AddA [Pediococcus acidilactici 7_4] gi|270281450|gb|EFA27282.1| recombination helicase AddA [Pediococcus acidilactici 7_4] Length = 1238 Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 21/153 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T S+Q + VSA+AGSGKT +LV+RV++ ++ LL +T T+AAAAEM Sbjct: 7 TPSQQQAIDSSGHNILVSASAGSGKTSVLVERVIQKIINGEDVDRLLVVTFTEAAAAEMK 66 Query: 80 HRV-LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ I+ S + D L ++ GK N + + T+HA Sbjct: 67 ERIRAAIMKKISEVKDADLQNHLSLQLGKLNNAN--------------------ISTLHA 106 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 FC A+++ + ++ F I D +S+ L E+ Sbjct: 107 FCMAVIRNYYYVIDLDPAFRIMDPTESELLKEQ 139 >gi|331092164|ref|ZP_08340994.1| recombination helicase AddA [Lachnospiraceae bacterium 2_1_46FAA] gi|330401936|gb|EGG81510.1| recombination helicase AddA [Lachnospiraceae bacterium 2_1_46FAA] Length = 1197 Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 29/184 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 ++ T ++ + S R+ VSA AGSGKT +LV+R++ +L + P LL +T T+A Sbjct: 3 VNWTPEQEKVISLRNRNILVSAAAGSGKTAVLVERIITMLTKDEPPINVDELLIVTFTEA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA+EM R+L + I K + P+ + K L+ + + + Sbjct: 63 AASEMKERIL---------------SAIEKKLEENPDNVHLQKQSTLIHSAM-------I 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+FC ++++++ ++ F I +E + K L +K L ++ + E+ K F Sbjct: 101 TTIHSFCLSVIREYFHTIDLDPSFRIGEEGELKLL----QKEVLQELLEEQYEKADKKFL 156 Query: 194 EILE 197 +E Sbjct: 157 SFVE 160 >gi|313123657|ref|YP_004033916.1| ATP-dependent helicase/nuclease subunit a [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280220|gb|ADQ60939.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 1227 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 20/156 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA+AGSGKT +LV+RV+R ++ + + LL +T T+AAA+EM R+ + Sbjct: 22 VSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAASEMKQRIKQ---------- 71 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++Q + ++D S+A L + E + + TI +FC ++++F +I Sbjct: 72 --------RLQDRLQEETDASQADFLRRQLAEIDTAI-ISTIDSFCLDVIRRFYFAIDID 122 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 F+I + +L++E + + L N + KK Sbjct: 123 PDFSILTDATQIELLKERALRDVENDYLQNENQAKK 158 >gi|254457061|ref|ZP_05070489.1| UvrD/REP helicase [Campylobacterales bacterium GD 1] gi|207085853|gb|EDZ63137.1| UvrD/REP helicase [Campylobacterales bacterium GD 1] Length = 905 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 14/163 (8%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A+AGSGKT +LV R L LL A P+ +L LT T AA EM R++ + H + Sbjct: 10 ASAGSGKTFMLVVRYLSLLFKGATPNKILALTFTNKAAFEMQERIVLTLEELEHRGE--- 66 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157 EI K+ G + + + + +L L + K+ TI F I+++F L A++ F Sbjct: 67 LDEIVKVTG-FSREFLLHERKRILDEFLNSNS--KIMTIDKFFAQILRKFSLYASLMPDF 123 Query: 158 AIADEEQSKKLIEE--------AKKSTLASIMLDNNEELKKAF 192 + KL+ KK+TL ++ L + + L F Sbjct: 124 TTMSSQHELKLLSRFLKEVSVAGKKNTLITLSLQSKKRLGDIF 166 >gi|189218845|ref|YP_001939486.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Methylacidiphilum infernorum V4] gi|189185703|gb|ACD82888.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Methylacidiphilum infernorum V4] Length = 1055 Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 8/150 (5%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 TR V A+AG+GKTH LV+R L LLL P +LL +T T+ A+ E+ R+ +S Sbjct: 9 TRRLVVVASAGAGKTHQLVERALDLLLEGVAPHSLLIITFTRKASQEIVDRI------FS 62 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 L+ +L+++ K+ S+A L T++E L+ TI +F +++ P + Sbjct: 63 TLAQRVLASK-EKVDPSPEESLLKSRAYRCLQTLIEDLPFLRFGTIDSFLYHLLRYIPPD 121 Query: 151 ANIT-SHFAIADEEQSKKLIEEAKKSTLAS 179 T + F++ D++ K L +E + L + Sbjct: 122 KKPTFAPFSLLDDKGKKSLQQEIVRRILTA 151 >gi|256958610|ref|ZP_05562781.1| UvrD/REP helicase [Enterococcus faecalis DS5] gi|256949106|gb|EEU65738.1| UvrD/REP helicase [Enterococcus faecalis DS5] Length = 1264 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206 +I F + DE ++ L E+ + +N EE FY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177 Query: 207 LISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 --DDGLTN-----LIFSFYEF 191 >gi|256762121|ref|ZP_05502701.1| exonuclease RexA [Enterococcus faecalis T3] gi|257086468|ref|ZP_05580829.1| UvrD/REP helicase [Enterococcus faecalis D6] gi|256683372|gb|EEU23067.1| exonuclease RexA [Enterococcus faecalis T3] gi|256994498|gb|EEU81800.1| UvrD/REP helicase [Enterococcus faecalis D6] gi|315028070|gb|EFT40002.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2137] Length = 1264 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206 +I F + DE ++ L E+ + +N EE FY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177 Query: 207 LISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 --DDGLTN-----LIFSFYEF 191 >gi|329576396|gb|EGG57909.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1467] Length = 1264 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206 +I F + DE ++ L E+ + +N EE FY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177 Query: 207 LISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 --DDGLTN-----LIFSFYEF 191 >gi|257418942|ref|ZP_05595936.1| UvrD/REP helicase [Enterococcus faecalis T11] gi|257160770|gb|EEU90730.1| UvrD/REP helicase [Enterococcus faecalis T11] Length = 1264 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206 +I F + DE ++ L E+ + +N EE FY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177 Query: 207 LISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 --DDGLTN-----LIFSFYEF 191 >gi|307268773|ref|ZP_07550141.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4248] gi|306514901|gb|EFM83448.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4248] Length = 1264 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206 +I F + DE ++ L E+ + +N EE FY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177 Query: 207 LISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 --DDGLTN-----LIFSFYEF 191 >gi|301301162|ref|ZP_07207319.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851291|gb|EFK79018.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius ACS-116-V-Col5a] Length = 1248 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 19/152 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T ++Q D ++ V+A+AGSGKT +LV+RV+ + LL +T T+AAA EM Sbjct: 8 TPAQQKAIEDTGKNILVAASAGSGKTRVLVERVINKIKQGVSIDELLVVTFTEAAAKEMK 67 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ L E+ +A+ S+ K R+L T L + T+HAF Sbjct: 68 ERI------QIALRKELSTAD-----------SEEEKRRYL--TQLSKLNVANISTLHAF 108 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 C I++Q+ N+ F + E+ L++E Sbjct: 109 CLQIIKQYYYVINLDPMFRMLTEDTEVALLQE 140 >gi|163790443|ref|ZP_02184874.1| exonuclease RexA [Carnobacterium sp. AT7] gi|159874347|gb|EDP68420.1| exonuclease RexA [Carnobacterium sp. AT7] Length = 1267 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 23/139 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LVQRV+ + A + +L +T+T+AAA EM R+ Sbjct: 31 VSASAGSGKTTVLVQRVIEKIKAGTNVDEMLIVTYTEAAAKEMKARIQ------------ 78 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLL--ITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 IQ ++SDM RHL +T++ + T+HAFC +++++ N+ Sbjct: 79 ------VAIQESVTSESDMELKRHLTRQVTLINQAS---ISTLHAFCLQVIRRYYYLINL 129 Query: 154 TSHFAIADEEQSKKLIEEA 172 F + +E L++E+ Sbjct: 130 DPIFRLLTDETEILLLKES 148 >gi|257078036|ref|ZP_05572397.1| UvrD/REP helicase [Enterococcus faecalis JH1] gi|294780984|ref|ZP_06746336.1| ATP-dependent nuclease subunit A [Enterococcus faecalis PC1.1] gi|256986066|gb|EEU73368.1| UvrD/REP helicase [Enterococcus faecalis JH1] gi|294451930|gb|EFG20380.1| ATP-dependent nuclease subunit A [Enterococcus faecalis PC1.1] gi|315031591|gb|EFT43523.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0017] gi|315034967|gb|EFT46899.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0027] gi|323480352|gb|ADX79791.1| recombination helicase AddA [Enterococcus faecalis 62] Length = 1264 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206 +I F + DE ++ L E+ + +N EE FY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177 Query: 207 LISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 --DDGLTN-----LIFSFYEF 191 >gi|251778187|ref|ZP_04821107.1| ATP-dependent nuclease subunit A [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082502|gb|EES48392.1| ATP-dependent nuclease subunit A [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 1244 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 28/155 (18%) Query: 17 ISQTK-SEQLLASDPTRSA--WVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 +S TK +E+ L++ TR V+A AGSGKT +LV+R+++++ +P LL +T Sbjct: 1 MSGTKWTEEQLSAITTRDCNLLVAAAAGSGKTAVLVERIIKIITNEENPIDIDKLLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAAEM R+ I+ KK +++ MSK +T+L Sbjct: 61 TSAAAAEMRERIANAIS-------------------KKLDETPMSKNLQKQLTLLNRSN- 100 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 + TIH+FC +++ + ++ F I D+ + Sbjct: 101 --IMTIHSFCLGVIKNNFHKIDLDPSFRICDQTEG 133 >gi|90962576|ref|YP_536492.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius UCC118] gi|122448460|sp|Q1WRS0|ADDA_LACS1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|90821770|gb|ABE00409.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius UCC118] Length = 1248 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 19/152 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T ++Q D ++ V+A+AGSGKT +LV+RV+ + LL +T T+AAA EM Sbjct: 8 TPAQQKAIEDTGKNILVAASAGSGKTRVLVERVINKIKQGVSIDELLVVTFTEAAAKEMK 67 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ L E+ +A+ S+ K R+L T L + T+HAF Sbjct: 68 ERI------QIALRKELSTAD-----------SEEEKRRYL--TQLSKLNVANISTLHAF 108 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 C I++Q+ N+ F + E+ L++E Sbjct: 109 CLQIIKQYYYVINLDPMFRMLTEDTEVALLQE 140 >gi|307288582|ref|ZP_07568566.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0109] gi|306500489|gb|EFM69822.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0109] Length = 1264 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206 +I F + DE ++ L E+ + +N EE FY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177 Query: 207 LISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 --DDGLTN-----LIFSFYEF 191 >gi|300215188|gb|ADJ79604.1| ATP-dependent helicase/nuclease subunit A (ATP-dependent helicase/nuclease addA) [Lactobacillus salivarius CECT 5713] Length = 1248 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 19/152 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T ++Q D ++ V+A+AGSGKT +LV+RV+ + LL +T T+AAA EM Sbjct: 8 TPAQQKAIEDTGKNILVAASAGSGKTRVLVERVINKIKQGVSIDELLVVTFTEAAAKEMK 67 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ L E+ +A+ S+ K R+L T L + T+HAF Sbjct: 68 ERI------QIALRKELSTAD-----------SEEEKRRYL--TQLSKLNVANISTLHAF 108 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 C I++Q+ N+ F + E+ L++E Sbjct: 109 CLQIIKQYYYVINLDPMFRMLTEDTEVALLQE 140 >gi|256618697|ref|ZP_05475543.1| UvrD/REP helicase [Enterococcus faecalis ATCC 4200] gi|257089525|ref|ZP_05583886.1| exonuclease rexA [Enterococcus faecalis CH188] gi|256598224|gb|EEU17400.1| UvrD/REP helicase [Enterococcus faecalis ATCC 4200] gi|256998337|gb|EEU84857.1| exonuclease rexA [Enterococcus faecalis CH188] gi|315577474|gb|EFU89665.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0630] Length = 1264 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206 +I F + DE ++ L E+ + +N EE FY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177 Query: 207 LISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 --DDGLTN-----LIFSFYEF 191 >gi|257415727|ref|ZP_05592721.1| UvrD/REP helicase [Enterococcus faecalis AR01/DG] gi|257157555|gb|EEU87515.1| UvrD/REP helicase [Enterococcus faecalis ARO1/DG] Length = 1264 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206 +I F + DE ++ L E+ + +N EE FY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177 Query: 207 LISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 --DDGLTN-----LIFSFYEF 191 >gi|227891362|ref|ZP_04009167.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus salivarius ATCC 11741] gi|227866940|gb|EEJ74361.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus salivarius ATCC 11741] Length = 1253 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 19/152 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T ++Q D ++ V+A+AGSGKT +LV+RV+ + LL +T T+AAA EM Sbjct: 13 TPAQQKAIEDTGKNILVAASAGSGKTRVLVERVINKIKQGVSIDELLVVTFTEAAAKEMK 72 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ L E+ +A+ S+ K R+L T L + T+HAF Sbjct: 73 ERI------QIALRKELSTAD-----------SEEEKRRYL--TQLSKLNVANISTLHAF 113 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 C I++Q+ N+ F + E+ L++E Sbjct: 114 CLQIIKQYYYVINLDPMFRMLTEDTEVALLQE 145 >gi|312899588|ref|ZP_07758914.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0470] gi|311293267|gb|EFQ71823.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0470] Length = 1264 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206 +I F + DE ++ L E+ + +N EE FY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177 Query: 207 LISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 --DDGLTN-----LIFSFYEF 191 >gi|255976207|ref|ZP_05426793.1| exonuclease RexA [Enterococcus faecalis T2] gi|307278851|ref|ZP_07559914.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0860] gi|255969079|gb|EET99701.1| exonuclease RexA [Enterococcus faecalis T2] gi|306504522|gb|EFM73729.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0860] Length = 1264 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206 +I F + DE ++ L E+ + +N EE FY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177 Query: 207 LISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 --DDGLTN-----LIFSFYEF 191 >gi|328552685|gb|AEB23177.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus amyloliquefaciens TA208] Length = 1234 Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 33/187 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R++R + A P LL +T T A+AAEM HR+ E Sbjct: 24 RDILVAAAAGSGKTAVLVERMIRKITAEEEPVDVDRLLVVTFTNASAAEMKHRIAE---- 79 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K K P + + LL + T+H+FC +++++ Sbjct: 80 -----------ALEKELAKNPGSLHIRRQLSLL-------NRASISTLHSFCLQVLKKYY 121 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F +AD+ + + L +E L + D + +AF+E+++ +D D+ Sbjct: 122 YMIDLDPGFRMADQTEGELLGDE----VLDELFEDEYAKGNQAFFELVDRYTTDRHDLDL 177 Query: 205 ETLISDI 211 + L+ + Sbjct: 178 QDLVKRV 184 >gi|315165524|gb|EFU09541.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1302] Length = 1271 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 31 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 85 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + D + RH I P + T+HAFC ++++F Sbjct: 86 -------------VALQKAMNEEQDPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 131 Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206 +I F + DE ++ L E+ + +N EE FY++ SND Sbjct: 132 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 184 Query: 207 LISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 185 --DDGLTN-----LIFSFYEF 198 >gi|254520364|ref|ZP_05132420.1| recombination helicase AddA [Clostridium sp. 7_2_43FAA] gi|226914113|gb|EEH99314.1| recombination helicase AddA [Clostridium sp. 7_2_43FAA] Length = 1251 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 28/155 (18%) Query: 17 ISQTK-SEQLLASDPTRSA--WVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 +S TK +E L + TR V+A AGSGKT +LV+R++R++ +P LL +T Sbjct: 1 MSDTKWTEDQLKAITTRGCNLLVAAAAGSGKTAVLVERIIRIITNENNPVDIDRLLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAAEM R+ +A I++ PN SK +T+L Sbjct: 61 TSAAAAEMRERI---------------AAAISRSLEANPN----SKVLQRQLTLLSRAN- 100 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 + T+H+FC +++ + ++ F IADE ++ Sbjct: 101 --ITTMHSFCLDVIKNYYHVIDLDPTFRIADETEN 133 >gi|160934431|ref|ZP_02081818.1| hypothetical protein CLOLEP_03304 [Clostridium leptum DSM 753] gi|156867104|gb|EDO60476.1| hypothetical protein CLOLEP_03304 [Clostridium leptum DSM 753] Length = 1179 Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 25/164 (15%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 T+S++ S S VSA AGSGKT +LVQRV+ L P LL +T T AAAA Sbjct: 7 TESQRWAISARNGSLLVSAAAGSGKTAVLVQRVIERLTDPERPCDADRLLIVTFTNAAAA 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ SA I ++ P + + + + LL + TI Sbjct: 67 EMKERI---------------SAAIGELLQADPANAQLQRQQILL-------NRAHISTI 104 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 H+FC ++++ + +I+ F I+D + L +EA + + Sbjct: 105 HSFCNELVRENFYKLDISPDFRISDSAEMTLLRQEAMDEVMEEL 148 >gi|153812830|ref|ZP_01965498.1| hypothetical protein RUMOBE_03237 [Ruminococcus obeum ATCC 29174] gi|149831042|gb|EDM86131.1| hypothetical protein RUMOBE_03237 [Ruminococcus obeum ATCC 29174] Length = 1233 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 25/166 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 ++ T+ +Q + S R+ VSA AGSGKT +LVQR+L ++ P LL +T T+A Sbjct: 3 VTWTEEQQKVISLRDRNILVSAAAGSGKTAVLVQRILSKIMDTERPVDIDRLLIMTFTRA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ SA I +I P+ + + L+ ++ Sbjct: 63 AAGEMKERI---------------SAAIDQILYDNPDNEHLQRQASLI-------HNAQI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 TI FC I++ + ++ + A+E + K L E+ K L + Sbjct: 101 TTIDGFCAYIIRNYFHMIDLDPGYRTAEEGELKLLREDVMKEVLEA 146 >gi|118602136|ref|YP_903351.1| UvrD/REP helicase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567075|gb|ABL01880.1| UvrD/REP helicase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 1053 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 28/173 (16%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 QT+ Q A D ++S V A AGSGKT +L QR L+LL +A P +++ +T TK A +E+ Sbjct: 4 QTQRRQ--ALDVSQSFIVQAPAGSGKTELLTQRYLKLLSVSASPESVIAMTFTKKAVSEL 61 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL------- 131 + RV+E + QG +P +S L + +LE L Sbjct: 62 TTRVIE---------------SLKLAQGNRPKESYKQTTYDLALKVLEKSKTLDWQLLNM 106 Query: 132 ----KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 K+ TI I ++P + + IA + +A K TL +I Sbjct: 107 YERFKILTIDGLSGLIASRYPSKNQLVPKQIIAQNCVRNDIYLKAAKQTLLAI 159 >gi|167751208|ref|ZP_02423335.1| hypothetical protein EUBSIR_02194 [Eubacterium siraeum DSM 15702] gi|167655715|gb|EDR99844.1| hypothetical protein EUBSIR_02194 [Eubacterium siraeum DSM 15702] Length = 1235 Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 90/179 (50%), Gaps = 23/179 (12%) Query: 34 AWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A VSA AGSGKT +L QRV+RL+ N PS ++ +T T+ AA E+ R+ ++ Sbjct: 18 AIVSAGAGSGKTAVLTQRVVRLICDKNENIDPSKIVVVTFTEKAANELKARLDALMR--Q 75 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-FPL 149 +S+ + SA++ ++ + + + KAR + TI +FC +++++ L Sbjct: 76 RISEAVSSADVRFLRNQ---RMKLRKAR--------------ISTISSFCFSLLRENIDL 118 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208 +I++ F++ DE +SK L E+ L + ++ + E +D + +I Sbjct: 119 VTDISAGFSLIDETRSKALKEDILSDVLEDFYANGDKADRDVIVENYVAKDDRRLRDII 177 >gi|253827592|ref|ZP_04870477.1| putative helicase [Helicobacter canadensis MIT 98-5491] gi|253510998|gb|EES89657.1| putative helicase [Helicobacter canadensis MIT 98-5491] Length = 919 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 8/131 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 ++A+AGSGKT+ LV R L LL A PS +L LT TK AA EM R+++ I ++ Sbjct: 8 LNASAGSGKTYRLVLRYLELLFLGAKPSEILTLTFTKKAAKEMEERIVKSIQEIYQRKND 67 Query: 96 ---ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 I E I + + ++K + + LK+ TI +F + I++ F Sbjct: 68 REYIKKLEFISINDLEGIEQKITKIYYEFLR-----EDLKITTIDSFFQRILKSFCWYVG 122 Query: 153 ITSHFAIADEE 163 + ++F I +E+ Sbjct: 123 VENNFEIQNED 133 >gi|163857867|ref|YP_001632165.1| putative nuclease/helicase [Bordetella petrii DSM 12804] gi|163261595|emb|CAP43897.1| putative nuclease/helicase [Bordetella petrii] Length = 1152 Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 10/142 (7%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP S V A AGSGKT +L R+L LL P ++ +T T+ AA+EM RVL Sbjct: 17 ALDPASSFLVQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAASEMHARVL--- 73 Query: 87 TAWSHLSDEILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 L D T+ G++ ++ + + L +L+ P L ++TI +FC + Sbjct: 74 ---GKLRDGSGPMPATE-HGQRSWQLARAALERNDALGWKLLQHPARLSIRTIDSFCAGL 129 Query: 144 MQQFPLEANITSHFAIADEEQS 165 ++ P + + IAD+ Q+ Sbjct: 130 VRGMPWLSELGGMPDIADDAQA 151 >gi|27467582|ref|NP_764219.1| ATP-dependent nuclease subunit A [Staphylococcus epidermidis ATCC 12228] gi|81842983|sp|Q8CPT9|ADDA_STAES RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|27315126|gb|AAO04261.1|AE016746_51 ATP-dependent nuclease subunit A [Staphylococcus epidermidis ATCC 12228] Length = 1224 Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R++ R+L + LL +T T +A EM HRV Sbjct: 34 VAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSAREMKHRV------------ 81 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I + K PN + R I I + ++ T+H+FC ++QQ +I Sbjct: 82 ---DKRIQEASFKDPNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLDID 131 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 HF + E ++ L+E+ T+ ++ + ++L F E+ E +S+D + + Sbjct: 132 PHFRTSSEAENILLLEQ----TIDDVLEQHYDKLDPHFIELTEQLSSDRNDDQF------ 181 Query: 214 NRTALKLIFFF 224 R+ +K ++FF Sbjct: 182 -RSIIKQLYFF 191 >gi|218510905|ref|ZP_03508783.1| UvrD/REP helicase [Rhizobium etli Brasil 5] Length = 318 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 17/139 (12%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT--AW 89 RS V A AGSGKT ++ R+ +L P + +T T+ AA+E+ RV + +T A Sbjct: 23 RSILVEAGAGSGKTAVMAGRIAVMLAQGVAPRAIAAVTFTELAASELLSRVRDFVTDLAA 82 Query: 90 SHLSDEI---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 H++ E+ L +++ Q R L+ + TIH FC+ +++ Sbjct: 83 GHIAPELRVGLPDGLSQAQ------------RDNLVVASAAIDEITCSTIHGFCQRLIKP 130 Query: 147 FPLEANITSHFAIADEEQS 165 +P EA+I + D QS Sbjct: 131 YPAEADIDPGATVMDRNQS 149 >gi|329730541|gb|EGG66929.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus epidermidis VCU144] Length = 1218 Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R++ R+L + LL +T T +A EM HRV Sbjct: 28 VAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSAREMKHRV------------ 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I + K PN + R I I + ++ T+H+FC ++QQ +I Sbjct: 76 ---DKRIQEASFKDPNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLDID 125 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 HF + E ++ L+E+ T+ ++ + ++L F E+ E +S+D + + Sbjct: 126 PHFRTSSEAENILLLEQ----TIDDVLEQHYDKLDPHFIELTEQLSSDRNDDQF------ 175 Query: 214 NRTALKLIFFF 224 R+ +K ++FF Sbjct: 176 -RSIIKQLYFF 185 >gi|57866488|ref|YP_188146.1| exonuclease RexA [Staphylococcus epidermidis RP62A] gi|81675092|sp|Q5HQJ4|ADDA_STAEQ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|57637146|gb|AAW53934.1| exonuclease RexA [Staphylococcus epidermidis RP62A] Length = 1218 Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R++ R+L + LL +T T +A EM HRV Sbjct: 28 VAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSAREMKHRV------------ 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I + K PN + R I I + ++ T+H+FC ++QQ +I Sbjct: 76 ---DKRIQEASFKDPNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLDID 125 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 HF + E ++ L+E+ T+ ++ + ++L F E+ E +S+D + + Sbjct: 126 PHFRTSSEAENILLLEQ----TIDDVLEQHYDKLDPHFIELTEQLSSDRNDDQF------ 175 Query: 214 NRTALKLIFFF 224 R+ +K ++FF Sbjct: 176 -RSIIKQLYFF 185 >gi|330837379|ref|YP_004412020.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374] gi|329749282|gb|AEC02638.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374] Length = 1218 Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 29/171 (16%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 Q A D + VSA AGSGKT +L R +RLL+ AH +L LT T+ AAAEM R+ Sbjct: 33 QRRAVDCDSNCVVSAGAGSGKTTVLTYRFIRLLIEGKAHADQILTLTFTRKAAAEMHERI 92 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 +++ S D ++++E+ + P ++ T+ +FC A Sbjct: 93 HALVS--SLRDDPLMASELARF----PQA--------------------QISTLDSFCSA 126 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 I++ + IT F+I D+ ++ S L + D L FY Sbjct: 127 IVRSDCIRYGITGDFSIDDDATTR--FASVVASRLLADAQDEGARLLSVFY 175 >gi|182417613|ref|ZP_02948934.1| recombination helicase AddA [Clostridium butyricum 5521] gi|237669499|ref|ZP_04529479.1| ATP-dependent nuclease subunit A [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378532|gb|EDT76062.1| recombination helicase AddA [Clostridium butyricum 5521] gi|237654943|gb|EEP52503.1| ATP-dependent nuclease subunit A [Clostridium butyricum E4 str. BoNT E BL5262] Length = 1252 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 28/155 (18%) Query: 17 ISQTK-SEQLLASDPTRSA--WVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 + +TK +++ L++ TR+ V+A AGSGKT +LV+R++R++ +P LL +T Sbjct: 1 MGETKWTDEQLSAIKTRNCNLLVAAAAGSGKTAVLVERIIRIITNKDNPVDIDKLLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAAEM R+ +A I+K K+P ++ K LL Sbjct: 61 TNAAAAEMRERI---------------AAAISKALDKEPTSKNLQKQLTLL-------NR 98 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 + T+H+FC +++ + ++ F I D+ + Sbjct: 99 ANITTMHSFCLDVIKNNFHKIDLDPSFRIGDQTEG 133 >gi|78776291|ref|YP_392606.1| UvrD/REP helicase [Sulfurimonas denitrificans DSM 1251] gi|78496831|gb|ABB43371.1| UvrD/REP helicase [Sulfurimonas denitrificans DSM 1251] Length = 903 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 18/165 (10%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS--DE 95 A+AGSGKT +LV R L LL A S +L LT T AA+EM R++ + H DE Sbjct: 10 ASAGSGKTFMLVVRYLSLLFMGAKASRILALTFTNKAASEMQERIIATLEELEHRGELDE 69 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 IL I+ N+ + +L L + K+ TI +F I+++F L A++ Sbjct: 70 ILRVTGLSIEYLLENR------QRVLDEFLNSHT--KIMTIDSFFTKILRKFSLYASLMP 121 Query: 156 HFAIADEEQSKKLIEE--------AKKSTLASIMLDNNEELKKAF 192 F+ + KL+ +K L S+ L +N+ L F Sbjct: 122 DFSTFSSQHELKLLSRFLKEVSITNQKERLISLWLSSNKRLSDIF 166 >gi|282875534|ref|ZP_06284405.1| ATP-dependent nuclease subunit A [Staphylococcus epidermidis SK135] gi|281295561|gb|EFA88084.1| ATP-dependent nuclease subunit A [Staphylococcus epidermidis SK135] Length = 1218 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R++ R+L + LL +T T +A EM HRV Sbjct: 28 VAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSAREMKHRV------------ 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I + K PN + R I I + ++ T+H+FC ++QQ +I Sbjct: 76 ---DKRIQEASFKDPNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLDID 125 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 HF + E ++ L+E+ T+ ++ + ++L F E+ E +S+D + + Sbjct: 126 PHFRTSSEAENILLLEQ----TIDDVLEQHYDKLDPHFIELTEQLSSDRNDDQF------ 175 Query: 214 NRTALKLIFFF 224 R+ +K ++FF Sbjct: 176 -RSIIKQLYFF 185 >gi|251810340|ref|ZP_04824813.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis BCM-HMP0060] gi|251806148|gb|EES58805.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis BCM-HMP0060] Length = 1224 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R++ R+L + LL +T T +A EM HRV Sbjct: 34 VAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSAREMKHRV------------ 81 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I + K PN + R I I + ++ T+H+FC ++QQ +I Sbjct: 82 ---DKRIQEASFKDPNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLDID 131 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 HF + E ++ L+E+ T+ ++ + ++L F E+ E +S+D + + Sbjct: 132 PHFRTSSEAENILLLEQ----TIDDVLEQHYDKLDPHFIELTEQLSSDRNDDQF------ 181 Query: 214 NRTALKLIFFF 224 R+ +K ++FF Sbjct: 182 -RSIIKQLYFF 191 >gi|291165683|gb|EFE27731.1| ATP-dependent nuclease subunit A [Filifactor alocis ATCC 35896] Length = 1224 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 90/182 (49%), Gaps = 26/182 (14%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 +S T + + + ++ VSA AGSGKT +LV+R+LR++ + +L +T T AAA Sbjct: 10 VSYTNEQNAVIYEKNKNILVSAAAGSGKTAVLVERILRIVEEERVDINRMLIVTFTNAAA 69 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ S K G+K + D + + +I I E + T Sbjct: 70 GEMRERI---------------SKAFAKRLGQKGH--DTAFLQDQMIKISEA----SIST 108 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++QF A+I+ FA+A E L K +L ++ ++ E + F+++ Sbjct: 109 LHSFCIDVLRQFFHAADISPSFAMATEANVSVL----KAKSLEEVLEESYERGDETFFQL 164 Query: 196 LE 197 ++ Sbjct: 165 VD 166 >gi|91776104|ref|YP_545860.1| DNA helicase/exodeoxyribonuclease V, subunit A [Methylobacillus flagellatus KT] gi|91710091|gb|ABE50019.1| DNA helicase/exodeoxyribonuclease V, subunit A [Methylobacillus flagellatus KT] Length = 1129 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 53/182 (29%), Positives = 90/182 (49%), Gaps = 10/182 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AG+GKT +L QR LRLL + P ++ +T T AAAEM R+L+ + + S Sbjct: 28 VEAPAGAGKTELLTQRFLRLLTTVSAPEQIIAITFTNKAAAEMRARILDSLLMAASGSP- 86 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + K Q + K + A L +L+ P L++ TI + + +Q PL + S Sbjct: 87 --PPQAHKQQTFRLGKEALRHADSLGWELLDHPSRLRIFTIDSLSGHLSRQMPLLSRFGS 144 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISND-EDIETLISDIIS 213 A++++ + + A + TLA L + E + +A L + ND + + L+ D++ Sbjct: 145 QPAVSEDASAHYRL--AAERTLA---LVDEESMGEAVRLALRYVDNDVQKLTGLLVDMLG 199 Query: 214 NR 215 R Sbjct: 200 KR 201 >gi|242242257|ref|ZP_04796702.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis W23144] gi|242234273|gb|EES36585.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis W23144] Length = 1218 Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R++ R+L + LL +T T +A EM HRV Sbjct: 28 VAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSAREMKHRV------------ 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I + K PN + R I I + ++ T+H+FC ++QQ +I Sbjct: 76 ---DIRIQEASFKDPNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLDID 125 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 HF + E ++ L+E+ T+ ++ + ++L F E+ E +S+D + + Sbjct: 126 PHFRTSSEAENILLLEQ----TIDDVLEQHYDKLDPHFIELTEQLSSDRNDDQF------ 175 Query: 214 NRTALKLIFFF 224 R+ +K ++FF Sbjct: 176 -RSIIKQLYFF 185 >gi|91215425|ref|ZP_01252396.1| ATP-dependent helicase [Psychroflexus torquis ATCC 700755] gi|91186377|gb|EAS72749.1| ATP-dependent helicase [Psychroflexus torquis ATCC 700755] Length = 1045 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 27/167 (16%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSH-- 91 +A+AGSGKT L +R L LLL++ S+ +L +T T A EM R+LE + ++S Sbjct: 11 NASAGSGKTFKLAERYLNLLLSSPQNSSFQNILAITFTNKAVGEMKSRILEYLVSFSEGK 70 Query: 92 --LSDEIL------SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 L D+ + S +TK Q +K K++ +L IL +V TI AF I Sbjct: 71 TSLEDDPMLLLIHKSTGLTKEQIQK-------KSKRVLEAILNNYAAFEVSTIDAFTHRI 123 Query: 144 MQQFPLEANITSHFAI-ADEEQ-----SKKLIEEA-KKSTLASIMLD 183 ++ F + ++ +F I D +Q ++++E+A K+ L +++D Sbjct: 124 IRTFAKDLGLSMNFDIEMDTKQVLELAVERVVEKAGKEEELTDVLID 170 >gi|255590468|ref|XP_002535279.1| conserved hypothetical protein [Ricinus communis] gi|223523578|gb|EEF27105.1| conserved hypothetical protein [Ricinus communis] Length = 436 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 26/190 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AG+GKT +L QR L+LL P ++ +T T AAAEM RVL+ L D Sbjct: 25 VEAPAGAGKTELLTQRYLKLLAVVNEPEEIVAITFTNKAAAEMRSRVLQ------SLQD- 77 Query: 96 ILSAEITKIQGKKPNKSD--------MSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 +A+ I KP+K ++++ L +L PG L++ TI + + +Q Sbjct: 78 --AADAIPID--KPHKQTTRELALHALARSAELGWDLLAQPGRLRINTIDSLSSNLARQM 133 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE-- 205 PL + + A++++ L EA + TLA ML+ +E A E L +++ + Sbjct: 134 PLMSRFGAQPAVSEDVGVHYL--EAARRTLA--MLE-DEGGNGAVTEALRYLDNDTVRLS 188 Query: 206 TLISDIISNR 215 L++++++ R Sbjct: 189 NLLAEMLARR 198 >gi|86131067|ref|ZP_01049666.1| UvrD/REP helicase [Dokdonia donghaensis MED134] gi|85818478|gb|EAQ39638.1| UvrD/REP helicase [Dokdonia donghaensis MED134] Length = 1045 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 29/165 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL 92 ++A+AGSGKT+ LV++ + LL + P+ LL +T T A AEM +RVLE + A Sbjct: 10 LNASAGSGKTYSLVKQYITTLLKSKDPNKFRHLLAITFTNKAVAEMKNRVLETLKAIGDY 69 Query: 93 SDEILSAEITKIQGKKPNKSD-------------MSKARHLLITILETPGGLKVQTIHAF 139 QG KP+ D + K++ +L IL + TI Sbjct: 70 K-----------QGDKPDMLDDLASASNLPVDEVVHKSKEILNRILHNYAAFDIVTIDTL 118 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 I++ F + NI+S F ++ ++ K L +A + +A + +D+ Sbjct: 119 THRIIRTFAKDLNISSSFEVSLDQ--KTLSAQAVDALVAKVGVDD 161 >gi|212696888|ref|ZP_03305016.1| hypothetical protein ANHYDRO_01451 [Anaerococcus hydrogenalis DSM 7454] gi|212676178|gb|EEB35785.1| hypothetical protein ANHYDRO_01451 [Anaerococcus hydrogenalis DSM 7454] Length = 1021 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 23/132 (17%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89 ++ VSA AGSGKT +LV RV+ L++ P ++ +T T A+ EM R+ E ++ Sbjct: 18 NKNIIVSAAAGSGKTRVLVDRVVSLMIEEKIPIKNMIIVTFTNKASVEMKDRIREKLSEL 77 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-FP 148 L DE + + K Q K N + ++T+H+FC ++++ F Sbjct: 78 --LDDEKIDSSFVKKQIKAINDA-------------------FIKTLHSFCADMLRENFY 116 Query: 149 LEANITSHFAIA 160 L N++ F IA Sbjct: 117 LSDNLSPSFKIA 128 >gi|238854633|ref|ZP_04644963.1| recombination helicase AddA [Lactobacillus jensenii 269-3] gi|260664424|ref|ZP_05865276.1| recombination helicase AddA [Lactobacillus jensenii SJ-7A-US] gi|282932976|ref|ZP_06338373.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1] gi|238832423|gb|EEQ24730.1| recombination helicase AddA [Lactobacillus jensenii 269-3] gi|260561489|gb|EEX27461.1| recombination helicase AddA [Lactobacillus jensenii SJ-7A-US] gi|281303011|gb|EFA95216.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1] Length = 1186 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 35/185 (18%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +++ TK ++ + + VSA+AGSGKT +L +RV++L+ LL +T TKAAA Sbjct: 1 MVNYTKEQEAAINTREKDILVSASAGSGKTMVLAERVIKLIKDGTSLDNLLVITFTKAAA 60 Query: 76 AEMSHRVLEIITA------WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 EM R+ ++ L E+L AE+ I Sbjct: 61 NEMKERIKRVLNEEIAQNNSRELKRELLRAEVANI------------------------- 95 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 TI +FC ++ +F + F++ +E L++E L N + Sbjct: 96 ----STIDSFCLDVVHRFYYVIGLDPSFSVLTDETQAALLKEKALRELEKKAFSNQDNPY 151 Query: 190 KAFYE 194 + FY+ Sbjct: 152 RIFYD 156 >gi|313472179|ref|ZP_07812671.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 1153] gi|313449090|gb|EEQ68552.2| ATP-dependent nuclease subunit A [Lactobacillus jensenii 1153] Length = 1173 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 35/185 (18%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +++ TK ++ + + VSA+AGSGKT +L +RV++L+ LL +T TKAAA Sbjct: 1 MVNYTKEQEAAINTREKDILVSASAGSGKTMVLAERVIKLIKDGTSLDNLLVITFTKAAA 60 Query: 76 AEMSHRVLEIITA------WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 EM R+ ++ L E+L AE+ I Sbjct: 61 NEMKERIKRVLNEEIAQNNSRELKRELLRAEVANI------------------------- 95 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 TI +FC ++ +F + F++ +E L++E L N + Sbjct: 96 ----STIDSFCLDVVHRFYYVIGLDPSFSVLTDETQAALLKEKALRELEKKAFSNQDNPY 151 Query: 190 KAFYE 194 + FY+ Sbjct: 152 RIFYD 156 >gi|313896167|ref|ZP_07829720.1| ATP-dependent helicase/nuclease subunit A family protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312974966|gb|EFR40428.1| ATP-dependent helicase/nuclease subunit A family protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 270 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 24/136 (17%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R++ ++ +L LT TKAAAAEM R+ + Sbjct: 24 VAAAAGSGKTRVLVERIIAQVRSGELSLDRVLVLTFTKAAAAEMRERI-----------E 72 Query: 95 EILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 L+AEI +I ++ SD + + +L+T G + T H+FC+ I+Q + Sbjct: 73 TALNAEIDRIAEERAATSDADEEIAALERQRILLT------GADISTFHSFCQRILQTYI 126 Query: 149 LEANITSHFAIADEEQ 164 I ++ +A E++ Sbjct: 127 EATQIPPNYRLASEQE 142 >gi|317132410|ref|YP_004091724.1| recombination helicase AddA [Ethanoligenens harbinense YUAN-3] gi|315470389|gb|ADU26993.1| recombination helicase AddA [Ethanoligenens harbinense YUAN-3] Length = 1186 Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 25/137 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 VSA AGSGKT +LV+RV+ + HP LL +T T AAAAEM R Sbjct: 23 VSAAAGSGKTAVLVERVVGRMTDPNHPCDADRLLVVTFTNAAAAEMRAR----------- 71 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 L+A + + + P +++ + + LL + TIHAFC +++ + + Sbjct: 72 ----LAARLHTLAVEHPEDANLRRQQILL-------QHAHISTIHAFCLELLRAHFEKLD 120 Query: 153 ITSHFAIADEEQSKKLI 169 I F IADE +++ L+ Sbjct: 121 IPPDFRIADENEARVLL 137 >gi|229820063|ref|YP_002881589.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333] gi|229565976|gb|ACQ79827.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333] Length = 1110 Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 19/164 (11%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLE 84 +A+D + S +V A AGSGKT LV+RV L++ + P + + +T T+ A AE+ R Sbjct: 12 IATDTSSSLFVEAGAGSGKTRSLVERVGTLVMDDGVPLAQIAAITFTEKAGAELRDR--- 68 Query: 85 IITAWSHLSDEILSAEITKI-QGKKPNKSDMSKARHLLIT-ILETPGGLKVQTIHAFCEA 142 L E ++ + +P AR L LE G + T+H+F + Sbjct: 69 ------------LRGEFERVWRRARPGGPQEDPARSSLAERALEDLDGAAIGTLHSFAQR 116 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 I+ + P+EA + ++DE S +E + S L +LD+ E Sbjct: 117 ILARHPVEAGLPPLIEVSDEVASGVAFDE-RWSVLQRELLDDEE 159 >gi|257869454|ref|ZP_05649107.1| UvrD/REP helicase [Enterococcus gallinarum EG2] gi|257803618|gb|EEV32440.1| UvrD/REP helicase [Enterococcus gallinarum EG2] Length = 1226 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 26/179 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLSD 94 VSA+AGSGKT +LV+RV+ L A + LL +T T+AAA EM R+ + + TA + S Sbjct: 30 VSASAGSGKTTVLVRRVIEKLKAGSQIDELLIVTFTEAAAREMKERIQVALQTAINQESQ 89 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E K +H + + P + T+HAFC ++++F ++ Sbjct: 90 E-------------------QKRQHFVRQLQLLPTA-NISTLHAFCLTVIRRFYYLIDLD 129 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDII 212 F + +E L++E + L + N+E AF+ + E ++D ET + D+I Sbjct: 130 PGFRMLTDETEILLLKEEIWTQLRDAHYEANDE---AFFRLTENFASDRSDET-VGDLI 184 >gi|160946300|ref|ZP_02093509.1| hypothetical protein PEPMIC_00260 [Parvimonas micra ATCC 33270] gi|158447416|gb|EDP24411.1| hypothetical protein PEPMIC_00260 [Parvimonas micra ATCC 33270] Length = 1261 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 25/170 (14%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 TK ++ + + VSA AGSGKT +L++R++ L+L +P + LL +T TK AA+ Sbjct: 7 TKEQRQVIDSRNTNLLVSAAAGSGKTAVLIERIIELVLDEKNPIDINKLLVVTFTKLAAS 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV + I K++ + N+ HL +L G + TI Sbjct: 67 EMRERVSKAIEK--------------KLEENQENE-------HLQKQLLLLSGA-DITTI 104 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 +FC+ ++ + N+ S+ I D +++ L +E + + +N++ Sbjct: 105 DSFCKDVLISYAHLVNLDSNIKIIDPSENEVLAKEVMQELFEELYENNDD 154 >gi|325847046|ref|ZP_08169872.1| putative ATP-dependent nuclease subunit A [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481018|gb|EGC84063.1| putative ATP-dependent nuclease subunit A [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 1021 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 23/127 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA AGSGKT +LV RV+ L++ P ++ +T T A+ EM R+ E ++ L D Sbjct: 23 VSAAAGSGKTRVLVDRVVSLMIEEKIPIKNMIIVTFTNKASVEMKDRIREKLSEL--LDD 80 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEANI 153 E + + K Q K N + ++T+H+FC + + + F L N+ Sbjct: 81 EKIDSSFVKKQIKAINDA-------------------FIKTLHSFCADMLRENFYLSDNL 121 Query: 154 TSHFAIA 160 + F IA Sbjct: 122 SPSFKIA 128 >gi|329737718|gb|EGG73961.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus epidermidis VCU028] Length = 1046 Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 92/191 (48%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R++ R+L + LL +T T +A EM HRV Sbjct: 28 VAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSAREMKHRV------------ 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I + K PN + R I I + ++ T+H+FC ++QQ +I Sbjct: 76 ---DKRIQEASFKDPNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLDID 125 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 HF + E ++ L+E+ T+ ++ + ++L F E+ E +S+D + + Sbjct: 126 PHFRTSSEAENILLLEQ----TIDDVLEQHYDKLDPHFIELTEQLSSDRNDDQF------ 175 Query: 214 NRTALKLIFFF 224 R+ +K ++FF Sbjct: 176 -RSIIKQLYFF 185 >gi|313902120|ref|ZP_07835531.1| recombination helicase AddA [Thermaerobacter subterraneus DSM 13965] gi|313467638|gb|EFR63141.1| recombination helicase AddA [Thermaerobacter subterraneus DSM 13965] Length = 1488 Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 25/140 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R+ VSA AGSGKT +LV+R+LR LL A P LL +T T+AAAAEM R+ Sbjct: 27 RNLLVSAAAGSGKTSVLVERILRRLLDPASPVEIDRLLVVTFTEAAAAEMKERI------ 80 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + + + P + + + LL G + T+H+FC I +Q+ Sbjct: 81 ---------RNRLEQALAEHPGDARLRRQLALL-------GRASISTVHSFCLRITRQYF 124 Query: 149 LEANITSHFAIADEEQSKKL 168 + +A E +++ L Sbjct: 125 YRLGLDPATRVAGEHEAQLL 144 >gi|319793174|ref|YP_004154814.1| uvrd/rep helicase [Variovorax paradoxus EPS] gi|315595637|gb|ADU36703.1| UvrD/REP helicase [Variovorax paradoxus EPS] Length = 1086 Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 81/152 (53%), Gaps = 11/152 (7%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHR 81 +A DP RS V A AG+GKT +LV R+LR LL + P +L +T TK AA EM R Sbjct: 21 VACDPRRSVAVEACAGAGKTWMLVSRILRALLEEGDSACEPHEILAITFTKKAAGEMRER 80 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNK--SDMSKARHLLITILETPGGLKVQTIHAF 139 + + + ++ S E L ++ ++G +P + + + + L +LE ++ +T HA+ Sbjct: 81 LDQWLEQFAEESPEELVKQLV-MRGVEPAAALAAVPRLKGLYRRLLEGGRPVQFRTFHAW 139 Query: 140 CEAIMQQFPL----EANITSHFAIADEEQSKK 167 +++ PL E + S++ + +++ + Sbjct: 140 FAGLLRNAPLAVLRELGLPSNYELLEDDAEAR 171 >gi|328957498|ref|YP_004374884.1| ATP-dependent deoxyribonuclease subunit A [Carnobacterium sp. 17-4] gi|328673822|gb|AEB29868.1| ATP-dependent deoxyribonuclease subunit A [Carnobacterium sp. 17-4] Length = 1268 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 23/139 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LVQRV+ + + + +L +T+T+AAA EM R+ Sbjct: 31 VSASAGSGKTTVLVQRVIEKIKSGTNVDEMLIVTYTEAAAKEMKARIQ------------ 78 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLL--ITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 IQ ++SDM RHL +T++ + T+HAFC +++++ N+ Sbjct: 79 ------VAIQEAVTSESDMELKRHLTRQVTLIHQAS---ISTLHAFCLQVIRRYYYLINL 129 Query: 154 TSHFAIADEEQSKKLIEEA 172 F + +E L++E+ Sbjct: 130 DPIFRLLTDETEILLLKES 148 >gi|78486038|ref|YP_391963.1| UvrD/REP helicase [Thiomicrospira crunogena XCL-2] gi|78364324|gb|ABB42289.1| UvrD/REP helicase [Thiomicrospira crunogena XCL-2] Length = 1182 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 2/131 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 P S V A AGSGKT +L QR L LL P ++ +T TK AAAEM R+LE + Sbjct: 45 PQHSYIVQAPAGSGKTALLTQRFLALLSQVETPEQVVAMTFTKKAAAEMRERILEALHFG 104 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 DE SA I ++ + + +L+ P L+++TI + ++QQ PL Sbjct: 105 LTSLDE--SASIYDQNTWHLAQAALQNNQQRQWKLLDNPNRLRIRTIDSMNGYLVQQMPL 162 Query: 150 EANITSHFAIA 160 + + + +A Sbjct: 163 LSRLGAQPQVA 173 >gi|315636561|ref|ZP_07891797.1| UvrD/REP helicase [Arcobacter butzleri JV22] gi|315479210|gb|EFU69907.1| UvrD/REP helicase [Arcobacter butzleri JV22] Length = 911 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 31/175 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + LLL A P+ +L LT T AA EMS R+ + + L D+ Sbjct: 7 LKASAGSGKTFALTVRYICLLLLGAKPNEILTLTFTNKAANEMSERIYKTLLT---LGDD 63 Query: 96 ILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A + I+ + +K ++ +++LI + L + TI F I+++F Sbjct: 64 --EAYLNAIENEVNLSKEEILGKKNILIKQF-SNANLSIFTIDKFVNKILREF------C 114 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209 + I+D+ + K N++++K YE L+ N++D +TLI Sbjct: 115 GYIGISDDFEIK------------------NDDIEKLSYEFLKSLNEKDFQTLID 151 >gi|157738272|ref|YP_001490956.1| putative recombination protein RecB [Arcobacter butzleri RM4018] gi|157700126|gb|ABV68286.1| ATP-dependent DNA helicase, UvrD/REP family [Arcobacter butzleri RM4018] Length = 910 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 31/175 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + LLL A P+ +L LT T AA EMS R+ + + L D+ Sbjct: 7 LKASAGSGKTFALTVRYICLLLLGAKPNEILTLTFTNKAANEMSERIYKTLLT---LGDD 63 Query: 96 ILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A + I+ + +K ++ +++LI + L + TI F I+++F I+ Sbjct: 64 --EAYLNAIENEVNLSKEEILGKKNILIKQF-SNANLSIFTIDKFVNKILREFCGYIGIS 120 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209 F I N++++K YE L+ N++D +TLI Sbjct: 121 DDFEIK------------------------NDDIEKLSYEFLKSLNEKDFQTLID 151 >gi|256851163|ref|ZP_05556552.1| recombination helicase AddA [Lactobacillus jensenii 27-2-CHN] gi|260660587|ref|ZP_05861502.1| recombination helicase AddA [Lactobacillus jensenii 115-3-CHN] gi|282934629|ref|ZP_06339872.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1] gi|297206028|ref|ZP_06923423.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii JV-V16] gi|256616225|gb|EEU21413.1| recombination helicase AddA [Lactobacillus jensenii 27-2-CHN] gi|260548309|gb|EEX24284.1| recombination helicase AddA [Lactobacillus jensenii 115-3-CHN] gi|281301204|gb|EFA93505.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1] gi|297149154|gb|EFH29452.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii JV-V16] Length = 1186 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 24/158 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +++ TK ++ + + VSA+AGSGKT +L +RV++L+ LL +T TKAAA Sbjct: 1 MVNYTKEQEAAINTRGKDILVSASAGSGKTMVLAERVIKLIKNGTSLDNLLVITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + L+DEI K++ R LL + + T Sbjct: 61 NEMKERIKRV------LNDEIAKNNSRKLK------------RELLRAEVAN-----IST 97 Query: 136 IHAFCEAIMQQFPLEANITSHFAI-ADEEQSKKLIEEA 172 I +FC ++ +F + F++ DE Q+ L E+A Sbjct: 98 IDSFCLDVVHRFYYVIGLDPSFSVLTDETQAALLKEKA 135 >gi|296272052|ref|YP_003654683.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299] gi|296096227|gb|ADG92177.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299] Length = 911 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 10/153 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + LLL A P+ +L LT T AA EMS R+ + + + D+ Sbjct: 7 LKASAGSGKTFALTVRYISLLLKGASPTEILALTFTNKAAKEMSERIFKTLKSLGE--DK 64 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + +I+ + + ++K +L+ L + L + TI F I+++F + Sbjct: 65 VYLEQISSVSELSVEQI-LNKKDYLINLYLNSE--LSIYTIDKFVNKILREFSGYIGVDD 121 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 F+I + IE + L S+ L+N ++L Sbjct: 122 DFSIKQDN-----IENLEYKFLQSLNLENFDKL 149 >gi|226314559|ref|YP_002774455.1| ATP-dependent nuclease subunit A [Brevibacillus brevis NBRC 100599] gi|226097509|dbj|BAH45951.1| ATP-dependent nuclease subunit A [Brevibacillus brevis NBRC 100599] Length = 1275 Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 38/168 (22%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++R ++ P LL +T T AAAAEM HR+ + + L Sbjct: 30 VAAAAGSGKTSVLVERIIRRIMDEKDPVGVDRLLVVTFTNAAAAEMRHRIGDALR--KAL 87 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 D+ P+ S + + LL + T+H+FC I++Q+ Sbjct: 88 KDD-------------PHSSHLRRQLALLQRA-------TITTLHSFCLGILRQYYYLIE 127 Query: 153 ITSHFAIADEEQSKKL----IEEAKKS---------TLASIMLDNNEE 187 + F IAD+ + + L +EE +S LA +MLD ++ Sbjct: 128 LDPDFRIADQMEGELLRQDVLEEQLESWYENDADFHALADVMLDGQDD 175 >gi|241895871|ref|ZP_04783167.1| ATP-dependent deoxyribonuclease, subunit A [Weissella paramesenteroides ATCC 33313] gi|241870914|gb|EER74665.1| ATP-dependent deoxyribonuclease, subunit A [Weissella paramesenteroides ATCC 33313] Length = 1269 Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 20/168 (11%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T S+ R+ VSA+AGSGKT +LV+RV++ LLA + + L +T T+AAA+EM Sbjct: 4 TDSQSAAIKTKGRNVLVSASAGSGKTRVLVERVMQRLLAGENVNEFLIVTFTEAAASEMK 63 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R L I S I + + R L+ L + T+HAF Sbjct: 64 ER----------LEGAIRSELIASV----------GEQRQHLLKQLRLLNIANISTLHAF 103 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 +++Q+ ++ F + D+ + ++ E + L ++NE+ Sbjct: 104 ALRLIEQYHYTIDLDPQFRLMDDAERTLVMLEVYNTLLEEQYANDNEQ 151 >gi|329734888|gb|EGG71188.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus epidermidis VCU045] Length = 1218 Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R++ R+L LL +T T +A EM HRV Sbjct: 28 VAAAAGSGKTAVLVERIIQRILRDEVDVDRLLVVTFTNLSAREMKHRV------------ 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I + K PN + R I I + ++ T+H+FC ++QQ +I Sbjct: 76 ---DKRIQEASFKDPNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLDID 125 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 HF + E ++ L+E+ T+ ++ + ++L F E+ E +S+D + + Sbjct: 126 PHFRTSSEAENILLLEQ----TIDDVLEQHYDKLDPHFIELTEQLSSDRNDDQF------ 175 Query: 214 NRTALKLIFFF 224 R+ +K ++FF Sbjct: 176 -RSIIKQLYFF 185 >gi|293368345|ref|ZP_06614973.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus epidermidis M23864:W2(grey)] gi|291317592|gb|EFE58010.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus epidermidis M23864:W2(grey)] Length = 1224 Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R++ R+L LL +T T +A EM HRV Sbjct: 34 VAAAAGSGKTAVLVERIIQRILRDEVDVDRLLVVTFTNLSAREMKHRV------------ 81 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I + K PN + R I I + ++ T+H+FC ++QQ +I Sbjct: 82 ---DKRIQEASFKDPNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLDID 131 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 HF + E ++ L+E+ T+ ++ + ++L F E+ E +S+D + + Sbjct: 132 PHFRTSSEAENILLLEQ----TIDDVLEQHYDKLDPHFIELTEQLSSDRNDDQF------ 181 Query: 214 NRTALKLIFFF 224 R+ +K ++FF Sbjct: 182 -RSIIKQLYFF 191 >gi|154685514|ref|YP_001420675.1| AddA [Bacillus amyloliquefaciens FZB42] gi|251764498|sp|A7Z368|ADDA_BACA2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|154351365|gb|ABS73444.1| AddA [Bacillus amyloliquefaciens FZB42] Length = 1235 Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 33/187 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R++R + A P LL +T T A+AAEM HR+ E Sbjct: 25 RDILVAAAAGSGKTAVLVERMIRKITAEEDPVDVDRLLVVTFTNASAAEMKHRIAE---- 80 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K K P + + LL + T+H+FC +++++ Sbjct: 81 -----------ALEKELAKNPGSLHIRRQLSLL-------NRASISTLHSFCLQVLKKYY 122 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F +AD+ + + L +E L + D + +AF+E+ + +D D+ Sbjct: 123 YMIDLDPGFRMADQTEGELLGDE----VLDELFEDEYAKGNQAFFELADRYTTDRHDLDL 178 Query: 205 ETLISDI 211 + L+ + Sbjct: 179 QDLVKRV 185 >gi|229541419|ref|ZP_04430479.1| recombination helicase AddA [Bacillus coagulans 36D1] gi|229325839|gb|EEN91514.1| recombination helicase AddA [Bacillus coagulans 36D1] Length = 1243 Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 25/139 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R+++ +L P LL +T T AAAAEM HR+ + I Sbjct: 31 VAAAAGSGKTAVLVERIIQKILDEHDPLDIDELLIVTFTNAAAAEMRHRIGKAI------ 84 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 +E +S+ +P+ + K LL + T+HAFC +++++ + Sbjct: 85 -EEAISS--------RPDSHHLRKQLSLL-------NKAPISTLHAFCLEVIRKYYYLID 128 Query: 153 ITSHFAIADEEQSKKLIEE 171 I F IAD+ +++ L +E Sbjct: 129 IDPGFRIADDTEAELLRDE 147 >gi|109946901|ref|YP_664129.1| putative recombination protein RecB [Helicobacter acinonychis str. Sheeba] gi|109714122|emb|CAJ99130.1| ATP-dependent nuclease subunit A [Helicobacter acinonychis str. Sheeba] Length = 966 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 9/144 (6%) Query: 29 DPTRSAWV-SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 D R V A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 2 DTKRQCMVLKASAGSGKTFALSVRFLALLFEGANPSEILTLTFTKKATAEMEGRILDYLK 61 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFCE 141 S E + I + K D++ A+ + L +K+ TI AF + Sbjct: 62 ILQKESSESEKEKSQNILKELEEKYDLNPSLVQDNAKKIYQRFLNAE--IKISTIDAFFQ 119 Query: 142 AIMQQFPLEANITSHFAIADEEQS 165 +I+++F ++++F + ++ Q+ Sbjct: 120 SILRKFCWFVGLSANFEVNEDTQA 143 >gi|330432051|gb|AEC17110.1| DNA-dependent helicase II [Gallibacterium anatis UMN179] Length = 721 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 38/168 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D +++ + E + A P + V A AGSGKT +L R+ L+ + N P+ +L Sbjct: 2 DFSELLDGLNERQREAVAA--PLGNYLVLAGAGSGKTRVLTYRIAWLIGVENVSPNGILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++L +IT Sbjct: 60 VTFTNKAAAEMRHRI-----------EDLLQDQIT------------------------P 84 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 P G+ V T H+ ++++ +A + + F I D E +L++ KS Sbjct: 85 PFGMWVGTFHSLAHRLLRRHAPDAGLPADFQILDSEDQLRLVKRLVKS 132 >gi|150014906|ref|YP_001307160.1| recombination helicase AddA [Clostridium beijerinckii NCIMB 8052] gi|251764509|sp|A6LPC4|ADDA_CLOB8 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|149901371|gb|ABR32204.1| Recombination helicase AddA [Clostridium beijerinckii NCIMB 8052] Length = 1245 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 95/199 (47%), Gaps = 35/199 (17%) Query: 22 SEQLLASDPTRSA--WVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 +++ L++ TR+ V+A AGSGKT +LV+R++R++ +P LL +T T AAAA Sbjct: 7 TDEQLSAIETRNCNLLVAAAAGSGKTAVLVERIIRIITNEENPVDIDKLLVVTFTNAAAA 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ + I+ K+ + SK +T+L + T+ Sbjct: 67 EMRERIADAIS-------------------KELENNPRSKNLQRQLTLLNRAN---ITTM 104 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC +++ ++ F I D Q++ ++ K + + D EE F ++ Sbjct: 105 HSFCLDVIKNNYHRIDLDPSFRIGD--QTEGIL--IKSEVIEELFEDKYEEEDIGFTNLV 160 Query: 197 EI----SNDEDIETLISDI 211 EI ND +++ L+ D+ Sbjct: 161 EIFSSYKNDNNLKNLVLDL 179 >gi|238756289|ref|ZP_04617604.1| DNA helicase II [Yersinia ruckeri ATCC 29473] gi|238705495|gb|EEP97897.1| DNA helicase II [Yersinia ruckeri ATCC 29473] Length = 720 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + NA P +++ +T Sbjct: 4 SDLLDSLNEKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 62 FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H +++ L+AN+ F I D + +L++ K+ Sbjct: 84 GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQHRLLKRIVKA 129 >gi|207092619|ref|ZP_03240406.1| ATP-dependent nuclease [Helicobacter pylori HPKX_438_AG0C1] Length = 210 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 10/134 (7%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + L E Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66 Query: 96 ILSAEITKIQG-------KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 L +E K Q K K D+ + I +++ TI AF ++I+++F Sbjct: 67 NLESEKEKSQNILKELEEKYHLKPDLVRNSAQKIYQRFLNAEIRISTIDAFFQSILRKFC 126 Query: 149 LEANITSHFAIADE 162 ++++F + ++ Sbjct: 127 WFVGLSANFEVNED 140 >gi|152974673|ref|YP_001374190.1| recombination helicase AddA [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|251764504|sp|A7GM37|ADDA_BACCN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|152023425|gb|ABS21195.1| Recombination helicase AddA [Bacillus cytotoxicus NVH 391-98] Length = 1242 Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 89/184 (48%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 28 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 83 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ ++P+ + K LL + TIH+FC +++ + Sbjct: 84 -----------ALEKVLIEEPSSRHIRKQLSLL-------NKASISTIHSFCLQVIRSYY 125 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 +I F IA++ +++ L EE L + E + F+E+++ ND+D+ Sbjct: 126 YMLDIDPRFRIANQTENELLKEEVLDDILEE---EYGMEENQLFFELVDRYTSDRNDDDL 182 Query: 205 ETLI 208 + +I Sbjct: 183 QRMI 186 >gi|253998950|ref|YP_003051013.1| UvrD/REP helicase [Methylovorus sp. SIP3-4] gi|253985629|gb|ACT50486.1| UvrD/REP helicase [Methylovorus sp. SIP3-4] Length = 1137 Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 11/161 (6%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 + QEH D S+ ++ +L S V A AG+GKT +L QR L+LL P + Sbjct: 7 ALQEHLLAQDDESRRRALEL------ESFIVEAPAGAGKTELLTQRYLKLLTTVREPEEI 60 Query: 66 LCLTHTKAAAAEMSHRVLE-IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 + +T T AAAEM R+L+ ++ A S L ++T G+ + + HL Sbjct: 61 IAITFTNKAAAEMRARILDSLLMADSGERPPQLHKQMTFALGQDALQHAAERGWHL---- 116 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 LE P L++ TI + + +Q PL + + A+ ++ + Sbjct: 117 LENPARLRIFTIDSLSSHLARQMPLMSRFGAQPAVTEDASA 157 >gi|317013352|gb|ADU83960.1| putative recombination protein RecB [Helicobacter pylori Lithuania75] Length = 951 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 15/162 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + L E Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66 Query: 96 ILSAEITKIQG-------KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 L +E K Q K K D+ + I +++ TI AF ++I+++F Sbjct: 67 NLESEKEKSQNILKELEEKYHLKPDLVRNSAPKIYQRFLNAEIRISTIDAFFQSILRKFC 126 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 ++++F + E +K ++ S L+++ N E+L+K Sbjct: 127 WFVGLSANFEV--NEDTKAHQQQLNASFLSAL---NGEQLEK 163 >gi|266620646|ref|ZP_06113581.1| ATP-dependent nuclease subunit A [Clostridium hathewayi DSM 13479] gi|288867733|gb|EFD00032.1| ATP-dependent nuclease subunit A [Clostridium hathewayi DSM 13479] Length = 1244 Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 25/149 (16%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 I+ TK ++ + R+ VSA AGSGKT +LV+R++R++ +P LL +T TKA Sbjct: 3 INWTKEQKAVIESRNRNLLVSAAAGSGKTAVLVERIIRMITEGKNPLDIDQLLVMTFTKA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RVL + DE L + P S HL + P ++ Sbjct: 63 AADEMRERVLLAV-------DEKLKED--------PENS------HLQMQAAMIPYA-RI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADE 162 TI +FC I+++ +I F + DE Sbjct: 101 TTIDSFCLGIIREHYNRLDIDPAFRVGDE 129 >gi|325261823|ref|ZP_08128561.1| ATP-dependent nuclease subunit A [Clostridium sp. D5] gi|324033277|gb|EGB94554.1| ATP-dependent nuclease subunit A [Clostridium sp. D5] Length = 1263 Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 92/195 (47%), Gaps = 25/195 (12%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKA 73 + T +Q + R+ VSA AGSGKT +LV+R++++L P+ LL +T T+A Sbjct: 3 VKWTSEQQKVIDLRERNILVSAAAGSGKTAVLVERIIQMLTDPKKPADVDRLLIVTFTEA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ E I K ++P + + L+ + ++ Sbjct: 63 AAAEMKERIRE---------------AIEKSLEERPEDVHLQRQATLIHSA-------QI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+FC +++++ +I F IA+E + K L ++ L + ++ + + Sbjct: 101 TTIHSFCLSVIREHFHVLDIDPGFRIAEEGELKLLKQDVLDELLEACYVNADTPFLEFVE 160 Query: 194 EILEISNDEDIETLI 208 + ND+ IE +I Sbjct: 161 KFGTGRNDKKIEEII 175 >gi|227529820|ref|ZP_03959869.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus vaginalis ATCC 49540] gi|227350304|gb|EEJ40595.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus vaginalis ATCC 49540] Length = 1286 Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 94/193 (48%), Gaps = 20/193 (10%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T S+Q D ++ VSA+AGSGKT +LV+R ++L+ H +L +T T AAA M Sbjct: 7 TPSQQRAIDDRGKNILVSASAGSGKTAVLVERAIKLIREGIHVDRMLMVTFTDAAAKSMR 66 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 ++ E + + + +AE + Q + N+ I L T + TIHAF Sbjct: 67 DKIREALQ--EAVRQPVHNAEEQQQQRRMINE----------INRLATA---DISTIHAF 111 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM----LDNNEELKKAFYEI 195 C +++++ ++ F + ++ + L++E ++ + L+ + + +F E+ Sbjct: 112 CLKLIKRYYYLIHLDPQFRLLTDDTERLLLQEEIWQQVSEKLYESPLEQANDERASFSEL 171 Query: 196 L-EISNDEDIETL 207 + SND D + L Sbjct: 172 VTNFSNDRDAQGL 184 >gi|237733547|ref|ZP_04564028.1| ATP-dependent deoxyribonuclease subunit A [Mollicutes bacterium D7] gi|229383380|gb|EEO33471.1| ATP-dependent deoxyribonuclease subunit A [Coprobacillus sp. D7] Length = 1233 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 61/129 (47%), Gaps = 20/129 (15%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH 91 S VSA AGSGKT ILV R++ L+ + + LL LT T AAA EM R+ + Sbjct: 20 SILVSAPAGSGKTKILVNRIMALIEDDGYNVDQLLVLTFTNAAALEMKQRLQVAL----- 74 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 DE L +I KP + + K + LL P + H FC +++Q+ Sbjct: 75 --DERLQEDIN-----KPLEQHLLKQKQLL------PKAY-ITNFHGFCSTLLKQYGYLI 120 Query: 152 NITSHFAIA 160 N+ S F I Sbjct: 121 NLNSKFDIC 129 >gi|167754673|ref|ZP_02426800.1| hypothetical protein CLORAM_00176 [Clostridium ramosum DSM 1402] gi|167705505|gb|EDS20084.1| hypothetical protein CLORAM_00176 [Clostridium ramosum DSM 1402] Length = 1233 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 61/129 (47%), Gaps = 20/129 (15%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH 91 S VSA AGSGKT ILV R++ L+ + + LL LT T AAA EM R+ + Sbjct: 20 SILVSAPAGSGKTKILVNRIMALIEDDGYNVDQLLVLTFTNAAALEMKQRLQVAL----- 74 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 DE L +I KP + + K + LL P + H FC +++Q+ Sbjct: 75 --DERLQEDIN-----KPLEQHLLKQKQLL------PKAY-ITNFHGFCSTLLKQYGYLI 120 Query: 152 NITSHFAIA 160 N+ S F I Sbjct: 121 NLNSKFDIC 129 >gi|153951355|ref|YP_001398782.1| ATP-dependent DNA helicase UvrD [Campylobacter jejuni subsp. doylei 269.97] gi|152938801|gb|ABS43542.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. doylei 269.97] Length = 921 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 13/133 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + L+L A + +L LT TK AA EM R++EI + Sbjct: 10 LEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIEIFLNLEKENKT 69 Query: 96 ILSAEITKIQGKKPNKSDM-----SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 E+ K+ GK +K ++ +K L T LK+ T AF I++ F L Sbjct: 70 SECNELCKLLGK--DKEELISLRNAKKEEFLRT------ELKISTFDAFFGKILRVFALN 121 Query: 151 ANITSHFAIADEE 163 ++S F +++E+ Sbjct: 122 LGLSSDFTMSEEK 134 >gi|257884720|ref|ZP_05664373.1| UvrD/REP helicase [Enterococcus faecium 1,231,501] gi|257820558|gb|EEV47706.1| UvrD/REP helicase [Enterococcus faecium 1,231,501] Length = 1240 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM R+ E + E Sbjct: 30 VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +++E SD + +H ++ P + T+HAFC +++++ +I Sbjct: 83 AVNSE-----------SDPVRRQHFTKQLILLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 F + +E L++E L + N+E + F + SND + L + + S Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186 >gi|217963572|ref|YP_002349250.1| recombination helicase AddA [Listeria monocytogenes HCC23] gi|251764533|sp|B8DF44|ADDA_LISMH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|217332842|gb|ACK38636.1| recombination helicase AddA [Listeria monocytogenes HCC23] gi|307571852|emb|CAR85031.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes L99] Length = 1235 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 34/184 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV R+++ L+ AN + LL +T T A+AAEM R+ Sbjct: 31 VAAAAGSGKTAVLVTRIIKKLIDESANLNVDELLIVTFTNASAAEMKFRI---------- 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + + G+ P+ + + + LL + T+H+FC I++++ EA+ Sbjct: 81 -----GKGLEEALGQNPDSAHLKRQVALL-------NYASISTLHSFCLEIIRKYYFEAD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILEI----SNDEDIETL 207 I F + + +S + +E + L ++NNE AF+ ++E +D ++ +L Sbjct: 129 IDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNE----AFFHLVESFTGDRSDAELHSL 184 Query: 208 ISDI 211 IS + Sbjct: 185 ISKL 188 >gi|227810114|ref|ZP_03989027.1| UvrD/REP helicase [Acidaminococcus sp. D21] gi|226904694|gb|EEH90612.1| UvrD/REP helicase [Acidaminococcus sp. D21] Length = 611 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 21/150 (14%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78 TK + L + R+ VSA AGSGKT +LV+R L +L + + +L +T T+ AA EM Sbjct: 7 TKEQTLAITTLDRNVSVSAGAGSGKTRVLVERFLTILKDPDKSANRILAITFTRKAAREM 66 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + L E+ K G+ + + RHL G + TI Sbjct: 67 RERI-----------RKSLLEEVGKTSGELRAHFE-EQLRHL--------DGAPITTIDG 106 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKL 168 FC I++ P+EA + F + +E + K+ Sbjct: 107 FCSQILRDHPVEAGMDPQFTVKEEYEVKEF 136 >gi|257898678|ref|ZP_05678331.1| UvrD/REP helicase [Enterococcus faecium Com15] gi|257836590|gb|EEV61664.1| UvrD/REP helicase [Enterococcus faecium Com15] Length = 1240 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM R+ E + E Sbjct: 30 VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +++E SD + +H ++ P + T+HAFC +++++ +I Sbjct: 83 AVNSE-----------SDPVRRQHFTKQLVLLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 F + +E L++E L + N+E + F + SND + L + + S Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186 >gi|229546208|ref|ZP_04434933.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis TX1322] gi|256852763|ref|ZP_05558133.1| exonuclease RexA [Enterococcus faecalis T8] gi|307291096|ref|ZP_07570981.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0411] gi|229308732|gb|EEN74719.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis TX1322] gi|256711222|gb|EEU26260.1| exonuclease RexA [Enterococcus faecalis T8] gi|306497750|gb|EFM67282.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0411] Length = 1264 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + + + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQNPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206 +I F + DE ++ L E+ + +N EE FY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177 Query: 207 LISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 --DDGLTN-----LIFSFYEF 191 >gi|118594717|ref|ZP_01552064.1| UvrD/REP helicase [Methylophilales bacterium HTCC2181] gi|118440495|gb|EAV47122.1| UvrD/REP helicase [Methylophilales bacterium HTCC2181] Length = 1074 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 90/163 (55%), Gaps = 16/163 (9%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A++P +S V+A AGSGKT +LV R+L+LL PS ++ +T TK AAA+M ++++++ Sbjct: 14 ATNPLQSFVVNAPAGSGKTTLLVTRILKLLTIIEKPSEIIAITFTKKAAAQMRRKLIDVM 73 Query: 87 TA-WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + ++DE+ + + + + R +E+ + + TI + I++ Sbjct: 74 GKNENKINDEVRTLALKAKEN--------AINRGWEANFIES---MDIITIDSLASKIIR 122 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + P+ + +S FA E+ S++ E AK++ L M +N+ EL Sbjct: 123 KAPILS--SSFFANITEDPSEQYEEAAKRTILE--MNENDMEL 161 >gi|114566673|ref|YP_753827.1| ATP-dependent exoDNAse subunit beta [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318286|sp|Q0AXU8|ADDA_SYNWW RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|114337608|gb|ABI68456.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 1236 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 31/178 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++L+L + LL +T T+AAA EM R+ + Sbjct: 21 VAAAAGSGKTTVLVERIIQLVLRDRIDIDRLLIVTFTQAAAGEMRERI-----------N 69 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E+ K + D R L + + + TIHAFC +++Q NI Sbjct: 70 AAFFKELEK------GREDGHLRRQLYLLNRSS-----ISTIHAFCSDVVRQHFHLVNID 118 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDIETLI 208 HF IAD ++ E K L ++ E+ F +++E +D+ +E LI Sbjct: 119 PHFRIADSTET----ELIKMEVLEELLDGEYEKGNDGFLDLVEAFGSNKDDKPLEALI 172 >gi|293572573|ref|ZP_06683547.1| recombination helicase AddA [Enterococcus faecium E980] gi|291607356|gb|EFF36704.1| recombination helicase AddA [Enterococcus faecium E980] Length = 1240 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM R+ E + E Sbjct: 30 VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +++E SD + +H ++ P + T+HAFC +++++ +I Sbjct: 83 AVNSE-----------SDPVRRQHFTKQLVLLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 F + +E L++E L + N+E + F + SND + L + + S Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186 >gi|86151975|ref|ZP_01070188.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni 260.94] gi|85841083|gb|EAQ58332.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni 260.94] Length = 921 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 13/133 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + L+L A + +L LT TK AA EM R++E + Sbjct: 10 LEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKENKT 69 Query: 96 ILSAEITKIQGKKPNKSDM-----SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 E+ K+ GK +K ++ +K L T LK+ T AF I++ F L Sbjct: 70 SECNELCKLLGK--DKEELISLRDAKKEEFLRT------ELKISTFDAFFGKILRVFALN 121 Query: 151 ANITSHFAIADEE 163 ++S FA+++E+ Sbjct: 122 LGLSSDFAMSEEK 134 >gi|257887557|ref|ZP_05667210.1| UvrD/REP helicase [Enterococcus faecium 1,141,733] gi|257823611|gb|EEV50543.1| UvrD/REP helicase [Enterococcus faecium 1,141,733] Length = 1240 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM R+ E + E Sbjct: 30 VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +++E SD + +H ++ P + T+HAFC +++++ +I Sbjct: 83 AVNSE-----------SDPVRRQHFTKQLVLLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 F + +E L++E L + N+E + F + SND + L + + S Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186 >gi|257085626|ref|ZP_05579987.1| UvrD/REP helicase [Enterococcus faecalis Fly1] gi|256993656|gb|EEU80958.1| UvrD/REP helicase [Enterococcus faecalis Fly1] Length = 1264 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + + + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQNPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206 +I F + DE ++ L E+ + +N EE FY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177 Query: 207 LISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 --DDGLTN-----LIFSFYEF 191 >gi|293378777|ref|ZP_06624934.1| ATP-dependent nuclease subunit A [Enterococcus faecium PC4.1] gi|292642570|gb|EFF60723.1| ATP-dependent nuclease subunit A [Enterococcus faecium PC4.1] Length = 1240 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM R+ E + E Sbjct: 30 VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +++E SD + +H ++ P + T+HAFC +++++ +I Sbjct: 83 AVNSE-----------SDPVRRQHFTKQLVLLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 F + +E L++E L + N+E + F + SND + L + + S Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186 >gi|227551328|ref|ZP_03981377.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecium TX1330] gi|257896051|ref|ZP_05675704.1| UvrD/REP helicase [Enterococcus faecium Com12] gi|227179539|gb|EEI60511.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecium TX1330] gi|257832616|gb|EEV59037.1| UvrD/REP helicase [Enterococcus faecium Com12] Length = 1240 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM R+ E + E Sbjct: 30 VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +++E SD + +H ++ P + T+HAFC +++++ +I Sbjct: 83 AVNSE-----------SDPVRRQHFTKQLVLLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 F + +E L++E L + N+E + F + SND + L + + S Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186 >gi|23098637|ref|NP_692103.1| ATP-dependent deoxyribonuclease subunit A [Oceanobacillus iheyensis HTE831] gi|81746699|sp|Q8ERW5|ADDA_OCEIH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|22776864|dbj|BAC13138.1| ATP-dependent deoxyribonuclease subunit A [Oceanobacillus iheyensis HTE831] Length = 1243 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 26/164 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R+++ LLA +P+ LL +T T AAA EM +RV + Sbjct: 21 VAAAAGSGKTAVLVERIIQKLLAEHNPTNIDALLVVTFTNAAAQEMRNRVGAAL------ 74 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 ++ L+A + I KK +++L+ + T+H+FC I+++ + Sbjct: 75 -EQALAANPSSIHLKKQ------------LSLLQRAS---ISTLHSFCLDIVKKNAYILD 118 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 I F IAD+ + L +E L D+N + +F+E++ Sbjct: 119 IDPSFRIADDMEMDLLKQEVLDDLLEEWYGDSNPN-QDSFFEVV 161 >gi|315030721|gb|EFT42653.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4000] Length = 1271 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 31 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 85 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + + + RH I P + T+HAFC ++++F Sbjct: 86 -------------VALQKAMNEEQNPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 131 Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206 +I F + DE ++ L E+ + +N EE FY++ SND Sbjct: 132 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 184 Query: 207 LISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 185 --DDGLTN-----LIFSFYEF 198 >gi|69246355|ref|ZP_00603911.1| UvrD/REP helicase [Enterococcus faecium DO] gi|258616338|ref|ZP_05714108.1| exonuclease RexA [Enterococcus faecium DO] gi|68195308|gb|EAN09759.1| UvrD/REP helicase [Enterococcus faecium DO] Length = 1240 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM R+ E + E Sbjct: 30 VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +++E SD + +H ++ P + T+HAFC +++++ +I Sbjct: 83 AVNSE-----------SDPVRRQHFTKQLVLLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 F + +E L++E L + N+E + F + SND + L + + S Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186 >gi|293569779|ref|ZP_06680866.1| recombination helicase AddA [Enterococcus faecium E1071] gi|291587527|gb|EFF19404.1| recombination helicase AddA [Enterococcus faecium E1071] Length = 1240 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM R+ E + E Sbjct: 30 VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +++E SD + +H ++ P + T+HAFC +++++ +I Sbjct: 83 AVNSE-----------SDPVRRQHFTKQLVLLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 F + +E L++E L + N+E + F + SND + L + + S Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186 >gi|116493558|ref|YP_805293.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus pentosaceus ATCC 25745] gi|122264978|sp|Q03D71|ADDA_PEDPA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116103708|gb|ABJ68851.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus pentosaceus ATCC 25745] Length = 1235 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 21/136 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LV+RV++ ++ LL +T T+AAA+EM R+ I Sbjct: 23 VSASAGSGKTSVLVERVIQKIINGEDVDRLLVVTFTEAAASEMKERIRAAIV-------- 74 Query: 96 ILSAEITKIQGKKPNK-SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 KK N+ SD+ H + L + T+HAFC +I++ + ++ Sbjct: 75 -----------KKINEVSDIELQNHFSMQ-LNKLNNANISTLHAFCMSIIRNYYYIIDLD 122 Query: 155 SHFAIADEEQSKKLIE 170 F I D +S+ L E Sbjct: 123 PTFRIMDPTESELLKE 138 >gi|320529153|ref|ZP_08030245.1| ATP-dependent nuclease subunit A [Selenomonas artemidis F0399] gi|320138783|gb|EFW30673.1| ATP-dependent nuclease subunit A [Selenomonas artemidis F0399] Length = 1281 Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 24/136 (17%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R++ ++ +L LT TKAAAAEM R+ + Sbjct: 24 VAAAAGSGKTRVLVERIIAQVRSGELSLDRVLVLTFTKAAAAEMRERI-----------E 72 Query: 95 EILSAEITKIQGKKPNKSDMSKA------RHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 L+AEI +I ++ SD + + +L+T G + T H+FC+ I+Q + Sbjct: 73 TALNAEIDRIAEERAATSDADEEIAALERQRILLT------GADISTFHSFCQRILQTYI 126 Query: 149 LEANITSHFAIADEEQ 164 I ++ +A E++ Sbjct: 127 EATQIPPNYRLASEQE 142 >gi|256962291|ref|ZP_05566462.1| UvrD/REP helicase [Enterococcus faecalis Merz96] gi|293383320|ref|ZP_06629235.1| ATP-dependent nuclease subunit A [Enterococcus faecalis R712] gi|293387523|ref|ZP_06632072.1| ATP-dependent nuclease subunit A [Enterococcus faecalis S613] gi|312905827|ref|ZP_07764847.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 512] gi|312909118|ref|ZP_07767977.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 516] gi|256952787|gb|EEU69419.1| UvrD/REP helicase [Enterococcus faecalis Merz96] gi|291079343|gb|EFE16707.1| ATP-dependent nuclease subunit A [Enterococcus faecalis R712] gi|291083033|gb|EFE19996.1| ATP-dependent nuclease subunit A [Enterococcus faecalis S613] gi|310628166|gb|EFQ11449.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 512] gi|311290542|gb|EFQ69098.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 516] Length = 1264 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 35/201 (17%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + + + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQNPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206 +I F + DE ++ L E+ + +N EE FY++ SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYQLTANFSNDRS--- 177 Query: 207 LISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 --DDGLTN-----LIFSFYEF 191 >gi|153209587|ref|ZP_01947447.1| UvrD/REP helicase family protein [Coxiella burnetii 'MSU Goat Q177'] gi|212218647|ref|YP_002305434.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuK_Q154] gi|120575306|gb|EAX31930.1| UvrD/REP helicase family protein [Coxiella burnetii 'MSU Goat Q177'] gi|212012909|gb|ACJ20289.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuK_Q154] Length = 1110 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 3/146 (2%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP +S V A AGSGKT +L+QR L+LL P ++ +T T+ AAAEM R II Sbjct: 10 ALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRER---II 66 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 A + + +E K + + + +H + P L++ TI A I Q Sbjct: 67 AALNEAQTQPAPSESHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQICSQ 126 Query: 147 FPLEANITSHFAIADEEQSKKLIEEA 172 P+ + + + E+ + EA Sbjct: 127 MPILCGFGAPPSTLEPEEIVEFYREA 152 >gi|165924171|ref|ZP_02220003.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 334] gi|165916386|gb|EDR34990.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 334] Length = 1110 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 3/146 (2%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP +S V A AGSGKT +L+QR L+LL P ++ +T T+ AAAEM R II Sbjct: 10 ALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRER---II 66 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 A + + +E K + + + +H + P L++ TI A I Q Sbjct: 67 AALNEAQTQPAPSESHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQICSQ 126 Query: 147 FPLEANITSHFAIADEEQSKKLIEEA 172 P+ + + + E+ + EA Sbjct: 127 MPILCGFGAPPSTLEPEEIVEFYREA 152 >gi|88601852|ref|YP_502030.1| UvrD/REP helicase [Methanospirillum hungatei JF-1] gi|88187314|gb|ABD40311.1| UvrD/REP helicase [Methanospirillum hungatei JF-1] Length = 1149 Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 27/187 (14%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH 91 S V+A AG+GKT +LV++ L L+ + +L LT T AAAEM RV + I Sbjct: 17 SMVVTAGAGTGKTFVLVEKYLNLVQDQGYRIRDVLALTFTDKAAAEMKERVRKTIA--ER 74 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 L D+ P+ A L+ V T H+FC I+++F +EA Sbjct: 75 LKDD-------------PDNQVWKDAHEELVIA-------PVMTFHSFCAQILREFAIEA 114 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 + F I DE Q+ + EA +++ EE++++ +L + +++ + Sbjct: 115 GLDPGFVILDEGQALAVEREA----FETLIRKPPEEIQESLIRLLAQIEKFQVNQIMTTL 170 Query: 212 ISNRTAL 218 N A Sbjct: 171 AKNTDAF 177 >gi|289435607|ref|YP_003465479.1| ATP-dependent nuclease, subunit A [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171851|emb|CBH28397.1| ATP-dependent nuclease, subunit A [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 1236 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 95/216 (43%), Gaps = 56/216 (25%) Query: 24 QLLASDPTRSAW----------------VSANAGSGKTHILVQRVLRLLL---ANAHPST 64 QL+ P S W V+A AGSGKT +LV R++ L+ +N + Sbjct: 3 QLIPEKPNDSTWTDDQWKAIQADGENILVAAAAGSGKTAVLVTRIIEKLINEKSNWNVDE 62 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 LL +T T A+AAEM R+ L DE+ + P+ + + K +L Sbjct: 63 LLIVTFTNASAAEMKFRI------GKALEDEL---------AQNPDSAHLKKQVAML--- 104 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 + T+H+FC I+++ EA+I +F +LIE + S + +L+N Sbjct: 105 ----NYASISTLHSFCLEIIRKHYFEADIDPNF---------RLIEPIESSMIRDEVLEN 151 Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKL 220 L+KA+ I N+ D L+ +R+ +L Sbjct: 152 --LLEKAY----SIENNNDFFHLVESFTGDRSDTEL 181 >gi|293554030|ref|ZP_06674630.1| recombination helicase AddA [Enterococcus faecium E1039] gi|291601812|gb|EFF32064.1| recombination helicase AddA [Enterococcus faecium E1039] Length = 1240 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM R+ E + E Sbjct: 30 VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +++E SD + +H ++ P + T+HAFC +++++ +I Sbjct: 83 AVNSE-----------SDPVRRQHFTKQLVLLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 F + +E L++E L + N+E + F + SND + L + + S Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186 >gi|317128676|ref|YP_004094958.1| recombination helicase AddA [Bacillus cellulosilyticus DSM 2522] gi|315473624|gb|ADU30227.1| recombination helicase AddA [Bacillus cellulosilyticus DSM 2522] Length = 1242 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 23/127 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R++R ++ N LL +T T AAAAEM HR+ + I L D Sbjct: 29 VAAAAGSGKTAVLVERIIRKIVNHNVDVDQLLIVTFTNAAAAEMRHRIGDAIE--KQLKD 86 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + S + + +T+L + T+H+FC +++QF +I Sbjct: 87 DPTSLHLRR-----------------QLTLLNRAN---ISTLHSFCMKVVRQFYYVVDID 126 Query: 155 SHFAIAD 161 F + D Sbjct: 127 PSFRLLD 133 >gi|308062822|gb|ADO04710.1| putative recombination protein RecB [Helicobacter pylori Cuz20] Length = 949 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 19/165 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + L E Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGG----------LKVQTIHAFCEAIMQ 145 L E K + + K ++ + HL + ++ +++ TI AF ++I++ Sbjct: 67 NLEDEKEKEKSQNILK-ELEEKYHLNPSFVQNSAQEIYQRFLNAEMRISTIDAFFQSILR 125 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 +F ++++F + E +K ++ S L+++ NNE+L++ Sbjct: 126 KFCWFVGLSANFEV--NEDTKAHQQQLNASFLSAL---NNEQLEE 165 >gi|291556731|emb|CBL33848.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Eubacterium siraeum V10Sc8a] Length = 1235 Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 89/179 (49%), Gaps = 23/179 (12%) Query: 34 AWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A VSA AGSGKT +L QRV+RL+ N PS ++ +T T+ AA E+ R+ ++ Sbjct: 18 AIVSAGAGSGKTAVLTQRVVRLICDKNENIDPSKIVVVTFTEKAANELKARLDALMR--Q 75 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-FPL 149 +S+ + SA++ ++ + + + KAR + TI +FC +++++ L Sbjct: 76 RISEAVSSADVRFLRNQ---RMKLRKAR--------------ISTISSFCFSLLRENIDL 118 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208 +I++ F++ DE +S L E+ L + ++ + E +D + +I Sbjct: 119 VTDISAGFSLIDETRSTALKEDILSDVLEDFYANGDKADRDVIVENYVAKDDRRLRDII 177 >gi|310826445|ref|YP_003958802.1| recombination helicase AddA [Eubacterium limosum KIST612] gi|308738179|gb|ADO35839.1| recombination helicase AddA [Eubacterium limosum KIST612] Length = 1190 Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 22/138 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA AGSGKT +L++R+ R+++ LL LT T++AAAEM R Sbjct: 20 VSAAAGSGKTALLIERIRRIVVEEKTSVDALLVLTFTRSAAAEMKER------------- 66 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 LSA + K+ SD +I + G + T+HAFC +++ + E I Sbjct: 67 --LSAALMAELEKEDVDSD------FVIAQISRLGAASISTLHAFCSRLVRDYFQEGGID 118 Query: 155 SHFAIADEEQSKKLIEEA 172 F + +E + +++EA Sbjct: 119 PEFKLGNETELSIMLQEA 136 >gi|212710171|ref|ZP_03318299.1| hypothetical protein PROVALCAL_01225 [Providencia alcalifaciens DSM 30120] gi|212687170|gb|EEB46698.1| hypothetical protein PROVALCAL_01225 [Providencia alcalifaciens DSM 30120] Length = 723 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 39/141 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ L+ + NA P +++ +T T AAAEM HR+ +++ Sbjct: 24 PRTNLLVLAGAGSGKTRVLVHRIAWLMSVENASPFSIMAVTFTNKAAAEMRHRINQLVGT 83 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + GG+ + T H +++Q Sbjct: 84 --------------------------------------SEGGMWIGTFHGLAHRLLRQHY 105 Query: 149 LEANITSHFAIADEEQSKKLI 169 L+AN+ F I D + +LI Sbjct: 106 LDANLPQDFQILDSDDQYRLI 126 >gi|261415584|ref|YP_003249267.1| Exodeoxyribonuclease V [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372040|gb|ACX74785.1| Exodeoxyribonuclease V [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326087|gb|ADL25288.1| exodeoxyribonuclease V, beta subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1266 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 76/144 (52%), Gaps = 10/144 (6%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 DP++S ++ A+AG+GKT+ + V +L+ +L +T+T+ AA E+ R+ + I Sbjct: 10 DPSQSLFIEASAGTGKTYTIQLMVSKLIKLGTPLKKILIVTYTEKAAGELKDRIRKKI-- 67 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT-ILETPGGLKVQTIHAFCEAIMQQF 147 DE+L KI ++ +S A+ L T + + TIH+FC+ +++F Sbjct: 68 -----DEVLINR--KIDKSDDSEEPLSDAKIALFTKAYQDVDNAAIFTIHSFCQKALKEF 120 Query: 148 PLEANITSHFAIADEEQSKKLIEE 171 +A + ++ D+++ LIE+ Sbjct: 121 AYDAGRPFNMSMIDDKEVNDLIEK 144 >gi|300721452|ref|YP_003710727.1| DNA-dependent ATPase I and helicase II [Xenorhabdus nematophila ATCC 19061] gi|297627944|emb|CBJ88490.1| DNA-dependent ATPase I and helicase II [Xenorhabdus nematophila ATCC 19061] Length = 721 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 43/158 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ LL + NA P +++ +T T AAAEM HR+ +I Sbjct: 21 PRTNMLVLAGAGSGKTRVLVHRIAWLLSVENASPFSIMAVTFTNKAAAEMRHRIENLIGT 80 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + GG+ + T H+ +++ Sbjct: 81 --------------------------------------SQGGMWIGTFHSLAHRLLRAHH 102 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 L+AN+ F I D E +LI K + ++ LD+ + Sbjct: 103 LDANLPQDFQILDSEDQHRLI----KRIIKAMNLDDKQ 136 >gi|317178260|dbj|BAJ56049.1| helicase [Helicobacter pylori F16] Length = 947 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 15/162 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + L E Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66 Query: 96 ILSAEITKIQG-----KKPNKSDMSKARHLLITILET--PGGLKVQTIHAFCEAIMQQFP 148 L E K Q ++ + D S ++ I + +++ TI AF ++I+++F Sbjct: 67 NLENEKEKSQNILKELEEKYRLDPSFVQNNAQKIYQRFLNAEIRISTIDAFFQSILRKFC 126 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 ++++F + E +K ++ +S L+++ NN++L++ Sbjct: 127 WFVGLSANFEV--NEDTKAYQQQLNESFLSAL---NNKQLEE 163 >gi|257881059|ref|ZP_05660712.1| UvrD/REP helicase [Enterococcus faecium 1,231,502] gi|257889644|ref|ZP_05669297.1| UvrD/REP helicase [Enterococcus faecium 1,231,410] gi|260559204|ref|ZP_05831390.1| UvrD/REP helicase [Enterococcus faecium C68] gi|293563136|ref|ZP_06677601.1| recombination helicase AddA [Enterococcus faecium E1162] gi|294623302|ref|ZP_06702164.1| recombination helicase AddA [Enterococcus faecium U0317] gi|314939883|ref|ZP_07847089.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a04] gi|314943730|ref|ZP_07850469.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133C] gi|314949686|ref|ZP_07853004.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0082] gi|314953232|ref|ZP_07856171.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133A] gi|314993688|ref|ZP_07859036.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133B] gi|314997395|ref|ZP_07862346.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a01] gi|257816717|gb|EEV44045.1| UvrD/REP helicase [Enterococcus faecium 1,231,502] gi|257826004|gb|EEV52630.1| UvrD/REP helicase [Enterococcus faecium 1,231,410] gi|260074961|gb|EEW63277.1| UvrD/REP helicase [Enterococcus faecium C68] gi|291597270|gb|EFF28459.1| recombination helicase AddA [Enterococcus faecium U0317] gi|291604914|gb|EFF34383.1| recombination helicase AddA [Enterococcus faecium E1162] gi|313588530|gb|EFR67375.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a01] gi|313591862|gb|EFR70707.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133B] gi|313594698|gb|EFR73543.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133A] gi|313597593|gb|EFR76438.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133C] gi|313640846|gb|EFS05426.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a04] gi|313643944|gb|EFS08524.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0082] Length = 1240 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM R+ E + E Sbjct: 30 VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +++E SD + +H ++ P + T+HAFC +++++ +I Sbjct: 83 SVNSE-----------SDPVRRQHFTKQLVLLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 F + +E L++E L + N+E + F + SND + L + + S Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186 >gi|325109169|ref|YP_004270237.1| exodeoxyribonuclease V [Planctomyces brasiliensis DSM 5305] gi|324969437|gb|ADY60215.1| Exodeoxyribonuclease V [Planctomyces brasiliensis DSM 5305] Length = 1168 Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 23/161 (14%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTL---LCLTHTKAAAAEMSHRVLEIITAW 89 S ++A AG GKT +L QR + LL TL + +T T AA EM R+ E + Sbjct: 17 SIALAAGAGCGKTFVLTQRFVTELLQQPSAETLSGLMAITFTDRAAREMRDRIREAV--- 73 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 D++L+ E +P A ++ LET +VQTIHAFC A ++ Sbjct: 74 ---RDQLLTCE----DADQP-------AWQEILQNLETA---RVQTIHAFCGATLRTHAT 116 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 E + F + DE + + + +S L+ ++ + N +L++ Sbjct: 117 ELGLDPDFGMLDEPTAAAMRNQVIQSELSRLLRERNADLQE 157 >gi|261207737|ref|ZP_05922422.1| UvrD/REP helicase [Enterococcus faecium TC 6] gi|294614014|ref|ZP_06693944.1| recombination helicase AddA [Enterococcus faecium E1636] gi|260078120|gb|EEW65826.1| UvrD/REP helicase [Enterococcus faecium TC 6] gi|291593121|gb|EFF24700.1| recombination helicase AddA [Enterococcus faecium E1636] Length = 1240 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM R+ E + E Sbjct: 30 VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +++E SD + +H ++ P + T+HAFC +++++ +I Sbjct: 83 SVNSE-----------SDPVRRQHFTKQLVLLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 F + +E L++E L + N+E + F + SND + L + + S Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186 >gi|294618395|ref|ZP_06697972.1| recombination helicase AddA [Enterococcus faecium E1679] gi|291595345|gb|EFF26661.1| recombination helicase AddA [Enterococcus faecium E1679] Length = 1240 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 21/178 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM R+ E + E Sbjct: 30 VSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREMKERIQEALQ-------E 82 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +++E SD + +H ++ P + T+HAFC +++++ +I Sbjct: 83 SVNSE-----------SDPVRRQHFTKQLVLLPTA-NISTLHAFCLTVIRRYYYLIDIDP 130 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 F + +E L++E L + N+E + F + SND + L + + S Sbjct: 131 VFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFS 186 >gi|187935208|ref|YP_001884280.1| recombination helicase AddA [Clostridium botulinum B str. Eklund 17B] gi|251764511|sp|B2THC8|ADDA_CLOBB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|187723361|gb|ACD24582.1| ATP-dependent nuclease subunit A [Clostridium botulinum B str. Eklund 17B] Length = 1243 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 28/155 (18%) Query: 17 ISQTK-SEQLLASDPTRSA--WVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 +S TK +E+ L++ TR V+A AGSGKT +LV+R+++++ +P LL +T Sbjct: 1 MSGTKWTEEQLSAITTRDCNLLVAAAAGSGKTAVLVERIIKIITNEENPIDIDKLLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAAEM R+ I+ KK +++ SK +T+L Sbjct: 61 TSAAAAEMRERIANAIS-------------------KKLDETPTSKNLQKQLTLLNRSN- 100 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 + TIH+FC +++ + ++ F I D+ + Sbjct: 101 --IMTIHSFCLGVIKNNFHKIDLDPSFRICDQTEG 133 >gi|304440181|ref|ZP_07400071.1| ATP-dependent nuclease subunit A [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371230|gb|EFM24846.1| ATP-dependent nuclease subunit A [Peptoniphilus duerdenii ATCC BAA-1640] Length = 1076 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 76/157 (48%), Gaps = 28/157 (17%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 I+ I + L+ D ++ V A AG+GKT +LV R++ L++ N P ++ +T T Sbjct: 7 INEIENNNRDNLITGD--KNFLVEAGAGAGKTFLLVNRLIDLIINKNIKPKEIVAITFTV 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA ++ R+ + E K + K NK + ILE ++ Sbjct: 65 KAATDLKKRIYD---------------EFAK-RAKTDNK---------IKNILEFIPEIQ 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH+FC +I+ + P +A ++ ++ + ++ + + + Sbjct: 100 IGTIHSFCNSIISRRPFDAGLSMNYRLLEDSEYDRYL 136 >gi|160902562|ref|YP_001568143.1| UvrD/REP helicase [Petrotoga mobilis SJ95] gi|160360206|gb|ABX31820.1| UvrD/REP helicase [Petrotoga mobilis SJ95] Length = 1065 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 79/155 (50%), Gaps = 20/155 (12%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHTKAAAAEMSHRV 82 DP R+ ++SA+AG+GKT+IL Q +++L N P+ +L +T T AA+EM +R+ Sbjct: 13 DDPNRNFFISASAGTGKTYILTQYFIKVLEKN-FPNADIVDNILTVTFTNKAASEMKNRI 71 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 +E ++ ++++ Q K ++S++ ++TI +FC Sbjct: 72 MEEVSNKLDKKPPYGASKLEWYQYWNEVKINLSRSW--------------IKTIDSFCSR 117 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 I+++ + + +F+I + Q + +E + S L Sbjct: 118 IIRENNISVGVDPNFSIISDFQRDREVERSVYSAL 152 >gi|188589987|ref|YP_001919480.1| recombination helicase AddA [Clostridium botulinum E3 str. Alaska E43] gi|251764510|sp|B2UX57|ADDA_CLOBA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|188500268|gb|ACD53404.1| ATP-dependent nuclease subunit A [Clostridium botulinum E3 str. Alaska E43] Length = 1244 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 28/155 (18%) Query: 17 ISQTK-SEQLLASDPTRSA--WVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 +S TK +E+ L++ TR V+A AGSGKT +LV+R+++++ +P LL +T Sbjct: 1 MSGTKWTEEQLSAITTRDCNLLVAAAAGSGKTAVLVERIIKIITNEENPIDIDKLLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAAEM R+ I+ KK +++ SK +T+L Sbjct: 61 TSAAAAEMRERIANAIS-------------------KKLDETPTSKNLQKQLTLLNRSN- 100 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 + TIH+FC +++ + ++ F I D+ + Sbjct: 101 --IMTIHSFCLGVIKNNFHKIDLDPSFRICDQTEG 133 >gi|307267168|ref|ZP_07548676.1| UvrD/REP helicase [Thermoanaerobacter wiegelii Rt8.B1] gi|306917819|gb|EFN48085.1| UvrD/REP helicase [Thermoanaerobacter wiegelii Rt8.B1] Length = 358 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 101/233 (43%), Gaps = 49/233 (21%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 T +QL + + V+A AGSGKT +LV+R+++L+ + +P LL +T T AAA+ Sbjct: 6 TYEQQLAINTRGSNLLVAAGAGSGKTAVLVERIIKLVTDDKNPVDIDKLLVVTFTNAAAS 65 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ E A I+K+ + P +S LL + TI Sbjct: 66 EMRERIAE--------------ALISKLD-QNPEDRRLSNQLTLL-------NKATITTI 103 Query: 137 HAFC-EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H+FC E + F L ++ +F I D+ ++ L EA +++ F E+ Sbjct: 104 HSFCLEVVRNNFFL-IDLDPNFRIGDDTETLLLKLEA---------------VEELFEEL 147 Query: 196 LEISNDEDIETLISDIISNRTA-------LKLIFFFFSYLWRRKIIEKSLWSI 241 + ++ED TL+ + LKL F S W K + L S Sbjct: 148 YQKEDNEDFLTLVESYGGTKDDKPLVDILLKLYDFVKSLPWPEKWLRDVLLSF 200 >gi|255030234|ref|ZP_05302185.1| hypothetical protein LmonL_16176 [Listeria monocytogenes LO28] Length = 218 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 34/184 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV R++ L+ AN + LL +T T A+AAEM R+ Sbjct: 31 VAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASAAEMKFRI---------- 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + + G+ P+ + + + LL + T+H+FC I++++ EA+ Sbjct: 81 -----GKGLEEALGQNPDSAHLKRQVALL-------NYASISTLHSFCLEIIRKYYFEAD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILEI----SNDEDIETL 207 I F + + +S + +E + L ++NNE AF+ ++E +D ++ +L Sbjct: 129 IDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNE----AFFHLVESFTGDRSDAELHSL 184 Query: 208 ISDI 211 IS + Sbjct: 185 ISKL 188 >gi|284802713|ref|YP_003414578.1| hypothetical protein LM5578_2469 [Listeria monocytogenes 08-5578] gi|284995855|ref|YP_003417623.1| hypothetical protein LM5923_2420 [Listeria monocytogenes 08-5923] gi|284058275|gb|ADB69216.1| hypothetical protein LM5578_2469 [Listeria monocytogenes 08-5578] gi|284061322|gb|ADB72261.1| hypothetical protein LM5923_2420 [Listeria monocytogenes 08-5923] Length = 1235 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 34/184 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV R++ L+ AN + LL +T T A+AAEM R+ Sbjct: 31 VAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASAAEMKFRI---------- 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + + G+ P+ + + + LL + T+H+FC I++++ EA+ Sbjct: 81 -----GKGLEEALGQNPDSAHLKRQVALL-------NYASISTLHSFCLEIIRKYYFEAD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE----ISNDEDIETL 207 I F + + +S + +E + L ++NNE AF+ ++E +D ++ +L Sbjct: 129 IDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNE----AFFHLVESFTGDRSDAELHSL 184 Query: 208 ISDI 211 IS + Sbjct: 185 ISKL 188 >gi|315150316|gb|EFT94332.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0012] Length = 1264 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 35/201 (17%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM R+ Sbjct: 24 DGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREMKERIQ----- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +Q + + + RH I P + T+HAFC ++++F Sbjct: 79 -------------VALQKAMNEEQNPERRRHFSRQIALLPTA-NISTLHAFCLTVIRRFY 124 Query: 149 LEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIET 206 +I F + DE ++ L E+ + +N EE FY + SND Sbjct: 125 YLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEE----FYRLTANFSNDRS--- 177 Query: 207 LISDIISNRTALKLIFFFFSY 227 D ++N LIF F+ + Sbjct: 178 --DDGLTN-----LIFSFYEF 191 >gi|291327137|ref|ZP_06127128.2| DNA helicase II [Providencia rettgeri DSM 1131] gi|291311697|gb|EFE52150.1| DNA helicase II [Providencia rettgeri DSM 1131] Length = 723 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 39/141 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ L+ + NA P +++ +T T AAAEM HR+ ++I Sbjct: 24 PRTNLLVLAGAGSGKTRVLVHRIAWLMSVENASPFSIMAVTFTNKAAAEMRHRINQLIGT 83 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + GG+ + T H +++Q Sbjct: 84 --------------------------------------SEGGMWIGTFHGLAHRLLRQHY 105 Query: 149 LEANITSHFAIADEEQSKKLI 169 ++AN+ F I D + +LI Sbjct: 106 MDANLPQDFQILDSDDQYRLI 126 >gi|16804306|ref|NP_465791.1| hypothetical protein lmo2267 [Listeria monocytogenes EGD-e] gi|224500935|ref|ZP_03669242.1| hypothetical protein LmonFR_00190 [Listeria monocytogenes FSL R2-561] gi|81592702|sp|Q8Y511|ADDA_LISMO RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|16411737|emb|CAD00345.1| lmo2267 [Listeria monocytogenes EGD-e] Length = 1235 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 34/184 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV R++ L+ AN + LL +T T A+AAEM R+ Sbjct: 31 VAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASAAEMKFRI---------- 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + + G+ P+ + + + LL + T+H+FC I++++ EA+ Sbjct: 81 -----GKGLEEALGQNPDSAHLKRQVALL-------NYASISTLHSFCLEIIRKYYFEAD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE----ISNDEDIETL 207 I F + + +S + +E + L ++NNE AF+ ++E +D ++ +L Sbjct: 129 IDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNE----AFFHLVESFTGDRSDAELHSL 184 Query: 208 ISDI 211 IS + Sbjct: 185 ISKL 188 >gi|317470347|ref|ZP_07929738.1| recombination helicase AddA [Anaerostipes sp. 3_2_56FAA] gi|316902151|gb|EFV24074.1| recombination helicase AddA [Anaerostipes sp. 3_2_56FAA] Length = 1186 Score = 58.2 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 29/181 (16%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 TK +Q + + S VSA AGSGKT +LV+R++ + + P LL +T+T AAA Sbjct: 4 TKEQQQVIEERGCSLLVSAAAGSGKTAVLVERIIEKISSKEEPVDVDRLLVVTYTHAAAN 63 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ I K++ N+ LI L ++ TI Sbjct: 64 EMKERIRRAIE--------------KKVEEDPENEH--------LIRQLSLIHKAQITTI 101 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC +++ + + ++ +FAI D+ Q ++ K L ++ + E AF E + Sbjct: 102 HSFCLNLIRDYYYKLDLDPNFAIGDQGQ----MDLMKLEVLDDVLEEAYAEQSDAFVEFI 157 Query: 197 E 197 E Sbjct: 158 E 158 >gi|224499009|ref|ZP_03667358.1| hypothetical protein LmonF1_04628 [Listeria monocytogenes Finland 1988] gi|254826845|ref|ZP_05231532.1| ATP-dependent nuclease [Listeria monocytogenes FSL N3-165] gi|258599223|gb|EEW12548.1| ATP-dependent nuclease [Listeria monocytogenes FSL N3-165] Length = 1235 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 34/184 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV R++ L+ AN + LL +T T A+AAEM R+ Sbjct: 31 VAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASAAEMKFRI---------- 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + + G+ P+ + + + LL + T+H+FC I++++ EA+ Sbjct: 81 -----GKGLEEALGQNPDSAHLKRQVALL-------NYASISTLHSFCLEIIRKYYFEAD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE----ISNDEDIETL 207 I F + + +S + +E + L ++NNE AF+ ++E +D ++ +L Sbjct: 129 IDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNE----AFFHLVESFTGDRSDAELHSL 184 Query: 208 ISDI 211 IS + Sbjct: 185 ISKL 188 >gi|47097165|ref|ZP_00234731.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 1/2a F6854] gi|254899032|ref|ZP_05258956.1| hypothetical protein LmonJ_04449 [Listeria monocytogenes J0161] gi|254912827|ref|ZP_05262839.1| ATP-dependent nuclease [Listeria monocytogenes J2818] gi|254937154|ref|ZP_05268851.1| ATP-dependent nuclease [Listeria monocytogenes F6900] gi|47014470|gb|EAL05437.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 1/2a F6854] gi|258609758|gb|EEW22366.1| ATP-dependent nuclease [Listeria monocytogenes F6900] gi|293590824|gb|EFF99158.1| ATP-dependent nuclease [Listeria monocytogenes J2818] Length = 1235 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 34/184 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV R++ L+ AN + LL +T T A+AAEM R+ Sbjct: 31 VAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASAAEMKFRI---------- 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + + G+ P+ + + + LL + T+H+FC I++++ EA+ Sbjct: 81 -----GKGLEEALGQNPDSAHLKRQVALL-------NYASISTLHSFCLEIIRKYYFEAD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILEI----SNDEDIETL 207 I F + + +S + +E + L ++NNE AF+ ++E +D ++ +L Sbjct: 129 IDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNE----AFFHLVESFTGDRSDAELHSL 184 Query: 208 ISDI 211 IS + Sbjct: 185 ISKL 188 >gi|254831297|ref|ZP_05235952.1| hypothetical protein Lmon1_08062 [Listeria monocytogenes 10403S] Length = 1235 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 34/184 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV R++ L+ AN + LL +T T A+AAEM R+ Sbjct: 31 VAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASAAEMKFRI---------- 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + + G+ P+ + + + LL + T+H+FC I++++ EA+ Sbjct: 81 -----GKGLEEALGQNPDSAHLKRQVALL-------NYASISTLHSFCLEIIRKYYFEAD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE----ISNDEDIETL 207 I F + + +S + +E + L ++NNE AF+ ++E +D ++ +L Sbjct: 129 IDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNE----AFFHLVESFTGDRSDAELHSL 184 Query: 208 ISDI 211 IS + Sbjct: 185 ISKL 188 >gi|2625021|gb|AAC46278.1| DNA helicase II [Serratia marcescens] Length = 720 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SDLLDSLNEKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 62 FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H +++ LEAN+ F I D + +L++ K+ Sbjct: 84 GMWIGTFHGLAHRLLRAHHLEANLPQDFQILDSDDQLRLLKRIIKA 129 >gi|15612511|ref|NP_224164.1| putative recombination protein RecB [Helicobacter pylori J99] gi|4156072|gb|AAD07027.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99] Length = 946 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 11/156 (7%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + L E Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66 Query: 96 ILSAEITKIQG-----KKPNKSDMSKARHLLITILET--PGGLKVQTIHAFCEAIMQQFP 148 L +E K Q ++ D S R+ I + +++ TI AF ++I+++F Sbjct: 67 NLESEKEKSQNILKELEEKYHLDPSLVRNNAQKIYQRFLNAEVRISTIDAFFQSILRKFC 126 Query: 149 LEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLD 183 ++++F + D E ++ + E S L + L+ Sbjct: 127 WFVGLSANFEVNEDTEAHQRQLNEGFLSALNNKQLE 162 >gi|124266478|ref|YP_001020482.1| DNA helicase/exodeoxyribonuclease V subunit A [Methylibium petroleiphilum PM1] gi|124259253|gb|ABM94247.1| DNA helicase/exodeoxyribonuclease V, subunit A [Methylibium petroleiphilum PM1] Length = 1086 Score = 58.2 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 31/66 (46%), Positives = 39/66 (59%), Gaps = 4/66 (6%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 +A DP RS V A AG+GKT +LV R+LR LL A P +L +T T+ AA EM R Sbjct: 23 VACDPRRSVVVEACAGAGKTWMLVSRILRALLDGAAPQEILAITFTRKAAGEMRER---- 78 Query: 86 ITAWSH 91 + W H Sbjct: 79 LQGWLH 84 >gi|295696731|ref|YP_003589969.1| Exodeoxyribonuclease V [Bacillus tusciae DSM 2912] gi|295412333|gb|ADG06825.1| Exodeoxyribonuclease V [Bacillus tusciae DSM 2912] Length = 1259 Score = 58.2 bits (139), Expect = 9e-07, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 53/192 (27%) Query: 30 PTRSAW-----------VSANAGSGKTHILVQRVLRLLL------------------ANA 60 PT W V+A AGSGKT +L +R +L A Sbjct: 4 PTEDQWRAITAIRSDVVVTAGAGSGKTWVLTERYAAMLNGRPTLPPPEETDAPIPTGAPC 63 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 P ++ +T T+AAAA+M ++ + +++ A T++ P + ++ A Sbjct: 64 RPGEIIAITFTEAAAADMRRKIRARLR-------QLIEAGETRLL---PYEEELETA--- 110 Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 + TIH++C ++++++P EA + F + DE ++++L+ E+ + L Sbjct: 111 -----------PISTIHSYCASLIRRYPFEAGVDPDFVVLDEPEARRLLRESAQEALMEA 159 Query: 181 MLDNNEELKKAF 192 + + ++ A Sbjct: 160 LKEEEPAVRSAL 171 >gi|32267142|ref|NP_861174.1| putative recombination protein RecB [Helicobacter hepaticus ATCC 51449] gi|32263195|gb|AAP78240.1| putative helicase [Helicobacter hepaticus ATCC 51449] Length = 971 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 9/148 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + LL A+P +L LT TK A+ EM HR+ + + + + Sbjct: 11 LKASAGSGKTFNLSLRFIYLLFQGANPHQILTLTFTKKASKEMYHRIHDYLKFLYDFTQD 70 Query: 96 ILSAEITKIQGK--KPNKSD---MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + E I K SD K + +++ ++ TI AF A++++F Sbjct: 71 KHTKEGMNIYAALIKEGLSDEFLRDKIESIYYEFIQS--NPRITTIDAFFHAVLKKFCWY 128 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLA 178 I+SHF + + SK I E STL+ Sbjct: 129 VGISSHFEVGN--VSKDEINERFLSTLS 154 >gi|290893619|ref|ZP_06556601.1| ATP-dependent nuclease [Listeria monocytogenes FSL J2-071] gi|290556821|gb|EFD90353.1| ATP-dependent nuclease [Listeria monocytogenes FSL J2-071] Length = 1051 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 34/184 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV R++ L+ AN + LL +T T A+AAEM R+ Sbjct: 31 VAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASAAEMKFRI---------- 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + + G+ P+ + + + LL + T+H+FC I++++ EA+ Sbjct: 81 -----GKGLEEALGQNPDSAHLKRQVALL-------NYASISTLHSFCLEIIRKYYFEAD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILEI----SNDEDIETL 207 I F + + +S + +E + L ++NNE AF+ ++E +D ++ +L Sbjct: 129 IDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNE----AFFHLVESFTGDRSDAELHSL 184 Query: 208 ISDI 211 IS + Sbjct: 185 ISKL 188 >gi|326389380|ref|ZP_08210948.1| recombination helicase AddA [Thermoanaerobacter ethanolicus JW 200] gi|325994743|gb|EGD53167.1| recombination helicase AddA [Thermoanaerobacter ethanolicus JW 200] Length = 1230 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 91/193 (47%), Gaps = 42/193 (21%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 T +QL + + V+A AGSGKT +LV+R+++L+ + +P LL +T T AAA+ Sbjct: 6 TYEQQLAINTRGSNLLVAAGAGSGKTAVLVERIIKLVTDDKNPVDIDKLLVVTFTNAAAS 65 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ E A I+K+ + P +S LL + + TI Sbjct: 66 EMRERIAE--------------ALISKLD-QNPEDRRLSNQLTLLNKAI-------ITTI 103 Query: 137 HAFC-EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H+FC E + F L ++ +F I D+ ++ +L E +++ F E+ Sbjct: 104 HSFCLEVVRNNFFL-IDLDPNFRIGDDTET---------------LLLKLEAVEELFEEL 147 Query: 196 LEISNDEDIETLI 208 + ++ED TL+ Sbjct: 148 YQKEDNEDFLTLV 160 >gi|167748814|ref|ZP_02420941.1| hypothetical protein ANACAC_03588 [Anaerostipes caccae DSM 14662] gi|167651784|gb|EDR95913.1| hypothetical protein ANACAC_03588 [Anaerostipes caccae DSM 14662] Length = 1186 Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 29/181 (16%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 TK +Q + + S VSA AGSGKT +LV+R++ + + P LL +T+T AAA Sbjct: 4 TKEQQQVIEERGCSLLVSAAAGSGKTAVLVERIIEKISSKEEPVDVDRLLVVTYTHAAAN 63 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ I K++ N+ LI L ++ TI Sbjct: 64 EMKERIRRAIE--------------KKVEEDPENEH--------LIRQLSLIHKAQITTI 101 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC +++ + + ++ +FAI D+ Q ++ K L ++ + E AF E + Sbjct: 102 HSFCLNLIRDYYYKLDLDPNFAIGDQGQ----MDLMKLEVLDDVLEEAYAEQSDAFVEFI 157 Query: 197 E 197 E Sbjct: 158 E 158 >gi|92117527|ref|YP_577256.1| UvrD/REP helicase [Nitrobacter hamburgensis X14] gi|91800421|gb|ABE62796.1| UvrD/REP helicase [Nitrobacter hamburgensis X14] Length = 1110 Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 11/158 (6%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS- 90 R+ V A AGSGKT ++ RV LL P + +T T+ AA+E+ R+ T S Sbjct: 19 RTLLVEAGAGSGKTSVMAGRVAVLLSKGTEPKHIAAITFTEFAASELRQRIERFTTELSL 78 Query: 91 -HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + ++L A ++ + K ++S+A L L TIH F +A+++ +P Sbjct: 79 GRVPKDLLQAFPDGVEAAQ--KENLSRA-------LGAFDQLMCGTIHGFAQALIKPYPA 129 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 EANI I D +++ +E + L S + ++++ Sbjct: 130 EANIDPGADIVDPAEAELAFQERYDAWLRSQLSGDHDD 167 >gi|15678539|ref|NP_275654.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta H] gi|2621583|gb|AAB85017.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta H] Length = 683 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 42/180 (23%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 T V A G+GKT I+V+RV L+ A PS+L+ +T T+ AA E+ R+ Sbjct: 22 TGPLLVVAGPGAGKTRIIVERVAHLIDERGAEPSSLVVITFTRKAADELKERI------- 74 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 I ++ G+ +++ TIH+FC I++ +P Sbjct: 75 -----------IRRVGGRAEE--------------------MQISTIHSFCNRILRMYPD 103 Query: 150 EANITSHFAIADEEQSKKLIEEAKKS-TLASIMLDNNEELKKAFYEILEISNDEDIETLI 208 + S+F + DEE I E ++ L ++ + ++ F E E N D ETLI Sbjct: 104 HHTLGSNFHVLDEENQLMFIYEHREQLGLGNVQRERFPLIQGFFSECQE--NMVDPETLI 161 >gi|312871743|ref|ZP_07731831.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 3008A-a] gi|311092685|gb|EFQ51041.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 3008A-a] Length = 1206 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 41/238 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLK 132 +EM R+ I KI+ + N K ++K Sbjct: 61 SEMKLRIKNAIK--------------NKIKEQPDNLFLKQQLAKV-----------DIAN 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TI +FC ++++F N+ +F+I ++ L++E +N ++ F Sbjct: 96 ISTIDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDF 155 Query: 193 YEILEISNDEDIETLISDII---------SNRTAL--KLIFFFFSYLWRRKIIEKSLW 239 Y + D ++E S ++ N A KL FF+ + + II +LW Sbjct: 156 YN--NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKKLDFFYQIDINKNDIISSNLW 211 >gi|227872193|ref|ZP_03990560.1| possible ATP-dependent deoxyribonuclease subunit A [Oribacterium sinus F0268] gi|227841976|gb|EEJ52239.1| possible ATP-dependent deoxyribonuclease subunit A [Oribacterium sinus F0268] Length = 1283 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/127 (35%), Positives = 67/127 (52%), Gaps = 24/127 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA AGSGKT +LV+ VL L+L NA S+L+ +T T+AAA EM R+ + + HL Sbjct: 21 VSAAAGSGKTAVLVEHVLSLILEENASLSSLVLMTFTEAAAEEMKERIKKRLE--EHLQ- 77 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 K +K + + I +L T + TIHAFC+ ++++ +I Sbjct: 78 ------------KGYDKRILRE-----IALLPTAN---ISTIHAFCKRLIEENYAGLSID 117 Query: 155 SHFAIAD 161 +HF I D Sbjct: 118 AHFRIGD 124 >gi|319401754|gb|EFV89962.1| recombination helicase AddA [Staphylococcus epidermidis FRI909] Length = 1218 Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R++ R+L + LL +T T +A EM HRV Sbjct: 28 VAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSAREMKHRV------------ 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I + K PN + R I I + ++ T+H+FC ++QQ +I Sbjct: 76 ---DKRIQEASFKDPNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLDID 125 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + ++L F E+ E +S+D + + Sbjct: 126 PNFRTSSEAENILLLEQ----TIDDVLEQHYDKLDPHFIELTEQLSSDRNDDQF------ 175 Query: 214 NRTALKLIFFF 224 R+ +K ++FF Sbjct: 176 -RSIIKQLYFF 185 >gi|307748346|gb|ADN91616.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni M1] Length = 921 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 11/131 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + L+L A + +L LT TK AA EM R++E + Sbjct: 10 LEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKENKT 69 Query: 96 ILSAEITKIQGKKPNK----SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 E+ K+ GK + D+ K L LK+ T AF I++ F L Sbjct: 70 SECNELCKLLGKDKEELISLRDVKKEEFL-------RTELKISTFDAFFGKILRVFALNL 122 Query: 152 NITSHFAIADE 162 ++S F +++E Sbjct: 123 GLSSDFTMSEE 133 >gi|315930994|gb|EFV09969.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp. jejuni 327] Length = 705 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 11/131 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + L+L A + +L LT TK AA EM R++E + Sbjct: 10 LEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKENKT 69 Query: 96 ILSAEITKIQGKKPNK----SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 E+ K+ GK + D+ K L LK+ T AF I++ F L Sbjct: 70 SECNELCKLLGKDKEELISLRDVKKEEFL-------RTELKISTFDAFFGKILRVFALNL 122 Query: 152 NITSHFAIADE 162 ++S F +++E Sbjct: 123 GLSSDFTMSEE 133 >gi|255282638|ref|ZP_05347193.1| ATP-dependent nuclease subunit A [Bryantella formatexigens DSM 14469] gi|255266931|gb|EET60136.1| ATP-dependent nuclease subunit A [Bryantella formatexigens DSM 14469] Length = 1237 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 17/157 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 VSA AGSGKT +LV+R+L +L HP LL +T T AAA EM R+ I Sbjct: 22 VSAAAGSGKTAVLVERILSMLTDKEHPRDIDRLLIVTFTNAAAGEMKDRIRVAIE----- 76 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 KI+ + + + + L + ++ TIH+FC+ +++ + Sbjct: 77 ---------QKIEDCRADGGEEERLLEHLQRQVSLLSNAQITTIHSFCQYVIRNHFHTID 127 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + +ADE + K L + + +N EE + Sbjct: 128 LDPGLHVADEGEQKLLQSDVMDKLVEEAYAENTEEFR 164 >gi|217033850|ref|ZP_03439275.1| hypothetical protein HP9810_877g54 [Helicobacter pylori 98-10] gi|216943748|gb|EEC23191.1| hypothetical protein HP9810_877g54 [Helicobacter pylori 98-10] Length = 938 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 15/163 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI--ITAWSHLS 93 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ I +L Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQKENLE 69 Query: 94 DEILSAEITKIQGKKPNKSDM------SKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 DE + I + K + ++A+ + L +++ TI AF ++I+++F Sbjct: 70 DEKEKEKSQNILKELEEKYRLDPSFVQNRAQEIYQRFLNAE--IRISTIDAFFQSILRKF 127 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 ++++F + E +K ++ S L+++ NNE+L++ Sbjct: 128 CWFVGLSANFEV--NEYTKAHQQQLNASFLSAL---NNEQLEE 165 >gi|240142707|ref|YP_002967220.1| putative helicase (ATP-dependent exodeoxyribonuclease, subunit A) [Methylobacterium extorquens AM1] gi|240012654|gb|ACS43879.1| putative helicase (ATP-dependent exodeoxyribonuclease, subunit A) [Methylobacterium extorquens AM1] Length = 1116 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 83/156 (53%), Gaps = 21/156 (13%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW-- 89 RS V A AGSGKT ++ R+ +L + P + ++ T+ AA+E+ RV +++ Sbjct: 23 RSMIVEAGAGSGKTALMSGRIALMLASGVAPGAIAAVSFTELAASELLERVGDVVARLLD 82 Query: 90 SHLSDEI---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + +E+ L ++ +QG +++++A L ++ T TIH FC+ +++ Sbjct: 83 GEVPEELRLALPHGLSPLQG-----ANLAEAEARLDELVCT-------TIHGFCQRLVKP 130 Query: 147 FPLEANITSHFAIADEEQS----KKLIEEAKKSTLA 178 +P+EA+I +ADE ++ + L++E + L+ Sbjct: 131 YPVEADIDPGARVADEAEADGIFRDLLDEWLRECLS 166 >gi|157415705|ref|YP_001482961.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni 81116] gi|157386669|gb|ABV52984.1| putative helicase [Campylobacter jejuni subsp. jejuni 81116] Length = 921 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 11/131 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + L+L A + +L LT TK AA EM R++E + Sbjct: 10 LEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKENKT 69 Query: 96 ILSAEITKIQGKKPNK----SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 E+ K+ GK + D+ K L LK+ T AF I++ F L Sbjct: 70 SECNELCKLLGKDKEELISLRDVKKEEFL-------RTELKISTFDAFFGKILRVFALNL 122 Query: 152 NITSHFAIADE 162 ++S F +++E Sbjct: 123 GLSSDFTMSEE 133 >gi|24213666|ref|NP_711147.1| exodeoxyribonuclease V subunit beta [Leptospira interrogans serovar Lai str. 56601] gi|24194474|gb|AAN48165.1| exodeoxyribonuclease V beta chain [Leptospira interrogans serovar Lai str. 56601] Length = 1046 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 70/131 (53%), Gaps = 31/131 (23%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWS 90 +S+++ A+AG+GKT+ +++ V+ L+L + P T +L LT+T+ AA E+ R Sbjct: 10 KSSFIEASAGTGKTYTIMEIVIDLILEHKIPLTQILILTYTEKAAGELKER--------- 60 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 L +++S+ +TK +AR L + + TIH FC I++++P+E Sbjct: 61 -LRKKLISSGLTK------------EAREL--------DQVTISTIHGFCNTILKEYPVE 99 Query: 151 ANITSHFAIAD 161 +++ + D Sbjct: 100 TETHTNWILTD 110 >gi|29654533|ref|NP_820225.1| ATP-dependent nuclease subunit A [Coxiella burnetii RSA 493] gi|29541800|gb|AAO90739.1| ATP-dependent nuclease subunit A [Coxiella burnetii RSA 493] Length = 1110 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 3/146 (2%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP +S V A AGSGKT +L+QR L+LL P ++ +T T+ AAAEM R II Sbjct: 10 ALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRER---II 66 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 A + + ++ K + + + +H + P L++ TI A I Q Sbjct: 67 AALNEAQTQPAPSDSHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQICSQ 126 Query: 147 FPLEANITSHFAIADEEQSKKLIEEA 172 P+ + + + E+ + EA Sbjct: 127 MPILCGFGAPPSTLEPEEIVEFYREA 152 >gi|291549061|emb|CBL25323.1| recombination helicase AddA, Firmicutes type [Ruminococcus torques L2-14] Length = 1239 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 25/192 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAA 76 T+ +Q + R+ VSA AGSGKT +LV+R++ + P+ LL +T+T+AAAA Sbjct: 6 TEEQQKVIDLRDRNILVSAAAGSGKTAVLVERIISRITDENDPADVDRLLVVTYTEAAAA 65 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ A I K ++P ++ + L+ + TI Sbjct: 66 EMKERI---------------GAAIEKKLEEQPGNVNLEQQSTLI-------HNASIMTI 103 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC ++++ I F IA+E + + L+++ + + + + +E + Sbjct: 104 HSFCLSVIRDHFHVIGIDPAFRIAEEGELRLLMQDVLEELIENFYAEGSEAFLNFVDQYG 163 Query: 197 EISNDEDIETLI 208 ND+ IE LI Sbjct: 164 TGRNDQKIEELI 175 >gi|212212385|ref|YP_002303321.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuG_Q212] gi|212010795|gb|ACJ18176.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuG_Q212] Length = 1110 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 3/146 (2%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP +S V A AGSGKT +L+QR L+LL P ++ +T T+ AAAEM R II Sbjct: 10 ALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRER---II 66 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 A + + ++ K + + + +H + P L++ TI A I Q Sbjct: 67 AALNEAQTQPAPSDSHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQICSQ 126 Query: 147 FPLEANITSHFAIADEEQSKKLIEEA 172 P+ + + + E+ + EA Sbjct: 127 MPILCGFGAPPSTLEPEEIVEFYREA 152 >gi|154707778|ref|YP_001424668.1| ATP-dependent nuclease subunit A [Coxiella burnetii Dugway 5J108-111] gi|154357064|gb|ABS78526.1| ATP-dependent nuclease subunit A [Coxiella burnetii Dugway 5J108-111] Length = 1110 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 3/146 (2%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP +S V A AGSGKT +L+QR L+LL P ++ +T T+ AAAEM R II Sbjct: 10 ALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRER---II 66 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 A + + ++ K + + + +H + P L++ TI A I Q Sbjct: 67 AALNEAQTQPAPSDSHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQICSQ 126 Query: 147 FPLEANITSHFAIADEEQSKKLIEEA 172 P+ + + + E+ + EA Sbjct: 127 MPILCGFGAPPSTLEPEEIVEFYREA 152 >gi|154246915|ref|YP_001417873.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] gi|154161000|gb|ABS68216.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] Length = 1131 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 9/135 (6%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 RS V A AGSGKT ++ R+ +L P + +T T+ AA+E+ RV E + + Sbjct: 24 RSILVEAGAGSGKTAVMAGRIAAMLAEGVSPRAIAAVTFTELAASELLSRVREFV---AD 80 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKA-RHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 LSD ++ E+ + +S+A R L + TIH FC+ +++ +P E Sbjct: 81 LSDGKIATEL-----RVALPHGLSQAHRDNLAAASTAIDEITCSTIHGFCQRLIKPYPAE 135 Query: 151 ANITSHFAIADEEQS 165 A+I + D Q+ Sbjct: 136 ADIDPGAGVMDRNQA 150 >gi|108563927|ref|YP_628243.1| putative recombination protein RecB [Helicobacter pylori HPAG1] gi|107837700|gb|ABF85569.1| ATP-dependent nuclease [Helicobacter pylori HPAG1] Length = 953 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 27/169 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + + Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYL--------K 61 Query: 96 ILSAEITKIQGKKPNKSDMSK----ARHLLITILETPGG----------LKVQTIHAFCE 141 IL E + + KK ++ K HL +++ +++ TI AF + Sbjct: 62 ILQKENLENENKKEKSQNILKELEEKYHLDPSLVRNSAPKIYQRFLNAEIRISTIDAFFQ 121 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 +I+++F ++++F + E +K ++ L+++ NNE+L++ Sbjct: 122 SILRKFCWFVGLSANFEV--NEDTKAHQQQLNDGFLSAL---NNEQLEE 165 >gi|161830545|ref|YP_001597082.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 331] gi|161762412|gb|ABX78054.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 331] Length = 1110 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 3/146 (2%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP +S V A AGSGKT +L+QR L+LL P ++ +T T+ AAAEM R II Sbjct: 10 ALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRER---II 66 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 A + + ++ K + + + +H + P L++ TI A I Q Sbjct: 67 AALNEAQTQPAPSDSHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQICSQ 126 Query: 147 FPLEANITSHFAIADEEQSKKLIEEA 172 P+ + + + E+ + EA Sbjct: 127 MPILCGFGAPPSTLEPEEIVEFYREA 152 >gi|240138235|ref|YP_002962707.1| putative ATP-dependent exodeoxyribonuclease (Subunit A)/helicase [Methylobacterium extorquens AM1] gi|240008204|gb|ACS39430.1| putative ATP-dependent exodeoxyribonuclease (Subunit A)/helicase [Methylobacterium extorquens AM1] Length = 1116 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 83/156 (53%), Gaps = 21/156 (13%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW-- 89 RS V A AGSGKT ++ R+ +L + P + ++ T+ AA+E+ RV +++ Sbjct: 23 RSMIVEAGAGSGKTALMSGRIALMLASGVAPGAIAAVSFTELAASELLERVGDVVAHLLA 82 Query: 90 SHLSDEI---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + +E+ L ++ +QG +++++A L ++ T TIH FC+ +++ Sbjct: 83 GEVPEELRLALPHGLSPLQG-----ANLAEAEARLDELVCT-------TIHGFCQRLVKP 130 Query: 147 FPLEANITSHFAIADEEQS----KKLIEEAKKSTLA 178 +P+EA+I +ADE ++ + L++E + L+ Sbjct: 131 YPVEADIDPGARVADEAEADGIFRDLLDEWLRECLS 166 >gi|268680529|ref|YP_003304960.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946] gi|268618560|gb|ACZ12925.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946] Length = 907 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R L LL A+ ++ LT T +A EM R+ E + + + Sbjct: 9 LEASAGSGKTFALSVRYLSLLFMGANAQKIVALTFTNKSAHEMKTRIFETLKDLENKEEL 68 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 AE Q K + + + H+L +L+ +K+ T+ AF I++ F L + Sbjct: 69 HAIAE----QTGKSEEVLLREKEHVLRHLLQAD--IKISTLDAFFALILRHFALNVGLQP 122 Query: 156 HFAIADEEQSKKLIEE 171 F+I +E +KLIE+ Sbjct: 123 DFSIGEETLDEKLIEQ 138 >gi|323341189|ref|ZP_08081436.1| exonuclease RexA [Lactobacillus ruminis ATCC 25644] gi|323091383|gb|EFZ34008.1| exonuclease RexA [Lactobacillus ruminis ATCC 25644] Length = 1244 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 19/136 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LV+RV+ + LL LT T+AAA EM R Sbjct: 22 VSASAGSGKTRVLVERVVDKIKHGIDVDRLLILTFTEAAAKEMKER-------------- 67 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 I K + N+++ + LI L + TI AFC +Q + +A++ Sbjct: 68 -----IQKALREACNQTEDEHQKGFLINQLVKLNTADISTIDAFCLKFIQNYYYKASLDP 122 Query: 156 HFAIADEEQSKKLIEE 171 F + ++ K+L+ E Sbjct: 123 SFRLLTDQTEKRLLRE 138 >gi|253991590|ref|YP_003042946.1| DNA-dependent helicase II [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638468|emb|CAR67090.1| dna helicase ii (ec 3.6.1.-) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783040|emb|CAQ86205.1| DNA helicase II [Photorhabdus asymbiotica] Length = 723 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 43/158 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ LL + NA P +++ +T T AAAEM HR+ +I Sbjct: 24 PRTNMLVLAGAGSGKTRVLVHRIAWLLSVENASPFSIMAVTFTNKAAAEMRHRIENLIGT 83 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + GG+ + T H +++ Sbjct: 84 --------------------------------------SQGGMWIGTFHGLAHRLLRAHH 105 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 L+AN+ F I D E +L+ K + ++ LD+ + Sbjct: 106 LDANLPQDFQILDSEDQHRLL----KRIIKAMNLDDKQ 139 >gi|320539382|ref|ZP_08039051.1| DNA-dependent ATPase I and helicase II [Serratia symbiotica str. Tucson] gi|320030507|gb|EFW12517.1| DNA-dependent ATPase I and helicase II [Serratia symbiotica str. Tucson] Length = 720 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ D +++ +SE + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SDLFDSLNEKQSEAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ H+L T + G Sbjct: 62 FTNKAAAEMRHRI-----------------------------------EHVLGT---SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ + T H +++ +EAN+ F I D + +L++ Sbjct: 84 GMWIGTFHGLAHRLLRAHHMEANLPQDFQILDSDDQLRLLK 124 >gi|162448185|ref|YP_001621317.1| DNA helicase II [Acholeplasma laidlawii PG-8A] gi|161986292|gb|ABX81941.1| DNA helicase, UvrD/REP type [Acholeplasma laidlawii PG-8A] Length = 382 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 39/178 (21%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM- 78 K ++L + R ++ A AGSGKT ++V+R+ RL+L P+ +LC+T T A EM Sbjct: 4 NKEQELAVTSNERCIFLIAGAGSGKTRVIVERIKRLILNGVDPNEILCITFTNKATDEMK 63 Query: 79 ----------------------SHRVLEIITAWSHLS-DEILSAEITKIQ---GKKPNKS 112 SH++ ++ + S DE+L K KKP Sbjct: 64 ERLKGYDVATHTFHGYCYQVLSSHKIFQVFEYNNEFSPDEVLKVATYKNSLKTSKKPKIY 123 Query: 113 DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 D +A L + + F + +++ FP N DE Q L++ Sbjct: 124 DTYEAY------------LNTRNLLDFDDLMIEAFPYMGNHPFKHIFIDEFQDTNLLQ 169 >gi|149182415|ref|ZP_01860891.1| AddA [Bacillus sp. SG-1] gi|148849878|gb|EDL64052.1| AddA [Bacillus sp. SG-1] Length = 1258 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 89/184 (48%), Gaps = 28/184 (15%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ +L + LL +T T A+AAEM HR+ E + Sbjct: 27 RDILVAAAAGSGKTAVLVERIIQKILDKEDGINVDELLVVTFTNASAAEMRHRIGEAL-- 84 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 ++ +SA+ PN + K LL + T+H+FC +++++ Sbjct: 85 -----EKAISAD--------PNSYHLRKQLSLL-------NRASISTLHSFCLEVIRKYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208 +I F I D+ + + L +E + +E +FY++++ ++ + + Sbjct: 125 YLIDIDPGFRILDDTEGELLRDEVLDELFEE---EYGKEDNDSFYKLVDTFTNDRSDAAL 181 Query: 209 SDII 212 D+I Sbjct: 182 QDMI 185 >gi|317014973|gb|ADU82409.1| putative recombination protein RecB [Helicobacter pylori Gambia94/24] Length = 946 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 17/159 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + L E Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGG----------LKVQTIHAFCEAIMQ 145 L E K Q ++ + HL ++++ +++ TI AF ++I++ Sbjct: 67 NLENEKEKSQNI---LKELEEKYHLDPSLVQNSAQKIYQRFLNAEIRISTIDAFFQSILR 123 Query: 146 QFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLD 183 +F ++++F + D E + + E S L S L+ Sbjct: 124 KFCWFVGLSANFEVNEDTEAYQACLNEGFLSALNSEQLE 162 >gi|317121624|ref|YP_004101627.1| recombination helicase AddA [Thermaerobacter marianensis DSM 12885] gi|315591604|gb|ADU50900.1| recombination helicase AddA [Thermaerobacter marianensis DSM 12885] Length = 1504 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 25/139 (17%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAW 89 S VSA AG+GKT +LV+R+++ LL A P LL +T T+AAA +M R+ E + Sbjct: 39 SLLVSAAAGAGKTTVLVERIVQRLLDPADPLDVDRLLVVTFTEAAATQMKDRIRERL--- 95 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 E+ A+ +PN DM R L + G + T+H+FC I++Q+ Sbjct: 96 -----ELAIAQ-------RPN--DMHLRRQLALL-----GRASISTVHSFCLRIVRQYFY 136 Query: 150 EANITSHFAIADEEQSKKL 168 + +A E +S+ L Sbjct: 137 RLGLDPAAKVAGEHESQLL 155 >gi|255305967|ref|ZP_05350139.1| ATP-dependent nuclease subunit A [Clostridium difficile ATCC 43255] Length = 1275 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 29/180 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R+++++ + +P LL +T T AAA+EM R+ + I Sbjct: 23 VAAAAGSGKTAVLVERIIQMITSRENPIDIDKLLVVTFTNAAASEMRERIGDAI------ 76 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 GK +++ +K + +L + TIH+FC +++ N Sbjct: 77 -------------GKALDENPENKHLQNQLVLLNKSS---ITTIHSFCLDVIKSNFHRIN 120 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212 + +F I D+ + L +EA + + D EE + F ++E + + + DII Sbjct: 121 LDPNFRIGDQTECAILKQEA----IEEVFEDLYEERDEGFLNLVESYAERGGDKEVQDII 176 >gi|291532505|emb|CBL05618.1| recombination helicase AddA, Firmicutes type [Megamonas hypermegale ART12/1] Length = 1001 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 27/134 (20%) Query: 32 RSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 ++ V+A AGSGKT +LV+RV+ R++ + +L +T T AAAAEM R+ IT Sbjct: 16 KNILVAAAAGSGKTSVLVERVIQRIVNKTCDINQILVVTFTNAAAAEMRERIASAITE-- 73 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 SD K R L++ + T+HAFC+ I++Q+ + Sbjct: 74 -------------------KLSDKDKERQLVLL-----NASSISTLHAFCQNIIRQYFHQ 109 Query: 151 ANITSHFAIADEEQ 164 + F +A+ ++ Sbjct: 110 LGLDPKFRLANPQE 123 >gi|255100077|ref|ZP_05329054.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-63q42] Length = 1275 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 29/180 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R+++++ + +P LL +T T AAA+EM R+ + I Sbjct: 23 VAAAAGSGKTAVLVERIIQMITSRENPIDIDKLLVVTFTNAAASEMRERIGDAI------ 76 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 GK +++ +K + +L + TIH+FC +++ N Sbjct: 77 -------------GKALDENPENKHLQNQLVLLNKSS---ITTIHSFCLDVIKSNFHRIN 120 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212 + +F I D+ + L +EA + + D EE + F ++E + + + DII Sbjct: 121 LDPNFRIGDQTECAILKQEA----IEEVFEDLYEERDEGFLNLVESYAERGGDKEVQDII 176 >gi|126698625|ref|YP_001087522.1| ATP-dependent nuclease subunit A [Clostridium difficile 630] gi|123174482|sp|Q18AN9|ADDA_CLOD6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|115250062|emb|CAJ67882.1| ATP-dependent nuclease subunit A (ATP-dependent helicase addA) [Clostridium difficile] Length = 1275 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 29/180 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R+++++ + +P LL +T T AAA+EM R+ + I Sbjct: 23 VAAAAGSGKTAVLVERIIQMITSRENPIDIDKLLVVTFTNAAASEMRERIGDAI------ 76 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 GK +++ +K + +L + TIH+FC +++ N Sbjct: 77 -------------GKALDENPENKHLQNQLVLLNKSS---ITTIHSFCLDVIKSNFHRIN 120 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212 + +F I D+ + L +EA + + D EE + F ++E + + + DII Sbjct: 121 LDPNFRIGDQTECAILKQEA----IEEVFEDLYEERDEGFLNLVESYAERGGDKEVQDII 176 >gi|218283946|ref|ZP_03489814.1| hypothetical protein EUBIFOR_02410 [Eubacterium biforme DSM 3989] gi|218215525|gb|EEC89063.1| hypothetical protein EUBIFOR_02410 [Eubacterium biforme DSM 3989] Length = 1036 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 90/182 (49%), Gaps = 33/182 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 VSA+AGSGKT +LV+R+ +L+L + H S ++L +T TK AAAEM R+L + + Sbjct: 20 VSASAGSGKTAVLVERLCQLVLKD-HISIDSILAMTFTKDAAAEMKARLLSKLKEQPK-T 77 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 D IL + +LET + TI +FC +I+Q + + I Sbjct: 78 DYILQQ----------------------MALLETAS---ISTIDSFCLSIVQNYYYKIPI 112 Query: 154 TSHFA--IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 + + A Q++ E A K + + L+ +LK F+ + +EDI+ I DI Sbjct: 113 SYTMSKQTASSAQTRIAFENAYKHAIQDLDLNAYTQLKMYFHSFGK--TEEDIQKYIEDI 170 Query: 212 IS 213 ++ Sbjct: 171 LA 172 >gi|154498367|ref|ZP_02036745.1| hypothetical protein BACCAP_02356 [Bacteroides capillosus ATCC 29799] gi|150272678|gb|EDM99856.1| hypothetical protein BACCAP_02356 [Bacteroides capillosus ATCC 29799] Length = 1206 Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 37/187 (19%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA AGSGKT +LV+R+L R+ L +T+TKAAAAE+ R++E Sbjct: 22 VSAAAGSGKTRVLVERLLGRVEHEGLDIDRFLVITYTKAAAAELRSRIVE---------- 71 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E+++ + P + + + L+ ++ T+H+FC ++++ ++ Sbjct: 72 -----ELSQRLARNPTDRHLRRQQTLVYKA-------QISTVHSFCAQLLRECGHMLDVN 119 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN 214 F + DE ++ +ML +E+ YE +I+ D D L+ + + Sbjct: 120 PDFRLCDEGEA------------GVLMLRALDEVMDRRYE--DITPDSDFAKLVDTMSAG 165 Query: 215 RTALKLI 221 R +L+ Sbjct: 166 RDDSRLM 172 >gi|313632207|gb|EFR99276.1| ATP-dependent nuclease subunit A [Listeria seeligeri FSL N1-067] Length = 1236 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/216 (26%), Positives = 92/216 (42%), Gaps = 56/216 (25%) Query: 24 QLLASDPTRSAW----------------VSANAGSGKTHILVQRVLRLLL---ANAHPST 64 QL+ P S W V+A AGSGKT +LV R++ L+ +N + Sbjct: 3 QLIPEKPNDSTWTDDQWKAIQADGENILVAAAAGSGKTAVLVTRIIEKLINEKSNWNVDE 62 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 LL +T T A+AAEM R+ L DE+ + P+ + + K +L Sbjct: 63 LLIVTFTNASAAEMKFRI------GKALEDEL---------AQDPDSAHLKKQVAML--- 104 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 + T+H+FC I+++ EA+I +F +LIE + S + +L+N Sbjct: 105 ----NYASISTLHSFCLEIIRKHYFEADIDPNF---------RLIEPIESSMIRDEVLEN 151 Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKL 220 E E I N+ D L+ +R+ +L Sbjct: 152 LLE------EAYSIENNNDFFHLVESFTGDRSDTEL 181 >gi|295396964|ref|ZP_06807086.1| ATP-dependent nuclease subunit A [Aerococcus viridans ATCC 11563] gi|294974817|gb|EFG50522.1| ATP-dependent nuclease subunit A [Aerococcus viridans ATCC 11563] Length = 1287 Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 20/177 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LVQR+L+ + LL +T T+ AA+EM R LE+ E Sbjct: 37 VSASAGSGKTSVLVQRILQKVRRGYGVDELLVVTFTEKAASEMKER-LEVAL------QE 89 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +++ E SD +H L I + P + TI AFC+ ++Q++ ++ Sbjct: 90 MINEE-----------SDADSRQHYLQQIAKLPQA-NISTIDAFCKQVIQRYYFLIDLDP 137 Query: 156 HFA-IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 + + DE ++ E +S ++ + N E + D+ I+ LI D+ Sbjct: 138 VYRLLTDETENMMHFENVWESLKEDLLAEGNPEYLRMANYFASDRKDDKIDRLIFDL 194 >gi|284043266|ref|YP_003393606.1| UvrD/REP helicase [Conexibacter woesei DSM 14684] gi|283947487|gb|ADB50231.1| UvrD/REP helicase [Conexibacter woesei DSM 14684] Length = 1184 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 31/148 (20%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSH 80 SEQ A + ++ANAGSGKT ++ +R +R +L T +L +T T+ AA+E+ Sbjct: 9 SEQRAAIEHAGGLLLTANAGSGKTSVMAERFVRAVLHEGVEVTRILAITFTEKAASELKE 68 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 RV A +P ++ ++ G V TIH FC Sbjct: 69 RVRRRFEALG-----------------EPERARATE-------------GAWVSTIHGFC 98 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKL 168 +++ PL A I F++ DE +++L Sbjct: 99 ARLLRTHPLAAGIDPRFSVLDEHGARQL 126 >gi|172056768|ref|YP_001813228.1| recombination helicase AddA [Exiguobacterium sibiricum 255-15] gi|251764524|sp|B1YKM8|ADDA_EXIS2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|171989289|gb|ACB60211.1| recombination helicase AddA [Exiguobacterium sibiricum 255-15] Length = 1183 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 39/187 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL 92 VSA AGSGKT +LV+R+ + ++ P T +L T T AAA EM RV+E I A Sbjct: 22 VSAAAGSGKTAVLVERLTQRVINQEDPLTADRILVATFTNAAAKEMKTRVIEAIEA---- 77 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 KI+ P+ + K R ++ ++ TIH+FC +I+++ Sbjct: 78 ----------KIK-VAPDDLYLKKQRQMM-------NRAQITTIHSFCLSILRENYYRIG 119 Query: 153 ITSHFAIADEEQ----SKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETL 207 + F IA+E + ++EE +S AS AFYE+++ ++D D + + Sbjct: 120 LDPAFRIAEEAELLLLQDDVLEEVFESFYASA--------DPAFYELIDSYTSDRDDQAM 171 Query: 208 ISDIISN 214 ++ +ISN Sbjct: 172 LT-LISN 177 >gi|315658704|ref|ZP_07911574.1| ATP-dependent nuclease subunit A [Staphylococcus lugdunensis M23590] gi|315496335|gb|EFU84660.1| ATP-dependent nuclease subunit A [Staphylococcus lugdunensis M23590] Length = 1216 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 31/182 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + V+A AGSGKT +LV+R++ R++ N LL +T T +A EM HRV + I + Sbjct: 24 QDVLVAAAAGSGKTAVLVERIIQRIIRDNVDVDRLLVVTFTNLSAREMKHRVEQRIQEAA 83 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 L D PN + + R I I + ++ T+H+FC ++QQ Sbjct: 84 -LED--------------PNNTHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDV 121 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE----ISNDEDIET 206 ++ +F + E ++ L+E+ TL + L F E+ E ND+D T Sbjct: 122 LDVDPNFRTSSEAENILLLEQTIDETLEHYY----DVLNSDFIELAEQLSKDRNDDDFRT 177 Query: 207 LI 208 +I Sbjct: 178 II 179 >gi|269838114|ref|YP_003320342.1| UvrD/REP helicase [Sphaerobacter thermophilus DSM 20745] gi|269787377|gb|ACZ39520.1| UvrD/REP helicase [Sphaerobacter thermophilus DSM 20745] Length = 1125 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 47/193 (24%), Positives = 92/193 (47%), Gaps = 23/193 (11%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVLEIITAW 89 R+ +V A AG+GKT +LV R++ +L N H + L+ +T T+ AAAE++ RV E Sbjct: 20 RNFFVEAGAGTGKTTVLVDRIVAIL-RNGHATVDELVVITFTRLAAAELATRVRE----- 73 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 +++ + + L + P +++TIHAF ++++ P+ Sbjct: 74 -------------RLEETRDTTESEEERARLEEALYALPRA-RIETIHAFAAGLLRERPV 119 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-EDIETLI 208 EA + F D+ + +EA + LA+++ + E +A + L D + ++ Sbjct: 120 EAGLDPGFEEMDDLSASLAFDEAYQDWLATLLNPEDGERPEAVWRALNRGLDLRHLREVV 179 Query: 209 SDIISNRTALKLI 221 + +R+ L L+ Sbjct: 180 EQVHHHRSLLPLV 192 >gi|289577484|ref|YP_003476111.1| recombination helicase AddA [Thermoanaerobacter italicus Ab9] gi|289527197|gb|ADD01549.1| recombination helicase AddA [Thermoanaerobacter italicus Ab9] Length = 1230 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 27/150 (18%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 T +QL + + V+A AGSGKT +LV+R++RL+ +P LL +T T AAA+ Sbjct: 6 THEQQLAINTRGNNLLVAAGAGSGKTAVLVERIIRLITDKENPVDIDRLLVVTFTNAAAS 65 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R I A I+K+ + P +S LL + TI Sbjct: 66 EMRER--------------IADALISKLD-QNPEDRRLSNQLTLL-------NKATITTI 103 Query: 137 HAFC-EAIMQQFPLEANITSHFAIADEEQS 165 H+FC E + F L ++ +F I D+ ++ Sbjct: 104 HSFCLEVVRNNFFL-IDLDPNFRIGDDTET 132 >gi|254974592|ref|ZP_05271064.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-66c26] gi|255091983|ref|ZP_05321461.1| ATP-dependent nuclease subunit A [Clostridium difficile CIP 107932] gi|255313717|ref|ZP_05355300.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-76w55] gi|255516399|ref|ZP_05384075.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-97b34] gi|255649498|ref|ZP_05396400.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-37x79] gi|260682665|ref|YP_003213950.1| ATP-dependent nuclease subunit A [Clostridium difficile CD196] gi|260686264|ref|YP_003217397.1| ATP-dependent nuclease subunit A [Clostridium difficile R20291] gi|260208828|emb|CBA61747.1| ATP-dependent nuclease subunit A [Clostridium difficile CD196] gi|260212280|emb|CBE03030.1| ATP-dependent nuclease subunit A [Clostridium difficile R20291] Length = 1275 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 29/180 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R+++++ + +P LL +T T AAA+EM R+ + I Sbjct: 23 VAAAAGSGKTAVLVERIIQMITSRENPIDIDKLLVVTFTNAAASEMRERIGDAI------ 76 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 GK +++ +K + +L + TIH+FC +++ N Sbjct: 77 -------------GKALDENPENKHLQNQLVLLNKSS---ITTIHSFCLDVIKSNFHRIN 120 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212 + +F I D+ + L +EA + + D EE + F ++E + + + DII Sbjct: 121 LDPNFRIGDQTECAILKQEA----IEEVFEDLYEERDEGFLNLVESYAERGGDKEVQDII 176 >gi|39935284|ref|NP_947560.1| ATP-dependent exodeoxyribonuclease subunit A [Rhodopseudomonas palustris CGA009] gi|39649136|emb|CAE27656.1| possible ATP-dependent exodeoxyribonuclease (subunit A) [Rhodopseudomonas palustris CGA009] Length = 1133 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 13/137 (9%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 RS V A AGSGKT ++ R+ +L P ++ +T T+ AA+E+ RV + + + Sbjct: 23 RSILVEAGAGSGKTAVMAGRIAAMLAEGIAPKSIAAVTFTELAASELLIRVRDFV---AD 79 Query: 92 LSDEILSAE--ITKIQGKKPNKS-DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 L+ + E I G PN S +++ A ++ I TIH FC+ +++ +P Sbjct: 80 LAAGTIPTELRIAFPDGLSPNHSANLAAAASVIDEI-------TCSTIHGFCQRLIKPYP 132 Query: 149 LEANITSHFAIADEEQS 165 +EA+I ++ D Q+ Sbjct: 133 VEADIDPGASVMDRNQA 149 >gi|34557616|ref|NP_907431.1| putative recombination protein RecB [Wolinella succinogenes DSM 1740] gi|34483333|emb|CAE10331.1| HELICASE [Wolinella succinogenes] Length = 905 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 20/137 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R L LL AHPS +L LT T+ AA EM R+ + + A + Sbjct: 9 LRASAGSGKTFALTLRYLALLFKGAHPSEILTLTFTRKAALEMKERITQALVALQQGEEN 68 Query: 96 -----ILSAEITK--IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 ++ A IT+ IQ K+ + L+ L++ TI AF +I+++F Sbjct: 69 PYLLGLVEAGITEEAIQEKRA---------EVYWRFLQA--DLRITTIDAFLHSIVRKFC 117 Query: 149 LEANITSHFAIA--DEE 163 I F IA DEE Sbjct: 118 WYIGIPHDFTIASVDEE 134 >gi|312874236|ref|ZP_07734270.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2052A-d] gi|311090306|gb|EFQ48716.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2052A-d] Length = 1206 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 41/238 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLK 132 +EM R+ I KI+ + N K ++K Sbjct: 61 SEMKLRIKNAIK--------------NKIKEQPDNLFLKQQLAKV-----------DIAN 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TI +FC ++++F N+ +F+I ++ L++E +N ++ F Sbjct: 96 ISTIDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDF 155 Query: 193 YEILEISNDEDIETLISDII---------SNRTAL--KLIFFFFSYLWRRKIIEKSLW 239 Y + D ++E S ++ N A +L FF+ + + II +LW Sbjct: 156 YN--NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211 >gi|294507833|ref|YP_003571891.1| ATP-dependent exoDNAse [Salinibacter ruber M8] gi|294344161|emb|CBH24939.1| ATP-dependent exoDNAse [Salinibacter ruber M8] Length = 1141 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 19/160 (11%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 L A +P + +V A AGSGKT LV R++ L+ + L +T T+ AA EMS R E Sbjct: 31 LSAFEPDTNFFVRAAAGSGKTTALVARMVALVRSGVPVEDLTAITFTRKAAGEMSKRFYE 90 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 E+ A+ T + + P + ++ A L + TIHAFC ++ Sbjct: 91 ----------ELRRAQ-TALPAEGPQRRRVTAA-------LRDAQQAFIGTIHAFCARLL 132 Query: 145 QQFPLEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLD 183 ++ P+ A++ F A ++ + ++L + A + L ++ D Sbjct: 133 RERPIAADLPPGFVAGLEDREERELRDRAWQDYLQTVRAD 172 >gi|83814136|ref|YP_445923.1| ATP-dependent DNA helicase [Salinibacter ruber DSM 13855] gi|83755530|gb|ABC43643.1| probable ATP-dependent DNA helicase [Salinibacter ruber DSM 13855] Length = 1114 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 19/160 (11%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 L A +P + +V A AGSGKT LV R++ L+ + L +T T+ AA EMS R E Sbjct: 4 LSAFEPDTNFFVRAAAGSGKTTALVARMVALVRSGVPVEDLTAITFTRKAAGEMSKRFYE 63 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 E+ A+ T + + P + ++ A L + TIHAFC ++ Sbjct: 64 ----------ELRRAQ-TALPAEGPQRRRVTAA-------LRDAQQAFIGTIHAFCARLL 105 Query: 145 QQFPLEANITSHF-AIADEEQSKKLIEEAKKSTLASIMLD 183 ++ P+ A++ F A ++ + ++L + A + L ++ D Sbjct: 106 RERPIAADLPPGFVAGLEDREERELRDRAWQDYLQTVRAD 145 >gi|331087018|ref|ZP_08336093.1| recombination helicase AddA [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409468|gb|EGG88911.1| recombination helicase AddA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 1229 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 25/195 (12%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 +S TK + + R+ VSA AGSGKT +LV+R++ L + P +L +T T+A Sbjct: 3 VSWTKEQAQVIHLRNRNILVSAAAGSGKTAVLVERIITRLTVDEPPIDVDQMLVVTFTEA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ + I K ++P + + L+ +V Sbjct: 63 AAAEMKERIRD---------------AIEKKLEEQPENVHLQRQATLI-------HNAQV 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+FC ++++ + ++ F IADE + K L ++ + L + + Sbjct: 101 TTIHSFCLSVIRDYFHMIDLDPGFRIADEGELKLLRQDVLEEVLENCYTAGEQSFLDCIE 160 Query: 194 EILEISNDEDIETLI 208 +D+ IE +I Sbjct: 161 SFAAGRDDKKIEEII 175 >gi|253574626|ref|ZP_04851966.1| recombination helicase AddA [Paenibacillus sp. oral taxon 786 str. D14] gi|251845672|gb|EES73680.1| recombination helicase AddA [Paenibacillus sp. oral taxon 786 str. D14] Length = 1341 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 25/145 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++R L P + LL T TKAAAAEM R+ E Sbjct: 31 VAAAAGSGKTAVLVERIIRKLTDREQPLSVDRLLVATFTKAAAAEMRGRITE-------- 82 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + K K P ++ +L G + T+H+FC ++Q++ Sbjct: 83 -------ALEKELAKDPGNEYLNHQLAML-------GRASITTLHSFCMEVIQRYYTLIP 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL 177 + F IA E ++ L +E + L Sbjct: 129 LDPGFRIASESETALLRQEVLEELL 153 >gi|289551202|ref|YP_003472106.1| ATP-dependent nuclease, subunit A [Staphylococcus lugdunensis HKU09-01] gi|289180734|gb|ADC87979.1| ATP-dependent nuclease, subunit A [Staphylococcus lugdunensis HKU09-01] Length = 1216 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 31/182 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + V+A AGSGKT +LV+R++ R++ N LL +T T +A EM HRV + I + Sbjct: 24 QDVLVAAAAGSGKTAVLVERIIQRIIRDNVDVDRLLVVTFTNLSAREMKHRVEQRIQEAA 83 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 L D PN + + R I I + ++ T+H+FC ++QQ Sbjct: 84 -LED--------------PNNTHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDV 121 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE----ISNDEDIET 206 ++ +F + E ++ L+E+ TL + L F E+ E ND+D T Sbjct: 122 LDVDPNFRTSSEAENILLLEQTIDETLEHYY----DVLNSDFIELAEQLSKDRNDDDFRT 177 Query: 207 LI 208 +I Sbjct: 178 II 179 >gi|282600070|ref|ZP_05972885.2| DNA helicase II [Providencia rustigianii DSM 4541] gi|282566938|gb|EFB72473.1| DNA helicase II [Providencia rustigianii DSM 4541] Length = 764 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 39/147 (26%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ L+ + NA P +++ +T T AAAEM HR+ Sbjct: 65 PRTNLLVLAGAGSGKTRVLVHRIAWLMSVENASPFSIMAVTFTNKAAAEMRHRI------ 118 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 HL+ T + GG+ + T H +++Q Sbjct: 119 -----------------------------NHLIGT---SEGGMWIGTFHGLAHRLLRQHY 146 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKS 175 L+AN+ F I D + +LI K+ Sbjct: 147 LDANLPQDFQILDSDDQYRLIRRLLKA 173 >gi|238763616|ref|ZP_04624576.1| DNA helicase II [Yersinia kristensenii ATCC 33638] gi|238698094|gb|EEP90851.1| DNA helicase II [Yersinia kristensenii ATCC 33638] Length = 672 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + NA P +++ +T Sbjct: 4 SDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 62 FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H +++ ++AN+ F I D + +L++ K+ Sbjct: 84 GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVKA 129 >gi|225174781|ref|ZP_03728779.1| recombination helicase AddA [Dethiobacter alkaliphilus AHT 1] gi|225169908|gb|EEG78704.1| recombination helicase AddA [Dethiobacter alkaliphilus AHT 1] Length = 1229 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 27/147 (18%) Query: 23 EQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEM 78 EQL A + T + VSA AG+GKT +LV+R++RLL +P LL +T T+AAAAEM Sbjct: 8 EQLEAIETTGCNLLVSAAAGAGKTAVLVERIIRLLCHEENPLDIDRLLVVTFTEAAAAEM 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R I +A KI + D+++ L+ G + T+H+ Sbjct: 68 RER--------------ISAAMEEKI--AHSGRGDLARQLSLV-------NGASISTLHS 104 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQS 165 FC I++++ ++ F +ADE ++ Sbjct: 105 FCLDIIRRYFYLLDMDPGFRVADEREA 131 >gi|205356088|ref|ZP_03222855.1| putative helicase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345931|gb|EDZ32567.1| putative helicase [Campylobacter jejuni subsp. jejuni CG8421] Length = 921 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + L+L A + +L LT TK AA EM R++E + Sbjct: 10 LEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKENKT 69 Query: 96 ILSAEITKIQGKKPNKSDM-----SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 E+ K+ GK +K ++ +K L T LK+ T AF I++ F L Sbjct: 70 SECNELCKLLGK--DKEELISLRDAKKEEFLRT------ELKISTFDAFFGKILRVFALN 121 Query: 151 ANITSHFAIADE 162 ++S F +++E Sbjct: 122 LGLSSDFTMSEE 133 >gi|238760176|ref|ZP_04621323.1| DNA helicase II [Yersinia aldovae ATCC 35236] gi|238701612|gb|EEP94182.1| DNA helicase II [Yersinia aldovae ATCC 35236] Length = 720 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + NA P +++ +T Sbjct: 4 SDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 62 FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H +++ ++AN+ F I D + +L++ K+ Sbjct: 84 GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVKA 129 >gi|315058935|gb|ADT73264.1| Helicase [Campylobacter jejuni subsp. jejuni S3] Length = 921 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + L+L A + +L LT TK AA EM R++E + Sbjct: 10 LEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKENKT 69 Query: 96 ILSAEITKIQGKKPNKSDM-----SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 E+ K+ GK +K ++ +K L T LK+ T AF I++ F L Sbjct: 70 SECNELCKLLGK--DKEELISLRDAKKEEFLRT------ELKISTFDAFFGKILRVFALN 121 Query: 151 ANITSHFAIADE 162 ++S F +++E Sbjct: 122 LGLSSDFTMSEE 133 >gi|312875638|ref|ZP_07735639.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2053A-b] gi|311088892|gb|EFQ47335.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2053A-b] Length = 1206 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 41/238 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLK 132 +EM R+ I KI+ + N K ++K Sbjct: 61 SEMKLRIKNAIK--------------NKIKEQPDNLFLKQQLAKV-----------DIAN 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TI +FC ++++F N+ +F+I ++ L++E +N ++ F Sbjct: 96 ISTIDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDF 155 Query: 193 YEILEISNDEDIETLISDII---------SNRTAL--KLIFFFFSYLWRRKIIEKSLW 239 Y + D ++E S ++ N A +L FF+ + + II +LW Sbjct: 156 YN--NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211 >gi|259500614|ref|ZP_05743516.1| ATP-dependent exonuclease subunit A [Lactobacillus iners DSM 13335] gi|302191303|ref|ZP_07267557.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus iners AB-1] gi|259167998|gb|EEW52493.1| ATP-dependent exonuclease subunit A [Lactobacillus iners DSM 13335] Length = 1206 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 41/238 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLK 132 +EM R+ I KI+ + N K ++K Sbjct: 61 SEMKLRIKNAIK--------------NKIKEQPDNLFLKQQLAKV-----------DIAN 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TI +FC ++++F N+ +F+I ++ L++E +N ++ F Sbjct: 96 ISTIDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDF 155 Query: 193 YEILEISNDEDIETLISDII---------SNRTAL--KLIFFFFSYLWRRKIIEKSLW 239 Y + D ++E S ++ N A +L FF+ + + II +LW Sbjct: 156 YN--NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211 >gi|170026218|ref|YP_001722723.1| DNA-dependent helicase II [Yersinia pseudotuberculosis YPIII] gi|169752752|gb|ACA70270.1| DNA helicase II [Yersinia pseudotuberculosis YPIII] Length = 720 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D +++ + + + A P + V A AGSGKT +LV R+ LL + NA P +++ +T Sbjct: 4 SDLLDSLNEKQRDAVAA--PRGNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIISVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 62 FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H +++ L+AN+ F I D + +L++ K+ Sbjct: 84 GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQLRLLKRLVKA 129 >gi|22124304|ref|NP_667727.1| DNA-dependent helicase II [Yersinia pestis KIM 10] gi|45442958|ref|NP_994497.1| DNA-dependent helicase II [Yersinia pestis biovar Microtus str. 91001] gi|21957076|gb|AAM83978.1|AE013639_7 DNA-dependent ATPase I and helicase II [Yersinia pestis KIM 10] gi|45437825|gb|AAS63374.1| DNA helicase II [Yersinia pestis biovar Microtus str. 91001] Length = 722 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D +++ + + + A P + V A AGSGKT +LV R+ LL + NA P +++ +T Sbjct: 6 SDLLDSLNEKQRDAVAA--PRGNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIISVT 63 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 64 FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 85 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H +++ L+AN+ F I D + +L++ K+ Sbjct: 86 GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQLRLLKRLVKA 131 >gi|162418460|ref|YP_001605138.1| DNA-dependent helicase II [Yersinia pestis Angola] gi|162351275|gb|ABX85223.1| DNA helicase II [Yersinia pestis Angola] Length = 720 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D +++ + + + A P + V A AGSGKT +LV R+ LL + NA P +++ +T Sbjct: 4 SDLLDSLNEKQRDAVAA--PRGNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIISVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 62 FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H +++ L+AN+ F I D + +L++ K+ Sbjct: 84 GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQLRLLKRLVKA 129 >gi|325912158|ref|ZP_08174556.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 143-D] gi|325476108|gb|EGC79276.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 143-D] Length = 1206 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 41/238 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLK 132 +EM R+ I KI+ + N K ++K Sbjct: 61 SEMKLRIKNAIK--------------NKIKEQPDNLFLKQQLAKV-----------DIAN 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TI +FC ++++F N+ +F+I ++ L++E +N ++ F Sbjct: 96 ISTIDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDF 155 Query: 193 YEILEISNDEDIETLISDII---------SNRTAL--KLIFFFFSYLWRRKIIEKSLW 239 Y + D ++E S ++ N A +L FF+ + + II +LW Sbjct: 156 YN--NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211 >gi|157368435|ref|YP_001476424.1| DNA-dependent helicase II [Serratia proteamaculans 568] gi|157320199|gb|ABV39296.1| DNA helicase II [Serratia proteamaculans 568] Length = 723 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 7 SDLLDSLNEKQREAVAA--PRGNLLVLAGAGSGKTRVLVHRIAWLLAVENCSPYSIMAVT 64 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 65 FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 86 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H +++ L+AN+ F I D + +L++ K+ Sbjct: 87 GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQFRLLKRIVKA 132 >gi|51594549|ref|YP_068740.1| DNA-dependent helicase II [Yersinia pseudotuberculosis IP 32953] gi|108806179|ref|YP_650095.1| DNA-dependent helicase II [Yersinia pestis Antiqua] gi|108810289|ref|YP_646056.1| DNA-dependent helicase II [Yersinia pestis Nepal516] gi|145600708|ref|YP_001164784.1| DNA-dependent helicase II [Yersinia pestis Pestoides F] gi|153947747|ref|YP_001399206.1| DNA-dependent helicase II [Yersinia pseudotuberculosis IP 31758] gi|153997103|ref|ZP_02022236.1| DNA helicase II [Yersinia pestis CA88-4125] gi|165926252|ref|ZP_02222084.1| DNA helicase II [Yersinia pestis biovar Orientalis str. F1991016] gi|165939149|ref|ZP_02227700.1| DNA helicase II [Yersinia pestis biovar Orientalis str. IP275] gi|166011668|ref|ZP_02232566.1| DNA helicase II [Yersinia pestis biovar Antiqua str. E1979001] gi|166213517|ref|ZP_02239552.1| DNA helicase II [Yersinia pestis biovar Antiqua str. B42003004] gi|167401880|ref|ZP_02307368.1| DNA helicase II [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420892|ref|ZP_02312645.1| DNA helicase II [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426213|ref|ZP_02317966.1| DNA helicase II [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468817|ref|ZP_02333521.1| DNA helicase II [Yersinia pestis FV-1] gi|186893549|ref|YP_001870661.1| DNA-dependent helicase II [Yersinia pseudotuberculosis PB1/+] gi|218930844|ref|YP_002348719.1| DNA-dependent helicase II [Yersinia pestis CO92] gi|229837171|ref|ZP_04457336.1| DNA helicase II [Yersinia pestis Pestoides A] gi|229839531|ref|ZP_04459690.1| DNA helicase II [Yersinia pestis biovar Orientalis str. PEXU2] gi|229900094|ref|ZP_04515231.1| DNA helicase II [Yersinia pestis biovar Orientalis str. India 195] gi|229900460|ref|ZP_04515589.1| DNA helicase II [Yersinia pestis Nepal516] gi|270488814|ref|ZP_06205888.1| DNA helicase II [Yersinia pestis KIM D27] gi|294505505|ref|YP_003569567.1| DNA helicase II [Yersinia pestis Z176003] gi|51587831|emb|CAH19434.1| DNA helicase II [Yersinia pseudotuberculosis IP 32953] gi|108773937|gb|ABG16456.1| ATP-dependent DNA helicase UvrD [Yersinia pestis Nepal516] gi|108778092|gb|ABG12150.1| ATP-dependent DNA helicase UvrD [Yersinia pestis Antiqua] gi|115349455|emb|CAL22428.1| DNA helicase II [Yersinia pestis CO92] gi|145212404|gb|ABP41811.1| ATP-dependent DNA helicase UvrD [Yersinia pestis Pestoides F] gi|149289409|gb|EDM39487.1| DNA helicase II [Yersinia pestis CA88-4125] gi|152959242|gb|ABS46703.1| DNA helicase II [Yersinia pseudotuberculosis IP 31758] gi|165912922|gb|EDR31548.1| DNA helicase II [Yersinia pestis biovar Orientalis str. IP275] gi|165921776|gb|EDR38973.1| DNA helicase II [Yersinia pestis biovar Orientalis str. F1991016] gi|165989437|gb|EDR41738.1| DNA helicase II [Yersinia pestis biovar Antiqua str. E1979001] gi|166205190|gb|EDR49670.1| DNA helicase II [Yersinia pestis biovar Antiqua str. B42003004] gi|166961021|gb|EDR57042.1| DNA helicase II [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048773|gb|EDR60181.1| DNA helicase II [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054732|gb|EDR64536.1| DNA helicase II [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186696575|gb|ACC87204.1| DNA helicase II [Yersinia pseudotuberculosis PB1/+] gi|229682479|gb|EEO78566.1| DNA helicase II [Yersinia pestis Nepal516] gi|229686874|gb|EEO78953.1| DNA helicase II [Yersinia pestis biovar Orientalis str. India 195] gi|229695897|gb|EEO85944.1| DNA helicase II [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706114|gb|EEO92123.1| DNA helicase II [Yersinia pestis Pestoides A] gi|262363571|gb|ACY60292.1| DNA helicase II [Yersinia pestis D106004] gi|262367499|gb|ACY64056.1| DNA helicase II [Yersinia pestis D182038] gi|270337318|gb|EFA48095.1| DNA helicase II [Yersinia pestis KIM D27] gi|294355964|gb|ADE66305.1| DNA helicase II [Yersinia pestis Z176003] gi|320013561|gb|ADV97132.1| DNA helicase II [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 720 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D +++ + + + A P + V A AGSGKT +LV R+ LL + NA P +++ +T Sbjct: 4 SDLLDSLNEKQRDAVAA--PRGNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIISVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 62 FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H +++ L+AN+ F I D + +L++ K+ Sbjct: 84 GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQLRLLKRLVKA 129 >gi|317179739|dbj|BAJ57527.1| helicase [Helicobacter pylori F30] Length = 949 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 12/161 (7%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI--ITAWSHLS 93 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ I +L Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQKENLE 69 Query: 94 DEILSAEITKIQGKKPNKSDM------SKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 DE + I + K + ++A+ + L +++ TI AF ++I+++F Sbjct: 70 DEKEKEKSQNILKELEEKYRLNPSFVQNRAQKIYQRFLNAE--IRISTIDAFFQSILRKF 127 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 ++++F + E +K ++ +S L+++ + EEL Sbjct: 128 CWFVGLSANFEV--NEDTKAHQQQLNESFLSALNGEQLEEL 166 >gi|304317472|ref|YP_003852617.1| UvrD/REP helicase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778974|gb|ADL69533.1| UvrD/REP helicase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 1088 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 28/147 (19%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP----STLLCLTHTKAAAAEM 78 EQL A D +++ + A AGSGKT +L +R ++LL N P ++ +T T+ AA+EM Sbjct: 21 EQLKALDISKNIALKAGAGSGKTRVLTKRYIKLL--NDIPEIKIDNIVAITFTRKAASEM 78 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + I + E K + R+ L + TIH Sbjct: 79 KDRIRKEIEVMCKVDSE---------------KEKWMEFRNSL-------SFANIDTIHG 116 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQS 165 FCE I++ +A + F I DE +S Sbjct: 117 FCEKIIRDNFADAGVDPLFTIIDEAES 143 >gi|188528332|ref|YP_001911019.1| putative recombination protein RecB [Helicobacter pylori Shi470] gi|188144572|gb|ACD48989.1| helicase [Helicobacter pylori Shi470] Length = 949 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 19/165 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + L E Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGG----------LKVQTIHAFCEAIMQ 145 L +E K + + K K R L ++++ +++ TI AF ++I++ Sbjct: 67 NLESEKEKEKSQNILKELEEKYR-LNPSLVQNSAQKIYQRFLNAEMRISTIDAFFQSILR 125 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 +F ++++F + E +K ++ S L+++ NNE+L++ Sbjct: 126 KFCWFVGLSANFEV--NEDTKVHQQQLNASFLSAL---NNEQLEE 165 >gi|86149295|ref|ZP_01067526.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152901|ref|ZP_01071106.1| putative helicase [Campylobacter jejuni subsp. jejuni HB93-13] gi|88596029|ref|ZP_01099266.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni 84-25] gi|85840077|gb|EAQ57335.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni CF93-6] gi|85843786|gb|EAQ60996.1| putative helicase [Campylobacter jejuni subsp. jejuni HB93-13] gi|88190870|gb|EAQ94842.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni 84-25] gi|284926688|gb|ADC29040.1| putative recombination protein RecB [Campylobacter jejuni subsp. jejuni IA3902] gi|315930547|gb|EFV09587.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp. jejuni 305] Length = 921 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + L+L A + +L LT TK AA EM R++E + Sbjct: 10 LEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKENKT 69 Query: 96 ILSAEITKIQGKKPNKSDM-----SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 E+ K+ GK +K ++ +K L T LK+ T AF I++ F L Sbjct: 70 SECNELCKLLGK--DKEELISLRDAKKEEFLRT------ELKISTFDAFFGKILRVFALN 121 Query: 151 ANITSHFAIADE 162 ++S F +++E Sbjct: 122 LGLSSDFTMSEE 133 >gi|238793575|ref|ZP_04637199.1| DNA helicase II [Yersinia intermedia ATCC 29909] gi|238727165|gb|EEQ18695.1| DNA helicase II [Yersinia intermedia ATCC 29909] Length = 720 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 45/177 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + NA P +++ +T Sbjct: 4 SDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 62 FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G+ + T H +++ ++AN+ F I D + +L+ K + ++ LD+ + Sbjct: 84 GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLL----KRLVKALNLDDKQ 136 >gi|134103111|ref|YP_001108772.1| putative ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338] gi|291003946|ref|ZP_06561919.1| putative ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338] gi|133915734|emb|CAM05847.1| putative ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338] Length = 873 Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 39/156 (25%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 DL++ +Q A + + S V A AGSGKT +L R+ LL HP ++ +T T Sbjct: 29 DLLAGLNPQQRDAVEHSGSPLLVVAGAGSGKTRVLTNRIAYLLARGVHPGQIMAITFTNK 88 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM RV +++ G++ N + V Sbjct: 89 AAAEMKERVADLV-------------------GRRAN-------------------AMWV 110 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T H+ C ++++ ++S+F+I D + S++LI Sbjct: 111 STFHSMCVRVLRREAKTLGMSSNFSIYDADDSRRLI 146 >gi|297380712|gb|ADI35599.1| helicase [Helicobacter pylori v225d] Length = 949 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 15/163 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI--ITAWSHLS 93 + A+AGSGKT L R L LL A+P+ +L LT TK A AEM R+L+ I +L Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPNEILTLTFTKKATAEMKERILDYLKILQKENLE 69 Query: 94 DEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 DE + I + K +S A+ + L +++ TI AF ++I+++F Sbjct: 70 DEKEKEKSQNILKELEEKYQLSPSFVQNSAQKIYQRFLNAE--IRISTIDAFFQSILRKF 127 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 ++++F + E +K ++ S L+++ NNE+L++ Sbjct: 128 CWFVGLSANFEV--NEDTKAHQQQLNASFLSAL---NNEQLEE 165 >gi|123440590|ref|YP_001004584.1| DNA-dependent helicase II [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087551|emb|CAL10332.1| DNA helicase II [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 720 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + NA P +++ +T Sbjct: 4 SDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 62 FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H +++ ++AN+ F I D + +L++ K+ Sbjct: 84 GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVKA 129 >gi|325912627|ref|ZP_08175010.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 60-B] gi|325478048|gb|EGC81177.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 60-B] Length = 1206 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 41/238 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLK 132 +EM R+ I KI+ + N K ++K Sbjct: 61 SEMKLRIKNAIK--------------NKIKEQPDNLFLKQQLAKV-----------DIAN 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TI +FC ++++F N+ +F+I ++ L++E +N ++ F Sbjct: 96 ISTIDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDF 155 Query: 193 YEILEISNDEDIETLISDII---------SNRTAL--KLIFFFFSYLWRRKIIEKSLW 239 Y + D ++E S ++ N A +L FF+ + + II +LW Sbjct: 156 YN--NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211 >gi|332159820|ref|YP_004296397.1| DNA-dependent helicase II [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607637|emb|CBY29135.1| ATP-dependent DNA helicase UvrD/PcrA [Yersinia enterocolitica subsp. palearctica Y11] gi|325664050|gb|ADZ40694.1| DNA-dependent helicase II [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862567|emb|CBX72721.1| DNA helicase II [Yersinia enterocolitica W22703] Length = 720 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + NA P +++ +T Sbjct: 4 SDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 62 FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H +++ ++AN+ F I D + +L++ K+ Sbjct: 84 GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVKA 129 >gi|283476681|emb|CAY72510.1| DNA helicase II [Erwinia pyrifoliae DSM 12163] Length = 723 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 7 SDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMGVENCSPHSIMAVT 64 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ ++I + G Sbjct: 65 FTNKAAAEMRHRIEQLIGT--------------------------------------SQG 86 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H +++ L+AN+ F I D E +L++ K+ Sbjct: 87 GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLKRLIKA 132 >gi|57238504|ref|YP_179635.1| ATP-dependent DNA helicase UvrD [Campylobacter jejuni RM1221] gi|218563082|ref|YP_002344861.1| putative recombination protein RecB [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|57167308|gb|AAW36087.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni RM1221] gi|112360788|emb|CAL35588.1| putative helicase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315927429|gb|EFV06767.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 921 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + L+L A + +L LT TK AA EM R++E + Sbjct: 10 LEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKENKT 69 Query: 96 ILSAEITKIQGKKPNKSDM-----SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 E+ K+ GK +K ++ +K L T LK+ T AF I++ F L Sbjct: 70 SECNELCKLLGK--DKEELISLRDAKKEEFLRT------ELKISTFDAFFGKILRVFALN 121 Query: 151 ANITSHFAIADE 162 ++S F +++E Sbjct: 122 LGLSSDFTMSEE 133 >gi|121612796|ref|YP_001001130.1| putative recombination protein RecB [Campylobacter jejuni subsp. jejuni 81-176] gi|167006023|ref|ZP_02271781.1| ATP-dependent DNA helicase, UvrD/REP family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|87249602|gb|EAQ72561.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni 81-176] Length = 921 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 13/132 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + L+L A + +L LT TK AA EM R++E + Sbjct: 10 LEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKENKT 69 Query: 96 ILSAEITKIQGKKPNKSDM-----SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 E+ K+ GK +K ++ +K L T LK+ T AF I++ F L Sbjct: 70 SECNELCKLLGK--DKEELISLRDAKKEEFLRT------ELKISTFDAFFGKILRVFALN 121 Query: 151 ANITSHFAIADE 162 ++S F +++E Sbjct: 122 LGLSSDFTMSEE 133 >gi|315653554|ref|ZP_07906474.1| ATP-dependent exonuclease subunit A [Lactobacillus iners ATCC 55195] gi|315488916|gb|EFU78558.1| ATP-dependent exonuclease subunit A [Lactobacillus iners ATCC 55195] Length = 428 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 35/235 (14%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ I KI+ + N L L + T Sbjct: 61 SEMKLRIKNAIR--------------NKIKEQPDN--------LFLKQQLAKVDIANIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++++F N+ +F+I ++ L++E +N ++ FY Sbjct: 99 IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157 Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239 + D ++E S ++ N A +L FF+ + + II +LW Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211 >gi|308183694|ref|YP_003927821.1| putative recombination protein RecB [Helicobacter pylori PeCan4] gi|308065879|gb|ADO07771.1| putative recombination protein RecB [Helicobacter pylori PeCan4] Length = 945 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 21/165 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + L E Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGG----------LKVQTIHAFCEAIMQ 145 L E K Q ++ + HL +++ +++ TI AF ++I++ Sbjct: 67 NLENEKEKSQNI---LKELEEKYHLNPDLVQNSAQKIYQRFLNAEIRISTIDAFFQSILR 123 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 +F ++++F + E +K ++ + L+++ NNE+L++ Sbjct: 124 KFCWFVGLSANFEV--NEDTKAHQQQLNEGFLSAL---NNEQLEE 163 >gi|15646160|ref|NP_208344.1| putative recombination protein RecB [Helicobacter pylori 26695] gi|2314736|gb|AAD08593.1| helicase [Helicobacter pylori 26695] Length = 945 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 16/137 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + L E Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQQE 66 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGG----------LKVQTIHAFCEAIMQ 145 L E K Q ++ + HL ++++ +++ TI AF ++I++ Sbjct: 67 NLENEKEKSQNI---LKELEEKYHLDPSLVQNSAPKIYQRFLNAEIRISTIDAFFQSILR 123 Query: 146 QFPLEANITSHFAIADE 162 +F ++++F + ++ Sbjct: 124 KFCWFVGLSANFEVNED 140 >gi|309806227|ref|ZP_07700241.1| UvrD/REP helicase [Lactobacillus iners LactinV 03V1-b] gi|308167374|gb|EFO69539.1| UvrD/REP helicase [Lactobacillus iners LactinV 03V1-b] Length = 428 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 35/235 (14%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ I KI+ + N L L + T Sbjct: 61 SEMKLRIKNAIK--------------NKIKEQPDN--------LFLKQQLAKVDIANIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++++F N+ +F+I ++ L++E +N ++ FY Sbjct: 99 IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157 Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239 + D ++E S ++ N A +L FF+ + + II +LW Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211 >gi|153938269|ref|YP_001389808.1| recombination helicase AddA [Clostridium botulinum F str. Langeland] gi|251764514|sp|A7GAJ8|ADDA_CLOBL RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|152934165|gb|ABS39663.1| recombination helicase AddA [Clostridium botulinum F str. Langeland] gi|295317895|gb|ADF98272.1| recombination helicase AddA [Clostridium botulinum F str. 230613] Length = 1279 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 25/140 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V A AG+GKT +LVQR++ +L P LL +T T AAAAEM R+ + I S Sbjct: 23 VVAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAAAEMRERIGDAI---SKG 79 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 DE +++ + Q NKS+ + TIH+FC +++ Sbjct: 80 LDEDPESKVLRKQLTLLNKSN-------------------IMTIHSFCLQVIKNNFHTME 120 Query: 153 ITSHFAIADEEQSKKLIEEA 172 I +F I DE + + +EA Sbjct: 121 IDPNFRICDETEGILMKQEA 140 >gi|259906888|ref|YP_002647244.1| DNA-dependent helicase II [Erwinia pyrifoliae Ep1/96] gi|224962510|emb|CAX53965.1| DNA helicase II [Erwinia pyrifoliae Ep1/96] Length = 720 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMGVENCSPHSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ ++I + G Sbjct: 62 FTNKAAAEMRHRIEQLIGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ + T H +++ L+AN+ F I D E +L++ Sbjct: 84 GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLK 124 >gi|188532376|ref|YP_001906173.1| DNA-dependent helicase II [Erwinia tasmaniensis Et1/99] gi|188027418|emb|CAO95265.1| DNA helicase II [Erwinia tasmaniensis Et1/99] Length = 720 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMAVENCSPHSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ ++I + G Sbjct: 62 FTNKAAAEMRHRIEQLIGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ + T H +++ L+AN+ F I D E +L++ Sbjct: 84 GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLK 124 >gi|154249408|ref|YP_001410233.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1] gi|154153344|gb|ABS60576.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1] Length = 656 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 45/179 (25%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 D + SEQ A + + V A GSGKT ++ ++ LLL PS +L +T T+A Sbjct: 23 DFFKELDSEQRRAVMESNGKSVVIAGPGSGKTRVITYKIAYLLLNGVMPSEILLVTFTRA 82 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R +I+T K + SDM Sbjct: 83 AAREMIERA-QIVT--------------------KKDLSDMMAG---------------- 105 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 T H C +++++ + S+F I DEE +K L++ A+ + S +++ KAF Sbjct: 106 -TFHHVCNLLLRKYGSSIGLKSNFTILDEEDAKDLMKIARSRYVTS------KQMNKAF 157 >gi|238789384|ref|ZP_04633170.1| DNA helicase II [Yersinia frederiksenii ATCC 33641] gi|238722527|gb|EEQ14181.1| DNA helicase II [Yersinia frederiksenii ATCC 33641] Length = 720 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + NA P +++ +T Sbjct: 4 SDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 62 FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H +++ ++AN+ F I D + +L++ K+ Sbjct: 84 GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVKA 129 >gi|317011772|gb|ADU85519.1| putative recombination protein RecB [Helicobacter pylori SouthAfrica7] Length = 949 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 9/155 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE---IITAWSHL 92 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ I+ + Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQKENSE 69 Query: 93 SDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 +++ S I K +K N + A+ + L +K+ TI AF ++I+++F Sbjct: 70 NEKEKSQNILKELEEKYNLNPSLVQDNAKKIYQRFLNAE--IKISTIDAFFQSILRKFCW 127 Query: 150 EANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLD 183 ++++F + D E ++ + E+ S L S L+ Sbjct: 128 FVGLSANFEVNEDTEAHQQQLNESFLSALNSEQLE 162 >gi|310766136|gb|ADP11086.1| DNA helicase II [Erwinia sp. Ejp617] Length = 720 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMGVENCSPHSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ ++I + G Sbjct: 62 FTNKAAAEMRHRIEQLIGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ + T H +++ L+AN+ F I D E +L++ Sbjct: 84 GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLK 124 >gi|312898123|ref|ZP_07757515.1| ATP-dependent nuclease subunit A [Megasphaera micronuciformis F0359] gi|310620791|gb|EFQ04359.1| ATP-dependent nuclease subunit A [Megasphaera micronuciformis F0359] Length = 1220 Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 47/180 (26%), Positives = 89/180 (49%), Gaps = 25/180 (13%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 +D ++ T++++ + ++ +SA AGSGKT +LV+R++R L+ +P + ++ +T Sbjct: 2 VDKMAWTEAQEKAITSRNQNLLLSAAAGSGKTAVLVERIIRRLIDVDNPTDITEIMVVTF 61 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 TKAAA EM R+ + + DE LSA + + + + + AR Sbjct: 62 TKAAAGEMRERIGGALLKAAE--DETLSAAVR--ESARRQAALLPSAR------------ 105 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + T HAFC+ +++ ++ F IA E+ +E K+S + L E+ +K Sbjct: 106 --ISTFHAFCQYVLRTRFYTIDLDPQFTIAGTEE----LELLKQSVWDDVALSYYEDEEK 159 >gi|298737172|ref|YP_003729702.1| putative ATP-dependent helicase [Helicobacter pylori B8] gi|298356366|emb|CBI67238.1| putative ATP-dependent helicase [Helicobacter pylori B8] Length = 945 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 17/163 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + L E Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66 Query: 96 ILSAEITKIQG-----KKPNKSDMSKARHLLITILET--PGGLKVQTIHAFCEAIMQQFP 148 L E K Q ++ D S R+ I + +++ TI AF ++I+++F Sbjct: 67 NLENEKEKSQNILKELEEKYHLDPSLVRNSAPKIYQRFLNAEVRISTIDAFFQSILRKFC 126 Query: 149 LEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 ++++F + D + ++ + E S L NNE+L++ Sbjct: 127 WFVGLSANFEVNEDTKVHQRQLNEGFLSAL------NNEQLEE 163 >gi|169335596|ref|ZP_02862789.1| hypothetical protein ANASTE_02011 [Anaerofustis stercorihominis DSM 17244] gi|169258334|gb|EDS72300.1| hypothetical protein ANASTE_02011 [Anaerofustis stercorihominis DSM 17244] Length = 1171 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 26/156 (16%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78 TKS+ + ++ +SA AG GKT IL R++RL+L L +T T AAA+ M Sbjct: 4 TKSQSDAINTDNKNLLISAGAGCGKTAILTNRIIRLMLEEKTDIDKFLVVTFTNAAASGM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL--ITILETPGGLKVQTI 136 ++ +++ + KI+ K +K R+L I+ LE + T+ Sbjct: 64 KEKIRKLLYS--------------KIKEKNNDK------RYLFDQISNLEKAN---ISTL 100 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 H+FC ++++++ ++ F I D + L++EA Sbjct: 101 HSFCISVIREYYHLVDVDPAFKIIDSTNANILMDEA 136 >gi|307638220|gb|ADN80670.1| putative ATP-dependent helicase [Helicobacter pylori 908] gi|325996814|gb|ADZ52219.1| helicase [Helicobacter pylori 2018] gi|325998406|gb|ADZ50614.1| putative ATP-dependent helicase [Helicobacter pylori 2017] Length = 946 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 23/162 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + + Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYL--------K 61 Query: 96 ILSAEITKIQGKKPNKS---DMSKARHLLITILETPGG----------LKVQTIHAFCEA 142 IL E + GK+ +++ ++ + HL +++ +++ TI AF ++ Sbjct: 62 ILQKENLE-SGKEKSQNILKELEEKYHLDPSLVRNSAQKIYQRFLNAEIRISTIDAFFQS 120 Query: 143 IMQQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLD 183 I+++F ++++F + D E ++ + E S L S L+ Sbjct: 121 ILRKFCWFVGLSANFEVNEDTEAHQRQLNEGFLSALNSEQLE 162 >gi|118444179|ref|YP_877319.1| ATP-dependent nuclease subunit A [Clostridium novyi NT] gi|251764519|sp|A0PY67|ADDA_CLONN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|118134635|gb|ABK61679.1| ATP-dependent nuclease subunit A [Clostridium novyi NT] Length = 1236 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 64/134 (47%), Gaps = 27/134 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 VSA AGSGKT +LV+R+++++ +P LL +T T AAA+EM R Sbjct: 23 VSAAAGSGKTAVLVERIIKMITDIKNPVDIDRLLVVTFTNAAASEMKER----------- 71 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151 I K GK+ K SK +T+L + TIH+FC E I F Sbjct: 72 --------IGKAIGKELTKHPKSKQLQRQLTLLNRAS---ITTIHSFCLETIRNNFHY-I 119 Query: 152 NITSHFAIADEEQS 165 ++ +F I DE ++ Sbjct: 120 DLDPNFRIGDETET 133 >gi|309809850|ref|ZP_07703700.1| UvrD/REP helicase [Lactobacillus iners SPIN 2503V10-D] gi|308169802|gb|EFO71845.1| UvrD/REP helicase [Lactobacillus iners SPIN 2503V10-D] Length = 431 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 35/235 (14%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ I KI+ + N L L + T Sbjct: 61 SEMKLRIKNAIK--------------NKIKEQPDN--------LFLKQQLAKVDIANIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++++F N+ +F+I ++ L++E +N ++ FY Sbjct: 99 IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157 Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239 + D ++E S ++ N A +L FF+ + + II +LW Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211 >gi|238750684|ref|ZP_04612183.1| DNA helicase II [Yersinia rohdei ATCC 43380] gi|238711074|gb|EEQ03293.1| DNA helicase II [Yersinia rohdei ATCC 43380] Length = 720 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + NA P +++ +T Sbjct: 4 SDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIISVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 62 FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H +++ ++AN+ F I D + +L++ K+ Sbjct: 84 GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVKA 129 >gi|291523612|emb|CBK81905.1| recombination helicase AddA, Firmicutes type [Coprococcus catus GD/7] Length = 1228 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 37/164 (22%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAW 89 S VSA AGSGKT +LV+R++RLL HP LL +T T AAAAEM R+ Sbjct: 19 SVLVSAAAGSGKTAVLVERLIRLLTDEKHPVDIERLLVVTFTNAAAAEMRERI------G 72 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 L ++L ++P+ + + + LL ++ TIH+ C Sbjct: 73 RGLDQKLL---------EEPDHTAWIRQKLLLPCA-------QISTIHSLC--------- 107 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 I HF + D + S +L +EA+ L S D E++ + +Y Sbjct: 108 LKTIREHFEVLDLDPSFRLGDEAELKLLKS---DVAEDVMETYY 148 >gi|239625645|ref|ZP_04668676.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519875|gb|EEQ59741.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1326 Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 25/195 (12%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + T+ +Q + R+ VSA AGSGKT +LV+R+++++ HP LL +T T A Sbjct: 3 VKWTEKQQQVIDSRNRNLLVSAAAGSGKTAVLVERIIQMISGGDHPLDIDQLLVMTFTNA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ A + K + P HL + P + + Sbjct: 63 AAAEMRERI---------------GAAVEKKLKEHPED------EHLWLQAALIPQAM-I 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TI +FC I++ +I F I DE + L + L + + +E Sbjct: 101 TTIDSFCLNIIRNHFNSLDIDPSFRIGDEGELSLLRGDVMGEMLEACYEEGDEAFAGFVE 160 Query: 194 EILEISNDEDIETLI 208 +D+ IE +I Sbjct: 161 HFGRGKSDKGIEDVI 175 >gi|52079565|ref|YP_078356.1| ATP-dependent deoxyribonuclease subunit A [Bacillus licheniformis ATCC 14580] gi|52784929|ref|YP_090758.1| AddA [Bacillus licheniformis ATCC 14580] gi|81609244|sp|Q65LJ9|ADDA_BACLD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|52002776|gb|AAU22718.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus licheniformis ATCC 14580] gi|52347431|gb|AAU40065.1| AddA [Bacillus licheniformis ATCC 14580] Length = 1230 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 35/172 (20%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R++R + P LL +T T A+AAEM HR+ Sbjct: 24 RDILVAAAAGSGKTAVLVERIIRKITDQERPVDVDRLLVVTFTNASAAEMKHRI------ 77 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 E L E+ + N + R L + + T+H+FC +++++ Sbjct: 78 -----GEALEKELAE------NPGSLHLRRQLALL-----NKASISTLHSFCLQVIRKYY 121 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK---AFYEILE 197 ++ F IAD+ + + L +E EE KK AF+E+++ Sbjct: 122 YLIDVDPAFRIADQTEGELLGDEVLDELF-------EEEYKKGNPAFFELVD 166 >gi|319646646|ref|ZP_08000875.1| AddA protein [Bacillus sp. BT1B_CT2] gi|317391234|gb|EFV72032.1| AddA protein [Bacillus sp. BT1B_CT2] Length = 1230 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 35/172 (20%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R++R + P LL +T T A+AAEM HR+ Sbjct: 24 RDILVAAAAGSGKTAVLVERIIRKITDQERPVDVDRLLVVTFTNASAAEMKHRI------ 77 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 E L E+ + N + R L + + T+H+FC +++++ Sbjct: 78 -----GEALEKELAE------NPGSLHLRRQLALL-----NKASISTLHSFCLQVIRKYY 121 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK---AFYEILE 197 ++ F IAD+ + + L +E EE KK AF+E+++ Sbjct: 122 YLIDVDPAFRIADQTEGELLGDEVLDELF-------EEEYKKGNPAFFELVD 166 >gi|300774389|ref|ZP_07084253.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300507033|gb|EFK38167.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 1046 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 24/185 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLL--ANAHPS--TLLCLTHTKAAAAEMSHRVLEIITAWSH 91 ++A+AGSGKT+ LVQR+L + L N S +L LT T AA EM R+L + +S Sbjct: 8 INASAGSGKTYALVQRLLMICLRYPNQQQSIRNILALTFTNKAANEMKERILSWLGNFS- 66 Query: 92 LSDEILSAEITKI------QGKKPNKSDM-SKARHLLITILETPGGLKVQTIHAFCEAIM 144 D +A++ I QG K D+ +++ LL +L L + TI F ++ Sbjct: 67 AKDYAENADLKNIQKAFEEQGLKITIDDLHQRSKKLLDYVLHNYSTLNIGTIDRFNSRLV 126 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN---NEELKKAFYEILEIS-- 199 + F E + +F + E + LIE K MLD NE + +F + ++ S Sbjct: 127 RSFSYELGLAKNFNLEIEAEP-FLIEAVDK------MLDQIGENETISNSFMDYVDYSLE 179 Query: 200 NDEDI 204 N+E I Sbjct: 180 NNERI 184 >gi|238798592|ref|ZP_04642068.1| DNA helicase II [Yersinia mollaretii ATCC 43969] gi|238717548|gb|EEQ09388.1| DNA helicase II [Yersinia mollaretii ATCC 43969] Length = 721 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + NA P +++ +T Sbjct: 4 SDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIISVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 62 FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H +++ ++AN+ F I D + +L++ K+ Sbjct: 84 GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVKA 129 >gi|238784730|ref|ZP_04628733.1| DNA helicase II [Yersinia bercovieri ATCC 43970] gi|238714326|gb|EEQ06335.1| DNA helicase II [Yersinia bercovieri ATCC 43970] Length = 720 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + NA P +++ +T Sbjct: 4 SDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIISVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 62 FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H +++ ++AN+ F I D + +L++ K+ Sbjct: 84 GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVKA 129 >gi|210135718|ref|YP_002302157.1| putative recombination protein RecB [Helicobacter pylori P12] gi|210133686|gb|ACJ08677.1| ATP-dependent nuclease subunit A [Helicobacter pylori P12] Length = 946 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 10/134 (7%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + L E Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66 Query: 96 ILSAEITKIQG-----KKPNKSDMSKARHLLITILET--PGGLKVQTIHAFCEAIMQQFP 148 L E K Q ++ D S R+ I + +++ TI AF ++I+++F Sbjct: 67 NLENEKEKSQNILKELEEKYHLDPSLVRNSAPKIYQRFLNAEIRISTIDAFFQSILRKFC 126 Query: 149 LEANITSHFAIADE 162 ++++F + ++ Sbjct: 127 WFVGLSANFEVNED 140 >gi|308181395|ref|YP_003925523.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046886|gb|ADN99429.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp. plantarum ST-III] Length = 1249 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 11/128 (8%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T S+Q + + + VSA+AGSGKT +L++R++R +LA + LL +T T AA M Sbjct: 8 TPSQQAVIAQQGNNLLVSASAGSGKTTVLIERIMRKILAGTNIDQLLVVTFTNLAAKHMK 67 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 ++ + ++ I+++ P ++ S A L L G + T+ AF Sbjct: 68 QKL-----------ESQINKRISQLMTDNPAQTTASPAIRQLRQQLNLLGVANISTLDAF 116 Query: 140 CEAIMQQF 147 C ++Q++ Sbjct: 117 CLRVIQRY 124 >gi|254557326|ref|YP_003063743.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum JDM1] gi|254046253|gb|ACT63046.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum JDM1] Length = 1249 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 11/128 (8%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T S+Q + + + VSA+AGSGKT +L++R++R +LA + LL +T T AA M Sbjct: 8 TPSQQAVIAQQGNNLLVSASAGSGKTTVLIERIMRKILAGTNIDQLLVVTFTNLAAKHMK 67 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 ++ + ++ I+++ P ++ S A L L G + T+ AF Sbjct: 68 QKL-----------ESQINKRISQLMTDNPAQTTASPAIRQLRQQLNLLGVANISTLDAF 116 Query: 140 CEAIMQQF 147 C ++Q++ Sbjct: 117 CLRVIQRY 124 >gi|208435433|ref|YP_002267099.1| ATP-dependent nuclease [Helicobacter pylori G27] gi|208433362|gb|ACI28233.1| ATP-dependent nuclease [Helicobacter pylori G27] Length = 963 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 18/163 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + L E Sbjct: 3 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQQE 59 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGG----------LKVQTIHAFCEAIMQ 145 L E K Q ++ + HL +++ +++ TI AF ++I++ Sbjct: 60 NLENEKEKSQNI---LKELEEKYHLDPDLVQNSAQKIYQRFLNAEIRISTIDAFFQSILR 116 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 +F ++++F + E +K + +S L+++ + EEL Sbjct: 117 KFCWFVGLSANFEV--NEDTKAHQRQLNESFLSALNGEQLEEL 157 >gi|317010231|gb|ADU80811.1| putative recombination protein RecB [Helicobacter pylori India7] Length = 948 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 12/160 (7%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + L E Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66 Query: 96 ILSAEITKIQG-----KKPNKSDMSKARHLLITILET--PGGLKVQTIHAFCEAIMQQFP 148 L +E K Q ++ + + S ++ I + +++ TI AF ++I+++F Sbjct: 67 NLESEKEKSQNILKELEEKYRLNPSFVQNSAPKIYQRFLNAEIRISTIDAFFQSILRKFC 126 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 ++++F + E +K ++ +S L+++ + EEL Sbjct: 127 WFVGLSANFEV--NENTKAHQQQLNESFLSALNGEQLEEL 164 >gi|319934767|ref|ZP_08009212.1| hypothetical protein HMPREF9488_00043 [Coprobacillus sp. 29_1] gi|319810144|gb|EFW06506.1| hypothetical protein HMPREF9488_00043 [Coprobacillus sp. 29_1] Length = 1203 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 55/127 (43%), Gaps = 19/127 (14%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 S VSA AGSGKT ILV R++ LL L LT T+AA EM R L Sbjct: 17 SILVSAPAGSGKTKILVSRIVELLKEGYEIFDFLVLTFTQAAGNEMKQR----------L 66 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 S+E+ T I D++ HL IL P + H FC ++ ++ N Sbjct: 67 SEELHQLVSTDI--------DLTLKEHLEKQILNLPHAY-MTNFHGFCNLLLMKYGYLVN 117 Query: 153 ITSHFAI 159 + F I Sbjct: 118 VMPGFEI 124 >gi|300768583|ref|ZP_07078482.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493890|gb|EFK29059.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 1249 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 11/128 (8%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T S+Q + + + VSA+AGSGKT +L++R++R +LA + LL +T T AA M Sbjct: 8 TPSQQAVIAQQGNNLLVSASAGSGKTTVLIERIMRKILAGTNIDQLLVVTFTNLAAKHMK 67 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 ++ + ++ I+++ P ++ S A L L G + T+ AF Sbjct: 68 QKL-----------ESQINKRISQLMTDNPAQTTASPAIRQLRQQLNLLGVANISTLDAF 116 Query: 140 CEAIMQQF 147 C ++Q++ Sbjct: 117 CLRVIQRY 124 >gi|28379194|ref|NP_786086.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum WCFS1] gi|81630835|sp|Q88U41|ADDA_LACPL RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|28272032|emb|CAD64937.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum WCFS1] Length = 1249 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 11/128 (8%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T S+Q + + + VSA+AGSGKT +L++R++R +LA + LL +T T AA M Sbjct: 8 TPSQQAVIAQQGNNLLVSASAGSGKTTVLIERIMRKILAGTNIDQLLVVTFTNLAAKHMK 67 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 ++ + ++ I+++ P ++ S A L L G + T+ AF Sbjct: 68 QKL-----------ESQINKRISQLMTDNPAQTTASPAIRQLRQQLNLLGVANISTLDAF 116 Query: 140 CEAIMQQF 147 C ++Q++ Sbjct: 117 CLRVIQRY 124 >gi|239636506|ref|ZP_04677508.1| ATP-dependent nuclease subunit A [Staphylococcus warneri L37603] gi|239597861|gb|EEQ80356.1| ATP-dependent nuclease subunit A [Staphylococcus warneri L37603] Length = 1220 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 33/190 (17%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R++ R+L LL +T T +A EM HRV Sbjct: 28 VAAAAGSGKTAVLVERIIQRILRDEIDVDRLLVVTFTNLSAREMKHRV----------DQ 77 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I + PN + R I I +T ++ T+H+FC ++QQ +I Sbjct: 78 RIQQASI-----EDPNNEHLKNQR---IKIHQT----QISTLHSFCLKLIQQHYDVLDID 125 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN 214 +F + E ++ L+E+ T+ ++ + ++L F ++ E +++ +T +II Sbjct: 126 PNFRTSSEAENILLLEQ----TIDEVLEQHYDKLNPDFIDLTEQLSNDRSDTQFRNII-- 179 Query: 215 RTALKLIFFF 224 K ++FF Sbjct: 180 ----KQLYFF 185 >gi|262375119|ref|ZP_06068353.1| exodeoxyribonuclease V, beta subunit [Acinetobacter lwoffii SH145] gi|262310132|gb|EEY91261.1| exodeoxyribonuclease V, beta subunit [Acinetobacter lwoffii SH145] Length = 1367 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 13/131 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSH 91 W+ A+AG+GKT+ L ++R+ L +P ++ T T+ A AE+ +RV +E A+ Sbjct: 20 WIEASAGTGKTYTLSSLMVRIFLDQYYPHQVIATTFTRKATAELKNRVRLRVEETLAYIQ 79 Query: 92 LSDEILSAEIT-KIQGK---------KPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 ++ S EIT KIQ + K S + AR L +L L V T+ +F + Sbjct: 80 RHQQLNSVEITAKIQNETDPLFQQVLKDYGSRLDYARRRLRLVLNQLDELFVGTLDSFSQ 139 Query: 142 AIMQQFPLEAN 152 ++++F E+ Sbjct: 140 KLLREFAFESG 150 >gi|255534428|ref|YP_003094799.1| ATP-dependent helicase [Flavobacteriaceae bacterium 3519-10] gi|255340624|gb|ACU06737.1| ATP-dependent helicase [Flavobacteriaceae bacterium 3519-10] Length = 1064 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 92/180 (51%), Gaps = 18/180 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS------TLLCLTHTKAAAAEMSHRVLEIITAW 89 ++A+AGSGKT+ LVQ +L + L HPS +L LT T AA EM R+++ + + Sbjct: 19 INASAGSGKTYALVQNLLVICL--KHPSQPDKIRNILALTFTNKAANEMKQRIIKWLREF 76 Query: 90 S---HLSDEILS--AEITKIQGKKPNKSDMSK-ARHLLITILETPGGLKVQTIHAFCEAI 143 S + +++ L + K+QG + + + K +R +L +L L + TI F + Sbjct: 77 SSAEYANNQDLKNIQQKMKVQGIELSLETLHKRSRKILDYVLHNYSTLNIGTIDKFNSRL 136 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ F E + +F + E ++ + EA + LA I +N ++ AF + + S D + Sbjct: 137 VRSFSYELGLAQNFNL--EINAEPYLVEAVEKMLADIGAEN--DVSDAFMDFVNYSLDNN 192 >gi|255994221|ref|ZP_05427356.1| putative ATP-dependent exoDNAse beta subunit [Eubacterium saphenum ATCC 49989] gi|255993889|gb|EEU03978.1| putative ATP-dependent exoDNAse beta subunit [Eubacterium saphenum ATCC 49989] Length = 1289 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 97/199 (48%), Gaps = 29/199 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA AGSGKT +L+QR+ L+ + A +L T T AAAAE+ R+ + +T Sbjct: 20 VSAAAGSGKTAVLIQRLKSLVTDDGASLDEVLVATFTNAAAAELKERLAKALT------- 72 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITI--LETPGGLKVQTIHAFCEAIMQQFPLEAN 152 EI +Q D K LL+ +ET + T H+F ++++F A Sbjct: 73 ----QEIEIVQ-------DDEKREFLLVQRKNIETAS---IGTFHSFAIDLLREFNYRAG 118 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDI 211 I+ +F I +QS LI + TL ++ + E ++F L+ SND+ + + +I Sbjct: 119 ISKNFGIL-SQQSDALI---TRETLDAVFTEFFEAKDESFLAFLDAYSNDKSDDDIKKNI 174 Query: 212 ISNRTALKLIFFFFSYLWR 230 I T L+ + ++ + L R Sbjct: 175 IEVYTKLRALPYYDAILAR 193 >gi|254780085|ref|YP_003058192.1| putative recombination protein RecB [Helicobacter pylori B38] gi|254001998|emb|CAX30257.1| ATP-dependent DNA helicase [Helicobacter pylori B38] Length = 945 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 89/168 (52%), Gaps = 27/168 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + + Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYL--------K 61 Query: 96 ILSAEITKIQGKKPNKS---DMSKARHLLITILETPGG----------LKVQTIHAFCEA 142 IL E + GK+ +++ ++ + HL +++ +++ TI AF ++ Sbjct: 62 ILQKENLE-SGKEKSQNILKELEEKYHLDPSLVRNSAQKIYQRFLNAEIRISTIDAFFQS 120 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 I+++F ++++F + E +K ++ + L+++ NNE+L++ Sbjct: 121 ILRKFCWFVGLSANFEV--NEDTKAHQQQLNEGFLSAL---NNEQLEE 163 >gi|154502322|ref|ZP_02039382.1| hypothetical protein RUMGNA_00135 [Ruminococcus gnavus ATCC 29149] gi|153796947|gb|EDN79367.1| hypothetical protein RUMGNA_00135 [Ruminococcus gnavus ATCC 29149] Length = 1194 Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats. Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 29/169 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R+ VSA AGSGKT +LV+R+++ LL P LL +T T+AAAAEM R+ + I Sbjct: 18 RNILVSAAAGSGKTAVLVERIIQRLLDERDPLDVDRLLIVTFTEAAAAEMKERIRDAIE- 76 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + L D P + + L+ + ++ TIH+FC +++++ Sbjct: 77 -NALED-------------TPGNVHLQRQATLIHSA-------RITTIHSFCLSVIREHF 115 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 N+ F IA+E + K L ++ + L S +E +AF E E Sbjct: 116 HAINLDPGFRIAEEGELKLLRQDVLEEMLESCY----DEGTEAFLEFAE 160 >gi|226326684|ref|ZP_03802202.1| hypothetical protein PROPEN_00537 [Proteus penneri ATCC 35198] gi|225204905|gb|EEG87259.1| hypothetical protein PROPEN_00537 [Proteus penneri ATCC 35198] Length = 506 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 39/141 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ LL + A P +++ +T T AAAEM HR+ ++I Sbjct: 27 VLAGAGSGKTRVLVHRIAWLLSVEQASPFSIMAVTFTNKAAAEMRHRIEDLIGT------ 80 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + GG+ + T H+ +++ L+AN+ Sbjct: 81 --------------------------------SQGGMWIGTFHSLAHRLLRAHYLDANLP 108 Query: 155 SHFAIADEEQSKKLIEEAKKS 175 F I D + +LI KS Sbjct: 109 QDFQIIDSDDQYRLIRRIVKS 129 >gi|308185340|ref|YP_003929473.1| putative recombination protein RecB [Helicobacter pylori SJM180] gi|308061260|gb|ADO03156.1| putative recombination protein RecB [Helicobacter pylori SJM180] Length = 953 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 89/168 (52%), Gaps = 27/168 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + + Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYL--------K 61 Query: 96 ILSAEITKIQGKKPNKS---DMSKARHLLITILETPGG----------LKVQTIHAFCEA 142 IL E + GK+ +++ ++ + HL +++ +++ TI AF ++ Sbjct: 62 ILQKENLE-SGKEKSQNILKELEEKYHLDPSLVRNSAQKIYQRFLNAEIRISTIDAFFQS 120 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 I+++F ++++F + E +K ++ + L+++ NNE+L++ Sbjct: 121 ILRKFCWFVGLSANFEV--NEDTKAHQQQLNEGFLSAL---NNEQLEE 163 >gi|299138774|ref|ZP_07031952.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8] gi|298599410|gb|EFI55570.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8] Length = 1202 Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 94/191 (49%), Gaps = 10/191 (5%) Query: 31 TRSAW-VSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIIT 87 T+++W V A AGSGKT +L+QR L+LL + P +L +T T+ A AE+ R+L + Sbjct: 23 TKASWIVEAPAGSGKTGLLMQRYLKLLTEDGVVQPEEVLAITFTRKATAELRARILTELE 82 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 H + + + ++ + +++ L ++E P L+V+TI + C I Sbjct: 83 KAHHETPLLDQNSTFERATREFATAVLARDAALGWELIENPQRLRVRTIDSVCAEIASTL 142 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND---EDI 204 PL + S + E ++ L A + TL + ++ L A IL + D D Sbjct: 143 PLLSG--SGGSRTPVEDAEPLYRLAARRTLMQLG-GSDAALHTALRTIL-LHRDGSLSDC 198 Query: 205 ETLISDIISNR 215 ETL++ +++ R Sbjct: 199 ETLLARMLAAR 209 >gi|326336039|ref|ZP_08202215.1| UvrD/REP helicase subfamily [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691836|gb|EGD33799.1| UvrD/REP helicase subfamily [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 1066 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 25/142 (17%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +A+AGSGKT LV+ LRL+LA + +LL +T T A EM RV+ + +S Sbjct: 10 NASAGSGKTFTLVKSFLRLILATKNVEAYKSLLAITFTNKAVNEMKERVINKLLLFSTSD 69 Query: 94 DEILSAEITKIQGKKPNKSDM----------------SKARHLLITILETPGGLKVQTIH 137 EI + KKP+K M +++ +L IL G + TI Sbjct: 70 QEIQE------EDKKPSKDPMFRQLAREIGLTFEQLRERSKKVLNYILHNYAGFTIVTID 123 Query: 138 AFCEAIMQQFPLEANITSHFAI 159 F + +++ F + + +F + Sbjct: 124 GFNQRLIRSFAFDLKLNPNFEV 145 >gi|317181241|dbj|BAJ59027.1| helicase [Helicobacter pylori F32] Length = 938 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 12/161 (7%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI--ITAWSHLS 93 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ I +L Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQKENLE 69 Query: 94 DEILSAEITKIQGKKPNKSDM------SKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 DE + I + K + ++A+ + L +++ TI AF ++I+++F Sbjct: 70 DEKEKEKSQNILKELEEKYRLDPSFVQNRAQEIYQRFLNAE--IRISTIDAFFQSILRKF 127 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + ++F + E +K ++ +S L+++ + EEL Sbjct: 128 CWFVGLRANFEV--NEDTKAHQQQLNESFLSALDKEQLEEL 166 >gi|290968022|ref|ZP_06559571.1| ATP-dependent nuclease subunit A [Megasphaera genomosp. type_1 str. 28L] gi|290781928|gb|EFD94507.1| ATP-dependent nuclease subunit A [Megasphaera genomosp. type_1 str. 28L] Length = 1217 Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 85/178 (47%), Gaps = 30/178 (16%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 ++ T++++ + ++ +SA AGSGKT +LV+R++R LL +P + +L +T TKA Sbjct: 1 MAWTEAQEAAMNSRGQTLLLSAAAGSGKTAVLVERLVRRLLDRQNPIDMTAVLVVTFTKA 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ + + D + LL P + Sbjct: 61 AAAEMRERI----------------GAALTAALEATGRPDAERQLALL------PAA-SI 97 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 T+H+FC+ +++ + ++ F +A EE+ L +K L ++L E+ +KA Sbjct: 98 STLHSFCQEVIRTYFYTIDLDPAFRVAGEEELSLL----RKQVLEDLLLSYYEQEEKA 151 >gi|91201897|emb|CAJ74957.1| similar to ATP-dependent DNA helicase subunit AddA [Candidatus Kuenenia stuttgartiensis] Length = 1198 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 25/170 (14%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-------LLCLTHTKA 73 K +L S+ ++ ++A AG+GKT ILVQR+L LLLA+ + ++ LT T+ Sbjct: 38 KIRELAVSEQHKNIVLTAGAGTGKTTILVQRILHLLLAHKSLQSEESPILKIIALTFTEK 97 Query: 74 AAAEMSHRVLE----IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 AA+EM R++E I+ A + S+++ SD+ H + +E Sbjct: 98 AASEMKIRLMEELEKIVAAMKGICRPEESSQVNNF------ISDLQTTYHTTYSEIERRA 151 Query: 130 --------GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 + TIH+F I++ FP+E+ + F + + + L E+ Sbjct: 152 VQSLADMDKAMICTIHSFAAYILRMFPIESGVAPGFTVDEGSVFEDLFEK 201 >gi|307717800|ref|YP_003873332.1| hypothetical protein STHERM_c00830 [Spirochaeta thermophila DSM 6192] gi|306531525|gb|ADN01059.1| hypothetical protein STHERM_c00830 [Spirochaeta thermophila DSM 6192] Length = 1152 Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 31/75 (41%), Positives = 44/75 (58%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 +Q A + ++A V A AGSGKT +L +R LRL+ PS +L LT T+ AAAEM R+ Sbjct: 6 DQRRAVETEKTAVVIAGAGSGKTRVLTERYLRLVRNGVQPSRILALTFTRKAAAEMHERI 65 Query: 83 LEIITAWSHLSDEIL 97 + I + S +L Sbjct: 66 SQGIRGLARSSHGLL 80 >gi|262040875|ref|ZP_06014101.1| excision endonuclease subunit UvrD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041764|gb|EEW42809.1| excision endonuclease subunit UvrD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 720 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ LL + N P +++ +T T AAAEM HR+ +++ Sbjct: 27 VLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT------ 80 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 T GG+ V T H +++ L+AN+ Sbjct: 81 --------------------------------TQGGMWVGTFHGLAHRLLRAHHLDANLP 108 Query: 155 SHFAIADEEQSKKLIE 170 F I D E +L++ Sbjct: 109 QDFQILDSEDQLRLLK 124 >gi|315652079|ref|ZP_07905080.1| ATP-dependent deoxyribonuclease subunit A [Eubacterium saburreum DSM 3986] gi|315485726|gb|EFU76107.1| ATP-dependent deoxyribonuclease subunit A [Eubacterium saburreum DSM 3986] Length = 1152 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 38/201 (18%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAW 89 S VSA AGSGKT +LV+R+++ + N +P TLL +T T+AAAA M + Sbjct: 16 SILVSAAAGSGKTAVLVERIIKKITDNENPIDVDTLLVMTFTRAAAASMKEK-------- 67 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 I +A + +++ + + + + + + + ++ T +FC +I+++ Sbjct: 68 ------IYNALLKEMEKHEKDTKEFKRLKEQSVLL----ASARIMTTDSFCLSIIRENID 117 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209 + +I F++ADE + I K T+ ++ E K F E +S Sbjct: 118 KIDIDPAFSVADESE----ISLLKADTMDELLESEYEAASKDFME-------------LS 160 Query: 210 DIISNRTALKLIFFFFSYLWR 230 D +N K I F L+R Sbjct: 161 DAFANSKGDKSISEFIEKLYR 181 >gi|300714804|ref|YP_003739607.1| DNA helicase II [Erwinia billingiae Eb661] gi|299060640|emb|CAX57747.1| DNA helicase II [Erwinia billingiae Eb661] Length = 720 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 45/177 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D ++ + + + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SDLLDSLNDKQRDAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMAVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ ++I + G Sbjct: 62 FTNKAAAEMRHRIEQLIGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G+ + T H +++ L+AN+ F I D E +L+ K + ++ LD+ + Sbjct: 84 GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDDKQ 136 >gi|152972801|ref|YP_001337947.1| DNA-dependent helicase II [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|329997488|ref|ZP_08302790.1| DNA helicase II [Klebsiella sp. MS 92-3] gi|150957650|gb|ABR79680.1| DNA-dependent ATPase I and helicase II [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328539056|gb|EGF65095.1| DNA helicase II [Klebsiella sp. MS 92-3] Length = 720 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ LL + N P +++ +T T AAAEM HR+ +++ Sbjct: 27 VLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT------ 80 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 T GG+ V T H +++ L+AN+ Sbjct: 81 --------------------------------TQGGMWVGTFHGLAHRLLRAHHLDANLP 108 Query: 155 SHFAIADEEQSKKLIE 170 F I D E +L++ Sbjct: 109 QDFQILDSEDQLRLLK 124 >gi|206579213|ref|YP_002241124.1| DNA helicase II [Klebsiella pneumoniae 342] gi|288937764|ref|YP_003441823.1| DNA helicase II [Klebsiella variicola At-22] gi|206568271|gb|ACI10047.1| DNA helicase II [Klebsiella pneumoniae 342] gi|288892473|gb|ADC60791.1| DNA helicase II [Klebsiella variicola At-22] Length = 720 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ LL + N P +++ +T T AAAEM HR+ +++ Sbjct: 27 VLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT------ 80 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 T GG+ V T H +++ L+AN+ Sbjct: 81 --------------------------------TQGGMWVGTFHGLAHRLLRAHHLDANLP 108 Query: 155 SHFAIADEEQSKKLIE 170 F I D E +L++ Sbjct: 109 QDFQILDSEDQLRLLK 124 >gi|166032801|ref|ZP_02235630.1| hypothetical protein DORFOR_02516 [Dorea formicigenerans ATCC 27755] gi|166027158|gb|EDR45915.1| hypothetical protein DORFOR_02516 [Dorea formicigenerans ATCC 27755] Length = 190 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 72/167 (43%), Gaps = 34/167 (20%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 TK +Q + R+ VSA AGSGKT +LV+R++ +L HP LL +T T+AAA Sbjct: 6 TKQQQQVIDLRDRNILVSAAAGSGKTAVLVERIITMLTDEEHPVNVDELLIVTFTEAAAG 65 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ I K + P + + L+ ++ TI Sbjct: 66 EMKERI---------------RGAIEKALEENPENEHLKRQATLIHNA-------QITTI 103 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 H+FC ++ I HF + D + + EE + L +LD Sbjct: 104 HSFCLSV---------IRDHFHVIDIDPGFRTAEEGELKLLRHDVLD 141 >gi|290513159|ref|ZP_06552521.1| DNA helicase II [Klebsiella sp. 1_1_55] gi|289774370|gb|EFD82376.1| DNA helicase II [Klebsiella sp. 1_1_55] Length = 722 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ LL + N P +++ +T T AAAEM HR+ +++ Sbjct: 29 VLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT------ 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 T GG+ V T H +++ L+AN+ Sbjct: 83 --------------------------------TQGGMWVGTFHGLAHRLLRAHHLDANLP 110 Query: 155 SHFAIADEEQSKKLIE 170 F I D E +L++ Sbjct: 111 QDFQILDSEDQLRLLK 126 >gi|213622282|ref|ZP_03375065.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 495 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ V T H +++ ++AN+ F I D E +L++ K+ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLKRLIKA 129 >gi|206603905|gb|EDZ40385.1| Putative exodeoxyribonuclease V, beta subunit [Leptospirillum sp. Group II '5-way CG'] Length = 1095 Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 15/169 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSHL 92 + A+AG+GKT L L ++L+ P +L +T T+AAA ++ R+ LE + W Sbjct: 21 IEASAGTGKTTTLALLYLSVILSGVSPENILVVTFTRAAAQDVRERIQKLLEDVRQWRSG 80 Query: 93 SD-EI---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 S EI L A + ++ P DM + R L+ P +QTIH+FC+++++Q Sbjct: 81 SKAEILPDLRAYLETLE-TDPLLLDM-RLREALVVFDRAP----IQTIHSFCQSLLRQMS 134 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 ++ + E+Q ++ E+ S+ + L + F + E Sbjct: 135 FLLGAPANLVLVPEDQP--VLYESSVRLWRSLFYGRDSRLAEFFLSVWE 181 >gi|262198052|ref|YP_003269261.1| exodeoxyribonuclease V [Haliangium ochraceum DSM 14365] gi|262081399|gb|ACY17368.1| Exodeoxyribonuclease V [Haliangium ochraceum DSM 14365] Length = 1284 Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 8/123 (6%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL 83 L A DP R V A+AG+GKT+++ RV+ LLL+ P +L +T T+ A AE+ RV Sbjct: 38 LAALDPERHQVVEASAGTGKTYLIEHRVVDLLLSTDTPIEQILVVTFTEKATAELRFRVR 97 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 +I + + +A P+ ++AR L + + TIHAFC+ + Sbjct: 98 RLI-------ENVAAARQHTAAEDAPHWRIDAEARRKLTDAMLGFDRAAIHTIHAFCQRV 150 Query: 144 MQQ 146 + + Sbjct: 151 LTE 153 >gi|238892413|ref|YP_002917147.1| DNA-dependent helicase II [Klebsiella pneumoniae NTUH-K2044] gi|238544729|dbj|BAH61080.1| DNA-dependent ATPase I and helicase II [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 722 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ LL + N P +++ +T T AAAEM HR+ +++ Sbjct: 29 VLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT------ 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 T GG+ V T H +++ L+AN+ Sbjct: 83 --------------------------------TQGGMWVGTFHGLAHRLLRAHHLDANLP 110 Query: 155 SHFAIADEEQSKKLIE 170 F I D E +L++ Sbjct: 111 QDFQILDSEDQLRLLK 126 >gi|289829109|ref|ZP_06546783.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 539 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ V T H +++ ++AN+ F I D E +L++ K+ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLKRLIKA 129 >gi|239826206|ref|YP_002948830.1| recombination helicase AddA [Geobacillus sp. WCH70] gi|239806499|gb|ACS23564.1| recombination helicase AddA [Geobacillus sp. WCH70] Length = 1244 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 25/130 (19%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R+++ + A P LL +T T A+AAEM R+ E Sbjct: 31 VAAAAGSGKTAVLVERIIQKITAKEDPIDVDRLLVVTFTNASAAEMKTRIAEA------- 83 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 I + K+PN + + LL + TIH+FC +++++ + Sbjct: 84 --------IERELDKQPNSLHLRRQLSLL-------NRASISTIHSFCLDVIRKYYYLID 128 Query: 153 ITSHFAIADE 162 I F IAD+ Sbjct: 129 IDPVFRIADD 138 >gi|168185692|ref|ZP_02620327.1| recombination helicase AddA [Clostridium botulinum C str. Eklund] gi|169296499|gb|EDS78632.1| recombination helicase AddA [Clostridium botulinum C str. Eklund] Length = 1236 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 27/134 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 VSA AGSGKT +LV+R+++++ +P LL +T T AAA+EM R Sbjct: 23 VSAAAGSGKTAVLVERIIKMITDFKNPVDIDRLLVVTFTNAAASEMKER----------- 71 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151 I K GK+ K SK +T+L + T+H+FC E I F Sbjct: 72 --------IGKAIGKELTKHPKSKQLQRQLTLLNRAS---ITTMHSFCLETIRNNFHY-I 119 Query: 152 NITSHFAIADEEQS 165 ++ +F I DE ++ Sbjct: 120 DLDPNFRIGDETET 133 >gi|163786810|ref|ZP_02181258.1| hypothetical protein FBALC1_16532 [Flavobacteriales bacterium ALC-1] gi|159878670|gb|EDP72726.1| hypothetical protein FBALC1_16532 [Flavobacteriales bacterium ALC-1] Length = 1043 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 80/151 (52%), Gaps = 14/151 (9%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +A+AGSGKT L + L++L+A+ + ++L +T T A EM R++ ++ ++S S Sbjct: 10 NASAGSGKTFTLAKAYLKILVASKNYDQFKSVLAITFTNKAVGEMKERIINMLKSFS--S 67 Query: 94 DEILSAE------ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 +E L+ I +P K ++K++H+L I+ G + TI F +++ F Sbjct: 68 EESLTEPHPMFEAICDELDIEP-KFLLNKSKHILKHIIHNYGAFDISTIDGFTHRVIRTF 126 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 + N+ +F + E ++L+ EA S +A Sbjct: 127 AHDLNLPVNFEV--ELDQERLLNEAVDSLIA 155 >gi|312872979|ref|ZP_07733039.1| ATP-dependent helicase/nuclease subunit A family protein [Lactobacillus iners LEAF 2062A-h1] gi|311091501|gb|EFQ49885.1| ATP-dependent helicase/nuclease subunit A family protein [Lactobacillus iners LEAF 2062A-h1] Length = 201 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 30/193 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLK 132 +EM R+ I KI+ + N K ++K Sbjct: 61 SEMKLRIKNAIK--------------NKIKEQPDNLFLKQQLAKV-----------DIAN 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TI +FC ++++F N+ +F+I ++ L++E +N ++ F Sbjct: 96 ISTIDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDF 155 Query: 193 YEILEISNDEDIE 205 Y + D ++E Sbjct: 156 YN--NFAGDREVE 166 >gi|329920263|ref|ZP_08277047.1| hypothetical protein HMPREF9210_0804 [Lactobacillus iners SPIN 1401G] gi|328936308|gb|EGG32756.1| hypothetical protein HMPREF9210_0804 [Lactobacillus iners SPIN 1401G] Length = 201 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 30/193 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLK 132 +EM R+ I KI+ + N K ++K Sbjct: 61 SEMKLRIKNAIK--------------NKIKEQPDNLFLKQQLAKV-----------DIAN 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TI +FC ++++F N+ +F+I ++ L++E +N ++ F Sbjct: 96 ISTIDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDF 155 Query: 193 YEILEISNDEDIE 205 Y + D ++E Sbjct: 156 YN--NFAGDREVE 166 >gi|323342307|ref|ZP_08082539.1| UvrD/REP helicase subfamily [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463419|gb|EFY08613.1| UvrD/REP helicase subfamily [Erysipelothrix rhusiopathiae ATCC 19414] Length = 1040 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 85/162 (52%), Gaps = 26/162 (16%) Query: 31 TRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 ++ VSA+AG+GKT +L+ R++ R++ N + +T T+AAA+EM R+L Sbjct: 16 NQNVIVSASAGAGKTTVLIARLMKRIIRDNVRIDEVCAMTFTEAAASEMKTRLL------ 69 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP- 148 + L+DE + ++SD + I+++ET ++ TIH+FC I++ + Sbjct: 70 ASLNDEY-----------RKHESDFIAEQ---ISLVETA---QISTIHSFCLTIIKNYGY 112 Query: 149 -LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + N + I D+ Q+K L +A + T + ++ E LK Sbjct: 113 IIGVNPSRADNILDDAQTKLLQRQAMRKTFDQWLQNDYENLK 154 >gi|255526102|ref|ZP_05393024.1| UvrD/REP helicase [Clostridium carboxidivorans P7] gi|296185823|ref|ZP_06854230.1| UvrD/REP helicase [Clostridium carboxidivorans P7] gi|255510218|gb|EET86536.1| UvrD/REP helicase [Clostridium carboxidivorans P7] gi|296049651|gb|EFG89078.1| UvrD/REP helicase [Clostridium carboxidivorans P7] Length = 1112 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 60/139 (43%), Gaps = 20/139 (14%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 EQ A D T++ VSA AGSGKT +L R LRLL + +T T+ AA EM R+ Sbjct: 10 EQEKAVDITKNIAVSAGAGSGKTRVLTNRYLRLLEGGLQIEEIAAITFTEKAALEMKERI 69 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + I +K + SD + + L+ + TIH FC Sbjct: 70 RKAIN-------------------EKISSSDFDHKKQWM-KHLDKLNRANISTIHGFCSN 109 Query: 143 IMQQFPLEANITSHFAIAD 161 I+++ + F+I D Sbjct: 110 IVRENAAFLGVDFSFSIID 128 >gi|157144441|ref|YP_001451760.1| DNA-dependent helicase II [Citrobacter koseri ATCC BAA-895] gi|157081646|gb|ABV11324.1| hypothetical protein CKO_00155 [Citrobacter koseri ATCC BAA-895] Length = 720 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 39/142 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ LL + N P +++ +T T AAAEM HR+ +++ Sbjct: 21 PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 T GG+ V T H +++ Sbjct: 81 --------------------------------------TQGGMWVGTFHGLAHRLLRAHH 102 Query: 149 LEANITSHFAIADEEQSKKLIE 170 ++AN+ F I D E +L++ Sbjct: 103 MDANLPQDFQILDSEDQLRLLK 124 >gi|40789159|emb|CAE84140.1| putative helicase [Pseudomonas fluorescens] Length = 1121 Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 9/172 (5%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 LA DP RS + A AGSGKT L R+L L P +L +T T AAAE+ RV Sbjct: 33 LAIDPRRSLLLLAPAGSGKTSTLQMRLLSCLTVVERPEEVLAITFTNMAAAEIVERV--- 89 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 I A + I + ++ + + + + + + +L P L++ T +FC ++ Sbjct: 90 IGALQQAATGIEPELVHELPQYRLARLVLDRDKEMGWNLLLNPSRLRIMTFDSFCASLAS 149 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 + P+ + + D + + +A TL S+ N+ ++ +A LE Sbjct: 150 KTPIMSGLGGGKTTDD---ASLIYRQAILETLKSV---NDNDIPEALSNALE 195 >gi|225388060|ref|ZP_03757784.1| hypothetical protein CLOSTASPAR_01794 [Clostridium asparagiforme DSM 15981] gi|225045883|gb|EEG56129.1| hypothetical protein CLOSTASPAR_01794 [Clostridium asparagiforme DSM 15981] Length = 383 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 82/195 (42%), Gaps = 25/195 (12%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + T+ +Q + R+ VSA AGSGKT +LV+R++R++ HP LL +T T A Sbjct: 3 VKWTEKQQQVIHSRNRNLLVSAAAGSGKTAVLVERIIRMISEGEHPLNIDQLLVMTFTNA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM RV A + K+ P+ HL + P ++ Sbjct: 63 AAAEMRERV---------------GAAVDKLLTVCPDDE------HLWLQGALIPQA-QI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TI +FC +++ I F I DE + + + K L + E+ Sbjct: 101 TTIDSFCLNLIRNHYSSLEIDPAFRIGDEGELALMRADVMKEMLEWHYQEGGEDFAAFVE 160 Query: 194 EILEISNDEDIETLI 208 + +D IE +I Sbjct: 161 QFGRGKSDAGIEDVI 175 >gi|291279137|ref|YP_003495972.1| exodeoxyribonuclease V subunit beta [Deferribacter desulfuricans SSM1] gi|290753839|dbj|BAI80216.1| exodeoxyribonuclease V, beta subunit [Deferribacter desulfuricans SSM1] Length = 1098 Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 90/182 (49%), Gaps = 14/182 (7%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLE-IITAWSHL- 92 + A+AG+GKT+ + LRL++ + P +L +T T AA E+ +R+ + ++ A+ + Sbjct: 19 IEASAGTGKTYTIAVIYLRLIIEKSMLPENILVVTFTVDAAEELKNRIRKFLVNAYRFIN 78 Query: 93 --SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 SD+I S ++G K +K +S + L + E+ + TIH FC+ ++ + PLE Sbjct: 79 EESDDIDSNLKLYLEGFKGDKKVLSHLKMALFMMDES----AIFTIHKFCKKVLVENPLE 134 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISD 210 ++ I E K+LIE++ + + ++ + I + D E I D Sbjct: 135 TKSLFNYEI--ESSDKELIEDSVYHLFRKVFYGEDPKIIDLLFRIYSPT---DFENFIED 189 Query: 211 II 212 + Sbjct: 190 FL 191 >gi|146343947|ref|YP_001201803.1| putative UvrD helicase [Pseudomonas fluorescens SBW25] gi|146187759|emb|CAM96087.1| putative UvrD helicase [Pseudomonas fluorescens SBW25] Length = 1121 Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 9/172 (5%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 LA DP RS + A AGSGKT L R+L L P +L +T T AAAE+ RV Sbjct: 33 LAIDPRRSLLLLAPAGSGKTSTLQMRLLSCLTVVERPEEVLAITFTNMAAAEIVERV--- 89 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 I A + I + ++ + + + + + + +L P L++ T +FC ++ Sbjct: 90 IGALQQAATGIEPELVHELPQYRLARLVLDRDKEMGWNLLLNPSRLRIMTFDSFCASLAS 149 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 + P+ + + D + + +A TL S+ N+ ++ +A LE Sbjct: 150 KTPIMSGLGGGKTTDD---ASLIYRQAILETLKSV---NDNDIPEALSNALE 195 >gi|293393896|ref|ZP_06638203.1| excision endonuclease subunit UvrD [Serratia odorifera DSM 4582] gi|291423723|gb|EFE96945.1| excision endonuclease subunit UvrD [Serratia odorifera DSM 4582] Length = 723 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 40/158 (25%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL++ +Q A + P + V A AGSGKT +LV R+ LL + N P +++ +T T Sbjct: 8 DLLNSMNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTN 67 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM HR+ ++I + GG+ Sbjct: 68 KAAAEMRHRIEQLIGT--------------------------------------SQGGMW 89 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 + T H +++ ++AN+ F I D E +L++ Sbjct: 90 IGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 127 >gi|169349910|ref|ZP_02866848.1| hypothetical protein CLOSPI_00649 [Clostridium spiroforme DSM 1552] gi|169293478|gb|EDS75611.1| hypothetical protein CLOSPI_00649 [Clostridium spiroforme DSM 1552] Length = 1236 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 57/129 (44%), Gaps = 20/129 (15%) Query: 33 SAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 S VSA AGSGKT ILV R+L L+ N + LL LT T AAA EM R+ + Sbjct: 22 SILVSAPAGSGKTKILVNRILALIEEENYNVDELLVLTFTNAAALEMKQRLQVAL----- 76 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 D+ L +IT + HLL P + H FC +++Q+ Sbjct: 77 --DQRLQDDITN-----------ELSNHLLKQKQLLPKAY-ITNFHGFCSTLLKQYGYLI 122 Query: 152 NITSHFAIA 160 I S F I Sbjct: 123 GINSKFDIC 131 >gi|213021539|ref|ZP_03335986.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 567 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ V T H +++ ++AN+ F I D E +L++ K+ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLKRLIKA 129 >gi|307692433|ref|ZP_07634670.1| DNA helicase/exodeoxyribonuclease V, subunit A [Ruminococcaceae bacterium D16] Length = 1206 Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 23/159 (14%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEM 78 T+ ++ + D VSA AGSGKT +LV+R+L R+ + L +T+TKAAAAE+ Sbjct: 6 TEEQRKIVDDRGGELLVSAAAGSGKTRVLVERLLDRVTGEGLDITQFLVITYTKAAAAEL 65 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + E+++ + PN + + L+ ++ TIHA Sbjct: 66 RGRIAQ---------------ELSQRLAQNPNDRHLRRQTTLVYQA-------QISTIHA 103 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 FC A++++ ++ F + DE + + + + L Sbjct: 104 FCAALLRESGHLLDLDPDFRLCDEGEGAVMTAQVLQDVL 142 >gi|45658522|ref|YP_002608.1| exodeoxyribonuclease V subunit beta [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601765|gb|AAS71245.1| exodeoxyribonuclease V beta chain [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 1033 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 31/127 (24%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT+ +++ V+ L+L + P T +L LT+T+ AA E+ R L Sbjct: 1 MEASAGTGKTYTIMEIVIDLILEHKIPLTQILILTYTEKAAGELKER----------LRK 50 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +++S+ +TK +AR L + + TIH FC AI++++P+E Sbjct: 51 KLISSGLTK------------EAREL--------DQVTISTIHGFCNAILKEYPVETETH 90 Query: 155 SHFAIAD 161 +++ + D Sbjct: 91 TNWILTD 97 >gi|323138754|ref|ZP_08073819.1| Exodeoxyribonuclease V [Methylocystis sp. ATCC 49242] gi|322396001|gb|EFX98537.1| Exodeoxyribonuclease V [Methylocystis sp. ATCC 49242] Length = 1130 Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 19/140 (13%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 RS V A AGSGKT ++ R+ +L P ++ +T T+ AA+E+ RV E + + Sbjct: 23 RSILVEAGAGSGKTAVMAGRIAAMLAEGVAPRSIAAVTFTELAASELLSRVREFV---AD 79 Query: 92 LSDEILSAEITK------IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 LS ++ E+ Q + N + S A I E + TIH FC+ +++ Sbjct: 80 LSAGTIATELRVALPDGLTQAHRDNLAAASAA------IDE----ITCSTIHGFCQRLIK 129 Query: 146 QFPLEANITSHFAIADEEQS 165 +P EA+I + D Q+ Sbjct: 130 PYPAEADIDPGAGVMDRNQA 149 >gi|157363798|ref|YP_001470565.1| UvrD/REP helicase [Thermotoga lettingae TMO] gi|157314402|gb|ABV33501.1| UvrD/REP helicase [Thermotoga lettingae TMO] Length = 627 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 67/165 (40%), Gaps = 41/165 (24%) Query: 15 DLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 D + Q EQ A RS + A GSGKT ++ ++L LL PS +L +T T+ Sbjct: 3 DYLQQLDDEQRTAVLKSAGRSIII-AGPGSGKTRVITYKLLHLLKTGIKPSEILLVTFTR 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA EM + +AR L LE G+ Sbjct: 62 AAANEM-----------------------------------IDRARMLTGIDLE---GIT 83 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 T H C I++++ + + +F I DEE SK LI+ + L Sbjct: 84 AGTFHHICNLILRRYARKVGLFPNFTILDEEDSKSLIKHVRTMVL 128 >gi|227543760|ref|ZP_03973809.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri CF48-3A] gi|300908827|ref|ZP_07126290.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri SD2112] gi|227186259|gb|EEI66330.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri CF48-3A] gi|300894234|gb|EFK87592.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri SD2112] Length = 1392 Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 23/197 (11%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T ++ +D + VSA+AGSGKT +LV R + L+ +L +T T AAA M Sbjct: 7 TPAQSKAINDRGENILVSASAGSGKTAVLVNRTIELIKEGQSIDRMLLVTFTDAAAKNMR 66 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 ++ A + KI N D+ R + + + TIHAF Sbjct: 67 DKI---------------RAALQKIVQDSANPKDL---RDRMSNQINRLVAADISTIHAF 108 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL---KKAFYE-I 195 C +++++ N+ F + +E + L++E ++ + N EE + +F E + Sbjct: 109 CLKLIKRYYYLINLDPQFRLLTDETERLLLQEDVWHEVSEELYKNAEEKVPGRASFSELV 168 Query: 196 LEISNDEDIETLISDII 212 L S+D D + L +D+I Sbjct: 169 LNFSSDRDDQGL-NDLI 184 >gi|167038394|ref|YP_001665972.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116798|ref|YP_004186957.1| recombination helicase AddA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|251764573|sp|B0KDB7|ADDA_THEP3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|166857228|gb|ABY95636.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929889|gb|ADV80574.1| recombination helicase AddA [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 1233 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 41/205 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++ L+ +P LL +T T AAA+EM R+ E + A Sbjct: 22 VAAAAGSGKTAVLVERIINLITDEENPVDIDRLLVVTFTNAAASEMRERIAEALIA---- 77 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151 IL N D A L T+L + TIH+FC E + F L Sbjct: 78 ---ILDQ----------NPEDKRLANQL--TLLNKA---TITTIHSFCLEVVRNNFFL-L 118 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE----ISNDEDIETL 207 ++ +F I D+ ++ L EA + + +++ K+ F ++E +D+D++ + Sbjct: 119 DLDPNFRIGDDTETLLLQLEASEELFEEMYAKEDKD-KEGFLTLVESYGGTKDDQDLQDI 177 Query: 208 ISDIISNRTALKLIFFFFSYLWRRK 232 + L+L F S W K Sbjct: 178 L---------LRLYGFVRSLPWPEK 193 >gi|308188858|ref|YP_003932989.1| DNA helicase II [Pantoea vagans C9-1] gi|308059368|gb|ADO11540.1| DNA helicase II [Pantoea vagans C9-1] Length = 720 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 45/177 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SELLDGLNDNQRAAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 62 FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G+ + T H +++ L+A + F I D E +L+ K + S+ LD+ + Sbjct: 84 GMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKSMNLDDKQ 136 >gi|167038872|ref|YP_001661857.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter sp. X514] gi|300913540|ref|ZP_07130857.1| recombination helicase AddA [Thermoanaerobacter sp. X561] gi|307723445|ref|YP_003903196.1| recombination helicase AddA [Thermoanaerobacter sp. X513] gi|251764574|sp|B0K213|ADDA_THEPX RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|166853112|gb|ABY91521.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter sp. X514] gi|300890225|gb|EFK85370.1| recombination helicase AddA [Thermoanaerobacter sp. X561] gi|307580506|gb|ADN53905.1| recombination helicase AddA [Thermoanaerobacter sp. X513] Length = 1233 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 41/205 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++ L+ +P LL +T T AAA+EM R+ E + A Sbjct: 22 VAAAAGSGKTAVLVERIINLITDEENPVDIDRLLVVTFTNAAASEMRERIAEALIA---- 77 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151 IL N D A L T+L + TIH+FC E + F L Sbjct: 78 ---ILDQ----------NPEDKRLANQL--TLLNKA---TITTIHSFCLEVVRNNFFL-L 118 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE----ISNDEDIETL 207 ++ +F I D+ ++ L EA + + +++ K+ F ++E +D+D++ + Sbjct: 119 DLDPNFRIGDDTETLLLQLEASEELFEEMYAKEDKD-KEGFLTLVESYGGTKDDQDLQDI 177 Query: 208 ISDIISNRTALKLIFFFFSYLWRRK 232 + L+L F S W K Sbjct: 178 L---------LRLYGFVRSLPWPEK 193 >gi|124514961|gb|EAY56472.1| putative exodeoxyribonuclease V, beta subunit [Leptospirillum rubarum] Length = 1101 Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 15/169 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSHL 92 + A+AG+GKT L L ++L+ P +L +T T+AAA ++ R+ LE + W Sbjct: 21 IEASAGTGKTTTLALLYLSVILSGVSPENILVVTFTRAAAQDVRERIQKLLEDVRQWRSG 80 Query: 93 SD-EI---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 S EI L A + ++ P DM + R L+ P +QTIH+FC++++ Q Sbjct: 81 SKAEILPDLRAYLETLE-TDPLLLDM-RLREALVVFDRAP----IQTIHSFCQSLLSQMS 134 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 ++ + E+Q ++ E+ S+ + L + F + E Sbjct: 135 FLLGAPANLVLVPEDQP--VLYESSVRLWRSLFYGRDSRLAEFFLSVWE 181 >gi|218288826|ref|ZP_03493077.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1] gi|218240915|gb|EED08092.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1] Length = 613 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 30/150 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP----STLLCLTHTKAAAAEM----SHRVLEIIT 87 VSA AGSGKT +L +R+ L A P LL +T T+AAA EM R+ E Sbjct: 22 VSAGAGSGKTAVLAERIASL--AEEDPKLRMDELLVMTFTEAAAEEMRARIGRRLAERAA 79 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 W D SA+ + R L + + ++ TIH+FC ++++ Sbjct: 80 EWEKAGD---SAKARRF-------------RRLAQRVQDA----QISTIHSFCLSLLRDH 119 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTL 177 +EA + F + E+ L+ EA ++TL Sbjct: 120 AVEAGLVPGFRVLSGEEDAVLLREAAQATL 149 >gi|182412468|ref|YP_001817534.1| UvrD/REP helicase [Opitutus terrae PB90-1] gi|177839682|gb|ACB73934.1| UvrD/REP helicase [Opitutus terrae PB90-1] Length = 1109 Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 14/171 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT+ L R +RLL A P ++ LT T+ AA E +L + + + Sbjct: 9 ILASAGSGKTYALTNRFVRLLALGAAPERIVALTFTRKAAGEFFDEILNKLARAASDAAY 68 Query: 96 I--LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 L+AEI +P ++ LL +++ L++ TI F I + FPLE + Sbjct: 69 ARQLAAEI-----GRPAAMGTAEFLALLRRMVDAMHRLRLGTIDGFFARIARNFPLELGL 123 Query: 154 TSHFAIADE-----EQSKKLIEEAKKST--LASIMLDNNEELKKAFYEILE 197 F + +E E+S+ L + ++ T LA + E K+A + + E Sbjct: 124 AGEFELLEEHAARMERSRVLRQLFERPTDGLADAQREFIEAFKRATFGVEE 174 >gi|270264259|ref|ZP_06192526.1| DNA helicase II [Serratia odorifera 4Rx13] gi|270041908|gb|EFA15005.1| DNA helicase II [Serratia odorifera 4Rx13] Length = 723 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 7 SDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVT 64 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 65 FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 86 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H +++ ++AN+ F I D + +L++ K+ Sbjct: 87 GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQFRLLKRIVKA 132 >gi|284029231|ref|YP_003379162.1| ATP-dependent DNA helicase PcrA [Kribbella flavida DSM 17836] gi|283808524|gb|ADB30363.1| ATP-dependent DNA helicase PcrA [Kribbella flavida DSM 17836] Length = 773 Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L +R+ LL A +AHP ++L +T T AAAEM RV+E++ + L Sbjct: 48 VVAGAGSGKTRVLTRRIAYLLAARDAHPGSILAITFTNKAAAEMRERVVELVGPRAKL-- 105 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + V T H+ C I+++ I+ Sbjct: 106 ------------------------------------MWVSTFHSSCVRILRRDIKRFGIS 129 Query: 155 SHFAIADEEQSKKLI 169 S F+I D+ S++L+ Sbjct: 130 STFSIYDDTDSRRLM 144 >gi|313201054|ref|YP_004039712.1| uvrd/rep helicase [Methylovorus sp. MP688] gi|312440370|gb|ADQ84476.1| UvrD/REP helicase [Methylovorus sp. MP688] Length = 1141 Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 11/161 (6%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 + QEH D S+ ++ +L S V A AG+GKT +L QR L+LL P + Sbjct: 11 ALQEHLLAQDDESRRRALEL------ESFIVEAPAGAGKTELLTQRYLKLLTTVREPEEI 64 Query: 66 LCLTHTKAAAAEMSHRVLE-IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 + +T T AAAEM R+L+ ++ A S + T G+ + + HL Sbjct: 65 IAITFTNKAAAEMRARILDSLLMAGSGERPPQPHKQKTFALGQDALQHAAERGWHL---- 120 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 LE P L++ TI + + +Q PL + + A+ ++ + Sbjct: 121 LENPARLRIFTIDSLSSHLARQMPLMSRFGAQPAVTEDASA 161 >gi|154174808|ref|YP_001407581.1| putative recombination protein RecB [Campylobacter curvus 525.92] gi|112803782|gb|EAU01126.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter curvus 525.92] Length = 933 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 32/206 (15%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 R + A+AGSGKT L R + L+L+ A+ + ++ LT TK AA EM RV+E Sbjct: 3 RYLALKASAGSGKTFALSVRFIALILSGANIAEIVALTFTKKAANEMKERVVETFLNLEK 62 Query: 92 LSDEILS-AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 E+ + EI ++ K ++ + L++ LK+ T +F I++QF L Sbjct: 63 KPSELAAIREILELGEDKI----LALRDERMADFLQSD--LKIGTFDSFFTGILRQFSLN 116 Query: 151 ANITSHFAIADE---EQSKKLIEEAKKS-----TLASIMLDNNEELKKAFYEILE----- 197 +++ F+++ + Q +K +E+ + +LA ++ E+ + +F+E LE Sbjct: 117 LGLSADFSVSSDLTNLQRQKFVEKISRDPSLLRSLAEFIV-AAEKSQNSFFETLERFYEN 175 Query: 198 -----------ISNDEDIETLISDII 212 NDE + T + +++ Sbjct: 176 FDSVKADKDAKFPNDEAVRTALGNLL 201 >gi|325509678|gb|ADZ21314.1| ATP-dependent exonuclease (exonuclease V) synthesis protein AddA (helicase and exonuclease domains) [Clostridium acetobutylicum EA 2018] Length = 1250 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 27/131 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R+++++ +P LL +T T AAA+EM R+ + I Sbjct: 23 VAAAAGSGKTAVLVERIVKIITNEENPVDIDRLLVVTFTNAAASEMRERIGDAI------ 76 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151 + K+ + PN + K L+ G K+ TIH+FC + I F + Sbjct: 77 --------VNKL-CENPNSRVIQKQLALI-------GKSKITTIHSFCLDVIKNNFHM-L 119 Query: 152 NITSHFAIADE 162 ++ F + DE Sbjct: 120 DLDPDFRVGDE 130 >gi|304398155|ref|ZP_07380030.1| DNA helicase II [Pantoea sp. aB] gi|304354441|gb|EFM18813.1| DNA helicase II [Pantoea sp. aB] Length = 720 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 45/177 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SELLDGLNDNQRAAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 62 FTNKAAAEMRHRI-----------------------------------EHLIGT---SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G+ + T H +++ L+A + F I D E +L+ K + S+ LD+ + Sbjct: 84 GMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKSMNLDDKQ 136 >gi|290477108|ref|YP_003470021.1| DNA-dependent ATPase I and helicase II [Xenorhabdus bovienii SS-2004] gi|289176454|emb|CBJ83263.1| DNA-dependent ATPase I and helicase II [Xenorhabdus bovienii SS-2004] Length = 721 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 43/152 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ LL + NA P +++ +T T +AAEM HR+ +I Sbjct: 27 VLAGAGSGKTRVLVHRIAWLLSVENASPFSIMAVTFTNKSAAEMRHRIENLIGT------ 80 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + GG+ + T H+ +++ L+AN+ Sbjct: 81 --------------------------------SQGGMWIGTFHSLAHRLLRFHHLDANLP 108 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 F I D E +LI K + ++ LD+ + Sbjct: 109 QDFQILDSEDQHRLI----KRIIKAMNLDDKQ 136 >gi|283787510|ref|YP_003367375.1| DNA helicase II [Citrobacter rodentium ICC168] gi|282950964|emb|CBG90641.1| DNA helicase II [Citrobacter rodentium ICC168] Length = 720 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 45/177 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLTVENNSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G+ V T H +++ ++AN+ F I D E +L+ K + ++ LD+ + Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLMKAMNLDDKQ 136 >gi|148543293|ref|YP_001270663.1| recombination helicase AddA [Lactobacillus reuteri DSM 20016] gi|184152703|ref|YP_001841044.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri JCM 1112] gi|227364360|ref|ZP_03848453.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri MM2-3] gi|325683559|ref|ZP_08163075.1| exonuclease RexA [Lactobacillus reuteri MM4-1A] gi|251764530|sp|A5VHK2|ADDA_LACRD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|251764531|sp|B2G532|ADDA_LACRJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|148530327|gb|ABQ82326.1| Recombination helicase AddA [Lactobacillus reuteri DSM 20016] gi|183224047|dbj|BAG24564.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri JCM 1112] gi|227070673|gb|EEI09003.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri MM2-3] gi|324977909|gb|EGC14860.1| exonuclease RexA [Lactobacillus reuteri MM4-1A] Length = 1392 Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 22/192 (11%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T ++ +D + VSA+AGSGKT +LV R + L+ +L +T T AAA M Sbjct: 7 TPAQSKAINDRGENILVSASAGSGKTAVLVNRTIELIKEGQSIDRMLLVTFTDAAAKNMR 66 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 ++ A + KI N D+ R + + + TIHAF Sbjct: 67 DKI---------------RAALQKIVQDSANPKDL---RDRMSNQINRLAAADISTIHAF 108 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL---KKAFYE-I 195 C +++++ ++ F + +E + L++E ++ + N EE K +F E + Sbjct: 109 CLKLIKRYYYLIDLDPQFRLLTDETERLLLQEDVWHEVSEELYRNAEEKVSGKASFSELV 168 Query: 196 LEISNDEDIETL 207 L S+D D + L Sbjct: 169 LNFSSDRDDQGL 180 >gi|317494833|ref|ZP_07953244.1| DNA helicase II [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917158|gb|EFV38506.1| DNA helicase II [Enterobacteriaceae bacterium 9_2_54FAA] Length = 720 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 40/163 (24%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL++ +Q A + P + V A AGSGKT +LV R+ LL + N P +++ +T T Sbjct: 5 DLLNSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM HR+ HL+ T + GG+ Sbjct: 65 KAAAEMRHRI-----------------------------------EHLIGT---SQGGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + T H +++ L+AN+ F I D + +L++ K+ Sbjct: 87 IGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQLRLLKRIVKA 129 >gi|156935862|ref|YP_001439778.1| DNA-dependent helicase II [Cronobacter sakazakii ATCC BAA-894] gi|156534116|gb|ABU78942.1| hypothetical protein ESA_03745 [Cronobacter sakazakii ATCC BAA-894] Length = 720 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L++ N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLMMVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|209876554|ref|XP_002139719.1| UvrD/REP helicase domain-containing protein [Cryptosporidium muris RN66] gi|209555325|gb|EEA05370.1| UvrD/REP helicase domain-containing protein [Cryptosporidium muris RN66] Length = 985 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 78/150 (52%), Gaps = 12/150 (8%) Query: 23 EQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 EQ A D P S + A GSGKT + R+++ L+ P +L LT TK AA E+ Sbjct: 54 EQKKAVDVPPESSLLIVAGPGSGKTATITARIIKFLIEGYTP--ILALTFTKKAANELKS 111 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R I A+S S + +S E TK + + + +SK + + ++ T L + TIH+FC Sbjct: 112 R---INVAYSS-SLKSISIESTK----RNSVNHISKNSYNISSLSLTDKDLFIGTIHSFC 163 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIE 170 +++Q+ + S +AD+E K+++ Sbjct: 164 WKLLKQYGTAIGLPSKIEVADKEMMLKILK 193 >gi|283956857|ref|ZP_06374330.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni 1336] gi|283791583|gb|EFC30379.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni 1336] Length = 921 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 19/135 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + L+L + +L LT TK AA EM R++E A+ +L E Sbjct: 10 LEASAGSGKTFALSVRFVALILKGVRINEILALTFTKKAANEMQKRIIE---AFLNLEKE 66 Query: 96 ILSA---EITKIQGKKPNKSDM-----SKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 ++ E+ K+ GK +K ++ +K L T LK+ T AF I++ F Sbjct: 67 NKTSECNELCKLLGK--DKEELISLRDAKKEEFLRT------ELKISTFDAFFGKILRVF 118 Query: 148 PLEANITSHFAIADE 162 L ++S F +++E Sbjct: 119 ALNLGLSSDFTMSEE 133 >gi|227114721|ref|ZP_03828377.1| DNA-dependent helicase II [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 720 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D ++ + + + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SDLLDGLNDKQRDAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 62 FTNKAAAEMRHRI-----------------------------------DHLIGT---SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ + T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|15895530|ref|NP_348879.1| ATP-dependent exoDNAse beta subunit [Clostridium acetobutylicum ATCC 824] gi|81529946|sp|Q97GV3|ADDA_CLOAB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|15025265|gb|AAK80219.1|AE007727_3 ATP-dependent exonuclease (exonuclease V) synthesis protein AddA (helicase and exonuclease domains) [Clostridium acetobutylicum ATCC 824] Length = 1252 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 27/131 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R+++++ +P LL +T T AAA+EM R+ + I Sbjct: 25 VAAAAGSGKTAVLVERIVKIITNEENPVDIDRLLVVTFTNAAASEMRERIGDAI------ 78 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151 + K+ + PN + K L+ G K+ TIH+FC + I F + Sbjct: 79 --------VNKL-CENPNSRVIQKQLALI-------GKSKITTIHSFCLDVIKNNFHM-L 121 Query: 152 NITSHFAIADE 162 ++ F + DE Sbjct: 122 DLDPDFRVGDE 132 >gi|149178399|ref|ZP_01856989.1| UvrD/REP helicase [Planctomyces maris DSM 8797] gi|148842716|gb|EDL57089.1| UvrD/REP helicase [Planctomyces maris DSM 8797] Length = 1171 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 29/162 (17%) Query: 20 TKSEQLLASDPTR--SAWVSANAGSGKTHILVQRVLRLLLANAHPSTL---LCLTHTKAA 74 T ++Q A+ TR S +SA AG GKT +L QR L+L+ A P L + +T T+ A Sbjct: 6 TYTDQQAAAINTRDVSIALSAGAGCGKTFVLTQRFLKLIEPGAPPDRLSHIVAITFTERA 65 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ E + +++ P + + +A +I L++ ++ Sbjct: 66 AREMRDRIRETC--------------LDQLKNCPPEEVNHWQA---VIRGLDS---ARIS 105 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQS----KKLIEEA 172 TIH+FC +I++ + A + HF + ++ S +K++ EA Sbjct: 106 TIHSFCTSILRSHAVSARLDPHFGLLEQGTSDTFLRKVVHEA 147 >gi|253690332|ref|YP_003019522.1| DNA helicase II [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756910|gb|ACT14986.1| DNA helicase II [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 720 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D ++ + + + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SDLLDGLNDKQRDAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 62 FTNKAAAEMRHRI-----------------------------------DHLIGT---SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ + T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|167553866|ref|ZP_02347610.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321791|gb|EDZ09630.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 720 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLK 124 >gi|16762183|ref|NP_457800.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143672|ref|NP_807014.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161539|ref|ZP_03347249.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425413|ref|ZP_03358163.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213649574|ref|ZP_03379627.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865062|ref|ZP_03387181.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25290775|pir||AG0918 DNA helicase II [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504486|emb|CAD07941.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Typhi] gi|29139307|gb|AAO70874.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 720 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLK 124 >gi|322646964|gb|EFY43466.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|323227583|gb|EGA11739.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 720 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLK 124 >gi|253682207|ref|ZP_04863004.1| recombination helicase AddA [Clostridium botulinum D str. 1873] gi|253561919|gb|EES91371.1| recombination helicase AddA [Clostridium botulinum D str. 1873] Length = 1232 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 27/134 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 VSA AGSGKT +LV+R+++++ +P LL +T T AAA+EM R+ + I Sbjct: 23 VSAAAGSGKTAVLVERIIKMITDLKNPVDIDRLLVVTFTNAAASEMKERIAKAI------ 76 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151 GK+ K S+ +T+L + TIH+FC E I F Sbjct: 77 -------------GKELTKHPRSRQLQRQLTLLNRAS---ITTIHSFCLETIKNNFHY-I 119 Query: 152 NITSHFAIADEEQS 165 ++ F I DE ++ Sbjct: 120 DLDPSFRIGDETET 133 >gi|116328993|ref|YP_798713.1| exodeoxyribonuclease V, beta chain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330399|ref|YP_800117.1| exodeoxyribonuclease V, beta chain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121737|gb|ABJ79780.1| Exodeoxyribonuclease V, beta chain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124088|gb|ABJ75359.1| Exodeoxyribonuclease V, beta chain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 1054 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 69/134 (51%), Gaps = 31/134 (23%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWS 90 +S ++ A+AG+GKT+ +++ V L+ + P T +L LT+T+ AA E+ R Sbjct: 10 KSCFIEASAGTGKTYTIMEIVKDLIGEHGIPLTQILILTYTEKAAGELKER--------- 60 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 L +++++++TK +AR L + + TIH FC I+Q++P+E Sbjct: 61 -LRKKLIASDLTK------------EAREL--------DQVTISTIHGFCNMILQEYPVE 99 Query: 151 ANITSHFAIADEEQ 164 S + + D ++ Sbjct: 100 TETPSKWILTDSKE 113 >gi|43295|emb|CAA25043.1| unnamed protein product [Escherichia coli K-12] Length = 258 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ V T H +++ ++AN+ F I D E +L++ K+ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKA 129 >gi|326629622|gb|EGE35965.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 720 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLK 124 >gi|161505541|ref|YP_001572653.1| DNA-dependent helicase II [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866888|gb|ABX23511.1| hypothetical protein SARI_03706 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 720 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLK 124 >gi|16767221|ref|NP_462836.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167993889|ref|ZP_02574982.1| DNA helicase II [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197263905|ref|ZP_03163979.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|17865684|sp|Q05311|UVRD_SALTY RecName: Full=DNA helicase II gi|6960251|gb|AAF33441.1| 98% identity with E. coli DNA helicase (UVRD) (SP:P03018); contains similarity to Pfam family PF00580 (UvrD/REP helicase), score=812.9, E=1.2e-240, N=1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422515|gb|AAL22795.1| DNA-dependent ATPase I and helicase II [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197242160|gb|EDY24780.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205328129|gb|EDZ14893.1| DNA helicase II [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261249074|emb|CBG26935.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996230|gb|ACY91115.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160466|emb|CBW19996.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915069|dbj|BAJ39043.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225469|gb|EFX50526.1| ATP-dependent DNA helicase UvrD/PcrA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132298|gb|ADX19728.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 720 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLK 124 >gi|311281508|ref|YP_003943739.1| DNA helicase II [Enterobacter cloacae SCF1] gi|308750703|gb|ADO50455.1| DNA helicase II [Enterobacter cloacae SCF1] Length = 732 Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N+ P +++ +T Sbjct: 16 SYLLDSLNDKQREAVAA--PRTNMLVLAGAGSGKTRVLVHRIAWLLSVENSSPYSIMAVT 73 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 74 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 95 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ V T H +++ L+AN+ F I D E +L++ K+ Sbjct: 96 GMWVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLKRLIKA 141 >gi|260583800|ref|ZP_05851548.1| ATP-dependent nuclease subunit A [Granulicatella elegans ATCC 700633] gi|260158426|gb|EEW93494.1| ATP-dependent nuclease subunit A [Granulicatella elegans ATCC 700633] Length = 1244 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 19/127 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LV R++ + + +LL +T T+AAA EM R+ Sbjct: 28 VSASAGSGKTKVLVDRIMGYIEDGVNIDSLLIVTFTEAAAKEMKERLR------------ 75 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 T ++ ++D++K +H+ I L + TIH+FC +++++ + + Sbjct: 76 ------TNLEKAITKETDITK-KHMYIKQLSLLPNATISTIHSFCMKVIRRYFYLSQLDP 128 Query: 156 HFAIADE 162 F++ +E Sbjct: 129 VFSLLNE 135 >gi|205354488|ref|YP_002228289.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274269|emb|CAR39288.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 720 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLK 124 >gi|37528453|ref|NP_931798.1| DNA-dependent helicase II [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787891|emb|CAE17008.1| DNA helicase II [Photorhabdus luminescens subsp. laumondii TTO1] Length = 720 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 43/158 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ LL + A P +++ +T T AAAEM HR+ +I Sbjct: 21 PRTNMLVLAGAGSGKTRVLVHRIAWLLSVEKASPFSVMAVTFTNKAAAEMRHRIENLIGT 80 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + GG+ + T H +++ Sbjct: 81 --------------------------------------SQGGMWIGTFHGLAHRLLRAHH 102 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 L+AN+ F I D E +L+ K + ++ LD+ + Sbjct: 103 LDANLPQDFQILDSEDQNRLL----KRIIKAMNLDDKQ 136 >gi|56415805|ref|YP_152880.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182420|ref|YP_218837.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161617070|ref|YP_001591035.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168233884|ref|ZP_02658942.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238404|ref|ZP_02663462.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244640|ref|ZP_02669572.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263159|ref|ZP_02685132.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168822679|ref|ZP_02834679.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444550|ref|YP_002043181.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451500|ref|YP_002047963.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470536|ref|ZP_03076520.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734777|ref|YP_002116880.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197364735|ref|YP_002144372.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245946|ref|YP_002217880.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388338|ref|ZP_03214950.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930325|ref|ZP_03221302.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207859153|ref|YP_002245804.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224585766|ref|YP_002639565.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912954|ref|ZP_04656791.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|56130062|gb|AAV79568.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130053|gb|AAX67756.1| DNA-dependent ATPase I and helicase II [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161366434|gb|ABX70202.1| hypothetical protein SPAB_04903 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403213|gb|ACF63435.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409804|gb|ACF70023.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456900|gb|EDX45739.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710279|gb|ACF89500.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197096212|emb|CAR61809.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197288763|gb|EDY28138.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940462|gb|ACH77795.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605436|gb|EDZ03981.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320729|gb|EDZ05931.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205332069|gb|EDZ18833.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336527|gb|EDZ23291.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340965|gb|EDZ27729.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348080|gb|EDZ34711.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710956|emb|CAR35324.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470294|gb|ACN48124.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320088361|emb|CBY98121.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322613028|gb|EFY09979.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617384|gb|EFY14284.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625624|gb|EFY22446.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627047|gb|EFY23840.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631237|gb|EFY28000.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638270|gb|EFY34969.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642794|gb|EFY39381.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322650351|gb|EFY46764.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656358|gb|EFY52652.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657583|gb|EFY53853.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665994|gb|EFY62175.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666733|gb|EFY62910.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671024|gb|EFY67154.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679269|gb|EFY75321.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681673|gb|EFY77700.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686000|gb|EFY81988.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716913|gb|EFZ08484.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323192626|gb|EFZ77854.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196492|gb|EFZ81642.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203756|gb|EFZ88777.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205369|gb|EFZ90343.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210738|gb|EFZ95614.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215906|gb|EGA00639.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221399|gb|EGA05817.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323231768|gb|EGA15879.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236183|gb|EGA20260.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239580|gb|EGA23628.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244324|gb|EGA28332.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249579|gb|EGA33491.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250329|gb|EGA34215.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256536|gb|EGA40267.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259766|gb|EGA43399.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265174|gb|EGA48672.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268397|gb|EGA51869.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625668|gb|EGE32013.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 720 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLK 124 >gi|308064321|gb|ADO06208.1| putative recombination protein RecB [Helicobacter pylori Sat464] Length = 949 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 14/137 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + L E Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI---LQKE 66 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGG----------LKVQTIHAFCEAIMQ 145 L +E K + + K K R L + ++ +++ TI AF ++I++ Sbjct: 67 NLESEKEKEKSQNILKELEEKYR-LNPSFVQNSAQKIYQRFLNAEIRISTIDAFFQSILR 125 Query: 146 QFPLEANITSHFAIADE 162 +F ++++F + ++ Sbjct: 126 KFCWFVGLSANFEVNED 142 >gi|307132967|ref|YP_003884983.1| ATP-dependent DNA helicase UvrD/PcrA [Dickeya dadantii 3937] gi|306530496|gb|ADN00427.1| ATP-dependent DNA helicase UvrD/PcrA [Dickeya dadantii 3937] Length = 720 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 40/163 (24%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL+ +Q A TRS V A AGSGKT +LV R+ LL + N P +++ +T T Sbjct: 5 DLLDSLNDKQRDAVAATRSNMLVLAGAGSGKTRVLVHRIAWLLTVENCSPYSIMAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM HR+ D++L + GG+ Sbjct: 65 KAAAEMRHRI-----------DQLLGT---------------------------SQGGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + T H +++ L+A + F I D E +L++ K+ Sbjct: 87 IGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLKRLIKA 129 >gi|327441306|dbj|BAK17671.1| ATP-dependent exoDNAse beta subunit [Solibacillus silvestris StLB046] Length = 1239 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 38/186 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP----STLLCLTHTKAAAAEMSHRVLEIITAWSH 91 VSA AGSGKT +L++R+++ +LA LL +T T A+AAEM +R+ E Sbjct: 29 VSAAAGSGKTAVLIERLIQKMLAPEDKRIDVDELLVVTFTNASAAEMRNRMAEA------ 82 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 + K + PN + + LL ++ T+H+FC +I +++ Sbjct: 83 ---------LEKELAQNPNNQFLRRQLSLL-------NKAQISTLHSFCLSICREYAYTI 126 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISD 210 ++ F +A E++ L ++ +++D L+KA+ +E + E++ TLI Sbjct: 127 DLDPGFRLASTEEASLLQDD--------VLMDV---LEKAYRGDMEALFTKEELYTLIDS 175 Query: 211 IISNRT 216 S+R+ Sbjct: 176 FASDRS 181 >gi|168467634|ref|ZP_02701471.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195629989|gb|EDX48649.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 720 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLK 124 >gi|197247460|ref|YP_002148876.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211163|gb|ACH48560.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 720 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLK 124 >gi|327395987|dbj|BAK13409.1| DNA helicase II UvrD [Pantoea ananatis AJ13355] Length = 720 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + + + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SELLDGLNDKQRKAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ ++I + G Sbjct: 62 FTNKAAAEMRHRIEQLIGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ + T H +++ L+A + F I D E +L++ Sbjct: 84 GMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLK 124 >gi|229828348|ref|ZP_04454417.1| hypothetical protein GCWU000342_00406 [Shuttleworthia satelles DSM 14600] gi|229792942|gb|EEP29056.1| hypothetical protein GCWU000342_00406 [Shuttleworthia satelles DSM 14600] Length = 1315 Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 91/184 (49%), Gaps = 18/184 (9%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R VSA AGSGKT +LV+R++R+L P LL +T T+AAA EM ++ I Sbjct: 19 RDLLVSAAAGSGKTAVLVERIIRMLTDPDAPLDVDQLLVVTFTRAAAHEMKEKIRRAI-- 76 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 E ++ +++ K+ +S + L + ++ TI +FC +++ Sbjct: 77 -----QEAVNEARSQLDPTDRQKALLSHLQRQLTLVHSA----QITTIDSFCAYVVRNHF 127 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208 E ++ F IA+E + + + +E + +M ++ E +AF +++++ + + Sbjct: 128 NEIDLEPDFRIAEEGEIRLIAQE----VMDQLMDEHYEMEDQAFIDLVDLYARRGKDDAL 183 Query: 209 SDII 212 +D++ Sbjct: 184 ADML 187 >gi|322834927|ref|YP_004214954.1| DNA helicase II [Rahnella sp. Y9602] gi|321170128|gb|ADW75827.1| DNA helicase II [Rahnella sp. Y9602] Length = 720 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + P +++ +T Sbjct: 4 SDLLDSLNEKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLAVEKCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ ++I + G Sbjct: 62 FTNKAAAEMRHRIDQLIGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ + T H +++ L+AN+ F I D + +LI+ Sbjct: 84 GMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQIRLIK 124 >gi|315187403|gb|EFU21159.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578] Length = 1149 Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 28/60 (46%), Positives = 38/60 (63%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 +Q A + ++A V A AGSGKT +L +R LRL+ PS +L LT T+ AAAEM R+ Sbjct: 6 DQRRAVETEKTAVVIAGAGSGKTRVLTERYLRLVKNGMQPSRILALTFTRKAAAEMHERI 65 >gi|167034115|ref|YP_001669346.1| UvrD/REP helicase [Pseudomonas putida GB-1] gi|166860603|gb|ABY99010.1| UvrD/REP helicase [Pseudomonas putida GB-1] Length = 1061 Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 31/151 (20%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 SD R ++SA AGSGKT+ L + + + L + P ++ T T+ AAAE+ RV Sbjct: 2 SDNPRITFISAGAGSGKTYRLTELLYQELTSQQVQPEGIIATTFTRKAAAELRERVR--- 58 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 SHL D +G+ S M +AR + T+++ C +++ Sbjct: 59 ---SHLLD----------KGQVGLASAMGQAR--------------IGTVNSLCGQLLEH 91 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 F EA + + +EEQ+K L+ +A S L Sbjct: 92 FAFEAGMPPQQRVLEEEQAKVLLNQAVDSVL 122 >gi|81428521|ref|YP_395521.1| ATP-dependent exonuclease, subunit A (N terminal fragment), authentic frameshift [Lactobacillus sakei subsp. sakei 23K] gi|123564300|sp|Q38X69|ADDA_LACSS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|78610163|emb|CAI55212.1| ATP-dependent exonuclease, subunit A (N terminal fragment), authentic frameshift [Lactobacillus sakei subsp. sakei 23K] Length = 890 Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 31/195 (15%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T S+Q VSA+AGSGKT +LV RV++ +L TLL +T T+AAA EM Sbjct: 10 TPSQQAAVDHDGHDILVSASAGSGKTSVLVARVIQKILKGTDVDTLLVVTFTEAAATEMR 69 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + S + E + + Q ++++ T ++ T+HAF Sbjct: 70 QRIQAALRDASEKATEPAVKQRLRQQ----------------LSLVPTA---QISTLHAF 110 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C +++QF ++ I + + L + A++ LA + + +++AFY + Sbjct: 111 CLKVIKQF--------YYVIDRDPVFRLLSDTAERLLLADQVW---QRVREAFYNHEYVK 159 Query: 200 NDEDIETLISDIISN 214 +E +TL ++ N Sbjct: 160 ENEQ-DTLFYELAQN 173 >gi|302874683|ref|YP_003843316.1| recombination helicase AddA [Clostridium cellulovorans 743B] gi|307690704|ref|ZP_07633150.1| recombination helicase AddA [Clostridium cellulovorans 743B] gi|302577540|gb|ADL51552.1| recombination helicase AddA [Clostridium cellulovorans 743B] Length = 1287 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 27/130 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----LLCLTHTKAAAAEMSHRVLEIITAWSH 91 V+A AGSGKT +LV+R++ L++N T LL +T TKAAAAEM R+ + Sbjct: 26 VAAAAGSGKTAVLVERIIE-LVSNKEAKTDIDKLLVVTFTKAAAAEMRERI------GNA 78 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 L+++I N D R L++ + T+H+FC+++++ + + Sbjct: 79 LAEKI-----------SENPDDTHLHRQLVLL-----NKANITTMHSFCQSLIKNYFHKL 122 Query: 152 NITSHFAIAD 161 +I F I D Sbjct: 123 DIDPAFRIGD 132 >gi|229822911|ref|ZP_04448981.1| hypothetical protein GCWU000282_00203 [Catonella morbi ATCC 51271] gi|229787724|gb|EEP23838.1| hypothetical protein GCWU000282_00203 [Catonella morbi ATCC 51271] Length = 1311 Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 47/180 (26%), Positives = 88/180 (48%), Gaps = 23/180 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA+AGSGKT +L++R+L LL + A+ LL T T+AAA+EM R+ Sbjct: 32 VSASAGSGKTTVLIERILNHLLTHYANMDQLLVSTFTEAAASEMKARME----------- 80 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +++ +D ++ HL+ + P ++T+H+FC ++QQ+ + Sbjct: 81 -------NRLKQAVNQTADRAEQAHLVSQLQLLPAS-HIRTLHSFCLQVIQQYFYIIDFD 132 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS---NDEDIETLISDI 211 F + +E K L+ + L + + + +K F+ + + S +D+ + LI D+ Sbjct: 133 PSFRLLTDETQKSLLYQEVWQELMIDLAQDPDWQEKLFHLLAQFSPGPSDQGLYQLILDL 192 >gi|94677005|ref|YP_588596.1| DNA helicase II [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220155|gb|ABF14314.1| DNA helicase II [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 646 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 74/176 (42%), Gaps = 45/176 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + S P + V A AGSGKT +L R+ LL + N PS++L +T Sbjct: 4 SHLLDSLNNKQKEAV--SAPLGNILVLAGAGSGKTRVLTHRIAWLLAVENNPPSSILAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM +R+ I+ +H P Sbjct: 62 FTNKAATEMYYRIKNIL------------------------------GKH--------PC 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 G+ + T H+ I++ +EAN+ F I D E KL+ K + + LD N Sbjct: 84 GMWIGTFHSLAYRILRIHYIEANLPKDFHIIDSEDQHKLL----KRLIRYLNLDEN 135 >gi|154244732|ref|YP_001415690.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] gi|154158817|gb|ABS66033.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] Length = 1107 Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 7/126 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AG+GKT ++ RV LL++ A P ++ +T T+ AA+ + RV + D+ Sbjct: 23 VEAAAGTGKTALMAGRVTMLLMSGAEPRSIAAITFTELAASALGARVHRYV-------DD 75 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +L+ + K + R +L L TIHAFC+ I+ + +EA+I Sbjct: 76 LLAGRVPKPLREALPDGLTDAQRRILSEAAGKLDELTATTIHAFCQTIICSYAVEADIDP 135 Query: 156 HFAIAD 161 I D Sbjct: 136 GARILD 141 >gi|309805609|ref|ZP_07699651.1| ATP-dependent deoxyribonuclease subunit A domain protein [Lactobacillus iners LactinV 09V1-c] gi|308165047|gb|EFO67288.1| ATP-dependent deoxyribonuclease subunit A domain protein [Lactobacillus iners LactinV 09V1-c] Length = 144 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 28/159 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLK 132 +EM R+ I KI+ + N K ++K Sbjct: 61 SEMKLRIKNAIK--------------NKIKEQPDNLFLKQQLAKV-----------DIAN 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 + TI +FC ++++F N+ +F+I ++ L++E Sbjct: 96 ISTIDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKE 134 >gi|169342971|ref|ZP_02863999.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens C str. JGS1495] gi|169298880|gb|EDS80954.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens C str. JGS1495] Length = 876 Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 95/211 (45%), Gaps = 49/211 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 +I+ + +Q + ++ + + A+AG+GKT+ L +RV ++ N+ PS +LC+T T A Sbjct: 7 MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 EMS RV++I+ + EIT ++ Sbjct: 67 CKEMSDRVMKIVGGEAK--------EIT------------------------------IR 88 Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190 T H+FC +++ + +I S F I DE+ K++I + S ++ N +++K Sbjct: 89 TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCKEVINKLSYYYATSNLMATNMQIQKVID 148 Query: 191 ------AFYEILEISNDEDIETLISDIISNR 215 A E LE ++ +T+I +I R Sbjct: 149 FIKVERARIETLEDRVLDEYKTVIDEIFKFR 179 >gi|331268546|ref|YP_004395038.1| ATP-dependent nuclease subunit A [Clostridium botulinum BKT015925] gi|329125096|gb|AEB75041.1| ATP-dependent nuclease subunit A [Clostridium botulinum BKT015925] Length = 1244 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 27/134 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 VSA AGSGKT +LV+R+++++ +P LL +T T AAA+EM R+ + I Sbjct: 34 VSAAAGSGKTAVLVERIIKMITDLKNPVDIDRLLVVTFTNAAASEMKERIAKAI------ 87 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151 GK+ K S+ +T+L + TIH+FC E I F Sbjct: 88 -------------GKELTKHPKSRQLQRQLTLLNRAS---ITTIHSFCLETIKNNFHY-I 130 Query: 152 NITSHFAIADEEQS 165 ++ F I DE ++ Sbjct: 131 DLDPSFRIGDETET 144 >gi|194467461|ref|ZP_03073448.1| recombination helicase AddA [Lactobacillus reuteri 100-23] gi|194454497|gb|EDX43394.1| recombination helicase AddA [Lactobacillus reuteri 100-23] Length = 1392 Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 22/192 (11%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T ++ +D + VSA+AGSGKT +LV R + L+ +L +T T AAA M Sbjct: 7 TPAQSKAINDRGENILVSASAGSGKTAVLVNRTIELIKEGQSIDRMLLVTFTDAAAKNMR 66 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 ++ A + KI N D+ R + + + TIHAF Sbjct: 67 DKI---------------RAALQKIVQDSANPKDL---RDRMSNQINRLAAADISTIHAF 108 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL---KKAFYE-I 195 C +++++ ++ F + +E + L++E ++ + N EE + +F E + Sbjct: 109 CLKLIKRYYYLIDLDPQFRLLTDETERLLLQEDVWHEVSEELYKNAEEKVPGRASFSELV 168 Query: 196 LEISNDEDIETL 207 L S+D D + L Sbjct: 169 LNFSSDRDDQGL 180 >gi|291085881|ref|ZP_06354319.2| DNA helicase II [Citrobacter youngae ATCC 29220] gi|291069706|gb|EFE07815.1| DNA helicase II [Citrobacter youngae ATCC 29220] Length = 738 Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 22 SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLTVENNSPYSIMAVT 79 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +I+ + G Sbjct: 80 FTNKAAAEMRHRIGQIMGT--------------------------------------SQG 101 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ V T H +++ ++AN+ F I D E +L++ K+ Sbjct: 102 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKA 147 >gi|255655059|ref|ZP_05400468.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-23m63] gi|296451046|ref|ZP_06892788.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP08] gi|296880601|ref|ZP_06904563.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP07] gi|296260053|gb|EFH06906.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP08] gi|296428555|gb|EFH14440.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP07] Length = 1275 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 29/180 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R+++++ + +P LL +T T AAA+EM R+ + I Sbjct: 23 VAAAAGSGKTAVLVERIIQMITSRENPIDIDKLLVVTFTNAAASEMRERIGDAI------ 76 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 GK +++ +K + +L + TIH+FC +++ + Sbjct: 77 -------------GKALDENPENKHLQNQLVLLNKSS---ITTIHSFCLDVIKSNFHRIS 120 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212 + +F I D+ + L +EA + + D EE + F ++E + + + DII Sbjct: 121 LDPNFRIGDQTECAILKQEA----IEEVFEDLYEERDEGFLNLVESYAERGGDKEVQDII 176 >gi|323943785|gb|EGB39880.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Escherichia coli H120] Length = 228 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ V T H +++ ++AN+ F I D E +L++ K+ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKA 129 >gi|302385434|ref|YP_003821256.1| recombination helicase AddA [Clostridium saccharolyticum WM1] gi|302196062|gb|ADL03633.1| recombination helicase AddA [Clostridium saccharolyticum WM1] Length = 1229 Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats. Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 25/149 (16%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 I T+ ++ + R+ VSA AGSGKT +LV+R++R++ P LL +T TKA Sbjct: 3 ICWTEEQKAVIESRNRNLLVSAAAGSGKTAVLVERIIRMITEGESPLRIDQLLVMTFTKA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RVL+ + DE L + P+ + HL + P ++ Sbjct: 63 AADEMRERVLKAV-------DEKLV--------ENPDSA------HLQMQAAMIPYA-QI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADE 162 TI +FC +++ + +I F + DE Sbjct: 101 TTIDSFCLGLIRDHYNKLDIDPAFRVGDE 129 >gi|261415282|ref|YP_003248965.1| ATP-dependent DNA helicase, RecQ family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371738|gb|ACX74483.1| ATP-dependent DNA helicase, RecQ family [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327939|gb|ADL27140.1| ATP-dependent DNA helicase, RecQ family/UvrD/REP helicase domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1655 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 19/100 (19%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85 V A GSGKTH+LV +V LL + A P ++LCLT+T+AA E+ R+ ++ Sbjct: 1079 VGAGPGSGKTHLLVHKVASLLWIEEAKPDSILCLTYTRAACRELKKRLFDLAGPLAAKVN 1138 Query: 86 ITAWSHLSDEILSAEITKIQGKKP---NKSD-MSKARHLL 121 IT + L+ IL +QG K N D +SKA LL Sbjct: 1139 ITTFHSLAFSILG-----VQGNKKALENADDVVSKAAELL 1173 >gi|224476068|ref|YP_002633674.1| putative ATP-dependent nuclease subunit A [Staphylococcus carnosus subsp. carnosus TM300] gi|251764540|sp|B9DIS2|ADDA_STACT RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|222420675|emb|CAL27489.1| putative ATP-dependent nuclease, subunit A [Staphylococcus carnosus subsp. carnosus TM300] Length = 1220 Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R++ R+L LL +T T +A EM HRV Sbjct: 28 VAAAAGSGKTAVLVERIIQRILRDEIDVDRLLVVTFTNLSAREMKHRV------------ 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I K + P+ + + R + I + ++ T+H+FC ++QQ +I Sbjct: 76 ---EKRIQKASLEDPSNTHLKNQR---VKIHQA----QISTLHSFCLKLIQQHYDVLDID 125 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ EL AF ++ E +S+D E L Sbjct: 126 PNFRTSSEAENILLLEQ----TIDEVLEKYYAELNPAFIDLSEQLSSDRSDERL------ 175 Query: 214 NRTALKLIFFF 224 R +K +++F Sbjct: 176 -RQIIKSVYYF 185 >gi|320178104|gb|EFW53084.1| ATP-dependent DNA helicase UvrD/PcrA [Shigella boydii ATCC 9905] Length = 720 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ ++++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMST--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|188026352|ref|ZP_02961779.2| hypothetical protein PROSTU_03845 [Providencia stuartii ATCC 25827] gi|188020076|gb|EDU58116.1| hypothetical protein PROSTU_03845 [Providencia stuartii ATCC 25827] Length = 723 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 39/147 (26%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ L+ + +A P +++ +T T AAAEM HR+ ++I + Sbjct: 24 PRTNLLVLAGAGSGKTRVLVHRIAWLMAVEHASPFSIMAVTFTNKAAAEMRHRINQLIGS 83 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + GG+ + T H +++Q Sbjct: 84 --------------------------------------SEGGMWIGTFHGLAHRLLRQHY 105 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKS 175 L+A + F I D + +LI K+ Sbjct: 106 LDAGLPQDFQILDSDDQYRLIRRLLKA 132 >gi|237727929|ref|ZP_04558410.1| DNA helicase II [Citrobacter sp. 30_2] gi|226910378|gb|EEH96296.1| DNA helicase II [Citrobacter sp. 30_2] Length = 738 Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 22 SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLTVENNSPYSIMAVT 79 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +I+ + G Sbjct: 80 FTNKAAAEMRHRIGQIMGT--------------------------------------SQG 101 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ V T H +++ ++AN+ F I D E +L++ K+ Sbjct: 102 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKA 147 >gi|75760177|ref|ZP_00740235.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492341|gb|EAO55499.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 757 Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|332169838|gb|AEE19093.1| UvrD/REP helicase [Krokinobacter diaphorus 4H-3-7-5] Length = 1046 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 28/165 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL 92 ++A+AGSGKT+ LV++ + LL + + LL +T T A AEM +RVL+ + H Sbjct: 10 LNASAGSGKTYSLVKQYITTLLKSNDANKFRHLLAITFTNKAVAEMKNRVLDTLKNIGHY 69 Query: 93 SDEILSAEITKIQGKKPNKSD-------------MSKARHLLITILETPGGLKVQTIHAF 139 + KKP+ D + KA+ +L IL + TI Sbjct: 70 ----------EPGNKKPDMIDDLVSSSGLSEDVVIKKAKEILNRILHNYAAFDIVTIDTL 119 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 I++ F + NI+S F ++ ++ K L +A + +A + +D+ Sbjct: 120 THRIIRTFAKDLNISSSFEVSLDQ--KTLNAQAVDALIAKVGIDD 162 >gi|89901667|ref|YP_524138.1| UvrD/REP helicase [Rhodoferax ferrireducens T118] gi|89346404|gb|ABD70607.1| UvrD/REP helicase [Rhodoferax ferrireducens T118] Length = 1165 Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 16/139 (11%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLCLTHTKAAAA 76 +A DP RS V A AG+GKT +LV R++R LL P +L +T TK AA+ Sbjct: 25 IACDPRRSVAVEACAGAGKTWMLVSRIVRALLDGVDASSGELRVQPHEILAITFTKRAAS 84 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGK------KPNKSDMSKARHLLITILETPGG 130 EM R+ + + ++ L E+T ++G P + L IL + Sbjct: 85 EMRERLYQWLAEFAVADRATLLKELT-LRGVLDKNELHPPSVLPEQLSKLYQNILRSGRQ 143 Query: 131 LKVQTIHAFCEAIMQQFPL 149 ++V+T H++ A+++ PL Sbjct: 144 VQVRTFHSWFAALLRSAPL 162 >gi|47567601|ref|ZP_00238312.1| reticulocyte binding protein [Bacillus cereus G9241] gi|47555796|gb|EAL14136.1| reticulocyte binding protein [Bacillus cereus G9241] Length = 1241 Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLINEPGSQHIRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|309807505|ref|ZP_07701464.1| UvrD/REP helicase [Lactobacillus iners LactinV 01V1-a] gi|308169255|gb|EFO71314.1| UvrD/REP helicase [Lactobacillus iners LactinV 01V1-a] Length = 491 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 35/215 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA+EM R+ I Sbjct: 2 VSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAASEMKLRIKNAIK-------- 53 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 KI+ + N L L + TI +FC ++++F N+ Sbjct: 54 ------NKIKEQPDN--------LFLKQQLAKVDIANISTIDSFCLEVIRKFYYVINLDP 99 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS-- 213 +F+I ++ L++E +N ++ FY + D ++E S ++ Sbjct: 100 NFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN--NFAGDREVEAARSMLLELY 157 Query: 214 -------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239 N A +L FF+ + + II +LW Sbjct: 158 YVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 192 >gi|256819097|ref|YP_003140376.1| UvrD/REP helicase [Capnocytophaga ochracea DSM 7271] gi|256580680|gb|ACU91815.1| UvrD/REP helicase [Capnocytophaga ochracea DSM 7271] Length = 1060 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 76/144 (52%), Gaps = 12/144 (8%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +A+AGSGKT+ LV+ LR++L + P LL +T T A EM +R++E++ +S Sbjct: 12 NASAGSGKTYSLVKAYLRIILGSKQPDLFRQLLAITFTNKAVFEMKNRIIELLGVFS--E 69 Query: 94 DEILS---AEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 D++L+ A T++ + P++ +++ L IL + TI F +++ F Sbjct: 70 DKMLTKPHAMFTELAKELNLPDEELRTRSAKALEHILHNYAAFNISTIDGFNHQLIRHFS 129 Query: 149 LEANITSHFAIADEEQSKKLIEEA 172 + ++ F + + SK L+E A Sbjct: 130 QDLHLNPFFEV--QLDSKALLERA 151 >gi|260596037|ref|YP_003208608.1| DNA-dependent helicase II [Cronobacter turicensis z3032] gi|260215214|emb|CBA27073.1| DNA helicase II [Cronobacter turicensis z3032] Length = 736 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L++ N P +++ +T Sbjct: 20 SYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLMMVENCSPYSIMAVT 77 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 78 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 99 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ V T H +++ ++AN+ F I D E +L++ K+ Sbjct: 100 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKA 145 >gi|49480014|ref|YP_035378.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|81613917|sp|Q6HM43|ADDA_BACHK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|49331570|gb|AAT62216.1| ATP-dependent nuclease, subunit A [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 1241 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDEPGSQHIRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|184154513|ref|YP_001842853.1| ATP-dependent nuclease subunit A [Lactobacillus fermentum IFO 3956] gi|251764528|sp|B2GEY4|ADDA_LACF3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|183225857|dbj|BAG26373.1| ATP-dependent nuclease subunit A [Lactobacillus fermentum IFO 3956] Length = 1337 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 37/172 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL----LLANAHPST------L 65 + + +K ++ +D + VSA+AGSGKT +LV+RV++L L +A PS + Sbjct: 2 VFTPSKEQEPAINDRQKDILVSASAGSGKTAVLVERVIQLMETGLSKDAKPSERPNIDDI 61 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T AA M R+ + +DE + A++ AR L I Sbjct: 62 LMVTFTTDAAKNMRDRIRRRLVG---ATDEHMKAQV---------------ARLALANI- 102 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 TIH+FCE +++++ ++ F + D+ + + L E+A ++TL Sbjct: 103 --------STIHSFCEQLIKRYYYVIDLDPQFRLIDDAEQQLLKEQAWQATL 146 >gi|218896177|ref|YP_002444588.1| ATP-dependent nuclease, subunit A [Bacillus cereus G9842] gi|251764501|sp|B7IL84|ADDA_BACC2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|218544151|gb|ACK96545.1| ATP-dependent nuclease, subunit A [Bacillus cereus G9842] Length = 1241 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|52144188|ref|YP_082640.1| ATP-dependent nuclease, subunit A [Bacillus cereus E33L] gi|81689028|sp|Q63EM2|ADDA_BACCZ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|51977657|gb|AAU19207.1| ATP-dependent nuclease, subunit A [Bacillus cereus E33L] Length = 1241 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|332178959|gb|AEE14648.1| UvrD/REP helicase [Thermodesulfobium narugense DSM 14796] Length = 1040 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 22/131 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLA----NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS- 90 VSA+AGSGKT+ L R + LL+ N + S ++ LT TK AA EM R+LE + S Sbjct: 25 VSASAGSGKTYTLCMRFCQFLLSKCIQNNNLSNIIALTFTKNAANEMKQRILEWLKRISL 84 Query: 91 -HLSD-------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 LS+ E+LS +I ++++ L+ I +V TI +F Sbjct: 85 GLLSEDDKNNLIELLSLPFNEI---------VTRSEKLIDLIFNNFYEFQVSTIDSFMSK 135 Query: 143 IMQQFPLEANI 153 I + E NI Sbjct: 136 IFKVMAFETNI 146 >gi|283953895|ref|ZP_06371425.1| LOW QUALITY PROTEIN: ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni 414] gi|283794674|gb|EFC33413.1| LOW QUALITY PROTEIN: ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni 414] Length = 392 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 15/134 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + ++AGSGKT L R + L+L A + +L LT TK AA EM R++E + Sbjct: 10 LESSAGSGKTFALSVRFVALILKGAKINEILALTFTKKAANEMQKRIVETFLNLEKENKT 69 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPG------GLKVQTIHAFCEAIMQQFPL 149 E+ K+ + K++ LI++ +T LK+ T AF I++ F L Sbjct: 70 SECNELCKL---------LDKSKKELISLRDTKKEEFLRTELKISTFDAFFGKILRVFAL 120 Query: 150 EANITSHFAIADEE 163 ++S F +++E+ Sbjct: 121 NLGLSSDFTMSEEK 134 >gi|169343377|ref|ZP_02864381.1| ATP-dependent nuclease, subunit A [Clostridium perfringens C str. JGS1495] gi|169298463|gb|EDS80549.1| ATP-dependent nuclease, subunit A [Clostridium perfringens C str. JGS1495] Length = 1271 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 36/214 (16%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 TK ++L + + V+A AGSGKT +LV+R+++++ +P LL +T T AAA+ Sbjct: 6 TKEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAAS 65 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ I+K K P+ + + LL + T+ Sbjct: 66 EMRERI---------------GDAISKALEKDPSSEVLQRQLALL-------NRASITTM 103 Query: 137 HAFC-EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H+FC E I F L ++ F I D+ + E K+ LA + D + + F ++ Sbjct: 104 HSFCLEVIKNNFHL-IDLDPGFRIGDQTEC----ELIKQDILADLFEDMYAKDDECFKDL 158 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLW 229 +E + ++ II LK F S W Sbjct: 159 VEAYGGSKSDDNLNSII-----LKFYNFIMSGPW 187 >gi|42780319|ref|NP_977566.1| ATP-dependent nuclease, subunit A [Bacillus cereus ATCC 10987] gi|81569872|sp|Q73C23|ADDA_BACC1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|42736238|gb|AAS40174.1| ATP-dependent nuclease, subunit A [Bacillus cereus ATCC 10987] Length = 1241 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDEPGSQHIRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|324325258|gb|ADY20518.1| ATP-dependent nuclease, subunit A [Bacillus thuringiensis serovar finitimus YBT-020] Length = 1241 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDEPGSQHIRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|261823387|ref|YP_003261493.1| DNA-dependent helicase II [Pectobacterium wasabiae WPP163] gi|261607400|gb|ACX89886.1| DNA helicase II [Pectobacterium wasabiae WPP163] Length = 720 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 40/158 (25%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL+ +Q A + P + V A AGSGKT +LV R+ LL + N P +++ +T T Sbjct: 5 DLLDGLNDKQRAAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM HR+ HL+ T + GG+ Sbjct: 65 KAAAEMRHRI-----------------------------------NHLIGT---SQGGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 + T H +++ ++AN+ F I D + +L++ Sbjct: 87 IGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLK 124 >gi|206976508|ref|ZP_03237414.1| ATP-dependent nuclease, subunit A [Bacillus cereus H3081.97] gi|222094863|ref|YP_002528923.1| ATP-dependent nuclease, subunit a [Bacillus cereus Q1] gi|251764505|sp|B9ITE9|ADDA_BACCQ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|206745191|gb|EDZ56592.1| ATP-dependent nuclease, subunit A [Bacillus cereus H3081.97] gi|221238921|gb|ACM11631.1| ATP-dependent nuclease, subunit A [Bacillus cereus Q1] Length = 1241 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDEPGSQHIRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|217958719|ref|YP_002337267.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH187] gi|251764503|sp|B7HZR5|ADDA_BACC7 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|217066718|gb|ACJ80968.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH187] Length = 1241 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDEPGSQHIRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|50123099|ref|YP_052266.1| DNA-dependent helicase II [Pectobacterium atrosepticum SCRI1043] gi|49613625|emb|CAG77076.1| DNA helicase II [Pectobacterium atrosepticum SCRI1043] Length = 720 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 40/158 (25%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL+ +Q A + P + V A AGSGKT +LV R+ LL + N P +++ +T T Sbjct: 5 DLLDGLNDKQRAAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM HR+ HL+ T + GG+ Sbjct: 65 KAAAEMRHRI-----------------------------------NHLIGT---SQGGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 + T H +++ ++AN+ F I D + +L++ Sbjct: 87 IGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLK 124 >gi|167765657|ref|ZP_02437710.1| hypothetical protein CLOSS21_00145 [Clostridium sp. SS2/1] gi|167712632|gb|EDS23211.1| hypothetical protein CLOSS21_00145 [Clostridium sp. SS2/1] gi|291559893|emb|CBL38693.1| recombination helicase AddA, Firmicutes type [butyrate-producing bacterium SSC/2] Length = 1188 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 25/146 (17%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 TK +Q + VSA AGSGKT +LV+R+++ + HP LL +T TKAAA Sbjct: 4 TKQQQKVIDQRDADILVSAAAGSGKTAVLVERIIQKITDEKHPIDVDHLLVVTFTKAAAG 63 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R++ L ++ + G + +S IT TI Sbjct: 64 EMKERIM-----------AALDEKVREFPGNQHFVKQLSLIHKAQIT-----------TI 101 Query: 137 HAFCEAIMQQFPLEANITSHFAIADE 162 H+FC +++ + I + A DE Sbjct: 102 HSFCMNLIRDYFYVLGIDPNTAPGDE 127 >gi|319957659|ref|YP_004168922.1| uvrd/rep helicase [Nitratifractor salsuginis DSM 16511] gi|319420063|gb|ADV47173.1| UvrD/REP helicase [Nitratifractor salsuginis DSM 16511] Length = 915 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 6/151 (3%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 +SA+AGSGKT L R + LL S++L T T AAAEM HRV+E + Sbjct: 9 LSASAGSGKTFALSVRYVALLFLGESSSSILAATFTNKAAAEMRHRVVEALRRLDEADFA 68 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 E+ K G P++ ++K +L L++P + T+ +F ++++ LE + Sbjct: 69 PFLGELAKQTGLSPDEI-LAKRPGVLRRFLDSP--THIVTLDSFFVSVLKAGALEIGLDP 125 Query: 156 HFAIADEEQ---SKKLIEEAKKSTLASIMLD 183 F +E + +EE + + ++++ Sbjct: 126 GFVTKEEASVGLQEAFLEELDREGMLPVLVE 156 >gi|284032499|ref|YP_003382430.1| UvrD/REP helicase [Kribbella flavida DSM 17836] gi|283811792|gb|ADB33631.1| UvrD/REP helicase [Kribbella flavida DSM 17836] Length = 1239 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 26/172 (15%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKA 73 +L+ EQ+ +D + +V A AGSGKTH LV RV L+L + P T+ +T T+ Sbjct: 3 ELLDDAAREQI-RTDTDTTLFVEAGAGSGKTHALVDRVTTLVLRDEVPLRTIAAVTFTEK 61 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 A AE+ R L E K + K P+++ +A L+ + Sbjct: 62 AGAELRDR---------------LRVEFEKAR-KGPHRALADEA-------LDDLDSASI 98 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 T+H+F + I+ P+EA + + DE S EE + S L +LD++ Sbjct: 99 GTLHSFAQQILLAHPIEAGLPPLIDVLDEVGSSVAFEE-RWSELQQQLLDDD 149 >gi|213961804|ref|ZP_03390070.1| UvrD/REP family helicase [Capnocytophaga sputigena Capno] gi|213955593|gb|EEB66909.1| UvrD/REP family helicase [Capnocytophaga sputigena Capno] Length = 1060 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 77/145 (53%), Gaps = 14/145 (9%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +A+AGSGKT+ LV+ L+++L + +P LL +T T A EM +R++E++ +S Sbjct: 11 NASAGSGKTYSLVKAYLQIILGSKYPDLFRQLLAITFTNKAVFEMKNRIIELLGVFSE-- 68 Query: 94 DEILS------AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 D++L+ +E+ K K P++ ++ L IL + TI F ++++F Sbjct: 69 DKMLTNPHPMFSELAK-DLKLPDEELRMRSAKTLEHILHNYAAFNISTIDGFNHQLIRRF 127 Query: 148 PLEANITSHFAIADEEQSKKLIEEA 172 + ++ F + + SK L+E A Sbjct: 128 SHDLHLNPFFEV--QLDSKALLERA 150 >gi|218902338|ref|YP_002450172.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH820] gi|251764500|sp|B7JDU4|ADDA_BACC0 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|218537459|gb|ACK89857.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH820] Length = 1240 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|330684454|gb|EGG96177.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus epidermidis VCU121] Length = 1220 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R++ R+L LL +T T +A EM HRV + Sbjct: 28 VAAAAGSGKTAVLVERIIQRILRDEIDVDRLLVVTFTNLSAREMKHRV----------NQ 77 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I + PN + R I I + ++ T+H+FC ++QQ +I Sbjct: 78 RIQQASI-----EDPNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLDID 125 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + ++L F ++ E +SND Sbjct: 126 PNFRTSSEAENILLLEQ----TIDEVLEQHYDKLNPDFIDLTEQLSNDRSDTQF------ 175 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 176 -RNMIKQLYFF 185 >gi|321159776|pdb|3LFU|A Chain A, Crystal Structure Of E. Coli Uvrd Length = 647 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|262273203|ref|ZP_06051019.1| ATP-dependent DNA helicase UvrD/PcrA [Grimontia hollisae CIP 101886] gi|262222781|gb|EEY74090.1| ATP-dependent DNA helicase UvrD/PcrA [Grimontia hollisae CIP 101886] Length = 725 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 41/160 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S ID ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 4 SHLIDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLVHRIAWLMQVEYASPFSVMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ ++ +QG T Sbjct: 62 FTNKAAAEMRGRIEQL------------------MQG--------------------TAS 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 GL T H C I++ L+AN+ F I D + ++L+ Sbjct: 84 GLWCGTFHGLCHRILRAHHLDANLPQDFQILDSDDQQRLL 123 >gi|253996791|ref|YP_003048855.1| UvrD/REP helicase [Methylotenera mobilis JLW8] gi|253983470|gb|ACT48328.1| UvrD/REP helicase [Methylotenera mobilis JLW8] Length = 1118 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 19/122 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AG+GKT +L QR L+LL P ++ +T T AAAEM R+L D Sbjct: 30 VEAPAGAGKTELLTQRYLKLLQTVNAPEEIIAITFTNKAAAEMRLRIL----------DS 79 Query: 96 ILSAEITKIQGKKPNKS--------DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 +L A+ +K +P+K + +++ ++E P L++ TI + C + +Q Sbjct: 80 LLKAD-SKEMPAQPHKQITYELSLKALQQSKQKNWQLIENPSRLRIFTIDSLCAHLARQM 138 Query: 148 PL 149 PL Sbjct: 139 PL 140 >gi|332179303|gb|AEE14992.1| UvrD/REP helicase [Thermodesulfobium narugense DSM 14796] Length = 610 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 66/159 (41%), Gaps = 39/159 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 +DL ++ + SD +R+ + A AG+GKT +L R RL+ N LL LT TK Sbjct: 1 MDLNLNEDQKRAVYSD-SRALLIVAGAGTGKTRVLTTRAARLIKENPDARYLL-LTFTKK 58 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM+ RV E+I +T L Sbjct: 59 AAREMTTRVRELIEE-------------------------------------DTKNRLYS 81 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 T H+FC I+++ +T+ F I DE S L+++ Sbjct: 82 GTFHSFCSNIIRRRSERVGLTNDFVIIDESDSLDLMKKV 120 >gi|327404466|ref|YP_004345304.1| UvrD/REP helicase [Fluviicola taffensis DSM 16823] gi|327319974|gb|AEA44466.1| UvrD/REP helicase [Fluviicola taffensis DSM 16823] Length = 1049 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 7/131 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLA----NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 V+A+AGSGKT+ LV+ LRLLL A ++ +T T A+ EM R++ + +H Sbjct: 12 VNASAGSGKTYNLVRNYLRLLLTEEFDRAEIGQIMAMTFTNKASIEMKSRIMSDLNKLAH 71 Query: 92 LSDEILSA--EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 +E E + G P +S KA+ +L IL V TI F +++ F Sbjct: 72 GKEESRDYLIETAQFVGASP-ESIQKKAQIVLSKILHQYEDFNVMTIDKFNLKLIRSFSK 130 Query: 150 EANITSHFAIA 160 + ++ +F I+ Sbjct: 131 DLDLPDNFEIS 141 >gi|301052778|ref|YP_003790989.1| ATP-dependent nuclease subunit A [Bacillus anthracis CI] gi|300374947|gb|ADK03851.1| ATP-dependent nuclease, subunit A [Bacillus cereus biovar anthracis str. CI] Length = 1241 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNAIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|257054559|ref|YP_003132391.1| ATP-dependent DNA helicase PcrA [Saccharomonospora viridis DSM 43017] gi|256584431|gb|ACU95564.1| ATP-dependent DNA helicase PcrA [Saccharomonospora viridis DSM 43017] Length = 817 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 39/139 (28%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 R + A AGSGKT +L +R+ LL A HP ++ +T T AAAEM RV++++ + Sbjct: 38 RPLLIVAGAGSGKTRVLTRRIAYLLAARGVHPGQIMAITFTNKAAAEMRDRVVDLVGGRA 97 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 G + V T H+ C ++++ Sbjct: 98 --------------------------------------GAMWVSTFHSMCVRLLRREAKT 119 Query: 151 ANITSHFAIADEEQSKKLI 169 +TS+F+I D + S++L+ Sbjct: 120 LELTSNFSIYDADDSRRLM 138 >gi|289807663|ref|ZP_06538292.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 120 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 39/143 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ LL + N P +++ +T T AAAEM HR+ +++ Sbjct: 13 PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVTFTNKAAAEMRHRIGQLMGT 72 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + GG+ V T H +++ Sbjct: 73 --------------------------------------SQGGMWVGTFHGLAHRLLRAHH 94 Query: 149 LEANITSHFAIADEEQSKKLIEE 171 ++AN+ F I D E +L++ Sbjct: 95 MDANLPQDFQILDSEDQMRLLKR 117 >gi|326938868|gb|AEA14764.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar chinensis CT-43] Length = 1241 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|118476726|ref|YP_893877.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bacillus thuringiensis str. Al Hakam] gi|225863093|ref|YP_002748471.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB102] gi|251764499|sp|A0RAX7|ADDA_BACAH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|118415951|gb|ABK84370.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bacillus thuringiensis str. Al Hakam] gi|225787430|gb|ACO27647.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB102] Length = 1241 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|30019293|ref|NP_830924.1| ATP-dependent nuclease subunit A [Bacillus cereus ATCC 14579] gi|296501840|ref|YP_003663540.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis BMB171] gi|81580749|sp|Q81GP9|ADDA_BACCR RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|29894836|gb|AAP08125.1| ATP-dependent nuclease subunit A [Bacillus cereus ATCC 14579] gi|296322892|gb|ADH05820.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis BMB171] Length = 1241 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|30261249|ref|NP_843626.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Ames] gi|47526411|ref|YP_017760.1| ATP-dependent nuclease subunit A [Bacillus anthracis str. 'Ames Ancestor'] gi|49184081|ref|YP_027333.1| ATP-dependent nuclease subunit A [Bacillus anthracis str. Sterne] gi|65318520|ref|ZP_00391479.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Bacillus anthracis str. A2012] gi|165873114|ref|ZP_02217732.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0488] gi|167640214|ref|ZP_02398480.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0193] gi|170688037|ref|ZP_02879249.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0465] gi|177655492|ref|ZP_02936935.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0174] gi|190566724|ref|ZP_03019641.1| ATP-dependent nuclease, subunit A [Bacillus anthracis Tsiankovskii-I] gi|227816013|ref|YP_002816022.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. CDC 684] gi|229601554|ref|YP_002865672.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0248] gi|254682690|ref|ZP_05146551.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. CNEVA-9066] gi|254734108|ref|ZP_05191821.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Western North America USA6153] gi|254753588|ref|ZP_05205624.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Vollum] gi|254758685|ref|ZP_05210712.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Australia 94] gi|81583096|sp|Q81TW1|ADDA_BACAN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|30254863|gb|AAP25112.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Ames] gi|47501559|gb|AAT30235.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. 'Ames Ancestor'] gi|49178008|gb|AAT53384.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Sterne] gi|164711168|gb|EDR16727.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0488] gi|167511815|gb|EDR87195.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0193] gi|170667932|gb|EDT18683.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0465] gi|172080091|gb|EDT65187.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0174] gi|190562276|gb|EDV16244.1| ATP-dependent nuclease, subunit A [Bacillus anthracis Tsiankovskii-I] gi|227003890|gb|ACP13633.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. CDC 684] gi|229265962|gb|ACQ47599.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0248] Length = 1241 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|325663487|ref|ZP_08151897.1| hypothetical protein HMPREF0490_02638 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470386|gb|EGC73617.1| hypothetical protein HMPREF0490_02638 [Lachnospiraceae bacterium 4_1_37FAA] Length = 195 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 25/164 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 +S TK + + R+ VSA AGSGKT +LV+R++ L + P +L +T T+A Sbjct: 3 VSWTKEQAQVIHLRNRNILVSAAAGSGKTAVLVERIITRLTVDEPPIDVDQMLVVTFTEA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ + I K ++P + + L+ +V Sbjct: 63 AAAEMKERIRD---------------AIEKKLEEQPENVHLQRQATLI-------HNAQV 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 TIH+FC ++++ + ++ F IADE + K L ++ + L Sbjct: 101 TTIHSFCLSVIRDYFHMIDLDPGFRIADEGELKLLRQDVLEEVL 144 >gi|254725483|ref|ZP_05187265.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A1055] Length = 1241 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|228913817|ref|ZP_04077442.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845756|gb|EEM90782.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 1240 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 26 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 81 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 82 -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 123 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 124 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 180 Query: 205 ETLI 208 + +I Sbjct: 181 QRMI 184 >gi|170707635|ref|ZP_02898087.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0389] gi|170127410|gb|EDS96285.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0389] Length = 1241 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|196037643|ref|ZP_03104954.1| ATP-dependent nuclease, subunit A [Bacillus cereus NVH0597-99] gi|196031885|gb|EDX70481.1| ATP-dependent nuclease, subunit A [Bacillus cereus NVH0597-99] Length = 1241 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|218233217|ref|YP_002365926.1| ATP-dependent nuclease, subunit A [Bacillus cereus B4264] gi|251764502|sp|B7HGP9|ADDA_BACC4 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|218161174|gb|ACK61166.1| ATP-dependent nuclease, subunit A [Bacillus cereus B4264] Length = 1241 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|206967662|ref|ZP_03228618.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH1134] gi|206736582|gb|EDZ53729.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH1134] Length = 1241 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|167635407|ref|ZP_02393721.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0442] gi|254740248|ref|ZP_05197940.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Kruger B] gi|167529235|gb|EDR91988.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0442] Length = 1241 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|294794377|ref|ZP_06759513.1| ATP-dependent nuclease subunit A [Veillonella sp. 3_1_44] gi|294454707|gb|EFG23080.1| ATP-dependent nuclease subunit A [Veillonella sp. 3_1_44] Length = 1251 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 29/183 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV-LEIITAWSH 91 V+A AGSGKT +LV+R++ L +P L+ +T TKAAA EMS R+ L + A Sbjct: 28 VAAAAGSGKTAVLVERIITRLKDMDNPLSVQELMVVTFTKAAAQEMSARIGLALAKAMES 87 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 D L A + + P+ + T+H+FC+ +++ + + Sbjct: 88 TDDAALQARLERQLNLLPSA--------------------HISTLHSFCQWVIRSYFYKL 127 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISD 210 +I I +E + L +E LA ++ + EE YE+ + S+D+ L + Sbjct: 128 DINPTARIGNEAEMALLQQE----VLADLLTKSYEEGLYNIYELADFFSDDKSDAGLTAK 183 Query: 211 IIS 213 I+S Sbjct: 184 IMS 186 >gi|197302903|ref|ZP_03167954.1| hypothetical protein RUMLAC_01631 [Ruminococcus lactaris ATCC 29176] gi|197297984|gb|EDY32533.1| hypothetical protein RUMLAC_01631 [Ruminococcus lactaris ATCC 29176] Length = 1256 Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 48/195 (24%), Positives = 88/195 (45%), Gaps = 25/195 (12%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + TK ++ + R+ VSA AGSGKT +LV+R++ + +P LL +T+T+A Sbjct: 3 VKWTKEQRQVIDLRDRNILVSAAAGSGKTAVLVERIISRITDEKNPVDVDKLLVVTYTEA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ +A I K + P ++ + L+ + + + Sbjct: 63 AAAEMKERI---------------AAAIEKKLEEFPGNLNLEQQASLIHSAM-------I 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T+H FC ++++ I F + +E + + L ++ L + EE ++ Sbjct: 101 TTVHKFCLSVIRDHFHVIGIDPSFRVGEEGELRLLKQDVLDEMLEEHYAKDEEEFREFVE 160 Query: 194 EILEISNDEDIETLI 208 + D+ IE LI Sbjct: 161 KYGTGRTDKKIEELI 175 >gi|183221122|ref|YP_001839118.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911213|ref|YP_001962768.1| ATP-dependent DNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775889|gb|ABZ94190.1| ATP-dependent DNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779544|gb|ABZ97842.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 664 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 38/150 (25%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 P V A AG+GKT LV R+ L+ +P ++L LT T+ AA EM R +I+ Sbjct: 16 PKGPILVVAGAGTGKTKTLVHRLAHLVKNGTNPESILLLTFTRRAAKEMLGRASQILD-- 73 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 H ++++ GG T H+FC ++++ Sbjct: 74 -----------------------------HRMMSVR---GG----TFHSFCHLFLRKYAN 97 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLAS 179 ++ SHF I DEE + + A+ + + Sbjct: 98 ALSLDSHFTILDEEDTIGFVGMARDQVVTT 127 >gi|291277552|ref|YP_003517324.1| putative DNA helicase [Helicobacter mustelae 12198] gi|290964746|emb|CBG40601.1| putative DNA helicase [Helicobacter mustelae 12198] Length = 898 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 5/129 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD-EI 96 A+AGSGKT L R L LL A A+ +L LT TK AA EM R+ + + + + + + Sbjct: 10 ASAGSGKTFALTLRYLSLLFAGANAGEILALTFTKKAAGEMRERISDALEELASVGESKY 69 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 L IT K + + A+ + L + +K+ T+ +F +++++F ++ + Sbjct: 70 LQNLITDYGFSK--EEILGNAKRVFGHFLAS--NIKITTLDSFFNSVVRKFCWNVGLSKN 125 Query: 157 FAIADEEQS 165 F I +E+S Sbjct: 126 FTIKAQEES 134 >gi|218701273|ref|YP_002408902.1| DNA-dependent helicase II [Escherichia coli IAI39] gi|218371259|emb|CAR19093.1| DNA-dependent ATPase I and helicase II [Escherichia coli IAI39] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|331685533|ref|ZP_08386117.1| DNA helicase II [Escherichia coli H299] gi|331077234|gb|EGI48448.1| DNA helicase II [Escherichia coli H299] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|157158058|ref|YP_001465297.1| DNA-dependent helicase II [Escherichia coli E24377A] gi|157080088|gb|ABV19796.1| DNA helicase II [Escherichia coli E24377A] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|293417279|ref|ZP_06659904.1| DNA helicase II [Escherichia coli B185] gi|291431047|gb|EFF04042.1| DNA helicase II [Escherichia coli B185] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|271502378|ref|YP_003335404.1| DNA helicase II [Dickeya dadantii Ech586] gi|270345933|gb|ACZ78698.1| DNA helicase II [Dickeya dadantii Ech586] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D ++ + + + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SDLLDSLNDKQRDAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLTVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ D++L + G Sbjct: 62 FTNKAAAEMRHRI-----------DQLLGT---------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H +++ L+A + F I D E +L++ K+ Sbjct: 84 GMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLKRLIKA 129 >gi|218707447|ref|YP_002414966.1| DNA-dependent helicase II [Escherichia coli UMN026] gi|331665463|ref|ZP_08366362.1| DNA helicase II [Escherichia coli TA143] gi|218434544|emb|CAR15471.1| DNA-dependent ATPase I and helicase II [Escherichia coli UMN026] gi|331057361|gb|EGI29350.1| DNA helicase II [Escherichia coli TA143] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|196036255|ref|ZP_03103654.1| ATP-dependent nuclease, subunit A [Bacillus cereus W] gi|195991230|gb|EDX55199.1| ATP-dependent nuclease, subunit A [Bacillus cereus W] Length = 1241 Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDEPGSQHIRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNMIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|191166051|ref|ZP_03027886.1| DNA helicase II [Escherichia coli B7A] gi|190903827|gb|EDV63541.1| DNA helicase II [Escherichia coli B7A] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|209921291|ref|YP_002295375.1| DNA-dependent helicase II [Escherichia coli SE11] gi|209914550|dbj|BAG79624.1| DNA helicase II [Escherichia coli SE11] gi|324016210|gb|EGB85429.1| DNA helicase II [Escherichia coli MS 117-3] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|168763938|ref|ZP_02788945.1| DNA helicase II [Escherichia coli O157:H7 str. EC4501] gi|217325077|ref|ZP_03441161.1| DNA helicase II [Escherichia coli O157:H7 str. TW14588] gi|189365967|gb|EDU84383.1| DNA helicase II [Escherichia coli O157:H7 str. EC4501] gi|217321298|gb|EEC29722.1| DNA helicase II [Escherichia coli O157:H7 str. TW14588] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|126030797|pdb|2IS1|A Chain A, Crystal Structure Of Uvrd-Dna-So4 Complex gi|126030798|pdb|2IS1|B Chain B, Crystal Structure Of Uvrd-Dna-So4 Complex gi|126030803|pdb|2IS2|A Chain A, Crystal Structure Of Uvrd-Dna Binary Complex gi|126030804|pdb|2IS2|B Chain B, Crystal Structure Of Uvrd-Dna Binary Complex gi|126030807|pdb|2IS4|A Chain A, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex gi|126030808|pdb|2IS4|B Chain B, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex gi|126030811|pdb|2IS6|A Chain A, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex gi|126030812|pdb|2IS6|B Chain B, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex Length = 680 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|323483647|ref|ZP_08089031.1| hypothetical protein HMPREF9474_00780 [Clostridium symbiosum WAL-14163] gi|323403074|gb|EGA95388.1| hypothetical protein HMPREF9474_00780 [Clostridium symbiosum WAL-14163] Length = 109 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 10/112 (8%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAA 74 ++ TK ++ + R+ VSA AGSGKT +LV+R++R++ ++ LL +T TKAA Sbjct: 3 VNWTKEQKAVIESRNRNLLVSAAAGSGKTAVLVERIIRMITGDSPIDIDRLLVMTFTKAA 62 Query: 75 AAEMSHRVLEIITA-WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 AAEM R+ I W + I +P++ + + R L +++ Sbjct: 63 AAEMRERIQAAIEKNWKKIPG-------MSICSSRPSRYSLPRLRRLTVSVF 107 >gi|309796243|ref|ZP_07690653.1| DNA helicase II [Escherichia coli MS 145-7] gi|308120125|gb|EFO57387.1| DNA helicase II [Escherichia coli MS 145-7] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|43297|emb|CAA25321.1| pot. DNA helicase II [Escherichia coli] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|298383180|ref|ZP_06992774.1| DNA helicase II [Escherichia coli FVEC1302] gi|298276416|gb|EFI17935.1| DNA helicase II [Escherichia coli FVEC1302] Length = 722 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 6 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 63 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 64 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 85 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 86 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 126 >gi|253584027|ref|ZP_04861225.1| ATP-dependent nuclease subunit A [Fusobacterium varium ATCC 27725] gi|251834599|gb|EES63162.1| ATP-dependent nuclease subunit A [Fusobacterium varium ATCC 27725] Length = 1036 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 17/187 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AG+GKT+ L + L +L +T TK A AE+ R+L+ + L++ Sbjct: 20 LKASAGTGKTYRLSLEYVGALCRGTDFKDILVMTFTKKATAEIKERILKFL---KELAEN 76 Query: 96 ILSAEITKIQGKK--PN-KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-FPLEA 151 E K KK P+ + + K + +++ LKV TI AF I ++ Sbjct: 77 AKDGESIKENLKKIYPDMEFNQQKISAVYQDLIQNRDKLKVYTIDAFTNLIFKKAIAPYL 136 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE---TLI 208 I S+ I D+E K LI+ +K + DN E+ +AF LE ++++D+E TLI Sbjct: 137 KIYSYEIIDDDENRKILIKTFQK------IFDNKEDF-RAFKGFLEDNSEKDMENYLTLI 189 Query: 209 SDIISNR 215 +I++ R Sbjct: 190 KNILNER 196 >gi|222150842|ref|YP_002559995.1| hypothetical protein MCCL_0592 [Macrococcus caseolyticus JCSC5402] gi|222119964|dbj|BAH17299.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 1148 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 29/165 (17%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78 T S+Q + V+A AGSGKT +LV+R++R ++ + + LL +T T A+A EM Sbjct: 4 TASQQEAIVTTGQDTLVAAAAGSGKTAVLVERIIRKIIDQSVNVDELLVVTFTNASAKEM 63 Query: 79 SHRVLEIITAWSHLSDEILSA---EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 HR+ ++ L + + A E K Q K +++D+S T Sbjct: 64 KHRI------FNRLQEALNDAPHNEHLKTQLIKLHQADIS-------------------T 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 +H FC ++++F ++ F A EE+ L+ +A L +I Sbjct: 99 LHRFCLNLIERFYYTIDLDPTFRTASEEERALLLMQAIDDVLETI 143 >gi|331655498|ref|ZP_08356491.1| DNA helicase II [Escherichia coli M718] gi|331046819|gb|EGI18903.1| DNA helicase II [Escherichia coli M718] Length = 722 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 6 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 63 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 64 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 85 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 86 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 126 >gi|331644546|ref|ZP_08345666.1| DNA helicase II [Escherichia coli H736] gi|331679923|ref|ZP_08380586.1| DNA helicase II [Escherichia coli H591] gi|331036218|gb|EGI08453.1| DNA helicase II [Escherichia coli H736] gi|331072470|gb|EGI43802.1| DNA helicase II [Escherichia coli H591] gi|332105031|gb|EGJ08377.1| DNA helicase II [Shigella sp. D9] Length = 722 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 6 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 63 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 64 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 85 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 86 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 126 >gi|317497577|ref|ZP_07955895.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895136|gb|EFV17300.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA] Length = 727 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 25/146 (17%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 TK +Q + VSA AGSGKT +LV+R+++ + HP LL +T TKAAA Sbjct: 4 TKQQQKVIDQRDADILVSAAAGSGKTAVLVERIIQKITDEKHPIDVDHLLVVTFTKAAAG 63 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R++ L ++ + G + +S IT TI Sbjct: 64 EMKERIM-----------AALDEKVREFPGNQHFVKQLSLIHKAQIT-----------TI 101 Query: 137 HAFCEAIMQQFPLEANITSHFAIADE 162 H+FC +++ + I + A DE Sbjct: 102 HSFCMNLIRDYFYVLGIDPNTAPGDE 127 >gi|242237694|ref|YP_002985875.1| DNA-dependent helicase II [Dickeya dadantii Ech703] gi|242129751|gb|ACS84053.1| DNA helicase II [Dickeya dadantii Ech703] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D ++ + + + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SDLLDSLNDKQRDAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLTVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ ++I + G Sbjct: 62 FTNKAAAEMRHRIDQLIGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H +++ L+A + F I D E +L++ K+ Sbjct: 84 GMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLKRLIKA 129 >gi|187733738|ref|YP_001882507.1| DNA-dependent helicase II [Shigella boydii CDC 3083-94] gi|187430730|gb|ACD10004.1| DNA helicase II [Shigella boydii CDC 3083-94] gi|320176055|gb|EFW51124.1| ATP-dependent DNA helicase UvrD/PcrA [Shigella dysenteriae CDC 74-1112] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|323964058|gb|EGB59548.1| DNA helicase II [Escherichia coli M863] gi|327250663|gb|EGE62369.1| DNA helicase II [Escherichia coli STEC_7v] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|300921476|ref|ZP_07137824.1| DNA helicase II [Escherichia coli MS 115-1] gi|300411593|gb|EFJ94903.1| DNA helicase II [Escherichia coli MS 115-1] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|300904068|ref|ZP_07121948.1| DNA helicase II [Escherichia coli MS 84-1] gi|301303709|ref|ZP_07209830.1| DNA helicase II [Escherichia coli MS 124-1] gi|300403948|gb|EFJ87486.1| DNA helicase II [Escherichia coli MS 84-1] gi|300841009|gb|EFK68769.1| DNA helicase II [Escherichia coli MS 124-1] gi|315254178|gb|EFU34146.1| DNA helicase II [Escherichia coli MS 85-1] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|30064891|ref|NP_839062.1| DNA-dependent helicase II [Shigella flexneri 2a str. 2457T] gi|56480441|ref|NP_709620.2| DNA-dependent helicase II [Shigella flexneri 2a str. 301] gi|110807496|ref|YP_691016.1| DNA-dependent helicase II [Shigella flexneri 5 str. 8401] gi|30043151|gb|AAP18873.1| DNA-dependent ATPase I and helicase II [Shigella flexneri 2a str. 2457T] gi|56383992|gb|AAN45327.2| DNA-dependent ATPase I and helicase II [Shigella flexneri 2a str. 301] gi|110617044|gb|ABF05711.1| DNA-dependent ATPase I and helicase II [Shigella flexneri 5 str. 8401] gi|281603206|gb|ADA76190.1| DNA-dependent ATPase I and helicase II [Shigella flexneri 2002017] gi|313647145|gb|EFS11600.1| DNA helicase II [Shigella flexneri 2a str. 2457T] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|222035511|emb|CAP78256.1| DNA helicase II [Escherichia coli LF82] gi|312948366|gb|ADR29193.1| DNA-dependent helicase II [Escherichia coli O83:H1 str. NRG 857C] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|163939035|ref|YP_001643919.1| recombination helicase AddA [Bacillus weihenstephanensis KBAB4] gi|251764507|sp|A9VJ02|ADDA_BACWK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|163861232|gb|ABY42291.1| Recombination helicase AddA [Bacillus weihenstephanensis KBAB4] Length = 1241 Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIIREENPVDVDRLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDGPGSQHIRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNSIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|216673|dbj|BAA00048.1| uvrD [Escherichia coli] gi|355936|prf||1207236A helicase II Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T T Sbjct: 7 LDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM HR+ +++ + GG+ Sbjct: 65 KAAAEMRHRIGQLMGT--------------------------------------SQGGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 V T H +++ ++AN+ F I D E +L++ Sbjct: 87 VGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|293407440|ref|ZP_06651360.1| DNA helicase II [Escherichia coli FVEC1412] gi|291425551|gb|EFE98589.1| DNA helicase II [Escherichia coli FVEC1412] Length = 722 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 6 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 63 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 64 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 85 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 86 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 126 >gi|16131665|ref|NP_418258.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12 substr. MG1655] gi|89110206|ref|AP_003986.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12 substr. W3110] gi|170083295|ref|YP_001732615.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12 substr. DH10B] gi|193065672|ref|ZP_03046737.1| DNA helicase II [Escherichia coli E22] gi|194429230|ref|ZP_03061758.1| DNA helicase II [Escherichia coli B171] gi|194434041|ref|ZP_03066311.1| DNA helicase II [Shigella dysenteriae 1012] gi|218697531|ref|YP_002405198.1| DNA-dependent helicase II [Escherichia coli 55989] gi|238902889|ref|YP_002928685.1| DNA-dependent ATPase I and helicase II [Escherichia coli BW2952] gi|256021443|ref|ZP_05435308.1| DNA-dependent helicase II [Shigella sp. D9] gi|256026160|ref|ZP_05440025.1| DNA-dependent helicase II [Escherichia sp. 4_1_40B] gi|260846411|ref|YP_003224189.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli O103:H2 str. 12009] gi|293468131|ref|ZP_06664543.1| DNA helicase II [Escherichia coli B088] gi|300818716|ref|ZP_07098923.1| DNA helicase II [Escherichia coli MS 107-1] gi|300823349|ref|ZP_07103480.1| DNA helicase II [Escherichia coli MS 119-7] gi|300923317|ref|ZP_07139365.1| DNA helicase II [Escherichia coli MS 182-1] gi|300955181|ref|ZP_07167578.1| DNA helicase II [Escherichia coli MS 175-1] gi|301646119|ref|ZP_07246019.1| DNA helicase II [Escherichia coli MS 146-1] gi|307140512|ref|ZP_07499868.1| DNA-dependent helicase II [Escherichia coli H736] gi|307313613|ref|ZP_07593233.1| DNA helicase II [Escherichia coli W] gi|312971900|ref|ZP_07786074.1| DNA helicase II [Escherichia coli 1827-70] gi|331670659|ref|ZP_08371496.1| DNA helicase II [Escherichia coli TA271] gi|137194|sp|P03018|UVRD_ECOLI RecName: Full=DNA helicase II gi|43299|emb|CAA27671.1| unnamed protein product [Escherichia coli] gi|2367296|gb|AAC76816.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12 substr. MG1655] gi|85676237|dbj|BAE77487.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K12 substr. W3110] gi|169891130|gb|ACB04837.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12 substr. DH10B] gi|192926639|gb|EDV81268.1| DNA helicase II [Escherichia coli E22] gi|194412742|gb|EDX29036.1| DNA helicase II [Escherichia coli B171] gi|194417699|gb|EDX33798.1| DNA helicase II [Shigella dysenteriae 1012] gi|218354263|emb|CAV00941.1| DNA-dependent ATPase I and helicase II [Escherichia coli 55989] gi|238860998|gb|ACR62996.1| DNA-dependent ATPase I and helicase II [Escherichia coli BW2952] gi|257761558|dbj|BAI33055.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli O103:H2 str. 12009] gi|260451344|gb|ACX41766.1| DNA helicase II [Escherichia coli DH1] gi|291321509|gb|EFE60947.1| DNA helicase II [Escherichia coli B088] gi|300317898|gb|EFJ67682.1| DNA helicase II [Escherichia coli MS 175-1] gi|300420403|gb|EFK03714.1| DNA helicase II [Escherichia coli MS 182-1] gi|300524135|gb|EFK45204.1| DNA helicase II [Escherichia coli MS 119-7] gi|300528682|gb|EFK49744.1| DNA helicase II [Escherichia coli MS 107-1] gi|301075645|gb|EFK90451.1| DNA helicase II [Escherichia coli MS 146-1] gi|306906594|gb|EFN37106.1| DNA helicase II [Escherichia coli W] gi|309704248|emb|CBJ03596.1| DNA helicase II [Escherichia coli ETEC H10407] gi|310334277|gb|EFQ00482.1| DNA helicase II [Escherichia coli 1827-70] gi|315063105|gb|ADT77432.1| DNA-dependent ATPase I and helicase II [Escherichia coli W] gi|315138390|dbj|BAJ45549.1| DNA-dependent helicase II [Escherichia coli DH1] gi|315618489|gb|EFU99075.1| DNA helicase II [Escherichia coli 3431] gi|320198480|gb|EFW73081.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli EC4100B] gi|323161123|gb|EFZ47041.1| DNA helicase II [Escherichia coli E128010] gi|323182585|gb|EFZ67989.1| DNA helicase II [Escherichia coli 1357] gi|323380831|gb|ADX53099.1| DNA helicase II [Escherichia coli KO11] gi|323934201|gb|EGB30632.1| DNA helicase II [Escherichia coli E1520] gi|323938949|gb|EGB35168.1| DNA helicase II [Escherichia coli E482] gi|324115724|gb|EGC09659.1| DNA helicase II [Escherichia coli E1167] gi|331062132|gb|EGI34054.1| DNA helicase II [Escherichia coli TA271] gi|332084961|gb|EGI90143.1| DNA helicase II [Shigella dysenteriae 155-74] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|15804402|ref|NP_290442.1| DNA-dependent helicase II [Escherichia coli O157:H7 EDL933] gi|15833997|ref|NP_312770.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. Sakai] gi|74314325|ref|YP_312744.1| DNA-dependent helicase II [Shigella sonnei Ss046] gi|110644138|ref|YP_671868.1| DNA-dependent helicase II [Escherichia coli 536] gi|117626072|ref|YP_859395.1| DNA-dependent helicase II [Escherichia coli APEC O1] gi|161486051|ref|NP_756593.2| DNA-dependent helicase II [Escherichia coli CFT073] gi|162138327|ref|YP_543324.2| DNA-dependent helicase II [Escherichia coli UTI89] gi|168750375|ref|ZP_02775397.1| DNA helicase II [Escherichia coli O157:H7 str. EC4113] gi|168753710|ref|ZP_02778717.1| DNA helicase II [Escherichia coli O157:H7 str. EC4401] gi|168768094|ref|ZP_02793101.1| DNA helicase II [Escherichia coli O157:H7 str. EC4486] gi|168775636|ref|ZP_02800643.1| DNA helicase II [Escherichia coli O157:H7 str. EC4196] gi|168780712|ref|ZP_02805719.1| DNA helicase II [Escherichia coli O157:H7 str. EC4076] gi|168786651|ref|ZP_02811658.1| DNA helicase II [Escherichia coli O157:H7 str. EC869] gi|168801123|ref|ZP_02826130.1| DNA helicase II [Escherichia coli O157:H7 str. EC508] gi|170679582|ref|YP_001746130.1| DNA-dependent helicase II [Escherichia coli SMS-3-5] gi|191174264|ref|ZP_03035773.1| DNA helicase II [Escherichia coli F11] gi|194438675|ref|ZP_03070763.1| DNA helicase II [Escherichia coli 101-1] gi|195938102|ref|ZP_03083484.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. EC4024] gi|208807358|ref|ZP_03249695.1| DNA helicase II [Escherichia coli O157:H7 str. EC4206] gi|208813979|ref|ZP_03255308.1| DNA helicase II [Escherichia coli O157:H7 str. EC4045] gi|208819804|ref|ZP_03260124.1| DNA helicase II [Escherichia coli O157:H7 str. EC4042] gi|209396002|ref|YP_002273330.1| DNA helicase II [Escherichia coli O157:H7 str. EC4115] gi|215489141|ref|YP_002331572.1| DNA-dependent helicase II [Escherichia coli O127:H6 str. E2348/69] gi|218550963|ref|YP_002384754.1| DNA-dependent helicase II [Escherichia fergusonii ATCC 35469] gi|227888602|ref|ZP_04006407.1| excision endonuclease subunit UvrD [Escherichia coli 83972] gi|253775563|ref|YP_003038394.1| DNA-dependent helicase II [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163755|ref|YP_003046863.1| DNA-dependent helicase II [Escherichia coli B str. REL606] gi|254795809|ref|YP_003080646.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. TW14359] gi|261225587|ref|ZP_05939868.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7 str. FRIK2000] gi|261255633|ref|ZP_05948166.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7 str. FRIK966] gi|291285227|ref|YP_003502045.1| DNA helicase II [Escherichia coli O55:H7 str. CB9615] gi|293413255|ref|ZP_06655917.1| DNA helicase II [Escherichia coli B354] gi|301025742|ref|ZP_07189257.1| DNA helicase II [Escherichia coli MS 69-1] gi|301047305|ref|ZP_07194391.1| DNA helicase II [Escherichia coli MS 185-1] gi|306815148|ref|ZP_07449301.1| DNA-dependent helicase II [Escherichia coli NC101] gi|312969459|ref|ZP_07783661.1| DNA helicase II [Escherichia coli 2362-75] gi|331660158|ref|ZP_08361094.1| DNA helicase II [Escherichia coli TA206] gi|12518681|gb|AAG59006.1|AE005612_9 DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7 str. EDL933] gi|13364219|dbj|BAB38166.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7 str. Sakai] gi|73857802|gb|AAZ90509.1| DNA-dependent ATPase I and helicase II [Shigella sonnei Ss046] gi|110345730|gb|ABG71967.1| DNA helicase II [Escherichia coli 536] gi|115515196|gb|ABJ03271.1| DNA-dependent ATPase I and helicase II [Escherichia coli APEC O1] gi|170517300|gb|ACB15478.1| DNA helicase II [Escherichia coli SMS-3-5] gi|187768818|gb|EDU32662.1| DNA helicase II [Escherichia coli O157:H7 str. EC4196] gi|188015427|gb|EDU53549.1| DNA helicase II [Escherichia coli O157:H7 str. EC4113] gi|189001426|gb|EDU70412.1| DNA helicase II [Escherichia coli O157:H7 str. EC4076] gi|189359023|gb|EDU77442.1| DNA helicase II [Escherichia coli O157:H7 str. EC4401] gi|189362636|gb|EDU81055.1| DNA helicase II [Escherichia coli O157:H7 str. EC4486] gi|189373276|gb|EDU91692.1| DNA helicase II [Escherichia coli O157:H7 str. EC869] gi|189376660|gb|EDU95076.1| DNA helicase II [Escherichia coli O157:H7 str. EC508] gi|190905447|gb|EDV65077.1| DNA helicase II [Escherichia coli F11] gi|194422479|gb|EDX38478.1| DNA helicase II [Escherichia coli 101-1] gi|208727159|gb|EDZ76760.1| DNA helicase II [Escherichia coli O157:H7 str. EC4206] gi|208735256|gb|EDZ83943.1| DNA helicase II [Escherichia coli O157:H7 str. EC4045] gi|208739927|gb|EDZ87609.1| DNA helicase II [Escherichia coli O157:H7 str. EC4042] gi|209157402|gb|ACI34835.1| DNA helicase II [Escherichia coli O157:H7 str. EC4115] gi|209753228|gb|ACI74921.1| hypothetical protein ECs4743 [Escherichia coli] gi|209753230|gb|ACI74922.1| hypothetical protein ECs4743 [Escherichia coli] gi|209753232|gb|ACI74923.1| hypothetical protein ECs4743 [Escherichia coli] gi|209753234|gb|ACI74924.1| hypothetical protein ECs4743 [Escherichia coli] gi|209753236|gb|ACI74925.1| hypothetical protein ECs4743 [Escherichia coli] gi|215267213|emb|CAS11661.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli O127:H6 str. E2348/69] gi|218358504|emb|CAQ91151.1| DNA-dependent ATPase I and helicase II [Escherichia fergusonii ATCC 35469] gi|227834441|gb|EEJ44907.1| excision endonuclease subunit UvrD [Escherichia coli 83972] gi|242379343|emb|CAQ34155.1| DNA-dependent ATPase I and helicase II, subunit of UvrABC Nucleotide Excision Repair Complex [Escherichia coli BL21(DE3)] gi|253326607|gb|ACT31209.1| DNA helicase II [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975656|gb|ACT41327.1| DNA-dependent ATPase I and helicase II [Escherichia coli B str. REL606] gi|253979812|gb|ACT45482.1| DNA-dependent ATPase I and helicase II [Escherichia coli BL21(DE3)] gi|254595209|gb|ACT74570.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7 str. TW14359] gi|281180862|dbj|BAI57192.1| DNA helicase II [Escherichia coli SE15] gi|284923921|emb|CBG37020.1| DNA helicase II [Escherichia coli 042] gi|290765100|gb|ADD59061.1| DNA helicase II [Escherichia coli O55:H7 str. CB9615] gi|291468203|gb|EFF10700.1| DNA helicase II [Escherichia coli B354] gi|294492576|gb|ADE91332.1| DNA helicase II [Escherichia coli IHE3034] gi|300300824|gb|EFJ57209.1| DNA helicase II [Escherichia coli MS 185-1] gi|300395865|gb|EFJ79403.1| DNA helicase II [Escherichia coli MS 69-1] gi|305851517|gb|EFM51971.1| DNA-dependent helicase II [Escherichia coli NC101] gi|307555939|gb|ADN48714.1| DNA helicase II [Escherichia coli ABU 83972] gi|307628876|gb|ADN73180.1| DNA-dependent helicase II [Escherichia coli UM146] gi|312286006|gb|EFR13924.1| DNA helicase II [Escherichia coli 2362-75] gi|315296794|gb|EFU56086.1| DNA helicase II [Escherichia coli MS 16-3] gi|320197622|gb|EFW72234.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli WV_060327] gi|320639296|gb|EFX08918.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. G5101] gi|320644681|gb|EFX13731.1| DNA-dependent helicase II [Escherichia coli O157:H- str. 493-89] gi|320650006|gb|EFX18509.1| DNA-dependent helicase II [Escherichia coli O157:H- str. H 2687] gi|320655352|gb|EFX23294.1| DNA-dependent helicase II [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660978|gb|EFX28421.1| DNA-dependent helicase II [Escherichia coli O55:H7 str. USDA 5905] gi|320666102|gb|EFX33116.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. LSU-61] gi|323167561|gb|EFZ53267.1| DNA helicase II [Shigella sonnei 53G] gi|323189761|gb|EFZ75040.1| DNA helicase II [Escherichia coli RN587/1] gi|323949303|gb|EGB45193.1| DNA helicase II [Escherichia coli H252] gi|323954020|gb|EGB49818.1| DNA helicase II [Escherichia coli H263] gi|323959068|gb|EGB54737.1| DNA helicase II [Escherichia coli H489] gi|323969346|gb|EGB64645.1| DNA helicase II [Escherichia coli TA007] gi|323974395|gb|EGB69523.1| DNA helicase II [Escherichia coli TW10509] gi|324111038|gb|EGC05025.1| DNA helicase II [Escherichia fergusonii B253] gi|326344269|gb|EGD68029.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli O157:H7 str. 1125] gi|326347903|gb|EGD71617.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli O157:H7 str. 1044] gi|330908113|gb|EGH36632.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli AA86] gi|331052726|gb|EGI24761.1| DNA helicase II [Escherichia coli TA206] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|157163290|ref|YP_001460608.1| DNA-dependent helicase II [Escherichia coli HS] gi|170022164|ref|YP_001727118.1| DNA-dependent helicase II [Escherichia coli ATCC 8739] gi|188494883|ref|ZP_03002153.1| DNA helicase II [Escherichia coli 53638] gi|193067953|ref|ZP_03048918.1| DNA helicase II [Escherichia coli E110019] gi|218556376|ref|YP_002389290.1| DNA-dependent helicase II [Escherichia coli IAI1] gi|260857781|ref|YP_003231672.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli O26:H11 str. 11368] gi|260870538|ref|YP_003236940.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli O111:H- str. 11128] gi|157068970|gb|ABV08225.1| DNA helicase II [Escherichia coli HS] gi|169757092|gb|ACA79791.1| DNA helicase II [Escherichia coli ATCC 8739] gi|188490082|gb|EDU65185.1| DNA helicase II [Escherichia coli 53638] gi|192958573|gb|EDV89011.1| DNA helicase II [Escherichia coli E110019] gi|218363145|emb|CAR00786.1| DNA-dependent ATPase I and helicase II [Escherichia coli IAI1] gi|257756430|dbj|BAI27932.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli O26:H11 str. 11368] gi|257766894|dbj|BAI38389.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli O111:H- str. 11128] gi|323155219|gb|EFZ41403.1| DNA helicase II [Escherichia coli EPECa14] gi|323173428|gb|EFZ59057.1| DNA helicase II [Escherichia coli LT-68] gi|323177826|gb|EFZ63410.1| DNA helicase II [Escherichia coli 1180] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|331649638|ref|ZP_08350720.1| DNA helicase II [Escherichia coli M605] gi|331675280|ref|ZP_08376031.1| DNA helicase II [Escherichia coli TA280] gi|331041508|gb|EGI13656.1| DNA helicase II [Escherichia coli M605] gi|331067566|gb|EGI38970.1| DNA helicase II [Escherichia coli TA280] Length = 722 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 6 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 63 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 64 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 85 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 86 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 126 >gi|238018401|ref|ZP_04598827.1| hypothetical protein VEIDISOL_00227 [Veillonella dispar ATCC 17748] gi|237864872|gb|EEP66162.1| hypothetical protein VEIDISOL_00227 [Veillonella dispar ATCC 17748] Length = 1266 Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 29/183 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV-LEIITAWSH 91 V+A AGSGKT +LV+R++ L +P L+ +T TKAAA EMS R+ L + A Sbjct: 28 VAAAAGSGKTAVLVERIITRLKDMDNPLSVQELMVVTFTKAAAQEMSARIGLALAKAMES 87 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 DE + + + P+ + T+H+FC+ +++ + + Sbjct: 88 TDDEAMQQRLERQLNLLPSA--------------------HISTLHSFCQWVIRSYFYKL 127 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISD 210 +I I +E + L +E LA ++ + EE YE+ + S+D+ L + Sbjct: 128 DINPTARIGNEAEMALLQQE----VLADLLTKSYEEGLYNIYELADFFSDDKSDAGLTAK 183 Query: 211 IIS 213 I+S Sbjct: 184 IMS 186 >gi|196044179|ref|ZP_03111415.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB108] gi|196024818|gb|EDX63489.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB108] Length = 1241 Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 32/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA EM +R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDHLLVVTFTNAAAQEMKNRIGE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + K+ +P + K LL + TIH+FC +++ + Sbjct: 83 -----------ALEKVLIDEPGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYY 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDI 204 ++ F IA++ +++ L EE L + E F+E+++ +D+D+ Sbjct: 125 YMLDVDPRFRIANQTENELLKEEVLDDILEE---EYGIEDNTIFFELVDRYTSDRSDDDL 181 Query: 205 ETLI 208 + +I Sbjct: 182 QRMI 185 >gi|209523272|ref|ZP_03271828.1| UvrD/REP helicase [Arthrospira maxima CS-328] gi|209496423|gb|EDZ96722.1| UvrD/REP helicase [Arthrospira maxima CS-328] Length = 1070 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 30/165 (18%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAA 75 +S T +Q A+ P +S V+A AG+GKT++LV+R L L+ P ++ +T T+ AA Sbjct: 1 MSLTNEQQAAATSP-QSIIVTAGAGTGKTYMLVERYLYYLVEKGLSPLEIVAVTFTEKAA 59 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ R+ ++++ + PN+ D IL + T Sbjct: 60 QELRSRIR------------------SQVRQQLPNRPD----------ILAELEAAPIST 91 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 IHA I ++ P AN+ + F + ++ + K + E ++ L+ + Sbjct: 92 IHALASRICREHPQAANVAADFQVLEDLEGKIWLYEGLETALSKL 136 >gi|320191094|gb|EFW65744.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli O157:H7 str. EC1212] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|299822108|ref|ZP_07053994.1| ATP-dependent nuclease subunit A [Listeria grayi DSM 20601] gi|299815637|gb|EFI82875.1| ATP-dependent nuclease subunit A [Listeria grayi DSM 20601] Length = 1240 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 28/182 (15%) Query: 36 VSANAGSGKTHILVQRVLRLL---LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV R++ L A LL +T T A+AAEM RV Sbjct: 31 VAAAAGSGKTAVLVSRIIEKLKDETAGLQVDELLVVTFTNASAAEMKQRV---------- 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 A + K + P+ + K LL + T+H+FC ++++F A+ Sbjct: 81 -----EAALEKALQEDPDSRHLKKQIALL-------NYASISTLHSFCLDVIRKFYYVAD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212 I +F + + +S + +E ++ L D EE ++ F+ + +ND + L+ DI+ Sbjct: 129 IDPNFRLIEPLESGMIQDEVMEALLERHYGD--EENERFFHLVDSFTNDRSDDVLL-DIL 185 Query: 213 SN 214 + Sbjct: 186 TR 187 >gi|227325792|ref|ZP_03829816.1| DNA-dependent helicase II [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 720 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D ++ + + + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SDLLDGLNDKQRDAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 62 FTNKAAAEMRHRI-----------------------------------DHLIGT---SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ + T H +++ ++AN+ F I D + +L++ Sbjct: 84 GMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLK 124 >gi|313887981|ref|ZP_07821659.1| UvrD/REP helicase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845936|gb|EFR33319.1| UvrD/REP helicase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 975 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 35/144 (24%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A AG+GKT +L R + ++ N P +L +T TK AA EM R+ Sbjct: 22 AGAGTGKTRVLTSRFINIVKNNISPKHILAITFTKKAAQEMLGRI--------------- 66 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILE-TPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 ++ L++ +E L V TIH+F I+ + I Sbjct: 67 -------------------SKELVLNNIEFEERDLNVMTIHSFAHEIVGNYSFILGINPR 107 Query: 157 FAIADEEQSKKLIEEAKKSTLASI 180 F I +E + L+EEA K + + Sbjct: 108 FKILEEGEGDYLLEEAVKESFNNF 131 >gi|306821093|ref|ZP_07454709.1| ATP-dependent nuclease subunit A [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550786|gb|EFM38761.1| ATP-dependent nuclease subunit A [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 1149 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 44/207 (21%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 ++ VSA AGSGKT +L QR++ L+ + +++L LT T AAA EMS R+ + + + Sbjct: 18 NKNILVSAAAGSGKTAVLTQRIIDLITKEDVDITSMLVLTFTNAAANEMSARIQKKMYEY 77 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 ++ + NK H+ I G + T+H+FC I+++ Sbjct: 78 --------------LEENRNNK-------HIKKQI-SMISGASISTMHSFCIDIIRENFN 115 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209 ++I +F IA+ A++ + E + + F E E + DED L++ Sbjct: 116 FSDIDPNFVIAN---------------AATVAMIKQESISEIFEERYE-NQDEDF-LLLT 158 Query: 210 DIISNRTA----LKLIFFFFSYLWRRK 232 DI S+R + +I+ ++++ +K Sbjct: 159 DIYSSRYDDSKLINIIYKIYNFIQSKK 185 >gi|153953342|ref|YP_001394107.1| ATP-dependent exonuclease [Clostridium kluyveri DSM 555] gi|251764518|sp|A5N628|ADDA_CLOK5 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|146346223|gb|EDK32759.1| Predicted ATP-dependent exonuclease [Clostridium kluyveri DSM 555] Length = 1235 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 25/146 (17%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEII 86 P + V+A AG+GKT +LV+R+L+ ++ ++ LL +T T AAA+EM RV E + Sbjct: 16 PNCNLLVAAGAGTGKTAVLVERILQKVINDSEEVDIDKLLVVTFTNAAASEMKERVGEAL 75 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + ++L T SK + +L + TIH+FC +++ Sbjct: 76 S-------KLLELNCT------------SKNLQRQLALLNQSN---IMTIHSFCLKVIKN 113 Query: 147 FPLEANITSHFAIADEEQSKKLIEEA 172 ++ +F I D+ +SK L ++A Sbjct: 114 NFHRIDLDPNFRICDDTESKLLKQDA 139 >gi|255523029|ref|ZP_05390001.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans P7] gi|255513144|gb|EET89412.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans P7] Length = 862 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 40/156 (25%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 +S + ++LL ++ ++ + A+AG+GKT L +RV ++ A PS +LC+T T A Sbjct: 1 MSMNEQQELLINELEKNVILLASAGTGKTETLSKRVANIIDKGKAEPSQILCITFTNKAC 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ R+ I+ A + +IT V+T Sbjct: 61 KEIRERIEGIVGAS--------AKDIT------------------------------VKT 82 Query: 136 IHAFC-EAIMQQFPLEANITSHFAIADEEQSKKLIE 170 H+FC + I Q+ ++ + F I DEE ++L++ Sbjct: 83 FHSFCFDVIKQEAKKGTDVFTDFTIFDEEDCRELVK 118 >gi|219853971|ref|YP_002471093.1| hypothetical protein CKR_0628 [Clostridium kluyveri NBRC 12016] gi|251764517|sp|B9DZK4|ADDA_CLOK1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|219567695|dbj|BAH05679.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 1238 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 25/146 (17%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEII 86 P + V+A AG+GKT +LV+R+L+ ++ ++ LL +T T AAA+EM RV E + Sbjct: 19 PNCNLLVAAGAGTGKTAVLVERILQKVINDSEEVDIDKLLVVTFTNAAASEMKERVGEAL 78 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + ++L T SK + +L + TIH+FC +++ Sbjct: 79 S-------KLLELNCT------------SKNLQRQLALLNQSN---IMTIHSFCLKVIKN 116 Query: 147 FPLEANITSHFAIADEEQSKKLIEEA 172 ++ +F I D+ +SK L ++A Sbjct: 117 NFHRIDLDPNFRICDDTESKLLKQDA 142 >gi|168209034|ref|ZP_02634659.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens B str. ATCC 3626] gi|170712869|gb|EDT25051.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens B str. ATCC 3626] Length = 870 Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 95/211 (45%), Gaps = 49/211 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 +I+ + +Q + ++ + + A+AG+GKT+ L +RV ++ N+ PS +LC+T T A Sbjct: 1 MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 EMS RV++I+ + EIT ++ Sbjct: 61 CKEMSDRVMKIVGGEAK--------EIT------------------------------IR 82 Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190 T H+FC +++ + +I S F I DE+ +++I + S ++ N +++K Sbjct: 83 TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQKVID 142 Query: 191 ------AFYEILEISNDEDIETLISDIISNR 215 A E LE ++ +T+I +I R Sbjct: 143 FIKVERARIETLEDRVLDEYKTVIDEIFKFR 173 >gi|153004223|ref|YP_001378548.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5] gi|152027796|gb|ABS25564.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5] Length = 1196 Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 20/135 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-----HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 VSA AGSGKT LV+ RLL A P+ + +T T+ AA E++ R Sbjct: 25 VSAGAGSGKTTALVELCARLLSGEALGTPCAPAEIAAITFTEKAAEELAQR--------- 75 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 L + + S+A + L+ L TIH FC ++++ E Sbjct: 76 ------LRGAVAERARAACEADPGSEAARAWLERLDGLERLSAGTIHGFCGRLLREHAPE 129 Query: 151 ANITSHFAIADEEQS 165 A + FA+ADEE+S Sbjct: 130 AGLDPEFAVADEERS 144 >gi|299749616|ref|XP_002911398.1| ATP-dependent DNA helicase pcra [Coprinopsis cinerea okayama7#130] gi|298408518|gb|EFI27904.1| ATP-dependent DNA helicase pcra [Coprinopsis cinerea okayama7#130] Length = 966 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 42/159 (26%) Query: 15 DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTH 70 DL+ S QL A+ P S + A GSGKT +L R+ L+ N H P+++ +T Sbjct: 4 DLLKGLNSAQLKAATYPPNTSLQILAGPGSGKTRVLTTRIAHLI-TNCHLPPNSICAVTF 62 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R +TK+ GK E Sbjct: 63 TNKAANEMKER-------------------LTKLLGK------------------ERTAQ 85 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 LK+ T H+ C ++++ + ++ +F + D +SKK+I Sbjct: 86 LKLGTFHSLCARFLRKYSKQVSVPDNFTVCDAGESKKMI 124 >gi|116873698|ref|YP_850479.1| ATP-dependent nuclease, subunit A [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466555|sp|A0AL18|ADDA_LISW6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116742576|emb|CAK21700.1| ATP-dependent nuclease, subunit A [Listeria welshimeri serovar 6b str. SLCC5334] Length = 1235 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 25/127 (19%) Query: 36 VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV R++ L+ N + LL +T T A+AAEM +R+ + + Sbjct: 31 VAAAAGSGKTAVLVTRIIEKLVDETGNLNVDELLIVTFTNASAAEMKYRIGKSL------ 84 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 +E LS + P+ S + K LL + T+H+FC I+++ EA+ Sbjct: 85 -EEALS--------QNPDSSHLKKQVALL-------NYASISTLHSFCLEIIRKHYFEAD 128 Query: 153 ITSHFAI 159 I +F + Sbjct: 129 IDPNFRL 135 >gi|330959506|gb|EGH59766.1| putative UvrD helicase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 1144 Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 3/128 (2%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 LA DP RS + A AGSGKT L R+L L P +L +T T AAAE+ RV+ Sbjct: 56 LAIDPRRSLLLLAPAGSGKTSTLQMRLLSCLTVVDRPEEVLAITFTNMAAAEIVERVIGA 115 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + + + L+ E+ + + + + + + + +L P L++ T +FC ++ Sbjct: 116 LQQAATGIEPELAHELPQY---RLARLVLDRDKEMGWNLLLNPSRLRIMTFDSFCASLAS 172 Query: 146 QFPLEANI 153 + P+ + + Sbjct: 173 KTPIMSGL 180 >gi|188582350|ref|YP_001925795.1| UvrD/REP helicase [Methylobacterium populi BJ001] gi|179345848|gb|ACB81260.1| UvrD/REP helicase [Methylobacterium populi BJ001] Length = 1047 Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 7/134 (5%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 RS V A AGSGKT ++ R+ +L P ++ +T T+ AA+E+ RV E + Sbjct: 23 RSILVEAGAGSGKTAVMAGRIAAMLAEGVAPRSIAAVTFTELAASELLSRVREFV----- 77 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 +D + T+++ P+ + R L + TIH FC+ +++ +P EA Sbjct: 78 -ADLSVGTIATELRVALPDGLTQTH-RDNLAAASAAIDEITCSTIHGFCQRLIKPYPAEA 135 Query: 152 NITSHFAIADEEQS 165 +I ++ D + Sbjct: 136 DIDPGASVMDRNHA 149 >gi|218560877|ref|YP_002393790.1| DNA-dependent helicase II [Escherichia coli S88] gi|218367646|emb|CAR05431.1| DNA-dependent ATPase I and helicase II [Escherichia coli S88] Length = 720 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMTVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|82779008|ref|YP_405357.1| DNA-dependent helicase II [Shigella dysenteriae Sd197] gi|309784529|ref|ZP_07679167.1| DNA helicase II [Shigella dysenteriae 1617] gi|81243156|gb|ABB63866.1| DNA-dependent ATPase I and helicase II [Shigella dysenteriae Sd197] gi|308927635|gb|EFP73104.1| DNA helicase II [Shigella dysenteriae 1617] Length = 720 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|329297035|ref|ZP_08254371.1| DNA-dependent helicase II [Plautia stali symbiont] Length = 720 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 40/158 (25%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL++ +Q A + P + V A AGSGKT +LV R+ LL + N P +++ +T T Sbjct: 5 DLLNGLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM HR+ ++I + GG+ Sbjct: 65 KAAAEMRHRIDQLIGT--------------------------------------SQGGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 + T H +++ L+A + F I D E +L++ Sbjct: 87 IGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLK 124 >gi|218692089|ref|YP_002400301.1| DNA-dependent helicase II [Escherichia coli ED1a] gi|218429653|emb|CAR10617.2| DNA-dependent ATPase I and helicase II [Escherichia coli ED1a] Length = 720 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDTEDQLRLLK 124 >gi|317046397|ref|YP_004114045.1| DNA helicase II [Pantoea sp. At-9b] gi|316948014|gb|ADU67489.1| DNA helicase II [Pantoea sp. At-9b] Length = 720 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 40/158 (25%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL++ +Q A + P + V A AGSGKT +LV R+ LL + N P +++ +T T Sbjct: 5 DLLNGLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM HR+ ++I + GG+ Sbjct: 65 KAAAEMRHRIDQLIGT--------------------------------------SQGGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 + T H +++ L+A + F I D E +L++ Sbjct: 87 IGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLK 124 >gi|147677999|ref|YP_001212214.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Pelotomaculum thermopropionicum SI] gi|251764536|sp|A5D1P3|ADDA_PELTS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|146274096|dbj|BAF59845.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Pelotomaculum thermopropionicum SI] Length = 1269 Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 25/133 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A+AG+GKT +L +R++R + P LL +T T AAAAEM R+ L Sbjct: 36 VAASAGTGKTAVLAERIIRRITDPIKPVDVDRLLVVTFTSAAAAEMRERI--------RL 87 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + L+ EI+ ++P + + LL G + T+H+FC +++Q Sbjct: 88 A---LAREIS----RRPESGHLQRQAALL-------GRACISTVHSFCLDLLRQHFYRIG 133 Query: 153 ITSHFAIADEEQS 165 + F +ADE ++ Sbjct: 134 LDPSFRVADETEA 146 >gi|295111139|emb|CBL27889.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Synergistetes bacterium SGP1] Length = 1213 Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 28/152 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 V A AG+GKT +L R RLLL +A P +L LT+T AAA EM R+ + + A + Sbjct: 36 VGAGAGTGKTWVLSNRYARLLLTDADCLPCDILTLTYTDAAAGEMRRRIEDRVRALMDVP 95 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 D +S E + +LE + TIHAF ++++ L ++ Sbjct: 96 DAPVSQERRR-------------------EVLEGFSEAWISTIHAFAARLVRESGLALDV 136 Query: 154 TSHFAIADEEQSKKL-------IEEAKKSTLA 178 A+ Q+++ +EEA LA Sbjct: 137 DPRSAVVSGPQTERFWARVRDALEEAGLGELA 168 >gi|167761630|ref|ZP_02433757.1| hypothetical protein CLOSCI_04042 [Clostridium scindens ATCC 35704] gi|167660773|gb|EDS04903.1| hypothetical protein CLOSCI_04042 [Clostridium scindens ATCC 35704] Length = 1200 Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 25/155 (16%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 ++ TK +Q + R+ VSA AGSGKT +LV+R++ +L + P LL +T T+A Sbjct: 3 VTWTKEQQKVIDLRNRNILVSAAAGSGKTAVLVERIITMLTEDESPVDVDRLLIVTFTEA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ I K + P + + L+ ++ Sbjct: 63 AAAEMKERI---------------RNAIEKKLEEYPGNEHLKQQATLI-------HNAQI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 TIH+FC ++++ +I F I +E + K L Sbjct: 101 TTIHSFCLSVIRDHFHAIDIDPGFRIGEEGELKLL 135 >gi|152990115|ref|YP_001355837.1| putative recombination protein RecB [Nitratiruptor sp. SB155-2] gi|151421976|dbj|BAF69480.1| ATP-dependent DNA helicase, UvrD/REP family [Nitratiruptor sp. SB155-2] Length = 855 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 13/127 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AG+GKT+ L L L A+P ++ +T T AA EM RV++ + L +E Sbjct: 6 LKASAGTGKTYSLALYYLARLFEGANPYDIVAITFTNKAANEMRERVIDFLF---DLDEE 62 Query: 96 ILSAEITKIQGKKPNKSDMSKA---RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 L +I I K P M + R L++ L + TI AF + I+++F A+ Sbjct: 63 KLE-QIASIIQKDPKTLSMKQQQVIRKFLVS------RLNILTIDAFVQKILRKFAFFAS 115 Query: 153 ITSHFAI 159 ++ F I Sbjct: 116 LSPDFTI 122 >gi|291531717|emb|CBK97302.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Eubacterium siraeum 70/3] Length = 1235 Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 79/154 (51%), Gaps = 27/154 (17%) Query: 34 AWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A VSA AGSGKT +L QRV+RL+ N PS ++ +T T AA E+ R+ ++ Sbjct: 18 AIVSAGAGSGKTAVLTQRVVRLICDKNENIDPSKIVVVTFTVKAADELKARLDALMR--Q 75 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-FPL 149 +++ + SA++ ++ ++ + KAR + TI +FC +++++ L Sbjct: 76 RINEAVSSADVRFLRNQRMR---LRKAR--------------ISTISSFCISLLRENIDL 118 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 NI++ F++ DE L K L+ ++ D Sbjct: 119 ADNISAGFSVIDETAGGAL----KNDVLSDVLED 148 >gi|313207052|ref|YP_004046229.1| uvrd/rep helicase [Riemerella anatipestifer DSM 15868] gi|312446368|gb|ADQ82723.1| UvrD/REP helicase [Riemerella anatipestifer DSM 15868] gi|315022554|gb|EFT35581.1| ATP-dependent helicase [Riemerella anatipestifer RA-YM] gi|325335511|gb|ADZ11785.1| UvrD/REP helicase [Riemerella anatipestifer RA-GD] Length = 1044 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 11/134 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL 92 +SA+AGSGKT+ LV R+L L L +L LT T AA EM R+L+ + A++ Sbjct: 7 ISASAGSGKTYTLVIRILSLCLRTPDEKAIRYILALTFTNKAANEMKERILQWLEAFTR- 65 Query: 93 SDEILSAEITKI------QGKKPNKSDM-SKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 D + + E+ I QG K D+ +++ +L IL L + TI F +++ Sbjct: 66 EDYLQNNELKAIQSYLETQGIKLTIEDLHYRSKKVLDYILHHYSILNIGTIDKFNAKLVR 125 Query: 146 QFPLEANITSHFAI 159 F E + +F + Sbjct: 126 SFSYELGLAQNFNL 139 >gi|302875356|ref|YP_003843989.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans 743B] gi|307688937|ref|ZP_07631383.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans 743B] gi|302578213|gb|ADL52225.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans 743B] Length = 867 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 40/153 (26%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 K +QLL ++ + + A+AG+GKT L +R+ R++ + P +LC+T T A EM Sbjct: 8 NKEQQLLINEDENNILLLASAGTGKTDTLSKRIARIIESGKGKPEEILCITFTNKACREM 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ ++I S + ++T H+ Sbjct: 68 KERIEKVIGDSSR--------------------------------------NITIRTFHS 89 Query: 139 FCEAIMQ-QFPLEANITSHFAIADEEQSKKLIE 170 FC I++ + + +I + F I DEE K++I+ Sbjct: 90 FCFDILKVEAKKKTDIFTDFIIFDEEDCKEMIK 122 >gi|300930020|ref|ZP_07145453.1| DNA helicase II [Escherichia coli MS 187-1] gi|300462110|gb|EFK25603.1| DNA helicase II [Escherichia coli MS 187-1] Length = 700 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 39/142 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 1 PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 60 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + GG+ V T H +++ Sbjct: 61 --------------------------------------SQGGMWVGTFHGLAHRLLRAHH 82 Query: 149 LEANITSHFAIADEEQSKKLIE 170 ++AN+ F I D E +L++ Sbjct: 83 MDANLPQDFQILDSEDQLRLLK 104 >gi|164687184|ref|ZP_02211212.1| hypothetical protein CLOBAR_00825 [Clostridium bartlettii DSM 16795] gi|164603608|gb|EDQ97073.1| hypothetical protein CLOBAR_00825 [Clostridium bartlettii DSM 16795] Length = 1349 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 39/179 (21%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAA 76 T+ +Q + + V+A AGSGKT +LV+R+++++L + LL +T T AAA+ Sbjct: 7 TQEQQNVIDSRGGNLLVAAAAGSGKTAVLVERIIQMILNSDLKIDIDKLLVVTFTNAAAS 66 Query: 77 EMSHRVLEIITAW-------SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 EM R+ + I+ HL D+++ ++KA Sbjct: 67 EMRERIGDAISKKLDENPEDEHLQDQLVL---------------LNKA------------ 99 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + TIH+FC +++ + N+ +F I DE + + EA T + N+EE Sbjct: 100 --SITTIHSFCLEVIKSNFHKINLDPNFRIGDETECSLMKLEAIDETFDILYEQNDEEF 156 >gi|223936289|ref|ZP_03628202.1| recombination helicase AddA [bacterium Ellin514] gi|223895151|gb|EEF61599.1| recombination helicase AddA [bacterium Ellin514] Length = 1211 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 29/179 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTL---LCLTHTKAAAAEMSHRVLEIITAWSHL 92 V A AG+GKT LV+R L L+ P++L L +T T AAAAEM R+ Sbjct: 19 VVAGAGTGKTRTLVERCLHCLVEEKPPTSLDEILMVTFTDAAAAEMRQRI---------- 68 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 L E+ K + D+ L TI +T + T+H+FC +++Q E Sbjct: 69 -RARLEQELAK------HTDDLRWTEQL--TIFDTA---HIGTLHSFCLQLVRQHFYELE 116 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN---DEDIETLI 208 + + EE+++ L +E ++ L S + E +A +++++ D+ I TL+ Sbjct: 117 LDPQLTVLPEEEARLLADETLENLLQS-HYAGDAEGAEAVQQLIQVQGRGWDQPIRTLV 174 >gi|261749252|ref|YP_003256937.1| putative helicase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497344|gb|ACX83794.1| putative helicase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 855 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 20/138 (14%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEII 86 P+ +A+AGSGKT LV+ L LLL + HP +L +T T A+ E+ R+L+ I Sbjct: 9 PSTLKIYNASAGSGKTFFLVKNYLYLLLKSPHPEEFKRILAITFTNKASEEIKKRILQCI 68 Query: 87 TAWSH---------LSDEIL-SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 +S+ L D + S ++TK Q +++++L IL+ + TI Sbjct: 69 KEFSNQKIRKEYHFLFDHLTKSLKLTKDQL-------FERSKNILYAILDDFSSFSISTI 121 Query: 137 HAFCEAIMQQFPLEANIT 154 F ++ F + NI Sbjct: 122 DKFTYRTIRSFLYKKNIN 139 >gi|169237545|ref|YP_001690749.1| putative helicase [Halobacterium salinarum R1] gi|167728772|emb|CAP15640.1| putative helicase [Halobacterium salinarum R1] Length = 1211 Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 21/155 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAA 76 Q EQ A R+ ++A AG+GKT L +R + +L N P ++ +T T+ AAA Sbjct: 9 QLTEEQEDALVQGRNVAITAGAGTGKTTTLTERYVTILAENPSLTPENIITITFTRKAAA 68 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E++ RV E + D + + D +A + +L+ V TI Sbjct: 69 ELTERVRE------EVYDRLEAV-------------DSPEAYNRWRNVLDDLEDGYVHTI 109 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 HAFC ++++ +EA + F + DE+ + L E Sbjct: 110 HAFCARLLRERAVEAPVPLGFDVLDEDGAATLQRE 144 >gi|283780044|ref|YP_003370799.1| UvrD/REP helicase [Pirellula staleyi DSM 6068] gi|283438497|gb|ADB16939.1| UvrD/REP helicase [Pirellula staleyi DSM 6068] Length = 1049 Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 76/145 (52%), Gaps = 10/145 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AG+GKT+ L L+LL+ P +L T T+ AA E+ R+L + A + L+DE Sbjct: 17 IRASAGTGKTYRLTGHYLQLLVDGVPPRNILATTFTRKAAGEIFDRIL-LRLAQAALTDE 75 Query: 96 I---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 L+A I + Q ++K + LL +IL L+V T+ +F I LE + Sbjct: 76 ACQQLAAAIARPQ------LTVTKCQELLTSILSQLDALQVGTLDSFFARIATSLALELS 129 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL 177 + ++I + E+ ++ +A ++ L Sbjct: 130 LPLGWSICEYEEDLRMRRDAIEAVL 154 >gi|291563998|emb|CBL42814.1| Superfamily I DNA and RNA helicases [butyrate-producing bacterium SS3/4] Length = 656 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/50 (52%), Positives = 32/50 (64%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A GSGKT ++ R+ RLL A PS +L +T TKAAAAEM R L + Sbjct: 20 VLAGPGSGKTTVITHRIKRLLEAGVDPSGILVITFTKAAAAEMKERFLRL 69 >gi|256848517|ref|ZP_05553959.1| recombination helicase AddA [Lactobacillus coleohominis 101-4-CHN] gi|256714784|gb|EEU29763.1| recombination helicase AddA [Lactobacillus coleohominis 101-4-CHN] Length = 1281 Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 28/146 (19%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVLEI 85 +D R VSA+AGSGKT +LV RV++LL N H + +L +T TK AA M R+ + Sbjct: 15 NDRDRDILVSASAGSGKTAVLVDRVVKLLKENRHLNIDEMLLVTFTKEAAKNMRERIRKR 74 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + A S +D+ + +I ++ + TIH+FCE +++ Sbjct: 75 LVADS--NDQHMKTQINRL------------------------ALANISTIHSFCEQVIK 108 Query: 146 QFPLEANITSHFAIADEEQSKKLIEE 171 ++ + + + + + L++E Sbjct: 109 RYYYVIGLDPQYRLVTDATEQALLKE 134 >gi|210617937|ref|ZP_03291823.1| hypothetical protein CLONEX_04055 [Clostridium nexile DSM 1787] gi|210149076|gb|EEA80085.1| hypothetical protein CLONEX_04055 [Clostridium nexile DSM 1787] Length = 1217 Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 25/140 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R+ VSA AGSGKT +LV+R++ L + +P LL +T+T+AAA+EM R+ Sbjct: 18 RNILVSAAAGSGKTAVLVERIITRLTKDQNPIDVDQLLIVTYTEAAASEMKERI------ 71 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 I K + P+ + + L+ + +V TIH+FC ++++ + Sbjct: 72 ---------RTAIEKALEENPDNVHLQRQATLIHSA-------QVTTIHSFCLSVIRDYF 115 Query: 149 LEANITSHFAIADEEQSKKL 168 ++ F IA+E + K L Sbjct: 116 HTIDLDPGFRIAEEGELKLL 135 >gi|238918094|ref|YP_002931608.1| DNA-dependent helicase II [Edwardsiella ictaluri 93-146] gi|238867662|gb|ACR67373.1| DNA helicase II, putative [Edwardsiella ictaluri 93-146] Length = 719 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLAVENCSPFSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +I + G Sbjct: 62 FTNKAAAEMRHRIEALIGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ + T H +++ L+A + F I D E +L++ Sbjct: 84 GMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLK 124 >gi|298241785|ref|ZP_06965592.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963] gi|297554839|gb|EFH88703.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963] Length = 765 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 2/94 (2%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 I+ ++ + +A +A+++A AG+GKT ILVQR++RL+ P +LC+T T+ Sbjct: 22 IEFVANPQQAAAIAHTDGPAAFIAA-AGTGKTAILVQRLVRLIADVGVAPEAILCVTFTR 80 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQG 106 AAA EM R L+ + A L ++ + + G Sbjct: 81 AAAEEMEKRALKSLKARGLLIKDLKALRVVTFHG 114 >gi|292897919|ref|YP_003537288.1| DNA helicase II [Erwinia amylovora ATCC 49946] gi|291197767|emb|CBJ44862.1| DNA helicase II [Erwinia amylovora ATCC 49946] Length = 720 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMEVENCSPHSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ ++I G Sbjct: 62 FTNKAAAEMRHRIEQLIGT--------------------------------------RQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H +++ L+A + F I D E +L++ K+ Sbjct: 84 GMWIGTFHGLAHRLLRAHHLDARLPQDFQILDSEDQLRLLKRLIKA 129 >gi|269137484|ref|YP_003294184.1| DNA-dependent helicase II [Edwardsiella tarda EIB202] gi|267983144|gb|ACY82973.1| DNA-dependent helicase II [Edwardsiella tarda EIB202] gi|304557557|gb|ADM40221.1| ATP-dependent DNA helicase UvrD/PcrA [Edwardsiella tarda FL6-60] Length = 719 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLAVENCSPFSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +I + G Sbjct: 62 FTNKAAAEMRHRIEALIGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ + T H +++ L+A + F I D E +L++ Sbjct: 84 GMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLK 124 >gi|238916498|ref|YP_002930015.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium eligens ATCC 27750] gi|238871858|gb|ACR71568.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium eligens ATCC 27750] Length = 1220 Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 29/165 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 VSA AGSGKT +LV+R++ ++ N L+ +T TKAAAA+M ++ + A + Sbjct: 24 VSAAAGSGKTAVLVERIISMITDPDKNIDIDRLVVVTFTKAAAAQMKDKIRK---ALDSM 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 DE N D++ R IT+L ++ TI +FC I++ E N Sbjct: 81 LDE--------------NPGDVNLLRQ--ITLLNNA---QITTIDSFCLWIIRNHFPEVN 121 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 + F I DE + KKLIE L ++ + E + F+ +++ Sbjct: 122 LDPGFRIMDEGE-KKLIE---NDVLEDVLEEFYAEADEEFFNLVD 162 >gi|160938156|ref|ZP_02085512.1| hypothetical protein CLOBOL_03050 [Clostridium bolteae ATCC BAA-613] gi|158438960|gb|EDP16716.1| hypothetical protein CLOBOL_03050 [Clostridium bolteae ATCC BAA-613] Length = 1331 Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 25/195 (12%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 ++ T +Q + R+ VSA AGSGKT +LV+R+++++ P LL +T T A Sbjct: 3 VNWTSKQQEVIDSRNRNLLVSAAAGSGKTAVLVERIIQMISEGDRPLDIDQLLVMTFTNA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ A + + ++P + HL + P ++ Sbjct: 63 AAAEMRERI---------------GAAVEQKLKERP------EDEHLWLQAALIPQA-QI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TI +FC I++ +I F I DE + L + L + + +EE + Sbjct: 101 TTIDSFCLNIIRSHYNSLDIDPAFRIGDEGELSLLRGDCMGEMLENCYDEADEEFGRFVE 160 Query: 194 EILEISNDEDIETLI 208 +D IE +I Sbjct: 161 HFGRGKSDRGIEDVI 175 >gi|20806785|ref|NP_621956.1| ATP-dependent exoDNAse beta subunit [Thermoanaerobacter tengcongensis MB4] gi|81590788|sp|Q8RCZ0|ADDA_THETN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|20515247|gb|AAM23560.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Thermoanaerobacter tengcongensis MB4] Length = 1204 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 38/206 (18%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 ++ V+A AGSGKT +LV+R++ ++ P LL +T T AAA+EM R+ E + + Sbjct: 18 KNVLVAAAAGSGKTAVLVERIINIVTDPEKPVDIDRLLVVTFTNAAASEMRERIAERLIS 77 Query: 89 W--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 H D+ L+ ++T + NK+ ++ TIH+FC ++++ Sbjct: 78 LLDQHPEDKRLADQLTLL-----NKATIT-------------------TIHSFCLDVVRK 113 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 ++ F + D+ ++ L EA + + N+E F ++E + Sbjct: 114 HFFLLDLDPSFRVGDDTETLLLKLEAMEELFEELYEKNDE----GFLLLVESYGGTKGDQ 169 Query: 207 LISDIISNRTALKLIFFFFSYLWRRK 232 + D++ LKL F S W K Sbjct: 170 YLQDVL-----LKLYGFIRSLPWPEK 190 >gi|21666098|gb|AAM73555.1| DNA helicase II [Escherichia coli] gi|21666100|gb|AAM73556.1| DNA helicase II [Escherichia coli] gi|21666102|gb|AAM73557.1| DNA helicase II [Escherichia coli] gi|21666104|gb|AAM73558.1| DNA helicase II [Escherichia coli] gi|21666106|gb|AAM73559.1| DNA helicase II [Escherichia coli] gi|21666108|gb|AAM73560.1| DNA helicase II [Escherichia coli] gi|21666110|gb|AAM73561.1| DNA helicase II [Escherichia coli] gi|21666112|gb|AAM73562.1| DNA helicase II [Escherichia coli] gi|21666116|gb|AAM73564.1| DNA helicase II [Escherichia coli] gi|21666118|gb|AAM73565.1| DNA helicase II [Escherichia coli] gi|21666120|gb|AAM73566.1| DNA helicase II [Escherichia coli] gi|21666122|gb|AAM73567.1| DNA helicase II [Escherichia coli] gi|21666124|gb|AAM73568.1| DNA helicase II [Escherichia coli] gi|21666126|gb|AAM73569.1| DNA helicase II [Escherichia coli] gi|21666128|gb|AAM73570.1| DNA helicase II [Escherichia coli] gi|21666130|gb|AAM73571.1| DNA helicase II [Escherichia coli] gi|21666132|gb|AAM73572.1| DNA helicase II [Escherichia coli] gi|21666134|gb|AAM73573.1| DNA helicase II [Escherichia coli] gi|21666136|gb|AAM73574.1| DNA helicase II [Escherichia coli] gi|21666138|gb|AAM73575.1| DNA helicase II [Escherichia coli] gi|21666140|gb|AAM73576.1| DNA helicase II [Escherichia coli] gi|21666142|gb|AAM73577.1| DNA helicase II [Escherichia coli] gi|21666144|gb|AAM73578.1| DNA helicase II [Escherichia coli] gi|21666146|gb|AAM73579.1| DNA helicase II [Escherichia coli] gi|21666148|gb|AAM73580.1| DNA helicase II [Escherichia coli] gi|21666150|gb|AAM73581.1| DNA helicase II [Escherichia coli] gi|21666152|gb|AAM73582.1| DNA helicase II [Escherichia coli] gi|21666154|gb|AAM73583.1| DNA helicase II [Escherichia coli] gi|21666156|gb|AAM73584.1| DNA helicase II [Escherichia coli] gi|21666159|gb|AAM73585.1| DNA helicase II [Escherichia coli] gi|21666161|gb|AAM73586.1| DNA helicase II [Escherichia coli] gi|21666163|gb|AAM73587.1| DNA helicase II [Escherichia coli] gi|21666165|gb|AAM73588.1| DNA helicase II [Escherichia coli] gi|21666167|gb|AAM73589.1| DNA helicase II [Escherichia coli] gi|21666169|gb|AAM73590.1| DNA helicase II [Escherichia coli] gi|21666171|gb|AAM73591.1| DNA helicase II [Escherichia coli] gi|21666173|gb|AAM73592.1| DNA helicase II [Escherichia coli] gi|21666175|gb|AAM73593.1| DNA helicase II [Escherichia coli] gi|21666177|gb|AAM73594.1| DNA helicase II [Escherichia coli] gi|21666179|gb|AAM73595.1| DNA helicase II [Escherichia coli] gi|21666181|gb|AAM73596.1| DNA helicase II [Escherichia coli] gi|21666183|gb|AAM73597.1| DNA helicase II [Escherichia coli] gi|21666185|gb|AAM73598.1| DNA helicase II [Escherichia coli] gi|21666187|gb|AAM73599.1| DNA helicase II [Escherichia coli] gi|21666189|gb|AAM73600.1| DNA helicase II [Escherichia coli] gi|21666191|gb|AAM73601.1| DNA helicase II [Escherichia coli] gi|21666193|gb|AAM73602.1| DNA helicase II [Escherichia coli] gi|21666195|gb|AAM73603.1| DNA helicase II [Escherichia coli] gi|21666197|gb|AAM73604.1| DNA helicase II [Escherichia coli] gi|21666199|gb|AAM73605.1| DNA helicase II [Escherichia coli] gi|21666202|gb|AAM73606.1| DNA helicase II [Escherichia coli] gi|21666204|gb|AAM73607.1| DNA helicase II [Escherichia coli] gi|21666206|gb|AAM73608.1| DNA helicase II [Escherichia coli] gi|21666208|gb|AAM73609.1| DNA helicase II [Escherichia coli] gi|21666211|gb|AAM73610.1| DNA helicase II [Escherichia coli] gi|21666213|gb|AAM73611.1| DNA helicase II [Escherichia coli] gi|21666215|gb|AAM73612.1| DNA helicase II [Escherichia coli] gi|21666217|gb|AAM73613.1| DNA helicase II [Escherichia coli] gi|21666219|gb|AAM73614.1| DNA helicase II [Escherichia coli] gi|21666223|gb|AAM73616.1| DNA helicase II [Escherichia coli] gi|21666225|gb|AAM73617.1| DNA helicase II [Escherichia coli] gi|21666227|gb|AAM73618.1| DNA helicase II [Escherichia coli] gi|21666229|gb|AAM73619.1| DNA helicase II [Escherichia coli] gi|21666231|gb|AAM73620.1| DNA helicase II [Escherichia coli] gi|21666233|gb|AAM73621.1| DNA helicase II [Escherichia coli] gi|21666236|gb|AAM73622.1| DNA helicase II [Escherichia coli] gi|21666238|gb|AAM73623.1| DNA helicase II [Escherichia coli] gi|21666240|gb|AAM73624.1| DNA helicase II [Escherichia coli] gi|21666242|gb|AAM73625.1| DNA helicase II [Escherichia coli] gi|21666244|gb|AAM73626.1| DNA helicase II [Escherichia coli] Length = 133 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 39/147 (26%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 1 PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 60 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + GG+ V T H +++ Sbjct: 61 --------------------------------------SQGGMWVGTFHGLAHRLLRAHH 82 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKS 175 ++AN+ F I D E +L++ K+ Sbjct: 83 MDANLPQDFQILDSEDQLRLLKRLIKA 109 >gi|289450290|ref|YP_003475636.1| putative ATP-dependent nuclease subunit A [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184837|gb|ADC91262.1| putative ATP-dependent nuclease subunit A [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 1448 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 102/225 (45%), Gaps = 50/225 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAA 75 I+ T +Q + + P + VSA+AGSGKT +L +R+L LL + L+ +T T+AAA Sbjct: 5 INFTAEQQAVLTAPIGNILVSASAGSGKTAVLTERILEHLLSGQTELNRLVVVTFTEAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +M ++ I A KI P+++ + + + + G + T Sbjct: 65 KQMKDKIRRKILA--------------KIPSCCPDEAAILQDQMAYMP------GADIST 104 Query: 136 IHAFCEAIMQQF----------PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD-N 184 +HAFC+ I+++F PL + + F D ++ L+++A L I + + Sbjct: 105 MHAFCKKIIKEFIYVLRDDKGNPL---LDTEFKTLDGTEAALLLQQALDDVLNQIYVGID 161 Query: 185 NEELKK---------------AFYEILEISNDEDIETLISDIISN 214 + EL K AFY +L+ + + + +++SN Sbjct: 162 HGELPKICWDFVGLSPAAAQMAFYRLLDSCDFNGDDAALRELLSN 206 >gi|260662573|ref|ZP_05863468.1| recombination helicase AddA [Lactobacillus fermentum 28-3-CHN] gi|260553264|gb|EEX26207.1| recombination helicase AddA [Lactobacillus fermentum 28-3-CHN] Length = 1337 Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 37/172 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL----LLANAHPST------L 65 + + +K ++ +D + VSA+AGSGKT +LV+RV++L L +A PS + Sbjct: 2 VFTPSKEQEPAINDRQKDILVSASAGSGKTAVLVERVIQLMETGLSKDAKPSERPNIDDI 61 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T AA M R+ + +DE + A++ AR L I Sbjct: 62 LMVTFTTDAAKNMRDRIRRRLVG---ATDEHMKAQV---------------ARLALANI- 102 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 TIH+FCE +++++ ++ F + D+ + + L E+A + TL Sbjct: 103 --------STIHSFCEQLIKRYYYVIDLDPQFRLIDDAEQQLLKEQAWQVTL 146 >gi|291303528|ref|YP_003514806.1| ATP-dependent DNA helicase PcrA [Stackebrandtia nassauensis DSM 44728] gi|290572748|gb|ADD45713.1| ATP-dependent DNA helicase PcrA [Stackebrandtia nassauensis DSM 44728] Length = 762 Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 47/156 (30%) Query: 28 SDPTRSA--------WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78 +DP R A + A AGSGKT +L QR+ L+ + HP +L +T T AAAEM Sbjct: 24 NDPQRQAVLHEGPPLLIVAGAGSGKTRVLTQRIAHLVAVRGVHPGEILAITFTNKAAAEM 83 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ N++ M + V T HA Sbjct: 84 RDRVSSVVG----------------------NRARM----------------MWVLTFHA 105 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 C I+++ N+ S F + D + S++L+++ + Sbjct: 106 ACMRILRREHERLNLKSTFTVYDSDDSRRLMQQVAR 141 >gi|312170748|emb|CBX79010.1| DNA helicase II [Erwinia amylovora ATCC BAA-2158] Length = 723 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 7 SDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMEVENCSPHSIMAVT 64 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ ++I G Sbjct: 65 FTNKAAAEMRHRIEQLIGT--------------------------------------RQG 86 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H +++ L+A + F I D E +L++ K+ Sbjct: 87 GMWIGTFHGLAHRLLRAHHLDARLPQDFQILDSEDQLRLLKRLIKA 132 >gi|292486682|ref|YP_003529552.1| DNA helicase II [Erwinia amylovora CFBP1430] gi|291552099|emb|CBA19136.1| DNA helicase II [Erwinia amylovora CFBP1430] Length = 723 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 7 SDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMEVENCSPHSIMAVT 64 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ ++I G Sbjct: 65 FTNKAAAEMRHRIEQLIGT--------------------------------------RQG 86 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H +++ L+A + F I D E +L++ K+ Sbjct: 87 GMWIGTFHGLAHRLLRAHHLDARLPQDFQILDSEDQLRLLKRLIKA 132 >gi|331002448|ref|ZP_08325966.1| recombination helicase AddA [Lachnospiraceae oral taxon 107 str. F0167] gi|330410264|gb|EGG89698.1| recombination helicase AddA [Lachnospiraceae oral taxon 107 str. F0167] Length = 1148 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 74/148 (50%), Gaps = 21/148 (14%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 T+++Q S VSA AGSGKT +LV+R+++ + + +P +LL +T T+AAAA Sbjct: 3 TEAQQAAIDIKKGSILVSAAAGSGKTAVLVERIIKKITDSKNPIDVDSLLVMTFTRAAAA 62 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 M + I +A + +++ + N + + + I + K+ T Sbjct: 63 SMKEK--------------IYNALLKEMEKYENNTKEFKRLKEQSILL----SSAKIMTT 104 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQ 164 +FC +I+++ + +I F +ADE + Sbjct: 105 DSFCLSIIKENIDKIDIDQAFNVADESE 132 >gi|170764220|ref|ZP_02638287.2| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens CPE str. F4969] gi|170715785|gb|EDT27967.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens CPE str. F4969] Length = 876 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 95/211 (45%), Gaps = 49/211 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 +I+ + +Q + ++ + + A+AG+GKT+ L +RV ++ N+ PS +LC+T T A Sbjct: 7 MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 EMS RV++I+ + EIT ++ Sbjct: 67 CKEMSDRVMKIVGGE--------AKEIT------------------------------IR 88 Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190 T H+FC +++ + +I S F I DE+ +++I + S ++ N +++K Sbjct: 89 TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQKVID 148 Query: 191 ------AFYEILEISNDEDIETLISDIISNR 215 A E LE ++ +T+I +I R Sbjct: 149 FIKVERARIETLEDRVLDEYKTVIDEIFKFR 179 >gi|110799297|ref|YP_694494.1| ATP-dependent nuclease, subunit A [Clostridium perfringens ATCC 13124] gi|122959147|sp|Q0TV46|ADDA_CLOP1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|110673944|gb|ABG82931.1| ATP-dependent nuclease, subunit A [Clostridium perfringens ATCC 13124] Length = 1271 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 36/198 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R+++++ +P LL +T T AAA+EM R+ Sbjct: 22 VAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAASEMRERI---------- 71 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151 I+K K P+ + + LL + T+H+FC E I F L Sbjct: 72 -----GDAISKALEKDPSSEALQRQLALL-------NRASITTMHSFCLEVIKNNFHL-I 118 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 ++ F I D+ + E K+ LA + D + + F +++E + ++ I Sbjct: 119 DLDPGFRIGDQTEC----ELIKQDILADLFEDMYAKDDECFKDLVEAYGGSKSDDNLNSI 174 Query: 212 ISNRTALKLIFFFFSYLW 229 I LK F S W Sbjct: 175 I-----LKFYNFIMSGPW 187 >gi|295109449|emb|CBL23402.1| recombination helicase AddA, Firmicutes type [Ruminococcus obeum A2-162] Length = 1241 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 25/172 (14%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 T+ +Q + S R+ VSA AGSGKT +LV+R+L + P LL +T T+AAA Sbjct: 6 TEEQQKVISLRDRNILVSAAAGSGKTAVLVERILSKICDPKKPVDIDRLLIMTFTRAAAG 65 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ SA I + P+ + + L+ ++ TI Sbjct: 66 EMKERI---------------SAAIEQKLYDNPDNEHLQRQTSLI-------HNAQITTI 103 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 FC I++ + ++ + A+E + K L E+ K L +E+ Sbjct: 104 DGFCAYIIRNYFHMIDLDPGYRTAEEGELKLLREDVMKEVLEEAYAQKDEKF 155 >gi|227357154|ref|ZP_03841523.1| excision endonuclease subunit UvrD [Proteus mirabilis ATCC 29906] gi|227162686|gb|EEI47653.1| excision endonuclease subunit UvrD [Proteus mirabilis ATCC 29906] Length = 718 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 39/147 (26%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ LL + A P +++ +T T AAAEM HR+ ++I Sbjct: 21 PRVNMLVLAGAGSGKTRVLVHRIAWLLSVEQASPFSIMAVTFTNKAAAEMRHRIEDLIGT 80 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + GG+ + T H+ +++ Sbjct: 81 --------------------------------------SQGGMWIGTFHSLAHRLLRAHY 102 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKS 175 L+A + F I D + +LI KS Sbjct: 103 LDAGLPQDFQIIDSDDQYRLIRRIVKS 129 >gi|322379132|ref|ZP_08053529.1| Putative ATP-DEPENDENT HELICASE [Helicobacter suis HS1] gi|322380437|ref|ZP_08054639.1| ATP-dependent helicase [Helicobacter suis HS5] gi|321147148|gb|EFX41846.1| ATP-dependent helicase [Helicobacter suis HS5] gi|321148428|gb|EFX42931.1| Putative ATP-DEPENDENT HELICASE [Helicobacter suis HS1] Length = 900 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 18/148 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA------- 88 + A+AGSGKT L R + LL A P+T+L LT T AA+EM R+ + + Sbjct: 13 LKASAGSGKTFALTLRYIALLFEGAKPNTILTLTFTNKAASEMRERIYNTLASLHTESQI 72 Query: 89 WSH-----LSDEILSAEITKIQGKKPNKS---DMSKARHLLITILETPGGLKVQTIHAFC 140 W+ SD + A + +Q K N S K+ + L+ +QTI AF Sbjct: 73 WARNKKYIPSDSKIQAILESLQ-KNYNLSWSQIAPKSEDVYTQFLKADPA--IQTIDAFF 129 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKL 168 + ++++F + S F +++ + KL Sbjct: 130 QKVLRKFSYFVGVRSEFQVSNVSKEDKL 157 >gi|227514157|ref|ZP_03944206.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus fermentum ATCC 14931] gi|227087528|gb|EEI22840.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus fermentum ATCC 14931] Length = 1337 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 37/172 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL----LLANAHPST------L 65 + + +K ++ +D + VSA+AGSGKT +LV+RV++L L +A PS + Sbjct: 2 VFTPSKEQEPAINDRQKDILVSASAGSGKTAVLVERVIQLMETGLSKDAKPSERPNIDDI 61 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T AA M R+ + +DE + A++ AR L I Sbjct: 62 LMVTFTTDAAKNMRDRIRRRLVG---ATDEHMKAQV---------------ARLALANI- 102 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 TIH+FCE +++++ ++ F + D+ + + L E+A + TL Sbjct: 103 --------STIHSFCEQLIKRYYYVIDLDPQFRLIDDAEQQLLKEQAWQVTL 146 >gi|197287153|ref|YP_002153025.1| DNA-dependent helicase II [Proteus mirabilis HI4320] gi|194684640|emb|CAR46555.1| DNA helicase II [Proteus mirabilis HI4320] Length = 718 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 43/158 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ LL + A P +++ +T T AAAEM HR+ ++I Sbjct: 21 PRVNMLVLAGAGSGKTRVLVHRIAWLLSVEQASPFSIMAVTFTNKAAAEMRHRIEDLIGT 80 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + GG+ + T H+ +++ Sbjct: 81 --------------------------------------SQGGMWIGTFHSLAHRLLRAHY 102 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 L+A + F I D + +LI + + S+ LD+ + Sbjct: 103 LDAGLPQDFQIIDSDDQYRLI----RRIVKSMALDDKQ 136 >gi|238926789|ref|ZP_04658549.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas flueggei ATCC 43531] gi|238885321|gb|EEQ48959.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas flueggei ATCC 43531] Length = 1260 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 26/182 (14%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTK 72 D ++ T +Q + V+A AGSGKT +LV+R++ + N S +L LT TK Sbjct: 3 DRLTFTADQQRAIDARGHNILVAAAAGSGKTRVLVERIIS-QVRNEELSLDRILVLTFTK 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKK--PNKSDMSKARHLLITILETPGG 130 AAA EM R+ + L+AEI I G + D + + +L+T G Sbjct: 62 AAALEMRERI-----------EAALNAEIDAIAGDAGISKEIDRLERQRILLT------G 104 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + T H+FC+ ++Q +I F +A E++ + L K+ + ++ EE Sbjct: 105 ADISTFHSFCQRLLQAHIDATDIPPTFRLASEQEIRLL----KRDVMDELLERKYEEASD 160 Query: 191 AF 192 F Sbjct: 161 EF 162 >gi|21666114|gb|AAM73563.1| DNA helicase II [Escherichia coli] Length = 133 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 39/147 (26%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 1 PRTNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 60 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + GG+ V T H +++ Sbjct: 61 --------------------------------------SQGGMWVGTFHGLAHRLLRAHH 82 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKS 175 ++AN+ F I D E +L++ K+ Sbjct: 83 MDANLPQDFQILDSEDQLRLLKRLIKA 109 >gi|82546164|ref|YP_410111.1| DNA-dependent helicase II [Shigella boydii Sb227] gi|81247575|gb|ABB68283.1| DNA-dependent ATPase I and helicase II [Shigella boydii Sb227] gi|320185474|gb|EFW60243.1| ATP-dependent DNA helicase UvrD/PcrA [Shigella flexneri CDC 796-83] gi|332089046|gb|EGI94157.1| DNA helicase II [Shigella boydii 3594-74] Length = 720 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCLPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|300712678|ref|YP_003738491.1| putative helicase [Halalkalicoccus jeotgali B3] gi|299126362|gb|ADJ16700.1| putative helicase [Halalkalicoccus jeotgali B3] Length = 1253 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 25/185 (13%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL--LANAHPSTLL 66 + S T + T+ +Q LA D ++ ++A AG+GKT L +R +L P+ ++ Sbjct: 19 QASATKEFELTTEQQQALALD--QNIAITAGAGTGKTTTLTERYRHILTEYPELSPTQIV 76 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T+ A +EM ++ ++ D + SA + K D+ A Sbjct: 77 TITFTRDATSEMRDKIRGVV------DDALESASAETYDRWQRAKDDIEDAY-------- 122 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + TIH FC I++++ +E + F D ++ LI+ + LA I LD Sbjct: 123 ------IHTIHGFCSRILEEYAVETGVHPDFETLDNGEAVTLIDRTVRDVLAYI-LDEAT 175 Query: 187 ELKKA 191 L+ A Sbjct: 176 HLRAA 180 >gi|251787838|ref|YP_003002559.1| DNA-dependent helicase II [Dickeya zeae Ech1591] gi|247536459|gb|ACT05080.1| DNA helicase II [Dickeya zeae Ech1591] Length = 720 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 40/163 (24%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL+ +Q A RS V A AGSGKT +LV R+ LL + N P +++ +T T Sbjct: 5 DLLDSLNDKQRDAVAAARSNMLVLAGAGSGKTRVLVHRIAWLLTVENCSPYSIMAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM HR+ D++L + GG+ Sbjct: 65 KAAAEMRHRI-----------DQLLGT---------------------------SQGGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + T H +++ L+A + F I D E +L++ K+ Sbjct: 87 IGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLLKRLIKA 129 >gi|224437387|ref|ZP_03658358.1| putative recombination protein RecB [Helicobacter cinaedi CCUG 18818] gi|313143850|ref|ZP_07806043.1| helicase [Helicobacter cinaedi CCUG 18818] gi|313128881|gb|EFR46498.1| helicase [Helicobacter cinaedi CCUG 18818] Length = 991 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 26/148 (17%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 EQ LA + A+AGSGKT L R + LL A+P +L LT TK A+ EM R+ Sbjct: 3 EQFLA--------LKASAGSGKTFSLSLRFIYLLFQGANPHQILTLTFTKKASNEMYRRI 54 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH----------LLITILETPGGLK 132 E HL +LS E + K+ + K L T +++ + Sbjct: 55 YE------HLKSLLLSFETGTFESNDIYKALLQKGLSHNQISENIAALYHTFMQSSS--R 106 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIA 160 + TI +F +++++F ++S F I Sbjct: 107 ITTIDSFFHSVLKKFCWYVGVSSRFEIG 134 >gi|315585943|gb|ADU40324.1| helicase [Helicobacter pylori 35A] Length = 949 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 19/165 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII--------- 86 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQKENLE 69 Query: 87 -TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 S IL E+ + P+ S A+ + L +++ TI AF ++I++ Sbjct: 70 NEKEKEKSQNILK-ELEEKYRLDPSFVQNS-AQKIYQRFLNAE--IRISTIDAFFQSILR 125 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 +F ++++F + E +K ++ +S L+++ NN++L++ Sbjct: 126 KFCWFVGLSANFEV--NEDTKAYQQQLNESFLSAL---NNKQLEE 165 >gi|291615722|ref|YP_003518464.1| UvrD [Pantoea ananatis LMG 20103] gi|291150752|gb|ADD75336.1| UvrD [Pantoea ananatis LMG 20103] Length = 723 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 3/77 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 7 SELLDGLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVT 64 Query: 70 HTKAAAAEMSHRVLEII 86 T AAAEM HR+ ++I Sbjct: 65 FTNKAAAEMRHRIEQLI 81 >gi|295401125|ref|ZP_06811099.1| recombination helicase AddA [Geobacillus thermoglucosidasius C56-YS93] gi|294976918|gb|EFG52522.1| recombination helicase AddA [Geobacillus thermoglucosidasius C56-YS93] Length = 1238 Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 25/137 (18%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ + A P LL +T T A+A+EM R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIQKITAKEDPVDVDRLLVVTFTNASASEMKTRIAE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 I + K+PN + + LL + TIH+FC +++++ Sbjct: 83 -----------AIERELDKQPNSLHLRRQLSLL-------NRASISTIHSFCLDVVRKYY 124 Query: 149 LEANITSHFAIADEEQS 165 +I F IAD+ ++ Sbjct: 125 YLIDIDPVFRIADDTEA 141 >gi|325499218|gb|EGC97077.1| DNA helicase II [Escherichia fergusonii ECD227] Length = 738 Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 22 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 79 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 80 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 101 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ V T H +++ ++AN+ F I D E +L++ K+ Sbjct: 102 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKA 147 >gi|259046745|ref|ZP_05737146.1| ATP-dependent deoxyribonuclease subunit A [Granulicatella adiacens ATCC 49175] gi|259036641|gb|EEW37896.1| ATP-dependent deoxyribonuclease subunit A [Granulicatella adiacens ATCC 49175] Length = 1231 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 21/138 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL-EIITAWSHLSD 94 VSA+AGSGKT +LV+R+L + + LL +T T+ AA EM R+ ++ A +D Sbjct: 28 VSASAGSGKTKVLVERILMHIQEGIDINELLVVTFTELAAKEMKERLRSKLEEAIEKSTD 87 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E+L A+ L + P + + TIH+FC +++++ A I Sbjct: 88 EVLQQRF---------------AKQLQL----IPSAM-ISTIHSFCMKVIRRYFYLAGID 127 Query: 155 SHFAIADEEQSKKLIEEA 172 F + DE + + L E+ Sbjct: 128 PVFTMMDEIEGQLLQEKV 145 >gi|312112099|ref|YP_003990415.1| recombination helicase AddA [Geobacillus sp. Y4.1MC1] gi|311217200|gb|ADP75804.1| recombination helicase AddA [Geobacillus sp. Y4.1MC1] Length = 1238 Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 25/137 (18%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ + A P LL +T T A+A+EM R+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERIIQKITAKEDPVDVDRLLVVTFTNASASEMKTRIAE---- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 I + K+PN + + LL + TIH+FC +++++ Sbjct: 83 -----------AIERELDKQPNSLHLRRQLSLL-------NRASISTIHSFCLDVVRKYY 124 Query: 149 LEANITSHFAIADEEQS 165 +I F IAD+ ++ Sbjct: 125 YLIDIDPVFRIADDTEA 141 >gi|18309003|ref|NP_560937.1| ATP-dependent deoxyribonuclease chain A [Clostridium perfringens str. 13] gi|81768348|sp|Q8XPE2|ADDA_CLOPE RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|18143678|dbj|BAB79727.1| ATP-dependent deoxyribonuclease chain A [Clostridium perfringens str. 13] Length = 1268 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 36/198 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R+++++ +P LL +T T AAA+EM R+ Sbjct: 22 VAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAASEMRERI---------- 71 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151 I+K K P+ + + LL + T+H+FC E I F L Sbjct: 72 -----GDAISKALEKDPSSKVLQRQLALL-------NRASITTMHSFCLEVIKNNFHL-I 118 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 ++ F I D+ + E K+ LA + D + + F +++E + ++ I Sbjct: 119 DLDPGFRIGDQTEC----ELIKQDILADLFEDMYAKDDECFKDLVEAYGGSKSDDNLNSI 174 Query: 212 ISNRTALKLIFFFFSYLW 229 I LK F S W Sbjct: 175 I-----LKFYNFIMSGPW 187 >gi|289422630|ref|ZP_06424472.1| ATP-dependent nuclease subunit A [Peptostreptococcus anaerobius 653-L] gi|289156981|gb|EFD05604.1| ATP-dependent nuclease subunit A [Peptostreptococcus anaerobius 653-L] Length = 1375 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 25/108 (23%) Query: 41 GSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 GSGKT +L++R++RL+L +P LL +T TKAAA EM RV Sbjct: 27 GSGKTAVLIERIIRLILDPVNPVDIDRLLVVTFTKAAAREMRERV--------------- 71 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 I K P+ + + + R LL + TI +FC ++M+ Sbjct: 72 GLAIEKELALDPDNTRLQRQRMLL-------NKADITTIDSFCNSVMR 112 >gi|162448347|ref|YP_001610714.1| ATP-dependent deoxyribonuclease subunit A [Sorangium cellulosum 'So ce 56'] gi|161158929|emb|CAN90234.1| ATP-dependent deoxyribonuclease subunit A [Sorangium cellulosum 'So ce 56'] Length = 1254 Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 32/169 (18%) Query: 18 SQTKSEQLLASDPTR---------SAWVSANAGSGKTHILVQRVLRLLL-----ANAHPS 63 ++ + + LA +P R + V A AG+GKT LV R++ +L Sbjct: 6 TRPRGARELADEPARRRIRDDLRTTLVVEAAAGTGKTTALVSRIVAVLRRAPEEGGGTLD 65 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 ++ +T T+ AA EM R L AEI + + P +AR L Sbjct: 66 RIVAVTFTEKAAGEMKLR---------------LRAEIERAR-SDPGAGPAERAR--LDE 107 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 L ++ TIH+FC +++++P+EA + F +A +Q++ L ++A Sbjct: 108 ALAHLEAARIGTIHSFCADLLREWPVEARVDPLFQVAAADQAEALFDQA 156 >gi|315640911|ref|ZP_07896007.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus italicus DSM 15952] gi|315483329|gb|EFU73829.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus italicus DSM 15952] Length = 1226 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 23/178 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ILVQRV+ L + LL +T T+AAA EM R+ Sbjct: 29 VSASAGSGKTRILVQRVIEKLKNGVNIDELLVVTFTEAAAREMKQRI------------- 75 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 E+ K + +++ + R L T+L ++ T+H+FC +++++ + Sbjct: 76 --ETELHKTIQQARSEAMIQHFRKQL-TLLPMA---QISTLHSFCLKVIRRYYYLVELDP 129 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDII 212 F + +E LI+E +M + + + F+++L+ S+D E + I+ Sbjct: 130 GFRLLTDETEALLIQE---DVWNELMEEEYDASRPEFFQLLQNFSSDRSDEPVTEMIL 184 >gi|254039025|ref|ZP_04873076.1| DNA helicase II [Escherichia sp. 1_1_43] gi|226838716|gb|EEH70744.1| DNA helicase II [Escherichia sp. 1_1_43] Length = 738 Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 22 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 79 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 80 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 101 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ V T H +++ ++AN+ F I D E +L++ K+ Sbjct: 102 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKA 147 >gi|237702822|ref|ZP_04533303.1| DNA helicase II [Escherichia sp. 3_2_53FAA] gi|26110983|gb|AAN83167.1|AE016769_282 DNA helicase II [Escherichia coli CFT073] gi|91074912|gb|ABE09793.1| DNA helicase II [Escherichia coli UTI89] gi|226902993|gb|EEH89252.1| DNA helicase II [Escherichia sp. 3_2_53FAA] Length = 738 Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 22 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 79 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 80 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 101 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ V T H +++ ++AN+ F I D E +L++ K+ Sbjct: 102 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKA 147 >gi|226224875|ref|YP_002758982.1| ATP-dependent deoxyribonuclease (subunit A) [Listeria monocytogenes Clip81459] gi|225877337|emb|CAS06051.1| Putative ATP-dependent deoxyribonuclease (subunit A) [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 1235 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 30/166 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV R++ L+ AN + LL +T T A+AAEM R+ Sbjct: 31 VAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASAAEMKFRI---------- 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + + + P+ + + + LL + T+H+FC I++++ +A+ Sbjct: 81 -----GKGLEEALAQNPDSTHLKRQVALL-------NYASISTLHSFCLEIIRKYYFDAD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE 197 I +F + + +S + +E ++ L ++NNE F+ ++E Sbjct: 129 IDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNE----PFFHLVE 170 >gi|170769888|ref|ZP_02904341.1| DNA helicase II [Escherichia albertii TW07627] gi|170121326|gb|EDS90257.1| DNA helicase II [Escherichia albertii TW07627] Length = 720 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNILVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F + D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQLLDSEDQLRLLK 124 >gi|157163878|ref|YP_001466192.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter concisus 13826] gi|112801470|gb|EAT98814.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter concisus 13826] Length = 939 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 17/157 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + L+L + + ++ LT TK AA EM R++ + E Sbjct: 7 LKASAGSGKTFALSVRYIALVLRGENINEIVALTFTKKAANEMKERIIATFLDLQNKKGE 66 Query: 96 I--LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + + A++ Q + + D L L++ LK+ T AF I+++F I Sbjct: 67 LEAVCAQLNISQDEAIKRRD-----ERLGVFLQSE--LKIYTFDAFFSGILKKFSQNLGI 119 Query: 154 TSHFAIADEEQS---KKLIEEAKK-----STLASIML 182 +++ D Q KK ++EA K S LA +M+ Sbjct: 120 NPDYSVQDSLQDLAWKKFVKEASKDKKLLSELALMMI 156 >gi|85060320|ref|YP_456022.1| DNA-dependent helicase II [Sodalis glossinidius str. 'morsitans'] gi|84780840|dbj|BAE75617.1| DNA helicase II [Sodalis glossinidius str. 'morsitans'] Length = 720 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ ++ ++ + E ++A P + V A AGSGKT +LV R+ LL + N P +++ +T Sbjct: 4 SDLLNSLNDKQREAVVA--PRGNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSVMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ HL+ T + G Sbjct: 62 FTNKAAAEMRHRI-----------------------------------EHLVGT---SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ + T H +++ +AN+ F I D E +L++ Sbjct: 84 GMWIGTFHGLAHRLLRAHHQDANLPQDFQILDSEDQLRLLK 124 >gi|297516694|ref|ZP_06935080.1| DNA-dependent helicase II [Escherichia coli OP50] Length = 695 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 2 VLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT------ 55 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + GG+ V T H +++ ++AN+ Sbjct: 56 --------------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLP 83 Query: 155 SHFAIADEEQSKKLIE 170 F I D E +L++ Sbjct: 84 QDFQILDSEDQLRLLK 99 >gi|254931621|ref|ZP_05264980.1| ATP-dependent nuclease [Listeria monocytogenes HPB2262] gi|293583174|gb|EFF95206.1| ATP-dependent nuclease [Listeria monocytogenes HPB2262] Length = 1235 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 30/166 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV R++ L+ AN + LL +T T A+AAEM R+ Sbjct: 31 VAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASAAEMKFRI---------- 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + + + P+ + + + LL + T+H+FC I++++ +A+ Sbjct: 81 -----GKGLEEALAQNPDSTHLKRQVALL-------NYASISTLHSFCLEIIRKYYFDAD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE 197 I +F + + +S + +E ++ L ++NNE F+ ++E Sbjct: 129 IDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNE----PFFHLVE 170 >gi|254825170|ref|ZP_05230171.1| ATP-dependent nuclease [Listeria monocytogenes FSL J1-194] gi|255519745|ref|ZP_05386982.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL J1-175] gi|293594413|gb|EFG02174.1| ATP-dependent nuclease [Listeria monocytogenes FSL J1-194] Length = 1235 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 30/166 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV R++ L+ AN + LL +T T A+AAEM R+ Sbjct: 31 VAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASAAEMKFRI---------- 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + + + P+ + + + LL + T+H+FC I++++ +A+ Sbjct: 81 -----GKGLEEALAQNPDSTHLKRQVALL-------NYASISTLHSFCLEIIRKYYFDAD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE 197 I +F + + +S + +E ++ L ++NNE F+ ++E Sbjct: 129 IDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNE----PFFHLVE 170 >gi|269798726|ref|YP_003312626.1| recombination helicase AddA [Veillonella parvula DSM 2008] gi|269095355|gb|ACZ25346.1| recombination helicase AddA [Veillonella parvula DSM 2008] Length = 1288 Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 27/182 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++ L +P L+ +T TKAAA EMS R+ L Sbjct: 28 VAAAAGSGKTAVLVERIITRLKDMDNPLSVQELMVVTFTKAAAQEMSARI------GLAL 81 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + + S E +Q + + ++ + H + T+H+FC+ +++ + + + Sbjct: 82 AKAMESTEDAAMQERLERQLNLLPSAH-------------ISTLHSFCQWVIRSYFYKLD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDI 211 I I +E + L +E LA ++ + EE YE+ + S+D+ L + I Sbjct: 129 INPTARIGNEAEMALLQQE----VLADLLTKSYEEGLYNIYELADFFSDDKSDAGLTAKI 184 Query: 212 IS 213 +S Sbjct: 185 MS 186 >gi|223042879|ref|ZP_03612927.1| recombination helicase AddA [Staphylococcus capitis SK14] gi|222443733|gb|EEE49830.1| recombination helicase AddA [Staphylococcus capitis SK14] Length = 1218 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 41/198 (20%) Query: 32 RSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII--TA 88 + V+A AGSGKT +LV+R++ R+L N LL +T T +A EM HRV + I + Sbjct: 24 QDVLVAAAAGSGKTAVLVERIIQRILRDNMDVDRLLVVTFTNLSAREMKHRVDQRIQEAS 83 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + +E L + KI ++ T+H+FC ++QQ Sbjct: 84 LAEPENEHLKNQRVKIHQA------------------------QISTLHSFCLKLIQQ-- 117 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208 H+ + D + + + EA+ L +D ++ + Y+IL+ E E L Sbjct: 118 -------HYDVLDIDPNFRTSSEAENVLLLDQTID---DVLERHYDILDSDFIELTEQLS 167 Query: 209 SDIISN--RTALKLIFFF 224 SD + R +K ++FF Sbjct: 168 SDRNDDQFRNIIKRLYFF 185 >gi|168210476|ref|ZP_02636101.1| ATP-dependent nuclease, subunit A [Clostridium perfringens B str. ATCC 3626] gi|170711446|gb|EDT23628.1| ATP-dependent nuclease, subunit A [Clostridium perfringens B str. ATCC 3626] Length = 1271 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 36/198 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R+++++ +P LL +T T AAA+EM R+ Sbjct: 22 VAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAASEMRERI---------- 71 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151 I+K K P+ + + LL + T+H+FC E I F L Sbjct: 72 -----GDAISKALEKDPSSEVLQRQLALL-------NRASITTMHSFCLEVIKNNFHL-I 118 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 ++ F I D+ + E K+ LA + D + + F +++E + ++ I Sbjct: 119 DLDPGFRIGDQTEC----ELIKQDILADLFEDMYAKDDECFKDLVEAYGGSKSDDNLNSI 174 Query: 212 ISNRTALKLIFFFFSYLW 229 I LK F S W Sbjct: 175 I-----LKFYNFIMSGPW 187 >gi|110802763|ref|YP_697370.1| recombination helicase AddA [Clostridium perfringens SM101] gi|123342114|sp|Q0SWW4|ADDA_CLOPS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|110683264|gb|ABG86634.1| recombination helicase AddA [Clostridium perfringens SM101] Length = 1270 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 36/198 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R+++++ +P LL +T T AAA+EM R+ Sbjct: 22 VAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAASEMRERI---------- 71 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151 I+K K P+ + + LL + T+H+FC E I F L Sbjct: 72 -----GDAISKALEKDPSSEVLQRQLALL-------NRASITTMHSFCLEVIKNNFHL-I 118 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 ++ F I D+ + E K+ LA + D + + F +++E + ++ I Sbjct: 119 DLDPGFRIGDQTEC----ELIKQDILADLFEDMYAKDDECFKDLVEAYGGSKSDDNLNSI 174 Query: 212 ISNRTALKLIFFFFSYLW 229 I LK F S W Sbjct: 175 I-----LKFYNFIMSGPW 187 >gi|313894359|ref|ZP_07827924.1| ATP-dependent nuclease subunit A [Veillonella sp. oral taxon 158 str. F0412] gi|313441183|gb|EFR59610.1| ATP-dependent nuclease subunit A [Veillonella sp. oral taxon 158 str. F0412] Length = 1304 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 43/211 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++ L +P L+ +T TKAAA EMS R+ L Sbjct: 28 VAAAAGSGKTAVLVERIITRLKDIDNPLSVQELMVVTFTKAAAQEMSARI------GLAL 81 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + + S E +Q + + ++ + H + T+H+FC+ +++ + + + Sbjct: 82 AKAMESTEDAAMQERLERQLNLLPSAH-------------ISTLHSFCQWVIRSYFYKLD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212 I I +E + L +E LA +++ + EE Y I E+++ SD Sbjct: 129 INPTARIGNEAEMALLQQE----VLADLLIKSYEE---GLYNIYELAD------FFSDDK 175 Query: 213 SNRTALKLIFFFFSYL--------WRRKIIE 235 S+ I ++Y W RK +E Sbjct: 176 SDAGLTAKIMLLYNYAMSLANPDGWLRKALE 206 >gi|46908500|ref|YP_014889.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 4b F2365] gi|81565413|sp|Q71X99|ADDA_LISMF RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|46881772|gb|AAT05066.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes serotype 4b str. F2365] Length = 1235 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 30/166 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV R++ L+ AN + LL +T T A+AAEM R+ Sbjct: 31 VAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASAAEMKFRI---------- 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + + + P+ + + + LL + T+H+FC I++++ +A+ Sbjct: 81 -----GKGLEEALAQNPDSTHLKRQVALL-------NYASISTLHSFCLEIIRKYYFDAD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE 197 I +F + + +S + +E ++ L ++NNE F+ ++E Sbjct: 129 IDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNE----PFFHLVE 170 >gi|46447235|ref|YP_008600.1| ATP-dependent DNA helicase, mutU [Candidatus Protochlamydia amoebophila UWE25] gi|46400876|emb|CAF24325.1| probable ATP-dependent DNA helicase, mutU [Candidatus Protochlamydia amoebophila UWE25] Length = 668 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 38/133 (28%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT +L R+ L+ N P +L LT T AAAEM HR+ + D Sbjct: 27 AGAGSGKTRVLTMRMAYLIRYLNVSPRAILGLTFTNKAAAEMRHRLANFV-------DSK 79 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 L+ ++T + T H FC I++Q + T+ Sbjct: 80 LAKQVT------------------------------LCTFHGFCMQILRQDIAKLGYTTK 109 Query: 157 FAIADEEQSKKLI 169 F++ DE+ ++LI Sbjct: 110 FSLYDEQDVQRLI 122 >gi|47092374|ref|ZP_00230164.1| UvrD/REP helicase domain protein [Listeria monocytogenes str. 4b H7858] gi|47019151|gb|EAL09894.1| UvrD/REP helicase domain protein [Listeria monocytogenes str. 4b H7858] Length = 1106 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 30/166 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV R++ L+ AN + LL +T T A+AAEM R+ Sbjct: 31 VAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASAAEMKFRI---------- 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + + + P+ + + + LL + T+H+FC I++++ +A+ Sbjct: 81 -----GKGLEEALAQNPDSTHLKRQVALL-------NYASISTLHSFCLEIIRKYYFDAD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE 197 I +F + + +S + +E ++ L ++NNE F+ ++E Sbjct: 129 IDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNE----PFFHLVE 170 >gi|282849710|ref|ZP_06259094.1| ATP-dependent nuclease subunit A [Veillonella parvula ATCC 17745] gi|282580647|gb|EFB86046.1| ATP-dependent nuclease subunit A [Veillonella parvula ATCC 17745] Length = 1251 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 29/183 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV-LEIITAWSH 91 V+A AGSGKT +LV+R++ L +P L+ +T TKAAA EMS R+ L + A Sbjct: 28 VAAAAGSGKTAVLVERIITRLKDMDNPLSVQELMVVTFTKAAAQEMSARIGLALAKAMES 87 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 D L A + + P+ + T+H+FC+ +++ + + Sbjct: 88 TDDAALQARLERQLNLLPSA--------------------HISTLHSFCQWVIRSYFYKL 127 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISD 210 +I I +E + L +E LA ++ + EE YE+ + S+D+ L + Sbjct: 128 DINPTARIGNEAEMALLQQE----VLADLLTKSYEEGLYNIYELADFFSDDKSDAGLTAK 183 Query: 211 IIS 213 I+S Sbjct: 184 IMS 186 >gi|254853388|ref|ZP_05242736.1| ATP-dependent nuclease [Listeria monocytogenes FSL R2-503] gi|300763922|ref|ZP_07073918.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL N1-017] gi|258606756|gb|EEW19364.1| ATP-dependent nuclease [Listeria monocytogenes FSL R2-503] gi|300515263|gb|EFK42314.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL N1-017] Length = 1234 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 81/166 (48%), Gaps = 30/166 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV R++ L+ AN + LL +T T A+AAEM R+ Sbjct: 31 VAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASAAEMKFRI---------- 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + + + P+ + + + LL + T+H+FC I++++ +A+ Sbjct: 81 -----GKGLEEALAQNPDSTHLKRQVALL-------NYASISTLHSFCLEIIRKYYFDAD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE 197 I +F + + +S + +E ++ L ++NNE F+ ++E Sbjct: 129 IDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNE----PFFHLVE 170 >gi|329894920|ref|ZP_08270719.1| UvrD/REP helicase family protein [gamma proteobacterium IMCC3088] gi|328922649|gb|EGG29984.1| UvrD/REP helicase family protein [gamma proteobacterium IMCC3088] Length = 1097 Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 48/128 (37%), Positives = 70/128 (54%), Gaps = 4/128 (3%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DPT S V A AGSGKT +LVQR+L LL +HP ++ +T T+ AAAEM R+ E+ Sbjct: 10 AIDPTASCCVVAPAGSGKTSLLVQRMLALLARVSHPEQIVAITFTRKAAAEMRARMAEVF 69 Query: 87 T-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 A E+ E ++ K S+ S+ L LE L+ TI +FC ++++ Sbjct: 70 ELAQVKQLSEVPEYERVSLELAKHALSNASERGWSLPEQLER---LQFMTIDSFCASLVR 126 Query: 146 QFPLEANI 153 Q PL + + Sbjct: 127 QMPLASRM 134 >gi|168217733|ref|ZP_02643358.1| ATP-dependent nuclease, subunit A [Clostridium perfringens NCTC 8239] gi|182380203|gb|EDT77682.1| ATP-dependent nuclease, subunit A [Clostridium perfringens NCTC 8239] Length = 1271 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 36/198 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R+++++ +P LL +T T AAA+EM R+ Sbjct: 22 VAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAASEMRERI---------- 71 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151 I+K K P+ + + LL + T+H+FC E I F L Sbjct: 72 -----GDAISKALEKDPSSEVLQRQLALL-------NRASITTMHSFCLEVIKNNFHL-I 118 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 ++ F I D+ + E K+ LA + D + + F +++E + ++ I Sbjct: 119 DLDPGFRIGDQTEC----ELIKQDILADLFEDMYAKDDECFKDLVEAYGGSKSDDNLNSI 174 Query: 212 ISNRTALKLIFFFFSYLW 229 I LK F S W Sbjct: 175 I-----LKFYNFIMSGPW 187 >gi|313115007|ref|ZP_07800500.1| putative ATP-dependent nuclease subunit A [Faecalibacterium cf. prausnitzii KLE1255] gi|310622698|gb|EFQ06160.1| putative ATP-dependent nuclease subunit A [Faecalibacterium cf. prausnitzii KLE1255] Length = 1240 Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 25/167 (14%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 T +++ D + VSA AGSGKT +L +R +RL+ HP LL +T T AAAA Sbjct: 7 TPAQRAAIEDRGGALLVSAAAGSGKTAVLTERAVRLITDPDHPVDADKLLIVTFTNAAAA 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R+ + ++ ++P+ + + + R LL P + TI Sbjct: 67 ELRARI---------------GQALLRLSQQQPHNTSLRRQRMLL---QRAP----ICTI 104 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 AFC ++ + +I FA AD + L A TL + D Sbjct: 105 DAFCLDLLHKHFQALDIPPDFAPADPGSVEVLRASALAETLENAYRD 151 >gi|322417957|ref|YP_004197180.1| exodeoxyribonuclease V subunit beta [Geobacter sp. M18] gi|320124344|gb|ADW11904.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. M18] Length = 1116 Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 2/117 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + LRL+L S +L +T T+AA E+ RV + + + Sbjct: 17 IEASAGTGKTFTIAGVYLRLVLEEELDVSRILVVTFTEAATKELKERVRKKLKE-AESGF 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 E ++E I G + SD KAR LL + + + + TIH FC+ ++Q P E+ Sbjct: 76 EAGASEDFLIAGLLQSSSDHHKARRLLASAVRSFDEAAIFTIHGFCQRMLQDNPFES 132 >gi|88811691|ref|ZP_01126945.1| possible ATP-dependent exodeoxyribonuclease subunit A [Nitrococcus mobilis Nb-231] gi|88791082|gb|EAR22195.1| possible ATP-dependent exodeoxyribonuclease subunit A [Nitrococcus mobilis Nb-231] Length = 1117 Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 13/152 (8%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 SE ID + + L A D T V A AGSGKT ++ R++ L P + +T Sbjct: 2 SELID--HRQRLRALTAIDST--LLVEAGAGSGKTALMAGRIVYSLAQGIEPGRIAAITF 57 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK-SDMSKARHLLITILETPG 129 T+ AA ++ +I L + ++Q P SD + R L T E Sbjct: 58 TELAAGQL------LIRIRGFLERALRGETPVELQAAFPKGLSDAERIR--LTTARERLA 109 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIAD 161 L TIH FC+ +++ +P+EA+I AI D Sbjct: 110 ELTATTIHGFCQQLIRPYPVEADIDPGAAIMD 141 >gi|288553536|ref|YP_003425471.1| ATP-dependent nuclease subunit A [Bacillus pseudofirmus OF4] gi|288544696|gb|ADC48579.1| ATP-dependent nuclease subunit A [Bacillus pseudofirmus OF4] Length = 1135 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 35/196 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PST--------LLCLTHTKAAAAEMSHRVLEII 86 ++A AGSGKT +L +R++ LL H PS+ + +T T+ AA EM RV + I Sbjct: 20 IAAGAGSGKTRVLTERIMYLLEKAFHEPSSSIAATIEEVAAITFTEKAAREMKDRVRKRI 79 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + E+L+ + + K + +A + T H+FC+ ++ Q Sbjct: 80 S-----EKEVLAQTEAEAAFWREQKELVERAH--------------ISTFHSFCQQLLGQ 120 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE----ISNDE 202 + + A + I DE ++K+L + K L + + K F+ + IS E Sbjct: 121 YAMAAKLPPKIRIIDEVEAKQLKRDVLKKHLQDVEFTAS---AKEFFSYMSKDQFISTME 177 Query: 203 DIETLISDIISNRTAL 218 DI IS+++ A+ Sbjct: 178 DIHASISELVIGEDAV 193 >gi|237738470|ref|ZP_04568951.1| ATP-dependent nuclease subunit A [Fusobacterium mortiferum ATCC 9817] gi|229420350|gb|EEO35397.1| ATP-dependent nuclease subunit A [Fusobacterium mortiferum ATCC 9817] Length = 1017 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 97/198 (48%), Gaps = 26/198 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AG+GKT+ L + L+ +L +T TK A AE+ R+L+ + E Sbjct: 7 LKASAGTGKTYRLSLEYIASLMVGIDFKDILVMTFTKKATAEIKERILKFLK-------E 59 Query: 96 ILSAEITKIQGKKPNKS--------DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 I +E +++ +K ++ ++SK + + I+E LK+ TI +F I ++ Sbjct: 60 ICESEEKRVEIEKNLQNIYGDVFSFEISKVKKIYKNIVENKDKLKIYTIDSFTNTIFKKA 119 Query: 148 PLEANITSHFAIADEEQSKK-LIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 + I DEE+++K LI +K + +N E+ F LE ++++D++ Sbjct: 120 IAPYLKIYSYEIVDEEENRKILIRTFEK------LFENREDF-NLFKSFLEDNSEKDMDR 172 Query: 207 ---LISDIISNRTALKLI 221 LI +II+ R + L+ Sbjct: 173 YVELIRNIINQRWKMILL 190 >gi|189502292|ref|YP_001958009.1| hypothetical protein Aasi_0914 [Candidatus Amoebophilus asiaticus 5a2] gi|189497733|gb|ACE06280.1| hypothetical protein Aasi_0914 [Candidatus Amoebophilus asiaticus 5a2] Length = 913 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 2/127 (1%) Query: 40 AGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILS 98 AGSGKT++LV+ L+L L A + +L +T T A EM R+L + + + +L+ Sbjct: 11 AGSGKTYVLVKAYLQLALRAPLYFQRILAVTFTNRATQEMKQRILNSLHDIAQGKESLLT 70 Query: 99 AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFA 158 E+ + G +K +A+ +L +L V TI +F ++I++ F E I F Sbjct: 71 QELNQANGWD-SKELQKRAQAVLSKVLHNYDHFSVGTIDSFLQSIVRNFSKELGIQHGFT 129 Query: 159 IADEEQS 165 I ++++ Sbjct: 130 IEMDQET 136 >gi|313904430|ref|ZP_07837807.1| recombination helicase AddA [Eubacterium cellulosolvens 6] gi|313470766|gb|EFR66091.1| recombination helicase AddA [Eubacterium cellulosolvens 6] Length = 1236 Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 87/206 (42%), Gaps = 43/206 (20%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 T ++ + S VSA AGSGKT +LV+R+++L++ P LL +T T+AAA Sbjct: 6 TDEQERVISQRNSDLLVSAAAGSGKTAVLVERIMQLVMDPVSPMDIDQLLVVTFTRAAAG 65 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ A+ + + P + + LL L + TI Sbjct: 66 EMKERI---------------GAKFAALLEEDPENDHLQQQGVLLHHAL-------ITTI 103 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN--NEELKKAFYE 194 FC ++Q + + + IA EE + S L +LD+ EE +A E Sbjct: 104 DGFCTHVIQNYFQRIGLDPGYRIA---------EEGELSLLRGQVLDDLLEEEYAEASPE 154 Query: 195 ILEISN-------DEDIETLISDIIS 213 L ++ D +E +I DI S Sbjct: 155 FLRLAQAYAPGKTDRALEEMILDIYS 180 >gi|188586470|ref|YP_001918015.1| recombination helicase AddA [Natranaerobius thermophilus JW/NM-WN-LF] gi|251764535|sp|B2A610|ADDA_NATTJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|179351157|gb|ACB85427.1| recombination helicase AddA [Natranaerobius thermophilus JW/NM-WN-LF] Length = 1282 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 27/131 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP----STLLCLTHTKAAAAEMSHRVLEIITAWSH 91 VSA AG+GKT +LVQR++ L+ + H + LL +T T+ AA EM R+ Sbjct: 29 VSAGAGAGKTAVLVQRIISKLI-DPHDDLTVNGLLVVTFTEKAANEMRDRI--------- 78 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 + E+ K + P + K +LL + T+H+FC I++ + Sbjct: 79 ------ARELKKALSQDPENDHLKKQLYLL-------NKANISTLHSFCLEILRHYFYYL 125 Query: 152 NITSHFAIADE 162 +I F++A E Sbjct: 126 DIDPAFSVASE 136 >gi|237807125|ref|YP_002891565.1| DNA helicase II [Tolumonas auensis DSM 9187] gi|237499386|gb|ACQ91979.1| DNA helicase II [Tolumonas auensis DSM 9187] Length = 729 Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 39/176 (22%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P ++ V A AGSGKT +LV R+ LL + P ++L +T T AAAEM R+ ++ Sbjct: 21 PLQNMLVLAGAGSGKTRVLVHRIAWLLQIEQVSPHSILAVTFTNKAAAEMRGRIERLL-- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + + R GG+ + T H +++ P Sbjct: 79 ----------------------GNSLGFGR----------GGMWIGTFHGLAHRLLRAHP 106 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204 L+AN+ F I D + +L+ K L ++ LD + + +A + DE + Sbjct: 107 LDANLPEDFQIIDSDDQLRLL----KRILRNLNLDEKQWVPRAVAGYINSKKDEGL 158 >gi|124005926|ref|ZP_01690764.1| UvrD/REP helicase domain protein, putative [Microscilla marina ATCC 23134] gi|123988609|gb|EAY28250.1| UvrD/REP helicase domain protein, putative [Microscilla marina ATCC 23134] Length = 949 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 17/165 (10%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL- 92 S++AGSGKT+ L + L+L L P +L +T T AA EM R++ + ++ Sbjct: 7 SSSAGSGKTYTLTREYLKLALQGDQPHYFKYILAITFTNDAANEMKARIVNALQGFAQPD 66 Query: 93 ---------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 SD++L I + G P K ++A+ + + I+ V TI F I Sbjct: 67 TLDDKARKGSDQLLFG-IAEELGVAPEKL-RTRAQKVFVKIIYNYSDFAVSTIDRFVNKI 124 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 F E +I ++ + + + KL+E A LA + + E L Sbjct: 125 TTAFTQELDIPYNYDV--DLDTDKLLETAIDRVLAKVGRETKENL 167 >gi|33863357|ref|NP_894917.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313] gi|33640806|emb|CAE21261.1| similar to UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313] Length = 1274 Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 16/148 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV-------LEIIT 87 + A+AG+GKT L VLRLL H S LL +T T+AAAAE+ R+ LE + Sbjct: 26 LEASAGTGKTFALAHLVLRLLTEGGHQISELLVVTFTEAAAAELRSRIGQRLEHALEGLE 85 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHL----LITILETPGGLKVQTIHAFCEAI 143 A H + + + K Q + N D+S+ RH L+ LE+ + TIH FC Sbjct: 86 ALDHGATDQPPDLVLK-QWLQCNGHDLSQ-RHQWISSLLVALESLDLADITTIHGFCRRT 143 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEE 171 +++ LE+ + D Q +L++E Sbjct: 144 LRRQALESGAVMDPRLDDSGQ--QLVQE 169 >gi|297543796|ref|YP_003676098.1| recombination helicase AddA [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841571|gb|ADH60087.1| recombination helicase AddA [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 1230 Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 25/149 (16%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 T +QL + + V+A AGSGKT +LV+R++RL+ +P LL +T T AAA+ Sbjct: 6 THEQQLAINTRGNNLLVAAGAGSGKTAVLVERIIRLITDKENPVDIDRLLVVTFTNAAAS 65 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ + A I+K+ + P +S LL + TI Sbjct: 66 EMRERIAD--------------ALISKLD-QNPEDRRLSNQLTLL-------NKATITTI 103 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQS 165 H+FC +++ ++ +F I D+ ++ Sbjct: 104 HSFCLEVVRNNFFLVDLDPNFRIGDDTET 132 >gi|323440877|gb|EGA98585.1| ATP-dependent nuclease subunit A [Staphylococcus aureus O11] Length = 1217 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|182624633|ref|ZP_02952415.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens D str. JGS1721] gi|177910237|gb|EDT72625.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens D str. JGS1721] Length = 876 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 49/211 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 +I+ + +Q + ++ + + A+AG+GKT+ L +RV ++ N+ PS +LC+T T A Sbjct: 7 MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 EMS RV++I+ + + ++ Sbjct: 67 CKEMSDRVMKIVGGEAK--------------------------------------DITIR 88 Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190 T H+FC +++ + +I S F I DE+ +++I + S ++ N +++K Sbjct: 89 TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLNYYYATSNLMATNMQIQKVID 148 Query: 191 ------AFYEILEISNDEDIETLISDIISNR 215 A E LE ++ +T+I +I R Sbjct: 149 FIKVERARIETLEDRVLDEYKTVIDEIFKFR 179 >gi|305665916|ref|YP_003862203.1| ATP-dependent helicase [Maribacter sp. HTCC2170] gi|88710691|gb|EAR02923.1| ATP-dependent helicase [Maribacter sp. HTCC2170] Length = 1037 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 6/129 (4%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 +A+AGSGKTH L + L+++L++ + +L +T T A EM R+L + +S+ +DE Sbjct: 10 NASAGSGKTHTLTKEYLKIVLSSPNSYGQILAITFTNKAVNEMKERILSSLFEFSN-TDE 68 Query: 96 ILSAEI--TKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 + +A + + + + + D KA+ L IL G + TI F I++ F + Sbjct: 69 VGNASVLFSDLMSELDLEVDALRKKAKRTLKDILHNYGFFDISTIDKFTHRIIRTFAKDL 128 Query: 152 NITSHFAIA 160 I +F + Sbjct: 129 KIAQNFEVV 137 >gi|298694207|gb|ADI97429.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus ED133] Length = 1217 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|303257893|ref|ZP_07343902.1| DNA helicase II [Burkholderiales bacterium 1_1_47] gi|302859236|gb|EFL82318.1| DNA helicase II [Burkholderiales bacterium 1_1_47] Length = 787 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 40/139 (28%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 Q + ++P +SA + A AGSGKT +L R+ LL N AHPS +L +T T AA EM R+ Sbjct: 20 QAVTAEP-KSALILAGAGSGKTRVLTSRIAYLLQQNMAHPSEILAVTFTNKAAKEMLARL 78 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 +I P + V T H C Sbjct: 79 QNMIPI--------------------------------------NPRAMWVGTFHGLCNR 100 Query: 143 IMQQFPLEANITSHFAIAD 161 +++ EA + S FAI D Sbjct: 101 LLRLHHQEAGLPSTFAILD 119 >gi|110799207|ref|YP_694883.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens ATCC 13124] gi|110673854|gb|ABG82841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens ATCC 13124] Length = 870 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 49/211 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 +I+ + +Q + ++ + + A+AG+GKT+ L +RV ++ N+ PS +LC+T T A Sbjct: 1 MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 EMS RV++I+ + + ++ Sbjct: 61 CKEMSDRVMKIVGGEAK--------------------------------------DITIR 82 Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190 T H+FC +++ + +I S F I DE+ +++I + S ++ N +++K Sbjct: 83 TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQKVID 142 Query: 191 ------AFYEILEISNDEDIETLISDIISNR 215 A E LE ++ +T+I +I R Sbjct: 143 FIKVERARIETLEDRVLDEYKTVIDEIFKFR 173 >gi|153855193|ref|ZP_01996377.1| hypothetical protein DORLON_02391 [Dorea longicatena DSM 13814] gi|149752362|gb|EDM62293.1| hypothetical protein DORLON_02391 [Dorea longicatena DSM 13814] Length = 1221 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 33/185 (17%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIIT 87 R+ VSA AGSGKT +LV+R++ +L + P LL +T T+AAA+EM R+ Sbjct: 17 NRNILVSAAAGSGKTAVLVERIITMLTKDDPPMDVDRLLIVTFTEAAASEMKERI----- 71 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 I K + P+ + + L+ ++ TIH+FC ++++ Sbjct: 72 ----------RLAIEKKLMEYPDNEHLKQQATLI-------HNAQITTIHSFCLSVIRDH 114 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDED 203 +I F I +E + K L + L ++ + +E K F + ND+ Sbjct: 115 FHAIDIDPGFRIGEEGELKLL----RHDVLEDMLEEKYQEGSKRFLDFTAAYSTGRNDKK 170 Query: 204 IETLI 208 IE LI Sbjct: 171 IEDLI 175 >gi|116334819|ref|YP_796346.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus brevis ATCC 367] gi|122268502|sp|Q03NA7|ADDA_LACBA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116100166|gb|ABJ65315.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactobacillus brevis ATCC 367] Length = 1262 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 18/151 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT +LVQRV+ L +L +T TKAAAAEM R+ Sbjct: 24 VSASAGSGKTRVLVQRVIERLKTGVGIDQILIVTFTKAAAAEMRERI-----------QT 72 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 L E+ QG D ++ + L + + P + T+ AFC ++Q++ ++ Sbjct: 73 ALRQELAVSQG------DSAQQQFYLRQLNQLPVA-DISTLDAFCLRLLQRYYYVIDLDP 125 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 F + +E L+ + + L + N++ Sbjct: 126 VFRLLADETENGLLRDEVWADLREDLYANDD 156 >gi|168214037|ref|ZP_02639662.1| ATP-dependent nuclease, subunit A [Clostridium perfringens CPE str. F4969] gi|170714486|gb|EDT26668.1| ATP-dependent nuclease, subunit A [Clostridium perfringens CPE str. F4969] Length = 1271 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 31/166 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R+++++ +P LL +T T AAA+EM R+ Sbjct: 22 VAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAASEMRERI---------- 71 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151 I+K K P+ + + LL + T+H+FC E I F L Sbjct: 72 -----GDAISKALEKDPSSEVLQRQLALL-------NRASITTMHSFCLEVIKNNFHL-I 118 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 ++ F I D+ + E K+ LA + D + + F +++E Sbjct: 119 DLDPGFRIGDQTEC----ELIKQDILADLFEDMYAKDDECFKDLVE 160 >gi|87161998|ref|YP_493570.1| exonuclease RexA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161509167|ref|YP_001574826.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|262049318|ref|ZP_06022192.1| hypothetical protein SAD30_1616 [Staphylococcus aureus D30] gi|284023894|ref|ZP_06378292.1| exonuclease RexA [Staphylococcus aureus subsp. aureus 132] gi|294847955|ref|ZP_06788702.1| recombination helicase AddA [Staphylococcus aureus A9754] gi|123486587|sp|Q2FIA8|ADDA_STAA3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|251764539|sp|A8Z073|ADDA_STAAT RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|87127972|gb|ABD22486.1| exonuclease RexA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160367976|gb|ABX28947.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|259162550|gb|EEW47118.1| hypothetical protein SAD30_1616 [Staphylococcus aureus D30] gi|294824755|gb|EFG41177.1| recombination helicase AddA [Staphylococcus aureus A9754] gi|315197320|gb|EFU27658.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp. aureus CGS01] gi|320143273|gb|EFW35063.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus MRSA177] Length = 1217 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|57651659|ref|YP_185840.1| exonuclease RexA [Staphylococcus aureus subsp. aureus COL] gi|88194662|ref|YP_499458.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221050|ref|YP_001331872.1| exonuclease RexA [Staphylococcus aureus subsp. aureus str. Newman] gi|221142113|ref|ZP_03566606.1| exonuclease RexA [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452081|ref|ZP_05700097.1| exonuclease RexA [Staphylococcus aureus A5948] gi|262052141|ref|ZP_06024349.1| hypothetical protein SA930_1464 [Staphylococcus aureus 930918-3] gi|282922247|ref|ZP_06329942.1| recombination helicase AddA [Staphylococcus aureus A9765] gi|304381479|ref|ZP_07364129.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694859|sp|Q5HHB7|ADDA_STAAC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|122539894|sp|Q2FZT5|ADDA_STAA8 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|251764538|sp|A6QFH8|ADDA_STAAE RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|57285845|gb|AAW37939.1| exonuclease RexA [Staphylococcus aureus subsp. aureus COL] gi|87202220|gb|ABD30030.1| ATP-dependent nuclease subunit A, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373850|dbj|BAF67110.1| exonuclease RexA [Staphylococcus aureus subsp. aureus str. Newman] gi|257860296|gb|EEV83128.1| exonuclease RexA [Staphylococcus aureus A5948] gi|259159960|gb|EEW44996.1| hypothetical protein SA930_1464 [Staphylococcus aureus 930918-3] gi|269940469|emb|CBI48846.1| putative helicase [Staphylococcus aureus subsp. aureus TW20] gi|282593537|gb|EFB98531.1| recombination helicase AddA [Staphylococcus aureus A9765] gi|302750795|gb|ADL64972.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339842|gb|EFM05786.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|329313635|gb|AEB88048.1| ATP-dependent helicase/nuclease subunit A [Staphylococcus aureus subsp. aureus T0131] gi|329726247|gb|EGG62717.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus 21189] Length = 1217 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|18309405|ref|NP_561339.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13] gi|18144081|dbj|BAB80129.1| probable ATP-dependent DNA helicase [Clostridium perfringens str. 13] Length = 870 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 93/211 (44%), Gaps = 49/211 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 +I+ + +Q + ++ + + A+AG+GKT+ L +RV ++ N+ PS +LC+T T A Sbjct: 1 MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 EMS RV++I+ + + ++ Sbjct: 61 CKEMSDRVMKIVGGEAK--------------------------------------DITIR 82 Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190 T H+FC +++ + +I S F I DE+ +++I + S ++ N +++K Sbjct: 83 TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQKVID 142 Query: 191 ------AFYEILEISNDEDIETLISDIISNR 215 A E LE ++ +T+I +I R Sbjct: 143 FIKVERARIETLEDRVLDEYKTVIDEIFKFR 173 >gi|15923957|ref|NP_371491.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus Mu50] gi|15926556|ref|NP_374089.1| hypothetical protein SA0828 [Staphylococcus aureus subsp. aureus N315] gi|148267401|ref|YP_001246344.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus JH9] gi|150393454|ref|YP_001316129.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus JH1] gi|156979293|ref|YP_001441552.1| hypothetical protein SAHV_0962 [Staphylococcus aureus subsp. aureus Mu3] gi|253316128|ref|ZP_04839341.1| hypothetical protein SauraC_08287 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005757|ref|ZP_05144358.2| hypothetical protein SauraM_04790 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795298|ref|ZP_05644277.1| recombination helicase AddA [Staphylococcus aureus A9781] gi|258406947|ref|ZP_05680100.1| recombination helicase AddA [Staphylococcus aureus A9763] gi|258421915|ref|ZP_05684836.1| recombination helicase AddA [Staphylococcus aureus A9719] gi|258435312|ref|ZP_05689051.1| recombination helicase AddA [Staphylococcus aureus A9299] gi|258441524|ref|ZP_05690884.1| ATP-dependent nuclease subunit A [Staphylococcus aureus A8115] gi|258447223|ref|ZP_05695372.1| recombination helicase AddA [Staphylococcus aureus A6300] gi|258449983|ref|ZP_05698081.1| recombination helicase AddA [Staphylococcus aureus A6224] gi|269202582|ref|YP_003281851.1| exonuclease RexA [Staphylococcus aureus subsp. aureus ED98] gi|282893994|ref|ZP_06302225.1| recombination helicase AddA [Staphylococcus aureus A8117] gi|282927190|ref|ZP_06334812.1| recombination helicase AddA [Staphylococcus aureus A10102] gi|295405773|ref|ZP_06815582.1| recombination helicase AddA [Staphylococcus aureus A8819] gi|296276179|ref|ZP_06858686.1| exonuclease RexA [Staphylococcus aureus subsp. aureus MR1] gi|297245364|ref|ZP_06929235.1| recombination helicase AddA [Staphylococcus aureus A8796] gi|81705953|sp|Q7A6H4|ADDA_STAAN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|81781869|sp|Q99VC3|ADDA_STAAM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|251764537|sp|A6U074|ADDA_STAA2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|251764554|sp|A5IRE5|ADDA_STAA9 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|251764555|sp|A7X0I2|ADDA_STAA1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|13700771|dbj|BAB42067.1| SA0828 [Staphylococcus aureus subsp. aureus N315] gi|14246736|dbj|BAB57129.1| similar to ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus Mu50] gi|147740470|gb|ABQ48768.1| DNA helicase/exodeoxyribonuclease V, subunit A [Staphylococcus aureus subsp. aureus JH9] gi|149945906|gb|ABR51842.1| Recombination helicase AddA [Staphylococcus aureus subsp. aureus JH1] gi|156721428|dbj|BAF77845.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257789270|gb|EEV27610.1| recombination helicase AddA [Staphylococcus aureus A9781] gi|257841486|gb|EEV65927.1| recombination helicase AddA [Staphylococcus aureus A9763] gi|257842248|gb|EEV66676.1| recombination helicase AddA [Staphylococcus aureus A9719] gi|257848973|gb|EEV72956.1| recombination helicase AddA [Staphylococcus aureus A9299] gi|257852314|gb|EEV76240.1| ATP-dependent nuclease subunit A [Staphylococcus aureus A8115] gi|257853971|gb|EEV76925.1| recombination helicase AddA [Staphylococcus aureus A6300] gi|257856903|gb|EEV79806.1| recombination helicase AddA [Staphylococcus aureus A6224] gi|262074872|gb|ACY10845.1| exonuclease RexA [Staphylococcus aureus subsp. aureus ED98] gi|282590879|gb|EFB95954.1| recombination helicase AddA [Staphylococcus aureus A10102] gi|282763480|gb|EFC03609.1| recombination helicase AddA [Staphylococcus aureus A8117] gi|285816646|gb|ADC37133.1| ATP-dependent nuclease, subunit A [Staphylococcus aureus 04-02981] gi|294969208|gb|EFG45228.1| recombination helicase AddA [Staphylococcus aureus A8819] gi|297177667|gb|EFH36917.1| recombination helicase AddA [Staphylococcus aureus A8796] gi|312829364|emb|CBX34206.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130452|gb|EFT86439.1| hypothetical protein CGSSa03_03488 [Staphylococcus aureus subsp. aureus CGS03] gi|329728233|gb|EGG64672.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus aureus subsp. aureus 21172] Length = 1217 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|148212|gb|AAA67609.1| DNA helicase II [Escherichia coli str. K-12 substr. MG1655] Length = 720 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ +++ + G Sbjct: 62 FTNKAAAEMRHRIGQLMGT--------------------------------------SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H ++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHXLAHRLLXAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|323443832|gb|EGB01444.1| ATP-dependent nuclease subunit A [Staphylococcus aureus O46] Length = 1217 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|311029443|ref|ZP_07707533.1| ATP-dependent nuclease, subunit A [Bacillus sp. m3-13] Length = 1255 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 30/185 (16%) Query: 32 RSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 R V+A AGSGKT +LV+R++ +++ + LL +T T A+AAEM HR+ E Sbjct: 27 RDILVAAAAGSGKTAVLVERMIHKIVEEHVDVDRLLVVTFTNASAAEMRHRIGE------ 80 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + K KKP + + LL + TIH+FC +++++ Sbjct: 81 ---------ALEKQLEKKPASLHLRRQLSLL-------NRASISTIHSFCLEVVRKYYYL 124 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDED---IET 206 +I F IAD + + + EE + + +E F+E+++ +ND ++ Sbjct: 125 IDIDPSFRIADTTEIQLMQEEVLEGVFEE---EYGKEDNDLFFELVDRYTNDRSDGALQN 181 Query: 207 LISDI 211 L+ D+ Sbjct: 182 LVLDL 186 >gi|302332580|gb|ADL22773.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus JKD6159] Length = 1217 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|294792591|ref|ZP_06757738.1| ATP-dependent nuclease subunit A [Veillonella sp. 6_1_27] gi|294456490|gb|EFG24853.1| ATP-dependent nuclease subunit A [Veillonella sp. 6_1_27] Length = 1251 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 88/182 (48%), Gaps = 27/182 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++ L +P L+ +T TKAAA EMS R+ + Sbjct: 28 VAAAAGSGKTAVLVERIITRLKDMYNPLSVQELMVVTFTKAAAQEMSARIGLALAKAMES 87 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 +D++ +Q + + ++ + H + T+H+FC+ +++ + + + Sbjct: 88 TDDV------ALQTRLERQLNLLPSAH-------------ISTLHSFCQWVIRSYFYKLD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDI 211 I I +E + L +E LA ++ + EE YE+ + S+D+ L + I Sbjct: 129 INPTARIGNEAEMALLQQE----VLADLLTKSYEEGLYNIYELADFFSDDKSDAGLTAKI 184 Query: 212 IS 213 +S Sbjct: 185 MS 186 >gi|283770033|ref|ZP_06342925.1| ATP-dependent helicase/nuclease subunit A [Staphylococcus aureus subsp. aureus H19] gi|283460180|gb|EFC07270.1| ATP-dependent helicase/nuclease subunit A [Staphylococcus aureus subsp. aureus H19] Length = 1217 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|282910543|ref|ZP_06318347.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus WBG10049] gi|282325935|gb|EFB56243.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus WBG10049] Length = 1217 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|258455496|ref|ZP_05703455.1| recombination helicase AddA [Staphylococcus aureus A5937] gi|257862314|gb|EEV85083.1| recombination helicase AddA [Staphylococcus aureus A5937] Length = 1217 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|146309527|ref|YP_001189992.1| DNA-dependent helicase II [Pseudomonas mendocina ymp] gi|145577728|gb|ABP87260.1| ATP-dependent DNA helicase UvrD [Pseudomonas mendocina ymp] Length = 727 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 49/163 (30%) Query: 19 QTKSEQLLAS----------DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 Q E LLAS P V A AGSGKT +LV R+ L+ A A P ++L Sbjct: 2 QNDPELLLASLNDAQVQAVAAPLGRQLVLAGAGSGKTRVLVHRIAFLIQAMGASPHSILS 61 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ Sbjct: 62 VTFTNKAAAEMRHRIEQMLG--------------------------------------HN 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 P G+ V T H +++ EA +T +F I D + ++LI+ Sbjct: 84 PAGMWVGTFHGLAHRLLRAHWQEAALTENFQILDSDDQQRLIK 126 >gi|82750584|ref|YP_416325.1| ATP-dependent nuclease subunit A [Staphylococcus aureus RF122] gi|123548876|sp|Q2YWW4|ADDA_STAAB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|82656115|emb|CAI80524.1| ATP-dependent nuclease subunit A [Staphylococcus aureus RF122] Length = 1217 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|49485743|ref|YP_042964.1| hypothetical protein SAS0837 [Staphylococcus aureus subsp. aureus MSSA476] gi|297208398|ref|ZP_06924828.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus ATCC 51811] gi|81649660|sp|Q6GAV9|ADDA_STAAS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|49244186|emb|CAG42612.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|296887137|gb|EFH26040.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 1217 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|293374973|ref|ZP_06621268.1| ATP-dependent nuclease subunit A [Turicibacter sanguinis PC909] gi|292646383|gb|EFF64398.1| ATP-dependent nuclease subunit A [Turicibacter sanguinis PC909] Length = 1198 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 23/128 (17%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 +SA AGSGKT +LV+R++ +++ + LL +T T+AAAAEM R+ S + D Sbjct: 30 ISAGAGSGKTAVLVERMIQKIIQEKLNIDELLVMTFTEAAAAEMKQRM------RSRIQD 83 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E+ K+P+ HL + L + T HAFC +++++ + Sbjct: 84 EL---------EKQPDNE------HLKVQ-LNKISQSHISTFHAFCNKLIKRYYYLLELD 127 Query: 155 SHFAIADE 162 F IAD+ Sbjct: 128 PVFKIADD 135 >gi|21282578|ref|NP_645666.1| hypothetical protein MW0849 [Staphylococcus aureus subsp. aureus MW2] gi|300912474|ref|ZP_07129917.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus TCH70] gi|81762665|sp|Q8NXE9|ADDA_STAAW RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|21204016|dbj|BAB94714.1| MW0849 [Staphylococcus aureus subsp. aureus MW2] gi|300886720|gb|EFK81922.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus TCH70] Length = 1217 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|168216491|ref|ZP_02642116.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens NCTC 8239] gi|182381517|gb|EDT78996.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens NCTC 8239] Length = 870 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 92/211 (43%), Gaps = 49/211 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 +I+ + +Q + ++ + + A+AG+GKT+ L +RV ++ N+ PS +LC+T T A Sbjct: 1 MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 EMS RV+ I+ + + ++ Sbjct: 61 CKEMSDRVMRIVGGEAK--------------------------------------DITIR 82 Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190 T H+FC +++ + +I S F I DE+ +++I + S ++ N +++K Sbjct: 83 TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREIISKLSYYYATSNLMATNMQIQKVID 142 Query: 191 ------AFYEILEISNDEDIETLISDIISNR 215 A E LE ++ +T+I +I R Sbjct: 143 FIKVERARIETLEDRVLDEYKTVIDEIFKFR 173 >gi|329733963|gb|EGG70285.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus 21193] Length = 1217 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|282905282|ref|ZP_06313139.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus Btn1260] gi|282331689|gb|EFB61201.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus Btn1260] Length = 1217 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|257425017|ref|ZP_05601444.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus 55/2053] gi|257427682|ref|ZP_05604081.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus 65-1322] gi|257430317|ref|ZP_05606700.1| exonuclease RexA [Staphylococcus aureus subsp. aureus 68-397] gi|257433014|ref|ZP_05609374.1| exonuclease RexA [Staphylococcus aureus subsp. aureus E1410] gi|257435918|ref|ZP_05611966.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus M876] gi|282913739|ref|ZP_06321528.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus subsp. aureus M899] gi|282923655|ref|ZP_06331335.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus C101] gi|293500781|ref|ZP_06666632.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus 58-424] gi|293509732|ref|ZP_06668443.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus M809] gi|293524319|ref|ZP_06671006.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus subsp. aureus M1015] gi|257272587|gb|EEV04710.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus 55/2053] gi|257275875|gb|EEV07348.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus 65-1322] gi|257279094|gb|EEV09705.1| exonuclease RexA [Staphylococcus aureus subsp. aureus 68-397] gi|257282429|gb|EEV12564.1| exonuclease RexA [Staphylococcus aureus subsp. aureus E1410] gi|257285109|gb|EEV15228.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus M876] gi|282314523|gb|EFB44913.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus C101] gi|282322771|gb|EFB53093.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus subsp. aureus M899] gi|290921282|gb|EFD98343.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus subsp. aureus M1015] gi|291095786|gb|EFE26047.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus 58-424] gi|291467829|gb|EFF10344.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus M809] Length = 1217 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|253732675|ref|ZP_04866840.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp. aureus TCH130] gi|253729286|gb|EES98015.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp. aureus TCH130] Length = 1217 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|253731575|ref|ZP_04865740.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724818|gb|EES93547.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 1217 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|282903504|ref|ZP_06311395.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus C160] gi|282908262|ref|ZP_06316093.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282918665|ref|ZP_06326402.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus C427] gi|283957705|ref|ZP_06375158.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus A017934/97] gi|295427450|ref|ZP_06820085.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus EMRSA16] gi|282317799|gb|EFB48171.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus C427] gi|282327927|gb|EFB58209.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282596459|gb|EFC01420.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus C160] gi|283791156|gb|EFC29971.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus A017934/97] gi|295128838|gb|EFG58469.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus EMRSA16] gi|312438670|gb|ADQ77741.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus TCH60] gi|315194499|gb|EFU24891.1| hypothetical protein CGSSa00_12270 [Staphylococcus aureus subsp. aureus CGS00] Length = 1217 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|297590190|ref|ZP_06948829.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus MN8] gi|297576489|gb|EFH95204.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus MN8] Length = 1217 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|49483127|ref|YP_040351.1| hypothetical protein SAR0929 [Staphylococcus aureus subsp. aureus MRSA252] gi|81651446|sp|Q6GIC1|ADDA_STAAR RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|49241256|emb|CAG39935.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] Length = 1217 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|330431031|gb|AEC16090.1| exonuclease V beta subunit [Gallibacterium anatis UMN179] Length = 1199 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 33/155 (21%) Query: 36 VSANAGSGKTHILVQRVLRLLLA---NAHPSTL-----LCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT+ +V LRLLL N P+ L L +T T+ A E+ R+ E Sbjct: 18 IEASAGTGKTYTMVTLYLRLLLQAGENNFPTPLDIEQILVVTFTRDATRELRQRIRERTQ 77 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHL-LITILETPGGLKVQ------------ 134 +W L + + +KS++ L L+ LE L +Q Sbjct: 78 SWLKLLESY---------QQNRDKSEIKDNELLALLPYLEDHLALAIQRLSFACEYIDKA 128 Query: 135 ---TIHAFCEAIMQQFPLEANITSHFAIADEEQSK 166 TIH FC+ I++Q+ ++ + F ++++ Q + Sbjct: 129 AIFTIHGFCQRILRQYAFDSGLGFKFELSEQNQEQ 163 >gi|331000444|ref|ZP_08324119.1| putative DNA helicase II [Parasutterella excrementihominis YIT 11859] gi|329571776|gb|EGG53456.1| putative DNA helicase II [Parasutterella excrementihominis YIT 11859] Length = 781 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 40/139 (28%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 Q + ++P +SA + A AGSGKT +L R+ LL N AHPS +L +T T AA EM R+ Sbjct: 14 QAVTAEP-KSALILAGAGSGKTRVLTSRIAYLLQQNMAHPSEILAVTFTNKAAKEMLARL 72 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 +I P + V T H C Sbjct: 73 QNMIPI--------------------------------------NPRAMWVGTFHGLCNR 94 Query: 143 IMQQFPLEANITSHFAIAD 161 +++ EA + S FAI D Sbjct: 95 LLRLHHQEAGLPSTFAILD 113 >gi|320141216|gb|EFW33063.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus MRSA131] Length = 1217 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|302524115|ref|ZP_07276457.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. AA4] gi|302433010|gb|EFL04826.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. AA4] Length = 804 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L +R+ LL HP ++ +T T AAAEM RV ++ Sbjct: 44 VVAGAGSGKTRVLTRRIAYLLAERGVHPGEIMAITFTNKAAAEMRERVAALV-------- 95 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 GK+ N + V T H+ C I+++ +++ Sbjct: 96 -----------GKRAN-------------------AMWVSTFHSMCVRILRREAKTLDMS 125 Query: 155 SHFAIADEEQSKKLI 169 S F+I D + +K+LI Sbjct: 126 SSFSIYDSDDTKRLI 140 >gi|153813842|ref|ZP_01966510.1| hypothetical protein RUMTOR_00048 [Ruminococcus torques ATCC 27756] gi|145848238|gb|EDK25156.1| hypothetical protein RUMTOR_00048 [Ruminococcus torques ATCC 27756] Length = 1197 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 50/195 (25%), Positives = 83/195 (42%), Gaps = 25/195 (12%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + TK +Q + R+ VSA AGSGKT +LV+R+++ + P LL +T T+A Sbjct: 3 VKWTKQQQKVIDLRNRNILVSAAAGSGKTAVLVERIIQKITDEQSPVDVDRLLIVTFTEA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ E I K + P + + L+ + + Sbjct: 63 AAAEMKDRIRE---------------AIEKKLEENPGNVHLERQATLVHSA-------PI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+FC +++++ ++ F I ++ + K L ++ L EE Sbjct: 101 TTIHSFCLSVIREHFHVIDLDPGFRIGEDGELKLLKQDVLDELLEECYSKGEEEFLSFTE 160 Query: 194 EILEISNDEDIETLI 208 ND IE +I Sbjct: 161 RFGTGKNDRKIEGII 175 >gi|311744700|ref|ZP_07718497.1| ATP-dependent DNA helicase PcrA [Aeromicrobium marinum DSM 15272] gi|311312009|gb|EFQ81929.1| ATP-dependent DNA helicase PcrA [Aeromicrobium marinum DSM 15272] Length = 774 Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 66/160 (41%), Gaps = 40/160 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 SET+ L +++ S P V A AGSGKT +L +R+ L+ A AHP ++L +T Sbjct: 24 SETL-LEDLNDAQREAVSHPGGPLLVVAGAGSGKTRVLTRRIAWLMAARGAHPGSILAIT 82 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM RV E++ S Sbjct: 83 FTNKAAAEMRERVAEMVGGASR-------------------------------------- 104 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + V T H+ C I+++ TS F + D S++L+ Sbjct: 105 AMWVSTFHSACVRILRREAATLGYTSSFTVYDAADSRRLM 144 >gi|261840231|gb|ACX99996.1| ATP-dependent nuclease [Helicobacter pylori 52] Length = 949 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/51 (50%), Positives = 33/51 (64%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYL 60 >gi|313622690|gb|EFR93052.1| ATP-dependent nuclease subunit A [Listeria innocua FSL J1-023] Length = 1235 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 30/166 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV R++ L+ N + LL +T T A+AAEM +R+ L Sbjct: 31 VAAAAGSGKTAVLVTRIIEKLINETENLNVDELLIVTFTNASAAEMKYRI------GKSL 84 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + ++ + P + + K LL + T+H+FC I+++ EA+ Sbjct: 85 EEALM---------QNPESAHLKKQVALL-------NYASISTLHSFCLEIIRKHYFEAD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE 197 I +F + + +S + +E + L ++NNE AF+ ++E Sbjct: 129 IDPNFRLIEPIESGMIRDEVLEDLLEKEYSIENNE----AFFHLVE 170 >gi|313683463|ref|YP_004061201.1| uvrd/rep helicase [Sulfuricurvum kujiense DSM 16994] gi|313156323|gb|ADR35001.1| UvrD/REP helicase [Sulfuricurvum kujiense DSM 16994] Length = 900 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 12/136 (8%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSHLSD 94 A+AGSGKT LV R L LL +PS+++ LT T AA EM R+ LE + S LS Sbjct: 11 ASAGSGKTFNLVVRYLSLLFMGENPSSIIALTFTNKAANEMLERIILTLEELPKRSELS- 69 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +I ++ G K + + +L L + +++ TI F I+++F L A + Sbjct: 70 -----QIARLSGIDEAKI-LEERPKVLARFLRSD--IQISTIDKFFGRILRKFALNAGLM 121 Query: 155 SHFAIADEEQSKKLIE 170 F + L+E Sbjct: 122 PTFKTIQNQHETALLE 137 >gi|148652066|ref|YP_001279159.1| UvrD/REP helicase [Psychrobacter sp. PRwf-1] gi|148571150|gb|ABQ93209.1| UvrD/REP helicase [Psychrobacter sp. PRwf-1] Length = 742 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 31/169 (18%) Query: 4 HNSFQEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHP 62 HNS SE +D + QLLA+ T V A AGSGKT L R L+ + A P Sbjct: 70 HNSVLSSSE-VDYAGELNPSQLLAATTTEGKVLVIAGAGSGKTKTLTYRTSYLIESGASP 128 Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSA-EITKIQGKKPNKSDMSKARHLL 121 S++L LT T+ AA E+ RV ++ A S + LS ++ I Sbjct: 129 SSILLLTFTRKAANEIKGRVKSLL-AESLADNRALSGLDLNAI----------------- 170 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T G T H+FC +++++ I F I D S+ ++ Sbjct: 171 -----TSG-----TFHSFCNMLLRRYSGLLGINPKFTILDTGDSEDALD 209 >gi|292670883|ref|ZP_06604309.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas noxia ATCC 43541] gi|292647504|gb|EFF65476.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas noxia ATCC 43541] Length = 1256 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 22/137 (16%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R++ ++ +L LT TKAAA+EM R+ + Sbjct: 24 VAAAAGSGKTRVLVERIISQVRTGTLSLDRILVLTFTKAAASEMRERI-----------E 72 Query: 95 EILSAEITKI---QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 L+AEI I G + + + + R LL G + T H+FC+ ++Q Sbjct: 73 AALNAEIDVIVENGGALEDVAALERQRVLLT-------GADISTFHSFCQHLIQSHIDAT 125 Query: 152 NITSHFAIADEEQSKKL 168 I F IA E++ + L Sbjct: 126 EIPPTFRIASEQEIRLL 142 >gi|254992021|ref|ZP_05274211.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL J2-064] Length = 541 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 30/166 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV R++ L+ AN + LL +T T A+AAEM R+ + + Sbjct: 250 VAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASAAEMKFRIGKGL------ 303 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 +E L+ + P+ + + + LL + T+H+FC I++++ +A+ Sbjct: 304 -EEALA--------QNPDSTHLKRQVALL-------NYASISTLHSFCLEIIRKYYFDAD 347 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE 197 I +F + + +S + +E ++ L ++NNE F+ ++E Sbjct: 348 IDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNE----PFFHLVE 389 >gi|317182762|dbj|BAJ60546.1| helicase [Helicobacter pylori F57] Length = 938 Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/51 (50%), Positives = 33/51 (64%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYL 60 >gi|283470166|emb|CAQ49377.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus ST398] Length = 1217 Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDCIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T+H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTLHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|182625416|ref|ZP_02953189.1| recombination helicase AddA [Clostridium perfringens D str. JGS1721] gi|177909413|gb|EDT71865.1| recombination helicase AddA [Clostridium perfringens D str. JGS1721] Length = 1271 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 31/166 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R+++++ +P LL +T T AAA+EM R+ Sbjct: 22 VAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAASEMRERI---------- 71 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151 I+K K P+ + + LL + T+H+FC E I F L Sbjct: 72 -----GDAISKALEKDPSSEVIQRQLALL-------NRASITTMHSFCLEVIKNNFHL-I 118 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 ++ F I D+ + E K+ LA + D + + F +++E Sbjct: 119 DLDPGFRIGDQTEC----ELIKQDILADLFEDMYAKDDECFKDLVE 160 >gi|261838828|gb|ACX98594.1| ATP-dependent nuclease [Helicobacter pylori 51] Length = 949 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/51 (50%), Positives = 33/51 (64%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYL 60 >gi|146313611|ref|YP_001178685.1| DNA-dependent helicase II [Enterobacter sp. 638] gi|145320487|gb|ABP62634.1| ATP-dependent DNA helicase UvrD [Enterobacter sp. 638] Length = 720 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L + N+ P +++ +T T AAAEM HR+ +++ Sbjct: 27 VLAGAGSGKTRVLVHRIAWLQSVENSSPYSIMAVTFTNKAAAEMRHRIAQLMGT------ 80 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + GG+ V T H +++ ++AN+ Sbjct: 81 --------------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLP 108 Query: 155 SHFAIADEEQSKKLIE 170 F I D E +L++ Sbjct: 109 QDFQILDSEDQLRLLK 124 >gi|332084670|gb|EGI89858.1| DNA helicase II [Shigella boydii 5216-82] Length = 720 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ +T Sbjct: 4 SYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ LL+ + G Sbjct: 62 FTNKAAAEMRHRI------------------------------------GLLMGT--SQG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ ++AN+ F I D E +L++ Sbjct: 84 GMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLK 124 >gi|312621145|ref|YP_004022758.1| uvrd/rep helicase [Caldicellulosiruptor kronotskyensis 2002] gi|312201612|gb|ADQ44939.1| UvrD/REP helicase [Caldicellulosiruptor kronotskyensis 2002] Length = 756 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 5/127 (3%) Query: 35 WVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 ++ A AG+GKT +LV+ +++ L N A S + +T T A +E+ R++E + L Sbjct: 30 YLKAGAGTGKTELLVELIIKCLNENPKASISNFVVITFTNKATSEVKRRLVERLYFDYSL 89 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + + + N++ M++ ++ L V TIH FCE I++Q+ Sbjct: 90 NHK---KLSSLSSLLADNRNIMNRQEDEKRKFVDLTSMLNVYTIHGFCEIILRQYGYLIG 146 Query: 153 ITSHFAI 159 I+ F I Sbjct: 147 ISPKFEI 153 >gi|315224517|ref|ZP_07866344.1| UvrD/REP helicase subfamily protein [Capnocytophaga ochracea F0287] gi|314945538|gb|EFS97560.1| UvrD/REP helicase subfamily protein [Capnocytophaga ochracea F0287] Length = 1060 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 12/144 (8%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +A+AGSGKT+ LV+ LR++L + P LL +T T A EM +R++E++ +S Sbjct: 12 NASAGSGKTYSLVKAYLRIILGSKQPDLFRQLLAITFTNKAVFEMKNRIIELLGVFSE-- 69 Query: 94 DEILS---AEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 D++L+ A T++ + P++ ++ L IL + TI F +++ F Sbjct: 70 DKMLTKPHAMFTELAKELNLPDEELRMRSAKALEHILHNYAAFNISTIDGFNHQLIRHFS 129 Query: 149 LEANITSHFAIADEEQSKKLIEEA 172 + ++ F + + SK L+E + Sbjct: 130 QDLHLNPFFEV--QLDSKALLERS 151 >gi|242373134|ref|ZP_04818708.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis M23864:W1] gi|242349085|gb|EES40686.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis M23864:W1] Length = 1218 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 37/196 (18%) Query: 32 RSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + V+A AGSGKT +LV+R++ R+L LL +T T +A EM HRV + I S Sbjct: 24 QDVLVAAAAGSGKTAVLVERIIQRILRDKIDVDRLLVVTFTNLSAREMKHRVDQRIQEAS 83 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + D PN + R I I + ++ T+H+FC ++QQ Sbjct: 84 -IED--------------PNNEHLKNQR---IKIHQA----QISTLHSFCLKLIQQ---- 117 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISD 210 H+ + D + + + EA+ L +D ++ + Y+IL+ + E L SD Sbjct: 118 -----HYDVLDIDPNFRTSNEAENVLLLDQTID---DVLERHYDILDPDFIDLTEQLSSD 169 Query: 211 IISN--RTALKLIFFF 224 + R +K ++FF Sbjct: 170 RNDDQFRDIIKRMYFF 185 >gi|225026995|ref|ZP_03716187.1| hypothetical protein EUBHAL_01251 [Eubacterium hallii DSM 3353] gi|224955680|gb|EEG36889.1| hypothetical protein EUBHAL_01251 [Eubacterium hallii DSM 3353] Length = 1221 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 25/179 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 VSA AG+GKT +LV R+ L++ +P L +T T AAAAEM R+ Sbjct: 20 VSAGAGAGKTRVLVSRMAELIMDEKNPVEADRFLVMTFTNAAAAEMKERI---------- 69 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 S ++ + K P H L + + T+H+FC +++ E + Sbjct: 70 -----SLDLEERLAKDPEN-------HYLRKQIRKIRQADISTVHSFCNHLIRTHYNELS 117 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 I F I +E + L ++A + L E K +D+ +E L+ D+ Sbjct: 118 IDPSFRIGEEGELFLLRQQAIEQLLEEAYASGRESFVKFAESYAPGKSDKVLEELVGDL 176 >gi|258424346|ref|ZP_05687226.1| recombination helicase AddA [Staphylococcus aureus A9635] gi|257845359|gb|EEV69393.1| recombination helicase AddA [Staphylococcus aureus A9635] Length = 1217 Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV Sbjct: 29 VAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRV----------DQ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I P + + R I I + ++ T H+FC ++QQ NI Sbjct: 79 RIQEASIA-----DPANAHLKNQR---IKIHQA----QISTFHSFCLKLIQQHYDVLNID 126 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L AF E+ E +S+D + Sbjct: 127 PNFRTSSEAENILLLEQ----TIDEVIEQHYDILDPAFIELTEQLSSDRSDDQF------ 176 Query: 214 NRTALKLIFFF 224 R +K ++FF Sbjct: 177 -RMIIKQLYFF 186 >gi|304403945|ref|ZP_07385607.1| recombination helicase AddA [Paenibacillus curdlanolyticus YK9] gi|304346923|gb|EFM12755.1| recombination helicase AddA [Paenibacillus curdlanolyticus YK9] Length = 1338 Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 24/138 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V+A AGSGKT +LV+R++R + A+ LL T TKAAA+EM RV Sbjct: 32 VAAAAGSGKTAVLVERIIRKISADTDVDRLLVATFTKAAASEMKERVR------------ 79 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEANIT 154 ++G + R L I + + T+H+FC E I +PL + Sbjct: 80 ------IALEGALARDPESEHLRRQLALINRS----SITTLHSFCLEVIRSYYPL-IGLD 128 Query: 155 SHFAIADEEQSKKLIEEA 172 F +A E +S+ L EA Sbjct: 129 PGFRMAGETESELLRMEA 146 >gi|163803195|ref|ZP_02197077.1| DNA helicase II [Vibrio sp. AND4] gi|159173016|gb|EDP57850.1| DNA helicase II [Vibrio sp. AND4] Length = 724 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D +++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 8 LDGLNEKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E+ ++ + GG+ Sbjct: 66 KAAAEMRGRIEEL--------------------------------------MMGSTGGMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 88 NGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125 >gi|21666221|gb|AAM73615.1| DNA helicase II [Escherichia coli] Length = 133 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 39/147 (26%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 1 PRTNLLVLAGAGSGKTRVLVHRFAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 60 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + GG+ V T H +++ Sbjct: 61 --------------------------------------SQGGMWVGTFHGLAHRLLRAHH 82 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKS 175 ++AN+ F I D E +L++ K+ Sbjct: 83 MDANLPQDFQILDSEDQLRLLKRLIKA 109 >gi|307246245|ref|ZP_07528326.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255229|ref|ZP_07537044.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259663|ref|ZP_07541387.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852854|gb|EFM85078.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861778|gb|EFM93757.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866308|gb|EFM98172.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 732 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 37/151 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E ++A P + V A AGSGKT +L R+ L+ + N S +L +T T Sbjct: 7 LDGLNDKQREAVVA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM HR+ +++ SH H L G+ Sbjct: 65 KAAAEMRHRIEHTLSSSSH---------------------------HRLF-------GMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEE 163 V T H+ +++ L+AN+ F I D E Sbjct: 91 VGTFHSIANRLLRSHYLDANLPQDFQIMDSE 121 >gi|170764037|ref|ZP_02630402.2| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens E str. JGS1987] gi|170664085|gb|EDT16768.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens E str. JGS1987] Length = 876 Score = 52.4 bits (124), Expect = 5e-05, Method: Composition-based stats. Identities = 46/211 (21%), Positives = 93/211 (44%), Gaps = 49/211 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 +I+ + +Q + ++ + + A+AG+GKT+ L +R+ ++ N+ PS +LC+T T A Sbjct: 7 MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERITSIIKNGNSKPSEILCITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 EMS RV++I+ + + ++ Sbjct: 67 CKEMSDRVMKIVGGEAK--------------------------------------DITIR 88 Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190 T H+FC +++ + +I S F I DE+ +++I + S ++ N +++K Sbjct: 89 TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQKVID 148 Query: 191 ------AFYEILEISNDEDIETLISDIISNR 215 A E LE ++ +T+I +I R Sbjct: 149 FIKVERARIETLEDRVLDEYKTVIDEIFKFR 179 >gi|90424242|ref|YP_532612.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18] gi|90106256|gb|ABD88293.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18] Length = 687 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 35/57 (61%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 P + V A AGSGKT+ L RV LL+ A P LL +T ++ AAAEMS RV I+ Sbjct: 28 PAPALLVIAGAGSGKTNTLAHRVAHLLVDGADPRRLLLMTFSRRAAAEMSRRVERIV 84 >gi|229593437|ref|YP_002875556.1| DNA-dependent helicase II [Pseudomonas fluorescens SBW25] gi|229365303|emb|CAY53652.1| DNA helicase II [Pseudomonas fluorescens SBW25] Length = 727 Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 39/142 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P V A AGSGKT +LV R+ L+ + NA P ++L +T T AAAEM HR+ +++ Sbjct: 23 PVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRHRIEQLMGI 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +P G+ V T H +++ Sbjct: 83 --------------------------------------SPAGMWVGTFHGLAHRLLRAHW 104 Query: 149 LEANITSHFAIADEEQSKKLIE 170 EA ++ F I D + ++L++ Sbjct: 105 QEAGLSQTFQILDSDDQQRLVK 126 >gi|168206214|ref|ZP_02632219.1| ATP-dependent nuclease, subunit A [Clostridium perfringens E str. JGS1987] gi|170662326|gb|EDT15009.1| ATP-dependent nuclease, subunit A [Clostridium perfringens E str. JGS1987] Length = 1271 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 36/198 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R+++++ +P LL +T T AAA+EM R+ Sbjct: 22 VAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAASEMRERI---------- 71 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEA 151 I+K K P+ + + LL + T+H+FC E I F L Sbjct: 72 -----GDAISKALEKDPSSEVLQRQLALL-------NRASITTMHSFCLEVIKNNFHL-I 118 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 ++ F I D+ + E K+ L + D + + F +++E + ++ I Sbjct: 119 DLDPGFRIGDQTEC----ELIKQDILGDLFEDMYAKDDECFKDLVEAYGGSKSDDNLNSI 174 Query: 212 ISNRTALKLIFFFFSYLW 229 I LK F S W Sbjct: 175 I-----LKFYNFIMSGPW 187 >gi|77461864|ref|YP_351371.1| DNA-dependent helicase II [Pseudomonas fluorescens Pf0-1] gi|77385867|gb|ABA77380.1| DNA helicase II [Pseudomonas fluorescens Pf0-1] Length = 727 Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 39/142 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P V A AGSGKT +LV R+ L+ + NA P ++L +T T AAAEM HR+ +++ Sbjct: 23 PVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRHRIEQLLGI 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 P G+ V T H +++ Sbjct: 83 --------------------------------------NPAGMWVGTFHGLAHRLLRAHW 104 Query: 149 LEANITSHFAIADEEQSKKLIE 170 EA ++ F I D + ++L++ Sbjct: 105 QEAGLSQTFQILDSDDQQRLVK 126 >gi|302670100|ref|YP_003830060.1| ATP-dependent nuclease subunit A AddA [Butyrivibrio proteoclasticus B316] gi|302394573|gb|ADL33478.1| ATP-dependent nuclease subunit A AddA [Butyrivibrio proteoclasticus B316] Length = 1317 Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 26/196 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK +Q + + VSA AGSGKT +LV+R++++++ LL +T TKAAAA+M Sbjct: 6 TKEQQAVIDARDCNILVSAAAGSGKTAVLVERIIQMIMGGVDIDHLLVVTFTKAAAAQMK 65 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 ++ I + L +E P+ + + L+ ++ TI +F Sbjct: 66 EKI--TIAIQNKLVEE-------------PDNKHLQRQETLI-------HNAQITTIDSF 103 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI- 198 C+ +++ I F + D+ + + L E+ + L + F +E Sbjct: 104 CQYVLRNNFNVIGIDPSFRVGDDGELRLLKEDVMQDMLEEEYAKCKDGENSDFLFCMEYF 163 Query: 199 ---SNDEDIETLISDI 211 S+D+ +E IS++ Sbjct: 164 STGSSDKKVEEYISEL 179 >gi|156972692|ref|YP_001443599.1| DNA-dependent helicase II [Vibrio harveyi ATCC BAA-1116] gi|156524286|gb|ABU69372.1| hypothetical protein VIBHAR_00351 [Vibrio harveyi ATCC BAA-1116] Length = 724 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E+ ++ + GG+ Sbjct: 66 KAAAEMRGRIEEL--------------------------------------MMGSAGGMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 88 NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLLK 125 >gi|153834693|ref|ZP_01987360.1| DNA helicase II [Vibrio harveyi HY01] gi|148868889|gb|EDL67949.1| DNA helicase II [Vibrio harveyi HY01] Length = 723 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 7 LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E+ ++ + GG+ Sbjct: 65 KAAAEMRGRIEEL--------------------------------------MMGSAGGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 87 NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLLK 124 >gi|91228031|ref|ZP_01262116.1| DNA helicase II [Vibrio alginolyticus 12G01] gi|269964541|ref|ZP_06178780.1| DNA helicase II [Vibrio alginolyticus 40B] gi|91188260|gb|EAS74559.1| DNA helicase II [Vibrio alginolyticus 12G01] gi|269830668|gb|EEZ84888.1| DNA helicase II [Vibrio alginolyticus 40B] Length = 724 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E+ ++ + GG+ Sbjct: 66 KAAAEMRGRIEEL--------------------------------------MMGSAGGMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 88 NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLLK 125 >gi|261343070|ref|ZP_05970928.1| DNA helicase II [Enterobacter cancerogenus ATCC 35316] gi|288314635|gb|EFC53573.1| DNA helicase II [Enterobacter cancerogenus ATCC 35316] Length = 720 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L + N P +++ +T T AAAEM HR+ +++ Sbjct: 27 VLAGAGSGKTRVLVHRIAWLQSVENCSPYSIMAVTFTNKAAAEMRHRIAQLMGT------ 80 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + GG+ V T H +++ ++AN+ Sbjct: 81 --------------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLP 108 Query: 155 SHFAIADEEQSKKLIE 170 F I D E +L++ Sbjct: 109 QDFQILDSEDQLRLLK 124 >gi|189463365|ref|ZP_03012150.1| hypothetical protein BACCOP_04082 [Bacteroides coprocola DSM 17136] gi|189429794|gb|EDU98778.1| hypothetical protein BACCOP_04082 [Bacteroides coprocola DSM 17136] Length = 1110 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 72/137 (52%), Gaps = 8/137 (5%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII 86 +D R A+AGSGKT L + ++ L+ + H +L +T T A AEM R+LE + Sbjct: 32 TDYPRLLVYKASAGSGKTFTLAVQYIKQLIEDTHAYRRILAVTFTNKATAEMKKRILEQL 91 Query: 87 TAWSHL---SDEILSAEITKIQGKKPNKSDMSK-ARHLLITILETPGGLKVQTIHAFCEA 142 ++ SD L E+ KI K N++++ + AR L I+ +++TI +F ++ Sbjct: 92 FGLANGLKSSDSYLE-ELLKITSK--NEAEIRRAAREALTNIIHDYSRFRIETIDSFFQS 148 Query: 143 IMQQFPLEANITSHFAI 159 +M+ E + ++ +I Sbjct: 149 VMRNLARELELGANMSI 165 >gi|188995913|ref|YP_001930165.1| ATP-dependent helicase [Porphyromonas gingivalis ATCC 33277] gi|188595593|dbj|BAG34568.1| ATP-dependent helicase [Porphyromonas gingivalis ATCC 33277] Length = 1074 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 4/137 (2%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPSTLL-CLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 +A+AGSGKTH L LRL L + +T T A AEM R+LE + + Sbjct: 11 TASAGSGKTHTLTGEYLRLALRTRGAFRYIQAVTFTNKATAEMKERILEELYGLAVGGSS 70 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + E+ + + + +A+ +L IL L+V+TI +F + +M+ F E + Sbjct: 71 PFAEELMQELALTTEQLQV-RAQEVLTEILNDYSSLRVKTIDSFFQEVMRAFSHELGLPG 129 Query: 156 HFAIADEEQSKKLIEEA 172 F I E + K ++E+A Sbjct: 130 GFRI--EMEQKAVLEQA 144 >gi|113866335|ref|YP_724824.1| superfamily I DNA/RNA helicase [Ralstonia eutropha H16] gi|113525111|emb|CAJ91456.1| Superfamily I DNA and RNA helicase [Ralstonia eutropha H16] Length = 699 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/49 (53%), Positives = 32/49 (65%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT+ L RV L+LA A P +L LT ++ AAAEM RV I+ Sbjct: 46 AGAGSGKTNTLAHRVAHLVLAGADPRRILLLTFSRRAAAEMGRRVERIV 94 >gi|325843353|ref|ZP_08167936.1| ATP-dependent nuclease subunit A [Turicibacter sp. HGF1] gi|325489382|gb|EGC91755.1| ATP-dependent nuclease subunit A [Turicibacter sp. HGF1] Length = 1198 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 29/131 (22%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 +SA AGSGKT +LV+R++ +++ + LL +T T+AAAAEM R+ S + D Sbjct: 30 ISAGAGSGKTAVLVERMIQKIIQEKLNIDELLVMTFTEAAAAEMKQRMR------SRIQD 83 Query: 95 EILSA---EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 E+ E K+Q K ++S +S T HAFC +++++ Sbjct: 84 ELEKQPYNEHLKVQLNKISQSHIS-------------------TFHAFCNKLIKRYYYLL 124 Query: 152 NITSHFAIADE 162 + F IAD+ Sbjct: 125 ELDPVFKIADD 135 >gi|296105303|ref|YP_003615449.1| DNA-dependent helicase II [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059762|gb|ADF64500.1| DNA-dependent helicase II [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 720 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L + N P +++ +T T AAAEM HR+ +++ Sbjct: 27 VLAGAGSGKTRVLVHRIAWLQSVENCSPYSIMAVTFTNKAAAEMRHRIAQLMGT------ 80 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + GG+ V T H +++ ++AN+ Sbjct: 81 --------------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLP 108 Query: 155 SHFAIADEEQSKKLIE 170 F I D E +L++ Sbjct: 109 QDFQILDSEDQLRLLK 124 >gi|295091233|emb|CBK77340.1| recombination helicase AddA, Firmicutes type [Clostridium cf. saccharolyticum K10] Length = 1273 Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 3/73 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 ++ TK ++ + R+ VSA AGSGKT +LV+R++R++ P LL +T TKA Sbjct: 3 VNWTKEQRQVIESRDRNLLVSAAAGSGKTAVLVERIIRMITDGERPGDIERLLVMTFTKA 62 Query: 74 AAAEMSHRVLEII 86 AA+EM R+ + I Sbjct: 63 AASEMRERIHDAI 75 >gi|283795557|ref|ZP_06344710.1| ATP-dependent nuclease subunit A [Clostridium sp. M62/1] gi|291077226|gb|EFE14590.1| ATP-dependent nuclease subunit A [Clostridium sp. M62/1] Length = 1273 Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 3/73 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 ++ TK ++ + R+ VSA AGSGKT +LV+R++R++ P LL +T TKA Sbjct: 3 VNWTKEQRQVIESRDRNLLVSAAAGSGKTAVLVERIIRMITDGERPGDIERLLVMTFTKA 62 Query: 74 AAAEMSHRVLEII 86 AA+EM R+ + I Sbjct: 63 AASEMRERIHDAI 75 >gi|295095174|emb|CBK84264.1| ATP-dependent DNA helicase UvrD [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 724 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L + N P +++ +T T AAAEM HR+ +++ Sbjct: 31 VLAGAGSGKTRVLVHRIAWLQSVENCSPYSIMAVTFTNKAAAEMRHRIAQLMGT------ 84 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + GG+ V T H +++ ++AN+ Sbjct: 85 --------------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLP 112 Query: 155 SHFAIADEEQSKKLIE 170 F I D E +L++ Sbjct: 113 QDFQILDSEDQLRLLK 128 >gi|255323065|ref|ZP_05364201.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter showae RM3277] gi|255299927|gb|EET79208.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter showae RM3277] Length = 931 Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 20/174 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + +LL+ A + LT TK AA EM R+++ E Sbjct: 7 LEASAGSGKTFALSVRFIAILLSGADAREITALTFTKKAANEMKERIVQTFLRLEEKGAE 66 Query: 96 ILSAEITKIQGKKPNK---SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + AE+ +I G +K ++A H L LK+ T +F I++ F L Sbjct: 67 L--AELEQILGAGRDKILAMRDARATHFL------ESDLKIGTFDSFFVGILRSFCLNLG 118 Query: 153 ITSHFAIAD---EEQSKKLIEEAKK-----STLASIMLDNNEELKKAFYEILEI 198 +++ F +++ E Q + + K LA+ ++ E + +F+E LE+ Sbjct: 119 LSADFEVSENLNELQRGEFVASVSKDMRLLKALAN-LIATAERSQSSFFESLEM 171 >gi|296141008|ref|YP_003648251.1| ATP-dependent DNA helicase PcrA [Tsukamurella paurometabola DSM 20162] gi|296029142|gb|ADG79912.1| ATP-dependent DNA helicase PcrA [Tsukamurella paurometabola DSM 20162] Length = 802 Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 39/106 (36%), Positives = 52/106 (49%), Gaps = 12/106 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII-----TAW 89 + A AGSGKT +L +R+ LL A HP +L +T T AAAEM RV ++I T W Sbjct: 51 IVAGAGSGKTAVLTRRIAYLLRARGMHPGQILAITFTNKAAAEMRERVAQLIGPRANTMW 110 Query: 90 ----SHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPG 129 IL A+ + G N S D +R LL I++ G Sbjct: 111 VSTFHSTCVRILRAQAGLLPGMNSNFSIYDADDSRRLLTMIVKEMG 156 >gi|297616808|ref|YP_003701967.1| UvrD/REP helicase [Syntrophothermus lipocalidus DSM 12680] gi|297144645|gb|ADI01402.1| UvrD/REP helicase [Syntrophothermus lipocalidus DSM 12680] Length = 709 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 41/159 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 ++ ++Q + E +L D V A AGSGKT +L R+ L P +L +T T Sbjct: 4 VEGLNQEQKEAVLHVDG--PCLVLAGAGSGKTRVLTTRLAYLCHTGIRPRNILAITFTNK 61 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +I ++ G + Sbjct: 62 AAREMKERVERLIPGFT---------------------------------------GQWI 82 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 QT HA C I++Q + F+I DE + + L++E Sbjct: 83 QTFHATCYRILRQEIDRLGYSRDFSIVDEAEQRALVKEC 121 >gi|323704721|ref|ZP_08116299.1| UvrD/REP helicase [Thermoanaerobacterium xylanolyticum LX-11] gi|323536183|gb|EGB25956.1| UvrD/REP helicase [Thermoanaerobacterium xylanolyticum LX-11] Length = 1073 Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 28/154 (18%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL--LANAHPSTLLCLTHTKAAAAEMSH 80 EQ A D ++ + A AGSGKT +L +R ++LL + + ++ +T T+ AAAEM Sbjct: 14 EQSRALDIGKNVALKAGAGSGKTRVLTKRYIKLLNDVTDIKIDNIVAITFTRKAAAEMKE 73 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ + EI S + GKK + R LI + TIH FC Sbjct: 74 RIRK----------EIESLCKSDKDGKK-----WTVFRDSLIFA-------NIDTIHGFC 111 Query: 141 EAIMQQFPLEANITSHFAIADEEQ----SKKLIE 170 E +++ +E ++ F+I DE + KK++E Sbjct: 112 EKMIRDNFVETSVDPTFSIMDEAEVSTAVKKMVE 145 >gi|323692610|ref|ZP_08106842.1| hypothetical protein HMPREF9475_01705 [Clostridium symbiosum WAL-14673] gi|323503307|gb|EGB19137.1| hypothetical protein HMPREF9475_01705 [Clostridium symbiosum WAL-14673] Length = 1222 Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 26/200 (13%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAA 74 ++ TK ++ + R+ VSA AGSGKT +LV+R++R++ ++ LL +T TKAA Sbjct: 3 VNWTKEQKAVIESRNRNLLVSAAAGSGKTAVLVERIIRMITGDSPIDIDRLLVMTFTKAA 62 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM R+ A I K + P + + +T+ ++ Sbjct: 63 AAEMRERI---------------QAAIEKKLEEDPGNEHLQQQA---VTVQFA----QIT 100 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TI +FC I+++ +I F + DE + L E + + + E ++ F + Sbjct: 101 TIDSFCLHILREHFDCIDIDPAFRVGDEGEMLLLRAEVLQELMEDSYANGGEAFER-FVD 159 Query: 195 ILEISN-DEDIETLISDIIS 213 I D IE I + S Sbjct: 160 TYSIGKADGGIEDYIMQVFS 179 >gi|325286154|ref|YP_004261944.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489] gi|324321608|gb|ADY29073.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489] Length = 1039 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 6/130 (4%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 SA+AGSGKT+ L + L+++L++A + +L +T T A EM R+L+ + A+S + Sbjct: 10 SASAGSGKTYTLAKEYLKIILSSATAKSYRQILAITFTNKAVNEMKQRILDNLYAFSKVD 69 Query: 94 DEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 +E +++ K+ N S +A+ + +IL + TI F +++ F + Sbjct: 70 EENKPSDLFLDVAKELNVSTEELQKRAKQVHKSILHNYAFFDISTIDKFTHRLIRTFAKD 129 Query: 151 ANITSHFAIA 160 I +F + Sbjct: 130 LKIPQNFEVV 139 >gi|304436811|ref|ZP_07396777.1| ATP-dependent nuclease subunit A [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370183|gb|EFM23842.1| ATP-dependent nuclease subunit A [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 1264 Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 29/190 (15%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTK 72 D ++ T +Q + V+A AGSGKT +LV+R++ + N S +L LT TK Sbjct: 3 DRLTFTADQQRAIDARGHNILVAAAAGSGKTRVLVERIIS-QVRNEELSLDRILVLTFTK 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA EM R+ + L+AEI I G ++ + I + + Sbjct: 62 AAALEMRERI-----------EAALNAEIDAIAGDAGISKEIDRLERQRILLTDA----D 106 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+FC+ ++Q +I F +A E++ + L K+ + +E L++ + Sbjct: 107 ISTFHSFCQRLLQAHIDATDIPPTFRLASEQEIRLL----KRDVM-------DELLERKY 155 Query: 193 YEILEISNDE 202 E ++ +DE Sbjct: 156 EEAVQGGSDE 165 >gi|187251691|ref|YP_001876173.1| UvrD/REP helicase [Elusimicrobium minutum Pei191] gi|186971851|gb|ACC98836.1| UvrD/REP helicase [Elusimicrobium minutum Pei191] Length = 1074 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 38/168 (22%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 QT+ E +D R+ V A AG+GKT +L+ R+ L++ N ++ LT T+ AAAE Sbjct: 8 QTRYEASTVTD--RNIVVEAGAGTGKTTLLISRLCYLMIVKNISVERIVALTFTEKAAAE 65 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGK-----KPNKSDMSKARHL-----------L 121 + R LSA++ KI + + +K + HL + Sbjct: 66 IKIR---------------LSAQLQKIIKECLSVTQKDKITLELLAHLSKEEIIIRAQRV 110 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + LE G + TIH FC I++ +P+EA I+ A+ DE Q ++ + Sbjct: 111 LEFLER--GF-ISTIHGFCSYILKAYPVEAGISPS-AVVDEGQRRETV 154 >gi|312963948|ref|ZP_07778419.1| DNA helicase II / ATP-dependent DNA helicase [Pseudomonas fluorescens WH6] gi|311281983|gb|EFQ60593.1| DNA helicase II / ATP-dependent DNA helicase [Pseudomonas fluorescens WH6] Length = 727 Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 39/142 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P V A AGSGKT +LV R+ L+ + NA P ++L +T T AAAEM HR+ +++ Sbjct: 23 PVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRHRIEQLMGI 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +P G+ V T H +++ Sbjct: 83 --------------------------------------SPAGMWVGTFHGLAHRLLRAHW 104 Query: 149 LEANITSHFAIADEEQSKKLIE 170 EA + F I D + ++L++ Sbjct: 105 QEAGLAQTFQILDSDDQQRLVK 126 >gi|284928732|ref|YP_003421254.1| Rep family ATP-dependent DNA helicase [cyanobacterium UCYN-A] gi|284809191|gb|ADB94896.1| ATP-dependent DNA helicase, Rep family [cyanobacterium UCYN-A] Length = 772 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 14/113 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L++ N +P ++L +T T AA EM R+ D Sbjct: 28 VIAGAGSGKTRALTYRIANLIIYNKVNPESILAVTFTNKAAKEMKDRL-----------D 76 Query: 95 EILSAEITKIQGKKP--NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 ++L+ EI+ K+P + S+ ++ + L +T L + T H+ C I++ Sbjct: 77 KLLAQEISSKNYKQPFDSLSEFNQKKLLSFIYKKTTKQLWIGTFHSLCARILR 129 >gi|222823417|ref|YP_002574991.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter lari RM2100] gi|222538639|gb|ACM63740.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter lari RM2100] Length = 915 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 12/138 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + L+L A + +L LT T A EM R+ + + L + Sbjct: 11 LEASAGSGKTFALSVRFVALVLMGAKINEILALTFTNKTANEMKERIFKTFLEFDMLENG 70 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILET------PGGLKVQTIHAFCEAIMQQFPL 149 AE ++ + K++ LI + E L + T +F I++ F L Sbjct: 71 QNKAECNELMKM------LDKSKEELIALKEKYKDEFLRSKLNIYTFDSFFSQIIRSFAL 124 Query: 150 EANITSHFAIADEEQSKK 167 ++ S F I +E + K Sbjct: 125 NLDLMSDFIITEESDNYK 142 >gi|303235624|ref|ZP_07322231.1| UvrD/REP helicase [Prevotella disiens FB035-09AN] gi|302484071|gb|EFL47059.1| UvrD/REP helicase [Prevotella disiens FB035-09AN] Length = 893 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 65/164 (39%), Gaps = 43/164 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A+ G GKTHIL +RV + L +LCLT T AA EM R+ ++ Sbjct: 26 VLASPGCGKTHILAERVKQARLQGIVYEDMLCLTFTNRAAREMLSRIKSVVA-------- 77 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 E L+V +H FC + E + + Sbjct: 78 ------------------------------EDFSALQVGNVHHFCAKFLFD---EGVVPA 104 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 +I DEE+ +I E K+ ++M NN ++ +YEI+ + Sbjct: 105 ETSIIDEEECVSIIAEYKQQNEEAVM--NNYAQQREYYEIIHFA 146 >gi|256380499|ref|YP_003104159.1| ATP-dependent DNA helicase PcrA [Actinosynnema mirum DSM 43827] gi|255924802|gb|ACU40313.1| ATP-dependent DNA helicase PcrA [Actinosynnema mirum DSM 43827] Length = 781 Score = 52.0 bits (123), Expect = 7e-05, Method: Composition-based stats. Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 45/166 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L +R+ LL AHP ++ +T T AAAEM RV +++ Sbjct: 40 VVAGAGSGKTRVLTRRIAHLLAERGAHPGEIMAITFTNKAAAEMKERVADLVG------- 92 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +AR + ++ T H+ C ++++ I+ Sbjct: 93 --------------------PRARSMWVS-----------TFHSMCVRLVRREHKALGIS 121 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 S F+I D + +++LI TL + LD + + A + ISN Sbjct: 122 SSFSIYDSDDTRRLI------TLVARDLDLDPKRYPARTLAIHISN 161 >gi|34541655|ref|NP_906134.1| UvrD/REP helicase domain-containing protein [Porphyromonas gingivalis W83] gi|34397973|gb|AAQ67033.1| UvrD/REP helicase domain protein [Porphyromonas gingivalis W83] Length = 1102 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 20/145 (13%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPSTLL-CLTHTKAAAAEMSHRVLE-----IITAWS 90 +A+AGSGKTH L LRL L + +T T A AEM R+LE + S Sbjct: 11 TASAGSGKTHTLTGEYLRLALRTRGAFRYIQAVTFTNKATAEMKERILEELYSLAVGGSS 70 Query: 91 HLSDEI---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 ++E+ L+ ++Q +A+ +L IL L+V+TI +F + +M+ F Sbjct: 71 PFAEELMQELALTTEQLQ---------VRAQEVLTEILNDYSSLRVKTIDSFFQEVMRAF 121 Query: 148 PLEANITSHFAIADEEQSKKLIEEA 172 E + F I E + K ++E+A Sbjct: 122 SHELGLPGGFRI--EMEQKAVLEQA 144 >gi|296132525|ref|YP_003639772.1| recombination helicase AddA [Thermincola sp. JR] gi|296031103|gb|ADG81871.1| recombination helicase AddA [Thermincola potens JR] Length = 1279 Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 25/156 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 VSA AG+GKT +LV+R++R ++ P LL +T TKAAA EM R+ Sbjct: 23 VSAAAGAGKTAVLVERIIRRIVDPIDPVDVDRLLIVTFTKAAANEMRERI---------- 72 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 I + P +++ LL + T+H+FC +++Q+ Sbjct: 73 -----GLAIARELDNNPASLHLNRQATLLSRAY-------ITTLHSFCLDVVRQYFYRLE 120 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + F +AD+ ++ ++ E + + +EE Sbjct: 121 LDPAFRVADDAEAALMLMETLEDLFEELYSSGDEEF 156 >gi|320107768|ref|YP_004183358.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4] gi|319926289|gb|ADV83364.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4] Length = 1189 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 11/193 (5%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLE 84 A D TRS V A AGSGKT +L+QR L+LLL P+ ++ +T T A E+ +R+L Sbjct: 14 ALDTTRSWIVEAPAGSGKTGLLIQRYLKLLLDPQIESPAQVIAITFTTKATEEIRNRILS 73 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 +++ S E+ S E T + K +++ +L+ P L ++TI + I Sbjct: 74 ALSSASQ-DTEVDSFERTT---RDLAKQVLARDAEHGWQLLQQPEQLNIRTIDSLAAEIA 129 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL--EISNDE 202 + P+ A A E + L A + + + + EL +A IL +N Sbjct: 130 RSMPVLAGGWGKLQPA--EDAWPLYARAARRVMLKLG-GEDRELHQAIETILLHRDANLA 186 Query: 203 DIETLISDIISNR 215 +E LI ++ R Sbjct: 187 GVEALICGMLQKR 199 >gi|291544540|emb|CBL17649.1| recombination helicase AddA, Firmicutes type [Ruminococcus sp. 18P13] Length = 1187 Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats. Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 29/152 (19%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAW 89 S VSA AGSGKT +LV+R++R L HP + L +T T AAAEM R Sbjct: 18 SFLVSAAAGSGKTSVLVERLIRQLTDPEHPVSAARLAVVTFTNDAAAEMKSR-------- 69 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 L +T+ + P + + + L K+ TIH+FC +++ Sbjct: 70 -------LEHALTQCIAQDPRNVWLRQQQSQLQCA-------KICTIHSFCFDLIRDHCA 115 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 E +IT F I +E + ++ LA IM Sbjct: 116 ELDITPTFRILEETEMNMMVSRG----LADIM 143 >gi|317488290|ref|ZP_07946855.1| hypothetical protein HMPREF1023_00553 [Eggerthella sp. 1_3_56FAA] gi|316912607|gb|EFV34151.1| hypothetical protein HMPREF1023_00553 [Eggerthella sp. 1_3_56FAA] Length = 191 Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 39/166 (23%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-----LLCLTHTKAAAAEMSHRVLEIITAWS 90 VSA AGSGKT L QR+ LL + P+ +L +T T+ AAAE+ RV + A Sbjct: 23 VSAGAGSGKTFTLTQRIAYALLPESGPAASGVDEVLAITFTEKAAAEIKARVKRTLRA-- 80 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 E L+ E ++ G + TIH C I++ L+ Sbjct: 81 ----EGLAEEALRVDGA------------------------WISTIHGMCARILRAHALD 112 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 + F I + + + + +A L D+N+ + + Y L Sbjct: 113 LGLDPAFGIMGDAERAEAVADAIDGALG----DDNDIIARGSYAAL 154 >gi|299143270|ref|ZP_07036350.1| UvrD/REP helicase subfamily [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517755|gb|EFI41494.1| UvrD/REP helicase subfamily [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 1036 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 40/194 (20%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLL----LANAHP-STLLCLTHTKAAAAEMSHRVLEII 86 ++ +SA AG+GKT +L +R L +L L + +L +T+T AA EM Sbjct: 17 KNICLSAGAGTGKTKVLTERFLNILKNGNLTKGYELEEILAITYTNKAAFEMK------- 69 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKAR-HLLITILETPGGLKVQTIHAFCEAIMQ 145 +KI+G +SK++ + L I + ++ TIHAFC +++ Sbjct: 70 ---------------SKIKGA------LSKSKDNKLKDIYKFFSNAQIFTIHAFCGELIR 108 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 ++PL + F I + +++ ++ +A + L +N+ L + E+ EI DI Sbjct: 109 KYPLAVEVDPEFEICEPLEAEDILRDATNTVLKK--YENDMRLYELLMELSEI----DIR 162 Query: 206 TLISDIISNRTALK 219 IIS LK Sbjct: 163 KFSDAIISLYDDLK 176 >gi|331082717|ref|ZP_08331840.1| recombination helicase AddA [Lachnospiraceae bacterium 6_1_63FAA] gi|330400336|gb|EGG79978.1| recombination helicase AddA [Lachnospiraceae bacterium 6_1_63FAA] Length = 1224 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 29/157 (18%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 +S T+ +Q + + VSA AGSGKT +LV+R+++ + +P LL +T T+A Sbjct: 3 VSWTEEQQKVIDTRNCNILVSAAAGSGKTAVLVERIIQRITDKNNPVDIDELLIVTFTRA 62 Query: 74 AAAEMSHRVLEIITA--WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ + I ++ DE L + T + H LIT Sbjct: 63 AAGEMKERIRQAIEKKLEANPEDEHLQRQSTLVH-------------HALIT-------- 101 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 TI +FC I++ + ++ F + DE + + L Sbjct: 102 ---TIDSFCSYIVKNYFHLIDLDPSFRMGDEGEMRLL 135 >gi|329938133|ref|ZP_08287584.1| ATP-dependent DNA helicase II [Streptomyces griseoaurantiacus M045] gi|329302622|gb|EGG46512.1| ATP-dependent DNA helicase II [Streptomyces griseoaurantiacus M045] Length = 901 Score = 51.6 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL N HP +L +T T AA EM RV +++ +H Sbjct: 101 IVAGAGSGKTRVLTHRIAHLLAERNVHPGQILAITFTNKAAGEMKERVEQLVGPRAH--- 157 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + V T H+ C I+++ T Sbjct: 158 -----------------------------------AMWVMTFHSACVRILRRESKRLGFT 182 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 183 SSFSIYDAADSKRLM 197 >gi|291548281|emb|CBL21389.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Ruminococcus sp. SR1/5] Length = 296 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 29/169 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R+ VSA AGSGKT +LVQR+L ++ P LL +T T+AAA EM R+ + Sbjct: 18 RNILVSAAAGSGKTAVLVQRILSKIMDPLKPVDIDRLLIMTFTRAAAGEMRERIERGL-- 75 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 D+ L+ + P+ + + L+ T ++ TI FC +++ + Sbjct: 76 -----DQALAED--------PDNEHLQRQMTLIHTA-------QITTIDGFCAYVIRNYF 115 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 + + ADE + K L E+ L + D+ E K F +E Sbjct: 116 HLIGLDPGYRTADEGELKLLQED----VLKELFEDHYAERKADFTAFVE 160 >gi|313673705|ref|YP_004051816.1| uvrd/rep helicase [Calditerrivibrio nitroreducens DSM 19672] gi|312940461|gb|ADR19653.1| UvrD/REP helicase [Calditerrivibrio nitroreducens DSM 19672] Length = 1029 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 27/151 (17%) Query: 36 VSANAGSGKTHILVQRVLRLL---LANAH------P----STLLCLTHTKAAAAEMSHRV 82 + A+AGSGKT+ L R + LL L N + P S+++ +T T A+ EM RV Sbjct: 20 IKASAGSGKTYNLASRFIELLGLYLKNKNFSVAIIPPKDLSSIIAITFTNKASLEMKDRV 79 Query: 83 LEIITAWSHL-SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 ++ + + +E+ ++ITK AR LLI IL+ + V TI +F Sbjct: 80 MKFLKGLGGIRKNELEKSDITK-----------EDARKLLIHILKNFEHINVTTIDSFMN 128 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 + + F ++ + + I + S+K+ E A Sbjct: 129 TLHKAFAVDLGVYPDYDITFD--SEKIFESA 157 >gi|304314662|ref|YP_003849809.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str. Marburg] gi|302588121|gb|ADL58496.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str. Marburg] Length = 918 Score = 51.6 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A G+GKT I+V+RV +L+ P +L+ +T TK AA E+ R+L Sbjct: 24 VVAGPGAGKTRIIVERVAQLIEERGVDPGSLVVITFTKKAADELKERIL----------- 72 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G+ ++++ +++ TIH+FC I++ +P + Sbjct: 73 -----------GRVGSRAEE----------------MQISTIHSFCNRILRTYPDHHPLG 105 Query: 155 SHFAIADEEQSKKLIEEAKK 174 SHF + DEE+ I + ++ Sbjct: 106 SHFHVLDEEKQLMFIYDHRE 125 >gi|225017584|ref|ZP_03706776.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum DSM 5476] gi|224949644|gb|EEG30853.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum DSM 5476] Length = 865 Score = 51.6 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 43/152 (28%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMS 79 + ++ + + R+ + A AG+GKT+ L R+++LL A P +LCLT T A EM Sbjct: 13 QQQKYVVDELGRNILLLAAAGTGKTNTLALRIVKLLREGRAAPEQVLCLTFTNRACKEMK 72 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIH 137 R++ + P GLK V+T H Sbjct: 73 ERIVSAV----------------------------------------GPEGLKIEVRTFH 92 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 +FC ++Q F ++ S F I DE+ ++L+ Sbjct: 93 SFCYELIQAFVKTTDLPSGFVIYDEDDCRELL 124 >gi|260589313|ref|ZP_05855226.1| ATP-dependent nuclease subunit A [Blautia hansenii DSM 20583] gi|260540394|gb|EEX20963.1| ATP-dependent nuclease subunit A [Blautia hansenii DSM 20583] Length = 1223 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 29/157 (18%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 +S T+ +Q + + VSA AGSGKT +LV+R+++ + +P LL +T T+A Sbjct: 3 VSWTEEQQKVIDTRNCNILVSAAAGSGKTAVLVERIIQRITDKNNPVDIDELLIVTFTRA 62 Query: 74 AAAEMSHRVLEIITA--WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ + I ++ DE L + T + H LIT Sbjct: 63 AAGEMKERIRQAIEKKLEANPEDEHLQRQSTLVH-------------HALIT-------- 101 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 TI +FC I++ + ++ F + DE + + L Sbjct: 102 ---TIDSFCSYIVKNYFHLIDLDPSFRMGDEGEMRLL 135 >gi|302343284|ref|YP_003807813.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075] gi|301639897|gb|ADK85219.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075] Length = 1159 Score = 51.6 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 29/164 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH-----PSTLLCLTHTKAAAAEMSHRVLEII 86 R+ V+A AG+GKT LV+ + LL N P ++ +T T+ AAAEM RV++ + Sbjct: 10 RNYCVTAGAGAGKTSCLVKAYVGLLAGNDQRPPLAPRQIVAITFTEKAAAEMRGRVMDRV 69 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 A L+A+ + N+ + S + TIH FC A++++ Sbjct: 70 AA--------LAAKEGGRWAEIINQLEWS----------------PISTIHGFCAALLRE 105 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + + FAI D + +++ EA L M ++ L + Sbjct: 106 YGSLLGLDPDFAILDGQAFDEMLSEAVAEVLRQAMDHDDPALGR 149 >gi|160945992|ref|ZP_02093218.1| hypothetical protein FAEPRAM212_03525 [Faecalibacterium prausnitzii M21/2] gi|158443723|gb|EDP20728.1| hypothetical protein FAEPRAM212_03525 [Faecalibacterium prausnitzii M21/2] Length = 1228 Score = 51.6 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 25/167 (14%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 T ++Q +D + VSA AGSGKT +L +R ++L+ HP LL +T T AAAA Sbjct: 7 TPAQQAAIADRGGALLVSAAAGSGKTAVLTERAVQLITDPEHPVNADRLLIVTFTNAAAA 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R+ + + S L +P + + + R LL P + TI Sbjct: 67 ELRARIGQALLHRSQL---------------QPGNAMLRRQRMLL---QRAP----ICTI 104 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 AFC ++ + +I FA AD + L A TL + D Sbjct: 105 DAFCLNLLHKHFQALDIPPDFAPADPGTVQLLRGAALAETLENAYRD 151 >gi|206896426|ref|YP_002246429.1| ATP-dependent DNA helicase PcrA [Coprothermobacter proteolyticus DSM 5265] gi|206739043|gb|ACI18121.1| ATP-dependent DNA helicase PcrA [Coprothermobacter proteolyticus DSM 5265] Length = 696 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 42/167 (25%) Query: 7 FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PST 64 + E +++DL ++++ + P + + A GSGKT +L R L + H P Sbjct: 32 YNEDVDSVDLSKLNEAQKQAVTAPPKPLAIIAGPGSGKTRVLTYRAL-FAVKEWHLPPER 90 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA E+ R+ +I D I +A Sbjct: 91 ILAITFTNKAADELKERLGRLIPE----GDRIFAA------------------------- 121 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T+H+F +++ F A I+ +F I D++ SK LIE+ Sbjct: 122 ----------TMHSFAARMLRYFAPYAGISQNFVIYDDDDSKGLIED 158 >gi|217032964|ref|ZP_03438438.1| hypothetical protein HPB128_182g18 [Helicobacter pylori B128] gi|216945333|gb|EEC24007.1| hypothetical protein HPB128_182g18 [Helicobacter pylori B128] Length = 68 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/51 (50%), Positives = 33/51 (64%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 10 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYL 60 >gi|110801811|ref|YP_697750.1| helicase/exonuclease [Clostridium perfringens SM101] gi|110682312|gb|ABG85682.1| helicase/exonuclease [Clostridium perfringens SM101] Length = 870 Score = 51.6 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 46/211 (21%), Positives = 93/211 (44%), Gaps = 49/211 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 +I+ + +Q + ++ + + A+AG+GKT+ L +RV ++ N+ PS +LC+T T A Sbjct: 1 MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAKRVTSIIKNGNSKPSEILCITFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 EMS RV++I+ + + ++ Sbjct: 61 CKEMSDRVMKIVGGEAK--------------------------------------DITIR 82 Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK---- 189 T H+FC +++ + +I S F I DE+ +++I + S ++ N +++ Sbjct: 83 TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQRVID 142 Query: 190 -----KAFYEILEISNDEDIETLISDIISNR 215 +A E LE ++ +T+I +I R Sbjct: 143 FIKVERARIETLEDRVLDEYKTVIDEIFKFR 173 >gi|300312090|ref|YP_003776182.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1] gi|300074875|gb|ADJ64274.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae SmR1] Length = 707 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 34/51 (66%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT+ L RV RL+L A P +L L+ ++ AAA+M RV ++I Sbjct: 50 IVAGAGSGKTNTLAHRVARLVLEGADPQRILLLSFSRRAAADMGRRVGQVI 100 >gi|66360164|ref|XP_627217.1| UvrD like super family I helicase involved in nucleotide excision repair, possible bacterial horizontal transfer [Cryptosporidium parvum Iowa II] gi|46228624|gb|EAK89494.1| UvrD like super family I helicase involved in nucleotide excision repair, possible bacterial horizontal transfer [Cryptosporidium parvum Iowa II] Length = 917 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 14/148 (9%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 S + A G+GKT L R++R LL+ P +L LT TK AA E+ RV I+ + S Sbjct: 49 SLLIVAGPGTGKTATLTSRIVRFLLSGYSP--ILALTFTKKAANELKSRV-SIVYSSSSK 105 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 S +I K+D+ + + TP + + TIH+FC +++++ Sbjct: 106 IIYSKSKQI---------KNDLRNEKGF-SDFVPTPE-IFIGTIHSFCWKLLKEYGSFIG 154 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASI 180 + AI D+E + KL++ L+ + Sbjct: 155 LPKDIAIIDKELAIKLLKSCLSENLSKV 182 >gi|303231758|ref|ZP_07318481.1| ATP-dependent nuclease subunit A [Veillonella atypica ACS-049-V-Sch6] gi|302513707|gb|EFL55726.1| ATP-dependent nuclease subunit A [Veillonella atypica ACS-049-V-Sch6] Length = 1273 Score = 51.6 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 35/171 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV-LEIITAWSH 91 V+A AGSGKT +LV+R++ L +P L+ +T TKAAAAEMS R+ + + A Sbjct: 28 VAAAAGSGKTAVLVERIITRLKDMENPLSVQELMVVTFTKAAAAEMSARIGVALAKAMES 87 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 D+ L A + + P+ + T+H+FC+ + Sbjct: 88 TDDKALQARLERQLNLLPSA--------------------HISTLHSFCQWV-------- 119 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDN--NEELKKAFYEILEISN 200 I S+F D + ++ EA+ + L +L+N E + Y I ++S+ Sbjct: 120 -IRSYFYKLDIPPTARIGNEAEMALLKQEVLENLLKEAYEHNMYGIFDLSD 169 >gi|42561294|ref|NP_975745.1| ATP-dependent DNA helicase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492792|emb|CAE77387.1| ATP-dependent DNA helicase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321313|gb|ADK69956.1| putative ATP-dependent DNA helicase PcrA [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 722 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 48/189 (25%) Query: 14 IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 +DL++ + +L +D P R + A AGSGKT ++ ++ L+ + P+ +L +T T Sbjct: 7 LDLLNSQQLAAVLNTDKPVR---IIAGAGSGKTRVITTKIAYLIEKKDIDPTRILAVTFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RVL+I TK Q K P Sbjct: 64 NKAAKEMKERVLQI----------------TKNQKKSP---------------------- 85 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL--- 188 + T HA+C +++ + F I D + K++I+ A K ++I L N++ Sbjct: 86 FISTFHAWCSKVLRIDGKHVGLKDKFLIIDSDDQKRIIKNALKE--SNIELSENDKKTFD 143 Query: 189 KKAFYEILE 197 KK Y+I E Sbjct: 144 KKILYKIKE 152 >gi|207111045|ref|ZP_03245207.1| helicase [Helicobacter pylori HPKX_438_CA4C1] Length = 56 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/51 (50%), Positives = 33/51 (64%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 3 LKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYL 53 >gi|300782729|ref|YP_003763020.1| DNA helicase II/ATP-dependent DNA helicase [Amycolatopsis mediterranei U32] gi|299792243|gb|ADJ42618.1| DNA helicase II/ATP-dependent DNA helicase [Amycolatopsis mediterranei U32] Length = 804 Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L +R+ LL HP ++ +T T AAAEM RV ++ Sbjct: 45 VVAGAGSGKTRVLTRRIAYLLGQRRVHPGEIMAITFTNKAAAEMRERVAALV-------- 96 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G++ N + V T H+ C I+++ +++ Sbjct: 97 -----------GRRAN-------------------AMWVSTFHSMCVRILRREAKVLDMS 126 Query: 155 SHFAIADEEQSKKLI 169 S F+I D + +K+LI Sbjct: 127 SSFSIYDSDDTKRLI 141 >gi|297158179|gb|ADI07891.1| ATP-dependent DNA helicase II [Streptomyces bingchenggensis BCW-1] Length = 829 Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL A HP +L +T T AA EM RV E++ Sbjct: 88 IVAGAGSGKTRVLTHRIAYLLGARGVHPGQILAITFTNKAAGEMKERVEELV-------- 139 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + N + V T H+ C I+++ + T Sbjct: 140 -----------GPRAN-------------------AMWVSTFHSACVRILRRESKKLGFT 169 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 170 SSFSIYDAADSKRLM 184 >gi|88802036|ref|ZP_01117564.1| ATP-dependent helicase [Polaribacter irgensii 23-P] gi|88782694|gb|EAR13871.1| ATP-dependent helicase [Polaribacter irgensii 23-P] Length = 1052 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 69/129 (53%), Gaps = 10/129 (7%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +A+AGSGKT LV++ L++LL + +L +T T AA EM RVL + +S Sbjct: 11 NASAGSGKTFTLVKQYLKVLLTSEDLFMFQKVLAITFTNKAAGEMKERVLSSLEGFS--- 67 Query: 94 DEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 E + ++ K+ ++ N ++ +++++L IL+ + TI +F I++ F + Sbjct: 68 -EGNTNDLLKMILEETNINQRTVQERSKNILDAILKNYAAFSITTIDSFTHKIIKSFAHD 126 Query: 151 ANITSHFAI 159 ++ +F + Sbjct: 127 LGLSGNFEV 135 >gi|317063871|ref|ZP_07928356.1| ATP-dependent nuclease subunit A [Fusobacterium ulcerans ATCC 49185] gi|313689547|gb|EFS26382.1| ATP-dependent nuclease subunit A [Fusobacterium ulcerans ATCC 49185] Length = 1030 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 17/187 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AG+GKT+ L + L +L +T TK A AE+ R+L+ + L + Sbjct: 14 LKASAGTGKTYRLSLEYVGALCRGIDFKDILVMTFTKKATAEIKERILKFL---KELEEN 70 Query: 96 ILSAEITKIQGKK--PN-KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-FPLEA 151 E K KK P+ + + K + +++ LKV TI AF I ++ Sbjct: 71 TKDGESIKENLKKIYPDMEFNHEKISSIYRDLIQNRDKLKVYTIDAFTNLIFKKAIAPYL 130 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE---TLI 208 I S+ I D+E K LI+ +K + DN ++ +AF LE ++++D+E TLI Sbjct: 131 KIYSYEIIDDDENRKILIKTFQK------IFDNKDDF-RAFKGFLEDNSEKDMENYLTLI 183 Query: 209 SDIISNR 215 ++++ R Sbjct: 184 KNLLNER 190 >gi|57169065|ref|ZP_00368192.1| helicase, putative [Campylobacter coli RM2228] gi|57019523|gb|EAL56214.1| helicase, putative [Campylobacter coli RM2228] Length = 920 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 11/132 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + L+L A + +L LT TK A+ EM R++E S + Sbjct: 9 LEASAGSGKTFALSVRFVALILQGAKINEILALTFTKKASNEMKKRIIETFLNLEKESKK 68 Query: 96 ILSAEITKIQGKKPNK----SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 E+ ++ G + ++ D K L LK+ T +F I++ F L Sbjct: 69 SECKELCELLGCEEDELILLRDKKKQEFL-------RQELKISTFDSFFSRILRAFALNL 121 Query: 152 NITSHFAIADEE 163 ++S F ++E+ Sbjct: 122 GLSSDFDTSEEK 133 >gi|330505760|ref|YP_004382629.1| DNA-dependent helicase II [Pseudomonas mendocina NK-01] gi|328920046|gb|AEB60877.1| DNA-dependent helicase II [Pseudomonas mendocina NK-01] Length = 727 Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 64/163 (39%), Gaps = 49/163 (30%) Query: 19 QTKSEQLLAS----------DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 Q E LLAS P V A AGSGKT +LV R+ L+ A A P ++L Sbjct: 2 QNDPELLLASLNDAQVQAVAAPLGRQLVLAGAGSGKTRVLVHRIAFLIQAIGASPHSILS 61 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ Sbjct: 62 VTFTNKAAAEMRHRIEQMLG--------------------------------------HN 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 P G+ V T H +++ EA + +F I D + ++LI+ Sbjct: 84 PAGMWVGTFHGLAHRLLRAHWQEAGLAENFQILDSDDQQRLIK 126 >gi|322515360|ref|ZP_08068354.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Actinobacillus ureae ATCC 25976] gi|322118587|gb|EFX90815.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Actinobacillus ureae ATCC 25976] Length = 732 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 37/151 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +L R+ L+ + N S +L +T T Sbjct: 7 LDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM HR+ +++ SH H L G+ Sbjct: 65 KAAAEMRHRIEHTLSSSSH---------------------------HRLF-------GMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEE 163 V T H+ +++ L+AN+ F I D E Sbjct: 91 VGTFHSIANRLLRSHYLDANLPQDFQIMDSE 121 >gi|313884107|ref|ZP_07817873.1| ATP-dependent nuclease subunit A [Eremococcus coleocola ACS-139-V-Col8] gi|312620554|gb|EFR31977.1| ATP-dependent nuclease subunit A [Eremococcus coleocola ACS-139-V-Col8] Length = 1321 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 23/153 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV-LEIITAWSHLS 93 V+A+AGSGKT +L++R++ L+ + L +T T+AAA EM R+ + TA + Sbjct: 30 VAASAGSGKTAVLIERIMTKLIYQGYSIEDFLVVTFTEAAAREMKERMSARLKTAVNETL 89 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 D + + QG ++K LL ++T+H+FC +++ F + Sbjct: 90 DPV------EQQG-------LTKQNQLL-------SQANIRTLHSFCLRVVETFYYLTDF 129 Query: 154 TSHFA-IADEEQSKKLIEEAKKSTLASIMLDNN 185 ++F + DE + L +EA ++ + IM+ N Sbjct: 130 EANFQLVTDETRLLLLYQEAWQNLIEKIMVPNG 162 >gi|300858060|ref|YP_003783043.1| ATP-dependent DNA helicase II [Corynebacterium pseudotuberculosis FRC41] gi|300685514|gb|ADK28436.1| ATP-dependent DNA helicase II [Corynebacterium pseudotuberculosis FRC41] Length = 846 Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 87/207 (42%), Gaps = 53/207 (25%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL+ +Q A + + S + A AGSGKT +L +R+ L+ + P +L +T T Sbjct: 61 DLVQGLNPQQQQAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLMRIRGVQPGQILAITFTN 120 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV +HL I S + Sbjct: 121 KAAAEMRERV-------AHLVGPIASR-------------------------------MW 142 Query: 133 VQTIHAFCEAIM-QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H+ C I+ +Q L A + S+F I D + SK+L LA I D N ++KK Sbjct: 143 VSTFHSTCVRILREQAQLVAGLNSNFTIYDSDDSKRL--------LAMISKDMNLDIKKF 194 Query: 192 FYEILEISNDEDIETLISDIISNRTAL 218 +L I L +++IS TA+ Sbjct: 195 TPRLL----GAGISNLKNELISPATAV 217 >gi|302205782|gb|ADL10124.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis C231] gi|308276017|gb|ADO25916.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis I19] Length = 846 Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 87/207 (42%), Gaps = 53/207 (25%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL+ +Q A + + S + A AGSGKT +L +R+ L+ + P +L +T T Sbjct: 61 DLVQGLNPQQQQAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLMRIRGVQPGQILAITFTN 120 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV +HL I S + Sbjct: 121 KAAAEMRERV-------AHLVGPIASR-------------------------------MW 142 Query: 133 VQTIHAFCEAIM-QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H+ C I+ +Q L A + S+F I D + SK+L LA I D N ++KK Sbjct: 143 VSTFHSTCVRILREQAQLVAGLNSNFTIYDSDDSKRL--------LAMISKDMNLDIKKF 194 Query: 192 FYEILEISNDEDIETLISDIISNRTAL 218 +L I L +++IS TA+ Sbjct: 195 TPRLL----GAGISNLKNELISPATAV 217 >gi|220929196|ref|YP_002506105.1| recombination helicase AddA [Clostridium cellulolyticum H10] gi|251764516|sp|B8I2Y2|ADDA_CLOCE RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|219999524|gb|ACL76125.1| recombination helicase AddA [Clostridium cellulolyticum H10] Length = 1248 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 32/200 (16%) Query: 44 KTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100 KT +LV+R++R + +P +LL +T T AAA EM R+ I S Sbjct: 31 KTAVLVERIIRKITDKENPVDIDSLLVVTFTNAAATEMRERIGAAI-----------SDT 79 Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160 I K QG K + +R L++ + TIH+FC +++ I F I Sbjct: 80 IEKNQGSK------NISRQLILL-----NKASITTIHSFCLEVIRSNFQSIEIDPGFKIL 128 Query: 161 DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKL 220 DE ++ L E I D E + F+E+LE + I D++ + + Sbjct: 129 DETEATLLKSETLSDLFEEIYEDAEE--NEDFFELLESYGGNRDDLKIQDMV-----MSI 181 Query: 221 IFFFFSYLWRRKIIEKSLWS 240 F SY W K +E+ + S Sbjct: 182 YSFVQSYPWPEKWLEQQIES 201 >gi|197116744|ref|YP_002137171.1| exodeoxyribonuclease V subunit beta [Geobacter bemidjiensis Bem] gi|197086104|gb|ACH37375.1| exodeoxyribonuclease V, beta subunit [Geobacter bemidjiensis Bem] Length = 1130 Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 21/148 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH--- 91 + A+AG+GKT + LRL+L S +L +T T+AA E+ R+ + + Sbjct: 17 IEASAGTGKTFTIAGVYLRLVLEQKFDVSRILVVTFTEAATKELKERIRNKLKEAENGFL 76 Query: 92 --LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 +D+ L I+G + D S+AR LL + + + + TIH FC+ ++Q P Sbjct: 77 TGATDDFL------IEGLLKSTQDHSEARRLLSSAIRSFDEAAIFTIHGFCQRMLQDNPF 130 Query: 150 EANITSHFAIADEE----QSKKLIEEAK 173 E+ ++ D E Q K L+E A+ Sbjct: 131 ESG-----SLCDTELVTDQGKILMEIAQ 153 >gi|295702782|ref|YP_003595857.1| ATP-dependent nuclease subunit A [Bacillus megaterium DSM 319] gi|294800441|gb|ADF37507.1| ATP-dependent nuclease, subunit A [Bacillus megaterium DSM 319] Length = 1245 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 25/133 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R+++ + P LL T T A+AAEM +R+ Sbjct: 31 VAAAAGSGKTAVLVERIIKKITMGDEPIDVDRLLVATFTNASAAEMRNRI---------- 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 E L E+ K N S + R L +L + T+H+FC +++ + + Sbjct: 81 -GEALEKELKK------NPSSLHLRRQL--NLLNRAS---ISTLHSFCLEVIRTYYYLID 128 Query: 153 ITSHFAIADEEQS 165 + F IAD+ ++ Sbjct: 129 VDPGFRIADDTEA 141 >gi|307257392|ref|ZP_07539162.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864242|gb|EFM96155.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 732 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 37/151 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +L R+ L+ + N S +L +T T Sbjct: 7 LDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM HR+ +++ SH H L G+ Sbjct: 65 KAAAEMRHRIEHTLSSSSH---------------------------HRLF-------GMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEE 163 V T H+ +++ L+AN+ F I D E Sbjct: 91 VGTFHSIANRLLRSHYLDANLPQDFQIMDSE 121 >gi|257469635|ref|ZP_05633727.1| UvrD/REP helicase [Fusobacterium ulcerans ATCC 49185] Length = 1023 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 17/187 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AG+GKT+ L + L +L +T TK A AE+ R+L+ + L + Sbjct: 7 LKASAGTGKTYRLSLEYVGALCRGIDFKDILVMTFTKKATAEIKERILKFL---KELEEN 63 Query: 96 ILSAEITKIQGKK--PN-KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-FPLEA 151 E K KK P+ + + K + +++ LKV TI AF I ++ Sbjct: 64 TKDGESIKENLKKIYPDMEFNHEKISSIYRDLIQNRDKLKVYTIDAFTNLIFKKAIAPYL 123 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE---TLI 208 I S+ I D+E K LI+ +K + DN ++ +AF LE ++++D+E TLI Sbjct: 124 KIYSYEIIDDDENRKILIKTFQK------IFDNKDDF-RAFKGFLEDNSEKDMENYLTLI 176 Query: 209 SDIISNR 215 ++++ R Sbjct: 177 KNLLNER 183 >gi|70733445|ref|YP_263220.1| DNA-dependent helicase II [Pseudomonas fluorescens Pf-5] gi|68347744|gb|AAY95350.1| DNA helicase II [Pseudomonas fluorescens Pf-5] Length = 727 Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + NA P ++L +T T AAAEM HR+ +++ Sbjct: 29 VLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRHRIEQLLGI------ 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P G+ V T H +++ EA ++ Sbjct: 83 --------------------------------NPAGMWVGTFHGLAHRLLRAHWQEAGLS 110 Query: 155 SHFAIADEEQSKKLIE 170 F I D + ++L++ Sbjct: 111 QTFQILDSDDQQRLVK 126 >gi|294497408|ref|YP_003561108.1| ATP-dependent nuclease subunit A [Bacillus megaterium QM B1551] gi|294347345|gb|ADE67674.1| ATP-dependent nuclease, subunit A [Bacillus megaterium QM B1551] Length = 1245 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 25/133 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R+++ + P LL T T A+AAEM +R+ Sbjct: 31 VAAAAGSGKTAVLVERIIKKITMGDEPIDVDRLLVATFTNASAAEMRNRI---------- 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 E L E+ K N S + R L +L + T+H+FC +++ + + Sbjct: 81 -GEALEKELKK------NPSSLHLRRQL--NLLNRAS---ISTLHSFCLEVIRTYYYLID 128 Query: 153 ITSHFAIADEEQS 165 + F IAD+ ++ Sbjct: 129 VDPGFRIADDTEA 141 >gi|330812675|ref|YP_004357137.1| putative DNA helicase II [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380783|gb|AEA72133.1| putative DNA helicase II [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 727 Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + NA P ++L +T T AAAEM HR+ +++ Sbjct: 29 VLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRHRIEQLMGI------ 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P G+ V T H +++ EA ++ Sbjct: 83 --------------------------------NPAGMWVGTFHGLAHRLLRAHWQEAGLS 110 Query: 155 SHFAIADEEQSKKLIE 170 F I D + ++L++ Sbjct: 111 QTFQILDSDDQQRLVK 126 >gi|258512041|ref|YP_003185475.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478767|gb|ACV59086.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1240 Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 22/146 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEMSHRVLEIITAWSH 91 VSA AGSGKT +L +R+ L A P LL +T T+AAA EM R++ + Sbjct: 22 VSAGAGSGKTAVLAERIASL--AEGDPKFRMDQLLVMTFTEAAAEEMRARIVRRLAE--- 76 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 A + G+ S+ H ++ TIH+FC ++++ +EA Sbjct: 77 ------RAAEAEQAGESVKARRFSRLAH-------RANDAQISTIHSFCLSLLRDHAVEA 123 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTL 177 + F + E+ L+ A ++TL Sbjct: 124 GLVPGFRVLSGEEDAVLLRGAAQATL 149 >gi|190150646|ref|YP_001969171.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263993|ref|ZP_07545594.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915777|gb|ACE62029.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870682|gb|EFN02425.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 732 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 37/151 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +L R+ L+ + N S +L +T T Sbjct: 7 LDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM HR+ +++ SH H L G+ Sbjct: 65 KAAAEMRHRIEHTLSSSSH---------------------------HRLF-------GMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEE 163 V T H+ +++ L+AN+ F I D E Sbjct: 91 VGTFHSIANRLLRSHYLDANLPQDFQIMDSE 121 >gi|317501978|ref|ZP_07960162.1| hypothetical protein HMPREF1026_02106 [Lachnospiraceae bacterium 8_1_57FAA] gi|316896658|gb|EFV18745.1| hypothetical protein HMPREF1026_02106 [Lachnospiraceae bacterium 8_1_57FAA] Length = 1197 Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 25/195 (12%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + T+ +Q + R+ VSA AGSGKT +LV+R+++ + P LL +T T+A Sbjct: 3 VKWTEQQQKVIDLRNRNILVSAAAGSGKTAVLVERIIQKITDEQSPVDVDRLLIVTFTEA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ E I K + P + + L+ + + Sbjct: 63 AAAEMKDRIRE---------------AIEKKLEENPGNVHLERQATLVHSA-------PI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+FC +++++ ++ F I ++ + K L ++ L EE Sbjct: 101 TTIHSFCLSVIREHFHVIDLDPGFRIGEDGELKLLKQDVLDELLEECYSKGEEEFLSFTE 160 Query: 194 EILEISNDEDIETLI 208 ND IE +I Sbjct: 161 RFGTGKNDRKIEGII 175 >gi|331088205|ref|ZP_08337124.1| recombination helicase AddA [Lachnospiraceae bacterium 3_1_46FAA] gi|330408449|gb|EGG87915.1| recombination helicase AddA [Lachnospiraceae bacterium 3_1_46FAA] Length = 1197 Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 25/195 (12%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + T+ +Q + R+ VSA AGSGKT +LV+R+++ + P LL +T T+A Sbjct: 3 VKWTEQQQKVIDLRNRNILVSAAAGSGKTAVLVERIIQKITDEQSPVDVDRLLIVTFTEA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ E I K + P + + L+ + + Sbjct: 63 AAAEMKDRIRE---------------AIEKKLEENPGNVHLERQATLVHSA-------PI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+FC +++++ ++ F I ++ + K L ++ L EE Sbjct: 101 TTIHSFCLSVIREHFHVIDLDPGFRIGEDGELKLLKQDVLDELLEECYSKGEEEFLSFTE 160 Query: 194 EILEISNDEDIETLI 208 ND IE +I Sbjct: 161 RFGTGKNDRKIEGII 175 >gi|255657915|ref|ZP_05403324.1| ATP-dependent nuclease subunit A [Mitsuokella multacida DSM 20544] gi|260850107|gb|EEX70114.1| ATP-dependent nuclease subunit A [Mitsuokella multacida DSM 20544] Length = 1283 Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 27/175 (15%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 R+ V+A AGSGKT +LV R++ LLA +L +T T AAA EM R Sbjct: 16 RNILVAAAAGSGKTRVLVDRIIAQLLARECSVDEMLVVTFTNAAATEMRER--------- 66 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 I K KK ++D + L + G + T HAFC+ +++Q Sbjct: 67 ----------IDKALQKKLLETDDRETAAWLERQIVLLSGASICTFHAFCQKVIRQNIDA 116 Query: 151 ANITSHFAIADEEQ----SKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 ++ F +A +++ + ++EE +S S + +E K + + LE +D Sbjct: 117 IDVDPQFRLASDQEMVLMRRDVLEELLES---SYKMPEDEAGKAKWQDFLEFVDD 168 >gi|328948419|ref|YP_004365756.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489] gi|328448743|gb|AEB14459.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489] Length = 675 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 55/137 (40%), Gaps = 38/137 (27%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A AGSGKT ++ R+ +L S +L LT T AA EM R+ E+ Sbjct: 30 AGAGSGKTRVITYRIANMLEKGIPQSQILALTFTNKAAKEMEERIKELT----------- 78 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157 GKK N L V T HAF I++Q + +F Sbjct: 79 --------GKKLN-------------------NLTVSTFHAFGVRILRQEITKLGYRENF 111 Query: 158 AIADEEQSKKLIEEAKK 174 +I DE K LI+E+ + Sbjct: 112 SIYDETDKKALIKESGR 128 >gi|321310796|ref|YP_004193125.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str. Langford 1] gi|319802640|emb|CBY93286.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str. Langford 1] Length = 639 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 33/53 (62%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 P + V A AG+GKT +L++R+LR + PS +L +T T + E+SHR+ Sbjct: 14 PFKPTLVIAGAGTGKTTVLIERILRYIDEGIEPSRILAITFTNKSKDEISHRI 66 >gi|307261810|ref|ZP_07543476.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868628|gb|EFN00439.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 732 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 37/151 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +L R+ L+ + N S +L +T T Sbjct: 7 LDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM HR+ +++ SH H L G+ Sbjct: 65 KAAAEMRHRIEHTLSSSSH---------------------------HRLF-------GMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEE 163 V T H+ +++ L+AN+ F I D E Sbjct: 91 VGTFHSIANRLLRSHYLDANLPQDFQIMDSE 121 >gi|149191373|ref|ZP_01869625.1| DNA-dependent helicase II [Vibrio shilonii AK1] gi|148834790|gb|EDL51775.1| DNA-dependent helicase II [Vibrio shilonii AK1] Length = 723 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P V A AGSGKT +LV R+ L+ + NA P +++ +T T Sbjct: 7 LDGLNDKQREAVAA--PLEHMLVLAGAGSGKTRVLVHRIAWLMSVENASPFSIMSVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ S G+ Sbjct: 65 KAAAEMRGRIEELMMGSSS--------------------------------------GMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 87 NGTFHGICHRILRAHYLDAKLPEDFQILDSDDQQRLLK 124 >gi|27383199|ref|NP_774728.1| hypothetical protein blr8088 [Bradyrhizobium japonicum USDA 110] gi|27356373|dbj|BAC53353.1| blr8088 [Bradyrhizobium japonicum USDA 110] Length = 1099 Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 68/143 (47%), Gaps = 7/143 (4%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 +D + V A AG+GKT +L RV+ L+ + P ++ +T T+ AA E+ HR+ Sbjct: 14 TDLDSTLLVEAGAGTGKTSLLAGRVVMLMASGTSPGAIVAITFTELAAGELRHRIS---- 69 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 ++L + A +++ P+ + R L + E L TIH++C ++ + Sbjct: 70 --TYLEALLGGAVPRELRLCLPDGPTPEQRRSLAVAA-ERLDELTCGTIHSYCHDLLLSY 126 Query: 148 PLEANITSHFAIADEEQSKKLIE 170 +EA I + D + + L + Sbjct: 127 SVEAGIDPGAEVLDADHADFLFD 149 >gi|86135193|ref|ZP_01053775.1| UvrD/REP helicase [Polaribacter sp. MED152] gi|85822056|gb|EAQ43203.1| UvrD/REP helicase [Polaribacter sp. MED152] Length = 1047 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 14/168 (8%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMS 79 ++L+ P +A+AGSGKT LV+ L++LL+ T +L +T T AA EM Sbjct: 3 KKLVVQKPEIFEVYNASAGSGKTFTLVKEYLKVLLSADDIFTFQKILAITFTNKAAGEMK 62 Query: 80 HRVLEIITAWSHLSDE----ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 RVL + +++ + I+S EI ++ +++ ++ IL+ + T Sbjct: 63 ERVLSNLESFAEGEENDLFTIISNEIA-----VDKETIQVRSKKIIDVILQNYSAFSITT 117 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 I +F I++ F + ++ +F + E + L+ EA ++ I D Sbjct: 118 IDSFTHKIIKSFAYDLGLSLNFEV--EMDAVSLLNEAVDVLISKIGTD 163 >gi|313678484|ref|YP_004056224.1| ATP-dependent DNA helicase PcrA [Mycoplasma bovis PG45] gi|312950464|gb|ADR25059.1| ATP-dependent DNA helicase PcrA [Mycoplasma bovis PG45] Length = 734 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 41/160 (25%) Query: 17 ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 +++ ++E L D P R + A AGSGKT +L +++ L+ + P+ +L +T T A Sbjct: 18 LNEEQTEALYYFDGPLR---IIAGAGSGKTRVLTRKIAYLINVLGISPNHILAVTFTNKA 74 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEMS RV + K NK G ++ Sbjct: 75 AAEMSERVKQYTNT-------------------KFNK-----------------GTAEIS 98 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 T H+ C I+++ N+ + F I D+ KK++++ K Sbjct: 99 TFHSLCARILREEAFHINLKNDFQIIDDNDKKKILKDLYK 138 >gi|21223175|ref|NP_628954.1| ATP-dependent DNA helicase II [Streptomyces coelicolor A3(2)] gi|8218198|emb|CAB92660.1| putative ATP-dependent DNA helicase II [Streptomyces coelicolor A3(2)] Length = 831 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL N HP +L +T T AA EM RV +++ Sbjct: 90 IVAGAGSGKTRVLTHRIAHLLAERNVHPGQILAITFTNKAAGEMKERVEQLV-------- 141 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + N + V T H+ C I+++ + T Sbjct: 142 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKKLGFT 171 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 172 SSFSIYDAADSKRLM 186 >gi|89894431|ref|YP_517918.1| hypothetical protein DSY1685 [Desulfitobacterium hafniense Y51] gi|122483028|sp|Q24WW8|ADDA_DESHY RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|89333879|dbj|BAE83474.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 1392 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 31/195 (15%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSH 80 Q A D V+A AGSGKT +LVQR+ + + L +T TKAAAAEM Sbjct: 10 QQAAIDLKGQLLVAAAAGSGKTAVLVQRLFKQITDVDEQVDVDRFLVVTFTKAAAAEMRE 69 Query: 81 RVLEIITAWSHLSDEIL--SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + DE L +AE +++ ++ + +A + T+H+ Sbjct: 70 RIGKAL-------DEALFGAAEPAQVEHLLQQRALLYRA--------------SITTLHS 108 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE- 197 FC +++Q+ + F +ADE ++ L ++ TL + E AF +++ Sbjct: 109 FCMELIRQYFYLIELDPAFRVADEAEADLL----RQDTLEDLFEAYYGEETPAFQSLVDA 164 Query: 198 ISNDEDIETLISDII 212 D D + L++ I+ Sbjct: 165 FGTDRDDQPLMASIL 179 >gi|219668857|ref|YP_002459292.1| recombination helicase AddA [Desulfitobacterium hafniense DCB-2] gi|251764522|sp|B8FXD7|ADDA_DESHD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|219539117|gb|ACL20856.1| recombination helicase AddA [Desulfitobacterium hafniense DCB-2] Length = 1392 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 31/195 (15%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSH 80 Q A D V+A AGSGKT +LVQR+ + + L +T TKAAAAEM Sbjct: 10 QQAAIDLKGQLLVAAAAGSGKTAVLVQRLFKQITDVDEQVDVDRFLVVTFTKAAAAEMRE 69 Query: 81 RVLEIITAWSHLSDEIL--SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + DE L +AE +++ ++ + +A + T+H+ Sbjct: 70 RIGKAL-------DEALFGAAEPAQVEHLLQQRALLYRA--------------SITTLHS 108 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE- 197 FC +++Q+ + F +ADE ++ L ++ TL + E AF +++ Sbjct: 109 FCMELIRQYFYLIELDPAFRVADEAEADLL----RQDTLEDLFEAYYGEETPAFQSLVDA 164 Query: 198 ISNDEDIETLISDII 212 D D + L++ I+ Sbjct: 165 FGTDRDDQPLMASIL 179 >gi|256785725|ref|ZP_05524156.1| ATP-dependent DNA helicase II [Streptomyces lividans TK24] gi|289769617|ref|ZP_06528995.1| ATP-dependent DNA helicase PcrA [Streptomyces lividans TK24] gi|289699816|gb|EFD67245.1| ATP-dependent DNA helicase PcrA [Streptomyces lividans TK24] Length = 831 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL N HP +L +T T AA EM RV +++ Sbjct: 90 IVAGAGSGKTRVLTHRIAHLLAERNVHPGQILAITFTNKAAGEMKERVEQLV-------- 141 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + N + V T H+ C I+++ + T Sbjct: 142 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKKLGFT 171 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 172 SSFSIYDAADSKRLM 186 >gi|188591039|ref|YP_001795639.1| ATP-dependent DNA helicase [Cupriavidus taiwanensis LMG 19424] gi|170937933|emb|CAP62917.1| putative ATP-dependent DNA helicase [Cupriavidus taiwanensis LMG 19424] Length = 702 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 31/49 (63%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT+ L RV L+L A P +L LT ++ AAAEM RV I+ Sbjct: 49 AGAGSGKTNTLAHRVAHLVLGGADPRRILLLTFSRRAAAEMGRRVERIV 97 >gi|218134063|ref|ZP_03462867.1| hypothetical protein BACPEC_01953 [Bacteroides pectinophilus ATCC 43243] gi|217991438|gb|EEC57444.1| hypothetical protein BACPEC_01953 [Bacteroides pectinophilus ATCC 43243] Length = 163 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 31/167 (18%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPST------LLCLTHTKAAAAEMSHRVLEI 85 ++ VSA AGSGKT +LV+R++R++ P L+ +T T AAAA+M R I Sbjct: 6 KNILVSAAAGSGKTAVLVERIIRMI---TDPDNHVDIERLVVVTFTNAAAAQMRER---I 59 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 A + +E N SD + R L + + ++ TI +FC I++ Sbjct: 60 GAALESMIEE--------------NPSDRNLQRQLAMIHMA-----QITTIDSFCLNILR 100 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + +I F IAD+ + + + + L NE+ + + Sbjct: 101 NNYMNLDIDPGFRIADQGELELIKADVMGELLEKYYAGGNEDFLRTY 147 >gi|269962274|ref|ZP_06176626.1| DNA helicase II [Vibrio harveyi 1DA3] gi|269832977|gb|EEZ87084.1| DNA helicase II [Vibrio harveyi 1DA3] Length = 724 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + + P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQSSPFSIMSVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E+ ++ + GG+ Sbjct: 66 KAAAEMRGRIEEL--------------------------------------MMGSAGGMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 88 NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLLK 125 >gi|284052478|ref|ZP_06382688.1| ATP-dependent nuclease subunit A [Arthrospira platensis str. Paraca] gi|291571372|dbj|BAI93644.1| putative helicase [Arthrospira platensis NIES-39] Length = 1070 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 30/165 (18%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAA 75 +S T ++Q A+ P +S V+A AG+GKT++LV+R L L P ++ +T T+ AA Sbjct: 1 MSLTNAQQAAATSP-QSIMVTAGAGTGKTYMLVERYLYYLREKGLSPLEIVAVTFTEKAA 59 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ R+ ++++ + PN+ D IL + T Sbjct: 60 QELRSRIR------------------SQVRQQLPNRPD----------ILAELEAAPIST 91 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 IHA I ++ P A + + F I + + K + E ++ L+ + Sbjct: 92 IHALASRICREHPQAAKVPADFQILEYLEGKIWLYEGLETALSKL 136 >gi|67624459|ref|XP_668512.1| helicase [Cryptosporidium hominis TU502] gi|54659721|gb|EAL38286.1| helicase-like protein nhl [Cryptosporidium hominis] Length = 916 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 14/140 (10%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 S + A G+GKT L R++R LL+ P +L LT T+ AA E+ RV I+ + S Sbjct: 49 SLLIVAGPGTGKTATLTSRIVRFLLSGYSP--ILALTFTRKAANELKSRV-SIVYSSSSK 105 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 S +I K+D+ + L + TP + + TIH+FC +++++ Sbjct: 106 IIYSKSKQI---------KNDLRNEKSL-SDFVPTPE-IFIGTIHSFCWKLLKEYGSFIG 154 Query: 153 ITSHFAIADEEQSKKLIEEA 172 + AI D+E + KL++ Sbjct: 155 LPKDIAIIDKELAIKLLKSC 174 >gi|306821434|ref|ZP_07455038.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550509|gb|EFM38496.1| conserved hypothetical protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 1587 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMS 79 K ++++ D ++ V A AGSGKT +LV ++ LLL + LL LT ++AAA E Sbjct: 1035 KQKEIINDDNSQFITVLAGAGSGKTKVLVHKLASLLLMEDVKAEQLLMLTFSRAAATEFK 1094 Query: 80 HRVLEIITAWSHLSD 94 R++E+I ++ D Sbjct: 1095 KRLIELIGDGAYFVD 1109 >gi|327540076|gb|EGF26671.1| ATP-dependent DNA helicase, UvrD/REP family [Rhodopirellula baltica WH47] Length = 621 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 + +D + ++ + A +PT V A+AG+GKT+ L R+L++LL A P T+L T Sbjct: 41 PDELDFVVESPTTLREAFEPT---LVRASAGTGKTYQLTARLLKILLTGAPPETILATTF 97 Query: 71 TKAAAAEMSHRVL 83 T+ AA E+ RVL Sbjct: 98 TRKAAGEILERVL 110 >gi|284006602|emb|CBA71863.1| DNA helicase II / ATP-dependent DNA helicase [Arsenophonus nasoniae] Length = 723 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 43/155 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + + A AGSGKT +LV R+ LL + P +++ +T T AAAEM HR+ ++ Sbjct: 24 PRTNMLILAGAGSGKTRVLVHRIAWLLAVDKVSPFSIMAVTFTNKAAAEMRHRINALLG- 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 SD+ GG+ V T H +++ Sbjct: 83 ----SDQ---------------------------------GGMWVGTFHGLAHRLLRAHY 105 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 L+AN+ F I D + +L+ + + +I LD Sbjct: 106 LDANLVQDFQILDSDDQYRLL----RRIIKAINLD 136 >gi|261250055|ref|ZP_05942632.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio orientalis CIP 102891] gi|260939559|gb|EEX95544.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio orientalis CIP 102891] Length = 723 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 41/157 (26%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P +A V A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 7 LDGLNDKQREAVAA--PLENALVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ EI ++ + G+ Sbjct: 65 KAAAEMRGRIEEI--------------------------------------MMGSASGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T H C I++ L+A + F I D + +L+ Sbjct: 87 NGTFHGICHRILRAHYLDATLPEDFQIIDTDDQVRLL 123 >gi|261493834|ref|ZP_05990348.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310537|gb|EEY11726.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 1174 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 17/158 (10%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPST---LLCLTHTKAAAAEMSHRVLEII 86 +S + A+AG+GKT + LRLLL +P T +L +T TKAA E+ +R+ + I Sbjct: 12 NKSVLIEASAGTGKTFTIANLYLRLLLGIGCNPLTVEQILVVTFTKAATEELKNRIRKNI 71 Query: 87 TAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ----------T 135 + L D+ E+ + + N +++ L+ I E L + T Sbjct: 72 QQCADFLKDQADGLEVESTKSYRNNLDFLAQIYPLIPNIHEALLRLSIAEREIDTASVFT 131 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQS--KKLIEE 171 IH FC+ ++ QF E+ + + + KKL EE Sbjct: 132 IHGFCQKMLVQFAFESGVRFDLDLQPNQSDLLKKLSEE 169 >gi|315503768|ref|YP_004082655.1| uvrd/rep helicase [Micromonospora sp. L5] gi|315410387|gb|ADU08504.1| UvrD/REP helicase [Micromonospora sp. L5] Length = 1134 Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 34/178 (19%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLL 66 E + + L + T+ + + + P V A AGSGKT + RV+ L+AN++ P +L Sbjct: 29 ELARLLRLPAPTREQAAIIAAPVEPLLVVAGAGSGKTETMAARVM-WLVANSYVRPEHIL 87 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 LT T+ AA E++HRV + D+++ QG+ P+ ++ Sbjct: 88 GLTFTRKAAGELAHRVRTRL-------DQLIRR--LGRQGRDPHDDPLA----------- 127 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 G V T H++ I +T H A E + +L+ EA + L +++ N Sbjct: 128 --GEPTVSTYHSYAGRI---------VTEHGLRAGYEPTTRLLTEASRWQLVDLLVRN 174 >gi|302869750|ref|YP_003838387.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029] gi|302572609|gb|ADL48811.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029] Length = 1134 Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 34/178 (19%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLL 66 E + + L + T+ + + + P V A AGSGKT + RV+ L+AN++ P +L Sbjct: 29 ELARLLRLPAPTREQAAIIAAPVEPLLVVAGAGSGKTETMAARVM-WLVANSYVRPEHIL 87 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 LT T+ AA E++HRV + D+++ QG+ P+ ++ Sbjct: 88 GLTFTRKAAGELAHRVRTRL-------DQLIRR--LGRQGRDPHDDPLA----------- 127 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 G V T H++ I +T H A E + +L+ EA + L +++ N Sbjct: 128 --GEPTVSTYHSYAGRI---------VTEHGLRAGYEPTTRLLTEASRWQLVDLLVRN 174 >gi|303229716|ref|ZP_07316502.1| ATP-dependent nuclease subunit A [Veillonella atypica ACS-134-V-Col7a] gi|302515613|gb|EFL57569.1| ATP-dependent nuclease subunit A [Veillonella atypica ACS-134-V-Col7a] Length = 1273 Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 84/179 (46%), Gaps = 28/179 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV-LEIITAWSH 91 V+A AGSGKT +LV+R++ L +P L+ +T TKAAAAEMS R+ + + A Sbjct: 28 VAAAAGSGKTAVLVERIITRLKDMENPLSVQELMVVTFTKAAAAEMSARIGVALAKAMES 87 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 D+ L A + + P+ + T+H+FC+ +++ + + Sbjct: 88 TDDKSLQARLERQLNLLPSA--------------------HISTLHSFCQWVIRSYFYKL 127 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISD 210 +I I +E + L K+ L +++ + E + +++ + +D+ + + D Sbjct: 128 DIPPTARIGNEAEMALL----KQEVLENLLKEAYEHNEYGIFDLSDFFSDDKSDAGLQD 182 >gi|302330341|gb|ADL20535.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis 1002] Length = 785 Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 54/185 (29%), Positives = 78/185 (42%), Gaps = 52/185 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ L+ + P +L +T T AAAEM RV +HL Sbjct: 22 IVAGAGSGKTAVLTRRIAYLMRIRGVQPGQILAITFTNKAAAEMRERV-------AHLVG 74 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM-QQFPLEANI 153 I S + V T H+ C I+ +Q L A + Sbjct: 75 PIASR-------------------------------MWVSTFHSTCVRILREQAQLVAGL 103 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 S+F I D + SK+L LA I D N ++KK +L I L +++IS Sbjct: 104 NSNFTIYDSDDSKRL--------LAMISKDMNLDIKKFTPRLL----GAGISNLKNELIS 151 Query: 214 NRTAL 218 TA+ Sbjct: 152 PATAV 156 >gi|260774493|ref|ZP_05883407.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio metschnikovii CIP 69.14] gi|260610620|gb|EEX35825.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio metschnikovii CIP 69.14] Length = 718 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 41/157 (26%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 2 LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLISVEQASPFSVMSVTFTN 59 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E+ +QG + G+ Sbjct: 60 KAAAEMRGRIEEL------------------MQG--------------------SASGMW 81 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T H C I++ L+AN+ F I D E +L+ Sbjct: 82 NGTFHGICHRILRAHYLDANLPEDFQILDSEDQLRLL 118 >gi|219871258|ref|YP_002475633.1| DNA-dependent helicase II [Haemophilus parasuis SH0165] gi|219691462|gb|ACL32685.1| DNA-dependent helicase II [Haemophilus parasuis SH0165] Length = 727 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 37/158 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +L R+ L+ + N S +L +T T Sbjct: 7 LDGLNDKQREAVAA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGVENIAESNILAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM HR+ + S SD H L G+ Sbjct: 65 KAAAEMRHRIEYTL---SQSSD------------------------HRLF-------GMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 V T H+ +++ L+AN+ F I D E ++LI+ Sbjct: 91 VGTFHSIANRLLRSHYLDANLPQDFQIMDTEDQQRLIK 128 >gi|91974519|ref|YP_567178.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5] gi|91680975|gb|ABE37277.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5] Length = 1115 Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 7/131 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT ++ RV L P + +T T+ AA+E+ R+ + TA S L D Sbjct: 23 VEAGAGSGKTSVMAGRVAVLFGKGVEPKNIAAITFTELAASELRLRIEKFTTALS-LGD- 80 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + ++T Q + KA L ++ L TIH F +++++ +P EA I Sbjct: 81 -VPPDLT--QAFPEGVPEAEKAN--LYRACQSFDQLACTTIHGFAQSLIKPYPAEAGIDP 135 Query: 156 HFAIADEEQSK 166 I D ++++ Sbjct: 136 GADIVDPDEAE 146 >gi|254362549|ref|ZP_04978650.1| exodeoxyribonuclease V [Mannheimia haemolytica PHL213] gi|153094150|gb|EDN75046.1| exodeoxyribonuclease V [Mannheimia haemolytica PHL213] Length = 1174 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 17/158 (10%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPST---LLCLTHTKAAAAEMSHRVLEII 86 +S + A+AG+GKT + LRLLL +P T +L +T TKAA E+ +R+ + I Sbjct: 12 NKSVLIEASAGTGKTFTIANLYLRLLLGIGCNPLTVEQILVVTFTKAATEELKNRIRKNI 71 Query: 87 TAWSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ----------T 135 + L D+ E+ + + N +++ L+ I E L + T Sbjct: 72 QQCADFLKDQADGLEVESTKSYRNNLDFLAQIYPLIPNIHEALLRLSIAEREIDTASVFT 131 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQS--KKLIEE 171 IH FC+ ++ QF E+ + + + KKL EE Sbjct: 132 IHGFCQKMLVQFAFESGVRFDLDLQPNQSDLLKKLSEE 169 >gi|16801431|ref|NP_471699.1| hypothetical protein lin2368 [Listeria innocua Clip11262] gi|81595220|sp|Q929A9|ADDA_LISIN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|16414891|emb|CAC97595.1| lin2368 [Listeria innocua Clip11262] Length = 1235 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 34/182 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV R++ L+ N + LL +T T +AAEM +R+ + Sbjct: 31 VAAAAGSGKTAVLVTRIIEKLINETENLNVDELLIVTFTNVSAAEMKYRIGK-------- 82 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 S E +Q P + K LL + T+H+FC I+++ EA+ Sbjct: 83 -----SLEEALVQN--PESVHLKKQVALL-------NYASISTLHSFCLEIIRKHYFEAD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTL-ASIMLDNNEELKKAFYEILE----ISNDEDIETL 207 I +F + + +S + +E + L ++NNE F+ ++E +D ++ TL Sbjct: 129 IDPNFRLIEPIESSMIRDEVLEDLLEKEYSIENNE----GFFHLVESFTGDRSDAELHTL 184 Query: 208 IS 209 IS Sbjct: 185 IS 186 >gi|170761478|ref|YP_001786710.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A3 str. Loch Maree] gi|169408467|gb|ACA56878.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A3 str. Loch Maree] Length = 855 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 44/138 (31%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 ++AG+GKT L R+ ++ N A +LCLT T A EM +++E + Sbjct: 25 SSAGTGKTKTLSMRIGNIIAKNLALGEQILCLTFTNRACKEMKEKIIETV---------- 74 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIHAFC-EAIMQQFPLEANI 153 GK+ GLK V+T H+FC + I ++ +I Sbjct: 75 ---------GKE---------------------GLKVTVKTFHSFCFDVIKKEAKKNTDI 104 Query: 154 TSHFAIADEEQSKKLIEE 171 +S F I DEE +K++I E Sbjct: 105 SSDFTIYDEEDTKEIISE 122 >gi|261495059|ref|ZP_05991526.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309301|gb|EEY10537.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str. OVINE] Length = 1174 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 17/158 (10%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPST---LLCLTHTKAAAAEMSHRVLEII 86 +S + A+AG+GKT + LRLLL +P T +L +T TKAA E+ +R+ + I Sbjct: 12 NKSVLIEASAGTGKTFTIANLYLRLLLGIGCNPLTVEQILVVTFTKAATEELKNRIRKNI 71 Query: 87 TAWSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ----------T 135 + L D+ E+ + + N +++ L+ I E L + T Sbjct: 72 QQCADFLKDQADGLEVESTKSYRNNLDFLAQIYPLIPNIHEALLRLSIAEREIDTASVFT 131 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQS--KKLIEE 171 IH FC+ ++ QF E+ + + + KKL EE Sbjct: 132 IHGFCQKMLVQFAFESGVRFDLDLQPNQSDLLKKLSEE 169 >gi|56419217|ref|YP_146535.1| ATP-dependent deoxyribonuclease subunit A [Geobacillus kaustophilus HTA426] gi|81558057|sp|Q5L263|ADDA_GEOKA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|56379059|dbj|BAD74967.1| ATP-dependent deoxyribonuclease subunit A [Geobacillus kaustophilus HTA426] Length = 1242 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 25/136 (18%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ + A LL +T T AAAAEM R+ Sbjct: 27 RDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDRLLVVTFTNAAAAEMKARI------ 80 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 E L E+ K+P+ + + LL P + T+H+FC +++++ Sbjct: 81 -----GEALEREL----AKRPHSLHLRRQLSLL------PRA-AISTLHSFCLDVIRKYY 124 Query: 149 LEANITSHFAIADEEQ 164 ++ F IADE + Sbjct: 125 YLLDLDPSFRIADETE 140 >gi|331702530|ref|YP_004399489.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus buchneri NRRL B-30929] gi|329129873|gb|AEB74426.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus buchneri NRRL B-30929] Length = 1252 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 27/186 (14%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP--STLLCLTHTKAAAAEMSHRVLEIIT 87 P + VSA+AGSGKT +LV R++ ++ N H LL +T T AAA EM R+ Sbjct: 17 PAGNVLVSASAGSGKTRVLVDRIID-MVKNQHVDIDQLLVVTFTNAAAKEMRQRL----- 70 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 + L +E A ++ K R L+T ++ + T+ A+C+ ++ ++ Sbjct: 71 -QAALREEFNQA------------AEAEKGR--LLTQIQKVAVADITTMDAYCQKLVGRY 115 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIET 206 I +F I ++ K+L+++ + + N+E+ +F + E SND + Sbjct: 116 YYLLGIDPNFRILADDTEKQLLKDQVWGAVREDLYGNDED--GSFARLTENFSNDRSDDG 173 Query: 207 LISDII 212 L +D+I Sbjct: 174 L-ADLI 178 >gi|313675649|ref|YP_004053645.1| uvrd/rep helicase [Marivirga tractuosa DSM 4126] gi|312942347|gb|ADR21537.1| UvrD/REP helicase [Marivirga tractuosa DSM 4126] Length = 1084 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 2/114 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 ++AGSGKT L + L+L N H +L +T T A EM R+++ + +S + Sbjct: 12 SSAGSGKTFTLTREYLKLAFQNPDHFKKILAVTFTNKATQEMKERIIQNLFDFSRKTPSD 71 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + ++ I + K++ LL++IL VQTI F + +M+ F E Sbjct: 72 MGEQLKSILDLTDTEL-KEKSQKLLVSILHNYSRFSVQTIDRFFQNVMRSFARE 124 >gi|307332408|ref|ZP_07611476.1| ATP-dependent DNA helicase PcrA [Streptomyces violaceusniger Tu 4113] gi|306881942|gb|EFN13060.1| ATP-dependent DNA helicase PcrA [Streptomyces violaceusniger Tu 4113] Length = 824 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL A HP +L +T T AA EM RV E++ Sbjct: 93 IVAGAGSGKTRVLTHRIAYLLGARGTHPGQILAITFTNKAAGEMKERVEELV-------- 144 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + N + V T H+ C I+++ + T Sbjct: 145 -----------GPRAN-------------------AMWVSTFHSACVRILRRESKKLGFT 174 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 175 SSFSIYDAADSKRLM 189 >gi|300115039|ref|YP_003761614.1| UvrD/REP helicase [Nitrosococcus watsonii C-113] gi|299540976|gb|ADJ29293.1| UvrD/REP helicase [Nitrosococcus watsonii C-113] Length = 717 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 66/166 (39%), Gaps = 45/166 (27%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78 K+++ A+ P V A AGSGKT +LV R+ L+ + P LL +T T AA EM Sbjct: 11 NKAQREAAAAPPGHHLVLAGAGSGKTRVLVHRMAWLIRSQGIAPVNLLAVTFTNKAAGEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIH 137 R+ E +LETP GG+ V T H Sbjct: 71 RGRIEE---------------------------------------LLETPAGGMWVGTFH 91 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 +++ EA + F I D E +LI + L ++ LD Sbjct: 92 GIAHRLLRAHWQEAQLPQDFQILDSEDQYRLI----RRILQNLNLD 133 >gi|254519350|ref|ZP_05131406.1| helicase [Clostridium sp. 7_2_43FAA] gi|226913099|gb|EEH98300.1| helicase [Clostridium sp. 7_2_43FAA] Length = 872 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 40/155 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 + + L+ ++ + + A+AG+GKT+ L R+ ++ +N A S +LC+T T A AEM Sbjct: 4 NQEQALVVNELENNILLLASAGTGKTNTLSSRISNIIKSNKAKASEILCITFTNKACAEM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +I+ E + ++T H+ Sbjct: 64 RERIEKIVG--------------------------------------EEAKDITIRTFHS 85 Query: 139 FC-EAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 FC + I +I + F + DEE S+++I+E Sbjct: 86 FCYDLIKSDAKKRTDIFTDFIVFDEEDSREIIKEC 120 >gi|150024269|ref|YP_001295095.1| ATP-dependent DNA helicase UvrD [Flavobacterium psychrophilum JIP02/86] gi|149770810|emb|CAL42275.1| Probable ATP-dependent DNA helicase, UvrD/REP family [Flavobacterium psychrophilum JIP02/86] Length = 1052 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/155 (24%), Positives = 78/155 (50%), Gaps = 9/155 (5%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEII 86 P S + +A+AGSGKT+ LV+ L+++L H +L +T T A EM R+++ + Sbjct: 4 PAFSIY-NASAGSGKTYTLVKEYLKIILKAKHNDAYKNILAITFTNKAVFEMKTRIIDSL 62 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFCEAI 143 +S + S ++ GK+ N + +KA+ ++ I+ + TI F + Sbjct: 63 FDFSKDNPTEKSIQLMNDLGKEINLNQSQIKTKAQSIIKNIIHNYAAFDISTIDKFTHKV 122 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 ++ F + + F ++ + ++ L++EA + +A Sbjct: 123 IRAFAFDLGLPITFDVSLD--TENLLQEAVDAIVA 155 >gi|57242577|ref|ZP_00370515.1| helicase, putative [Campylobacter upsaliensis RM3195] gi|57016862|gb|EAL53645.1| helicase, putative [Campylobacter upsaliensis RM3195] Length = 909 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 13/134 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + L+L A +L +T TK A EM RV+E + E Sbjct: 10 LEASAGSGKTFALSMRFVALILNGAKIDEILAITFTKKATNEMKKRVIENFLTFDKKEAE 69 Query: 96 ILSAEITKIQGKKPNK----SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 + E+ K+ GK + D K L LK+ T A I++ F L Sbjct: 70 --TKELCKLLGKDKEELIRLRDAKKEEFL-------RKNLKIYTFDALFSQILRSFALNL 120 Query: 152 NITSHFAIADEEQS 165 + S F + Q Sbjct: 121 GLMSDFESVENSQD 134 >gi|319891943|ref|YP_004148818.1| ATP-dependent nuclease, subunit A [Staphylococcus pseudintermedius HKU10-03] gi|317161639|gb|ADV05182.1| ATP-dependent nuclease, subunit A [Staphylococcus pseudintermedius HKU10-03] Length = 1214 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 28/170 (16%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R++ R+L LL +T T +A EM HRV Sbjct: 28 VAAAAGSGKTAVLVERIIQRILRDGIDVDRLLVVTFTNLSAREMKHRV------------ 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A I + + P+ + R + ++ T+H+FC ++QQ +I Sbjct: 76 ---EARIQQAAIEDPSNQHLKNQRTKIHQA-------QISTLHSFCLRLIQQHYDVLDID 125 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDED 203 +F A E ++ L+EE + + + + L F + E IS D D Sbjct: 126 PNFRTASEVENVLLLEE----VIDDVFEKHYDRLDPTFVTLTEHISTDRD 171 >gi|297201841|ref|ZP_06919238.1| ATP-dependent DNA helicase PcrA [Streptomyces sviceus ATCC 29083] gi|197717318|gb|EDY61352.1| ATP-dependent DNA helicase PcrA [Streptomyces sviceus ATCC 29083] Length = 826 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL N HP +L +T T AA EM RV +++ Sbjct: 89 IVAGAGSGKTRVLTHRIAHLLGERNVHPGQILAITFTNKAAGEMKERVEQLV-------- 140 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + N + V T H+ C I+++ + T Sbjct: 141 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKKLGFT 170 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 171 SSFSIYDAADSKRLM 185 >gi|124486140|ref|YP_001030756.1| hypothetical protein Mlab_1322 [Methanocorpusculum labreanum Z] gi|124363681|gb|ABN07489.1| UvrD/REP helicase [Methanocorpusculum labreanum Z] Length = 1057 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 30/142 (21%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLL-----ANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 S V+A AG+GKT +L +R + L + S +L LT+T AAAEM ++ Sbjct: 18 SVCVTAGAGTGKTFLLTKRYIAALTYRRETMHTGASDILALTYTDKAAAEMRTKI----- 72 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 E+ K + P L + E+ + T H FC +++++F Sbjct: 73 ----------GRELKKAAEEDPE----------LEGVWESFSRCSISTFHGFCLSLLKEF 112 Query: 148 PLEANITSHFAIADEEQSKKLI 169 EA + + F++ DE + +L+ Sbjct: 113 AYEAGLDAGFSVMDELDTHELV 134 >gi|325479866|gb|EGC82951.1| putative ATP-dependent nuclease subunit A [Anaerococcus prevotii ACS-065-V-Col13] Length = 1121 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 29/142 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA AGSGKT +LV R++RL++ + S + +T T A+ EM R+ + L + Sbjct: 23 VSAAAGSGKTSVLVTRIIRLVIDDKKDISKFIIVTFTNKASVEMKDRI------RAALEE 76 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK---VQTIHAFCEAIMQQ-FPLE 150 E+ GK + +D S I E LK V+T+H+FC ++++ F Sbjct: 77 EL---------GK--DGADYS-------FIKEQIKNLKYAQVKTLHSFCADMLRENFYYF 118 Query: 151 ANITSHFAIADEEQSKKLIEEA 172 N++ F + + S L+ EA Sbjct: 119 DNLSPSFKVISDNTSTILMAEA 140 >gi|303250592|ref|ZP_07336789.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252961|ref|ZP_07534849.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650580|gb|EFL80739.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859599|gb|EFM91624.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 732 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 37/151 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E ++A P + V A AGSGKT +L R+ L+ + N S +L +T T Sbjct: 7 LDGLNDKQREAVVA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM HR+ +++ SH H L G+ Sbjct: 65 KAAAEMRHRIEHTLSSSSH---------------------------HRLF-------GMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEE 163 V T H+ +++ L+A++ F I D E Sbjct: 91 VGTFHSIANRLLRSHYLDADLPQDFQIMDSE 121 >gi|51893311|ref|YP_076002.1| ATP-dependent deoxyribonuclease subunit A [Symbiobacterium thermophilum IAM 14863] gi|81610460|sp|Q67MD5|ADDA_SYMTH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|51857000|dbj|BAD41158.1| ATP-dependent deoxyribonuclease subunit A [Symbiobacterium thermophilum IAM 14863] Length = 1371 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 41/210 (19%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++R L+ P LL +T T+AAA EM R+ Sbjct: 26 VAAAAGSGKTAVLVERIIRRLVDERDPLDVDQLLVVTFTEAAATEMRDRI---------- 75 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 A + P + + LL G + T+H+FC ++++Q+ Sbjct: 76 -----GAALQAALAGNPENERLQRQLALL-------GRASISTLHSFCLSLVRQYFYRLG 123 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI----SNDEDIETLI 208 + ++ E ++ L E A +EE F+ +++ +DE + L+ Sbjct: 124 LDPAVSVMGEHEALLLRHEVLDQLFARRF---DEEEDGPFHALVDRYGGGRDDEGLRNLV 180 Query: 209 SDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 I + AL W + +E+SL Sbjct: 181 LAIYDHMQALP---------WPDQWLEESL 201 >gi|302536344|ref|ZP_07288686.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. C] gi|302445239|gb|EFL17055.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. C] Length = 825 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 55/135 (40%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL A N HP +L +T T AA EM RV ++ Sbjct: 86 IVAGAGSGKTRVLTHRIGHLLSARNVHPGQILAITFTNKAAGEMKERVEGLV-------- 137 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + N + V T H+ C I+++ T Sbjct: 138 -----------GPRAN-------------------AMWVSTFHSACVRILRRESKRLGFT 167 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 168 SSFSIYDAADSKRLM 182 >gi|154249214|ref|YP_001410039.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1] gi|154153150|gb|ABS60382.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1] Length = 1130 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 47/214 (21%), Positives = 98/214 (45%), Gaps = 27/214 (12%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQR---VLRLLLANAHPST---LLCLTHTKAAAAEM 78 ++ +P + ++SA+AG+GKT+ L +L +P +L +T T AA EM Sbjct: 11 IVRENPNCNYFISASAGTGKTYTLTNYYMGILEYYEKENNPDIVDGILAVTFTNKAANEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R++ + + ++I S+ ++ + K S+MS+A + TI + Sbjct: 71 KERIM------NKVREKITSSSVSNLAYWKRVYSNMSRA--------------VISTIDS 110 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC ++ + + A + +F I ++ + K+I+ A + + I E+L+ +L Sbjct: 111 FCRRVLIEQNIYAGVDPNFTIINDLKQLKIIDSASRQAM-EIAFKVYEDLEIPLSPMLSS 169 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRK 232 + IE I ++ + ++ +F +WR K Sbjct: 170 ERRKRIEGYIKELKEIKDSIIDLFELVGDVWRVK 203 >gi|303253078|ref|ZP_07339228.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248354|ref|ZP_07530377.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648063|gb|EFL78269.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855092|gb|EFM87272.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 732 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 37/151 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E ++A P + V A AGSGKT +L R+ L+ + N S +L +T T Sbjct: 7 LDGLNDKQREAVVA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM HR+ +++ SH H L G+ Sbjct: 65 KAAAEMRHRIEHTLSSSSH---------------------------HRLF-------GMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEE 163 V T H+ +++ L+A++ F I D E Sbjct: 91 VGTFHSIANRLLRSHYLDADLPQDFQIMDSE 121 >gi|254491461|ref|ZP_05104640.1| UvrD/REP helicase domain protein [Methylophaga thiooxidans DMS010] gi|224462939|gb|EEF79209.1| UvrD/REP helicase domain protein [Methylophaga thiooxydans DMS010] Length = 723 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 SE ++ +++ + E + A P A + A AGSGKT +LV R+ L+ A + P+ +L +T Sbjct: 4 SELLNDLNKPQREAVAA--PLGHARILAGAGSGKTRVLVHRIAWLIQAEDFSPANILAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ +I+ PG Sbjct: 62 FTNKAAAEMRGRIEDILGY--------------------------------------PPG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ V T H +++ +A++ F I D + ++I+ Sbjct: 84 GMWVGTFHGLAHRLLRSHWKDADLPQSFQILDSDDQLRMIK 124 >gi|32473647|ref|NP_866641.1| helicase [Rhodopirellula baltica SH 1] gi|32444183|emb|CAD74180.1| probable helicase [Rhodopirellula baltica SH 1] Length = 924 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 + +D + ++ + A +PT V A+AG+GKT+ L R+L++LL A P T+L T Sbjct: 41 PDELDFVVESPTTLREAFEPT---LVRASAGTGKTYQLTARLLKILLTGAPPETILATTF 97 Query: 71 TKAAAAEMSHRVL 83 T+ AA E+ RVL Sbjct: 98 TRKAAGEILERVL 110 >gi|297531123|ref|YP_003672398.1| recombination helicase AddA [Geobacillus sp. C56-T3] gi|297254375|gb|ADI27821.1| recombination helicase AddA [Geobacillus sp. C56-T3] Length = 1242 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 25/136 (18%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ + A LL +T T AAAAEM R+ Sbjct: 27 RDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDRLLVVTFTNAAAAEMKARI------ 80 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 E L E+ K+P+ + + LL P + T+H+FC +++++ Sbjct: 81 -----GEALEREL----AKRPHSLHLRRQLSLL------PRA-AISTLHSFCLDVIRKYY 124 Query: 149 LEANITSHFAIADEEQ 164 ++ F IADE + Sbjct: 125 YLLDLDPSFRIADETE 140 >gi|77164123|ref|YP_342648.1| DNA-dependent helicase II [Nitrosococcus oceani ATCC 19707] gi|254435365|ref|ZP_05048872.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27] gi|76882437|gb|ABA57118.1| ATP-dependent DNA helicase UvrD [Nitrosococcus oceani ATCC 19707] gi|207088476|gb|EDZ65748.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27] Length = 717 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 66/166 (39%), Gaps = 45/166 (27%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78 K+++ A+ P V A AGSGKT +LV R+ L+ + P LL +T T AA EM Sbjct: 11 NKAQREAAAAPPGHHLVLAGAGSGKTRVLVHRMAWLIRSQGIAPVNLLAVTFTNKAAGEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIH 137 R+ E +LETP GG+ V T H Sbjct: 71 RGRIEE---------------------------------------LLETPVGGMWVGTFH 91 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 +++ EA + F I D E +LI + L ++ LD Sbjct: 92 GIAHRLLRAHWQEAQLPQDFQILDSEDQYRLI----RRILQNLNLD 133 >gi|323464966|gb|ADX77119.1| exonuclease RexA [Staphylococcus pseudintermedius ED99] Length = 1214 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 28/170 (16%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R++ R+L LL +T T +A EM HRV Sbjct: 28 VAAAAGSGKTAVLVERIIQRILRDGIDVDRLLVVTFTNLSAREMKHRV------------ 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A I + + P+ + R + ++ T+H+FC ++QQ +I Sbjct: 76 ---EARIQQAAIEDPSNQHLKNQRTKIHQA-------QISTLHSFCLRLIQQHYDVLDID 125 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDED 203 +F A E ++ L+EE + + + + L F + E IS D D Sbjct: 126 PNFRTASEVENVLLLEE----VIDDVFEKHYDRLDPTFVTLTEHISTDRD 171 >gi|165976747|ref|YP_001652340.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876848|gb|ABY69896.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 732 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 37/151 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E ++A P + V A AGSGKT +L R+ L+ + N S +L +T T Sbjct: 7 LDGLNDKQREAVVA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM HR+ +++ SH H L G+ Sbjct: 65 KAAAEMRHRIEHTLSSSSH---------------------------HRLF-------GMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEE 163 V T H+ +++ L+A++ F I D E Sbjct: 91 VGTFHSIANRLLRSHYLDADLPQDFQIMDSE 121 >gi|28572402|ref|NP_789182.1| ATP-dependent DNA helicase subunit [Tropheryma whipplei TW08/27] gi|28410533|emb|CAD66919.1| putative ATP-dependent DNA helicase subunit [Tropheryma whipplei TW08/27] Length = 973 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 ++L + T+ ++ + P +A V A AGSGKT LV R+L L+ + P +++ LT T+ Sbjct: 15 LNLHAPTEEQRAIIESPLENALVIAGAGSGKTETLVLRLLWLIASGKLKPESIMGLTFTR 74 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEI 101 AA E++ R+ + + + + ++LS EI Sbjct: 75 KAAGELASRLQKSLAILNSYTGDVLSPEI 103 >gi|293400338|ref|ZP_06644484.1| putative ATP-dependent nuclease subunit A [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306738|gb|EFE47981.1| putative ATP-dependent nuclease subunit A [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 1081 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 22/118 (18%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV-LEIITAW 89 ++ VSA+AGSGKT +L+ R++ L++ + P +L +T T+AAA+EM R+ + A+ Sbjct: 17 KNIMVSASAGSGKTTVLIARLMDLVVKDRVPIDAILAMTFTEAAASEMKKRLAASLQKAY 76 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 D A IT+ +T ++T + TIH+FC +I+Q++ Sbjct: 77 EETKDPEERAYITR-----------------QLTSIQTA---HISTIHSFCLSILQEY 114 >gi|238897902|ref|YP_002923581.1| DNA-dependent ATPase I and helicase II [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465659|gb|ACQ67433.1| DNA-dependent ATPase I and helicase II [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 731 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 39/141 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ LL + + P ++L +T T AAAEM HRV Sbjct: 27 VLAGAGSGKTRVLVHRIAWLLSVEHVSPYSILSVTFTNKAAAEMRHRV------------ 74 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 SA + +Q G+ T H +++ LEAN+ Sbjct: 75 ---SALMGSMQ-----------------------DGMWTGTFHGLAHRLLRMHYLEANLP 108 Query: 155 SHFAIADEEQSKKLIEEAKKS 175 F I D + +L+++ KS Sbjct: 109 KDFQIIDNDDQLRLLKKIIKS 129 >gi|238060999|ref|ZP_04605708.1| ATP-dependent DNA helicase pcrA [Micromonospora sp. ATCC 39149] gi|237882810|gb|EEP71638.1| ATP-dependent DNA helicase pcrA [Micromonospora sp. ATCC 39149] Length = 799 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL A + HP ++ +T T AA EM RV +++ + L Sbjct: 56 IVAGAGSGKTRVLTHRIAYLLAARDVHPGEIIAITFTNKAAGEMKERVTQLVGPRARL-- 113 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + V T H+ C I++ A + Sbjct: 114 ------------------------------------MWVSTFHSACVRILRAEHEHAGLK 137 Query: 155 SHFAIADEEQSKKLIE 170 S F+I D + S++L++ Sbjct: 138 SSFSIYDADDSRRLMQ 153 >gi|307250580|ref|ZP_07532522.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857396|gb|EFM89510.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 699 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 37/151 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E ++A P + V A AGSGKT +L R+ L+ + N S +L +T T Sbjct: 7 LDGLNDKQREAVVA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM HR+ +++ SH H L G+ Sbjct: 65 KAAAEMRHRIEHTLSSSSH---------------------------HRLF-------GMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEE 163 V T H+ +++ L+A++ F I D E Sbjct: 91 VGTFHSIANRLLRSHYLDADLPQDFQIMDSE 121 >gi|28493486|ref|NP_787647.1| DNA helicase II [Tropheryma whipplei str. Twist] gi|28476528|gb|AAO44616.1| putative DNA helicase II [Tropheryma whipplei str. Twist] Length = 973 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 ++L + T+ ++ + P +A V A AGSGKT LV R+L L+ + P +++ LT T+ Sbjct: 15 LNLHAPTEEQRAIIESPLENALVIAGAGSGKTETLVLRLLWLIASGKLKPESIMGLTFTR 74 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEI 101 AA E++ R+ + + + + ++LS EI Sbjct: 75 KAAGELASRLQKSLAILNSYTGDVLSPEI 103 >gi|93005845|ref|YP_580282.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5] gi|92393523|gb|ABE74798.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5] Length = 733 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 82/203 (40%), Gaps = 21/203 (10%) Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D S+ + QLLA+ V A AGSGKT L R L+ P +L LT T+ Sbjct: 58 VDYASELNANQLLAATTIEGKVLVIAGAGSGKTKTLTYRTSYLIENGVSPKEILLLTFTR 117 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA E+ R ++ + + L+ ++ ++ K P ++ T G Sbjct: 118 KAANEIKGRARALLASTPSFAQR-LNEDL--VEDKLPKNKALNDI---------TSG--- 162 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKA 191 T H+FC +++Q+ I F I D S+ I+ K + N KK Sbjct: 163 --TFHSFCNMLLRQYSGLLGINPRFTILDTGDSEDAIDLIHKEKKYPTKITNQAFPRKKT 220 Query: 192 FYEILEISNDEDIETLISDIISN 214 I S + I I D+I N Sbjct: 221 LQNIFSTSRNRRIH--IRDLIEN 241 >gi|71279005|ref|YP_266848.1| DNA-dependent helicase II [Colwellia psychrerythraea 34H] gi|71144745|gb|AAZ25218.1| DNA helicase II [Colwellia psychrerythraea 34H] Length = 724 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 45/195 (23%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69 SE +D ++ + + + A P ++ + A AGSGKT +LVQR+ L+ S ++L +T Sbjct: 4 SELLDSLNDKQRDVVAA--PKQNMLILAGAGSGKTRVLVQRIAWLMQVEGISSHSILAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM RV ++ +H Sbjct: 62 FTNKAAAEMRARVEQVTNGNTH-------------------------------------- 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ + T H +++ EAN+ F + D + +LI K + S+ LD + Sbjct: 84 GMWIGTFHGLAHRLLRMHFQEANLPQSFQVLDSDDQLRLI----KRIVRSLELDEKKWPP 139 Query: 190 KAFYEILEISNDEDI 204 K F + DE + Sbjct: 140 KQFVWYINGKKDEGL 154 >gi|260887200|ref|ZP_05898463.1| ATP-dependent nuclease subunit A [Selenomonas sputigena ATCC 35185] gi|330839034|ref|YP_004413614.1| recombination helicase AddA [Selenomonas sputigena ATCC 35185] gi|260863262|gb|EEX77762.1| ATP-dependent nuclease subunit A [Selenomonas sputigena ATCC 35185] gi|329746798|gb|AEC00155.1| recombination helicase AddA [Selenomonas sputigena ATCC 35185] Length = 1251 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 23/138 (16%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R++ R+L LL +T T AAAAEM R+ + Sbjct: 24 VAAAAGSGKTSVLVERIIRRILQGETDVDRLLVVTFTNAAAAEMRERI-----------E 72 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 L+ EI K A L L + T+HAFC+ ++++ ++ Sbjct: 73 AALAQEIAK-----------GTASPKLERQLALLSNASISTLHAFCQNVIRRNFSVIDLD 121 Query: 155 SHFAIADEEQSKKLIEEA 172 F +A+E++ + L + A Sbjct: 122 PKFRLANEQERRLLQQNA 139 >gi|261418926|ref|YP_003252608.1| recombination helicase AddA [Geobacillus sp. Y412MC61] gi|319765743|ref|YP_004131244.1| recombination helicase AddA [Geobacillus sp. Y412MC52] gi|261375383|gb|ACX78126.1| recombination helicase AddA [Geobacillus sp. Y412MC61] gi|317110609|gb|ADU93101.1| recombination helicase AddA [Geobacillus sp. Y412MC52] Length = 1242 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 25/136 (18%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ + A LL +T T AAAAEM R+ Sbjct: 27 RDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDRLLVVTFTNAAAAEMKARI------ 80 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 E L E+ K+P+ + + LL P + T+H+FC +++++ Sbjct: 81 -----GEALEREL----AKRPHSLHLRRQLSLL------PRA-AISTLHSFCLDVIRKYY 124 Query: 149 LEANITSHFAIADEEQ 164 ++ F IADE + Sbjct: 125 YLLDLDPSFRIADETE 140 >gi|13476580|ref|NP_108150.1| ATP-dependent DNA helicase [Mesorhizobium loti MAFF303099] gi|14027342|dbj|BAB53611.1| ATP-dependent DNA helicase [Mesorhizobium loti MAFF303099] Length = 697 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 29/138 (21%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT+ L RV L++ A P +L +T ++ AA+EM+ RV I + E Sbjct: 44 VIAGAGSGKTNTLAHRVAHLIVKGADPRRILLMTFSRRAASEMAKRVERI-------AGE 96 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +L + +IT T G T H +++ + LE + Sbjct: 97 VLGRDAA------------------VITDALTWAG----TFHGIGARLLRDYALEIGLDP 134 Query: 156 HFAIADEEQSKKLIEEAK 173 F I D E S L+ A+ Sbjct: 135 AFTIHDREDSADLMNLAR 152 >gi|159039658|ref|YP_001538911.1| UvrD/REP helicase [Salinispora arenicola CNS-205] gi|157918493|gb|ABV99920.1| UvrD/REP helicase [Salinispora arenicola CNS-205] Length = 1162 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLL 66 E ++ + L + T+ + + + P V A AGSGKT + RV+ L+AN+ HP +L Sbjct: 27 ELAKLLRLPAPTREQAAVIAAPVEPLLVVAGAGSGKTETMAARVV-WLVANSYVHPEQVL 85 Query: 67 CLTHTKAAAAEMSHRV 82 LT T+ AA E++HRV Sbjct: 86 GLTFTRKAAGELAHRV 101 >gi|296121114|ref|YP_003628892.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776] gi|296013454|gb|ADG66693.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776] Length = 845 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 40/139 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A GSGKT ++ +R+ RL+ HP+ +L +T T AA EM+ RV HL Sbjct: 25 VLAGPGSGKTRVVTRRIARLIERRVHPAEILAITFTNKAAREMAERV-------EHL--- 74 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 I G++ + V T H FC I++Q+ + Sbjct: 75 --------IPGRR----------------------VAVSTFHKFCARILRQYGGVVGLKP 104 Query: 156 HFAIADEEQSKKLIEEAKK 174 +F+I D + ++EA K Sbjct: 105 NFSILDVKDQDAALKEAVK 123 >gi|223039071|ref|ZP_03609362.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter rectus RM3267] gi|222879710|gb|EEF14800.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter rectus RM3267] Length = 931 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 20/174 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + +LL+ A + LT TK AA EM R+++ E Sbjct: 7 LEASAGSGKTFALSVRFIAILLSGADAREITALTFTKKAANEMKERIVQTFLRLEEKGAE 66 Query: 96 ILSAEITKIQGKKPNK---SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + AE+ +I G ++ ++A H L LK+ T +F I++ F L Sbjct: 67 L--AELEQILGAGRDEILAMRDARATHFL------ESDLKIGTFDSFFVGILRSFCLNLG 118 Query: 153 ITSHFAIAD---EEQSKKLIEEAKK-----STLASIMLDNNEELKKAFYEILEI 198 +++ F +++ E Q + + K LA+ ++ E + +F+E LE+ Sbjct: 119 LSADFEVSENLNELQRGEFVASVSKDMRLLKALAN-LIATAERSQSSFFESLEM 171 >gi|167771642|ref|ZP_02443695.1| hypothetical protein ANACOL_03014 [Anaerotruncus colihominis DSM 17241] gi|167666282|gb|EDS10412.1| hypothetical protein ANACOL_03014 [Anaerotruncus colihominis DSM 17241] Length = 1174 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 25/170 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 VSA AGSGKT +LV+RV+ +L +P LL +T + AAA EM R++ Sbjct: 23 VSAAAGSGKTAVLVERVVGRILDEKNPVDADRLLIVTFSNAAALEMKQRIM--------- 73 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 A ++++ P + + + G ++ TIH+FC +++ Sbjct: 74 ------ARMSELIAAHPEDRRLRRQQ-------LLLGRAQISTIHSFCLELIRSNFQALG 120 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 I S+ ADE + + + + ++ + + D+ + E+L D+ Sbjct: 121 IASNTRAADERELEIMRRDCARACIEQFLSDDADGGFSQLVELLSAGRDD 170 >gi|167462209|ref|ZP_02327298.1| ATP-dependent deoxyribonuclease (subunit A) [Paenibacillus larvae subsp. larvae BRL-230010] Length = 1391 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 25/138 (18%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 ++ ++A AGSGKT +LV+R++R + P LL T TKAAA+EM R+ E Sbjct: 40 KNMLIAAAAGSGKTAVLVERIIRRISDEREPVDVDRLLVATFTKAAASEMKERIREA--- 96 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 L E+L K+P + + L+ G + T+H+FC ++++ Sbjct: 97 ---LEKELL---------KRPQSPHLRRQLALM-------GRANITTLHSFCLDVIRRHF 137 Query: 149 LEANITSHFAIADEEQSK 166 ++ F I+ E +++ Sbjct: 138 ASIHLDPVFRISGETETE 155 >gi|294054220|ref|YP_003547878.1| UvrD/REP helicase [Coraliomargarita akajimensis DSM 45221] gi|293613553|gb|ADE53708.1| UvrD/REP helicase [Coraliomargarita akajimensis DSM 45221] Length = 665 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 88/233 (37%), Gaps = 57/233 (24%) Query: 6 SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63 SF ID ++ EQ A +DP A V A AGSGKT L RV LL A Sbjct: 7 SFSSAFAPIDFRAELNDEQYAAVTADPG-PALVLAGAGSGKTRTLTYRVAYLLHAGVQAH 65 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L LT T AA EM RV E +TA S R L Sbjct: 66 EILLLTFTNKAAREMLERV-EDLTAVSR--------------------------RQLW-- 96 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 GG T H+ + I++Q + H+ I DE +++ L++ A + + Sbjct: 97 -----GG----TFHSIAQRILRQHGEHIGLKRHYTILDESEAESLLKNAINAVDPKFIKG 147 Query: 184 NNEELKKAFYEILEISND----------------EDIETLISDIISNRTALKL 220 N K ++ + + +D+ I+DI + A+KL Sbjct: 148 KNNPKPKVVANMISYARNTCRSVYEEADDHFPFLDDMAQKIADIYTKYQAMKL 200 >gi|319947691|ref|ZP_08021905.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4] gi|319438641|gb|EFV93547.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4] Length = 824 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 83/208 (39%), Gaps = 62/208 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ LL AHP +L +T T AAAEM RV ++ Sbjct: 39 IVAGAGSGKTSVLTRRIAYLLAEGGAHPGQILAITFTNKAAAEMRERVAALV-------- 90 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 P+ M V T H+ C I++ Q L Sbjct: 91 -------------GPHAERMW-----------------VATFHSICVRILRAQSALLGTR 120 Query: 154 TSHFAIADEEQSKKLIE--------EAKKST---LASIMLDNNEELKKAFYEILEISNDE 202 S+F I D + S++L+ E KK T LAS + ++ EL+ E Sbjct: 121 NSNFTIYDSDDSRRLLGMIAKEQQLEVKKFTPRMLASAISNHKNELRDP---------AE 171 Query: 203 DIETLISDIISNRTALKLIFFFFSYLWR 230 ++ + D S+RTA + F Y R Sbjct: 172 AMDRALED--SDRTAQTVAAVFTEYQAR 197 >gi|251796231|ref|YP_003010962.1| recombination helicase AddA [Paenibacillus sp. JDR-2] gi|247543857|gb|ACT00876.1| recombination helicase AddA [Paenibacillus sp. JDR-2] Length = 1277 Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 22/131 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V+A AGSGKT +LV+R++R + + + LL T TKAAAAEM R+ Sbjct: 32 VAAAAGSGKTAVLVERIIRKISSFSDVDRLLVATFTKAAAAEMKDRI------------- 78 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + K ++P + + L+ + T+H+FC +++++ + Sbjct: 79 --RIALEKELERQPESEHLRRQLALM-------NRASITTLHSFCLDVIRRYYPLIGLDP 129 Query: 156 HFAIADEEQSK 166 F IA+E +S+ Sbjct: 130 GFRIANETESE 140 >gi|258620540|ref|ZP_05715577.1| DNA helicase II [Vibrio mimicus VM573] gi|258587055|gb|EEW11767.1| DNA helicase II [Vibrio mimicus VM573] Length = 534 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 41/163 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ T G+ Sbjct: 66 KAAAEMRGRIEELMHG--------------------------------------TASGMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H C I++ L+A + F I D + ++L++ K+ Sbjct: 88 CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIKA 130 >gi|115378130|ref|ZP_01465306.1| ATP-dependent DNA helicase [Stigmatella aurantiaca DW4/3-1] gi|310821254|ref|YP_003953612.1| ATP-dependent DNA helicase, uvrd/rep family [Stigmatella aurantiaca DW4/3-1] gi|115364872|gb|EAU63931.1| ATP-dependent DNA helicase [Stigmatella aurantiaca DW4/3-1] gi|309394326|gb|ADO71785.1| ATP-dependent DNA helicase, UvrD/REP family [Stigmatella aurantiaca DW4/3-1] Length = 692 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 61/157 (38%), Gaps = 37/157 (23%) Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID + EQL A + A V A AG+GKT L RV RLL P +L LT T Sbjct: 19 IDYAALLNEEQLRAVEAGEGPALVIAGAGTGKTRTLTFRVARLLERGIPPEGVLLLTFTN 78 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM+ RV E+ + ++ +I G Sbjct: 79 KAAREMTRRVEELAGGF---------VDVRRILGG------------------------- 104 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T H A+++QF + F + D E ++ L+ Sbjct: 105 --TFHHAAHALLRQFAPTLGFATSFTVLDREDARDLM 139 >gi|89891075|ref|ZP_01202583.1| putative ATP-dependent DNA helicase [Flavobacteria bacterium BBFL7] gi|89516719|gb|EAS19378.1| putative ATP-dependent DNA helicase [Flavobacteria bacterium BBFL7] Length = 1605 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78 T Q++ + + V A GSGKT +LV ++ LLL + P L LT +KAAA E Sbjct: 1037 TDQTQVINDNKSDKILVYAGPGSGKTKVLVHKIASLLLIEDIKPEQFLMLTFSKAAALEF 1096 Query: 79 SHRVLEIITAWSHL 92 RV ++I +S L Sbjct: 1097 KQRVRKLIPEYSGL 1110 >gi|326798725|ref|YP_004316544.1| UvrD/REP helicase [Sphingobacterium sp. 21] gi|326549489|gb|ADZ77874.1| UvrD/REP helicase [Sphingobacterium sp. 21] Length = 1114 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 3/127 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AGSGKT L + LL + H S +L +T T A AEM HR+L +I + S+ Sbjct: 10 LKASAGSGKTFSLAAHYISLLFTSKVHFSEILAVTFTNKATAEMKHRILTVIEGLALGSE 69 Query: 95 EILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + S I + + + KA + IL + TI F + I++ F E Sbjct: 70 AVESYRNIILEAHPQLSRQDIQQKAMEVYRQILHNYSRFAISTIDGFYQKIIRSFSFELG 129 Query: 153 ITSHFAI 159 + + + + Sbjct: 130 LNAAYRL 136 >gi|158321059|ref|YP_001513566.1| hypothetical protein Clos_2033 [Alkaliphilus oremlandii OhILAs] gi|158141258|gb|ABW19570.1| hypothetical protein Clos_2033 [Alkaliphilus oremlandii OhILAs] Length = 812 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAA 75 I + K E ++ +DPT V+A G+GKT+ L++R+ L L +P ++ L+ +KAA Sbjct: 202 ILEDKQEDVIVADPTTKILVNAGPGTGKTYTLIERIKYLTLEEGINPENMMILSFSKAAI 261 Query: 76 AEMSHRV 82 E+ R+ Sbjct: 262 GEIHKRL 268 >gi|88861280|ref|ZP_01135912.1| hypothetical protein PTD2_09564 [Pseudoalteromonas tunicata D2] gi|88816761|gb|EAR26584.1| hypothetical protein PTD2_09564 [Pseudoalteromonas tunicata D2] Length = 721 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 41/160 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + + + A P ++ V A AGSGKT +LV R+ L+ + NA P ++ +T Sbjct: 4 SELLDGLNDKQRDAVAA--PLQNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIFAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV E T+ + G Sbjct: 62 FTNKAAKEMRSRVEE--------------------------------------TLKTSAG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 G+ + T H I++ EA++ F I D + ++I Sbjct: 84 GMWIGTFHGLAHRILRAHHREAHLPEAFQILDSDDQIRMI 123 >gi|288802440|ref|ZP_06407879.1| ATP-dependent helicase PcrA [Prevotella melaninogenica D18] gi|288334968|gb|EFC73404.1| ATP-dependent helicase PcrA [Prevotella melaninogenica D18] Length = 851 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 72/178 (40%), Gaps = 51/178 (28%) Query: 16 LISQTKSEQLLAS--DPTRSA--------WVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 +I+Q K E +LA+ + R A V A AGSGKT +L ++ LL P + Sbjct: 1 MINQDKEEAILAALNESQREAVEYCTGPSLVIAGAGSGKTRVLTYKIAYLLNKGLAPWNI 60 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L LT T AA EM R+ +I TA A+HL + Sbjct: 61 LALTFTNKAAREMKERIAQITTA--------------------------KDAQHLYMG-- 92 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 T H+ I+++ S+F I DE S+ LI KS + ++ LD Sbjct: 93 ---------TFHSIFARILRREGEAIGFGSNFTIYDENDSRSLI----KSIVKALDLD 137 >gi|89889935|ref|ZP_01201446.1| putative ATP-dependent helicase, UvrD/REP helicase family [Flavobacteria bacterium BBFL7] gi|89518208|gb|EAS20864.1| putative ATP-dependent helicase, UvrD/REP helicase family [Flavobacteria bacterium BBFL7] Length = 1057 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 91/201 (45%), Gaps = 15/201 (7%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 + + SA+AGSGKT+ L + L LL N H +L +T T A AEM RVLE + + Sbjct: 6 TTFYSASAGSGKTYTLARDYLALLFQSQFNNHYRKILAVTFTNKAVAEMKERVLEHLYNF 65 Query: 90 SH--LSDEILS--AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + +E L I K+ G + +KA + +L + TI AF I++ Sbjct: 66 GKQPVPNESLGIFNHIKKLTGLSEQQLS-TKAIKIHQRLLHDYSAFDIVTIDAFNHRILR 124 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 F + ++ + F + E + LI +A ++ LA D K + + +I N++ + Sbjct: 125 TFAKDIDLPAGFEV--ELDTDSLINKAIQNLLARAGRDKELTKKLVSFSLSKIDNNKSWD 182 Query: 206 TL-----ISDIISNRTALKLI 221 IS +I N K + Sbjct: 183 VAYDLMQISALIKNENHFKYL 203 >gi|256544667|ref|ZP_05472039.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170] gi|256399556|gb|EEU13161.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170] Length = 1139 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 23/127 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA AGSGKT +LV R++ ++L P ++ +T T A+ EM R+ + + Sbjct: 31 VSAAAGSGKTRVLVDRLVSIMLEEKIPIKNMIIVTFTNKASVEMKDRIRQKLN------- 83 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQFPLEANI 153 E++ K SD ++ + +I + ++T+H+FC + + + F L N+ Sbjct: 84 ELM----------KEGNSDKIFIKNQIKSINDAF----IKTLHSFCADMLRENFYLSDNL 129 Query: 154 TSHFAIA 160 + F IA Sbjct: 130 SPSFKIA 136 >gi|253698974|ref|YP_003020163.1| exodeoxyribonuclease V subunit beta [Geobacter sp. M21] gi|251773824|gb|ACT16405.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. M21] Length = 1129 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 15/145 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + LRL+L S +L +T T+AA E+ R+ + + Sbjct: 17 IEASAGTGKTFTIAGVYLRLVLEEKFDVSRILVVTFTEAATKELKERIRNKL---KEAEN 73 Query: 95 EILS--AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 L+ AE I G + D S+AR LL + + + + TIH FC+ ++Q P E+ Sbjct: 74 GFLTGAAEDFLIDGLLKSTPDHSEARRLLGSAVRSFDEAAIFTIHGFCQRMLQDNPFESG 133 Query: 153 ITSHFAIADEE----QSKKLIEEAK 173 ++ D E Q K L+E A+ Sbjct: 134 -----SLCDTELVTDQGKILMEIAQ 153 >gi|300856842|ref|YP_003781826.1| ATP-dependent DNA helicase [Clostridium ljungdahlii DSM 13528] gi|300436957|gb|ADK16724.1| ATP-dependent DNA helicase [Clostridium ljungdahlii DSM 13528] Length = 746 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 39/138 (28%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT +L R+ ++ N +PS +L +T T AA EM R+ E++ DE+ Sbjct: 26 AGAGSGKTRVLTYRIAHMIKDMNIYPSKILAITFTNKAAGEMKDRIKELV------GDEV 79 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 G+ V T H+ C I+++ + + Sbjct: 80 --------------------------------DGMWVSTFHSSCVRILRREIDKLGYNKN 107 Query: 157 FAIADEEQSKKLIEEAKK 174 FAI D K LI++ K Sbjct: 108 FAIYDSYDQKVLIKQCMK 125 >gi|220907711|ref|YP_002483022.1| UvrD/REP helicase [Cyanothece sp. PCC 7425] gi|219864322|gb|ACL44661.1| UvrD/REP helicase [Cyanothece sp. PCC 7425] Length = 829 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 38/141 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A GSGKT +L +RVLR + + P +LCLT T AA EMS R Sbjct: 22 VLAPVGSGKTWVLSERVLRAVNSGIPPQQILCLTFTNRAAQEMSDR-------------- 67 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 L + E L ++T H C +++ +A + + Sbjct: 68 ------------------------LRAYLPEQANQLTIKTFHGLCAWMLRLEGQQAGLAA 103 Query: 156 HFAIADEEQSKKLIEEAKKST 176 F+I DE K+L++E T Sbjct: 104 DFSIYDENDCKELLKEISGRT 124 >gi|104784398|ref|YP_610896.1| DNA-dependent helicase II [Pseudomonas entomophila L48] gi|95113385|emb|CAK18113.1| DNA-dependent ATPase I and helicase II [Pseudomonas entomophila L48] Length = 727 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM HR+ +++ Sbjct: 30 VLAGAGSGKTRVLVHRIAWLIQVVQASPHSILSVTFTNKAAAEMRHRIEQLLGI------ 83 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P G+ V T H +++ EA + Sbjct: 84 --------------------------------NPAGMWVGTFHGLAHRLLRAHWQEAGLA 111 Query: 155 SHFAIADEEQSKKLIE 170 +F I D + ++LI+ Sbjct: 112 QNFQILDSDDQQRLIK 127 >gi|298207221|ref|YP_003715400.1| putative helicase [Croceibacter atlanticus HTCC2559] gi|83849857|gb|EAP87725.1| putative helicase [Croceibacter atlanticus HTCC2559] Length = 1054 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 8/130 (6%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWS--H 91 +A+AGSGKT LV+ L LL + ++L +T T A AEM R++E + A+S + Sbjct: 10 NASAGSGKTFSLVRDYLSLLFSAKKTDAFRSILAITFTNKAVAEMKSRIVENLIAFSKDN 69 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARH--LLITILETPGGLKVQTIHAFCEAIMQQFPL 149 D+ L A + + D+ K R LL ++ ++ TI F +++ F Sbjct: 70 TQDDYL-AMLNAVANSTNISQDLIKTRSVILLKKLIHNYAAFEISTIDGFTHRVLRTFAK 128 Query: 150 EANITSHFAI 159 + + S+F + Sbjct: 129 DLGLPSNFEV 138 >gi|152985841|ref|YP_001351544.1| DNA-dependent helicase II [Pseudomonas aeruginosa PA7] gi|150960999|gb|ABR83024.1| DNA helicase II [Pseudomonas aeruginosa PA7] Length = 728 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 39/142 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P V A AGSGKT +LV R+ L+ + +A P ++L +T T AAAEM HR+ +++ Sbjct: 23 PLGRQLVLAGAGSGKTRVLVHRIAWLIQVEHASPYSILSVTFTNKAAAEMRHRIEQLLGI 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 P G+ V T H +++ Sbjct: 83 --------------------------------------NPAGMWVGTFHGLAHRLLRAHW 104 Query: 149 LEANITSHFAIADEEQSKKLIE 170 EA ++ +F I D + ++L++ Sbjct: 105 REAGLSENFQILDSDDQQRLVK 126 >gi|320334525|ref|YP_004171236.1| UvrD/REP helicase [Deinococcus maricopensis DSM 21211] gi|319755814|gb|ADV67571.1| UvrD/REP helicase [Deinococcus maricopensis DSM 21211] Length = 768 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL++Q Q A+D T A V A AGSGKT LV R+ L+ + HP +L +T T Sbjct: 31 DLLAQLNPNQAQAADHHTGPALVIAGAGSGKTRTLVYRIAHLIQHYDVHPGEILAVTFTN 90 Query: 73 AAAAEMSHRVLEIITAWSHL 92 AAAEM R ++ + L Sbjct: 91 KAAAEMRERASHLVQGANQL 110 >gi|171912577|ref|ZP_02928047.1| probable helicase [Verrucomicrobium spinosum DSM 4136] Length = 1067 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 23/165 (13%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 ++ + A+AG+GKTH LVQR L LL A P + +T T+ AA E R+L+ + S Sbjct: 5 KNELIRASAGTGKTHSLVQRYLWLLEHGAEPERIAAMTFTRKAAGEFFERILQELATRS- 63 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 K G P LL ++ L++ TI +F + Q P E Sbjct: 64 ----------MKAGGGLP--------LTLLRKVVRRMDQLRLGTIDSFFATMTQCLPFEL 105 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN----EELKKAF 192 +T A+ E ++ + EE S L +I N+ +EL++A+ Sbjct: 106 GLTGKAALMSEAEATRAEEEVMDSLLLAIGRMNDAAALDELREAW 150 >gi|322383647|ref|ZP_08057398.1| ATP-dependent deoxyribonuclease-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151859|gb|EFX44802.1| ATP-dependent deoxyribonuclease-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 1350 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 25/134 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 ++A AGSGKT +LV+R++R + P LL T TKAAA+EM R+ E L Sbjct: 3 IAAAAGSGKTAVLVERIIRRISDEREPVDVDRLLVATFTKAAASEMKERIREA------L 56 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 E+L K+P + + L+ G + T+H+FC ++++ + Sbjct: 57 EKELL---------KRPQSPHLRRQLALM-------GRANITTLHSFCLDVIRRHFASIH 100 Query: 153 ITSHFAIADEEQSK 166 + F I+ E +++ Sbjct: 101 LDPVFRISGETETE 114 >gi|257440573|ref|ZP_05616328.1| ATP-dependent exoDNAse beta subunit [Faecalibacterium prausnitzii A2-165] gi|257196896|gb|EEU95180.1| ATP-dependent exoDNAse beta subunit [Faecalibacterium prausnitzii A2-165] Length = 1233 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 72/167 (43%), Gaps = 25/167 (14%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 T +++ D + VSA AGSGKT +L +R +RL+ HP LL +T T AAAA Sbjct: 7 TPAQRAAIEDRGGALLVSAAAGSGKTAVLTERAVRLITDPEHPVDADRLLIVTFTNAAAA 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R+ + + S +P + + R LL P + TI Sbjct: 67 ELRARIGQALLKRSQ---------------AEPGNGALRRQRMLL---QRAP----ICTI 104 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 AFC ++++ +I F+ AD + L A TL + D Sbjct: 105 DAFCLDLLRKHFQALDIPPDFSPADPGSVELLRASALSETLENAYRD 151 >gi|15600636|ref|NP_254130.1| DNA-dependent helicase II [Pseudomonas aeruginosa PAO1] gi|107104547|ref|ZP_01368465.1| hypothetical protein PaerPA_01005625 [Pseudomonas aeruginosa PACS2] gi|218894546|ref|YP_002443416.1| DNA-dependent helicase II [Pseudomonas aeruginosa LESB58] gi|313111618|ref|ZP_07797417.1| DNA helicase II [Pseudomonas aeruginosa 39016] gi|9951773|gb|AAG08828.1|AE004957_3 DNA helicase II [Pseudomonas aeruginosa PAO1] gi|7229494|gb|AAF42852.1| mismatch repair protein MutU [Pseudomonas aeruginosa PAO1] gi|218774775|emb|CAW30592.1| DNA helicase II [Pseudomonas aeruginosa LESB58] gi|310883919|gb|EFQ42513.1| DNA helicase II [Pseudomonas aeruginosa 39016] Length = 728 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 39/142 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P V A AGSGKT +LV R+ L+ + +A P ++L +T T AAAEM HR+ +++ Sbjct: 23 PLGRQLVLAGAGSGKTRVLVHRIAWLIQVEHASPYSILSVTFTNKAAAEMRHRIEQLLGI 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 P G+ V T H +++ Sbjct: 83 --------------------------------------NPAGMWVGTFHGLAHRLLRAHW 104 Query: 149 LEANITSHFAIADEEQSKKLIE 170 EA ++ +F I D + ++L++ Sbjct: 105 REAGLSENFQILDSDDQQRLVK 126 >gi|254237872|ref|ZP_04931195.1| DNA helicase II [Pseudomonas aeruginosa C3719] gi|254242995|ref|ZP_04936317.1| DNA helicase II [Pseudomonas aeruginosa 2192] gi|126169803|gb|EAZ55314.1| DNA helicase II [Pseudomonas aeruginosa C3719] gi|126196373|gb|EAZ60436.1| DNA helicase II [Pseudomonas aeruginosa 2192] Length = 728 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 39/142 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P V A AGSGKT +LV R+ L+ + +A P ++L +T T AAAEM HR+ +++ Sbjct: 23 PLGRQLVLAGAGSGKTRVLVHRIAWLIQVEHASPYSILSVTFTNKAAAEMRHRIEQLLGI 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 P G+ V T H +++ Sbjct: 83 --------------------------------------NPAGMWVGTFHGLAHRLLRAHW 104 Query: 149 LEANITSHFAIADEEQSKKLIE 170 EA ++ +F I D + ++L++ Sbjct: 105 REAGLSENFQILDSDDQQRLVK 126 >gi|296392306|ref|ZP_06881781.1| DNA-dependent helicase II [Pseudomonas aeruginosa PAb1] Length = 728 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 39/142 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P V A AGSGKT +LV R+ L+ + +A P ++L +T T AAAEM HR+ +++ Sbjct: 23 PLGRQLVLAGAGSGKTRVLVHRIAWLIQVEHASPYSILSVTFTNKAAAEMRHRIEQLLGI 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 P G+ V T H +++ Sbjct: 83 --------------------------------------NPAGMWVGTFHGLAHRLLRAHW 104 Query: 149 LEANITSHFAIADEEQSKKLIE 170 EA ++ +F I D + ++L++ Sbjct: 105 REAGLSENFQILDSDDQQRLVK 126 >gi|116053593|ref|YP_793920.1| DNA-dependent helicase II [Pseudomonas aeruginosa UCBPP-PA14] gi|115588814|gb|ABJ14829.1| DNA helicase II [Pseudomonas aeruginosa UCBPP-PA14] Length = 728 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 39/142 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P V A AGSGKT +LV R+ L+ + +A P ++L +T T AAAEM HR+ +++ Sbjct: 23 PLGRQLVLAGAGSGKTRVLVHRIAWLIQVEHASPYSILSVTFTNKAAAEMRHRIEQLLGI 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 P G+ V T H +++ Sbjct: 83 --------------------------------------NPAGMWVGTFHGLAHRLLRAHW 104 Query: 149 LEANITSHFAIADEEQSKKLIE 170 EA ++ +F I D + ++L++ Sbjct: 105 REAGLSENFQILDSDDQQRLVK 126 >gi|300245038|gb|ADJ94112.1| UvrD helicase [Hordeum vulgare subsp. vulgare] Length = 1185 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 71/179 (39%), Gaps = 44/179 (24%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 K + SD + A GSGKT +V RVL LL PS +L +T T AAA+EM Sbjct: 310 KQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEGISPSNILAMTFTTAAASEMRD 369 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ ++ GK + A+ ++I+ T H+FC Sbjct: 370 RIGAVV-------------------GK-------AVAKEIIIS-----------TFHSFC 392 Query: 141 EAIMQQFPLEANITSHFAIADEEQSK-------KLIEEAKKSTLASIMLDNNEELKKAF 192 + + + TS F I Q + +L+E K L + + ++K +F Sbjct: 393 LQLCRTHAEKLGRTSEFIIYGHGQQRRAIVEAERLLEHGKSDGLGDAVKQCDGDIKNSF 451 >gi|325830815|ref|ZP_08164199.1| UvrD/REP helicase [Eggerthella sp. HGA1] gi|325487222|gb|EGC89665.1| UvrD/REP helicase [Eggerthella sp. HGA1] Length = 1231 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 39/166 (23%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-----LLCLTHTKAAAAEMSHRVLEIITAWS 90 VSA AGSGKT L QR+ LL + P+ +L +T T+ AAAE+ RV + A Sbjct: 23 VSAGAGSGKTFTLTQRIAYALLPESGPAASGVDEVLAITFTEKAAAEIKARVKRTLRA-- 80 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 E L+ E ++ G + TIH C I++ L+ Sbjct: 81 ----EGLAEEALRVDGA------------------------WISTIHGMCARILRAHALD 112 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 + F I + + + + +A L D+N+ + + Y L Sbjct: 113 LGLDPAFGIMGDAERAEAVADAIDGALG----DDNDIIARGSYAAL 154 >gi|257790997|ref|YP_003181603.1| UvrD/REP helicase [Eggerthella lenta DSM 2243] gi|257474894|gb|ACV55214.1| UvrD/REP helicase [Eggerthella lenta DSM 2243] Length = 1165 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 39/166 (23%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-----LLCLTHTKAAAAEMSHRVLEIITAWS 90 VSA AGSGKT L QR+ LL + P+ +L +T T+ AAAE+ RV + A Sbjct: 23 VSAGAGSGKTFTLTQRIAYALLPESGPAASGVDEVLAITFTEKAAAEIKARVKRTLRA-- 80 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 E L+ E ++ G + TIH C I++ L+ Sbjct: 81 ----EGLAEEALRVDGA------------------------WISTIHGMCARILRAHALD 112 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 + F I + + + + +A L D+N+ + + Y L Sbjct: 113 LGLDPAFGIMGDAERAEAVADAIDGALG----DDNDIIARGSYAAL 154 >gi|298292379|ref|YP_003694318.1| UvrD/REP helicase [Starkeya novella DSM 506] gi|296928890|gb|ADH89699.1| UvrD/REP helicase [Starkeya novella DSM 506] Length = 690 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 31/135 (22%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT+ L RV L++ A P ++ LT ++ AAAEM+ RV E Sbjct: 35 VIAGAGSGKTNTLAHRVAHLIVNGADPRRIMLLTFSRRAAAEMTRRV------------E 82 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK-VQTIHAFCEAIMQQFPLEANIT 154 ++A + PN + +++ GL T H +++ + ++ + Sbjct: 83 RIAAHVL-----GPNAAVLTE-------------GLTFAGTFHGVGARLLRDYAVQIGLD 124 Query: 155 SHFAIADEEQSKKLI 169 +F I D E S LI Sbjct: 125 PNFTIHDREDSADLI 139 >gi|323526899|ref|YP_004229052.1| UvrD/REP helicase [Burkholderia sp. CCGE1001] gi|323383901|gb|ADX55992.1| UvrD/REP helicase [Burkholderia sp. CCGE1001] Length = 741 Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 35/59 (59%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT+ L RV L++ A P +L LT ++ AA EM+ RV I TA Sbjct: 68 PPGALLVIAGAGSGKTNTLAHRVANLMVKGADPRRILLLTFSRRAALEMTRRVTRIATA 126 >gi|312132140|ref|YP_003999480.1| uvrd/rep helicase [Leadbetterella byssophila DSM 17132] gi|311908686|gb|ADQ19127.1| UvrD/REP helicase [Leadbetterella byssophila DSM 17132] Length = 1028 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 75/143 (52%), Gaps = 12/143 (8%) Query: 37 SANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 S++AGSGKT L + + +LA + + +L +T T AA +M R II+ L+ Sbjct: 11 SSSAGSGKTFTLTREYISTVLAAQEDDYFKRILAMTFTNEAAEQMKER---IISTLKGLA 67 Query: 94 DEILSAEITKIQGKKP---NKSDMS-KARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 ++ +AE K Q + + D++ K+R +L IL+ ++TI +F ++Q F + Sbjct: 68 NQDGAAEAYKEQIQDATGLSDEDLARKSRKVLHEILQNYNDFAIKTIDSFVNQVIQSFAI 127 Query: 150 EANITSHFAIADEEQSKKLIEEA 172 + + ++ I + + LIEEA Sbjct: 128 DLKLPYNYEIVLDTNT--LIEEA 148 >gi|170696350|ref|ZP_02887480.1| UvrD/REP helicase [Burkholderia graminis C4D1M] gi|170138756|gb|EDT06954.1| UvrD/REP helicase [Burkholderia graminis C4D1M] Length = 738 Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 35/59 (59%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT+ L RV L++ A P +L LT ++ AA EM+ RV I TA Sbjct: 55 PPGALLVIAGAGSGKTNTLAHRVANLMVKGADPGRILLLTFSRRAALEMTRRVTRIATA 113 >gi|116621025|ref|YP_823181.1| DNA helicase/exodeoxyribonuclease V subunit A [Candidatus Solibacter usitatus Ellin6076] gi|116224187|gb|ABJ82896.1| DNA helicase/exodeoxyribonuclease V, subunit A [Candidatus Solibacter usitatus Ellin6076] Length = 1045 Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 77/170 (45%), Gaps = 35/170 (20%) Query: 23 EQLLASDPTR---SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 +QL A D + +A V A GSGKT +LV+ RL+ A+ P +L +T T+ AA M Sbjct: 9 DQLDAVDVEKRHLNACVVAGPGSGKTTVLVEYFRRLVEADVDPLRILAITFTEKAAGNMR 68 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 ++ + Q + ++ + +A V T+H F Sbjct: 69 KKLGQ------------------AFQDQPQIRARLERAW--------------VSTVHGF 96 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 C ++++ + A + F + D +S ++ +EA ++ + S+ D+ E ++ Sbjct: 97 CARLLRENAVFAGVDPEFRVLDATESWRMQQEAMRTAIDSLFADHLEGMR 146 >gi|158321312|ref|YP_001513819.1| recombination helicase AddA [Alkaliphilus oremlandii OhILAs] gi|251764496|sp|A8MJ41|ADDA_ALKOO RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|158141511|gb|ABW19823.1| Recombination helicase AddA [Alkaliphilus oremlandii OhILAs] Length = 1197 Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 54/227 (23%), Positives = 100/227 (44%), Gaps = 35/227 (15%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 TK +Q + V+A AGSGKT +LV+R+++++L + LL +T T AAA EM Sbjct: 5 TKEQQAAIDARGSNLLVAAAAGSGKTAVLVERIIQIILKDRIDIDRLLIVTFTNAAAGEM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R I A +T+++ K + + + LL + T+H+ Sbjct: 65 RER--------------IAGAIMTEMEKKTGGEEHLRRQLSLL-------NRASITTVHS 103 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC ++++ ++ F I D ++ + EA L + D E+ + F+ ++E Sbjct: 104 FCIDVVRRHFHMIDVDPGFRIGDVTETSIMKLEA----LEELFEDEYEKGNEEFFNLVEA 159 Query: 199 SNDEDIETLISDIISNRTALKLIFFF----FSYLWRRKIIEKSLWSI 241 + + D++ LK+ F + +W R+ +E SI Sbjct: 160 FGGTREDRPLQDLV-----LKIYGFIQSQPYPEIWLRERVEDFALSI 201 >gi|326517054|dbj|BAJ96519.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 774 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 71/179 (39%), Gaps = 44/179 (24%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 K + SD + A GSGKT +V RVL LL PS +L +T T AAA+EM Sbjct: 310 KQREASCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEGISPSNILAMTFTTAAASEMRD 369 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ ++ GK + A+ ++I+ T H+FC Sbjct: 370 RIGAVV-------------------GK-------AVAKEIIIS-----------TFHSFC 392 Query: 141 EAIMQQFPLEANITSHFAIADEEQSK-------KLIEEAKKSTLASIMLDNNEELKKAF 192 + + + TS F I Q + +L+E K L + + ++K +F Sbjct: 393 LQLCRTHAEKLGRTSEFIIYGHGQQRRAIVEAERLLEHGKSDGLGDAVKQCDGDIKNSF 451 >gi|254497559|ref|ZP_05110348.1| DNA-dependent helicase II [Legionella drancourtii LLAP12] gi|254353217|gb|EET11963.1| DNA-dependent helicase II [Legionella drancourtii LLAP12] Length = 725 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 70/178 (39%), Gaps = 47/178 (26%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEIIT 87 P + V A AGSGKT +LV R+ L+ H P +L +T T AA EM R Sbjct: 21 PLGNTLVLAGAGSGKTKVLVSRIA-WLIEEEHISPHGILAVTFTNKAAGEMRAR------ 73 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQ 146 L ++L TP GL V T H C ++++ Sbjct: 74 ---------------------------------LNSLLATPVLGLWVGTFHGLCHRLLRR 100 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204 EAN+ F I D E ++I K +A++ LD+ + K + DE + Sbjct: 101 HYKEANLPEQFHILDSEDQARVI----KRVIAALNLDSEQWPVKQAQSFINGRKDEGV 154 >gi|108763229|ref|YP_630836.1| ATP-dependent DNA helicase UvrD [Myxococcus xanthus DK 1622] gi|108467109|gb|ABF92294.1| ATP-dependent DNA helicase, UvrD/REP family [Myxococcus xanthus DK 1622] Length = 1220 Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 23/162 (14%) Query: 26 LASDPT-----RSAWVSANAGSGKTHILVQRVLRLLLAN------AHPSTLLCLTHTKAA 74 ++S+P+ R+ + A AG+GKT+ LV L LL PS L LT T A Sbjct: 1 MSSEPSLFALERNLALMAGAGAGKTYSLVTMTLHLLAGARVAGGAVRPSRLCMLTFTDKA 60 Query: 75 AAEMSHRVLEIITAWSH----LSDEI-LSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 AAEM RV + + + L E+ L + ++ P + R E G Sbjct: 61 AAEMRSRVRQRLDGLAQGDTRLDQEVDLRESLARLDKPFPLPDAWRQLR-------EELG 113 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 V T H+ C ++++ P I +F + D ++ L+++ Sbjct: 114 AATVGTFHSLCGQLLRRAPPAVGIDPNFEVLDSLEATGLVQD 155 >gi|282889815|ref|ZP_06298354.1| hypothetical protein pah_c004o216 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500389|gb|EFB42669.1| hypothetical protein pah_c004o216 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 677 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 47/157 (29%) Query: 23 EQLLASDPTRSAWVS---------ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 E+L A +P++ A V+ A AGSGKT +L R+ L+ + A P ++L LT T Sbjct: 7 EELDALNPSQRAAVTTTDGRVLILAGAGSGKTKVLTVRMAYLMSIKGASPKSILGLTFTN 66 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM HR+ A H++ +I Sbjct: 67 KAAAEMRHRIGAF--AAPHIAKQI-----------------------------------S 89 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + T H+FC I++ + T F++ DE+ ++LI Sbjct: 90 LCTFHSFCMQILRAEIHKLGYTPQFSLYDEKDVQRLI 126 >gi|123968742|ref|YP_001009600.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. AS9601] gi|123198852|gb|ABM70493.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str. AS9601] Length = 1208 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 22/172 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A+AG+GK+ L VLR +L P +L L+ TK +E+ ++L + + +L Sbjct: 15 VEASAGTGKSFTLAHIVLRNVLEKKVKPDEILLLSFTKNTCSELRDKIL---SRFLNLKL 71 Query: 95 EILSAEITKIQGKKP----NKSDMSKARHLLIT----ILETPGGLKVQTIHAFCEAIMQQ 146 + S + KI N D K++ +I+ + LKV T HAFC I+ + Sbjct: 72 YLQSYKECKIDNTLKDWYLNFKDKDKSKEKIISEIDNFINQFYKLKVTTFHAFCNNIIDE 131 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN----NEELKKAFYE 194 + +E +T I + I+ K + ++ +D+ N EL A Y+ Sbjct: 132 YSIEIGLTQDPYIENN------IDNLYKDVIDNLWIDDFLNLNHELISAVYK 177 >gi|222054488|ref|YP_002536850.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. FRC-32] gi|221563777|gb|ACM19749.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. FRC-32] Length = 1083 Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 14/123 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL-- 92 + A+AG+GKT + LRL+L P +L +T T+AA E+ R+ + +T + Sbjct: 17 IEASAGTGKTFAIAALYLRLVLEQHLPVEQILVVTFTEAATKELRERIRKRLTEAAEAFG 76 Query: 93 ----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +D L I +I +D S A L L + + TIH FC+ ++Q+ P Sbjct: 77 QGTSTDSFLMCLIGRI-------TDRSAAGQALTNALRSFDEAAIFTIHGFCQRMLQENP 129 Query: 149 LEA 151 E+ Sbjct: 130 FES 132 >gi|307721378|ref|YP_003892518.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294] gi|306979471|gb|ADN09506.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294] Length = 693 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 17 ISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S+ EQ A + P + A+AG+GKT +V R+ LL N P+ +L LT T AA Sbjct: 3 LSRLNEEQYAAATSPHSKNLIIASAGTGKTSTIVGRIGHLLNNNIEPNEILLLTFTNKAA 62 Query: 76 AEMSHRVLEIITA 88 AEM RV E A Sbjct: 63 AEMVARVAEYFGA 75 >gi|256384179|gb|ACU78749.1| UvrD/REP helicase domain protein [Mycoplasma mycoides subsp. capri str. GM12] gi|256385011|gb|ACU79580.1| UvrD/REP helicase domain protein [Mycoplasma mycoides subsp. capri str. GM12] gi|296456014|gb|ADH22249.1| UvrD/REP helicase domain protein [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 722 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 48/189 (25%) Query: 14 IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 +DL++ + ++ +D P R + A AGSGKT ++ ++ L+ + P+ +L +T T Sbjct: 7 LDLLNPQQLAAVINTDKPVR---IIAGAGSGKTRVITTKIAYLIEKKHIDPTRILAVTFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RVL+I TK Q K P Sbjct: 64 NKAAKEMKERVLQI----------------TKNQKKSP---------------------- 85 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL--- 188 + T HA+C +++ + F I D + K++I+ A K ++I L N++ Sbjct: 86 FISTFHAWCSKVLRIDGKHVGLKDKFLIIDSDDQKRIIKNALKE--SNIELSENDKKTFD 143 Query: 189 KKAFYEILE 197 KK Y+I E Sbjct: 144 KKILYKIKE 152 >gi|153006848|ref|YP_001381173.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5] gi|152030421|gb|ABS28189.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5] Length = 1083 Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 31/144 (21%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 +SA+AG+GKTH L + + LL +A P ++ +T+T AA E+ R+ E + Sbjct: 6 ISASAGTGKTHRLTGDLTKALLDGSARPEGVVAITYTVKAAGELESRIRESL-------- 57 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++ +P + + + + TIH+ C+ ++++F LEA ++ Sbjct: 58 ---------LKAGRPELAARIRDGY-------------IGTIHSVCQRLLREFALEAGLS 95 Query: 155 SHFAIADEEQSKKLIEEAKKSTLA 178 E + K+L + A S LA Sbjct: 96 PWLEPIPEPERKRLFDVALASVLA 119 >gi|261405600|ref|YP_003241841.1| recombination helicase AddA [Paenibacillus sp. Y412MC10] gi|261282063|gb|ACX64034.1| recombination helicase AddA [Paenibacillus sp. Y412MC10] Length = 1373 Score = 49.7 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 25/133 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++R +L +A LL T TKAAAAEM R+ Sbjct: 30 VAAAAGSGKTAVLVERIIRKILDDAAGFSVDRLLVATFTKAAAAEMRGRI---------- 79 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 E L E+ + P+ + + LL G + T+H+FC +++++ Sbjct: 80 -REALDRELD----RDPDNEHIRRQLALL-------GRASITTLHSFCMEVIRRYYQLIP 127 Query: 153 ITSHFAIADEEQS 165 + F I +E ++ Sbjct: 128 LDPGFRILNEHEA 140 >gi|329924069|ref|ZP_08279332.1| ATP-dependent nuclease subunit A [Paenibacillus sp. HGF5] gi|328940908|gb|EGG37216.1| ATP-dependent nuclease subunit A [Paenibacillus sp. HGF5] Length = 1376 Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 25/133 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++R +L +A LL T TKAAAAEM R+ Sbjct: 30 VAAAAGSGKTAVLVERIIRKILDDAAGFSVDRLLVATFTKAAAAEMRGRI---------- 79 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 E L E+ + P+ + + LL G + T+H+FC +++++ Sbjct: 80 -REALDRELD----RDPDNEHIRRQLALL-------GRASITTLHSFCMEVIRRYYQLIP 127 Query: 153 ITSHFAIADEEQS 165 + F I +E ++ Sbjct: 128 LDPGFRILNEHEA 140 >gi|260463377|ref|ZP_05811578.1| UvrD/REP helicase [Mesorhizobium opportunistum WSM2075] gi|259030967|gb|EEW32242.1| UvrD/REP helicase [Mesorhizobium opportunistum WSM2075] Length = 697 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 29/134 (21%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT+ L RV L++ A P +L +T ++ AA+EM+ RV I + E Sbjct: 44 VIAGAGSGKTNTLAHRVAHLIVKGADPRRILLMTFSRRAASEMARRVERI-------AGE 96 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +L + +IT T G T H +++ + LE + Sbjct: 97 VLGRDAA------------------VITDALTWAG----TFHGIGARLLRDYALEIGLDP 134 Query: 156 HFAIADEEQSKKLI 169 F I D E S L+ Sbjct: 135 AFTIHDREDSADLM 148 >gi|108762524|ref|YP_631669.1| ATP-dependent DNA helicase UvrD [Myxococcus xanthus DK 1622] gi|108466404|gb|ABF91589.1| ATP-dependent DNA helicase, UvrD/REP family [Myxococcus xanthus DK 1622] Length = 692 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 57/125 (45%), Gaps = 13/125 (10%) Query: 14 IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID + EQL A + V A AGSGKT L RV R+L P+ +L LT T Sbjct: 19 IDYAALLNEEQLRAVEAGEGPVLVIAGAGSGKTRTLTFRVARMLERGVPPAGILLLTFTN 78 Query: 73 AAAAEMSHRVLEIITAWS----------HLSDEILSAEITKIQGKKPNKS--DMSKARHL 120 AA EM+ RV E+ A+ H + +L + + G N + D AR L Sbjct: 79 KAAREMTRRVEELAGAFVDVRRILGGTFHHAAHVLLRQYAGVLGFSTNFTVLDREDARDL 138 Query: 121 LITIL 125 ++T + Sbjct: 139 MVTCI 143 >gi|319784375|ref|YP_004143851.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170263|gb|ADV13801.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 697 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 29/134 (21%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT+ L RV L++ A P +L +T ++ AA+EM+ RV I + E Sbjct: 44 VIAGAGSGKTNTLAHRVAHLIVKGADPRRILLMTFSRRAASEMARRVERI-------AGE 96 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +L + +IT T G T H +++ + LE + Sbjct: 97 VLGRDAA------------------VITDALTWAG----TFHGIGARLLRDYALEIGLDP 134 Query: 156 HFAIADEEQSKKLI 169 F I D E S L+ Sbjct: 135 AFTIHDREDSADLM 148 >gi|52629180|gb|AAU27921.1| DNA dependent ATPase I and helicase II [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 730 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 63/159 (39%), Gaps = 47/159 (29%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEI 85 + P + V A AGSGKT +LV R+ L+ H P +L +T T AA EM R Sbjct: 28 TSPLGNMLVLAGAGSGKTKVLVSRIA-WLIEEQHLSPHAILAVTFTNKAAGEMRSR---- 82 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIM 144 L ++L TP GL V T H C ++ Sbjct: 83 -----------------------------------LSSMLSTPTLGLWVGTFHGLCHRLL 107 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 ++ EAN+ F I D E ++I K + S+ LD Sbjct: 108 RRHYKEANLPEQFHILDSEDQARVI----KRVILSLNLD 142 >gi|307610545|emb|CBX00132.1| DNA helicase II [Legionella pneumophila 130b] Length = 721 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 63/159 (39%), Gaps = 47/159 (29%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEI 85 + P + V A AGSGKT +LV R+ L+ H P +L +T T AA EM R Sbjct: 19 TSPLGNMLVLAGAGSGKTKVLVSRIA-WLIEEQHLSPHAILAVTFTNKAAGEMRSR---- 73 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIM 144 L ++L TP GL V T H C ++ Sbjct: 74 -----------------------------------LSSMLSTPTLGLWVGTFHGLCHRLL 98 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 ++ EAN+ F I D E ++I K + S+ LD Sbjct: 99 RRHYKEANLPEQFHILDSEDQARVI----KRVILSLNLD 133 >gi|229814925|ref|ZP_04445263.1| hypothetical protein COLINT_01968 [Collinsella intestinalis DSM 13280] gi|229809412|gb|EEP45176.1| hypothetical protein COLINT_01968 [Collinsella intestinalis DSM 13280] Length = 1179 Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 35/170 (20%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCL 68 +DL + ++ + + R +VSA AGSGKT L +R+L L + P +L + Sbjct: 1 MDLSTLMPQQRDIVTTLDRPLFVSAGAGSGKTFTLTRRILWALSPESGPFIRNLDRVLAI 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T TK AAAE+ RV A I + G + D + Sbjct: 61 TFTKDAAAEIRERV--------------RGALIEEGMGDIALQVDDA------------- 93 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 + TIH C I++ LE + F++ DE S L++ A + +A Sbjct: 94 ---WISTIHGMCSRILRAHALELGLDPEFSVLDESVSGPLMDRAVDAVIA 140 >gi|54297755|ref|YP_124124.1| DNA-dependent helicase II [Legionella pneumophila str. Paris] gi|148359389|ref|YP_001250596.1| DNA dependent ATPase I and helicase II [Legionella pneumophila str. Corby] gi|296107435|ref|YP_003619135.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Legionella pneumophila 2300/99 Alcoy] gi|53751540|emb|CAH12958.1| DNA helicase II [Legionella pneumophila str. Paris] gi|148281162|gb|ABQ55250.1| DNA dependent ATPase I and helicase II [Legionella pneumophila str. Corby] gi|295649336|gb|ADG25183.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Legionella pneumophila 2300/99 Alcoy] Length = 721 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 63/159 (39%), Gaps = 47/159 (29%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEI 85 + P + V A AGSGKT +LV R+ L+ H P +L +T T AA EM R Sbjct: 19 TSPLGNMLVLAGAGSGKTKVLVSRIA-WLIEEQHLSPHAILAVTFTNKAAGEMRSR---- 73 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIM 144 L ++L TP GL V T H C ++ Sbjct: 74 -----------------------------------LSSMLSTPTLGLWVGTFHGLCHRLL 98 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 ++ EAN+ F I D E ++I K + S+ LD Sbjct: 99 RRHYKEANLPEQFHILDSEDQARVI----KRVILSLNLD 133 >gi|310657539|ref|YP_003935260.1| ATP-dependent nuclease subunit a [Clostridium sticklandii DSM 519] gi|308824317|emb|CBH20355.1| ATP-dependent nuclease, subunit A [Clostridium sticklandii] Length = 1184 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 22/127 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA AGSGKT +LVQR++ ++L LL +T T AAAAEM R+ +++ + D Sbjct: 20 VSAAAGSGKTAVLVQRIIDIVLNEKVDVQNLLIVTFTNAAAAEMKDRIQKML--MQRMLD 77 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P +S H L ++ + T+H+FC I+++ ++ Sbjct: 78 -------------NPQES------HYLTKQIQNLPRASISTMHSFCIDILRRNFHMLDLD 118 Query: 155 SHFAIAD 161 F IA+ Sbjct: 119 PSFKIAN 125 >gi|305432274|ref|ZP_07401437.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter coli JV20] gi|304444622|gb|EFM37272.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter coli JV20] Length = 920 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 11/132 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + L+L + +L LT TK A+ EM R++E S + Sbjct: 9 LEASAGSGKTFALSVRFVALILQGTKINEILALTFTKKASNEMKKRIIETFLNLEKESKK 68 Query: 96 ILSAEITKIQGKKPNK----SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 E+ ++ G + ++ D K L LK+ T +F I++ F L Sbjct: 69 SECKELCELLGCEEDELIFLRDKKKQEFL-------RQELKISTFDSFFSRILRAFALNL 121 Query: 152 NITSHFAIADEE 163 ++S F ++E+ Sbjct: 122 GLSSDFDTSEEK 133 >gi|182415966|ref|YP_001821032.1| UvrD/REP helicase [Opitutus terrae PB90-1] gi|177843180|gb|ACB77432.1| UvrD/REP helicase [Opitutus terrae PB90-1] Length = 668 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 39/79 (49%), Gaps = 3/79 (3%) Query: 9 EHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66 E ID +Q EQ A ++P V A AGSGKT L RV LL P +L Sbjct: 11 EQIPPIDFRAQLNDEQFAAVTAEPG-PLLVLAGAGSGKTRTLTYRVAYLLSRGVKPGEIL 69 Query: 67 CLTHTKAAAAEMSHRVLEI 85 LT T AA EM HRV ++ Sbjct: 70 LLTFTNKAAKEMLHRVQDL 88 >gi|54294730|ref|YP_127145.1| DNA-dependent helicase II [Legionella pneumophila str. Lens] gi|53754562|emb|CAH16046.1| DNA helicase II [Legionella pneumophila str. Lens] Length = 721 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 63/159 (39%), Gaps = 47/159 (29%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEI 85 + P + V A AGSGKT +LV R+ L+ H P +L +T T AA EM R Sbjct: 19 TSPLGNMLVLAGAGSGKTKVLVSRIA-WLIEEQHLSPHAILAVTFTNKAAGEMRSR---- 73 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIM 144 L ++L TP GL V T H C ++ Sbjct: 74 -----------------------------------LSSMLSTPTLGLWVGTFHGLCHRLL 98 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 ++ EAN+ F I D E ++I K + S+ LD Sbjct: 99 RRHYKEANLPEQFHILDSEDQARVI----KRVILSLNLD 133 >gi|161723247|ref|YP_095868.2| DNA-dependent helicase II [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 721 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 63/159 (39%), Gaps = 47/159 (29%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEI 85 + P + V A AGSGKT +LV R+ L+ H P +L +T T AA EM R Sbjct: 19 TSPLGNMLVLAGAGSGKTKVLVSRIA-WLIEEQHLSPHAILAVTFTNKAAGEMRSR---- 73 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIM 144 L ++L TP GL V T H C ++ Sbjct: 74 -----------------------------------LSSMLSTPTLGLWVGTFHGLCHRLL 98 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 ++ EAN+ F I D E ++I K + S+ LD Sbjct: 99 RRHYKEANLPEQFHILDSEDQARVI----KRVILSLNLD 133 >gi|212635558|ref|YP_002312083.1| exodeoxyribonuclease V subunit beta [Shewanella piezotolerans WP3] gi|212557042|gb|ACJ29496.1| Exodeoxyribonuclease V, beta subunit [Shewanella piezotolerans WP3] Length = 1232 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 18/144 (12%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87 S + A+AG+GKT+ + +RLLL + L C +T T AA E+ R+ + I Sbjct: 39 SRLIEASAGTGKTYTIAGLYVRLLLGHGTEQALSCEQILVVTFTNAATGELRDRIRKKIQ 98 Query: 88 -AWS-----HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 A+ + DE++S + + +SD + AR L L++ + TIH FC+ Sbjct: 99 LAYRCFIGLKVDDELISQLYNETR-----ESDKALARKRLDLALKSLDEAAIFTIHGFCQ 153 Query: 142 AIMQQFPLEANI--TSHFAIADEE 163 I+ E+++ S F + D E Sbjct: 154 RILADMAFESSLLFESEFTLDDSE 177 >gi|331703738|ref|YP_004400425.1| ATP dependent DNA helicase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802293|emb|CBW54447.1| ATP dependent DNA helicase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 722 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 48/189 (25%) Query: 14 IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 +DL++ + ++ +D P R + A AGSGKT ++ ++ L+ + P+ +L +T T Sbjct: 7 LDLLNPQQLAAVINTDKPVR---IIAGAGSGKTRVITTKIAYLIEKKHIDPTRILAVTFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RVL+I TK Q K P Sbjct: 64 NKAAKEMKERVLQI----------------TKNQKKSP---------------------- 85 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL--- 188 + T HA+C +++ + F I D + K++I+ A K ++I L N++ Sbjct: 86 FISTFHAWCSKVLRIDGKHVGLKDKFLIIDSDDQKRIIKNALKE--SNIELSENDKKTFD 143 Query: 189 KKAFYEILE 197 KK Y+I E Sbjct: 144 KKILYKIKE 152 >gi|300950421|ref|ZP_07164344.1| DNA helicase II [Escherichia coli MS 116-1] gi|300450267|gb|EFK13887.1| DNA helicase II [Escherichia coli MS 116-1] Length = 689 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 39/131 (29%) Query: 41 GSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSA 99 GSGKT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 1 GSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT----------- 49 Query: 100 EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAI 159 + GG+ V T H +++ ++AN+ F I Sbjct: 50 ---------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQI 82 Query: 160 ADEEQSKKLIE 170 D E +L++ Sbjct: 83 LDSEDQLRLLK 93 >gi|315125235|ref|YP_004067238.1| DNA-dependent helicase II [Pseudoalteromonas sp. SM9913] gi|315013748|gb|ADT67086.1| DNA-dependent helicase II [Pseudoalteromonas sp. SM9913] Length = 721 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 45/193 (23%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + + + A P ++ V A AGSGKT +LV R+ L+ + A ++ +T Sbjct: 4 SELLDGLNDKQRDAVAA--PLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASAYSIFAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV +E L A + G Sbjct: 62 FTNKAAKEMRSRV-----------EETLKAPV---------------------------G 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ + T H I++ EAN+ F I D + ++I K L S+ +D+ + Sbjct: 84 GMWIGTFHGLSHRILRAHHREANLPEAFQILDSDDQLRMI----KRLLKSMNIDDKKWPA 139 Query: 190 KAFYEILEISNDE 202 K F + DE Sbjct: 140 KQFGWYISAKKDE 152 >gi|313894811|ref|ZP_07828371.1| UvrD/REP helicase [Selenomonas sp. oral taxon 137 str. F0430] gi|312976492|gb|EFR41947.1| UvrD/REP helicase [Selenomonas sp. oral taxon 137 str. F0430] Length = 643 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 39/139 (28%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A AG+GKT +V R ++ P+ +L T T+ AA EM RV++ L DE Sbjct: 31 AGAGAGKTKTIVSRTAYMIEDGVSPANILLFTFTQKAADEMRTRVIQ------ALGDE-- 82 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE-ANITSH 156 AR G+ V T H+FC +++ F + T+ Sbjct: 83 -------------------AR-----------GIFVGTYHSFCAKLLRYFQNRFSGYTNQ 112 Query: 157 FAIADEEQSKKLIEEAKKS 175 F+I DE+ + L+++A +S Sbjct: 113 FSIYDEKDAMNLLKKAMRS 131 >gi|73539989|ref|YP_294509.1| UvrD/REP helicase [Ralstonia eutropha JMP134] gi|72117402|gb|AAZ59665.1| UvrD/REP helicase [Ralstonia eutropha JMP134] Length = 725 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 31/49 (63%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT+ L RV L+L A P +L LT ++ AAAEM RV I+ Sbjct: 72 AGAGSGKTNTLAHRVAHLVLNGADPRRILLLTFSRRAAAEMGRRVERIV 120 >gi|328944201|ref|ZP_08241665.1| hypothetical protein HMPREF0091_10890 [Atopobium vaginae DSM 15829] gi|327491120|gb|EGF22895.1| hypothetical protein HMPREF0091_10890 [Atopobium vaginae DSM 15829] Length = 1253 Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 39/153 (25%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHP---------STLLCLTHTKAAAAEMSHRVLEI 85 +V A AGSGKT L +RVL L + P S +L +T T AAA E+ R+ Sbjct: 37 FVEAGAGSGKTFTLTKRVLWALTKGSGPNGTAFLDDVSQVLIITFTHAAAHEIKERI--- 93 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 +S + +A H+ LE + TIH+ C I++ Sbjct: 94 -------------------------RSSLREA-HMPQQALEVDNAW-ISTIHSMCSRILK 126 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 + L+ I F+IA E + KL+ A + L+ Sbjct: 127 TYALDLGIDPQFSIASENDTVKLMRRAVQDVLS 159 >gi|153216919|ref|ZP_01950683.1| DNA helicase II [Vibrio cholerae 1587] gi|153830867|ref|ZP_01983534.1| DNA helicase II [Vibrio cholerae 623-39] gi|227080412|ref|YP_002808963.1| DNA helicase II [Vibrio cholerae M66-2] gi|229512494|ref|ZP_04401966.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TMA 21] gi|262191258|ref|ZP_06049454.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae CT 5369-93] gi|298500833|ref|ZP_07010635.1| DNA helicase II [Vibrio cholerae MAK 757] gi|124114039|gb|EAY32859.1| DNA helicase II [Vibrio cholerae 1587] gi|148873656|gb|EDL71791.1| DNA helicase II [Vibrio cholerae 623-39] gi|227008300|gb|ACP04512.1| DNA helicase II [Vibrio cholerae M66-2] gi|229350493|gb|EEO15441.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TMA 21] gi|262032863|gb|EEY51405.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae CT 5369-93] gi|297540337|gb|EFH76396.1| DNA helicase II [Vibrio cholerae MAK 757] Length = 723 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ T G+ Sbjct: 66 KAAAEMRGRIEELMHG--------------------------------------TASGMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 88 CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125 >gi|262172714|ref|ZP_06040392.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus MB-451] gi|261893790|gb|EEY39776.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus MB-451] Length = 723 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ T G+ Sbjct: 66 KAAAEMRGRIEELMHG--------------------------------------TASGMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 88 CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125 >gi|254291625|ref|ZP_04962414.1| DNA helicase II [Vibrio cholerae AM-19226] gi|150422482|gb|EDN14440.1| DNA helicase II [Vibrio cholerae AM-19226] Length = 723 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ T G+ Sbjct: 66 KAAAEMRGRIEELMHG--------------------------------------TASGMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 88 CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125 >gi|308234385|ref|ZP_07665122.1| UvrD/REP helicase [Atopobium vaginae DSM 15829] Length = 1248 Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 39/153 (25%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHP---------STLLCLTHTKAAAAEMSHRVLEI 85 +V A AGSGKT L +RVL L + P S +L +T T AAA E+ R+ Sbjct: 32 FVEAGAGSGKTFTLTKRVLWALTKGSGPNGTAFLDDVSQVLIITFTHAAAHEIKERI--- 88 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 +S + +A H+ LE + TIH+ C I++ Sbjct: 89 -------------------------RSSLREA-HMPQQALEVDNAW-ISTIHSMCSRILK 121 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 + L+ I F+IA E + KL+ A + L+ Sbjct: 122 TYALDLGIDPQFSIASENDTVKLMRRAVQDVLS 154 >gi|262341237|ref|YP_003284092.1| ATP-dependent DNA helicase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272574|gb|ACY40482.1| ATP-dependent DNA helicase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 860 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 3/65 (4%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEII 86 P+ +A+AGSGKT LV+ L +LL + +P +L LT TK A+ EM R+L+ + Sbjct: 4 PSTLKIYNASAGSGKTFFLVRNYLYVLLNSPYPDEFKRVLALTFTKTASEEMKKRILQCL 63 Query: 87 TAWSH 91 +S+ Sbjct: 64 KEFSN 68 >gi|197334239|ref|YP_002154837.1| DNA helicase II [Vibrio fischeri MJ11] gi|197315729|gb|ACH65176.1| DNA helicase II [Vibrio fischeri MJ11] Length = 733 Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 41/163 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 7 LDGLNDKQREAVAA--PLENMLVLAGAGSGKTRVLVHRIAWLMQIEQASPFSIMSVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ + GG+ Sbjct: 65 KAAAEMRGRIEELMHG--------------------------------------SAGGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H C I++ L+A + F I D + ++L++ K+ Sbjct: 87 NGTFHGICHRILRAHYLDAKLPEGFQIIDSDDQQRLLKRLIKA 129 >gi|153825962|ref|ZP_01978629.1| DNA helicase II [Vibrio cholerae MZO-2] gi|149740370|gb|EDM54506.1| DNA helicase II [Vibrio cholerae MZO-2] Length = 723 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ T G+ Sbjct: 66 KAAAEMRGRIEELMHG--------------------------------------TASGMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 88 CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125 >gi|59710675|ref|YP_203451.1| DNA-dependent helicase II [Vibrio fischeri ES114] gi|59478776|gb|AAW84563.1| DNA-dependent ATPase I and helicase II [Vibrio fischeri ES114] Length = 733 Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 41/163 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 7 LDGLNDKQREAVAA--PLENMLVLAGAGSGKTRVLVHRIAWLMQIEQASPFSIMSVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ + GG+ Sbjct: 65 KAAAEMRGRIEELMHG--------------------------------------SAGGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H C I++ L+A + F I D + ++L++ K+ Sbjct: 87 NGTFHGICHRILRAHYLDAKLPEGFQIIDSDDQQRLLKRLIKA 129 >gi|262201311|ref|YP_003272519.1| ATP-dependent DNA helicase PcrA [Gordonia bronchialis DSM 43247] gi|262084658|gb|ACY20626.1| ATP-dependent DNA helicase PcrA [Gordonia bronchialis DSM 43247] Length = 828 Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 40/136 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ LL A + P +L +T T AAAEM RV++++ Sbjct: 46 IVAGAGSGKTAVLTRRIAYLLAARDVSPGQVLAITFTNKAAAEMRERVIDLV-------- 97 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 P + M V T H+ C I++ Q L A + Sbjct: 98 -------------GPRATYMW-----------------VSTFHSTCVRILRAQSGLLAGM 127 Query: 154 TSHFAIADEEQSKKLI 169 S+F+I D + SK+L+ Sbjct: 128 NSNFSIYDADDSKRLL 143 >gi|258625863|ref|ZP_05720738.1| DNA helicase II [Vibrio mimicus VM603] gi|262163724|ref|ZP_06031464.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus VM223] gi|258581827|gb|EEW06701.1| DNA helicase II [Vibrio mimicus VM603] gi|262027704|gb|EEY46369.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus VM223] Length = 723 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ T G+ Sbjct: 66 KAAAEMRGRIEELMHG--------------------------------------TASGMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 88 CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125 >gi|153004883|ref|YP_001379208.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5] gi|152028456|gb|ABS26224.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5] Length = 745 Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 27/50 (54%), Positives = 30/50 (60%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT L RV RLL A P ++L LT T AA EM RV E+ Sbjct: 53 VVAGAGSGKTRTLTWRVARLLAEGASPESILLLTFTNKAAQEMLRRVGEV 102 >gi|302544595|ref|ZP_07296937.1| ATP-dependent DNA helicase PcrA [Streptomyces hygroscopicus ATCC 53653] gi|302462213|gb|EFL25306.1| ATP-dependent DNA helicase PcrA [Streptomyces himastatinicus ATCC 53653] Length = 823 Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL + HP +L +T T AA EM RV E++ Sbjct: 91 IVAGAGSGKTRVLTHRIAYLLGTRHVHPGQILAITFTNKAAGEMKERVEELV-------- 142 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + N + V T H+ C I+++ + T Sbjct: 143 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKKLGFT 172 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 173 SSFSIYDAADSKRLM 187 >gi|239979932|ref|ZP_04702456.1| ATP-dependent DNA helicase II [Streptomyces albus J1074] gi|291451787|ref|ZP_06591177.1| ATP-dependent DNA helicase II [Streptomyces albus J1074] gi|291354736|gb|EFE81638.1| ATP-dependent DNA helicase II [Streptomyces albus J1074] Length = 840 Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL HP +L +T T AA EM RV E++ Sbjct: 92 IVAGAGSGKTRVLTHRIAHLLGERGVHPGQILAITFTNKAAGEMKERVEELV-------- 143 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + N + V T H+ C I+++ T Sbjct: 144 -----------GPRAN-------------------AMWVSTFHSACVRILRRESKHLGFT 173 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 174 SSFSIYDAADSKRLM 188 >gi|32034174|ref|ZP_00134396.1| COG0210: Superfamily I DNA and RNA helicases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208790|ref|YP_001054015.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae L20] gi|126097582|gb|ABN74410.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 732 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 37/151 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +L R+ L+ + N S +L +T T Sbjct: 7 LDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM HR+ +++ SH H L G+ Sbjct: 65 KAAAEMRHRIEHTLSSSSH---------------------------HRLF-------GMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEE 163 V T H+ +++ L+A++ F I D E Sbjct: 91 VGTFHSIANRLLRSHYLDADLPQDFQIMDSE 121 >gi|297744967|emb|CBI38559.3| unnamed protein product [Vitis vinifera] Length = 951 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 E+S+ + ++ T+ E SD + + A GSGKT +V R+L LL PS +L + Sbjct: 4 EYSKYLQSLNDTQREAA-CSDISIPLMIVAGPGSGKTSTMVGRILMLLNEGISPSNILAM 62 Query: 69 THTKAAAAEMSHRVLEI 85 T T AAA+EMS R+ + Sbjct: 63 TFTTAAASEMSGRIAAV 79 >gi|209693834|ref|YP_002261762.1| DNA-dependent helicase II [Aliivibrio salmonicida LFI1238] gi|208007785|emb|CAQ77907.1| DNA helicase II UvrD [Aliivibrio salmonicida LFI1238] Length = 734 Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 41/163 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 7 LDGLNDKQREAVAA--PLENMLVLAGAGSGKTRVLVHRIAWLMQIEQASPFSIMSVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ + GG+ Sbjct: 65 KAAAEMRGRIEELMHG--------------------------------------SAGGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H C I++ L+A + F I D + ++L++ K+ Sbjct: 87 NGTFHGICHRILRAHYLDAKLPEGFQIIDSDDQQRLLKRLIKA 129 >gi|153800815|ref|ZP_01955401.1| DNA helicase II [Vibrio cholerae MZO-3] gi|229521109|ref|ZP_04410530.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TM 11079-80] gi|124123646|gb|EAY42389.1| DNA helicase II [Vibrio cholerae MZO-3] gi|229341994|gb|EEO06995.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TM 11079-80] gi|327483072|gb|AEA77479.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae LMA3894-4] Length = 723 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ T G+ Sbjct: 66 KAAAEMRGRIEELMHG--------------------------------------TASGMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 88 CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125 >gi|58040813|ref|YP_192777.1| DNA helicase II [Gluconobacter oxydans 621H] gi|58003227|gb|AAW62121.1| DNA helicase II [Gluconobacter oxydans 621H] Length = 740 Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 40/163 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCL 68 S T + +S+ EQ A + T + A AG+GKT +L R +LL A+PS +L + Sbjct: 7 SPTPEYLSRLNPEQRRAIETTEGPLLILAGAGTGKTRVLTTRFAHILLTGRAYPSQILAV 66 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV I+ E Sbjct: 67 TFTNKAAREMRERVSAILG--------------------------------------EPA 88 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 GL + T HA C ++++ +TS F I D + +L+++ Sbjct: 89 EGLWLGTFHAICARMLRRHAEYVGLTSSFNILDTDDQIRLLKQ 131 >gi|229524854|ref|ZP_04414259.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae bv. albensis VL426] gi|229338435|gb|EEO03452.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae bv. albensis VL426] Length = 723 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ T G+ Sbjct: 66 KAAAEMRGRIEELMHG--------------------------------------TASGMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 88 CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125 >gi|217076812|ref|YP_002334528.1| ATP-dependent nuclease, subunit A, putative [Thermosipho africanus TCF52B] gi|217036665|gb|ACJ75187.1| ATP-dependent nuclease, subunit A, putative [Thermosipho africanus TCF52B] Length = 1041 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 28/162 (17%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQ---RVLRLLLANAHP---STLLCLTHTKAAAAEMS 79 + D ++ ++SA+AG+GKT + +L+ +P ++ +T T+ AAAEM Sbjct: 7 IRKDINKNYFISASAGTGKTFTITNYYVEILKKYEKENYPEIVDEIVVVTFTRKAAAEMK 66 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+++++ S NK SK ++ L + + TI +F Sbjct: 67 ERIVKLVNEEFSQS---------------KNKEYWSKVKNNLSRAI-------ISTIDSF 104 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 C+ I+++ + A I F+I + +K IE A TL + Sbjct: 105 CQRILREENINAKIDPSFSIISNAKMEKYIERAVFLTLRYVF 146 >gi|121587578|ref|ZP_01677344.1| DNA helicase II [Vibrio cholerae 2740-80] gi|229527306|ref|ZP_04416699.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae 12129(1)] gi|121548216|gb|EAX58286.1| DNA helicase II [Vibrio cholerae 2740-80] gi|229335314|gb|EEO00798.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae 12129(1)] Length = 723 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ T G+ Sbjct: 66 KAAAEMRGRIEELMHG--------------------------------------TASGMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 88 CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125 >gi|15640220|ref|NP_229847.1| DNA-dependent helicase II [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121728028|ref|ZP_01681067.1| DNA helicase II [Vibrio cholerae V52] gi|147675309|ref|YP_001218450.1| DNA-dependent helicase II [Vibrio cholerae O395] gi|153818562|ref|ZP_01971229.1| DNA helicase II [Vibrio cholerae NCTC 8457] gi|153821587|ref|ZP_01974254.1| DNA helicase II [Vibrio cholerae B33] gi|229507007|ref|ZP_04396515.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae BX 330286] gi|229509377|ref|ZP_04398860.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae B33] gi|229516324|ref|ZP_04405772.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC9] gi|229606515|ref|YP_002877163.1| DNA-dependent helicase II [Vibrio cholerae MJ-1236] gi|254226330|ref|ZP_04919920.1| DNA helicase II [Vibrio cholerae V51] gi|254851318|ref|ZP_05240668.1| DNA-dependent helicase II [Vibrio cholerae MO10] gi|255744002|ref|ZP_05417956.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholera CIRS 101] gi|262153639|ref|ZP_06028766.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae INDRE 91/1] gi|262167390|ref|ZP_06035098.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC27] gi|9654595|gb|AAF93366.1| DNA helicase II [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121629731|gb|EAX62150.1| DNA helicase II [Vibrio cholerae V52] gi|125621135|gb|EAZ49479.1| DNA helicase II [Vibrio cholerae V51] gi|126510901|gb|EAZ73495.1| DNA helicase II [Vibrio cholerae NCTC 8457] gi|126520874|gb|EAZ78097.1| DNA helicase II [Vibrio cholerae B33] gi|146317192|gb|ABQ21731.1| DNA helicase II [Vibrio cholerae O395] gi|227012037|gb|ACP08247.1| DNA helicase II [Vibrio cholerae O395] gi|229346750|gb|EEO11720.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC9] gi|229353692|gb|EEO18629.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae B33] gi|229356112|gb|EEO21031.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae BX 330286] gi|229369170|gb|ACQ59593.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae MJ-1236] gi|254847023|gb|EET25437.1| DNA-dependent helicase II [Vibrio cholerae MO10] gi|255738267|gb|EET93658.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholera CIRS 101] gi|262024192|gb|EEY42885.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC27] gi|262030580|gb|EEY49217.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae INDRE 91/1] Length = 723 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ T G+ Sbjct: 66 KAAAEMRGRIEELMHG--------------------------------------TASGMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 88 CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125 >gi|262404930|ref|ZP_06081482.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC586] gi|262348769|gb|EEY97910.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC586] Length = 723 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ T G+ Sbjct: 66 KAAAEMRGRIEELMHG--------------------------------------TASGMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 88 CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125 >gi|68536650|ref|YP_251355.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium K411] gi|68264249|emb|CAI37737.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium K411] Length = 830 Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A AGSGKT +L +R+ LL P +L +T T AAAEM RV++++ Sbjct: 34 IVAGAGSGKTSVLTRRIAYLLANGVAPWQILAITFTNKAAAEMRERVMDMV--------- 84 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANIT 154 P M V T H+FC +++ L + Sbjct: 85 ------------GPQAERMW-----------------VSTFHSFCVRVLRANAHLAPGLN 115 Query: 155 SHFAIADEEQSKKLI 169 ++F+I D + SK+L+ Sbjct: 116 TNFSIYDSDDSKRLM 130 >gi|297581630|ref|ZP_06943552.1| DNA helicase II [Vibrio cholerae RC385] gi|297534037|gb|EFH72876.1| DNA helicase II [Vibrio cholerae RC385] Length = 723 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ T G+ Sbjct: 66 KAAAEMRGRIEELMHG--------------------------------------TASGMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 88 CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125 >gi|284036711|ref|YP_003386641.1| exodeoxyribonuclease V [Spirosoma linguale DSM 74] gi|283816004|gb|ADB37842.1| Exodeoxyribonuclease V [Spirosoma linguale DSM 74] Length = 1120 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 15/165 (9%) Query: 37 SANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 S++AGSGKT+ L + L+L L + + +L +T T AAA EM +R+L+ ++ + Sbjct: 6 SSSAGSGKTYTLTKEYLKLALRPGEKDDYFRRILAVTFTNAAANEMKNRILKNLSEMAGK 65 Query: 93 SDEILSAEITKIQGKKPNKSDM---------SKARHLLITILETPGGLKVQTIHAFCEAI 143 + L E+ P SD+ S+A + TIL V TI +F + + Sbjct: 66 KESPLLNELVTELYDTPPGSDLFEDKKTELCSRASSVFRTILHRYADFSVTTIDSFTQRV 125 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + F E + F + E + +++E A + + D EE+ Sbjct: 126 VMAFTDELGLPYSFDV--EMDTDEVLELAIDNLIEKAGTDEMEEI 168 >gi|261213182|ref|ZP_05927465.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC341] gi|260837600|gb|EEX64294.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC341] Length = 723 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ T G+ Sbjct: 66 KAAAEMRGRIEELMHG--------------------------------------TASGMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 88 CGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLK 125 >gi|308270800|emb|CBX27410.1| hypothetical protein N47_H22320 [uncultured Desulfobacterium sp.] Length = 657 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 58/142 (40%), Gaps = 38/142 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT L RV RL+ P+++L LT T+ A+ EM Sbjct: 37 VIAGAGSGKTRTLTYRVARLVEEGTPPASILLLTFTRKASQEM----------------- 79 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +++A +LL E G+ T H+F I++++ S Sbjct: 80 ------------------LNRATNLLDKRCE---GVSGGTFHSFANYILRRYSRYIGFDS 118 Query: 156 HFAIADEEQSKKLIEEAKKSTL 177 F I D + S+ LI +K L Sbjct: 119 GFNILDRDDSEALIGIVRKEML 140 >gi|323357219|ref|YP_004223615.1| superfamily I DNA and RNA helicase [Microbacterium testaceum StLB037] gi|323273590|dbj|BAJ73735.1| superfamily I DNA and RNA helicase [Microbacterium testaceum StLB037] Length = 826 Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ LL A+PS +L +T T AA EM RV ++I Sbjct: 56 IVAGAGSGKTSVLTRRIASLLRTREAYPSQILAITFTNKAAGEMRERVHQLI-------- 107 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G+K + G+ + T H+ C I+++ + T Sbjct: 108 -----------GQKAD-------------------GMWISTFHSACVRILRREAEQFGFT 137 Query: 155 SHFAIADEEQSKKLIEEAKK 174 F I D S+ LI+ K Sbjct: 138 KAFTIYDSGDSRALIKRLVK 157 >gi|260770702|ref|ZP_05879632.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio furnissii CIP 102972] gi|260614283|gb|EEX39472.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio furnissii CIP 102972] gi|315178541|gb|ADT85455.1| DNA-dependent helicase II [Vibrio furnissii NCTC 11218] Length = 724 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E+ ++ + G+ Sbjct: 66 KAAAEMRGRIDEL--------------------------------------MMGSSSGMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 88 NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLLK 125 >gi|227431965|ref|ZP_03913985.1| DNA helicase/exodeoxyribonuclease V, subunit A [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352250|gb|EEJ42456.1| DNA helicase/exodeoxyribonuclease V, subunit A [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 1230 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 23/168 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK++Q + + V+A+AGSGKT +L++R+++ +L+ L +T T AAA EM Sbjct: 6 TKNQQRAIEEKGHNILVAASAGSGKTTVLIERLIQKILSGVSVEKFLIVTFTNAAAKEMR 65 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R LE+ K+ +D S+ R L +L P + TI A+ Sbjct: 66 ER-LEVAIE------------------KRLKVADESQKRFLQEQLLILPAA-NISTIDAY 105 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 I++ + + F + + +KL+++ LA ++ D +E Sbjct: 106 ALRIIEIYYHVIGLDPQFRLLSDTAERKLLQQ---DVLADVLADFYDE 150 >gi|302553643|ref|ZP_07305985.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM 40736] gi|302471261|gb|EFL34354.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM 40736] Length = 826 Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL + HP +L +T T AA EM RV +++ Sbjct: 90 IVAGAGSGKTRVLTHRIAHLLAERDVHPGQILAITFTNKAAGEMKERVEQLV-------- 141 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + N + V T H+ C I+++ + T Sbjct: 142 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKKLGFT 171 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 172 SSFSIYDAADSKRLM 186 >gi|217979456|ref|YP_002363603.1| UvrD/REP helicase [Methylocella silvestris BL2] gi|217504832|gb|ACK52241.1| UvrD/REP helicase [Methylocella silvestris BL2] Length = 694 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 23/45 (51%), Positives = 31/45 (68%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT+ L RV L++ AHP +L +T ++ AAAEM+ RV Sbjct: 41 AGAGSGKTNTLAHRVAHLIVNGAHPHRILLMTFSRRAAAEMTRRV 85 >gi|294637961|ref|ZP_06716228.1| DNA helicase II [Edwardsiella tarda ATCC 23685] gi|291088893|gb|EFE21454.1| DNA helicase II [Edwardsiella tarda ATCC 23685] Length = 720 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 39/142 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ LL + P +++ +T T AAAEM HR+ +I Sbjct: 21 PRSNLLVLAGAGSGKTRVLVHRIAWLLAVEQCSPFSIMAVTFTNKAAAEMRHRIEALIGT 80 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + GG+ + T H +++ Sbjct: 81 --------------------------------------SQGGMWIGTFHGLAHRLLRAHH 102 Query: 149 LEANITSHFAIADEEQSKKLIE 170 L+A + F I D E +L++ Sbjct: 103 LDAGLPQDFQILDSEDQLRLLK 124 >gi|210623665|ref|ZP_03293974.1| hypothetical protein CLOHIR_01924 [Clostridium hiranonis DSM 13275] gi|210153430|gb|EEA84436.1| hypothetical protein CLOHIR_01924 [Clostridium hiranonis DSM 13275] Length = 1256 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 34/188 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 VSA AGSGKT +LV+R++ ++L L +T T AAA+EM R+ + I+ Sbjct: 23 VSAAAGSGKTAVLVERIISMILDTEEKVDIDKFLVVTFTNAAASEMRERIGDAIS----- 77 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 T ++ K P+ + K L + TIH+FC +++ Sbjct: 78 ---------TALE-KDPSNEHLQKQILFL-------NKANITTIHSFCLDVIKNNIHLIT 120 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASI-----MLDNNEELKKAFYEIL----EISNDED 203 + +F I D + + + +EA + + D N E K F +++ E + D Sbjct: 121 LDPNFRIGDTTECQLIAQEAIDEVFEELYEQGYLGDENSEKGKRFLKLIDSFAERNGDNQ 180 Query: 204 IETLISDI 211 +++LI I Sbjct: 181 VQSLIMSI 188 >gi|325954156|ref|YP_004237816.1| UvrD/REP helicase [Weeksella virosa DSM 16922] gi|323436774|gb|ADX67238.1| UvrD/REP helicase [Weeksella virosa DSM 16922] Length = 1033 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 19/171 (11%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVL----EIITAW 89 +A+AG+GKT+ LV+ +L +LL N+ + +L +T T AA EM R+L E+ Sbjct: 11 NASAGAGKTYTLVRNLLIILLQNSRDNWFEYILAITFTNKAANEMKERILLNLKELADPT 70 Query: 90 SHLSDEILS-AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +D I A+ TK+ + + KA +L +IL + TI F +++ F Sbjct: 71 KKQNDYIQGIAKDTKLSIDEIQQ----KAHRILTSILHNYSKFSISTIDKFNLRLIKSFA 126 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 + ++ F + E K LIEEA + I D EEL ++ IL++S Sbjct: 127 QDLGLSMSFDV--EMDVKTLIEEAVNLVYSKIGKD--EELTES---ILDMS 170 >gi|291320248|ref|YP_003515509.1| ATP dependent helicase [Mycoplasma agalactiae] gi|290752580|emb|CBH40552.1| ATP dependent helicase [Mycoplasma agalactiae] Length = 734 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 41/160 (25%) Query: 17 ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 +++ ++E L D P R + A AGSGKT +L +++ L+ + P +L +T T A Sbjct: 18 LNEEQTEALYYFDGPLR---IIAGAGSGKTRVLTRKIAYLINVLGISPDHILAVTFTNKA 74 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EMS RV + K NK G ++ Sbjct: 75 ASEMSERVKQYTNT-------------------KFNK-----------------GTAEIS 98 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 T H+ C I+++ N+ + F I D+ KK++++ K Sbjct: 99 TFHSLCARILREEAFHINLKNDFQIIDDNDKKKILKDIYK 138 >gi|148377565|ref|YP_001256441.1| ATP-dependent helicase [Mycoplasma agalactiae PG2] gi|148291611|emb|CAL58997.1| ATP dependent helicase [Mycoplasma agalactiae PG2] Length = 734 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 41/160 (25%) Query: 17 ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 +++ ++E L D P R + A AGSGKT +L +++ L+ + P +L +T T A Sbjct: 18 LNEEETEALYYFDGPLR---IIAGAGSGKTRVLTRKIAYLINVLGISPDHILAVTFTNKA 74 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EMS RV + K NK G ++ Sbjct: 75 ASEMSERVKQYTNT-------------------KFNK-----------------GTAEIS 98 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 T H+ C I+++ N+ + F I D+ KK++++ K Sbjct: 99 TFHSLCARILREEAFHINLKNDFQIIDDNDKKKILKDIYK 138 >gi|118575660|ref|YP_875403.1| superfamily I helicase [Cenarchaeum symbiosum A] gi|118194181|gb|ABK77099.1| superfamily I helicase [Cenarchaeum symbiosum A] Length = 977 Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 24/51 (47%), Positives = 33/51 (64%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A GSGKT ++V+RVL ++ A P +LCLT ++ AA EM R+ E I Sbjct: 20 VRAGPGSGKTRVIVERVLHMVRNGADPGRILCLTFSEKAAGEMLGRLKESI 70 >gi|27380604|ref|NP_772133.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110] gi|27353769|dbj|BAC50758.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110] Length = 685 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 33/50 (66%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT+ L RV L++A A P +L +T ++ AAAEM+ RV I Sbjct: 32 VIAGAGSGKTNTLAHRVAHLIVAGADPRRILLMTFSRRAAAEMAGRVERI 81 >gi|222637066|gb|EEE67198.1| hypothetical protein OsJ_24304 [Oryza sativa Japonica Group] Length = 1186 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 44/179 (24%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 + + SD T + A GSGKT +V RVL LL PS +L +T T AAA+EM Sbjct: 290 RQREAACSDVTIPLMIVAGPGSGKTSTMVGRVLTLLKEEFPPSNILAMTFTTAAASEMRD 349 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ ++ GK + A+ ++I+ T H+FC Sbjct: 350 RIGTVV-------------------GK-------AVAKEIVIS-----------TFHSFC 372 Query: 141 EAIMQQFPLEANITSHFAIADEEQSK-------KLIEEAKKSTLASIMLDNNEELKKAF 192 + + + TS F I Q + +L+E K + L + + ++K +F Sbjct: 373 LQLCRTHAEKLGRTSEFIIYGNGQQRRAVIEAERLLESDKNNGLGDANKNCDGDIKNSF 431 >gi|148826204|ref|YP_001290957.1| DNA-dependent helicase II [Haemophilus influenzae PittEE] gi|229846218|ref|ZP_04466330.1| DNA-dependent helicase II [Haemophilus influenzae 7P49H1] gi|148716364|gb|ABQ98574.1| DNA helicase II [Haemophilus influenzae PittEE] gi|229811222|gb|EEP46939.1| DNA-dependent helicase II [Haemophilus influenzae 7P49H1] Length = 726 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 39/162 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ +T Sbjct: 4 SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK-ARHLLITILETP 128 T AAAEM HR+ +S ++K A+H L Sbjct: 62 FTNKAAAEMRHRI----------------------------QSTLAKHAQHQLF------ 87 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ + T H+ +++ L+ + F I D E ++LI+ Sbjct: 88 -GMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQRRLIK 128 >gi|254467915|ref|ZP_05081321.1| UvrD/REP helicase, putative [beta proteobacterium KB13] gi|207086725|gb|EDZ64008.1| UvrD/REP helicase, putative [beta proteobacterium KB13] Length = 1015 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 29/128 (22%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 +S V A AGSGKT +L QR ++LL P +L +T T AAAEM +R IT + Sbjct: 16 KSIIVQAPAGSGKTELLTQRFIKLLAHVNSPREILAVTFTNKAAAEMKNR----ITNY-- 69 Query: 92 LSDEILSAEITKIQGKKPNKSDMSK----------ARHLLITILETPGGLKVQTIHAFCE 141 +Q K K+D +K AR IT+ E + TI A + Sbjct: 70 ------------LQNKTTPKNDTTKKLIDLLNKEIARR-GITVDEIISEFNILTIDALNQ 116 Query: 142 AIMQQFPL 149 I+ PL Sbjct: 117 QIINSTPL 124 >gi|315126291|ref|YP_004068294.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Pseudoalteromonas sp. SM9913] gi|315014805|gb|ADT68143.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Pseudoalteromonas sp. SM9913] Length = 1188 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 12/128 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTL---------LCLTHTKAAAAEMSHRVL-EI 85 + A+AG+GKT+ + LR LL P L L +T T AA E+ RV I Sbjct: 17 IEASAGTGKTYTITGLYLRYLLGMQIPGELSTPLSVEQILVVTFTDAATQEIKDRVRSRI 76 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 I A L ++ + E+ I+G D +A LL ++ + TIH FC+ +++ Sbjct: 77 IAARDALLGQVPNDEL--IEGVIAGVDDKHRAFDLLDAAAKSMDEAAIFTIHGFCQRMLK 134 Query: 146 QFPLEANI 153 Q E+ + Sbjct: 135 QHAFESGV 142 >gi|302346510|ref|YP_003814808.1| putative ATP-dependent helicase PcrA [Prevotella melaninogenica ATCC 25845] gi|302150595|gb|ADK96856.1| putative ATP-dependent helicase PcrA [Prevotella melaninogenica ATCC 25845] Length = 851 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 72/178 (40%), Gaps = 51/178 (28%) Query: 16 LISQTKSEQLLAS--DPTRSA--------WVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 +I+Q K E +L++ + R A V A AGSGKT +L ++ LL P + Sbjct: 1 MINQDKEEAILSALNESQREAVEYCTGPSLVIAGAGSGKTRVLTYKIAYLLNKGLKPWNI 60 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L LT T AA EM R+ +I TA A+HL + Sbjct: 61 LALTFTNKAAREMKERIAQITTA--------------------------KDAQHLYMG-- 92 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 T H+ I+++ S+F I DE S+ LI KS + ++ LD Sbjct: 93 ---------TFHSIFARILRREGEAIGFGSNFTIYDENDSRSLI----KSIVKALDLD 137 >gi|254455522|ref|ZP_05068951.1| DNA helicase II [Candidatus Pelagibacter sp. HTCC7211] gi|207082524|gb|EDZ59950.1| DNA helicase II [Candidatus Pelagibacter sp. HTCC7211] Length = 678 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 42/168 (25%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68 +S+ +D ++ + E +L D + A AGSGKT +L R+ ++ A P+ +L + Sbjct: 3 NSDYLDNLNNAQKEAVLHVDG--PLLIVAGAGSGKTKVLTSRIAHIIKKKKAFPNQILSV 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV +I+ + T Sbjct: 61 TFTNKAAKEMQTRVSKILGS--------------------------------------TA 82 Query: 129 GGLK-VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 GL + T H+ C I+++ AN+ S+F I D + +LI+ KS Sbjct: 83 TGLSWLGTFHSICVKILRKHAKAANLNSNFTIIDTDDQIRLIKNICKS 130 >gi|323494180|ref|ZP_08099295.1| DNA-dependent helicase II [Vibrio brasiliensis LMG 20546] gi|323311574|gb|EGA64723.1| DNA-dependent helicase II [Vibrio brasiliensis LMG 20546] Length = 723 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 41/157 (26%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 7 LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E+ ++ + G+ Sbjct: 65 KAAAEMRGRIEEL--------------------------------------MMGSASGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T H C I++ L+A + F I D + ++L+ Sbjct: 87 NGTFHGICHRILRAHYLDAQLPEDFQIIDSDDQQRLL 123 >gi|225454963|ref|XP_002277737.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1151 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 E+S+ + ++ T+ E SD + + A GSGKT +V R+L LL PS +L + Sbjct: 244 EYSKYLQSLNDTQRE-AACSDISIPLMIVAGPGSGKTSTMVGRILMLLNEGISPSNILAM 302 Query: 69 THTKAAAAEMSHRVLEI 85 T T AAA+EMS R+ + Sbjct: 303 TFTTAAASEMSGRIAAV 319 >gi|313898067|ref|ZP_07831606.1| ATP-dependent DNA helicase PcrA [Clostridium sp. HGF2] gi|312957095|gb|EFR38724.1| ATP-dependent DNA helicase PcrA [Clostridium sp. HGF2] Length = 763 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 39/138 (28%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT ++ R+ L+ +P+ +L +T T AA EM RV ++ Sbjct: 26 AGAGSGKTRVVTTRIAYLINDCGVYPNKVLAITFTNKAAREMKERVENLL---------- 75 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 D++KA + + TIH+FC ++++ LE + Sbjct: 76 ---------------GDVAKA-------------VTISTIHSFCVRLLREDILELGYPRN 107 Query: 157 FAIADEEQSKKLIEEAKK 174 F I D + K ++ +A K Sbjct: 108 FTILDADDQKSILRDAYK 125 >gi|149371101|ref|ZP_01890696.1| ATP-dependent helicase [unidentified eubacterium SCB49] gi|149355887|gb|EDM44445.1| ATP-dependent helicase [unidentified eubacterium SCB49] Length = 1056 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 24/145 (16%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 P+ A AGSGKT+ LV+R L LL N++ LL LT T A AEM R++ + Sbjct: 4 PSPFFIYDAAAGSGKTYSLVKRYLSTLLQQPKNSYYRQLLALTFTNKAVAEMKERIVNSL 63 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMS------------KARHLLITILETPGGLKVQ 134 + A+ I+ P D++ +A +L +L V+ Sbjct: 64 ITF---------ADKQVIKDPPPMFLDIAETLELEPLVIQQRANDILTQLLHNYAAFSVE 114 Query: 135 TIHAFCEAIMQQFPLEANITSHFAI 159 TI +F +++ F + + S+F + Sbjct: 115 TIDSFNHRLIRTFSKDLKLPSNFEV 139 >gi|254478432|ref|ZP_05091809.1| recombination helicase AddA [Carboxydibrachium pacificum DSM 12653] gi|214035603|gb|EEB76300.1| recombination helicase AddA [Carboxydibrachium pacificum DSM 12653] Length = 1184 Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 93/208 (44%), Gaps = 38/208 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAW--S 90 ++A AGSGKT +LV+R++ ++ P LL +T T AAA+EM R+ E + + Sbjct: 1 MAAAAGSGKTAVLVERIINIVTDPEKPVDIDRLLVVTFTNAAASEMRERIAERLISLLDQ 60 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 H D+ L+ ++T + NK+ ++ TIH+FC ++++ Sbjct: 61 HPEDKRLADQLTLL-----NKATIT-------------------TIHSFCLDVVRKHFFL 96 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISD 210 ++ F + D+ ++ L EA + + N+E F ++E + + D Sbjct: 97 LDLDPSFRVGDDTETLLLKLEAMEELFEELYEKNDE----GFLLLVESYGGTKGDQYLQD 152 Query: 211 IISNRTALKLIFFFFSYLWRRKIIEKSL 238 ++ LKL F S W K + L Sbjct: 153 VL-----LKLYGFIRSLPWPEKWLNDVL 175 >gi|182436526|ref|YP_001824245.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777148|ref|ZP_08236413.1| ATP-dependent DNA helicase PcrA [Streptomyces cf. griseus XylebKG-1] gi|178465042|dbj|BAG19562.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657481|gb|EGE42327.1| ATP-dependent DNA helicase PcrA [Streptomyces cf. griseus XylebKG-1] Length = 813 Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL HP +L +T T AA EM RV +++ Sbjct: 87 IVAGAGSGKTRVLTHRIAHLLAERGTHPGQILAITFTNKAAGEMKERVEQLV-------- 138 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + N + V T H+ C I+++ + T Sbjct: 139 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKKLGFT 168 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 169 SSFSIYDAADSKRLM 183 >gi|320531567|ref|ZP_08032515.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337] gi|320136218|gb|EFW28218.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337] Length = 692 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 53/135 (39%), Gaps = 43/135 (31%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT +L R+ RL+ A P +L +T T AAAEM RV Sbjct: 8 AGAGSGKTRVLTHRIARLIATGRARPGEILAITFTNKAAAEMRERV-------------- 53 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIHAFCEAIMQQFPLEANIT 154 T L P G + V T H+ C I+++ A + Sbjct: 54 --------------------------TALVGPAGERMWVSTFHSACVRILRREHEAAGLR 87 Query: 155 SHFAIADEEQSKKLI 169 S F+I D S +LI Sbjct: 88 STFSIYDAADSTRLI 102 >gi|167623786|ref|YP_001674080.1| exodeoxyribonuclease V subunit beta [Shewanella halifaxensis HAW-EB4] gi|167353808|gb|ABZ76421.1| exodeoxyribonuclease V, beta subunit [Shewanella halifaxensis HAW-EB4] Length = 1240 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 8/139 (5%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87 S + A+AG+GKT + +RLLL + S L C +T T AA E+ R+ + I Sbjct: 36 SRLIEASAGTGKTFTIAGLYVRLLLGHGIESPLTCEQILVVTFTNAATGELRDRIRKKIQ 95 Query: 88 -AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 A+ + E+ ++S+++ AR L L++ + TIH FC+ I+ Sbjct: 96 LAYRRFIGLEVDDELINALYAATDESELAIARKRLDLALKSLDEAAIFTIHGFCQRILAD 155 Query: 147 FPLEANI--TSHFAIADEE 163 E+++ S F + D E Sbjct: 156 MAFESSLLFESEFTLDDSE 174 >gi|288927884|ref|ZP_06421731.1| putative UvrD/REP helicase domain protein [Prevotella sp. oral taxon 317 str. F0108] gi|288330718|gb|EFC69302.1| putative UvrD/REP helicase domain protein [Prevotella sp. oral taxon 317 str. F0108] Length = 1075 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 10/143 (6%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHL-SD 94 A+AGSGKT L +++LL N H +L +T T A EM R+L ++ W L S Sbjct: 11 ASAGSGKTFTLAVNYIKILLNNPHSYRNILAVTFTNKATEEMKLRILSQLYGIWKLLPSS 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + +IT G P + +A L +L +V+TI F +A+++ E ++T Sbjct: 71 KGYLDKITNELGISPEYAS-QQAGTALSNLLHNYNYFRVETIDTFFQAVLRNLARELDLT 129 Query: 155 S--HFAIAD---EEQS-KKLIEE 171 + H + D E+Q+ KLIE+ Sbjct: 130 ANLHVGLNDSQVEQQAVDKLIED 152 >gi|330470059|ref|YP_004407802.1| ATP-dependent DNA helicase PcrA [Verrucosispora maris AB-18-032] gi|328813030|gb|AEB47202.1| ATP-dependent DNA helicase PcrA [Verrucosispora maris AB-18-032] Length = 797 Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL A + HP ++ +T T AA EM RV +++ + L Sbjct: 53 IVAGAGSGKTRVLTHRIAYLLAARDVHPGEIIAITFTNKAAGEMKERVAKLVGPRARL-- 110 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + V T H+ C I++ A + Sbjct: 111 ------------------------------------MWVSTFHSACVRILRAEHEHAGLK 134 Query: 155 SHFAIADEEQSKKLIE 170 S F+I D + S++L++ Sbjct: 135 STFSIYDADDSRRLMQ 150 >gi|150020318|ref|YP_001305672.1| UvrD/REP helicase [Thermosipho melanesiensis BI429] gi|149792839|gb|ABR30287.1| UvrD/REP helicase [Thermosipho melanesiensis BI429] Length = 1003 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 35/151 (23%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHP---STLLCLTHTKAAAAEMSHRV 82 D ++ ++SA+AG+GKT+ + +++L +P ++ T TK AAAEM R+ Sbjct: 9 DINKNYFISASAGTGKTYTITHFYVKILSEYEKQNYPEIIDRIVVTTFTKKAAAEMKERI 68 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDM-SKARHLLITILETPGGLKVQTIHAFCE 141 +++ +P+ S K ++ L P + + TI +FC+ Sbjct: 69 FKLV---------------------EPHNSPYWHKVKNYL------PRAI-ISTIDSFCQ 100 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 ++++ + ANI +F I + + KLI+ A Sbjct: 101 RLLREENINANIDPNFTIISDLKMSKLIDRA 131 >gi|254230196|ref|ZP_04923589.1| DNA helicase II [Vibrio sp. Ex25] gi|262392860|ref|YP_003284714.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. Ex25] gi|151937281|gb|EDN56146.1| DNA helicase II [Vibrio sp. Ex25] gi|262336454|gb|ACY50249.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. Ex25] Length = 724 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E+ ++ + G+ Sbjct: 66 KAAAEMRGRIEEL--------------------------------------MMGSASGMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 88 NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLLK 125 >gi|239616541|ref|YP_002939863.1| UvrD/REP helicase [Kosmotoga olearia TBF 19.5.1] gi|239505372|gb|ACR78859.1| UvrD/REP helicase [Kosmotoga olearia TBF 19.5.1] Length = 652 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 38/138 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A GSGKT ++ ++ L+ + +P +L +T T+AA+ EM R Sbjct: 36 IVAGPGSGKTRVITFKIAYLVSSGVNPQNILLVTFTRAASREMIER-------------- 81 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 ++ + SD+ G+ T H C ++++ I+S Sbjct: 82 ----------ARRVSGSDLR--------------GMLAGTFHHVCNHFLRKYATHLGISS 117 Query: 156 HFAIADEEQSKKLIEEAK 173 F I D E SK LI+ K Sbjct: 118 DFTILDREDSKDLIKHCK 135 >gi|115472169|ref|NP_001059683.1| Os07g0492100 [Oryza sativa Japonica Group] gi|34393626|dbj|BAC83302.1| putative ATP-dependent DNA helicase [Oryza sativa Japonica Group] gi|50508450|dbj|BAD30552.1| putative ATP-dependent DNA helicase [Oryza sativa Japonica Group] gi|113611219|dbj|BAF21597.1| Os07g0492100 [Oryza sativa Japonica Group] gi|218199642|gb|EEC82069.1| hypothetical protein OsI_26061 [Oryza sativa Indica Group] Length = 1165 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 37/154 (24%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 + + SD T + A GSGKT +V RVL LL PS +L +T T AAA+EM Sbjct: 290 RQREAACSDVTIPLMIVAGPGSGKTSTMVGRVLTLLKEEFPPSNILAMTFTTAAASEMRD 349 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ ++ GK + A+ ++I+ T H+FC Sbjct: 350 RIGTVV-------------------GK-------AVAKEIVIS-----------TFHSFC 372 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + + + TS F I Q ++ + EA++ Sbjct: 373 LQLCRTHAEKLGRTSEFIIYGNGQQRRAVIEAER 406 >gi|332045229|gb|EGI81422.1| UvrD/REP helicase [Lacinutrix algicola 5H-3-7-4] Length = 1052 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 67/130 (51%), Gaps = 8/130 (6%) Query: 37 SANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS--H 91 +A+AGSGKT+ LV+ L++L +N +L +T T A EM R+LE++ +S H Sbjct: 11 NASAGSGKTYTLVKEYLKILFSTSSNYQFKNILAITFTNKAVGEMKARILEMLNVFSSTH 70 Query: 92 LSDE--ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 +E + +I + + + +K+ KA +L TI+ + TI F +++ F Sbjct: 71 NLNEPHAMFFDIAQ-ELEMEHKALQKKAEIILQTIMHNYAAFDISTIDGFNHRLIRTFAH 129 Query: 150 EANITSHFAI 159 + + +F + Sbjct: 130 DLKLPLNFEV 139 >gi|319937196|ref|ZP_08011603.1| ATP-dependent DNA helicase [Coprobacillus sp. 29_1] gi|319807562|gb|EFW04155.1| ATP-dependent DNA helicase [Coprobacillus sp. 29_1] Length = 715 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 39/135 (28%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT +L R+ L+ P +L +T T AA EM RV+ ++ ++ Sbjct: 26 AGAGSGKTRVLTYRIAYLIEEVGIEPRHILAITFTNKAANEMKERVIGLLGDYA------ 79 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 GG + TIH+ C I++Q N ++ Sbjct: 80 --------------------------------GGSLLCTIHSLCVRILRQNIRALNYPNN 107 Query: 157 FAIADEEQSKKLIEE 171 F I DEE K L+++ Sbjct: 108 FIIMDEEDQKSLLKK 122 >gi|226358112|ref|YP_002787851.1| ATP-dependent nuclease subunit A (AddA),; UvrD/REP helicase,; ATP-dependent exoDNAse (Exonuclease V) beta subunit (RecB) [Deinococcus deserti VCD115] gi|226319755|gb|ACO47749.1| putative ATP-dependent nuclease subunit A (AddA),; putative UvrD/REP helicase,; putative ATP-dependent exoDNAse (Exonuclease V) beta subunit (RecB) [Deinococcus deserti VCD115] Length = 114 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 35/56 (62%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 S +SA AGSGKT +L +R+L L+ P ++ +T T+AAAAE+ R+ + A Sbjct: 26 SVAISAGAGSGKTRVLAERILNLVQLGVDPGQIVAVTFTEAAAAELRERITRFVEA 81 >gi|320157772|ref|YP_004190151.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio vulnificus MO6-24/O] gi|319933084|gb|ADV87948.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio vulnificus MO6-24/O] Length = 724 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ S G+ Sbjct: 66 KAAAEMRGRIEELMMGSSS--------------------------------------GMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 88 NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLLK 125 >gi|27364389|ref|NP_759917.1| DNA-dependent helicase II [Vibrio vulnificus CMCP6] gi|37681375|ref|NP_935984.1| DNA-dependent helicase II [Vibrio vulnificus YJ016] gi|27360508|gb|AAO09444.1| DNA helicase II [Vibrio vulnificus CMCP6] gi|37200127|dbj|BAC95955.1| DNA helicase II [Vibrio vulnificus YJ016] Length = 724 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E+ ++ + G+ Sbjct: 66 KAAAEMRGRIEEL--------------------------------------MMGSASGMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 88 NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLLK 125 >gi|307730566|ref|YP_003907790.1| UvrD/REP helicase [Burkholderia sp. CCGE1003] gi|307585101|gb|ADN58499.1| UvrD/REP helicase [Burkholderia sp. CCGE1003] Length = 812 Score = 48.9 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 26/53 (49%), Positives = 33/53 (62%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT+ L RV L++ A P +L LT ++ AA EM+ RV I TA Sbjct: 75 VIAGAGSGKTNTLAHRVANLVVKGADPRRILLLTFSRRAAQEMTRRVTRIATA 127 >gi|307320004|ref|ZP_07599426.1| UvrD/REP helicase [Sinorhizobium meliloti AK83] gi|306894381|gb|EFN25145.1| UvrD/REP helicase [Sinorhizobium meliloti AK83] Length = 689 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 29/132 (21%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A AGSGKT+ L RV L++ A P +L +T ++ AAAEMS RV E + Sbjct: 37 AGAGSGKTNTLAHRVAHLIVNGADPRRILLMTFSRRAAAEMSRRV------------ERI 84 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157 A++ + ++ ++ L G T H +++ + + + + F Sbjct: 85 CAQV------------LGRSSGMMTDALSWAG-----TFHGIGARLLRIYAEQIGLNAEF 127 Query: 158 AIADEEQSKKLI 169 I D E S LI Sbjct: 128 TIHDREDSADLI 139 >gi|328471315|gb|EGF42214.1| DNA-dependent helicase II [Vibrio parahaemolyticus 10329] Length = 723 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 7 LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E+ ++ + G+ Sbjct: 65 KAAAEMRGRIEEL--------------------------------------MMGSASGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 87 NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLLK 124 >gi|145596329|ref|YP_001160626.1| ATP-dependent DNA helicase PcrA [Salinispora tropica CNB-440] gi|145305666|gb|ABP56248.1| ATP-dependent DNA helicase PcrA [Salinispora tropica CNB-440] Length = 795 Score = 48.9 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL A HP ++ +T T AA EM RV +++ + L Sbjct: 53 IVAGAGSGKTRVLTHRIAYLLAARQVHPGEIIAITFTNKAAGEMKERVAQLVGPRARL-- 110 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + V T H+ C I++ A + Sbjct: 111 ------------------------------------MWVSTFHSACVRILRAEHEHAGLK 134 Query: 155 SHFAIADEEQSKKLIE 170 S F+I D + S++L++ Sbjct: 135 STFSIYDADDSRRLMQ 150 >gi|309777085|ref|ZP_07672051.1| ATP-dependent DNA helicase PcrA [Erysipelotrichaceae bacterium 3_1_53] gi|308915155|gb|EFP60929.1| ATP-dependent DNA helicase PcrA [Erysipelotrichaceae bacterium 3_1_53] Length = 715 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 39/138 (28%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT ++ R+ L+ +P+ +L +T T AA EM RV ++ Sbjct: 26 AGAGSGKTRVVTTRIAYLINNCGVYPNKVLAITFTNKAAREMKERVEALL---------- 75 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 D++KA + + TIH+FC ++++ LE + Sbjct: 76 ---------------GDVAKA-------------VTISTIHSFCVRLLREDILELGYPRN 107 Query: 157 FAIADEEQSKKLIEEAKK 174 F I D + K ++ +A K Sbjct: 108 FTILDSDDQKSILRDAYK 125 >gi|227500430|ref|ZP_03930492.1| ATP-dependent exoDNAse beta subunit [Anaerococcus tetradius ATCC 35098] gi|227217493|gb|EEI82812.1| ATP-dependent exoDNAse beta subunit [Anaerococcus tetradius ATCC 35098] Length = 1121 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 77/155 (49%), Gaps = 23/155 (14%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78 TK ++L + ++ VSA AGSGKT +LV R+++L+ + + + +T T A+ EM Sbjct: 7 TKDQELAINARGKNIIVSAAAGSGKTSVLVTRIIKLITEDKEDIAKFIIVTFTNKASVEM 66 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + L D+ A+++ I K M +H +++T+H+ Sbjct: 67 KDRIRKALE--DKLRDK--DADLSFI------KEQMKNLKH-----------AQIKTLHS 105 Query: 139 FCEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEA 172 FC ++++ F +++ +F + + S L EA Sbjct: 106 FCSDMLRENFYYFDDLSPNFKVISDNTSTILKAEA 140 >gi|16263702|ref|NP_436495.1| UvrD2 DNA helicase [Sinorhizobium meliloti 1021] gi|14524418|gb|AAK65907.1| UvrD2 DNA helicase [Sinorhizobium meliloti 1021] Length = 689 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 29/132 (21%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A AGSGKT+ L RV L++ A P +L +T ++ AAAEMS RV E + Sbjct: 37 AGAGSGKTNTLAHRVAHLIVNGADPRRILLMTFSRRAAAEMSRRV------------ERI 84 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157 A++ + ++ ++ L G T H +++ + + + + F Sbjct: 85 CAQV------------LGRSSGMMTDALSWAG-----TFHGIGARLLRIYAEQIGLNAEF 127 Query: 158 AIADEEQSKKLI 169 I D E S LI Sbjct: 128 TIHDREDSADLI 139 >gi|159039726|ref|YP_001538979.1| ATP-dependent DNA helicase PcrA [Salinispora arenicola CNS-205] gi|157918561|gb|ABV99988.1| ATP-dependent DNA helicase PcrA [Salinispora arenicola CNS-205] Length = 794 Score = 48.9 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL A HP ++ +T T AA EM RV +++ + L Sbjct: 53 IVAGAGSGKTRVLTHRIAYLLAARQVHPGEIIAITFTNKAAGEMKDRVAQLVGPRARL-- 110 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + V T H+ C I++ A + Sbjct: 111 ------------------------------------MWVSTFHSACVRILRAEHEHAGVK 134 Query: 155 SHFAIADEEQSKKLIE 170 S F+I D + S++L++ Sbjct: 135 STFSIYDADDSRRLMQ 150 >gi|240142082|ref|YP_002966592.1| putative ATP-dependent DNA helicase [Methylobacterium extorquens AM1] gi|240012026|gb|ACS43251.1| putative ATP-dependent DNA helicase [Methylobacterium extorquens AM1] Length = 666 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 H+ + ++ + +LAS+P V A AGSGKT L +R+ RL+L P +L +T Sbjct: 15 HARILSGLNDQQQAVVLASEP--DVAVVAGAGSGKTETLTRRIARLVLDGVDPERILAIT 72 Query: 70 HTKAAAAEMSHR 81 TK AA M R Sbjct: 73 FTKQAAQNMRDR 84 >gi|311896487|dbj|BAJ28895.1| putative ATP-dependent DNA helicase PcrA [Kitasatospora setae KM-6054] Length = 885 Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 92/224 (41%), Gaps = 56/224 (25%) Query: 24 QLLA--SDPTRSA--------WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 QLL +DP R A + A AGSGKT +L R+ LL A P +L +T T Sbjct: 100 QLLEGMNDPQREAVLHAGSPLLIVAGAGSGKTRVLTHRIAHLLAARGVQPGEILAITFTN 159 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ +KA + Sbjct: 160 KAAGEMRERVEALV-------------------------GPRAKA-------------MW 181 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T H+ C I+++ + + S F+I D S++L+ + + LD + K+F Sbjct: 182 VSTFHSACVRILRREAKQLGMNSSFSIYDSADSQRLMALVCR----DLDLDPKQFPPKSF 237 Query: 193 Y-EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 +I + N+ E +D SN T KL +F L++R++ E Sbjct: 238 TSKISNLKNELIDEETYADQASNPTEKKLAEAYF--LYQRRLRE 279 >gi|330879358|gb|EGH13507.1| UvrD/REP helicase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 564 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 S+Q+ AS + A G+GKT LVQRV +L+L PS +L LT + AA+E+S R Sbjct: 203 SQQVAASHRDSPFQLQAGPGTGKTRTLVQRVEKLILDGEDPSAILVLTFSNKAASELSER 262 Query: 82 V 82 + Sbjct: 263 I 263 >gi|307300863|ref|ZP_07580638.1| UvrD/REP helicase [Sinorhizobium meliloti BL225C] gi|306904397|gb|EFN34982.1| UvrD/REP helicase [Sinorhizobium meliloti BL225C] Length = 689 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 29/132 (21%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A AGSGKT+ L RV L++ A P +L +T ++ AAAEMS RV E + Sbjct: 37 AGAGSGKTNTLAHRVAHLIVNGADPRRILLMTFSRRAAAEMSRRV------------ERI 84 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157 A++ + ++ ++ L G T H +++ + + + + F Sbjct: 85 CAQV------------LGRSSGMMTDALSWAG-----TFHGIGARLLRIYAEQIGLNAEF 127 Query: 158 AIADEEQSKKLI 169 I D E S LI Sbjct: 128 TIHDREDSADLI 139 >gi|239929399|ref|ZP_04686352.1| ATP-dependent DNA helicase II [Streptomyces ghanaensis ATCC 14672] gi|291437725|ref|ZP_06577115.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672] gi|291340620|gb|EFE67576.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672] Length = 835 Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL HP +L +T T AA EM RV +++ Sbjct: 90 IVAGAGSGKTRVLTHRIAYLLAERGVHPGQILAITFTNKAAGEMKERVEQLV-------- 141 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + N + V T H+ C I+++ + T Sbjct: 142 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKKLGFT 171 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 172 SSFSIYDAADSKRLM 186 >gi|296123691|ref|YP_003631469.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776] gi|296016031|gb|ADG69270.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776] Length = 700 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 28/136 (20%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A AG+GKT LV RV L+ P +L LT T+ AAAEM RV +++ + Sbjct: 45 AGAGTGKTTTLVHRVAHLIATGIDPGEILLLTFTRRAAAEMIRRVEQLLAVAAK------ 98 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157 S I +I G RH++ GG T HA +++F + + F Sbjct: 99 SPGIARIHG-----------RHVV-------GG----TFHAIATRHLREFGQYLGLDADF 136 Query: 158 AIADEEQSKKLIEEAK 173 I D ++ L+ + + Sbjct: 137 TILDRSDAEDLMNQLR 152 >gi|167855351|ref|ZP_02478118.1| DNA-dependent helicase II [Haemophilus parasuis 29755] gi|167853499|gb|EDS24746.1| DNA-dependent helicase II [Haemophilus parasuis 29755] Length = 727 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 37/158 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +L R+ L+ + N S +L +T T Sbjct: 7 LDGLNDKQREAVAA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGVENIAESNILAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM HR+ + S SD H L G+ Sbjct: 65 KAATEMRHRIEYTL---SQSSD------------------------HRLF-------GMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 V T H+ +++ L+AN+ F I D E ++LI+ Sbjct: 91 VGTFHSIANRLLRSHYLDANLPQDFQIMDTEDQQRLIK 128 >gi|153839103|ref|ZP_01991770.1| DNA helicase II [Vibrio parahaemolyticus AQ3810] gi|149747399|gb|EDM58363.1| DNA helicase II [Vibrio parahaemolyticus AQ3810] Length = 723 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 7 LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E+ ++ + G+ Sbjct: 65 KAAAEMRGRIEEL--------------------------------------MMGSASGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 87 NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLLK 124 >gi|119468303|ref|ZP_01611429.1| DNA-dependent ATPase I and helicase II [Alteromonadales bacterium TW-7] gi|119448296|gb|EAW29560.1| DNA-dependent ATPase I and helicase II [Alteromonadales bacterium TW-7] Length = 721 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 45/193 (23%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + + + A P ++ V A AGSGKT +LV R+ L+ + A ++ +T Sbjct: 4 SELLDGLNDKQRDAVAA--PLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASAYSIFAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV +E L A + G Sbjct: 62 FTNKAAKEMRTRV-----------EETLKAPV---------------------------G 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ + T H I++ EAN+ F I D + ++I K L S+ +D+ + Sbjct: 84 GMWIGTFHGLSHRILRAHHREANLPEAFQILDSDDQLRMI----KRLLKSMNIDDKKWPA 139 Query: 190 KAFYEILEISNDE 202 K F + DE Sbjct: 140 KQFGWYISAKKDE 152 >gi|254508570|ref|ZP_05120687.1| DNA helicase II [Vibrio parahaemolyticus 16] gi|219548512|gb|EED25520.1| DNA helicase II [Vibrio parahaemolyticus 16] Length = 723 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 41/157 (26%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 7 LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E+ ++ + G+ Sbjct: 65 KAAAEMRGRIEEL--------------------------------------MMGSASGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T H C I++ L+A + F I D + ++L+ Sbjct: 87 NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL 123 >gi|148642118|ref|YP_001272631.1| DNA helicase II [Methanobrevibacter smithii ATCC 35061] gi|148551135|gb|ABQ86263.1| DNA helicase II [Methanobrevibacter smithii ATCC 35061] Length = 1505 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 37/126 (29%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSH 80 E + D + + A GSGKT +L++RV + LL N P +LL +T TK AA E+ Sbjct: 462 EAAVMYDGKKPLLIEAGPGSGKTTVLIERV-KYLLNNKGIDPESLLVITFTKKAANELKT 520 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ S +D I ++ K+Q + TIH FC Sbjct: 521 RL-------SEETDNISELDVQKMQ---------------------------ISTIHGFC 546 Query: 141 EAIMQQ 146 I+++ Sbjct: 547 AKILEK 552 >gi|325291019|ref|YP_004267200.1| ATP-dependent helicase/nuclease subunit A [Syntrophobotulus glycolicus DSM 8271] gi|324966420|gb|ADY57199.1| ATP-dependent helicase/nuclease subunit A [Syntrophobotulus glycolicus DSM 8271] Length = 1273 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 46/199 (23%) Query: 44 KTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100 KT +LV+R++R + HP LL +T T AAAAEM R+ E Sbjct: 31 KTAVLVERIIRKITDRQHPVDIDKLLIVTFTNAAAAEMRERIAEA--------------- 75 Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160 I+K+ P+ ++ + +T+L + TIH+FC +++ N+ F IA Sbjct: 76 ISKVLEDNPDSPNIQRQ----LTLLHKA---SITTIHSFCLEVIRTNFHRINLDPDFRIA 128 Query: 161 DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRT---- 216 +E ++ A + L++ +EL + YE + + DE+ + L+ NR Sbjct: 129 NETEA------------ALMKLESLQELFEELYE--KETTDENFDELLECYGGNRDDQAL 174 Query: 217 ---ALKLIFFFFSYLWRRK 232 L L F S W K Sbjct: 175 QDMVLNLYNFIQSSPWPEK 193 >gi|256397096|ref|YP_003118660.1| ATP-dependent DNA helicase PcrA [Catenulispora acidiphila DSM 44928] gi|256363322|gb|ACU76819.1| ATP-dependent DNA helicase PcrA [Catenulispora acidiphila DSM 44928] Length = 806 Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ L+ +AHP ++L +T T AAAEM RV E++ + L Sbjct: 81 IIAGAGSGKTRVLAHRIAYLVGERHAHPGSILAITFTNKAAAEMRQRVEELVGPRARL-- 138 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + V T H+ C I++ A + Sbjct: 139 ------------------------------------MWVSTFHSACVRILRAQAKTAGLP 162 Query: 155 SHFAIADEEQSKKLI 169 S+F+I D S++L+ Sbjct: 163 SNFSIYDTADSQRLM 177 >gi|160902262|ref|YP_001567843.1| UvrD/REP helicase [Petrotoga mobilis SJ95] gi|160359906|gb|ABX31520.1| UvrD/REP helicase [Petrotoga mobilis SJ95] Length = 706 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 38/145 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A GSGKT ++ ++ LL P +L +T T+AAA EM RV + + D+ Sbjct: 82 IVAGPGSGKTRVITYKIAYLLNNGVEPENILLVTFTRAAAREMIERVKNVT---NRNIDK 138 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +L+ T H C +I++++ + + Sbjct: 139 MLAG-----------------------------------TFHHVCNSILRKYATLLDYKN 163 Query: 156 HFAIADEEQSKKLIEEAKKSTLASI 180 +++I D+E SK L++ AK + I Sbjct: 164 NYSILDKEDSKDLLKMAKSEYIKEI 188 >gi|148258686|ref|YP_001243271.1| ATP-dependent DNA helicase Rep [Bradyrhizobium sp. BTAi1] gi|146410859|gb|ABQ39365.1| ATP-dependent DNA helicase, Rep family [Bradyrhizobium sp. BTAi1] Length = 686 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 56/140 (40%), Gaps = 29/140 (20%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 P + A AGSGKT+ L RV LL+ A P +L +T ++ AAAEMS RV I Sbjct: 29 PGPPLLIIAGAGSGKTNTLAHRVAHLLVNGADPRRILLMTFSRRAAAEMSRRVERI---- 84 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + ++L + I T G T H +++ + Sbjct: 85 ---ARKVLGGQAEAI----------------------TAGLTWAGTFHGLGARMLRDYAE 119 Query: 150 EANITSHFAIADEEQSKKLI 169 I + F I D E S L+ Sbjct: 120 RIGIDAVFTIHDREDSADLM 139 >gi|13508080|ref|NP_110029.1| DNA helicase II [Mycoplasma pneumoniae M129] gi|2495149|sp|P75437|UVRD_MYCPN RecName: Full=Probable DNA helicase II homolog gi|1674187|gb|AAB96143.1| DNA helicase II [Mycoplasma pneumoniae M129] gi|301633619|gb|ADK87173.1| UvrD/REP helicase [Mycoplasma pneumoniae FH] Length = 715 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 V + AG+GKT I+ QR L +PS +L LT+T+ AA+EM R+LE++ H Sbjct: 26 VYSGAGTGKTTIISQRFAYLFNQKRINPSNILALTYTRKAASEMKQRILELLPEKYH 82 >gi|323345276|ref|ZP_08085499.1| ATP-dependent helicase [Prevotella oralis ATCC 33269] gi|323093390|gb|EFZ35968.1| ATP-dependent helicase [Prevotella oralis ATCC 33269] Length = 1102 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 9/155 (5%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH---LS 93 A+AG+GKT L R ++LL+ N +L +T T A EM R+L + +H S Sbjct: 35 ASAGTGKTFTLATRYIKLLIDNPDSFRNILAVTFTNKATEEMKMRILSQLYGIAHHLPDS 94 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 +E L+ ++ +I G + S+A+ L ++ +V+TI F ++I++ E ++ Sbjct: 95 EEYLN-KVIEITG-ATEEYIASQAKVALSNLVHNYSYFRVETIDTFFQSILRNLARELDL 152 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 T++ I E + + IE+ TL ++ ++EL Sbjct: 153 TANLRI---ELNDRQIEQQAVDTLIEELVPASKEL 184 >gi|196248138|ref|ZP_03146840.1| recombination helicase AddA [Geobacillus sp. G11MC16] gi|196212922|gb|EDY07679.1| recombination helicase AddA [Geobacillus sp. G11MC16] Length = 1242 Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 25/136 (18%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ + A LL +T T AAAAEM R+ Sbjct: 27 RDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDRLLVVTFTNAAAAEMKARI------ 80 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 E L E+ +P+ + + LL + T+H+FC +++++ Sbjct: 81 -----GEALEREL----ANRPHSLHLRRQLSLL-------NRASISTLHSFCLDVIRKYY 124 Query: 149 LEANITSHFAIADEEQ 164 ++ F IADE + Sbjct: 125 YLLDLDPSFRIADETE 140 >gi|138894263|ref|YP_001124716.1| ATP-dependent nuclease subunit A [Geobacillus thermodenitrificans NG80-2] gi|251764525|sp|A4IKW7|ADDA_GEOTN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|134265776|gb|ABO65971.1| ATP-dependent nuclease, subunit A [Geobacillus thermodenitrificans NG80-2] Length = 1242 Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 25/136 (18%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R V+A AGSGKT +LV+R+++ + A LL +T T AAAAEM R+ Sbjct: 27 RDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDRLLVVTFTNAAAAEMKARI------ 80 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 E L E+ +P+ + + LL + T+H+FC +++++ Sbjct: 81 -----GEALEREL----ANRPHSLHLRRQLSLL-------NRASISTLHSFCLDVIRKYY 124 Query: 149 LEANITSHFAIADEEQ 164 ++ F IADE + Sbjct: 125 YLLDLDPSFRIADETE 140 >gi|213968510|ref|ZP_03396653.1| DNA helicase II [Pseudomonas syringae pv. tomato T1] gi|301384752|ref|ZP_07233170.1| DNA-dependent helicase II [Pseudomonas syringae pv. tomato Max13] gi|302133168|ref|ZP_07259158.1| DNA-dependent helicase II [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926798|gb|EEB60350.1| DNA helicase II [Pseudomonas syringae pv. tomato T1] gi|330878141|gb|EGH12290.1| DNA-dependent helicase II [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330964448|gb|EGH64708.1| DNA-dependent helicase II [Pseudomonas syringae pv. actinidiae str. M302091] Length = 727 Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM HR+ +++ Sbjct: 29 VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +P G+ V T H +++ EA + Sbjct: 83 --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110 Query: 155 SHFAIADEEQSKKLIEEAKK 174 F I D + ++L++ + Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130 >gi|119773559|ref|YP_926299.1| DNA-dependent helicase II [Shewanella amazonensis SB2B] gi|119766059|gb|ABL98629.1| ATP-dependent DNA helicase UvrD [Shewanella amazonensis SB2B] Length = 721 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P S V A AGSGKT +L R+ LL + N P ++L +T T Sbjct: 7 LDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLLQVENQSPYSILAVTFTN 64 Query: 73 AAAAEMSHRVLEII 86 AAAEM RV +I+ Sbjct: 65 KAAAEMRERVEKIV 78 >gi|330952409|gb|EGH52669.1| DNA-dependent helicase II [Pseudomonas syringae Cit 7] gi|330970255|gb|EGH70321.1| DNA-dependent helicase II [Pseudomonas syringae pv. aceris str. M302273PT] Length = 727 Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM HR+ +++ Sbjct: 29 VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +P G+ V T H +++ EA + Sbjct: 83 --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110 Query: 155 SHFAIADEEQSKKLIEEAKK 174 F I D + ++L++ + Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130 >gi|289677452|ref|ZP_06498342.1| DNA-dependent helicase II [Pseudomonas syringae pv. syringae FF5] Length = 727 Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM HR+ +++ Sbjct: 29 VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +P G+ V T H +++ EA + Sbjct: 83 --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110 Query: 155 SHFAIADEEQSKKLIEEAKK 174 F I D + ++L++ + Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130 >gi|28872621|ref|NP_795240.1| DNA helicase II [Pseudomonas syringae pv. tomato str. DC3000] gi|28855877|gb|AAO58935.1| DNA helicase II [Pseudomonas syringae pv. tomato str. DC3000] Length = 727 Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM HR+ +++ Sbjct: 29 VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +P G+ V T H +++ EA + Sbjct: 83 --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110 Query: 155 SHFAIADEEQSKKLIEEAKK 174 F I D + ++L++ + Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130 >gi|320009010|gb|ADW03860.1| ATP-dependent DNA helicase PcrA [Streptomyces flavogriseus ATCC 33331] Length = 812 Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL HP +L +T T AA EM RV +++ Sbjct: 87 IVAGAGSGKTRVLTHRIAHLLAERGVHPGQILAITFTNKAAGEMKERVEDLV-------- 138 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + N + V T H+ C I+++ T Sbjct: 139 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKRLGFT 168 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 169 SSFSIYDAADSKRLM 183 >gi|94992155|ref|YP_600254.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS2096] gi|94545663|gb|ABF35710.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS2096] Length = 863 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 19/151 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L +L L T T AA E+ R+ + L + Sbjct: 58 VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 I A+ T Q K L L++ G + T+ AF + ++ ++ I+S Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLGQADIGTMDAFAQKVVSRYGYSIGISS 158 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 F I ++ + ++++ S L S ++ E Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 189 >gi|302670855|ref|YP_003830815.1| UvrD/REP family ATP-dependent DNA helicase [Butyrivibrio proteoclasticus B316] gi|302395328|gb|ADL34233.1| ATP-dependent DNA helicase UvrD/REP family [Butyrivibrio proteoclasticus B316] Length = 638 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%) Query: 34 AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 A V A GSGKT ++V+R+ L+ + PS++L +T TKAAA EM HR +I Sbjct: 25 AMVLAGPGSGKTFVIVERLRHLIEECSVDPSSVLVITFTKAAAIEMQHRFYKI 77 >gi|283852748|ref|ZP_06370012.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B] gi|283571829|gb|EFC19825.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B] Length = 733 Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 35/138 (25%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT +V R+ RL+ P+++L LT T+ AA EM Sbjct: 24 VIAGAGSGKTRTIVYRLARLVAGGVDPASILLLTFTRKAAQEM----------------- 66 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +S+A LL + G+ T HAF A ++++ A Sbjct: 67 ------------------LSRAGLLLAMGPDGVSGVSGGTFHAFAFATLRRYHAAAGYPD 108 Query: 156 HFAIADEEQSKKLIEEAK 173 F + D+ S+ ++ +AK Sbjct: 109 GFTVLDQADSEDVLGQAK 126 >gi|239943694|ref|ZP_04695631.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998] gi|239990145|ref|ZP_04710809.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 11379] gi|291447158|ref|ZP_06586548.1| ATP-dependent DNA helicase II [Streptomyces roseosporus NRRL 15998] gi|291350105|gb|EFE77009.1| ATP-dependent DNA helicase II [Streptomyces roseosporus NRRL 15998] Length = 812 Score = 48.9 bits (115), Expect = 6e-04, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL HP +L +T T AA EM RV +++ Sbjct: 87 IVAGAGSGKTRVLTHRIAHLLAERGTHPGQILAITFTNKAAGEMKERVEQLV-------- 138 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + N + V T H+ C I+++ + T Sbjct: 139 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKKLGFT 168 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 169 SSFSIYDAADSKRLM 183 >gi|331017795|gb|EGH97851.1| DNA-dependent helicase II [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 727 Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM HR+ +++ Sbjct: 29 VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +P G+ V T H +++ EA + Sbjct: 83 --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110 Query: 155 SHFAIADEEQSKKLIEEAKK 174 F I D + ++L++ + Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130 >gi|257485680|ref|ZP_05639721.1| DNA-dependent helicase II [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011968|gb|EGH92024.1| DNA-dependent helicase II [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 727 Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM HR+ +++ Sbjct: 29 VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +P G+ V T H +++ EA + Sbjct: 83 --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110 Query: 155 SHFAIADEEQSKKLIEEAKK 174 F I D + ++L++ + Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130 >gi|227548288|ref|ZP_03978337.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM 44291] gi|227079606|gb|EEI17569.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM 44291] Length = 764 Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 46/157 (29%), Positives = 66/157 (42%), Gaps = 48/157 (30%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ LL A P +L +T T AAAEM RV ++ Sbjct: 26 IVAGAGSGKTAVLTRRIAYLLQERAVAPWQILAITFTNKAAAEMKERVANLV-------- 77 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM-QQFPLEANI 153 P M V T H+ C I+ QQ L A + Sbjct: 78 -------------GPEAQRMW-----------------VATFHSVCVRILRQQAQLVAGL 107 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 ++F+I D + S++L L+ I D+N +LKK Sbjct: 108 NTNFSIYDSDDSRRL--------LSMIAKDHNLDLKK 136 >gi|152968347|ref|YP_001364131.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216] gi|151362864|gb|ABS05867.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216] Length = 1123 Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 16/151 (10%) Query: 35 WVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 +V A AG+GKT LV RV+ ++ H L +T T+ AA+E+ R+ E L Sbjct: 23 FVEAGAGTGKTTALVARVVHMVATGHLQHVGELAAITFTENAASELRSRIRE------GL 76 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 D +G+ + + R T + T+H I+Q+ PLEA Sbjct: 77 ED--------AARGEHRGTTYEPQERDCCRTAAAALDDAAIGTLHGTAIRILQEAPLEAG 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 + FA+A +L ++A + LA ++ D Sbjct: 129 LPPGFAVASATGGDELDDDAWEDFLADLLAD 159 >gi|330937394|gb|EGH41379.1| DNA-dependent helicase II [Pseudomonas syringae pv. pisi str. 1704B] Length = 727 Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM HR+ +++ Sbjct: 29 VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +P G+ V T H +++ EA + Sbjct: 83 --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110 Query: 155 SHFAIADEEQSKKLIEEAKK 174 F I D + ++L++ + Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130 >gi|330880966|gb|EGH15115.1| DNA-dependent helicase II [Pseudomonas syringae pv. glycinea str. race 4] Length = 727 Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM HR+ +++ Sbjct: 29 VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +P G+ V T H +++ EA + Sbjct: 83 --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110 Query: 155 SHFAIADEEQSKKLIEEAKK 174 F I D + ++L++ + Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130 >gi|289625507|ref|ZP_06458461.1| DNA-dependent helicase II [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649762|ref|ZP_06481105.1| DNA-dependent helicase II [Pseudomonas syringae pv. aesculi str. 2250] gi|330870933|gb|EGH05642.1| DNA-dependent helicase II [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330986942|gb|EGH85045.1| DNA-dependent helicase II [Pseudomonas syringae pv. lachrymans str. M301315] Length = 727 Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM HR+ +++ Sbjct: 29 VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +P G+ V T H +++ EA + Sbjct: 83 --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110 Query: 155 SHFAIADEEQSKKLIEEAKK 174 F I D + ++L++ + Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130 >gi|328884521|emb|CCA57760.1| ATP-dependent DNA helicase UvrD or PcrA [Streptomyces venezuelae ATCC 10712] Length = 816 Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL + HP +L +T T AA EM RV +++ Sbjct: 93 IVAGAGSGKTRVLTHRIAHLLGTRHVHPGQILAITFTNKAAGEMKERVEQLV-------- 144 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + N + V T H+ C I+++ + T Sbjct: 145 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKKLGFT 174 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 175 SSFSIYDAADSKRLM 189 >gi|309775326|ref|ZP_07670334.1| exonuclease RexA [Erysipelotrichaceae bacterium 3_1_53] gi|308916908|gb|EFP62640.1| exonuclease RexA [Erysipelotrichaceae bacterium 3_1_53] Length = 281 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 22/118 (18%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTKAAAAEMSHRVLEIITAW 89 R+ VSA+AGSGKT +L+ R++ L++ + H S ++L +T T+AAA EM R Sbjct: 11 RNILVSASAGSGKTTVLIARLMDLVMKD-HVSIDSILAMTFTEAAANEMKKR-------- 61 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 L+ E+ SA +T + K+ +++ +T ++T + TIH+FC +I+Q++ Sbjct: 62 --LATELQSAMLTA--QTEEEKAYITRQ----LTSIQTA---HISTIHSFCLSIIQEY 108 >gi|116328254|ref|YP_797974.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330978|ref|YP_800696.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120998|gb|ABJ79041.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124667|gb|ABJ75938.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 665 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 38/130 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AG+GKT +V R+ +L+ + S++L LT T+ AA EM R S + D+ Sbjct: 24 VLAGAGTGKTKTIVSRLAQLVSSGVPTSSILLLTFTRKAAREMLLRA-------SSIGDK 76 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 T++QG T H+FC ++++F ++S Sbjct: 77 ----RCTEVQG---------------------------GTFHSFCSGVLRKFAPVLGLSS 105 Query: 156 HFAIADEEQS 165 F I DE + Sbjct: 106 GFTILDESDT 115 >gi|320321765|gb|EFW77863.1| DNA-dependent helicase II [Pseudomonas syringae pv. glycinea str. B076] gi|320331515|gb|EFW87455.1| DNA-dependent helicase II [Pseudomonas syringae pv. glycinea str. race 4] Length = 727 Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM HR+ +++ Sbjct: 29 VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +P G+ V T H +++ EA + Sbjct: 83 --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110 Query: 155 SHFAIADEEQSKKLIEEAKK 174 F I D + ++L++ + Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130 >gi|300869706|ref|YP_003784577.1| exodeoxyribonuclease V beta chain [Brachyspira pilosicoli 95/1000] gi|300687405|gb|ADK30076.1| exodeoxyribonuclease V beta chain [Brachyspira pilosicoli 95/1000] Length = 308 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 31/183 (16%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 +VSA+AG+GKT + + L+LL S ++ +T TKAAA EM R+ Sbjct: 20 CFVSASAGTGKTTTITEAYLKLLENKKQKVSNIVVITFTKAAANEMLIRIRR-------- 71 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 KI+ K D + + IL K+ TIH+F +I++++ + N Sbjct: 72 ----------KIREKINEGKDTDYWKDIYKEIL---TNAKISTIHSFANSIVKEYSIYLN 118 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDN--NEELKKAFYEILEISNDEDIETLISD 210 + I +E E + + ++ DN +EE++K + I DE + I+D Sbjct: 119 MPPKITILEENND---FYEVIHNKILELLNDNEFSEEIRKNY----RIFTDESKDKFIND 171 Query: 211 IIS 213 I + Sbjct: 172 IFN 174 >gi|298489453|ref|ZP_07007464.1| ATP-dependent DNA helicase UvrD/PcrA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156027|gb|EFH97136.1| ATP-dependent DNA helicase UvrD/PcrA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 727 Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM HR+ +++ Sbjct: 29 VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +P G+ V T H +++ EA + Sbjct: 83 --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110 Query: 155 SHFAIADEEQSKKLIEEAKK 174 F I D + ++L++ + Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130 >gi|260775103|ref|ZP_05884002.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio coralliilyticus ATCC BAA-450] gi|260609020|gb|EEX35180.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio coralliilyticus ATCC BAA-450] Length = 723 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 41/157 (26%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 7 LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E+ ++ + G+ Sbjct: 65 KAAAEMRGRIEEL--------------------------------------MMGSASGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T H C I++ L+A + F I D + ++L+ Sbjct: 87 NGTFHGICHRILRAHYLDAKLPEDFQIIDTDDQQRLL 123 >gi|237801766|ref|ZP_04590227.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806704|ref|ZP_04593408.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024625|gb|EGI04681.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027818|gb|EGI07873.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str. 1_6] Length = 727 Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM HR+ +++ Sbjct: 29 VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +P G+ V T H +++ EA + Sbjct: 83 --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110 Query: 155 SHFAIADEEQSKKLIEEAKK 174 F I D + ++L++ + Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130 >gi|71734750|ref|YP_277224.1| DNA-dependent helicase II [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555303|gb|AAZ34514.1| DNA helicase II [Pseudomonas syringae pv. phaseolicola 1448A] Length = 727 Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM HR+ +++ Sbjct: 29 VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +P G+ V T H +++ EA + Sbjct: 83 --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110 Query: 155 SHFAIADEEQSKKLIEEAKK 174 F I D + ++L++ + Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130 >gi|118474774|ref|YP_891588.1| putative recombination protein RecB [Campylobacter fetus subsp. fetus 82-40] gi|118414000|gb|ABK82420.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter fetus subsp. fetus 82-40] Length = 921 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 23/137 (16%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 +R + A+AGSGKT L R + L+L + +L LT TK AA EM R II A+ Sbjct: 4 SRYLALEASAGSGKTFALSVRFIALILQGNDIAKILALTFTKKAANEMKSR---IIDAFC 60 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHL----LITILETPGG------LKVQTIHAFC 140 +L + KK +++ K L ++++ + G LK+ T +F Sbjct: 61 NLHE----------SSKKNELNELEKILELSAVDILSLRDKYMGNFLKNELKISTFDSFF 110 Query: 141 EAIMQQFPLEANITSHF 157 I++QF L I F Sbjct: 111 TMILRQFSLNLGIMPDF 127 >gi|66048289|ref|YP_238130.1| DNA-dependent helicase II [Pseudomonas syringae pv. syringae B728a] gi|63258996|gb|AAY40092.1| UvrD/REP helicase [Pseudomonas syringae pv. syringae B728a] Length = 727 Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM HR+ +++ Sbjct: 29 VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +P G+ V T H +++ EA + Sbjct: 83 --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110 Query: 155 SHFAIADEEQSKKLIEEAKK 174 F I D + ++L++ + Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130 >gi|260577850|ref|ZP_05845783.1| ATP-dependent helicase PcrA [Corynebacterium jeikeium ATCC 43734] gi|258604009|gb|EEW17253.1| ATP-dependent helicase PcrA [Corynebacterium jeikeium ATCC 43734] Length = 950 Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A AGSGKT +L +R+ LL P +L +T T AAAEM RV++++ Sbjct: 153 IVAGAGSGKTSVLTRRIAYLLANGVAPWQILAITFTNKAAAEMRERVVDMV--------- 203 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANIT 154 P M V T H+FC +++ L + Sbjct: 204 ------------GPQAERMW-----------------VSTFHSFCVRVLRANAHLAPGLN 234 Query: 155 SHFAIADEEQSKKLI 169 ++F+I D + SK+L+ Sbjct: 235 TNFSIYDSDDSKRLM 249 >gi|323347961|gb|EGA82220.1| Srs2p [Saccharomyces cerevisiae Lalvin QA23] Length = 1174 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 16 LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 L+SQ ++Q A+ D TR V A G+GKT +L RV L+L + HP ++ T T Sbjct: 11 LVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTTFTN 70 Query: 73 AAAAEMSHRVLEIITA 88 AA EM R+ E++ Sbjct: 71 KAANEMKERLQEMLRG 86 >gi|312881427|ref|ZP_07741222.1| DNA-dependent helicase II [Vibrio caribbenthicus ATCC BAA-2122] gi|309370909|gb|EFP98366.1| DNA-dependent helicase II [Vibrio caribbenthicus ATCC BAA-2122] Length = 724 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 39/141 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ L+ + A P +++ +T T AAAEM R+ E+ Sbjct: 22 PIENLLVLAGAGSGKTRVLVHRIAWLMSVEEASPFSIMSVTFTNKAAAEMRGRIEEL--- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 ++ + G+ T H C I++ Sbjct: 79 -----------------------------------MMGSASGMWNGTFHGLCHRILRAHY 103 Query: 149 LEANITSHFAIADEEQSKKLI 169 L+A + F I D + ++L+ Sbjct: 104 LDAKLPEDFQIIDSDDQQRLL 124 >gi|297562750|ref|YP_003681724.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847198|gb|ADH69218.1| UvrD/REP helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 1150 Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 8/87 (9%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEM 78 +SE + A P V A AGSGK+ + RV+ L+AN H P +L LT T+ A AE+ Sbjct: 49 QSEVICA--PLEPGVVIAGAGSGKSETMASRVV-WLVANGHVRPEQILGLTFTRKATAEL 105 Query: 79 SHRV---LEIITAWSHLSDEILSAEIT 102 + RV LE + A L +E+L E T Sbjct: 106 AERVRKRLEQLRATEQLPEELLDGEPT 132 >gi|28899787|ref|NP_799392.1| DNA-dependent helicase II [Vibrio parahaemolyticus RIMD 2210633] gi|260362520|ref|ZP_05775446.1| DNA helicase II [Vibrio parahaemolyticus K5030] gi|260877200|ref|ZP_05889555.1| DNA helicase II [Vibrio parahaemolyticus AN-5034] gi|260897243|ref|ZP_05905739.1| DNA helicase II [Vibrio parahaemolyticus Peru-466] gi|260901376|ref|ZP_05909771.1| DNA helicase II [Vibrio parahaemolyticus AQ4037] gi|28808039|dbj|BAC61276.1| DNA helicase II [Vibrio parahaemolyticus RIMD 2210633] gi|308088957|gb|EFO38652.1| DNA helicase II [Vibrio parahaemolyticus Peru-466] gi|308094142|gb|EFO43837.1| DNA helicase II [Vibrio parahaemolyticus AN-5034] gi|308107188|gb|EFO44728.1| DNA helicase II [Vibrio parahaemolyticus AQ4037] gi|308112661|gb|EFO50201.1| DNA helicase II [Vibrio parahaemolyticus K5030] Length = 724 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 8 LDDLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E+ ++ + G+ Sbjct: 66 KAAAEMRGRIEEL--------------------------------------MMGSASGMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C I++ L+A + F I D + ++L++ Sbjct: 88 NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLLK 125 >gi|6322369|ref|NP_012443.1| Srs2p [Saccharomyces cerevisiae S288c] gi|83305803|sp|P12954|SRS2_YEAST RecName: Full=ATP-dependent DNA helicase SRS2 gi|4277|emb|CAA33706.1| helicase [Saccharomyces cerevisiae] gi|521096|emb|CAA54361.1| RADH [Saccharomyces cerevisiae] gi|1008264|emb|CAA89385.1| HPR5 [Saccharomyces cerevisiae] gi|285812810|tpg|DAA08708.1| TPA: Srs2p [Saccharomyces cerevisiae S288c] Length = 1174 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 16 LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 L+SQ ++Q A+ D TR V A G+GKT +L RV L+L + HP ++ T T Sbjct: 11 LVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTTFTN 70 Query: 73 AAAAEMSHRVLEIITA 88 AA EM R+ E++ Sbjct: 71 KAANEMKERLQEMLRG 86 >gi|257459106|ref|ZP_05624225.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter gracilis RM3268] gi|257443491|gb|EEV18615.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter gracilis RM3268] Length = 479 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 58/124 (46%), Gaps = 6/124 (4%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A+AGSGKT L R + L+L + +L LT TK AAAEM R++E + D L Sbjct: 12 ASAGSGKTFNLAVRFIELVLKGEPINEILALTFTKKAAAEMKTRIVEKFQNLLIVRDGAL 71 Query: 98 --SAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 S E+ +I +D ++ R LL L L V T AF ++ F L + I Sbjct: 72 VPSPELAQICEDLNMSADEVLAAQRRLLPKFLNE--SLNVFTFDAFFAKALRSFALNSGI 129 Query: 154 TSHF 157 F Sbjct: 130 DPGF 133 >gi|302684905|ref|XP_003032133.1| hypothetical protein SCHCODRAFT_55730 [Schizophyllum commune H4-8] gi|300105826|gb|EFI97230.1| hypothetical protein SCHCODRAFT_55730 [Schizophyllum commune H4-8] Length = 697 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 38/142 (26%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-LTHTKAAAAEMSHRVLEIIT 87 DP + A GSGKT +L R+ L+L + P +C +T T AA EM R Sbjct: 18 DPAIPLQILAGPGSGKTKVLTSRIAYLILHHKIPPYAICAVTFTNKAANEMRER------ 71 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 +TK+ G E +++ T HA C ++++ Sbjct: 72 -------------LTKLLGP------------------EQTSQIRMGTFHALCAQFLRRY 100 Query: 148 PLEANITSHFAIADEEQSKKLI 169 + + S+F I D +++KK+I Sbjct: 101 GSKIGVDSNFTICDIDEAKKII 122 >gi|225012049|ref|ZP_03702486.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A] gi|225003604|gb|EEG41577.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A] Length = 1059 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 20/156 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL 92 ++A AGSGKT+ LV R L LL + + + LL LT T A EM R+LE + S+ Sbjct: 21 INAAAGSGKTYTLVLRYLIQLLGSKNSKSYRNLLALTFTNKAVNEMKERILETLLDLSNN 80 Query: 93 S------DEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 S E L +E I I+ + KA +L IL G + T+ F I+ Sbjct: 81 SLKENNIGETLCSELNIEPIELAR-------KADKMLHQILFEYGSFDIITLDKFTHRII 133 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 + F E + F + + +S L+EE S + + Sbjct: 134 RSFSRELQLPYGFEVVLDPKS--LLEETVNSIIDKV 167 >gi|190409409|gb|EDV12674.1| DNA helicase [Saccharomyces cerevisiae RM11-1a] gi|256271681|gb|EEU06720.1| Srs2p [Saccharomyces cerevisiae JAY291] gi|290771135|emb|CAY80687.2| Srs2p [Saccharomyces cerevisiae EC1118] Length = 1174 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 16 LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 L+SQ ++Q A+ D TR V A G+GKT +L RV L+L + HP ++ T T Sbjct: 11 LVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTTFTN 70 Query: 73 AAAAEMSHRVLEIITA 88 AA EM R+ E++ Sbjct: 71 KAANEMKERLQEMLRG 86 >gi|151945237|gb|EDN63486.1| DNA helicase [Saccharomyces cerevisiae YJM789] Length = 1174 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 16 LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 L+SQ ++Q A+ D TR V A G+GKT +L RV L+L + HP ++ T T Sbjct: 11 LVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTTFTN 70 Query: 73 AAAAEMSHRVLEIITA 88 AA EM R+ E++ Sbjct: 71 KAANEMKERLQEMLRG 86 >gi|330890591|gb|EGH23252.1| DNA-dependent helicase II [Pseudomonas syringae pv. mori str. 301020] Length = 727 Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM HR+ +++ Sbjct: 29 VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +P G+ V T H +++ EA + Sbjct: 83 --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110 Query: 155 SHFAIADEEQSKKLIEEAKK 174 F I D + ++L++ + Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130 >gi|325298710|ref|YP_004258627.1| ATP-dependent DNA helicase, RecQ family [Bacteroides salanitronis DSM 18170] gi|324318263|gb|ADY36154.1| ATP-dependent DNA helicase, RecQ family [Bacteroides salanitronis DSM 18170] Length = 1644 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 51/86 (59%), Gaps = 2/86 (2%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLL 66 Q++++ +S+ + E ++++ +R V+A GSGKT +LV ++ LLL + LL Sbjct: 1084 QKYNQLFGQLSKRQME-IISNKDSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLL 1142 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHL 92 LT ++AAA E R++E+I +H Sbjct: 1143 MLTFSRAAATEFKQRLMELIGNAAHF 1168 >gi|297192605|ref|ZP_06910003.1| ATP-dependent DNA helicase II [Streptomyces pristinaespiralis ATCC 25486] gi|297151430|gb|EFH31159.1| ATP-dependent DNA helicase II [Streptomyces pristinaespiralis ATCC 25486] Length = 811 Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL HP +L +T T AA EM RV +++ Sbjct: 86 IVAGAGSGKTRVLTHRIAHLLGTRRVHPGQILAITFTNKAAGEMKERVEQLV-------- 137 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + N + V T H+ C I+++ + T Sbjct: 138 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKKLGFT 167 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 168 SSFSIYDAADSKRLM 182 >gi|326334139|ref|ZP_08200365.1| ATP-dependent DNA helicase PcrA [Nocardioidaceae bacterium Broad-1] gi|325948064|gb|EGD40178.1| ATP-dependent DNA helicase PcrA [Nocardioidaceae bacterium Broad-1] Length = 819 Score = 48.5 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L +R+ L+ AHP ++L +T T AAAEM RV ++ Sbjct: 60 VVAGAGSGKTRVLTRRIAWLISQRGAHPGSILAITFTNKAAAEMKQRVEALV-------- 111 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 GK +AR + ++ T H+ C I+++ + + Sbjct: 112 -----------GK--------RARIMWVS-----------TFHSACVRILRKEIDKVGLK 141 Query: 155 SHFAIADEEQSKKLIE 170 S+F+I D + K+L++ Sbjct: 142 SNFSIYDAQDQKRLMQ 157 >gi|71903240|ref|YP_280043.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS6180] gi|123640147|sp|Q48UB8|ADDA_STRPM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|71802335|gb|AAX71688.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS6180] Length = 1222 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 19/151 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L +L L T T AA E+ R+ + L + Sbjct: 58 VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 I A+ T Q K L L++ G + T+ AF + ++ ++ I+S Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLGQADIGTMDAFAQKVVSRYGYSIGISS 158 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 F I ++ + ++++ S L S ++ E Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 189 >gi|73663117|ref|YP_301898.1| putative ATP-dependent nuclease subunit A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642147|sp|Q49WA6|ADDA_STAS1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|72495632|dbj|BAE18953.1| putative ATP-dependent nuclease subunit A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 1219 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 92/191 (48%), Gaps = 35/191 (18%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R++ R++ LL +T T A+A EM RV Sbjct: 31 VAAAAGSGKTAVLVERIIQRIIRDEIDVDKLLVVTFTNASAREMKQRV----------DQ 80 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 I A I + P+ + + R + I + ++ T+H+FC ++QQ +I Sbjct: 81 RIQEASI-----ENPDNAHLKNQR---VKIHQA----QISTLHSFCLKLIQQHYDVLDID 128 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIIS 213 +F + E ++ L+E+ T+ ++ + + L F ++ E +S+D + + L Sbjct: 129 PNFRTSSEAENILLLEQ----TIDEVLERHYDILDPHFIDLTEQLSSDRNDDQL------ 178 Query: 214 NRTALKLIFFF 224 R +K +++F Sbjct: 179 -RNTIKEMYYF 188 >gi|330961415|gb|EGH61675.1| DNA-dependent helicase II [Pseudomonas syringae pv. maculicola str. ES4326] Length = 727 Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM HR+ +++ Sbjct: 29 VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLMGI------ 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +P G+ V T H +++ EA + Sbjct: 83 --------------------------------SPAGMWVGTFHGLAHRLLRAHWQEAGLV 110 Query: 155 SHFAIADEEQSKKLIEEAKK 174 F I D + ++L++ + Sbjct: 111 QTFQILDSDDQQRLVKRVMR 130 >gi|281355725|ref|ZP_06242219.1| Exodeoxyribonuclease V [Victivallis vadensis ATCC BAA-548] gi|281318605|gb|EFB02625.1| Exodeoxyribonuclease V [Victivallis vadensis ATCC BAA-548] Length = 1235 Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 4/122 (3%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AG+GKT+ + V+R +L P LL +T+T+AAAAE++ R+ ++++ + Sbjct: 20 IEAAAGTGKTYNIQNLVVRAVLERDIPIEKLLVVTYTRAAAAELAGRIRQVLSGTLAALE 79 Query: 95 EILSAEI---TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 + L E ++ + + R L T L V TIH FC+ ++++ E+ Sbjct: 80 KRLPPESGREAQLVARALETLTSEECRKRLRTALFDFDAATVTTIHGFCQKVLRENAFES 139 Query: 152 NI 153 I Sbjct: 140 GI 141 >gi|293115645|ref|ZP_06604556.1| ATP-dependent nuclease subunit A [Butyrivibrio crossotus DSM 2876] gi|292809250|gb|EFF68455.1| ATP-dependent nuclease subunit A [Butyrivibrio crossotus DSM 2876] Length = 1187 Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 25/159 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 VSA AGSGKT +LV+R++ + +P ++ +T TK+AA EM R+ + Sbjct: 34 VSAAAGSGKTAVLVERIVSRVFDERNPVDIDRIVIVTFTKSAAGEMKERLTKRF------ 87 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 ++IL A+ G + ++ H K+ TI +FC I++ + Sbjct: 88 -EDILKADC----GNRRAIRQIALINH-----------AKITTIDSFCSYILKNYYNTIG 131 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + IAD+ +++ + E+ L + +N+E L A Sbjct: 132 YEPSYRIADKGETELIKEDVYNELLEERLKNNDENLITA 170 >gi|302869847|ref|YP_003838484.1| ATP-dependent DNA helicase PcrA [Micromonospora aurantiaca ATCC 27029] gi|302572706|gb|ADL48908.1| ATP-dependent DNA helicase PcrA [Micromonospora aurantiaca ATCC 27029] Length = 803 Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL A + HP ++ +T T AA EM RV ++ + L Sbjct: 61 IVAGAGSGKTRVLTNRIAYLLAARDVHPGEIIAITFTNKAAGEMKERVAALVGPRARL-- 118 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + V T H+ C I++ A + Sbjct: 119 ------------------------------------MWVSTFHSACVRILRAEHEHAGLK 142 Query: 155 SHFAIADEEQSKKLIE 170 S F+I D + S++L++ Sbjct: 143 STFSIYDADDSRRLMQ 158 >gi|302558895|ref|ZP_07311237.1| ATP-dependent DNA helicase PcrA [Streptomyces griseoflavus Tu4000] gi|302476513|gb|EFL39606.1| ATP-dependent DNA helicase PcrA [Streptomyces griseoflavus Tu4000] Length = 825 Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL + HP +L +T T AA EM RV +++ Sbjct: 90 IVAGAGSGKTRVLTHRIAHLLAERHVHPGQILAITFTNKAAGEMKERVEQLV-------- 141 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + N + V T H+ C I+++ T Sbjct: 142 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKRLGFT 171 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 172 SSFSIYDAADSKRLM 186 >gi|331699083|ref|YP_004335322.1| ATP-dependent DNA helicase PcrA [Pseudonocardia dioxanivorans CB1190] gi|326953772|gb|AEA27469.1| ATP-dependent DNA helicase PcrA [Pseudonocardia dioxanivorans CB1190] Length = 800 Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL + HP ++ +T T AAAEM RV ++ Sbjct: 44 IVAGAGSGKTRVLTHRIAWLLAERHVHPGEIMSITFTNKAAAEMKERVDALV-------- 95 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G++ N + V T H+ C I+++ + Sbjct: 96 -----------GRRAN-------------------AMWVSTFHSMCVRILRREAKHLGVR 125 Query: 155 SHFAIADEEQSKKLI 169 S F++ D + S++L+ Sbjct: 126 SAFSVYDADDSRRLV 140 >gi|318058788|ref|ZP_07977511.1| ATP-dependent DNA helicase II [Streptomyces sp. SA3_actG] gi|318075472|ref|ZP_07982804.1| ATP-dependent DNA helicase II [Streptomyces sp. SA3_actF] Length = 829 Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL HP +L +T T AA EM RV +++ + Sbjct: 91 IVAGAGSGKTRVLTHRIAYLLGRRGVHPGAILAITFTNKAAGEMKERVEQLVGPRA---- 146 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + V T H+ C I+++ + T Sbjct: 147 ----------------------------------GAMWVSTFHSACVRILRRESKKLGFT 172 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 173 SSFSIYDAADSKRLM 187 >gi|251764599|sp|Q1JCJ8|ADDA_STRPB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA Length = 1222 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 19/151 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L +L L T T AA E+ R+ + L + Sbjct: 58 VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 I A+ T Q K L L++ G + T+ AF + ++ ++ I+S Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLGQADIGTMDAFAQKVVSRYGYSIGISS 158 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 F I ++ + ++++ S L S ++ E Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 189 >gi|94988280|ref|YP_596381.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS9429] gi|251764560|sp|Q1JMH5|ADDA_STRPC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|94541788|gb|ABF31837.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS9429] Length = 1222 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 19/151 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L +L L T T AA E+ R+ + L + Sbjct: 58 VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 I A+ T Q K L L++ G + T+ AF + ++ ++ I+S Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLGQADIGTMDAFAQKVVSRYGYSIGISS 158 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 F I ++ + ++++ S L S ++ E Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 189 >gi|15639883|ref|NP_219333.1| ATP-dependent nuclease, subunit A, putative [Treponema pallidum subsp. pallidum str. Nichols] gi|189026121|ref|YP_001933893.1| ATP-dependent nuclease, subunit A [Treponema pallidum subsp. pallidum SS14] gi|3323214|gb|AAC65853.1| ATP-dependent nuclease, subunit A, putative [Treponema pallidum subsp. pallidum str. Nichols] gi|189018696|gb|ACD71314.1| possible ATP-dependent nuclease, subunit A [Treponema pallidum subsp. pallidum SS14] gi|291060257|gb|ADD72992.1| ATP-dependent DNA helicase UvrD [Treponema pallidum subsp. pallidum str. Chicago] Length = 1239 Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 14/143 (9%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSH 80 +EQ A + +A V+A AGSGKT ++ R + L++ A P ++ LT T+ AA EM+ Sbjct: 14 AEQRRAVFSSHNAVVTAGAGSGKTKVISARYIHLVVERAIPVERIVVLTFTRKAAMEMAR 73 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ E D L + Q + +++ + +AR L G ++ T+ AF Sbjct: 74 RIYE---------DLRLCVQSASAQPEPGHEAYLLRAREALARF----GEARIMTLDAFS 120 Query: 141 EAIMQQFPLEANITSHFAIADEE 163 I + I F++++EE Sbjct: 121 HEIARVGARFFGIAPDFSLSEEE 143 >gi|302519556|ref|ZP_07271898.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB78] gi|302428451|gb|EFL00267.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB78] Length = 829 Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL HP +L +T T AA EM RV +++ + Sbjct: 91 IVAGAGSGKTRVLTHRIAYLLGRRGVHPGAILAITFTNKAAGEMKERVEQLVGPRA---- 146 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + V T H+ C I+++ + T Sbjct: 147 ----------------------------------GAMWVSTFHSACVRILRRESKKLGFT 172 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 173 SSFSIYDAADSKRLM 187 >gi|254383079|ref|ZP_04998433.1| ATP-dependent DNA helicase II [Streptomyces sp. Mg1] gi|194341978|gb|EDX22944.1| ATP-dependent DNA helicase II [Streptomyces sp. Mg1] Length = 847 Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 54/135 (40%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL A HP +L +T T AA EM RV ++ Sbjct: 86 IVAGAGSGKTRVLTHRIGHLLAARGVHPGQILAITFTNKAAGEMRERVEGLV-------- 137 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + N + V T H+ C I+++ T Sbjct: 138 -----------GPRAN-------------------AMWVSTFHSACVRILRRESKRLGFT 167 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 168 SSFSIYDAADSKRLM 182 >gi|262340924|ref|YP_003283779.1| ATP-dependent DNA helicase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272261|gb|ACY40169.1| ATP-dependent DNA helicase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 709 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ R++ ++ +PS +L LT TK AA EM HR+ +I Sbjct: 20 VLAGAGSGKTRVITYRIVHMIQNIGINPSNILALTFTKKAAKEMKHRISNMI 71 >gi|207344042|gb|EDZ71311.1| YJL092Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 987 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 16 LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 L+SQ ++Q A+ D TR V A G+GKT +L RV L+L + HP ++ T T Sbjct: 11 LVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTTFTN 70 Query: 73 AAAAEMSHRVLEIITA 88 AA EM R+ E++ Sbjct: 71 KAANEMKERLQEMLRG 86 >gi|323354422|gb|EGA86261.1| Srs2p [Saccharomyces cerevisiae VL3] Length = 1143 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 16 LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 L+SQ ++Q A+ D TR V A G+GKT +L RV L+L + HP ++ T T Sbjct: 11 LVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTTFTN 70 Query: 73 AAAAEMSHRVLEIITA 88 AA EM R+ E++ Sbjct: 71 KAANEMKERLQEMLRG 86 >gi|332107681|gb|EGJ08905.1| UvrD/REP helicase [Rubrivivax benzoatilyticus JA2] Length = 675 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 31/53 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++V ++ RLL A P + +T T AAAEM R +I+ Sbjct: 25 VLAGAGSGKTRVIVHKIARLLQAGLEPRQIAAITFTNKAAAEMRERAKQIVGG 77 >gi|91977214|ref|YP_569873.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5] gi|91683670|gb|ABE39972.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5] Length = 688 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 36/63 (57%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 E + + P V A AGSGKT+ L RV L++ A P +L +T ++ AAAEM+ RV Sbjct: 20 EHGVGAGPCPPLLVIAGAGSGKTNTLAHRVAHLVVNGADPHRILLMTFSRRAAAEMTRRV 79 Query: 83 LEI 85 I Sbjct: 80 ERI 82 >gi|329121403|ref|ZP_08250028.1| putative ATP-dependent deoxyribonuclease subunit A [Dialister micraerophilus DSM 19965] gi|327469693|gb|EGF15160.1| putative ATP-dependent deoxyribonuclease subunit A [Dialister micraerophilus DSM 19965] Length = 1285 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 3/50 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV 82 +SA AGSGKT +LV+R++R + P + LL LT TKAAA+EM RV Sbjct: 23 LSAAAGSGKTAVLVERIIRRITDLDDPTDVTDLLVLTFTKAAASEMKSRV 72 >gi|225157628|ref|ZP_03725018.1| UvrD/REP helicase [Opitutaceae bacterium TAV2] gi|224802695|gb|EEG20948.1| UvrD/REP helicase [Opitutaceae bacterium TAV2] Length = 678 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/73 (43%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID + EQL A + P V A AGSGKT L RV LL P +L LT T Sbjct: 21 IDFAYELNEEQLAAVTAPPGPLLVLAGAGSGKTRTLTYRVAWLLAQGIKPWQILLLTFTN 80 Query: 73 AAAAEMSHRVLEI 85 AA EM HRV ++ Sbjct: 81 KAAKEMLHRVQDL 93 >gi|320168377|gb|EFW45276.1| ATP-dependent DNA helicase Rep [Capsaspora owczarzaki ATCC 30864] Length = 1072 Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 37/157 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 +DL S + ++ + P V A GSGKT ++V RV L+ P T+L +T T Sbjct: 17 VDLSSMNEQQRAAVTAPGGVVCVVAGPGSGKTRVIVHRVAHLIQTGTDPRTILLVTFTNK 76 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ ++ L+ +++ Sbjct: 77 AAAEMKSRLQLLVQ--EPLAKLVMAG---------------------------------- 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H+ C +++ + ++S+F+I D E K L++ Sbjct: 101 -TFHSVCARFLRRHARDVGLSSNFSIIDTEDVKALLK 136 >gi|254446951|ref|ZP_05060418.1| exodeoxyribonuclease V, beta subunit [gamma proteobacterium HTCC5015] gi|198263090|gb|EDY87368.1| exodeoxyribonuclease V, beta subunit [gamma proteobacterium HTCC5015] Length = 1215 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 20/154 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLL--------ANAH-----PSTLLCLTHTKAAAAEMSHRV 82 + A+AG+GKT L LRL+L A+ H P +L +T T+AA E+ R+ Sbjct: 11 IEASAGTGKTFTLAGLYLRLVLGHGDSLQSADGHAQALRPQDILVMTFTEAATQELRERI 70 Query: 83 LEIIT----AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 E + A+S + L +T + P++ S+ HLL + + TIH Sbjct: 71 RERLAEAAEAFSGRLKDKLDPLLTTLLNDYPDEQ-HSRCAHLLNAAAQDMDEAAITTIHG 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 FC+ ++++ ++ S F ++ +E K L +++ Sbjct: 130 FCQRMLREHAFDSR--SLFNLSLQEDEKTLTDDS 161 >gi|116619175|ref|YP_821331.1| UvrD/REP helicase [Candidatus Solibacter usitatus Ellin6076] gi|116222337|gb|ABJ81046.1| UvrD/REP helicase [Candidatus Solibacter usitatus Ellin6076] Length = 1088 Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 19/131 (14%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 +D RS V A+AG+GKT LV R++ ++ A T++ +T T AAA M RV Sbjct: 7 GADLERSWVVEASAGTGKTTALVDRMVEVIAAGTPVETIVAVTFTHAAAGNMKLRV---- 62 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 H + +AE + + + S R + TIHAFC ++++ Sbjct: 63 ---RHELERRRAAETDEAIRLRLADAARSLDRAF------------IGTIHAFCAQLLRR 107 Query: 147 FPLEANITSHF 157 P+EA + F Sbjct: 108 RPVEAQVDPVF 118 >gi|315501309|ref|YP_004080196.1| ATP-dependent DNA helicase pcra [Micromonospora sp. L5] gi|315407928|gb|ADU06045.1| ATP-dependent DNA helicase PcrA [Micromonospora sp. L5] Length = 803 Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL A + HP ++ +T T AA EM RV ++ + L Sbjct: 61 IVAGAGSGKTRVLTNRIAYLLAARDVHPGEIIAITFTNKAAGEMKERVAALVGPRARL-- 118 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + V T H+ C I++ A + Sbjct: 119 ------------------------------------MWVSTFHSACVRILRAEHEHAGLK 142 Query: 155 SHFAIADEEQSKKLIE 170 S F+I D + S++L++ Sbjct: 143 STFSIYDADDSRRLMQ 158 >gi|228473051|ref|ZP_04057808.1| UvrD/REP family helicase [Capnocytophaga gingivalis ATCC 33624] gi|228275633|gb|EEK14410.1| UvrD/REP family helicase [Capnocytophaga gingivalis ATCC 33624] Length = 1071 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 90/193 (46%), Gaps = 23/193 (11%) Query: 37 SANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKAAAAEMSHRVLEIITAWS--- 90 +A+AGSGKT LV+ L+L+LA + TLL +T T A EM RV+ + +S Sbjct: 8 NASAGSGKTFTLVKSFLKLILATKNVEAYKTLLAITFTNKAVNEMKERVINQLLLFSTPD 67 Query: 91 --------HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 SD+I+ ++ + + ++ +++ +L IL G + TI F + Sbjct: 68 TLVEEGEKKASDDIMFVQLAQ-ELLLSHEELQERSQKVLKHILHNYAGFTITTIDGFNQR 126 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI----LEI 198 +++ F + + +F + E + L+ A ++ + N+ L K E +E Sbjct: 127 LIRSFAFDLKLNPNFEVFLE--TDDLLRLAIENLFKKA--NENQLLTKLLLEFSRDKIEE 182 Query: 199 SNDEDIETLISDI 211 D DIET + DI Sbjct: 183 DKDWDIETELFDI 195 >gi|323144233|ref|ZP_08078864.1| putative exodeoxyribonuclease V, beta subunit [Succinatimonas hippei YIT 12066] gi|322415985|gb|EFY06688.1| putative exodeoxyribonuclease V, beta subunit [Succinatimonas hippei YIT 12066] Length = 1304 Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 27/154 (17%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPST-----------LLCLTHTKAAAAEMSHR 81 S+ + A+AG+GKT + VLRLLL + + T +L +T T+AAA+++ R Sbjct: 18 SSLIEASAGTGKTFTITYLVLRLLLGSGNAKTRLKQGPLDLDQILIVTFTRAAASDLRKR 77 Query: 82 VLEII----TAWSHLS--------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 + E I A+ + DE L+ + ++QGK + D S+ + ++T Sbjct: 78 IRENIRQAKEAFDEFAKDPEYRAKDEPLNDLLVEMQGKGISPKDCSQILNKAERGIDTAA 137 Query: 130 GLKVQTIHAFC-EAIMQQFPLEANITSHFAIADE 162 + TIH+FC A+ Q + EA A+ D+ Sbjct: 138 ---ICTIHSFCNRALNQIYAFEAGEAFETALTDD 168 >gi|163754620|ref|ZP_02161742.1| putative helicase [Kordia algicida OT-1] gi|161325561|gb|EDP96888.1| putative helicase [Kordia algicida OT-1] Length = 1084 Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 11/131 (8%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +A+AGSGKT+ LV+ LR+LL + T +L +T T A AEM R+++ + ++ Sbjct: 46 NASAGSGKTYTLVKDYLRILLKSVQKDTYKQILAVTFTNKAVAEMKARIIQNLNLFAF-- 103 Query: 94 DEI-----LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 DE + E+ + P + K++ +L +IL +V TI F ++++ F Sbjct: 104 DEASKNSPMFVELAEDLKLHPAQL-QQKSKDVLKSILHNYAFFEVSTIDKFTHSVIRTFA 162 Query: 149 LEANITSHFAI 159 + + +F + Sbjct: 163 YDLKLPLNFEV 173 >gi|259502070|ref|ZP_05744972.1| ATP-dependent nuclease [Lactobacillus antri DSM 16041] gi|259169983|gb|EEW54478.1| ATP-dependent nuclease [Lactobacillus antri DSM 16041] Length = 1386 Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 22/153 (14%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78 T ++Q SD R+ VSA+AGSGKT +LV R + L+ A +L +T T AAA M Sbjct: 7 TPAQQQAISDRDRNIIVSASAGSGKTAVLVNRAVALIKEGRATVDRMLLVTFTDAAAKNM 66 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 ++ + + E+ AE P D+ + + + + + TIHA Sbjct: 67 RDKIRQRL-------QEVAQAE--------PRLRDLMNEQVNRLAVAD------ISTIHA 105 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 FC +++++ + F + ++ + L++E Sbjct: 106 FCLKLIKRYYFLIGLDPQFRLLTDDTERLLLQE 138 >gi|323141943|ref|ZP_08076800.1| putative ATP-dependent nuclease subunit A [Phascolarctobacterium sp. YIT 12067] gi|322413578|gb|EFY04440.1| putative ATP-dependent nuclease subunit A [Phascolarctobacterium sp. YIT 12067] Length = 1140 Score = 48.1 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 82/167 (49%), Gaps = 26/167 (15%) Query: 23 EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMS 79 EQ LA + +S + A AGSGKT++L++R +++L ++ +P+ ++ +T T+ AA E+ Sbjct: 18 EQALAINTIKSNVSLLAGAGSGKTYVLMKRFVQILRSDLSVNPTNIVAITFTRKAADEIK 77 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR--HLLITILETPGGLKVQTIH 137 RV + + + + ++D+ + R L + P + TIH Sbjct: 78 GRVRQAVG-----------------ECVEQAQTDLERLRWQEHLQKVESAP----ISTIH 116 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 + C I++ P+E + F I ++ +++ +E + L + +N Sbjct: 117 SLCSRILRDNPVETQLDPEFTILEDFEAQDFFKETLQQFLRKNIKEN 163 >gi|116618575|ref|YP_818946.1| DNA helicase/exodeoxyribonuclease V, subunit A [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271225|sp|Q03W49|ADDA_LEUMM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116097422|gb|ABJ62573.1| DNA helicase/exodeoxyribonuclease V, subunit A [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 1230 Score = 48.1 bits (113), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 20/166 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK++Q + + V+A+AGSGKT +L++R+++ +L+ L +T T AAA EM Sbjct: 6 TKNQQRAIEEKGHNILVAASAGSGKTTVLIERLIQKILSGVSVEKFLIVTFTNAAAKEMR 65 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R LE+ K+ +D S+ R L +L P + TI A+ Sbjct: 66 ER-LEVAIE------------------KRLKVADESQKRFLQEQLLILPAA-NISTIDAY 105 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 I++ + + F + + +KL+++ + + + D N Sbjct: 106 ALRIIEMYYHIIGLDPQFRLLSDTAERKLLQQDVLTDVLADFYDEN 151 >gi|313891437|ref|ZP_07825053.1| ATP-dependent nuclease subunit A [Dialister microaerophilus UPII 345-E] gi|313120212|gb|EFR43388.1| ATP-dependent nuclease subunit A [Dialister microaerophilus UPII 345-E] Length = 1283 Score = 48.1 bits (113), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 3/50 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV 82 +SA AGSGKT +LV+R++R + P + LL LT TKAAA+EM RV Sbjct: 23 LSAAAGSGKTAVLVERIIRRITDLDDPTDVTDLLVLTFTKAAASEMKSRV 72 >gi|309778890|ref|ZP_07673660.1| ATP-dependent DNA helicase, UvrD/REP family [Ralstonia sp. 5_7_47FAA] gi|308922237|gb|EFP67864.1| ATP-dependent DNA helicase, UvrD/REP family [Ralstonia sp. 5_7_47FAA] Length = 716 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 20/134 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKTH L RV L+ A P +L LT ++ AA+E+S+R ++ Sbjct: 48 VLAGAGSGKTHTLGWRVAHLVANGADPQRILLLTFSRRAASELSNRAGHLLA-------- 99 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +QG++ N + ++ A T L G T H +++++ + Sbjct: 100 ------RAMQGERSNNA-LNSAGTSYKTTLPWAG-----TFHGIGARLLREYAERVGLAP 147 Query: 156 HFAIADEEQSKKLI 169 F I D S L+ Sbjct: 148 DFTIHDRSDSADLL 161 >gi|297616711|ref|YP_003701870.1| recombination helicase AddA [Syntrophothermus lipocalidus DSM 12680] gi|297144548|gb|ADI01305.1| recombination helicase AddA [Syntrophothermus lipocalidus DSM 12680] Length = 1250 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 25/130 (19%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 VSA AG+GKT +LV R++ L +P + LL +T+T AAAAEM R+ Sbjct: 23 VSAAAGTGKTAVLVGRIMGHLKDPVNPIDINRLLVVTYTNAAAAEMRERI---------- 72 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 L++EI++ N M R +++ + T+H+FC ++++ Sbjct: 73 -RAELASEISR------NPESMHLRRQMILL-----NDACIATMHSFCLDVVREHFYMVG 120 Query: 153 ITSHFAIADE 162 + F +ADE Sbjct: 121 LDPAFRLADE 130 >gi|187926312|ref|YP_001892657.1| UvrD/REP helicase [Ralstonia pickettii 12J] gi|241665800|ref|YP_002984159.1| UvrD/REP helicase [Ralstonia pickettii 12D] gi|187728066|gb|ACD29230.1| UvrD/REP helicase [Ralstonia pickettii 12J] gi|240867827|gb|ACS65487.1| UvrD/REP helicase [Ralstonia pickettii 12D] Length = 716 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 20/134 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKTH L RV L+ A P +L LT ++ AA+E+S+R ++ Sbjct: 48 VLAGAGSGKTHTLGWRVAHLVANGADPQRILLLTFSRRAASELSNRAGHLLA-------- 99 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +QG++ N + ++ A T L G T H +++++ + Sbjct: 100 ------RAMQGERSNNA-LNSAGTSYKTTLPWAG-----TFHGIGARLLREYAERVGLAP 147 Query: 156 HFAIADEEQSKKLI 169 F I D S L+ Sbjct: 148 DFTIHDRSDSADLL 161 >gi|299140513|ref|ZP_07033651.1| UvrD/REP helicase domain-containing protein [Prevotella oris C735] gi|298577479|gb|EFI49347.1| UvrD/REP helicase domain-containing protein [Prevotella oris C735] Length = 1075 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 8/148 (5%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95 A+AGSGKT L + ++LL+ N H L +T T A EM R+L + S L + Sbjct: 9 ASAGSGKTFTLAVQYIKLLVENPHAYRHTLAVTFTNKATEEMKMRILSQLYGISRGLKES 68 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 E K Q + ++ A + L ++ +V+TI AF + +++ E +T+ Sbjct: 69 KPYLESVKQQTSLDETTIINNASYALSELIHNYSYFRVETIDAFFQTVLRNLARELELTA 128 Query: 156 HFAI------ADEEQSKKLIEEAKKSTL 177 + I +++ +LIE+ S+L Sbjct: 129 NLRIELNDQQVEQQAVDQLIEDLNDSSL 156 >gi|282890111|ref|ZP_06298642.1| hypothetical protein pah_c013o010 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499962|gb|EFB42250.1| hypothetical protein pah_c013o010 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 721 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 32/50 (64%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT ++ QR+ L+ PS +L +T T AA+EM +RV E+ Sbjct: 21 VLAGAGSGKTRVVTQRIAHLIDEGIPPSQILAVTFTNKAASEMQNRVKEL 70 >gi|260773436|ref|ZP_05882352.1| exodeoxyribonuclease V beta chain [Vibrio metschnikovii CIP 69.14] gi|260612575|gb|EEX37778.1| exodeoxyribonuclease V beta chain [Vibrio metschnikovii CIP 69.14] Length = 1204 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 16/144 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-----HPSTL-----LCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT + LRLLL + HP+ L L +T T+AA AE+ R+ + Sbjct: 25 IEASAGTGKTFTIAALYLRLLLGHGNADTRHPTPLTVDQILVVTFTEAATAELRDRIRQR 84 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 I + ++ S++ IQG + +D +L+ V TIH FC+ ++ Sbjct: 85 IHQ-ARIAFLRGSSDDPVIQGLLADYADRPGVAKVLLQAERQMDEAAVYTIHGFCQRMLT 143 Query: 146 QFPLEANITSHFA---IADEEQSK 166 Q E+ S F+ + DE Q K Sbjct: 144 QNAFESG--SRFSNEFVTDESQLK 165 >gi|307565674|ref|ZP_07628146.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A] gi|307345619|gb|EFN90984.1| UvrD/REP helicase [Prevotella amnii CRIS 21A-A] Length = 892 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 58/148 (39%), Gaps = 40/148 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A G GKTHIL +RV +LCLT T AA EM+ R+ I Sbjct: 22 VLAPPGCGKTHILAERVRYAFSKGIAFEDMLCLTFTNRAAREMTSRIKNIF--------- 72 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 PNK D+S L+V +H FC + ++ + S Sbjct: 73 -------------PNK-DIS--------------TLQVGNVHHFCSKFLFEY---KKVPS 101 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLD 183 +I DEE++ +I E K I+ D Sbjct: 102 DSSIIDEEEAVSIIAEYKNEDDQGIIGD 129 >gi|302342252|ref|YP_003806781.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075] gi|301638865|gb|ADK84187.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075] Length = 741 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 43/152 (28%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 +Q ++ +LL R V A AGSGKT LV RV ++ P +L LT T+ AAAE Sbjct: 15 AQRQAVELLG----RPVLVIAGAGSGKTRTLVHRVAHVVELGVDPREILLLTFTRRAAAE 70 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M +++AR L GG T H Sbjct: 71 M-----------------------------------LARARQLNPACAAVGGG----TFH 91 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + C +++++ A + +F I D ++ L+ Sbjct: 92 SLCNRLLRRYAARAGLMPNFTIIDPADAEHLV 123 >gi|319442768|ref|ZP_07991924.1| putative ATP-dependent DNA helicase II [Corynebacterium variabile DSM 44702] Length = 931 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 21/127 (16%) Query: 21 KSEQLLAS-DPTRSAWVS---------ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 + E+LLA +P + A V A AGSGKT +L +RV LL P +L +T Sbjct: 108 REEELLAGLNPAQRAAVVHHGSPLLIVAGAGSGKTSVLTRRVAWLLAHGVAPWQILAITF 167 Query: 71 TKAAAAEMSHRVLEII---------TAWSHLSDEILSAEITKIQGKKPNKS--DMSKARH 119 T AAAEM RV +++ + + L IL A I+G N + D + Sbjct: 168 TNKAAAEMRERVTDLVGPVAERMWLSTFHSLCVRILRANAQLIEGLNTNFTIYDSDDQKR 227 Query: 120 LLITILE 126 L+ +L+ Sbjct: 228 LITMVLK 234 >gi|170782260|ref|YP_001710593.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp. sepedonicus] gi|169156829|emb|CAQ01996.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp. sepedonicus] Length = 1086 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST- 64 S Q +ET+ L S T+ ++ + P V A AGSGKT + RV+ LLAN H Sbjct: 16 SAQRIAETLGLPSPTEQQRRVIESPLEPGLVVAGAGSGKTETMASRVV-WLLANGHVGVE 74 Query: 65 -LLCLTHTKAAAAEMSHRV 82 +L LT T+ AA E+ R+ Sbjct: 75 EILGLTFTRKAAGELGVRI 93 >gi|146284345|ref|YP_001174498.1| exodeoxyribonuclease V, beta subunit [Pseudomonas stutzeri A1501] gi|145572550|gb|ABP81656.1| exodeoxyribonuclease V, beta subunit [Pseudomonas stutzeri A1501] Length = 1182 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 9/159 (5%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVL 83 LL S + + A+AG+GKT L RLLL +L +T+T AA AE+ R+ Sbjct: 5 LLDSPFDGRSLIEASAGTGKTWTLTALYARLLLERQLSVGQILVVTYTTAATAELRERIR 64 Query: 84 EIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + + D S++ + ++ + P+ D S+ R LL + + TIH FC+ Sbjct: 65 ARLADLLAVYDGTPSSDDFLNRLHARYPD--DASRRRLLL--AVHGFDEAAIFTIHGFCQ 120 Query: 142 AIMQQFPLEA--NITSHFAIADEEQSKKLIEEAKKSTLA 178 +Q EA + S D E L+ +A +S LA Sbjct: 121 RALQDAAFEAGGDFDSELTADDREIIDALLADAWRSELA 159 >gi|332034801|gb|EGI71338.1| ATP-dependent DNA helicase UvrD/PcrA [Pseudoalteromonas haloplanktis ANT/505] Length = 721 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 45/193 (23%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D ++ + + + A P ++ V A AGSGKT +LV R+ L+ + A ++ +T Sbjct: 4 SQLLDGLNDKQRDAVAA--PLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASAYSIFAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV +E L A + G Sbjct: 62 FTNKAAKEMRSRV-----------EETLKAPV---------------------------G 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ + T H I++ EAN+ F I D + ++I K L S+ +D+ + Sbjct: 84 GMWIGTFHGLSHRILRAHHREANLPEAFQILDSDDQLRMI----KRLLKSMNIDDKKWPA 139 Query: 190 KAFYEILEISNDE 202 K F + DE Sbjct: 140 KQFGWYISAKKDE 152 >gi|328947535|ref|YP_004364872.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489] gi|328447859|gb|AEB13575.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489] Length = 1265 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 18/124 (14%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTKAAAAEMSHR 81 Q+ A +A VSA AGSGKT +L R LL+ N H +L LT TK AA+E+ R Sbjct: 26 QIKAITKKDNAVVSAGAGSGKTDVLALRYAFLLMTDENIHIKNILALTFTKEAASEIYDR 85 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + + + ++ D K P + ++K L+ K+QT+ A+ Sbjct: 86 IYKKLNSFVKFLD----------NDKYPKQVKLAK------RALDEFADAKIQTLDAYSG 129 Query: 142 AIMQ 145 ++++ Sbjct: 130 SLVR 133 >gi|300727037|ref|ZP_07060456.1| ATP-dependent DNA helicase PcrA [Prevotella bryantii B14] gi|299775581|gb|EFI72172.1| ATP-dependent DNA helicase PcrA [Prevotella bryantii B14] Length = 784 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 14/128 (10%) Query: 12 ETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 E +L+SQ Q A + A V A AGSGKT +L ++ LL+ P +L LT Sbjct: 2 EEKELLSQLNDSQRAAVEYLDGASLVIAGAGSGKTRVLTYKIAYLLMKGYEPWDILALTF 61 Query: 71 TKAAAAEMSHRVLEIITA----------WSHLSDEILSAEITKIQGKKPNKS--DMSKAR 118 T AA EM R+ ++ A + + IL E I G PN + D + +R Sbjct: 62 TNKAAKEMQSRIGSLVGADRARYLNMGTFHSIFARILRREAAHI-GYNPNFTIYDEADSR 120 Query: 119 HLLITILE 126 L+ TI++ Sbjct: 121 SLIKTIIK 128 >gi|169350949|ref|ZP_02867887.1| hypothetical protein CLOSPI_01726 [Clostridium spiroforme DSM 1552] gi|169292011|gb|EDS74144.1| hypothetical protein CLOSPI_01726 [Clostridium spiroforme DSM 1552] Length = 714 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 39/135 (28%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT ++ R+ L+ P +L +T T AA EM RV++++ Sbjct: 26 AGAGSGKTRVITYRIAYLIDEIGVDPRKILAITFTNKAANEMKERVVDLLGV-------- 77 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 H L G + TIH+ C I++Q N S+ Sbjct: 78 ----------------------HAL--------GSLICTIHSLCVRILRQHINVINYPSN 107 Query: 157 FAIADEEQSKKLIEE 171 F I DEE K LI++ Sbjct: 108 FTIMDEEDQKALIKK 122 >gi|149921796|ref|ZP_01910242.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1] gi|149817357|gb|EDM76831.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1] Length = 683 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 13/124 (10%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT-- 87 P V A AG+GKT L RV +L+ P ++ +T T AA EM HRV ++T Sbjct: 32 PAGKILVLAGAGTGKTRTLTYRVAKLVAGGCQPERIMLVTFTNRAAREMVHRVESLLTID 91 Query: 88 -------AWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIHA 138 + H+ + IL + G P+ D AR L+ +++ + G+ V T Sbjct: 92 MRRSASGTFHHVGNRILR-RYGEAVGLGPDFGILDPEDARDLMGSVV-SELGMAVLTSKR 149 Query: 139 FCEA 142 F +A Sbjct: 150 FPDA 153 >gi|311112208|ref|YP_003983430.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa ATCC 17931] gi|310943702|gb|ADP39996.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa ATCC 17931] Length = 957 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 41/157 (26%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 ID ++ + E +L S + A AGSGKT +L R+ LL A P +L +T T Sbjct: 115 IDGLNDRQREAVLHSG--SPLLIVAGAGSGKTRVLTHRIAHLLATGRATPGQILAITFTN 172 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ +I +A+H+ I+ Sbjct: 173 KAAAEMRERIQALIG---------------------------PRAQHMWIS--------- 196 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T H+FC ++++ + S F I D S++L+ Sbjct: 197 --TFHSFCVRVLRREAKALGLKSTFTIYDSADSQRLL 231 >gi|288947725|ref|YP_003445108.1| ATP-dependent DNA helicase, RecQ family [Allochromatium vinosum DSM 180] gi|288898241|gb|ADC64076.1| ATP-dependent DNA helicase, RecQ family [Allochromatium vinosum DSM 180] Length = 1715 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 7/85 (8%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 + ++A+ P S V A GSGKT ++V RV LL AHP ++ L + ++A +E+ HR Sbjct: 1089 QAIVAAPPEGSLLVLAGPGSGKTRVIVHRVAWLLRQGMAHPQDIMVLAYNRSAVSEIRHR 1148 Query: 82 VLEIITAWSHLSDEILSAEITKIQG 106 + W+ + E + + + G Sbjct: 1149 L------WALVGPEAVGVSVQTVHG 1167 >gi|196231880|ref|ZP_03130736.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428] gi|196224002|gb|EDY18516.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428] Length = 666 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 62/158 (39%), Gaps = 39/158 (24%) Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID ++ +Q A + P A V A AGSGKT L RV LL P +L LT T Sbjct: 18 IDFAAELNPQQHEAVTAPPGPALVIAGAGSGKTRTLTFRVAYLLENGVLPQNILLLTFTN 77 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ PN D+S GL Sbjct: 78 KAAREMLDRVANLL----------------------PN--DIS--------------GLW 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H+ ++++ P A F+I D E + +++ Sbjct: 100 GGTFHSVGNRLLRRHPEAAGFAPGFSIMDREDQQDMLD 137 >gi|330444888|ref|ZP_08308543.1| DNA helicase II [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489198|dbj|GAA03040.1| DNA helicase II [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 723 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 41/157 (26%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ LL + A P +++ +T T Sbjct: 7 LDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLVHRIAWLLSVEQASPYSIMSVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E+ +QG + G+ Sbjct: 65 KAAAEMRGRINEL------------------MQG--------------------SSAGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T H C +++ L+A + F I D + +L+ Sbjct: 87 NGTFHGLCHRMLRAHYLDARLPEDFNILDSDDQMRLL 123 >gi|145641213|ref|ZP_01796793.1| DNA helicase II [Haemophilus influenzae R3021] gi|145274050|gb|EDK13916.1| DNA helicase II [Haemophilus influenzae 22.4-21] Length = 726 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 39/162 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 +E +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ +T Sbjct: 4 AELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK-ARHLLITILETP 128 T AAAEM HR+ +S ++K A+H L Sbjct: 62 FTNKAAAEMRHRI----------------------------QSTLAKHAQHQLF------ 87 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ + T H+ +++ L+ + F I D E ++LI+ Sbjct: 88 -GMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQRRLIK 128 >gi|86143639|ref|ZP_01062015.1| putative helicase [Leeuwenhoekiella blandensis MED217] gi|85829682|gb|EAQ48144.1| putative helicase [Leeuwenhoekiella blandensis MED217] Length = 1047 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 14/185 (7%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +A+AG+GKT LV+ L +L +++ +L +T T A AEM R+++ + +S S Sbjct: 11 NASAGAGKTFALVKNYLSILFKSSNDFKYRRILAITFTNKAVAEMKTRIIKNLQDFS--S 68 Query: 94 DEILSAEITKIQGKKP----NKSDM-SKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 D I + + + + +S++ +KA+ +L I++ V TI F I++ F Sbjct: 69 DAIFTQDNPMLSAVEEETGLERSEIQNKAKRILKHIVQDYASFDVVTIDNFTHRIIRTFA 128 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE--DIET 206 + I +F + E ++ ++E+A S + D N Y + +I ND+ DI Sbjct: 129 YDLKIPQNFEV--ELNTQDVLEQAVDSLIDKAGKDQNITRVLLDYALEKIDNDKSWDISR 186 Query: 207 LISDI 211 DI Sbjct: 187 DFYDI 191 >gi|255020260|ref|ZP_05292329.1| ATP-dependent DNA helicase UvrD/PcrA [Acidithiobacillus caldus ATCC 51756] gi|254970402|gb|EET27895.1| ATP-dependent DNA helicase UvrD/PcrA [Acidithiobacillus caldus ATCC 51756] Length = 729 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 3/76 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 SE I L Q + LL P A V A AGSGKT +L+ R+ LL P+ +L +T Sbjct: 16 SEWIQLNDQQREAVLLPPGP---ALVLAGAGSGKTRVLISRIAHLLEEGVRPAEILAVTF 72 Query: 71 TKAAAAEMSHRVLEII 86 T AA M R+ ++ Sbjct: 73 TNKAARSMRERLAALV 88 >gi|283457344|ref|YP_003361920.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18] gi|283133335|dbj|BAI64100.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18] Length = 985 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL + A P +L +T T AAAEM R+ ++ Sbjct: 160 IVAGAGSGKTRVLTHRIAYLLATHRATPGQILAITFTNKAAAEMRERIEALVG------- 212 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +A+H+ I+ T H+FC ++++ + Sbjct: 213 --------------------PRAKHMWIS-----------TFHSFCVRVLRREAAALGLK 241 Query: 155 SHFAIADEEQSKKLI 169 S F I D S++L+ Sbjct: 242 STFTIYDSTDSQRLL 256 >gi|260582117|ref|ZP_05849911.1| DNA helicase II [Haemophilus influenzae NT127] gi|260094749|gb|EEW78643.1| DNA helicase II [Haemophilus influenzae NT127] Length = 727 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 39/162 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 +E +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ +T Sbjct: 5 AELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK-ARHLLITILETP 128 T AAAEM HR+ +S ++K A+H L Sbjct: 63 FTNKAAAEMRHRI----------------------------QSTLAKHAQHQLF------ 88 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 G+ + T H+ +++ L+ + F I D E ++LI+ Sbjct: 89 -GMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQRRLIK 129 >gi|327482729|gb|AEA86039.1| exodeoxyribonuclease V, beta subunit [Pseudomonas stutzeri DSM 4166] Length = 1182 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 9/159 (5%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVL 83 LL S + + A+AG+GKT L RLLL +L +T+T AA AE+ R+ Sbjct: 5 LLDSPFDGRSLIEASAGTGKTWTLTALYARLLLERQLSVGQILVVTYTTAATAELRERIR 64 Query: 84 EIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + + D S++ + ++ + P+ D S+ R LL + + TIH FC+ Sbjct: 65 ARLADLLAVYDGTPSSDDFLNRLHARYPD--DASRRRLLL--AVHGFDEAAIFTIHGFCQ 120 Query: 142 AIMQQFPLEA--NITSHFAIADEEQSKKLIEEAKKSTLA 178 +Q EA + S D E L+ +A +S LA Sbjct: 121 RALQDAAFEAGGDFDSELTADDREIIDALLADAWRSELA 159 >gi|145596260|ref|YP_001160557.1| UvrD/REP helicase [Salinispora tropica CNB-440] gi|145305597|gb|ABP56179.1| UvrD/REP helicase [Salinispora tropica CNB-440] Length = 1144 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 3/76 (3%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLL 66 E ++ + L + T+ + + + P V A AGSGKT + RV+ L+AN++ P +L Sbjct: 27 ELAKLLRLPAPTREQAAIIAAPVEPLLVVAGAGSGKTETMAARVV-WLVANSYVQPEQVL 85 Query: 67 CLTHTKAAAAEMSHRV 82 LT T+ AA E++HRV Sbjct: 86 GLTFTRKAAGELAHRV 101 >gi|290958050|ref|YP_003489232.1| ATP-dependent DNA helicase II [Streptomyces scabiei 87.22] gi|260647576|emb|CBG70681.1| putative ATP-dependent DNA helicase II [Streptomyces scabiei 87.22] Length = 836 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL HP +L +T T AA EM RV +++ Sbjct: 90 IVAGAGSGKTRVLTHRIAHLLGERRVHPGQILAITFTNKAAGEMKERVEQLV-------- 141 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + N + V T H+ C I+++ + T Sbjct: 142 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKKLGFT 171 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 172 SSFSIYDAADSKRLM 186 >gi|257066035|ref|YP_003152291.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548] gi|256797915|gb|ACV28570.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548] Length = 1121 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 23/129 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA AGSGKT +LV R++RLL+ + + + +T T A+ EM R+ + L + Sbjct: 23 VSAAAGSGKTSVLVTRIIRLLIEDRKDIGSFIIVTFTNKASVEMKDRI------RTALEE 76 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-FPLEANI 153 E+ K SD+ + L + +++T+H+FC ++++ F ++ Sbjct: 77 EL-----------KKKGSDLKFIKDQLKNLKHA----QIKTLHSFCADMLRENFYYFDDL 121 Query: 154 TSHFAIADE 162 + +F + E Sbjct: 122 SPNFKVISE 130 >gi|320450685|ref|YP_004202781.1| ATP-dependent DNA helicase PcrA [Thermus scotoductus SA-01] gi|320150854|gb|ADW22232.1| ATP-dependent DNA helicase PcrA [Thermus scotoductus SA-01] Length = 621 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 ++ +A+ T A V A GSGKT +V R+ RL+ P T+ +T TK AA EM R+ Sbjct: 6 QEAVANHFTGPALVIAGPGSGKTRTVVHRIARLIRKGVDPETVTAVTFTKKAAGEMRERL 65 Query: 83 LEII 86 + ++ Sbjct: 66 VHLV 69 >gi|300856480|ref|YP_003781464.1| putative ATP-dependent exonuclease [Clostridium ljungdahlii DSM 13528] gi|300436595|gb|ADK16362.1| predicted ATP-dependent exonuclease [Clostridium ljungdahlii DSM 13528] Length = 1240 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 70/146 (47%), Gaps = 27/146 (18%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAA 76 T+S++ P + VSA AG+GKT +LV+R+++ + + + LL +T T AAA+ Sbjct: 14 TESQREAIFTPKCNLLVSAGAGTGKTAVLVERIIQEITSIDEDVDIDKLLVVTFTNAAAS 73 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ E I+ ++L + SK +T+L + TI Sbjct: 74 EMKERIAEAIS-------KLLESNYG------------SKNLQKQLTLLNQAN---IITI 111 Query: 137 HAFC-EAIMQQFPLEANITSHFAIAD 161 HAFC + I F L ++ +F I D Sbjct: 112 HAFCLKVIKSNFHL-IDLDPNFRICD 136 >gi|170099549|ref|XP_001880993.1| predicted protein [Laccaria bicolor S238N-H82] gi|164644518|gb|EDR08768.1| predicted protein [Laccaria bicolor S238N-H82] Length = 1055 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 38/148 (25%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLC-LTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A GSGKT +L R+ L+L + P +C +T T AA EM R Sbjct: 48 AGPGSGKTKVLTSRIAHLILNHHLPPFSICAVTFTNKAANEMRER--------------- 92 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 +TK+ GK E L++ T HA C ++++ + + Sbjct: 93 ----LTKLIGK------------------ERTSQLRMGTFHALCARFLRKYAHLVKLAEN 130 Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDN 184 F + D E+SKK+I+ K A + +N Sbjct: 131 FTVCDAEESKKIIQALLKPYTAYLASEN 158 >gi|269122166|ref|YP_003310343.1| UvrD/REP helicase [Sebaldella termitidis ATCC 33386] gi|268616044|gb|ACZ10412.1| UvrD/REP helicase [Sebaldella termitidis ATCC 33386] Length = 995 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 14/191 (7%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSHL 92 + A+AG+GKT+ L ++ L+ + +T TK A +E+ RV LE I+ + Sbjct: 5 IKASAGTGKTYSLALEYIKELILGTDFRKIYVMTFTKKATSEIRERVLLFLEEISEGTEA 64 Query: 93 SDEILSAEITKIQGKKPNKS-DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 DEIL I+ P + + K + + I+ +K+ TI +F + I + E Sbjct: 65 GDEILE----NIRKSDPGLTVNQEKMKIIYKDIIYNKDKIKIYTIDSFIKIIFDRIVAEK 120 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELKKAFYEILEISNDEDIETLISD 210 + D +++K++IE + LA ++ + + E K+F N E+ E LI Sbjct: 121 KHIYTYN-TDNDENKEVIE----NVLAELISNRYHMEKVKSFLLKERRRNLEEYEELIDQ 175 Query: 211 IISNRTALKLI 221 +I NR + I Sbjct: 176 LIKNRWKFEFI 186 >gi|228474316|ref|ZP_04059051.1| recombination helicase AddA [Staphylococcus hominis SK119] gi|228271675|gb|EEK13022.1| recombination helicase AddA [Staphylococcus hominis SK119] Length = 1221 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 48/199 (24%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV + I S L D Sbjct: 30 VAAAAGSGKTAVLVERIIQKILKDEVDVDKLLVVTFTNLSAREMKHRVEQRIQQAS-LED 88 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P + R I I + ++ T+H+FC ++QQ Sbjct: 89 --------------PKNEHLKSQR---IKIHQA----QISTLHSFCLKVIQQ-------- 119 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE--TLISDII 212 H+ + + + + I E + L +D E+ + YE D DIE TL+ + Sbjct: 120 -HYDVIQLDPNFRTISEVENVLLLEQSID---EVLEHHYE------DPDIEFLTLVEQLS 169 Query: 213 SNRTALKL-----IFFFFS 226 ++R + F++FS Sbjct: 170 NDRNDDRFREILKRFYYFS 188 >gi|255692788|ref|ZP_05416463.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain protein [Bacteroides finegoldii DSM 17565] gi|260621505|gb|EEX44376.1| ATP-dependent DNA helicase, RecQ family/ UvrD/REP helicase domain protein [Bacteroides finegoldii DSM 17565] Length = 1624 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 2/86 (2%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLL 66 Q++ + +S+ + E +++ +R V+A GSGKT +LV ++ LLL + LL Sbjct: 1064 QKYKQLFGQLSKRQME-IISDKDSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLL 1122 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHL 92 LT ++AAA E R++E+I +H Sbjct: 1123 MLTFSRAAATEFKQRLMELIGNAAHF 1148 >gi|225620088|ref|YP_002721345.1| ATP-dependent DNA helicase [Brachyspira hyodysenteriae WA1] gi|225214907|gb|ACN83641.1| ATP-dependent DNA helicase [Brachyspira hyodysenteriae WA1] Length = 665 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 38/132 (28%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A AGSGKT ++ +R+ L+ PS +L +T T AAAEM R Sbjct: 24 AGAGSGKTRVITERIAYLIKHGVLPSQILAVTFTNKAAAEMRER---------------- 67 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157 ITK+ +KP + L V T H+FC +++ + ++F Sbjct: 68 ---ITKLLKEKPKQ-------------------LVVSTFHSFCVRVLKGDIEKLGYKNNF 105 Query: 158 AIADEEQSKKLI 169 +I S+ LI Sbjct: 106 SIYSSSDSRTLI 117 >gi|313847563|emb|CBY16551.1| putative UvrD/REP helicase [Chlamydophila psittaci RD1] gi|325507206|gb|ADZ18844.1| exodeoxyribonuclease V subunit beta [Chlamydophila psittaci 6BC] gi|328914196|gb|AEB55029.1| exodeoxyribonuclease V, beta subunit [Chlamydophila psittaci 6BC] Length = 1045 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 11/121 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLE-IITAWSH 91 ++ A+AG+GKT + Q VLR LL +H +L +T T AA E+ R+ E + A S Sbjct: 18 FLEASAGTGKTFTIEQIVLRALLEGSVSHVENILVVTFTNAATNELKLRIQENLKQAASQ 77 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITI---LETPGGLKVQTIHAFCEAIMQQ-F 147 L I + E P S + L + + L + + + TIH FC ++QQ F Sbjct: 78 LKSAITNPE----HPLPPYLSPPCDVKQLYMQVRNALASIDRMAIFTIHGFCNYVLQQHF 133 Query: 148 P 148 P Sbjct: 134 P 134 >gi|309389723|gb|ADO77603.1| UvrD/REP helicase [Halanaerobium praevalens DSM 2228] Length = 1051 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 76/146 (52%), Gaps = 8/146 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA---WSHL 92 + A+AG+GKT+ L L LL S ++ +T TK A AE+ +R+L+ + A S Sbjct: 5 IKASAGTGKTYRLSLEYLAALLKGIDFSEIIVMTFTKKATAEIKNRILKHLRALILGSPE 64 Query: 93 SDEILSAEITKIQGKKPN-KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 ++I++A + +IQ P K ++ + + ++ +K+ TI AF I + Sbjct: 65 KEDIIAA-LAEIQ---PELKVEVEQLEKIYKKMILNDEDIKIYTIDAFINQIFSRGIAPF 120 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTL 177 ++ I D++Q++K+IEE K L Sbjct: 121 LEIYNYQIIDQKQNEKIIEELLKKIL 146 >gi|227507848|ref|ZP_03937897.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192686|gb|EEI72753.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 1254 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 23/191 (12%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHR 81 ++ + P + VSA+AGSGKT +LV R++ ++ + LL +T T AAA EM R Sbjct: 8 QRAIKDRPDGNVLVSASAGSGKTRVLVDRIIDMVKNQGINIDQLLVVTFTNAAAKEMRER 67 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + +Q + +D +HLL I + + T+ A+C+ Sbjct: 68 LR------------------GSLQSEFSKATDPESKKHLLTQIRKVAVA-DITTMDAYCQ 108 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISN 200 ++ ++ I +F + + +L++E + + +E+ F ++ E SN Sbjct: 109 KLVSRYYYILGIDPNFRVLSDNTEIQLLKEQVWDNVREALYGQDED--HTFADLTENFSN 166 Query: 201 DEDIETLISDI 211 D E L + I Sbjct: 167 DRSDEGLTNVI 177 >gi|218780684|ref|YP_002432002.1| UvrD/REP helicase [Desulfatibacillum alkenivorans AK-01] gi|218762068|gb|ACL04534.1| UvrD/REP helicase [Desulfatibacillum alkenivorans AK-01] Length = 638 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 38/139 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT L RV RL+ + A P+ +L LT T+ A+ EM R + Sbjct: 28 VIAGAGSGKTRTLTYRVARLVDSGAPPARILLLTFTRKASEEMLRR-----------AGV 76 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +L + + G T H+F +++++ + Sbjct: 77 LLGMDCDDVAGG---------------------------TFHSFSHQMLRRYAFKLGFDP 109 Query: 156 HFAIADEEQSKKLIEEAKK 174 F I D + LI+ KK Sbjct: 110 GFVILDRPDCEALIDRLKK 128 >gi|260171310|ref|ZP_05757722.1| hypothetical protein BacD2_05540 [Bacteroides sp. D2] gi|315919621|ref|ZP_07915861.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693496|gb|EFS30331.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1624 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 2/86 (2%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLL 66 Q++ + +S+ + E +++ +R V+A GSGKT +LV ++ LLL + LL Sbjct: 1064 QKYKQLFGQLSKRQME-IISDKDSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLL 1122 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHL 92 LT ++AAA E R++E+I +H Sbjct: 1123 MLTFSRAAATEFKQRLMELIGNAAHF 1148 >gi|227523105|ref|ZP_03953154.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus hilgardii ATCC 8290] gi|227089709|gb|EEI25021.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus hilgardii ATCC 8290] Length = 1254 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 23/191 (12%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHR 81 ++ + P + VSA+AGSGKT +LV R++ ++ + LL +T T AAA EM R Sbjct: 8 QRAIKDRPDGNVLVSASAGSGKTRVLVDRIIDMVKNQGINIDQLLVVTFTNAAAKEMRER 67 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + +Q + +D +HLL I + + T+ A+C+ Sbjct: 68 LR------------------GSLQSEFSKATDPESKKHLLTQIRKVAVA-DITTMDAYCQ 108 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISN 200 ++ ++ I +F + + +L++E + + +E+ F ++ E SN Sbjct: 109 KLVSRYYYILGIDPNFRVLSDNTEIQLLKEQVWDNVREALYGQDED--HTFADLTENFSN 166 Query: 201 DEDIETLISDI 211 D E L + I Sbjct: 167 DRSDEGLTNVI 177 >gi|87309169|ref|ZP_01091306.1| probable helicase [Blastopirellula marina DSM 3645] gi|87288160|gb|EAQ80057.1| probable helicase [Blastopirellula marina DSM 3645] Length = 1040 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 8/158 (5%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 P + + A+AGSGKT L R L +L + P+ +L T T+ AA E+ R++ + Sbjct: 3 PFQHRLIRASAGSGKTFQLSNRFLGVLASGDAPAEILATTFTRKAAGEILDRIMIRLAEA 62 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + +++ AE+ P A L + + L+VQT+ +F + Q F Sbjct: 63 ARDPNKL--AELNSFIEAAPVTPAACVAT--LRELTQQLHRLRVQTLDSFFIQVAQCFSF 118 Query: 150 EANITSHFAIADEEQSKKL----IEEAKKSTLASIMLD 183 E ++IADE +L IEE + A+++L+ Sbjct: 119 EMGFPPGWSIADEVDDSELRINAIEELLRENEAALVLE 156 >gi|33152201|ref|NP_873554.1| exodeoxyribonuclease V, beta subunit [Haemophilus ducreyi 35000HP] gi|33148423|gb|AAP95943.1| exodeoxyribonuclease V, beta subunit [Haemophilus ducreyi 35000HP] Length = 1198 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 15/130 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSH 91 + A+AG+GKT + LRLLL P T +L +T TKAA E+ R+ I A Sbjct: 17 IEASAGTGKTFTMANLYLRLLLGIGCQPLTVEEILVVTFTKAATEELRDRIRRNIKACRE 76 Query: 92 LSDEILSAEITKIQGKKPN-------KSDMSKARHLLITILETPGGL-KVQTIHAFCEAI 143 + +I K N + D L + I E L + TIH+FC+ I Sbjct: 77 F---FCDYDPNQIDQNKDNFYSQLYERVDNLDEAKLRLRIAEREIDLASIFTIHSFCQKI 133 Query: 144 MQQFPLEANI 153 + QF ++ I Sbjct: 134 LSQFAFDSGI 143 >gi|167762567|ref|ZP_02434694.1| hypothetical protein BACSTE_00923 [Bacteroides stercoris ATCC 43183] gi|167699673|gb|EDS16252.1| hypothetical protein BACSTE_00923 [Bacteroides stercoris ATCC 43183] Length = 1602 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 2/86 (2%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLL 66 Q++ + +S+ + E +++ +R V+A GSGKT +LV ++ LLL + LL Sbjct: 1042 QKYKQLFGQLSKRQME-IISDKESRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLL 1100 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHL 92 LT ++AAA E R++E+I +H Sbjct: 1101 MLTFSRAAATEFKQRLMELIGNATHF 1126 >gi|302771199|ref|XP_002969018.1| hypothetical protein SELMODRAFT_409804 [Selaginella moellendorffii] gi|300163523|gb|EFJ30134.1| hypothetical protein SELMODRAFT_409804 [Selaginella moellendorffii] Length = 1196 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 57/144 (39%), Gaps = 37/144 (25%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A GSGKT +V R+L LL +L +T T AAA EM RV ++ Sbjct: 281 IVAGPGSGKTSTMVARILTLLNEGVDSKNILGMTFTTAAATEMMDRVAAVV--------- 331 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 GK+ +K L + T H+FC + + + N TS Sbjct: 332 ----------GKEASKE------------------LMISTFHSFCLQLCRSHAEKLNRTS 363 Query: 156 HFAIADEEQSKKLIEEAKKSTLAS 179 F + Q +K + EA + L + Sbjct: 364 EFLVYGASQQRKAVIEATRLALEA 387 >gi|227510906|ref|ZP_03940955.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus buchneri ATCC 11577] gi|227085858|gb|EEI21170.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus buchneri ATCC 11577] Length = 1254 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 23/191 (12%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHR 81 ++ + P + VSA+AGSGKT +LV R++ ++ + LL +T T AAA EM R Sbjct: 8 QRAIKDRPDGNVLVSASAGSGKTRVLVDRIIDMVKNQGINIDQLLVVTFTNAAAKEMRER 67 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + +Q + +D +HLL I + + T+ A+C+ Sbjct: 68 LR------------------GSLQSEFSKATDPESKKHLLTQIRKVAVA-DITTMDAYCQ 108 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISN 200 ++ ++ I +F + + +L++E + + +E+ F ++ E SN Sbjct: 109 KLVSRYYYILGIDPNFRVLSDNTEIQLLKEQVWDNVREALYGQDED--HTFADLTENFSN 166 Query: 201 DEDIETLISDI 211 D E L + I Sbjct: 167 DRSDEGLTNVI 177 >gi|314936814|ref|ZP_07844161.1| ATP-dependent nuclease subunit A [Staphylococcus hominis subsp. hominis C80] gi|313655433|gb|EFS19178.1| ATP-dependent nuclease subunit A [Staphylococcus hominis subsp. hominis C80] Length = 1224 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 48/199 (24%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R+++ +L + LL +T T +A EM HRV + I S L D Sbjct: 33 VAAAAGSGKTAVLVERIIQKILKDEVDVDKLLVVTFTNLSAREMKHRVEQRIQQAS-LED 91 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P + R I I + ++ T+H+FC ++QQ Sbjct: 92 --------------PKNEHLKSQR---IKIHQA----QISTLHSFCLKVIQQ-------- 122 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE--TLISDII 212 H+ + + + + I E + L +D E+ + YE D DIE TL+ + Sbjct: 123 -HYDVIQLDPNFRTISEVENVLLLEQSID---EVLEHHYE------DPDIEFLTLVEQLS 172 Query: 213 SNRTALKL-----IFFFFS 226 ++R + F++FS Sbjct: 173 NDRNDDRFREILKRFYYFS 191 >gi|119717815|ref|YP_924780.1| ATP-dependent DNA helicase PcrA [Nocardioides sp. JS614] gi|119538476|gb|ABL83093.1| ATP-dependent DNA helicase PcrA [Nocardioides sp. JS614] Length = 797 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 11/75 (14%) Query: 23 EQLLA--SDPTRSA--------WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 E+LL ++P R+A V A AGSGKT +L +R+ L+ AHP ++L +T T Sbjct: 20 EELLEGLNEPQRAAVVHEGAPLLVVAGAGSGKTRVLTRRIAWLISERKAHPGSILAITFT 79 Query: 72 KAAAAEMSHRVLEII 86 AAAEM RV +++ Sbjct: 80 NKAAAEMKERVEDLV 94 >gi|187924915|ref|YP_001896557.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN] gi|187716109|gb|ACD17333.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN] Length = 720 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 6/77 (7%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 E +D + T + P + V A AGSGKT+ L RV L++ A P +L LT + Sbjct: 37 EAVDYGADTPTA------PPGALLVIAGAGSGKTNTLAHRVANLVVKGADPRRILLLTFS 90 Query: 72 KAAAAEMSHRVLEIITA 88 + AA EM+ RV I A Sbjct: 91 RRAALEMTRRVTRIAGA 107 >gi|315637850|ref|ZP_07893040.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter upsaliensis JV21] gi|315482091|gb|EFU72705.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter upsaliensis JV21] Length = 909 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 17/128 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + L+L A +L +T TK A EM RV+E + E Sbjct: 10 LEASAGSGKTFALSMRFVALILNGAKIDEILAITFTKKATNEMKKRVIENFLTFDKKEAE 69 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETP------GGLKVQTIHAFCEAIMQQFPL 149 + E+ K+ ++K + LI + + LK+ T A I++ F L Sbjct: 70 --TKELCKL---------LAKDKEELIRLRDAKKEEFLRKNLKIYTFDALFSQILRSFAL 118 Query: 150 EANITSHF 157 + S F Sbjct: 119 NLGLMSDF 126 >gi|296127315|ref|YP_003634567.1| UvrD/REP helicase [Brachyspira murdochii DSM 12563] gi|296019131|gb|ADG72368.1| UvrD/REP helicase [Brachyspira murdochii DSM 12563] Length = 666 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 38/132 (28%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A AGSGKT ++ +R+ L+ PS +L +T T AA+EM R Sbjct: 24 AGAGSGKTRVITERIAYLIKHGVLPSQILAVTFTNKAASEMRER---------------- 67 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157 ITK+ +KP + L V T H+FC +++ + S+F Sbjct: 68 ---ITKLLKEKPKQ-------------------LVVSTFHSFCVRVLKGDIEKLGYKSNF 105 Query: 158 AIADEEQSKKLI 169 +I S+ LI Sbjct: 106 SIYSSSDSRTLI 117 >gi|225019255|ref|ZP_03708447.1| hypothetical protein CLOSTMETH_03208 [Clostridium methylpentosum DSM 5476] gi|224947886|gb|EEG29095.1| hypothetical protein CLOSTMETH_03208 [Clostridium methylpentosum DSM 5476] Length = 1188 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 29/197 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 +SA+AGSGKT +L RV+ L + LL +T T+AAA EM R+ Sbjct: 37 LSASAGSGKTFVLSSRVVYKLAHRERETRADRLLVVTFTRAAAKEMRTRI---------- 86 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 +A++ ++ + P+ + + + + LL K+ TI +FC +++ Sbjct: 87 -----TAKLDELVARFPDDAKLQRQKLLL-------SRAKITTIDSFCADLVRDNFDRLG 134 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212 ++ F IADE + ++ +EA L + D + K F + + + +D L ++ Sbjct: 135 LSPDFRIADETELAQIQDEA----LDELFEDYYSQGDKEFAALSDSFSLKDDSRLKGIVL 190 Query: 213 SNRTALKLIFFFFSYLW 229 S + ++ F +LW Sbjct: 191 SIYSRIRSNPFPLEWLW 207 >gi|224538975|ref|ZP_03679514.1| hypothetical protein BACCELL_03872 [Bacteroides cellulosilyticus DSM 14838] gi|224519421|gb|EEF88526.1| hypothetical protein BACCELL_03872 [Bacteroides cellulosilyticus DSM 14838] Length = 1624 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 2/86 (2%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLL 66 Q++++ +S+ + E +++ +R V+A GSGKT +LV ++ LLL + LL Sbjct: 1064 QKYNQLFGQLSKRQME-IISDKDSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLL 1122 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHL 92 LT ++AAA E R++E+I +H Sbjct: 1123 MLTFSRAAATEFKQRLMELIGNAAHF 1148 >gi|149278325|ref|ZP_01884463.1| UvrD/REP helicase domain protein [Pedobacter sp. BAL39] gi|149231091|gb|EDM36472.1| UvrD/REP helicase domain protein [Pedobacter sp. BAL39] Length = 1080 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 3/127 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AGSGKT L L +LL+ +L +T T A EM R++E++ ++ ++ Sbjct: 10 LQASAGSGKTFSLTAHYLTILLSGETKYREILAVTFTNKATEEMKTRIMEVLRGFATAAE 69 Query: 95 EILSAEITKIQGKKP-NKSDMS-KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 E+ + ++G ++ ++ K+ + IL V TI F + +++ F E Sbjct: 70 EVEDYRLLVLKGHPDLDRQELQEKSARIYKRILHDYSRFSVSTIDGFVQKVIRGFAFELG 129 Query: 153 ITSHFAI 159 + S +A+ Sbjct: 130 LDSGYAL 136 >gi|39935869|ref|NP_948145.1| UvrD/REP helicase [Rhodopseudomonas palustris CGA009] gi|39649723|emb|CAE28244.1| ATP-dependent DNA helicase [Rhodopseudomonas palustris CGA009] Length = 687 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 33/56 (58%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 P V A AGSGKT+ L RV L++ A P +L +T ++ AAAEM+ RV I Sbjct: 27 PCPPLLVIAGAGSGKTNTLAHRVAHLVVGGADPYRILLMTFSRRAAAEMTRRVERI 82 >gi|154933919|gb|ABS88757.1| StkZ [Myxococcus xanthus] Length = 651 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 12/100 (12%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS------- 90 A AGSGKT L RV R+L P+ +L LT T AA EM+ RV E+ A+ Sbjct: 3 AGAGSGKTRTLTFRVARMLERGVPPAGILLLTFTNKAAREMTRRVEELAGAFVDVRRILG 62 Query: 91 ---HLSDEILSAEITKIQGKKPNKS--DMSKARHLLITIL 125 H + +L + + G N + D AR L++T + Sbjct: 63 GTFHHAAHVLLRQYAGVLGFSTNFTVLDREDARDLMVTCI 102 >gi|72160928|ref|YP_288585.1| DNA helicase [Thermobifida fusca YX] gi|71914660|gb|AAZ54562.1| putative DNA helicase [Thermobifida fusca YX] Length = 1108 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 6/88 (6%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAE 77 T + + + P R V A AGSGK+ + RV+ L+AN H P +L LT T+ AAAE Sbjct: 20 TPEQAAVIAAPLRPGLVVAGAGSGKSETMAARVV-WLVANGHVRPEQVLGLTFTRKAAAE 78 Query: 78 MSHRV---LEIITAWSHLSDEILSAEIT 102 ++ RV L+ + + D++L E T Sbjct: 79 LAERVRKRLDQLRGAGVVPDDVLDGEPT 106 >gi|167772669|ref|ZP_02444722.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM 17241] gi|167665147|gb|EDS09277.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM 17241] Length = 866 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 48/189 (25%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L + + ++++ D S + A AG+GKT L +RV L+++ A P +LCLT T A Sbjct: 20 LHAPNEQQRVVIGDTAHSILLLAGAGTGKTDTLARRVANLIVSGAAAPEEILCLTFTNRA 79 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 EM R+ E ++ E + + V Sbjct: 80 CREMIERI------------ETVAGEAAR--------------------------DVAVH 101 Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTL--------ASIMLDNN 185 T+H+FC ++++ P ++ F + D + +++ A + TL A I+LD Sbjct: 102 TVHSFCARMLRETPAARTDLGRDFTVCDAADALEIVRLAVERTLGREIDGRSAQILLDFI 161 Query: 186 EELKKAFYE 194 +K A E Sbjct: 162 GLVKDAMLE 170 >gi|169628149|ref|YP_001701798.1| putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus ATCC 19977] gi|169240116|emb|CAM61144.1| Putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus] Length = 807 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 40/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ LL A + P +L +T T AAAEM RV I+ Sbjct: 44 IVAGAGSGKTAVLTRRIAYLLAARDVSPGQILAITFTNKAAAEMRERVGRIVA------- 96 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 ++Q + V T H+ C I++ Q L + Sbjct: 97 -------NRVQ------------------------SMWVSTFHSSCVRILRNQASLLPGL 125 Query: 154 TSHFAIADEEQSKKLIE 170 S+F+I D + S++L++ Sbjct: 126 NSNFSIYDSDDSRRLLQ 142 >gi|256751132|ref|ZP_05492014.1| UvrD-like DNA helicase [Thermoanaerobacter ethanolicus CCSD1] gi|256750038|gb|EEU63060.1| UvrD-like DNA helicase [Thermoanaerobacter ethanolicus CCSD1] Length = 119 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 26/116 (22%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++ L+ +P LL +T T AAA+EM R+ E + A Sbjct: 22 VAAAAGSGKTAVLVERIINLITDEENPVDIDRLLVVTFTNAAASEMRERIAEALIA---- 77 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-EAIMQQF 147 I + P ++ LL + TIH+FC E + F Sbjct: 78 -----------ILDQNPEDKRLANQLTLL-------NKATITTIHSFCLEVVRNNF 115 >gi|70726984|ref|YP_253898.1| hypothetical protein SH1983 [Staphylococcus haemolyticus JCSC1435] gi|123659798|sp|Q4L4Y3|ADDA_STAHJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|68447708|dbj|BAE05292.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 1225 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 45/189 (23%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + V+A AGSGKT +LV+R+++ ++ + LL +T T +A EM HRV + I S Sbjct: 26 QDVLVAAAAGSGKTAVLVERIIQKIIRDEIDVDKLLVVTFTNLSAREMKHRVDQRIQQAS 85 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + D P + R I I + ++ T+H+FC I+QQ Sbjct: 86 -IED--------------PRNEHLKNQR---IKIHQA----QISTLHSFCLKIIQQ---- 119 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-EDIE--TL 207 H+ + D + + + I S + +++L L+++ E+LE D DIE TL Sbjct: 120 -----HYDVIDLDPNFRTI-----SDVENVLL-----LEQSIDEVLEKHYDTPDIEFLTL 164 Query: 208 ISDIISNRT 216 + + S+R Sbjct: 165 VEQLSSDRN 173 >gi|212550968|ref|YP_002309285.1| ATP-dependent DNA helicase II [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549206|dbj|BAG83874.1| ATP-dependent DNA helicase II [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 743 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 +++++ E ++ +D + V A AGSGKT ++ ++ LL P ++L LT T AA Sbjct: 8 LNESQREAVIYNDG--PSLVIAGAGSGKTRVITYKIAYLLKNGISPHSILALTFTNKAAR 65 Query: 77 EMSHRVLEII 86 EM RV EII Sbjct: 66 EMKVRVTEII 75 >gi|149194507|ref|ZP_01871603.1| ATP-DEPENDENT HELICASE [Caminibacter mediatlanticus TB-2] gi|149135251|gb|EDM23731.1| ATP-DEPENDENT HELICASE [Caminibacter mediatlanticus TB-2] Length = 673 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 17 ISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S+ +EQ A+ P V A+AG+GKT +V R+ LL P +L LT T AA Sbjct: 3 LSKLNNEQFQAATAPFGFNLVIASAGTGKTSTIVGRIAHLLENGLKPEEILLLTFTNKAA 62 Query: 76 AEMSHRVLEII 86 EM RV ++I Sbjct: 63 IEMKERVSQVI 73 >gi|255326665|ref|ZP_05367741.1| ATP-dependent DNA helicase PcrA [Rothia mucilaginosa ATCC 25296] gi|255295882|gb|EET75223.1| ATP-dependent DNA helicase PcrA [Rothia mucilaginosa ATCC 25296] Length = 990 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL + A P +L +T T AAAEM R+ ++ Sbjct: 167 IVAGAGSGKTRVLTHRIAYLLATHRATPGQILAITFTNKAAAEMRERIEALVG------- 219 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +A+H+ I+ T H+FC ++++ + Sbjct: 220 --------------------PRAKHMWIS-----------TFHSFCVRVLRREAAALGLK 248 Query: 155 SHFAIADEEQSKKLI 169 S F I D S++L+ Sbjct: 249 STFTIYDSTDSQRLL 263 >gi|168334042|ref|ZP_02692261.1| Recombination helicase AddA [Epulopiscium sp. 'N.t. morphotype B'] Length = 1186 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 30/182 (16%) Query: 22 SEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST----LLCLTHTKAAAA 76 +EQ LA D ++ VSA AGSGKT +L +RV++ +L L +T T AAA+ Sbjct: 5 TEQQLAIDLQDKNILVSAAAGSGKTAVLTERVIKRVLNTGKNRVDIDRFLIVTFTNAAAS 64 Query: 77 EMSHRV-LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ +++ A S +D E+ +Q + L G + T Sbjct: 65 EMKERIEIKLGDALSTAAD---GEEVDYLQKQ-----------------LGLLGKASIST 104 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ E + + E+++ L A L + EE AFY++ Sbjct: 105 IHSFCGKLIRTHFNELGLEPNMRTCTEQEATLLQNLAVTDILTAAF----EEESDAFYQL 160 Query: 196 LE 197 + Sbjct: 161 CD 162 >gi|192291516|ref|YP_001992121.1| UvrD/REP helicase [Rhodopseudomonas palustris TIE-1] gi|192285265|gb|ACF01646.1| UvrD/REP helicase [Rhodopseudomonas palustris TIE-1] Length = 687 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 33/56 (58%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 P V A AGSGKT+ L RV L++ A P +L +T ++ AAAEM+ RV I Sbjct: 27 PCPPLLVIAGAGSGKTNTLAHRVAHLVVGGADPYRILLMTFSRRAAAEMTRRVERI 82 >gi|294630996|ref|ZP_06709556.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. e14] gi|292834329|gb|EFF92678.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. e14] Length = 841 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 53/135 (39%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL HP +L +T T AA EM RV ++ Sbjct: 105 IVAGAGSGKTRVLTHRIAYLLAERGVHPGQILAITFTNKAAGEMKERVEHLV-------- 156 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + N + V T H+ C I+++ T Sbjct: 157 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKRLGFT 186 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 187 SSFSIYDAADSKRLM 201 >gi|224826111|ref|ZP_03699214.1| UvrD/REP helicase [Lutiella nitroferrum 2002] gi|224601748|gb|EEG07928.1| UvrD/REP helicase [Lutiella nitroferrum 2002] Length = 715 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL+S EQL A P +SA V A AGSGKT +L R+ L+ P+ +L +T T Sbjct: 3 DLLSGLNPEQLSAVTWPAKSALVLAGAGSGKTRVLTTRIAWLIQTGQVSPAGILAVTFTN 62 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 63 KAAREMQTRLGAMI 76 >gi|295099324|emb|CBK88413.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Eubacterium cylindroides T2-87] Length = 492 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 33/198 (16%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78 +K++Q ++ VSA+AGSGKT +LV+R+ +L+L + +L +T T+ AA EM Sbjct: 4 SKAQQQAIDLRNKNILVSASAGSGKTSVLVERLCKLVLVDKISIDRILAMTFTEDAANEM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + A + +D I S + +LET + TI Sbjct: 64 KDRLKKRLQAETQ-TDYIQSQ----------------------LALLETAS---ICTIDG 97 Query: 139 FCEAIMQQFPLEANITSHF--AIADEEQSKKLIEEAKKSTLASIMLDNNEELK-KAFYEI 195 FC +I++ + + I+ ++A Q+ K +A SI + N+ +K K F+ Sbjct: 98 FCLSIVKNYYYKIPISYKMSKSVASSAQANKAFLDAYNEACNSI--NTNDFVKLKLFFSS 155 Query: 196 LEISNDEDIETLISDIIS 213 L + D DI + I D+I+ Sbjct: 156 LGKTED-DILSNIRDLIN 172 >gi|149916945|ref|ZP_01905446.1| ATP-dependent DNA helicase, UvrD/REP family protein [Plesiocystis pacifica SIR-1] gi|149822223|gb|EDM81614.1| ATP-dependent DNA helicase, UvrD/REP family protein [Plesiocystis pacifica SIR-1] Length = 1027 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 72/165 (43%), Gaps = 13/165 (7%) Query: 36 VSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 ++A AG+GKTH LV L L A P+ + +T T+ AA E+ R++ Sbjct: 29 LAAGAGAGKTHALVTVALGLYAGTPGEAGGRAPLEPTEVWAVTFTEKAARELRQRIVARA 88 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 +A + + L+ E + + + R +L + P G T H+ C +++ Sbjct: 89 SALARDPEGALADEPELVAMLGDARPSAGRWRAILEQLPLAPIG----TFHSLCAQVLRS 144 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + +EA + F + +E + +L++ L + D + + A Sbjct: 145 YAVEAGVDPSFEVLEENGAAELLDGVLDEVLLRELEDPDSHTRAA 189 >gi|256396908|ref|YP_003118472.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928] gi|256363134|gb|ACU76631.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928] Length = 1124 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 34/169 (20%) Query: 23 EQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 EQL A + P A + A AGSGKT ++ RV+ L+ P +L LT T AAAE++ Sbjct: 19 EQLEAITAPLEPAVIVAGAGSGKTTVMAARVVWLVGTGQVGPHEVLGLTFTNKAAAELAE 78 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ + A L DE L P+ SD++ E+ G V T HA+ Sbjct: 79 RIRK---ALRKLEDEELD---------DPD-SDLT----------ESVGEPTVSTYHAYA 115 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + ++++ L + E S +L+ +A + LA + +EL+ Sbjct: 116 DRLIKEHGLRLGL---------EPSARLLADATRYQLAVTAVRGPKELR 155 >gi|256421211|ref|YP_003121864.1| exodeoxyribonuclease V [Chitinophaga pinensis DSM 2588] gi|256036119|gb|ACU59663.1| Exodeoxyribonuclease V [Chitinophaga pinensis DSM 2588] Length = 1152 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 5/142 (3%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV-LEIITAWS 90 S + A+AG+GKT+ + VLRL+L N +L +T TKAA AE+ R+ L + TA+ Sbjct: 20 SNLIEASAGTGKTYSIAILVLRLVLENGLSIKEILMVTFTKAAVAELEERIRLFVRTAYK 79 Query: 91 -HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 E I ++ + ++ ++ + L + V TIH+FC+ + +F Sbjct: 80 ISQGQETRDENIFRLVEEAVERNGLAAVQQQLRDAVLFLDETAVLTIHSFCQKTLNEFAF 139 Query: 150 EANITSHFAIADEEQSKKLIEE 171 E + F + +K LI E Sbjct: 140 ETD--QLFGAEMIQDTKTLIAE 159 >gi|217968983|ref|YP_002354217.1| UvrD/REP helicase [Thauera sp. MZ1T] gi|217506310|gb|ACK53321.1| UvrD/REP helicase [Thauera sp. MZ1T] Length = 745 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 26/51 (50%), Positives = 31/51 (60%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT L RV RL A A P+ +L LT ++ AA EM RV I+ Sbjct: 58 VIAGAGSGKTGTLAHRVARLAAAGADPARILLLTFSRRAADEMGRRVRRIL 108 >gi|329942325|ref|ZP_08291135.1| uvrD/REP helicase family protein [Chlamydophila psittaci Cal10] gi|328815235|gb|EGF85223.1| uvrD/REP helicase family protein [Chlamydophila psittaci Cal10] Length = 724 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 11/121 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLE-IITAWSH 91 ++ A+AG+GKT + Q VLR LL +H +L +T T AA E+ R+ E + A S Sbjct: 18 FLEASAGTGKTFTIEQIVLRALLEGSVSHVENILVVTFTNAATNELKLRIQENLKQAASQ 77 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITI---LETPGGLKVQTIHAFCEAIMQQ-F 147 L I + E P S + L + + L + + + TIH FC ++QQ F Sbjct: 78 LKSAITNPE----HPLPPYLSPPCDVKQLYMQVRNALASIDRMAIFTIHGFCNYVLQQHF 133 Query: 148 P 148 P Sbjct: 134 P 134 >gi|329955597|ref|ZP_08296505.1| ATP-dependent DNA helicase, RecQ family [Bacteroides clarus YIT 12056] gi|328526000|gb|EGF53024.1| ATP-dependent DNA helicase, RecQ family [Bacteroides clarus YIT 12056] Length = 1624 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAAAEMSHRV 82 ++++ +R V+A GSGKT +LV ++ LLL + LL LT ++AAA E R+ Sbjct: 1079 EIISDKDSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLLMLTFSRAAATEFKQRL 1138 Query: 83 LEIITAWSHL 92 +E+I +H Sbjct: 1139 MELIGNAAHF 1148 >gi|29830006|ref|NP_824640.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680] gi|29607116|dbj|BAC71175.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680] Length = 861 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL + HP +L +T T AA EM RV +++ Sbjct: 90 IVAGAGSGKTRVLTHRIAHLLGERHVHPGQILAITFTNKAAGEMKERVEQLV-------- 141 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + N + V T H+ C I+++ T Sbjct: 142 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKRLGFT 171 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 172 SSFSIYDAADSKRLM 186 >gi|316934039|ref|YP_004109021.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1] gi|315601753|gb|ADU44288.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1] Length = 687 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 32/50 (64%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT+ L RV L++ A P +L +T ++ AAAEM+ RV I Sbjct: 33 VIAGAGSGKTNTLAHRVAHLVVGGADPYRILLMTFSRRAAAEMTRRVERI 82 >gi|301156005|emb|CBW15476.1| DNA-dependent ATPase I and helicase II [Haemophilus parainfluenzae T3T1] Length = 725 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 37/165 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ +T Sbjct: 4 SELLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ + ++ H + Sbjct: 62 FTNKAAAEMRHRIQDTLS--KHAQSNLF-------------------------------- 87 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 G+ + T H+ +++ L+ N+ F I D E +L++ K Sbjct: 88 GMWIGTFHSIAHRLLRAHHLDVNLPQDFQILDSEDQLRLVKRLMK 132 >gi|107022515|ref|YP_620842.1| UvrD/REP helicase [Burkholderia cenocepacia AU 1054] gi|105892704|gb|ABF75869.1| ATP-dependent DNA helicase UvrD [Burkholderia cenocepacia AU 1054] Length = 846 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A + P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 62 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 121 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 122 KAAREMMARL 131 >gi|167762884|ref|ZP_02435011.1| hypothetical protein BACSTE_01248 [Bacteroides stercoris ATCC 43183] gi|167699224|gb|EDS15803.1| hypothetical protein BACSTE_01248 [Bacteroides stercoris ATCC 43183] Length = 1151 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 13/133 (9%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95 A+AGSGKT L ++LL+ N +L +T T A AEM R+L ++ W D Sbjct: 32 ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILTQLYGIWKE--DP 89 Query: 96 ILSAEITKIQ---GKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 A + +I+ KKP + +S +A L +L +V+TI +F +++M+ Sbjct: 90 ASDAYLKRIKEDLAKKPETASLSDRELRQRAGMALQYMLHDYSRFRVETIDSFFQSVMRN 149 Query: 147 FPLEANITSHFAI 159 E ++ + I Sbjct: 150 LARELELSPNLNI 162 >gi|312130397|ref|YP_003997737.1| uvrd/rep helicase [Leadbetterella byssophila DSM 17132] gi|311906943|gb|ADQ17384.1| UvrD/REP helicase [Leadbetterella byssophila DSM 17132] Length = 757 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 29/49 (59%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ L+ P +L LT T AA EM HR+ ++I Sbjct: 27 AGAGSGKTRVLTYRIAYLIEKGVDPFNILALTFTNKAAEEMRHRIEKVI 75 >gi|326790761|ref|YP_004308582.1| recombination helicase AddA [Clostridium lentocellum DSM 5427] gi|326541525|gb|ADZ83384.1| recombination helicase AddA [Clostridium lentocellum DSM 5427] Length = 1251 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 22/127 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEIITAWS 90 VSA AGSGKT +L +RV++ ++ + L +T T AAA EM R+L+ ++ + Sbjct: 20 VSAAAGSGKTAVLTERVMKRIIGSEQEVPIEIDRFLIVTFTSAAAGEMKERILQKLSDYM 79 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC----EAIMQQ 146 + E L N+ ++ K ++ + P + TIH+FC A + Sbjct: 80 NGLQENL------------NEENLKKIDYIERQMALVPQA-SISTIHSFCLKTIRAYFNR 126 Query: 147 FPLEANI 153 ++ NI Sbjct: 127 LDIDPNI 133 >gi|148272377|ref|YP_001221938.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830307|emb|CAN01241.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 1091 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 3/74 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCL 68 +E +DL S T+ ++ + P V A AGSGKT + RV+ LLAN H +L L Sbjct: 26 AEALDLPSPTEQQRRVIESPLEPGLVVAGAGSGKTETMASRVV-WLLANGHVGVEEILGL 84 Query: 69 THTKAAAAEMSHRV 82 T T+ AA E+ R+ Sbjct: 85 TFTRKAAGELGVRI 98 >gi|78213176|ref|YP_381955.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus sp. CC9605] gi|78197635|gb|ABB35400.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp. CC9605] Length = 1226 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 17/127 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV----------LE 84 + A+AG+GKT L LRL+ HP LL +T T AAA E+ R+ LE Sbjct: 35 LEASAGTGKTFALAHLCLRLITEADHPLEALLVVTFTDAAAEELRSRIGQRLQQALQGLE 94 Query: 85 IITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + ++ D +L+ + G +P + RHLL+ LE + TIH FC Sbjct: 95 QLDQGMKAYAPDPVLADWLA---GSEPGDARQRWIRHLLVA-LEQLDRADITTIHGFCRR 150 Query: 143 IMQQFPL 149 +++ L Sbjct: 151 SLRRLAL 157 >gi|320527942|ref|ZP_08029108.1| putative ATP-dependent DNA helicase PcrA [Solobacterium moorei F0204] gi|320131568|gb|EFW24132.1| putative ATP-dependent DNA helicase PcrA [Solobacterium moorei F0204] Length = 743 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 39/138 (28%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT +L R++ L+ + P+ +L +T T AA EM RV Sbjct: 44 AGAGSGKTRVLTMRIVHLIEDEDVWPTKILAITFTNKAANEMKERV-------------- 89 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 R++L + P V TIH+ C I+++ + + Sbjct: 90 ---------------------RNMLASQTSAPW---VSTIHSLCVRILREDIIAMGYPRN 125 Query: 157 FAIADEEQSKKLIEEAKK 174 F I D E K +++EA K Sbjct: 126 FTIMDTEDQKSVLKEAYK 143 >gi|313884923|ref|ZP_07818675.1| ATP-dependent DNA helicase PcrA [Eremococcus coleocola ACS-139-V-Col8] gi|312619614|gb|EFR31051.1| ATP-dependent DNA helicase PcrA [Eremococcus coleocola ACS-139-V-Col8] Length = 787 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 45/187 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 ++IDL++ + + +L ++ ++A AGSGKT +L R+ L+ A +P +L +T Sbjct: 6 KSIDLLNDRQRQAVLTTEG--PVLIAAGAGSGKTRVLTHRIAYLVQAKQVNPWNILAITF 63 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV ++ +AE Sbjct: 64 TNKAANEMKERVQALVGP---------AAE-----------------------------S 85 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + V T HA C I+++ + +S+F I D+ + L+ K+ L + LD + K Sbjct: 86 IWVSTFHAMCARILRREAAKVGYSSNFTIIDQGEQATLM----KNILKELNLDGKQFNYK 141 Query: 191 AFYEILE 197 F +++ Sbjct: 142 DFLYVID 148 >gi|88811284|ref|ZP_01126540.1| DNA-dependent ATPase I and helicase II [Nitrococcus mobilis Nb-231] gi|88791823|gb|EAR22934.1| DNA-dependent ATPase I and helicase II [Nitrococcus mobilis Nb-231] Length = 736 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 47/195 (24%), Positives = 74/195 (37%), Gaps = 45/195 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 + S ID ++ + E + A P V A AGSGKT +L R LL A A ++L Sbjct: 13 DSSNLIDSLNAAQREAVTA--PCGRTLVLAGAGSGKTRVLTHRAAWLLQAEEASAYSILA 70 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM R+ ++ Sbjct: 71 VTFTNKAAAEMRGRIAGLVGI--------------------------------------A 92 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ EA + HF I D E ++LI + TL ++ +D + Sbjct: 93 AGGMWIGTFHGLAHRLLRLHWREAGLPQHFQILDAEDQRRLI----RRTLRNLEIDESRW 148 Query: 188 LKKAFYEILEISNDE 202 + + DE Sbjct: 149 PPRQIQGFINARKDE 163 >gi|288926530|ref|ZP_06420448.1| putative UvrD/REP helicase domain protein [Prevotella buccae D17] gi|288336672|gb|EFC75040.1| putative UvrD/REP helicase domain protein [Prevotella buccae D17] Length = 1116 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 14/163 (8%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95 A+AGSGKT L +RL++ N T+L +T T A EM R+L ++ W +D+ Sbjct: 9 ASAGSGKTFTLATEYIRLVIDNPTAYRTILAVTFTNKATEEMKLRILSQLYGIWR--ADK 66 Query: 96 ILSAEITKIQ--GKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 K++ + P + +A L ++ +V+TI F +++++ E ++ Sbjct: 67 ASEGYYNKVKETSELPEREIRKRAGMALRNLIHNYNYFRVETIDTFFQSVLRNLARELDL 126 Query: 154 TSHFAIA------DEEQSKKLIE--EAKKSTLASIMLDNNEEL 188 T++ I +++ +LIE +AK L IM NE + Sbjct: 127 TANLRIGLNDYQVEQQAVDRLIEDLDAKNPVLGWIMDYINENI 169 >gi|242045726|ref|XP_002460734.1| hypothetical protein SORBIDRAFT_02g034000 [Sorghum bicolor] gi|241924111|gb|EER97255.1| hypothetical protein SORBIDRAFT_02g034000 [Sorghum bicolor] Length = 1185 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 31/51 (60%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A GSGKT +V RVL LL PS +L +T T AAA+EM R+ ++ Sbjct: 325 IVAGPGSGKTSTMVGRVLTLLKEGIPPSNILAMTFTTAAASEMRERIGTVV 375 >gi|256831910|ref|YP_003160637.1| ATP-dependent DNA helicase PcrA [Jonesia denitrificans DSM 20603] gi|256685441|gb|ACV08334.1| ATP-dependent DNA helicase PcrA [Jonesia denitrificans DSM 20603] Length = 833 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ LL A PS +L +T T AAAEM RV++I+ Sbjct: 69 IVAGAGSGKTRVLTHRIAWLLATGRAWPSEILAITFTNKAAAEMRERVIQIV 120 >gi|191638484|ref|YP_001987650.1| ATP-dependent nuclease, subunit A [Lactobacillus casei BL23] gi|251764527|sp|B3WEJ1|ADDA_LACCB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|190712786|emb|CAQ66792.1| ATP-dependent nuclease, subunit A [Lactobacillus casei BL23] gi|327382519|gb|AEA53995.1| ATP-dependent nuclease subunit A [Lactobacillus casei LC2W] gi|327385716|gb|AEA57190.1| ATP-dependent nuclease subunit A [Lactobacillus casei BD-II] Length = 1234 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 17/153 (11%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEM 78 T S+Q + VSA+AGSGKT +LV+R++ ++L +A + +L +T T+AA AEM Sbjct: 5 TTSQQAAITHDGHDVLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAATAEM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 ++ + K ++ ++ RHL I K+ T+ A Sbjct: 65 RTKI---------------QTALKKALTERRHELSGEDRRHLANQIAMVNAA-KISTLDA 108 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 F I+Q + ++ F + +E + +++E Sbjct: 109 FSLQIVQTYYYVIDLDPGFRLLTDETERYMLQE 141 >gi|222084834|ref|YP_002543363.1| ATP-dependent DNA helicase protein [Agrobacterium radiobacter K84] gi|221722282|gb|ACM25438.1| ATP-dependent DNA helicase protein [Agrobacterium radiobacter K84] Length = 689 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 31/50 (62%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT+ L RV L++ A P +L +T ++ AAAEM RV I Sbjct: 34 VIAGAGSGKTNTLAHRVAHLIVKGADPRRILLMTFSRRAAAEMGRRVERI 83 >gi|254525779|ref|ZP_05137831.1| UvrD/REP helicase domain protein [Prochlorococcus marinus str. MIT 9202] gi|221537203|gb|EEE39656.1| UvrD/REP helicase domain protein [Prochlorococcus marinus str. MIT 9202] Length = 1208 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 12/128 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A+AG+GK+ L VLR +L P +L L+ TK +E+ ++L + + +L Sbjct: 15 VEASAGTGKSFTLSHIVLRNVLEKKVKPDEILLLSFTKNTCSELRDKIL---SRFHNLKL 71 Query: 95 EILSAEITKIQGKKP----NKSDMSKARHLLIT----ILETPGGLKVQTIHAFCEAIMQQ 146 + S KI N D K++ +I+ + LKV T HAFC I+ + Sbjct: 72 YLQSHNEIKIDNTLKDWYLNFKDKDKSKEKIISEIDNFINQFYKLKVTTFHAFCNNIIDE 131 Query: 147 FPLEANIT 154 + +E +T Sbjct: 132 YSIEIGLT 139 >gi|116494973|ref|YP_806707.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus casei ATCC 334] gi|122263609|sp|Q038V7|ADDA_LACC3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116105123|gb|ABJ70265.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactobacillus casei ATCC 334] Length = 1234 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 17/153 (11%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEM 78 T S+Q + VSA+AGSGKT +LV+R++ ++L +A + +L +T T+AA AEM Sbjct: 5 TTSQQAAITHDGHDVLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAATAEM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 ++ + K ++ ++ RHL I K+ T+ A Sbjct: 65 RTKI---------------QTALKKALTERRHELSGEDRRHLANQIAMVNAA-KISTLDA 108 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 F I+Q + ++ F + +E + +++E Sbjct: 109 FSLQIVQTYYYVIDLDPGFRLLTDETERYMLQE 141 >gi|239631427|ref|ZP_04674458.1| DNA helicase/exodeoxyribonuclease V [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525892|gb|EEQ64893.1| DNA helicase/exodeoxyribonuclease V [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 1234 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 17/153 (11%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEM 78 T S+Q + VSA+AGSGKT +LV+R++ ++L +A + +L +T T+AA AEM Sbjct: 5 TTSQQAAITHDGHDVLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAATAEM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 ++ + K ++ ++ RHL I K+ T+ A Sbjct: 65 RTKI---------------QTALKKALTERRHELSGEDRRHLANQIAMVNAA-KISTLDA 108 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 F I+Q + ++ F + +E + +++E Sbjct: 109 FSLQIVQTYYYVIDLDPGFRLLTDETERYMLQE 141 >gi|226942221|ref|YP_002797294.1| DNA-dependent helicase II [Azotobacter vinelandii DJ] gi|226717148|gb|ACO76319.1| DNA helicase II, UvrD [Azotobacter vinelandii DJ] Length = 726 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 39/142 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P V A AGSGKT +LV R+ L+ + NA P +L +T T AAAEM R+ +++ Sbjct: 23 PLGPRLVLAGAGSGKTRVLVHRIAWLIEVENASPHAILAVTFTNKAAAEMRTRIEQLLGT 82 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +P G+ + T H +++ Sbjct: 83 --------------------------------------SPMGMWIGTFHGLAHRLLRAHW 104 Query: 149 LEANITSHFAIADEEQSKKLIE 170 EA + +F I D + ++L++ Sbjct: 105 QEAGLAENFQILDADDQQRLVK 126 >gi|294674328|ref|YP_003574944.1| UvrD/REP family ATP-dependent DNA helicase [Prevotella ruminicola 23] gi|294472390|gb|ADE81779.1| ATP-dependent DNA helicase, UvrD/REP family [Prevotella ruminicola 23] Length = 1075 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 6/127 (4%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHL--S 93 A+AGSGKT L +RLL+ N +L +T T A EM R+L ++ W L S Sbjct: 14 ASAGSGKTFTLATEYIRLLVENPQSYRNILAVTFTNKATEEMKMRILSQLYGIWKQLPES 73 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 D L TK G KP + +A L + +V+TI F +++++ E ++ Sbjct: 74 DNYLQNIQTKT-GLKP-EVISERAGIALNNLTHNYNYFRVETIDTFFQSVLRNMARELDL 131 Query: 154 TSHFAIA 160 T++ I Sbjct: 132 TTNLRIG 138 >gi|227535023|ref|ZP_03965072.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|301066540|ref|YP_003788563.1| ATP-dependent exoDNAse [Lactobacillus casei str. Zhang] gi|227187338|gb|EEI67405.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|300438947|gb|ADK18713.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus casei str. Zhang] Length = 1234 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 17/153 (11%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEM 78 T S+Q + VSA+AGSGKT +LV+R++ ++L +A + +L +T T+AA AEM Sbjct: 5 TTSQQAAITHDGHDVLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAATAEM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 ++ + K ++ ++ RHL I K+ T+ A Sbjct: 65 RTKI---------------QTALKKALTERRHELSGEDRRHLANQIAMVNAA-KISTLDA 108 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 F I+Q + ++ F + +E + +++E Sbjct: 109 FSLQIVQTYYYVIDLDPGFRLLTDETERYMLQE 141 >gi|206559816|ref|YP_002230580.1| putative helicase [Burkholderia cenocepacia J2315] gi|198035857|emb|CAR51748.1| putative helicase [Burkholderia cenocepacia J2315] Length = 818 Score = 47.8 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A + P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 34 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 93 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 94 KAAREMMARL 103 >gi|188585100|ref|YP_001916645.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349787|gb|ACB84057.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 726 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT +L R+ LL HP +L LT T AA EM RV I+ Sbjct: 27 VLAGAGSGKTKVLTYRIAYLLETKGIHPEQILALTFTNKAAGEMKERVQTIVEG 80 >gi|325107376|ref|YP_004268444.1| ATP-dependent DNA helicase, Rep family [Planctomyces brasiliensis DSM 5305] gi|324967644|gb|ADY58422.1| ATP-dependent DNA helicase, Rep family [Planctomyces brasiliensis DSM 5305] Length = 770 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 40/155 (25%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T S+Q V A GSGKT ++ QRV RL+ +P +L +T T AA+ Sbjct: 15 IQLTPSQQAAVEHVEGPMLVLAGPGSGKTRVVTQRVARLIEKGINPWNILAITFTNKAAS 74 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS R +QG ++ R+L ++ T Sbjct: 75 EMSER----------------------LQG-------LTDTRNLWVS-----------TF 94 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 H FC +++Q + +F I D K+ I++ Sbjct: 95 HRFCANVLRQRANVVGLQQNFTILDSADQKQAIKQ 129 >gi|304313385|ref|YP_003812983.1| Superfamily I DNA and RNA helicases [gamma proteobacterium HdN1] gi|301799118|emb|CBL47361.1| Superfamily I DNA and RNA helicases [gamma proteobacterium HdN1] Length = 738 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 42/153 (27%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 Q ++SD R V A AGSGKT +LV R+ L++A P +L +T T AAAEM HR Sbjct: 21 QAVSSDANR-LLVLAGAGSGKTRVLVHRIAWLVIARGLSPRGILAVTFTNKAAAEMRHR- 78 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIHAFCE 141 L T+L+ P G + V T H Sbjct: 79 --------------------------------------LQTLLQIPQGAMWVGTFHGIAH 100 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 +++ EA + F + D + +++++ + Sbjct: 101 RLLRLHWQEAKLPEQFQVMDSDDQQRVLKRVMR 133 >gi|315304458|ref|ZP_07874741.1| ATP-dependent nuclease subunit A [Listeria ivanovii FSL F6-596] gi|313627172|gb|EFR96022.1| ATP-dependent nuclease subunit A [Listeria ivanovii FSL F6-596] Length = 1236 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 41/208 (19%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV R++ L+ + LL +T T A+AAEM R+ + + Sbjct: 31 VAAAAGSGKTAVLVTRIIEKLIDETVKWNVDELLIVTFTNASAAEMKFRIGKAL------ 84 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 +E L + P+ + + K LL + T+H+FC I+++ EA+ Sbjct: 85 -EEALV--------QNPDSAHLKKQVALL-------NYASISTLHSFCLEIIRKHYFEAD 128 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212 I +F +LIE + S + +E L+ E I +++ L+ Sbjct: 129 IDPNF---------RLIEPIESSMI------RDEVLEDLLEEAYGIKDNDSFFHLVDSFT 173 Query: 213 SNRTALKL-IFFFFSYLWRRKIIEKSLW 239 +RT +L I Y + R E +W Sbjct: 174 GDRTDTELHILISKLYDFSRANPEPDIW 201 >gi|300694290|ref|YP_003750263.1| ATP-dependent DNA helicase ii protein (uvrd) [Ralstonia solanacearum PSI07] gi|299076327|emb|CBJ35640.2| putative atp-dependent dna helicase II protein (uvrD) [Ralstonia solanacearum PSI07] Length = 710 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 54/134 (40%), Gaps = 22/134 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKTH L RV L+ A P +L LT ++ AA+E+S R ++ H S Sbjct: 45 VLAGAGSGKTHTLGWRVAHLVANGADPQRILLLTFSRRAASELSSRAGHLLARAMHGSTG 104 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 SA T Q T L G T H +++++ + Sbjct: 105 ARSAAGTTYQ-----------------TALPWAG-----TFHGIGARLLREYAQRIGLAP 142 Query: 156 HFAIADEEQSKKLI 169 F I D S L+ Sbjct: 143 DFTIHDRSDSADLL 156 >gi|293606508|ref|ZP_06688866.1| UvrD/REP family ATP-dependent DNA helicase [Achromobacter piechaudii ATCC 43553] gi|292815131|gb|EFF74254.1| UvrD/REP family ATP-dependent DNA helicase [Achromobacter piechaudii ATCC 43553] Length = 699 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 31/51 (60%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT+ L RV L+L A P +L LT ++ AA EM RV ++ Sbjct: 42 VIAGAGSGKTNTLAHRVAHLILNGADPQRMLLLTFSRRAAQEMDRRVGSVL 92 >gi|90581055|ref|ZP_01236855.1| putative ATP-dependent DNA helicase Rep [Vibrio angustum S14] gi|90437751|gb|EAS62942.1| putative ATP-dependent DNA helicase Rep [Vibrio angustum S14] Length = 723 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 41/157 (26%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ LL + A P +++ +T T Sbjct: 7 LDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLVHRIAWLLSVEQASPYSIMSVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ S G+ Sbjct: 65 KAAAEMRGRINELMHGSS--------------------------------------AGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T H C +++ L+A + F I D + +L+ Sbjct: 87 NGTFHGLCHRMLRAHYLDARLPEDFNILDSDDQMRLL 123 >gi|330469984|ref|YP_004407727.1| UvrD/REP helicase [Verrucosispora maris AB-18-032] gi|328812955|gb|AEB47127.1| UvrD/REP helicase [Verrucosispora maris AB-18-032] Length = 1114 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 3/76 (3%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLL 66 E ++ + L + T+ + + + P V A AGSGKT + RV+ L+AN++ P +L Sbjct: 27 ELAKLLRLPAPTREQAAIIAAPVEPLLVVAGAGSGKTETMAARVV-WLVANSYVRPEQVL 85 Query: 67 CLTHTKAAAAEMSHRV 82 LT T+ AA E+ HRV Sbjct: 86 GLTFTRKAAGELGHRV 101 >gi|323143043|ref|ZP_08077748.1| UvrD/REP helicase [Succinatimonas hippei YIT 12066] gi|322417184|gb|EFY07813.1| UvrD/REP helicase [Succinatimonas hippei YIT 12066] Length = 688 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 67/165 (40%), Gaps = 41/165 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 ID +++ + E + S P + V A AG+GKT +LV R+ LL P +L +T T Sbjct: 6 IDPLNKEQKEAV--SAPLSNILVIAGAGTGKTRVLVSRIAWLLQVEMLLPREVLAVTFTN 63 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ E+I H D GL Sbjct: 64 KAAREMRERI-ELIMG--HSVD-----------------------------------GLW 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 T H+F I++ + +A + F + D + KKLI+ K L Sbjct: 86 ANTFHSFSLRILRNYAKQAGLLPDFTVLDTDNQKKLIKRILKEEL 130 >gi|315609029|ref|ZP_07883999.1| ATP-dependent helicase [Prevotella buccae ATCC 33574] gi|315249233|gb|EFU29252.1| ATP-dependent helicase [Prevotella buccae ATCC 33574] Length = 1121 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 14/163 (8%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95 A+AGSGKT L +RL++ N T+L +T T A EM R+L ++ W +D+ Sbjct: 14 ASAGSGKTFTLATEYIRLVIDNPTAYRTILAVTFTNKATEEMKLRILSQLYGIWR--ADK 71 Query: 96 ILSAEITKIQ--GKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 K++ + P + +A L ++ +V+TI F +++++ E ++ Sbjct: 72 ASEGYYNKVKETSELPEREIRKRAGMALRNLIHNYNYFRVETIDTFFQSVLRNLARELDL 131 Query: 154 TSHFAIA------DEEQSKKLIE--EAKKSTLASIMLDNNEEL 188 T++ I +++ +LIE +AK L IM NE + Sbjct: 132 TANLRIGLNDYQVEQQAVDRLIEDLDAKNPVLGWIMDYINENI 174 >gi|224438366|ref|ZP_03659293.1| ATP-dependent DNA helicase [Helicobacter cinaedi CCUG 18818] gi|313144808|ref|ZP_07807001.1| ATP-dependent DNA helicase [Helicobacter cinaedi CCUG 18818] gi|313129839|gb|EFR47456.1| ATP-dependent DNA helicase [Helicobacter cinaedi CCUG 18818] Length = 676 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Query: 17 ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S +EQL A+ P+ + A+AG+GKT +V R+ LL P +L LT T A+ Sbjct: 3 LSNLNAEQLAAATAPSGHNLIIASAGTGKTSTIVGRIAYLLQQGFKPKDILLLTFTNKAS 62 Query: 76 AEMSHRVLEIITAWSHLSDEILSA 99 +EM RV +I S L+ EI S Sbjct: 63 SEMIERVGKIF--GSSLAKEIESG 84 >gi|157413574|ref|YP_001484440.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9215] gi|157388149|gb|ABV50854.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9215] Length = 1208 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 12/128 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GK+ L VLR +L P +L L+ TK +E+ ++L + + +L Sbjct: 15 IEASAGTGKSFTLSHIVLRNVLEKKVKPDEILLLSFTKNTCSELRDKIL---SRFHNLKL 71 Query: 95 EILSAEITKIQGKKP----NKSDMSKARHLLIT----ILETPGGLKVQTIHAFCEAIMQQ 146 + S KI N D K++ +I+ + LKV T HAFC I+ + Sbjct: 72 YLQSHNEIKIDNTLKEWYLNFKDKDKSKEKIISEIDNFINQFYKLKVTTFHAFCNNIIDE 131 Query: 147 FPLEANIT 154 + +E +T Sbjct: 132 YSIEIGVT 139 >gi|124514841|gb|EAY56353.1| putative UvrD/REP helicase [Leptospirillum rubarum] Length = 649 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 S ++++++ + E + A P A V A AGSGKT +L RV LL +L LT Sbjct: 3 SRILNVLNEEQREAVTA--PDGPALVLAGAGSGKTRVLTHRVAWLLEKGVPAHRMLVLTF 60 Query: 71 TKAAAAEMSHRVLEIITA 88 TK AA + HR+ +++T Sbjct: 61 TKKAARVLQHRLADLLTG 78 >gi|94309177|ref|YP_582387.1| UvrD/REP helicase [Cupriavidus metallidurans CH34] gi|93353029|gb|ABF07118.1| putative ATP-dependent DNA helicase [Cupriavidus metallidurans CH34] Length = 702 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/49 (46%), Positives = 31/49 (63%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT+ L RV L++ A P +L LT ++ AA+EM RV I+ Sbjct: 48 AGAGSGKTNTLAHRVAHLVVNGADPRRILLLTFSRRAASEMGRRVERIV 96 >gi|217077082|ref|YP_002334798.1| ATP-dependent DNA helicase [Thermosipho africanus TCF52B] gi|217036935|gb|ACJ75457.1| ATP-dependent DNA helicase [Thermosipho africanus TCF52B] Length = 632 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 39/161 (24%) Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID ++ EQ A ++ V A GSGKT ++ ++ L+ + PS +L +T TK Sbjct: 2 IDFKAELDDEQYEAVVNSKGKTLVIAGPGSGKTRVITYKIAHLISSGVKPSEILLVTFTK 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA EM R K ++S T G+ Sbjct: 62 AAAKEMLQR------------------------AKLVSRS--------------TLDGIT 83 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T H C ++++ + +F I D E +K ++E A+ Sbjct: 84 AGTFHHICNLFLRKYGTIIGLKPNFTILDSEDAKDVMESAR 124 >gi|89074458|ref|ZP_01160935.1| putative ATP-dependent DNA helicase Rep [Photobacterium sp. SKA34] gi|89049746|gb|EAR55296.1| putative ATP-dependent DNA helicase Rep [Photobacterium sp. SKA34] Length = 723 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 41/157 (26%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ LL + A P +++ +T T Sbjct: 7 LDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLVHRIAWLLSVEQASPYSIMSVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ S G+ Sbjct: 65 KAAAEMRGRINELMHGSS--------------------------------------AGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T H C +++ L+A + F I D + +L+ Sbjct: 87 NGTFHGLCHRMLRAHYLDARLPEDFNILDSDDQMRLL 123 >gi|260061427|ref|YP_003194507.1| ATP-dependent helicase [Robiginitalea biformata HTCC2501] gi|88785559|gb|EAR16728.1| ATP-dependent helicase [Robiginitalea biformata HTCC2501] Length = 1039 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 10/143 (6%) Query: 37 SANAGSGKTHILVQRVLRLLLA--NAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 SA+AGSGKT+ L + L+LLL+ P +L +T T A E+ +R+L+ + A++ + Sbjct: 12 SASAGSGKTYTLTREYLKLLLSGQGGQPFREILAITFTNKAVGELKNRILDSLEAFAGVR 71 Query: 94 DE----ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 DE +L ++ G ++ ++ +L IL V TI F I++ F Sbjct: 72 DEAGRPVLFRDLQDELGTD-RETLARRSGRVLQEILHNYAFFDVSTIDRFNHRILRTFAR 130 Query: 150 EANITSHFAIADEEQSKKLIEEA 172 + + ++F + + + L+E+A Sbjct: 131 DLQLPANFEVVLD--TDALLEQA 151 >gi|172040209|ref|YP_001799923.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum DSM 7109] gi|171851513|emb|CAQ04489.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum DSM 7109] Length = 1022 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 63/158 (39%), Gaps = 49/158 (31%) Query: 23 EQLLAS-DPTRSAWVS---------ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 EQLLA +P + V A AGSGKT +L +R+ LL P +L +T T Sbjct: 162 EQLLAGLNPQQKEAVQHTGSPLLIVAGAGSGKTSVLTRRIAWLLSTGVAPWQILAITFTN 221 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV +++ P M Sbjct: 222 KAAAEMRERVADLV---------------------GPAAERMW----------------- 243 Query: 133 VQTIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLI 169 V T H+ C I++ L A + ++F I D + SK+LI Sbjct: 244 VSTFHSMCVRILRSNAHLVAGLNTNFTIYDSDDSKRLI 281 >gi|146337792|ref|YP_001202840.1| putative ATP-dependent DNA helicase [Bradyrhizobium sp. ORS278] gi|146190598|emb|CAL74600.1| Putative ATP-dependent DNA helicase [Bradyrhizobium sp. ORS278] Length = 686 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 33/56 (58%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 P + A AGSGKT+ L RV LL+ A P +L +T ++ AA+EMS RV I Sbjct: 29 PGPPLLIIAGAGSGKTNTLAHRVAHLLVNGADPRRILLMTFSRRAASEMSRRVERI 84 >gi|24214893|ref|NP_712374.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601] gi|24195918|gb|AAN49392.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601] Length = 672 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 38/127 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AG+GKT +V R+ +L+ + S++L LT ++ AA EM Sbjct: 31 VLAGAGTGKTKTIVSRLAQLVASGIPASSILLLTFSRKAAREM----------------- 73 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 IL A + I KK + E GG T H+FC ++++F +I+S Sbjct: 74 ILRASM--IGNKKCS---------------EVQGG----TFHSFCNGVLRKFAPVLDISS 112 Query: 156 HFAIADE 162 F I DE Sbjct: 113 GFTILDE 119 >gi|45657598|ref|YP_001684.1| ATP-dependent DNA helicase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600837|gb|AAS70321.1| atp-dependent DNA helicase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 672 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 38/127 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AG+GKT +V R+ +L+ + S++L LT ++ AA EM Sbjct: 31 VLAGAGTGKTKTIVSRLAQLVASGIPASSILLLTFSRKAAREM----------------- 73 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 IL A + I KK + E GG T H+FC ++++F +I+S Sbjct: 74 ILRASM--IGNKKCS---------------EVQGG----TFHSFCNGVLRKFAPVLDISS 112 Query: 156 HFAIADE 162 F I DE Sbjct: 113 GFTILDE 119 >gi|237811975|ref|YP_002896426.1| DNA helicase II [Burkholderia pseudomallei MSHR346] gi|237506796|gb|ACQ99114.1| DNA helicase II [Burkholderia pseudomallei MSHR346] Length = 787 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|300742291|ref|ZP_07072312.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa M567] gi|300381476|gb|EFJ78038.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa M567] Length = 844 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL A P +L +T T AAAEM R+ +I Sbjct: 22 IVAGAGSGKTRVLTHRIAHLLATGRATPGQILAITFTNKAAAEMRERIQALIG------- 74 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +A+H+ I+ T H+FC ++++ + Sbjct: 75 --------------------PRAQHMWIS-----------TFHSFCVRVLRREAKALGLK 103 Query: 155 SHFAIADEEQSKKLI 169 S F I D S++L+ Sbjct: 104 STFTIYDSADSQRLL 118 >gi|110637958|ref|YP_678165.1| ATP-dependent DNA helicase II [Cytophaga hutchinsonii ATCC 33406] gi|110280639|gb|ABG58825.1| ATP-dependent DNA helicase II [Cytophaga hutchinsonii ATCC 33406] Length = 749 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 26/45 (57%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ L+ P +L LT T AA EM HR+ Sbjct: 26 AGAGSGKTRVLTYRIAHLIQKGVEPFNILSLTFTNKAAKEMQHRI 70 >gi|282877529|ref|ZP_06286347.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310] gi|281300353|gb|EFA92704.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310] Length = 1082 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 14/185 (7%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95 A+AGSGKT L ++ ++ N ++L +T T A EM R+L + +H L D Sbjct: 19 ASAGSGKTFTLATEYMKRVIENPDAYRSILAVTFTNKATEEMKMRILSQLYGIAHGLPDS 78 Query: 96 ILSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + + KIQ P +A+ L +L +V+TI AF +++++ E ++ Sbjct: 79 --DSYLHKIQESIPFPCVKIRERAQKALGQLLHNYNYFRVETIDAFFQSVLRNLARELDL 136 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE--ISNDEDIETL--IS 209 T++ I E + K++ E+A + L N++L + YE + IS+D+ + I Sbjct: 137 TANLRI--ELRDKQVKEKAVDELIEE--LQPNDKLLRWIYEYIRQNISDDKSWNVIGEIK 192 Query: 210 DIISN 214 D SN Sbjct: 193 DFGSN 197 >gi|90413496|ref|ZP_01221487.1| putative exodeoxyribonuclease V [Photobacterium profundum 3TCK] gi|90325428|gb|EAS41911.1| putative exodeoxyribonuclease V [Photobacterium profundum 3TCK] Length = 1227 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 26/152 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT + LRLLL + + T +L +T T+AA AE+ R+ Sbjct: 44 IEASAGTGKTFTIASLYLRLLLGHGNAETRHASELTVDQILVVTFTEAATAELRDRIRAR 103 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 +I +D ++ +T I SD A +L+ + TIH F Sbjct: 104 IHDAQIAFCRGFSNDPVIEPLLTAI-------SDHKAAAQILLNAERQMDEAAIYTIHGF 156 Query: 140 CEAIMQQFPLEAN--ITSHFAIADEEQSKKLI 169 C+ ++ Q E+ + F + DE Q K L+ Sbjct: 157 CQRMLTQNAFESGSRFNNEF-VTDESQLKSLV 187 >gi|313682829|ref|YP_004060567.1| uvrd/rep helicase [Sulfuricurvum kujiense DSM 16994] gi|313155689|gb|ADR34367.1| UvrD/REP helicase [Sulfuricurvum kujiense DSM 16994] Length = 1102 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 45/146 (30%) Query: 36 VSANAGSGKTHILVQRVLRLL------------------LANAHPSTLLCLTHTKAAAAE 77 +SA AGSGKT+ L +R + +L L+ A P+ ++ +T+T+A A E Sbjct: 12 ISAGAGSGKTYTLSRRYINILVGFNLFYEGESSRPMLEALSPARPNEIVTITYTEAGALE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ--- 134 M R+ +I + I+GK K D + H + L+ P VQ Sbjct: 72 MKSRIFSLI-----------QNTLRYIEGKLDLKHDDYDSIHKALNPLDQPWIEHVQSML 120 Query: 135 -------------TIHAFCEAIMQQF 147 TIH++C +++QF Sbjct: 121 EHSLRYLSSATISTIHSYCLDLIEQF 146 >gi|332180434|gb|AEE16122.1| UvrD/REP helicase [Treponema brennaborense DSM 12168] Length = 1299 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHT 71 T + S+ EQ A R++ V+A AGSGKT +L R L+L P+ +L LT T Sbjct: 3 TAGIFSKLNEEQTAAVTAARNSVVAAGAGSGKTTVLAGRFAYLVLYRDIPAEKILTLTFT 62 Query: 72 KAAAAEMSHRV 82 K AAAEM R+ Sbjct: 63 KKAAAEMYARI 73 >gi|326202081|ref|ZP_08191951.1| LOW QUALITY PROTEIN: recombination helicase AddA [Clostridium papyrosolvens DSM 2782] gi|325987876|gb|EGD48702.1| LOW QUALITY PROTEIN: recombination helicase AddA [Clostridium papyrosolvens DSM 2782] Length = 1247 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 91/206 (44%), Gaps = 48/206 (23%) Query: 44 KTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100 KT +LV+R++R + P +LL +T T AAA EM R+ + +SD I Sbjct: 31 KTAVLVERIIRKITDAETPVDIDSLLVVTFTNAAATEMRERI------GAAISDSI---- 80 Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160 + N+ + +R L++ + TIH+FC LE I S+F Sbjct: 81 -------EKNQGSNNISRQLVLL-----NKASITTIHSFC--------LEV-IRSNFQSI 119 Query: 161 DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIISNRT--- 216 + + + K+++E + + L S E L + F EI E + +ED L+ SNR Sbjct: 120 EIDPTFKILDETEATLLKS------ETLSELFEEIYEDVEGNEDFFDLLESYGSNRDDEK 173 Query: 217 ----ALKLIFFFFSYLWRRKIIEKSL 238 L + F SY W K +E+ + Sbjct: 174 IQEMVLNIYSFVQSYPWPEKWLEQQV 199 >gi|83720350|ref|YP_443147.1| DNA helicase II [Burkholderia thailandensis E264] gi|167582159|ref|ZP_02375033.1| DNA helicase II [Burkholderia thailandensis TXDOH] gi|167620316|ref|ZP_02388947.1| DNA helicase II [Burkholderia thailandensis Bt4] gi|257139377|ref|ZP_05587639.1| DNA helicase II [Burkholderia thailandensis E264] gi|83654175|gb|ABC38238.1| DNA helicase II [Burkholderia thailandensis E264] Length = 787 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|206602356|gb|EDZ38837.1| Putative UvrD/REP helicase [Leptospirillum sp. Group II '5-way CG'] Length = 649 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 S ++++++ + E + A P A V A AGSGKT +L RV LL +L LT Sbjct: 3 SRILNVLNEEQREAVTA--PDGPALVLAGAGSGKTRVLTHRVAWLLEKGVPAHRMLVLTF 60 Query: 71 TKAAAAEMSHRVLEIITA 88 TK AA + HR+ +++T Sbjct: 61 TKKAARVLQHRLADLLTG 78 >gi|254374748|ref|ZP_04990229.1| hypothetical protein FTDG_00923 [Francisella novicida GA99-3548] gi|151572467|gb|EDN38121.1| hypothetical protein FTDG_00923 [Francisella novicida GA99-3548] Length = 1216 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 16/113 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLS 93 + A+AG+GKT + + +RLLL PS +L +T TK A E+ RV EI + + Sbjct: 17 IEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIRDVLASYT 76 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 DE +SD +HL ++LE + TIH FC+ I+ + Sbjct: 77 DE-------------KKESDKENYKHLKRSLLEIDEA-AIFTIHGFCKKILSE 115 >gi|34495660|ref|NP_899875.1| DNA helicase II [Chromobacterium violaceum ATCC 12472] gi|34101515|gb|AAQ57884.1| DNA helicase II [Chromobacterium violaceum ATCC 12472] Length = 713 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL++ EQL A P +SA V A AGSGKT +L R+ LL P+ +L +T T Sbjct: 3 DLLAGLNPEQLRAVTWPAKSALVLAGAGSGKTRVLTTRIAWLLSTGQTSPAGVLAVTFTN 62 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ ++ Sbjct: 63 KAAREMQTRLSALV 76 >gi|302818017|ref|XP_002990683.1| hypothetical protein SELMODRAFT_429070 [Selaginella moellendorffii] gi|300141605|gb|EFJ08315.1| hypothetical protein SELMODRAFT_429070 [Selaginella moellendorffii] Length = 1291 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 57/144 (39%), Gaps = 37/144 (25%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A GSGKT +V R+L LL +L +T T AAA EM RV ++ Sbjct: 271 IVAGPGSGKTSTMVARILTLLNEGVDSKNILGMTFTTAAATEMMDRVAAVV--------- 321 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 GK+ +K L + T H+FC + + + N TS Sbjct: 322 ----------GKEASKE------------------LMISTFHSFCLQLCRSHAEKLNRTS 353 Query: 156 HFAIADEEQSKKLIEEAKKSTLAS 179 F + Q +K + EA + L + Sbjct: 354 EFLVYGASQQRKAVIEATRLALEA 377 >gi|229552293|ref|ZP_04441018.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus rhamnosus LMS2-1] gi|258539702|ref|YP_003174201.1| ATP-dependent nuclease subunit A [Lactobacillus rhamnosus Lc 705] gi|229314365|gb|EEN80338.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus rhamnosus LMS2-1] gi|257151378|emb|CAR90350.1| ATP-dependent nuclease, subunit A [Lactobacillus rhamnosus Lc 705] Length = 1236 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 17/153 (11%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEM 78 T S+Q S VSA+AGSGKT +LV+R++ ++L +A + +L +T T+AA +EM Sbjct: 5 TPSQQAAISHHGHDMLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAATSEM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 ++ + + L+A K ++ + RHL I K+ T+ A Sbjct: 65 RTKIQTALK-------QTLTA--------KRHELNAEDRRHLANQIAMVNAA-KISTLDA 108 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 F I+Q + ++ F + +E + +++E Sbjct: 109 FSLQIVQTYYYVIDLDPGFRLLTDETERYMLQE 141 >gi|323139776|ref|ZP_08074812.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242] gi|322394980|gb|EFX97545.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242] Length = 687 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 33/56 (58%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 P V A AGSGKT+ L RV L++ A P +L +T ++ AAAEM+ RV I Sbjct: 26 PGGPLLVIAGAGSGKTNTLAHRVAHLIVNGADPRRILLMTFSRRAAAEMTRRVERI 81 >gi|46445643|ref|YP_007008.1| putative exodeoxyribonuclease V beta chain [Candidatus Protochlamydia amoebophila UWE25] gi|46399284|emb|CAF22733.1| putative exodeoxyribonuclease V beta chain [Candidatus Protochlamydia amoebophila UWE25] Length = 1166 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 13/140 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-----AHP-STLLCLTHTKAAAAEMSHRV------- 82 + A+AG+GKT + V+RLL+ N A P S +L +T TKAA ++ R+ Sbjct: 14 LEASAGTGKTFSIQNIVVRLLIENQLEQEALPLSKILVVTFTKAATRDLKLRIRLNIEYA 73 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 LE+ W S+ + + + + KA+ L L ++ TIHAFC Sbjct: 74 LEVFNEWLSHSNVLENTPDYLKAVIEAGIESVLKAKKKLQQALFEFDQAQIFTIHAFCAR 133 Query: 143 IMQQFPLEANITSHFAIADE 162 +++Q+ +E++I H + +E Sbjct: 134 MLRQYAIESDIGFHASYGEE 153 >gi|156564011|ref|YP_001429750.1| PcrA helicase [Bacillus phage 0305phi8-36] gi|154622708|gb|ABS83588.1| PcrA helicase [Bacillus phage 0305phi8-36] Length = 657 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 37/141 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT +L +RV +L P +L +T T AA EM R+ +E Sbjct: 40 VIAGAGSGKTRVLQKRVGYILENGIDPRRILTVTFTNKAATEMKERI----------GNE 89 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + A KI + T H+ + Q+ EA + Sbjct: 90 VGEARAKKIM---------------------------IGTFHSLAVRWLHQYYSEAGLKK 122 Query: 156 HFAIADEEQSKKLIEEAKKST 176 ++ I D E + K+I+E KS Sbjct: 123 NWTIFDSEDTNKVIKELLKSN 143 >gi|323499636|ref|ZP_08104604.1| DNA-dependent helicase II [Vibrio sinaloensis DSM 21326] gi|323315237|gb|EGA68280.1| DNA-dependent helicase II [Vibrio sinaloensis DSM 21326] Length = 723 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 41/157 (26%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 7 LDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E+ ++ + G+ Sbjct: 65 KAAAEMRGRIEEL--------------------------------------MMGSASGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T H C I++ L+A + F I D + +L+ Sbjct: 87 NGTFHGICHRILRAHYLDAKLPEDFQIIDTDDQVRLL 123 >gi|297625889|ref|YP_003687652.1| ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921654|emb|CBL56211.1| ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 829 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L +R+ L+ HP ++L +T T AAAEM RV E++ Sbjct: 65 VVAGAGSGKTRVLTRRIAWLIAQRGVHPGSILAITFTNKAAAEMRSRVAELV 116 >gi|116689464|ref|YP_835087.1| UvrD/REP helicase [Burkholderia cenocepacia HI2424] gi|116647553|gb|ABK08194.1| ATP-dependent DNA helicase UvrD [Burkholderia cenocepacia HI2424] Length = 787 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A + P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|170732770|ref|YP_001764717.1| UvrD/REP helicase [Burkholderia cenocepacia MC0-3] gi|169816012|gb|ACA90595.1| UvrD/REP helicase [Burkholderia cenocepacia MC0-3] Length = 787 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A + P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|317403517|gb|EFV84017.1| ATP-dependent DNA helicase [Achromobacter xylosoxidans C54] Length = 696 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 31/51 (60%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT+ L RV L+L A P +L LT ++ AA EM RV ++ Sbjct: 42 VIAGAGSGKTNTLAHRVAHLILNGADPQRMLLLTFSRRAAQEMERRVGSVL 92 >gi|189485139|ref|YP_001956080.1| RecB-like exodeoxyribonuclease V beta chain [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287098|dbj|BAG13619.1| RecB-like exodeoxyribonuclease V beta chain [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 1024 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 13/130 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS-- 90 V A+AG+GKT+ L +R L LLL+ N ++ +T T AA EM +RV++ + + Sbjct: 9 VLASAGTGKTYNLAKRYLYLLLSSNDNTSIKNIIAVTFTNKAAVEMKYRVIDYLKKAALS 68 Query: 91 -HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 D E+TK + + ++ +L I + + TI +F I++ + Sbjct: 69 LDTGDFFDELELTKDKIAQ-------RSAAVLKDIFKFYDNFNISTIDSFKNRILKSCAM 121 Query: 150 EANITSHFAI 159 +I+ +F I Sbjct: 122 SIDISPNFVI 131 >gi|305681998|ref|ZP_07404802.1| putative ATP-dependent DNA helicase PcrA [Corynebacterium matruchotii ATCC 14266] gi|305658471|gb|EFM47974.1| putative ATP-dependent DNA helicase PcrA [Corynebacterium matruchotii ATCC 14266] Length = 898 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 41/158 (25%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DLI+ +Q A + + S + A AGSGKT +L +R+ LL + P +L +T T Sbjct: 94 DLIADLNPQQRAAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLLRMRGVAPGQILAITFTN 153 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV++++ P + M Sbjct: 154 KAAAEMRDRVIDLV---------------------GPTATRMW----------------- 175 Query: 133 VQTIHAFCEAIM-QQFPLEANITSHFAIADEEQSKKLI 169 V T H+ C I+ +Q L + ++F I D + SK+L+ Sbjct: 176 VATFHSACVRILREQAHLLPGLNTNFTIYDADDSKRLL 213 >gi|167894600|ref|ZP_02482002.1| DNA helicase II [Burkholderia pseudomallei 7894] gi|167919264|ref|ZP_02506355.1| DNA helicase II [Burkholderia pseudomallei BCC215] Length = 787 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|78066057|ref|YP_368826.1| ATP-dependent DNA helicase UvrD [Burkholderia sp. 383] gi|77966802|gb|ABB08182.1| ATP-dependent DNA helicase UvrD [Burkholderia sp. 383] Length = 787 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A + P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIKQGYASPPTVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|254297873|ref|ZP_04965326.1| DNA helicase II [Burkholderia pseudomallei 406e] gi|157806965|gb|EDO84135.1| DNA helicase II [Burkholderia pseudomallei 406e] Length = 787 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|295087178|emb|CBK68701.1| ATP-dependent DNA helicase, RecQ family [Bacteroides xylanisolvens XB1A] Length = 1624 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 3/80 (3%) Query: 16 LISQTKSEQL--LASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 L Q QL ++ +R V+A GSGKT +LV ++ LLL + LL LT ++ Sbjct: 1069 LFGQLSKRQLDIISDKVSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLLMLTFSR 1128 Query: 73 AAAAEMSHRVLEIITAWSHL 92 AAA E R++E+I +H Sbjct: 1129 AAATEFKQRLMELIGNAAHF 1148 >gi|227819648|ref|YP_002823619.1| DNA helicase [Sinorhizobium fredii NGR234] gi|227338647|gb|ACP22866.1| UvrD2 DNA helicase [Sinorhizobium fredii NGR234] Length = 688 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 31/50 (62%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 A AGSGKT+ L RV L++ A P +L +T ++ AAAEM RV I + Sbjct: 35 AGAGSGKTNTLAHRVAHLIVNGADPRRILLMTFSRRAAAEMGRRVERICS 84 >gi|325955681|ref|YP_004239341.1| UvrD/REP helicase [Weeksella virosa DSM 16922] gi|323438299|gb|ADX68763.1| UvrD/REP helicase [Weeksella virosa DSM 16922] Length = 772 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + + Q Q LA + T + A AGSGKT +L R+ L+ P +L LT T Sbjct: 3 NYLEQLNEPQRLAVEATEGPVMIIAGAGSGKTRVLTYRIAHLMNKGVDPFNILSLTFTNK 62 Query: 74 AAAEMSHRVLEIITA 88 AA EM R+ ++ A Sbjct: 63 AAREMKERISSVVGA 77 >gi|282860904|ref|ZP_06269970.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. ACTE] gi|282564640|gb|EFB70176.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. ACTE] Length = 815 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL HP +L +T T AA EM RV +++ Sbjct: 90 IVAGAGSGKTRVLTHRIAHLLAERGVHPGQILAITFTNKAAGEMKERVGDLV-------- 141 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + N + V T H+ C I+++ T Sbjct: 142 -----------GPRAN-------------------AMWVMTFHSACVRILRRESKLLGFT 171 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 172 SSFSIYDAADSKRLM 186 >gi|217967779|ref|YP_002353285.1| UvrD/REP helicase [Dictyoglomus turgidum DSM 6724] gi|217336878|gb|ACK42671.1| UvrD/REP helicase [Dictyoglomus turgidum DSM 6724] Length = 625 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 65/161 (40%), Gaps = 41/161 (25%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D +++ EQL A + R + A AGSGKT ++ ++ L+ N A P ++ LT T Sbjct: 1 MDFLNELNKEQLEAVFEIERPVLILAGAGSGKTRVITYKIAYLIKNNFAKPENIVALTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAE-ITKIQGKKPNKSDMSKARHLLITILETPGG 130 AA EM R+ D +L + + K+ Sbjct: 61 NKAAEEMKRRI-----------DNLLGVKNVDKVWA------------------------ 85 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H F +++ F N+ +F I DE + LI++ Sbjct: 86 ---GTFHGFGLYLLKNFGRYWNLCPNFVIYDENDQEDLIKD 123 >gi|157377373|ref|YP_001475973.1| UvrD/REP helicase [Shewanella sediminis HAW-EB3] gi|157319747|gb|ABV38845.1| UvrD/REP helicase [Shewanella sediminis HAW-EB3] Length = 907 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Query: 21 KSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 ++EQ+ A + R V A AGSGKT +V+RV LL HPS + L +T AA+E+S Sbjct: 454 QAEQMKAVEAEARVLAVIAGAGSGKTRTIVERVKYLLGEGRHPSRIKVLAYTNDAASEIS 513 Query: 80 HRV 82 R+ Sbjct: 514 RRI 516 >gi|76811011|ref|YP_333248.1| DNA helicase II [Burkholderia pseudomallei 1710b] gi|126453724|ref|YP_001065963.1| DNA helicase II [Burkholderia pseudomallei 1106a] gi|134282378|ref|ZP_01769083.1| DNA helicase II [Burkholderia pseudomallei 305] gi|167846029|ref|ZP_02471537.1| DNA helicase II [Burkholderia pseudomallei B7210] gi|167903003|ref|ZP_02490208.1| DNA helicase II [Burkholderia pseudomallei NCTC 13177] gi|167911242|ref|ZP_02498333.1| DNA helicase II [Burkholderia pseudomallei 112] gi|217423664|ref|ZP_03455165.1| DNA helicase II [Burkholderia pseudomallei 576] gi|226192893|ref|ZP_03788505.1| DNA helicase II [Burkholderia pseudomallei Pakistan 9] gi|242316612|ref|ZP_04815628.1| DNA helicase II [Burkholderia pseudomallei 1106b] gi|254180038|ref|ZP_04886637.1| DNA helicase II [Burkholderia pseudomallei 1655] gi|254188552|ref|ZP_04895063.1| DNA helicase II [Burkholderia pseudomallei Pasteur 52237] gi|254261076|ref|ZP_04952130.1| DNA helicase II [Burkholderia pseudomallei 1710a] gi|76580464|gb|ABA49939.1| DNA helicase II [Burkholderia pseudomallei 1710b] gi|126227366|gb|ABN90906.1| DNA helicase II [Burkholderia pseudomallei 1106a] gi|134246416|gb|EBA46505.1| DNA helicase II [Burkholderia pseudomallei 305] gi|157936231|gb|EDO91901.1| DNA helicase II [Burkholderia pseudomallei Pasteur 52237] gi|184210578|gb|EDU07621.1| DNA helicase II [Burkholderia pseudomallei 1655] gi|217393522|gb|EEC33543.1| DNA helicase II [Burkholderia pseudomallei 576] gi|225934983|gb|EEH30958.1| DNA helicase II [Burkholderia pseudomallei Pakistan 9] gi|242139851|gb|EES26253.1| DNA helicase II [Burkholderia pseudomallei 1106b] gi|254219765|gb|EET09149.1| DNA helicase II [Burkholderia pseudomallei 1710a] Length = 787 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|330836710|ref|YP_004411351.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374] gi|329748613|gb|AEC01969.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374] Length = 668 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 13 TIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 + DL + EQ LA+ + A AGSGKT +L RV +L P ++L LT T Sbjct: 2 SFDLRRELNPEQYLAASTIDGPLLIIAGAGSGKTRMLTFRVAHMLENGISPHSILALTFT 61 Query: 72 KAAAAEMSHRV 82 AAAEM+ R+ Sbjct: 62 NKAAAEMAERI 72 >gi|314969858|gb|EFT13956.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA1] Length = 810 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +DL + L A P V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 43 VDLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEII 86 AAAEM RV++++ Sbjct: 100 KAAAEMKARVVDLV 113 >gi|227487771|ref|ZP_03918087.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC 51867] gi|227542414|ref|ZP_03972463.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC 51866] gi|227092273|gb|EEI27585.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC 51867] gi|227181612|gb|EEI62584.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC 51866] Length = 735 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 50/200 (25%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ LL P +L +T T AA EM RV+ +I Sbjct: 27 IVAGAGSGKTAVLTRRIAHLLRFKGVQPWQILAITFTNKAAKEMQERVIGLI-------- 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-FPLEANI 153 P +M+ V T H+ C I+++ L + Sbjct: 79 -------------GPEAQNMA-----------------VATFHSTCVRILRRNAQLVPGL 108 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL--EISNDEDIETLISDI 211 S+F I D + SK+L+++ K D + ++KK +L +IS ++ + D Sbjct: 109 NSNFTIYDSDDSKRLLQQIAK--------DMDLDIKKFSPRVLGNKISGWKNELIGVDDA 160 Query: 212 ISNRTALKLIFFFFSYLWRR 231 + + ++ F+ RR Sbjct: 161 VKEHKVIGQVYGFYQERLRR 180 >gi|311746368|ref|ZP_07720153.1| putative UvrD/REP helicase domain protein [Algoriphagus sp. PR1] gi|126575253|gb|EAZ79585.1| putative UvrD/REP helicase domain protein [Algoriphagus sp. PR1] Length = 1069 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 6/126 (4%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIIT--AWSHLSD 94 ++AGSGKT+ L L+L L + H +L +T T A EM R++E + ++ D Sbjct: 11 SSAGSGKTYTLTLEYLKLALQSPHAFKQILAVTFTNKATQEMKERIVEELKRLRFNVKPD 70 Query: 95 EILSAEITKIQGKKPNKSDMSK-ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 E + E+ + + ++S + A+ L IL G V TI +F + +++ F E ++ Sbjct: 71 EKMDREL--MNSLEVDESGLKVLAQQTLTAILHDYGRFSVSTIDSFFQKVVRAFAREIDL 128 Query: 154 TSHFAI 159 + F + Sbjct: 129 NAKFDV 134 >gi|315077282|gb|EFT49344.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL053PA2] Length = 810 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +DL + L A P V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 43 VDLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEII 86 AAAEM RV++++ Sbjct: 100 KAAAEMKARVVDLV 113 >gi|314979801|gb|EFT23895.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL072PA2] gi|315090029|gb|EFT62005.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL072PA1] Length = 810 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +DL + L A P V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 43 VDLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEII 86 AAAEM RV++++ Sbjct: 100 KAAAEMKARVVDLV 113 >gi|314963433|gb|EFT07533.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL082PA1] Length = 810 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +DL + L A P V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 43 VDLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEII 86 AAAEM RV++++ Sbjct: 100 KAAAEMKARVVDLV 113 >gi|327332323|gb|EGE74059.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL097PA1] Length = 810 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +DL + L A P V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 43 VDLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEII 86 AAAEM RV++++ Sbjct: 100 KAAAEMKARVVDLV 113 >gi|262276890|ref|ZP_06054683.1| ATP-dependent DNA helicase PcrA [alpha proteobacterium HIMB114] gi|262223993|gb|EEY74452.1| ATP-dependent DNA helicase PcrA [alpha proteobacterium HIMB114] Length = 742 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 L S ++L S+ V A AGSGKT +L R+ L+ +LC+T T A Sbjct: 5 LNSLNNQQKLAVSNTEGPLQVLAGAGSGKTKVLTSRIAYLIQQKKCFGQQILCVTFTNKA 64 Query: 75 AAEMSHRVLEIITAWS 90 A+EM RVL+++ + S Sbjct: 65 ASEMRERVLKLVNSKS 80 >gi|33319803|gb|AAQ05776.1|AF478168_1 exodeoxyribonuclease V [Borrelia hermsii] gi|37727294|gb|AAO39714.1| exodeoxynuclease V beta chain [Borrelia hermsii] Length = 1146 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 25/128 (19%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII-TAWSHLS 93 + A+AG+GKT+ L + LL+ + PS +L LT TK A EM R+L+ I A+ Sbjct: 16 IEASAGTGKTYTLENTITNLLINKMYSPSEILVLTFTKKATEEMHIRILKSIENAY---- 71 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 Q K +KS L TI E + + TI+ F + F +E Sbjct: 72 -----------QNSKTDKS--------LKTIYEQSNKIFISTINKFALYALNNFQIETEN 112 Query: 154 TSHFAIAD 161 S +++ + Sbjct: 113 FSKYSVKE 120 >gi|307128610|ref|YP_003880640.1| putative DNA helicase II [Candidatus Sulcia muelleri CARI] gi|306483072|gb|ADM89942.1| putative DNA helicase II [Candidatus Sulcia muelleri CARI] Length = 701 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 33/55 (60%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 R V A AGSGKT +L+ R++ L+ + +L LT TK +A E+ +R+ +I Sbjct: 18 RPTMVIAGAGSGKTRVLIYRLIHLIKSGVKSRNILALTFTKKSANEIKYRLSSLI 72 >gi|289167933|ref|YP_003446202.1| hypothetical protein smi_1090 [Streptococcus mitis B6] gi|288907500|emb|CBJ22337.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 1297 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 41/111 (36%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 V A G+GKT IL +RV +L N H P ++CLT+T+A A+EM R+ ++I Sbjct: 2 VIAGPGTGKTQILSRRVANIL-TNYHTSPEEIVCLTYTEAGASEMLDRLEKLIGE----- 55 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 +G+K ++V TIHAFC ++ Sbjct: 56 -----------EGRK----------------------VRVSTIHAFCSELI 73 >gi|150391860|ref|YP_001321909.1| recombination helicase AddA [Alkaliphilus metalliredigens QYMF] gi|251764495|sp|A6TVN2|ADDA_ALKMQ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|149951722|gb|ABR50250.1| Recombination helicase AddA [Alkaliphilus metalliredigens QYMF] Length = 1197 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 23/142 (16%) Query: 22 SEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMS 79 +EQ A D S +SA AGSGKT +LV+R+++++L + LL +T T AAA EM Sbjct: 6 TEQQAAIDARGSNLLISAAAGSGKTAVLVERIIQIILKDKIDIDRLLIVTFTNAAAGEMR 65 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R I A + +++ K ++ + + +LL + TIH+F Sbjct: 66 ER--------------IAGAIMEEMERKTEQEAHLRRQINLL-------NRASITTIHSF 104 Query: 140 CEAIMQQFPLEANITSHFAIAD 161 C ++++ ++ F I D Sbjct: 105 CIDVVRRHFHIIDVDPGFRIGD 126 >gi|258651495|ref|YP_003200651.1| ATP-dependent DNA helicase PcrA [Nakamurella multipartita DSM 44233] gi|258554720|gb|ACV77662.1| ATP-dependent DNA helicase PcrA [Nakamurella multipartita DSM 44233] Length = 864 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 20/114 (17%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85 V A AGSGKT +L +R+ LL + A P +L +T T AA EM RV ++ Sbjct: 56 VVAGAGSGKTRVLTRRIAYLLAVGGAQPGEILAITFTNKAAREMKDRVTDLVGGRGRSMW 115 Query: 86 ITAWSHLSDEILSAEITKIQGKKP----NKSDMSKARHLLITILETPGGLKVQT 135 ++ + + IL AE T+I K +++D + L+ GGL + T Sbjct: 116 VSTFHSMCVRILRAEATQIGLKTTFTIYDQADSQRLAQLV------AGGLNIDT 163 >gi|289424917|ref|ZP_06426696.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK187] gi|289427700|ref|ZP_06429412.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J165] gi|295131282|ref|YP_003581945.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK137] gi|289154616|gb|EFD03302.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK187] gi|289159191|gb|EFD07383.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J165] gi|291375534|gb|ADD99388.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK137] gi|313763127|gb|EFS34491.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL013PA1] gi|313773164|gb|EFS39130.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL074PA1] gi|313793367|gb|EFS41425.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA1] gi|313800989|gb|EFS42257.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA2] gi|313808729|gb|EFS47183.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA2] gi|313810354|gb|EFS48068.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL083PA1] gi|313816467|gb|EFS54181.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL059PA1] gi|313819821|gb|EFS57535.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA1] gi|313823311|gb|EFS61025.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA2] gi|313824786|gb|EFS62500.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL063PA1] gi|313828273|gb|EFS65987.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL063PA2] gi|313830207|gb|EFS67921.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL007PA1] gi|313832960|gb|EFS70674.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL056PA1] gi|313838057|gb|EFS75771.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL086PA1] gi|314917767|gb|EFS81598.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA1] gi|314919507|gb|EFS83338.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA3] gi|314925815|gb|EFS89646.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA3] gi|314930099|gb|EFS93930.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL067PA1] gi|314957100|gb|EFT01205.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL027PA1] gi|314957690|gb|EFT01793.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA1] gi|314960758|gb|EFT04859.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA2] gi|314972985|gb|EFT17081.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL053PA1] gi|314975621|gb|EFT19716.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL045PA1] gi|314984812|gb|EFT28904.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA1] gi|314986165|gb|EFT30257.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA2] gi|314988777|gb|EFT32868.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA3] gi|315079961|gb|EFT51937.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL078PA1] gi|315083289|gb|EFT55265.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL027PA2] gi|315086938|gb|EFT58914.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA3] gi|315096648|gb|EFT68624.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL038PA1] gi|315097877|gb|EFT69853.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL059PA2] gi|315100641|gb|EFT72617.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL046PA1] gi|315109268|gb|EFT81244.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL030PA2] gi|327325064|gb|EGE66870.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL096PA3] gi|327325309|gb|EGE67114.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL096PA2] gi|327443823|gb|EGE90477.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL043PA1] gi|327449135|gb|EGE95789.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL043PA2] gi|327449263|gb|EGE95917.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL013PA2] gi|327451317|gb|EGE97971.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA3] gi|327451706|gb|EGE98360.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL092PA1] gi|328752262|gb|EGF65878.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA1] gi|328755353|gb|EGF68969.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL025PA2] gi|328756392|gb|EGF70008.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL020PA1] gi|328761099|gb|EGF74648.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL099PA1] Length = 810 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +DL + L A P V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 43 VDLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEII 86 AAAEM RV++++ Sbjct: 100 KAAAEMKARVVDLV 113 >gi|89256059|ref|YP_513421.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp. holarctica LVS] gi|167009877|ref|ZP_02274808.1| Exodeoxyribonuclease V beta chain [Francisella tularensis subsp. holarctica FSC200] gi|89143890|emb|CAJ79108.1| Exodeoxyribonuclease V beta chain [Francisella tularensis subsp. holarctica LVS] Length = 1217 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 16/113 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLS 93 + A+AG+GKT + + +RLLL PS +L +T TK A E+ RV EI + + Sbjct: 17 IEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIRDVLASYT 76 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 DE +SD +HL ++LE + TIH FC+ ++ + Sbjct: 77 DE-------------KKESDKENYKHLKRSLLEIDEA-AIFTIHGFCKKVLSE 115 >gi|33440279|ref|ZP_00141864.1| COG0210: Superfamily I DNA and RNA helicases [Pasteuria nishizawae str. North American] Length = 160 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 11/84 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA-----W 89 V A AGSGKT +L RV ++ + A P ++LC+T T AA EM HR+ +++ W Sbjct: 35 VMAGAGSGKTRVLTYRVGHIVASQLAKPWSVLCITFTNKAATEMRHRIHALLSGQTTGVW 94 Query: 90 SH----LSDEILSAEITKIQGKKP 109 H L IL +I + G P Sbjct: 95 VHTFHGLCARILRTDIQHL-GYDP 117 >gi|56708443|ref|YP_170339.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp. tularensis SCHU S4] gi|110670914|ref|YP_667471.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp. tularensis FSC198] gi|254371067|ref|ZP_04987069.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|56604935|emb|CAG46027.1| Exodeoxyribonuclease V beta chain [Francisella tularensis subsp. tularensis SCHU S4] gi|110321247|emb|CAL09410.1| Exodeoxyribonuclease V beta chain [Francisella tularensis subsp. tularensis FSC198] gi|151569307|gb|EDN34961.1| hypothetical protein FTBG_00823 [Francisella tularensis subsp. tularensis FSC033] gi|282159635|gb|ADA79026.1| Exodeoxyribonuclease V beta chain [Francisella tularensis subsp. tularensis NE061598] Length = 1217 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 16/120 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLS 93 + A+AG+GKT + + +RLLL PS +L +T TK A E+ RV EI + + Sbjct: 17 IEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIRDVLASYT 76 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 DE +SD +HL ++LE + TIH FC+ ++ + + I Sbjct: 77 DE-------------KKESDKENYKHLKRSLLEIDEA-AIFTIHGFCKKVLSEQAFASGI 122 >gi|126441559|ref|YP_001058711.1| DNA helicase II [Burkholderia pseudomallei 668] gi|126221052|gb|ABN84558.1| DNA helicase II [Burkholderia pseudomallei 668] Length = 787 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|53725443|ref|YP_102655.1| DNA helicase II [Burkholderia mallei ATCC 23344] gi|67642678|ref|ZP_00441431.1| DNA helicase II [Burkholderia mallei GB8 horse 4] gi|121601559|ref|YP_992792.1| DNA helicase II [Burkholderia mallei SAVP1] gi|124385882|ref|YP_001026420.1| DNA helicase II [Burkholderia mallei NCTC 10229] gi|126449241|ref|YP_001080308.1| DNA helicase II [Burkholderia mallei NCTC 10247] gi|167001551|ref|ZP_02267346.1| DNA helicase II [Burkholderia mallei PRL-20] gi|254178093|ref|ZP_04884748.1| DNA helicase II [Burkholderia mallei ATCC 10399] gi|254199592|ref|ZP_04905958.1| DNA helicase II [Burkholderia mallei FMH] gi|254205910|ref|ZP_04912262.1| DNA helicase II [Burkholderia mallei JHU] gi|254358690|ref|ZP_04974963.1| DNA helicase II [Burkholderia mallei 2002721280] gi|52428866|gb|AAU49459.1| DNA helicase II [Burkholderia mallei ATCC 23344] gi|121230369|gb|ABM52887.1| DNA helicase II [Burkholderia mallei SAVP1] gi|124293902|gb|ABN03171.1| DNA helicase II [Burkholderia mallei NCTC 10229] gi|126242111|gb|ABO05204.1| DNA helicase II [Burkholderia mallei NCTC 10247] gi|147749188|gb|EDK56262.1| DNA helicase II [Burkholderia mallei FMH] gi|147753353|gb|EDK60418.1| DNA helicase II [Burkholderia mallei JHU] gi|148027817|gb|EDK85838.1| DNA helicase II [Burkholderia mallei 2002721280] gi|160699132|gb|EDP89102.1| DNA helicase II [Burkholderia mallei ATCC 10399] gi|238523865|gb|EEP87301.1| DNA helicase II [Burkholderia mallei GB8 horse 4] gi|243062656|gb|EES44842.1| DNA helicase II [Burkholderia mallei PRL-20] Length = 787 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|327451777|gb|EGE98431.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL083PA2] Length = 810 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +DL + L A P V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 43 VDLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEII 86 AAAEM RV++++ Sbjct: 100 KAAAEMKARVVDLV 113 >gi|313817909|gb|EFS55623.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL046PA2] Length = 810 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +DL + L A P V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 43 VDLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEII 86 AAAEM RV++++ Sbjct: 100 KAAAEMKARVVDLV 113 >gi|310659214|ref|YP_003936935.1| helicase, uvrd/rep/exonuclease family protein [Clostridium sticklandii DSM 519] gi|308825992|emb|CBH22030.1| putative Helicase, UvrD/REP/exonuclease family protein [Clostridium sticklandii] Length = 828 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 39/159 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 + I + EQ A D V A AG+GKT ++ R ++ P +L LT T Sbjct: 4 VKYIERLNKEQKTAYDKVFGPLIVMAPAGTGKTDVIALRAYNAYISGVKPEDMLLLTFTN 63 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA M R LEI+ G NK ++ Sbjct: 64 RAAKSMKKR-LEIVI------------------GDIANK-------------------IR 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 + T H C I++Q + ++ F + DE+ S+++I + Sbjct: 86 ISTFHGLCGFILRQEAVNLFLSPDFIVIDEDDSRQIIRD 124 >gi|303247358|ref|ZP_07333631.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ] gi|302491272|gb|EFL51161.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ] Length = 725 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 39/188 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT +V R+ L+ P+ +L LT T+ AA EM R ++ Sbjct: 24 VIAGAGSGKTRTIVYRLAHLVSDGVDPAAILLLTFTRKAAQEMLTRAGMLLA-------- 75 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + + + + G T HAF A ++++ A Sbjct: 76 MGPSGVASVSGG---------------------------TFHAFAFATLRRYHAAAGFPD 108 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215 F + D+ S+ ++ +A K TL D + K A +L + +++++ + D++S R Sbjct: 109 GFTVLDQADSEDILGQA-KDTLGIGKGDRSFPRKSAVLGLLSKARNKELD--VGDVLS-R 164 Query: 216 TALKLIFF 223 A L+ + Sbjct: 165 EAFHLLPY 172 >gi|254368883|ref|ZP_04984896.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp. holarctica FSC022] gi|157121804|gb|EDO65974.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp. holarctica FSC022] Length = 1217 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 16/113 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLS 93 + A+AG+GKT + + +RLLL PS +L +T TK A E+ RV EI + + Sbjct: 17 IEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIRDVLASYT 76 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 DE +SD +HL ++LE + TIH FC+ ++ + Sbjct: 77 DE-------------KKESDKENYKHLKRSLLEIDEA-AIFTIHGFCKKVLSE 115 >gi|115314538|ref|YP_763261.1| exodeoxyribonuclease V [Francisella tularensis subsp. holarctica OSU18] gi|156502071|ref|YP_001428136.1| exodeoxyribonuclease V, subunit beta [Francisella tularensis subsp. holarctica FTNF002-00] gi|290954227|ref|ZP_06558848.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp. holarctica URFT1] gi|295312347|ref|ZP_06803132.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp. holarctica URFT1] gi|115129437|gb|ABI82624.1| exodeoxyribonuclease V [Francisella tularensis subsp. holarctica OSU18] gi|156252674|gb|ABU61180.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp. holarctica FTNF002-00] Length = 1217 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 16/113 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLS 93 + A+AG+GKT + + +RLLL PS +L +T TK A E+ RV EI + + Sbjct: 17 IEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIRDVLASYT 76 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 DE +SD +HL ++LE + TIH FC+ ++ + Sbjct: 77 DE-------------KKESDKENYKHLKRSLLEIDEA-AIFTIHGFCKKVLSE 115 >gi|323701383|ref|ZP_08113057.1| recombination helicase AddA [Desulfotomaculum nigrificans DSM 574] gi|323533642|gb|EGB23507.1| recombination helicase AddA [Desulfotomaculum nigrificans DSM 574] Length = 1243 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 26/144 (18%) Query: 23 EQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEM 78 EQL A + R+ V+A AG+GKT +LV+R++R++ +P LL +T T AAAAEM Sbjct: 9 EQLAAIETRGRNLLVAAAAGAGKTAVLVERIIRMITDPVNPVEIDKLLVVTFTNAAAAEM 68 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ ++K P +S+ LL + T+H+ Sbjct: 69 RERI---------------GLALSKALNANPRSGHLSRQLALL-------NRASITTLHS 106 Query: 139 FCEAIMQQFPLEANITSHFAIADE 162 FC +++++ + ++ F +ADE Sbjct: 107 FCLDLLRRYFYQLDLDPSFRVADE 130 >gi|167570197|ref|ZP_02363071.1| DNA helicase II [Burkholderia oklahomensis C6786] Length = 786 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 DL++ EQL A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|167563007|ref|ZP_02355923.1| DNA helicase II [Burkholderia oklahomensis EO147] Length = 786 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 DL++ EQL A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|159186244|ref|NP_356043.2| ATP-dependent DNA helicase [Agrobacterium tumefaciens str. C58] gi|159141378|gb|AAK88828.2| ATP-dependent DNA helicase [Agrobacterium tumefaciens str. C58] Length = 688 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 31/48 (64%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 A AGSGKT+ L RV L++ A P +L +T ++ AA+EMS RV I Sbjct: 36 AGAGSGKTNTLAHRVAHLIVNGADPRRILLMTFSRRAASEMSRRVERI 83 >gi|325273939|ref|ZP_08140102.1| DNA-dependent helicase II [Pseudomonas sp. TJI-51] gi|324100910|gb|EGB98593.1| DNA-dependent helicase II [Pseudomonas sp. TJI-51] Length = 728 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM R+ +++ Sbjct: 30 VLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQLLGI------ 83 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P G+ V T H +++ EA + Sbjct: 84 --------------------------------NPAGMWVGTFHGLAHRLLRAHWQEARLV 111 Query: 155 SHFAIADEEQSKKLIEEAKK 174 +F I D + ++LI+ + Sbjct: 112 QNFQILDSDDQQRLIKRVMR 131 >gi|314914443|gb|EFS78274.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA4] Length = 810 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +DL + L A P V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 43 VDLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEII 86 AAAEM RV++++ Sbjct: 100 KAAAEMKARVVDLV 113 >gi|163815442|ref|ZP_02206815.1| hypothetical protein COPEUT_01605 [Coprococcus eutactus ATCC 27759] gi|158449079|gb|EDP26074.1| hypothetical protein COPEUT_01605 [Coprococcus eutactus ATCC 27759] Length = 1303 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 30/181 (16%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-----ANAHPST------- 64 IS TK + + + V+A AGSGKT +LV+R++ ++L N P Sbjct: 6 ISWTKQQAHVIDTRIGNLLVAAAAGSGKTAVLVERIIEMVLGVDSNGNKLPDQDRVNVDE 65 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 LL +T T AAAA+M + I A DE ++ I LI Sbjct: 66 LLVVTFTNAAAAQMKEK---ISAALQKKIDEYMANGIYDEH---------------LIKQ 107 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 + ++ TI +FC I++++ + + S F IAD+ + + + ++ + S D Sbjct: 108 MTLINHAEICTIDSFCLHIVKEYFAKVQLDSAFDIADKTEMEIIKKDVMDKVMESCYQDE 167 Query: 185 N 185 N Sbjct: 168 N 168 >gi|187918490|ref|YP_001884053.1| exodeoxyribonuclease V beta chain [Borrelia hermsii DAH] gi|119861338|gb|AAX17133.1| exodeoxyribonuclease V beta chain [Borrelia hermsii DAH] Length = 1157 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 36/169 (21%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII-TAWSHLS 93 + A+AG+GKT+ L + LL+ + PS +L LT TK A EM R+L+ I A+ Sbjct: 27 IEASAGTGKTYTLENTITNLLINKMYSPSEILVLTFTKKATEEMHIRILKSIENAY---- 82 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 Q K +KS L TI E + + TI+ F + F +E Sbjct: 83 -----------QNSKTDKS--------LKTIYEQSNKIFISTINKFALYALNNFQIETEN 123 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 S +++ + S+ I+E + L ++ LKK F EI +DE Sbjct: 124 FSKYSVKENFTSE--IDE-----IVYEFLRKSDSLKKEF----EIKDDE 161 >gi|53719591|ref|YP_108577.1| putative helicase [Burkholderia pseudomallei K96243] gi|52210005|emb|CAH35978.1| putative helicase [Burkholderia pseudomallei K96243] Length = 787 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|313812190|gb|EFS49904.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL025PA1] Length = 810 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +DL + L A P V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 43 VDLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEII 86 AAAEM RV++++ Sbjct: 100 KAAAEMKARVVDLV 113 >gi|225023085|ref|ZP_03712277.1| hypothetical protein CORMATOL_03133 [Corynebacterium matruchotii ATCC 33806] gi|224944308|gb|EEG25517.1| hypothetical protein CORMATOL_03133 [Corynebacterium matruchotii ATCC 33806] Length = 894 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 41/158 (25%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DLI+ +Q A + + S + A AGSGKT +L +R+ LL + P +L +T T Sbjct: 94 DLIADLNPQQRAAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLLRMRGVAPGQILAITFTN 153 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV++++ P + M Sbjct: 154 KAAAEMRDRVIDLV---------------------GPTATRMW----------------- 175 Query: 133 VQTIHAFCEAIM-QQFPLEANITSHFAIADEEQSKKLI 169 V T H+ C I+ +Q L + ++F I D + SK+L+ Sbjct: 176 VATFHSACVRILREQAHLLPGLNTNFTIYDADDSKRLL 213 >gi|170759836|ref|YP_001785776.1| recombination helicase AddA [Clostridium botulinum A3 str. Loch Maree] gi|251764515|sp|B1KUZ8|ADDA_CLOBM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|169406825|gb|ACA55236.1| ATP-dependent nuclease subunit A [Clostridium botulinum A3 str. Loch Maree] Length = 1279 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 33/156 (21%) Query: 28 SDPTRSAWVSANAG--------SGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 +D R A + N +GKT +LVQR++ +L P LL +T T AAAA Sbjct: 7 TDEQRQAVFTKNCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAAA 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ + I+ K +++ SKA +T+L + TI Sbjct: 67 EMRERIGDAIS-------------------KGLDENPESKALRKQLTLLNKSN---IMTI 104 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 H+FC I++ I +F I DE + + +EA Sbjct: 105 HSFCLQIIKNNFHTIEIDPNFRICDETEGILMKQEA 140 >gi|321310205|ref|YP_004192534.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str. Langford 1] gi|319802049|emb|CBY92695.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str. Langford 1] Length = 693 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKA 73 DL + + ++L P + V A AG+GKT +L +R L+ N P +L +T TK Sbjct: 10 DLSNLNEQQRLAVLSPLKPILVVAGAGTGKTTVLTKRFEYLVRDCNIDPRNILVITFTKK 69 Query: 74 AAAEMSHRV 82 AA EM R+ Sbjct: 70 AATEMKRRI 78 >gi|300932549|ref|ZP_07147805.1| putative ATP-dependent DNA helicase II [Corynebacterium resistens DSM 45100] Length = 864 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A AGSGKT +L +R+ LL P +L +T T AA EM RV++++ Sbjct: 70 IVAGAGSGKTSVLTRRIAHLLQTGVAPWQVLAITFTNKAAGEMRERVVDLV--------- 120 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANIT 154 G + K + V T H+ C I++ L + Sbjct: 121 ----------GPQAEK-------------------MWVSTFHSMCVRILRANANLVPGLN 151 Query: 155 SHFAIADEEQSKKLI 169 ++F I D + SK+LI Sbjct: 152 TNFTIYDSDDSKRLI 166 >gi|224372826|ref|YP_002607198.1| ATP-dependent helicase [Nautilia profundicola AmH] gi|223588787|gb|ACM92523.1| ATP-dependent helicase [Nautilia profundicola AmH] Length = 675 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Query: 17 ISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S+ EQL A+ P V A+AG+GKT +V R+ LL P +L LT T AA Sbjct: 3 LSRLNKEQLQAATAPLGHNLVIASAGTGKTSTIVGRIAYLLEEGIKPEEILLLTFTNKAA 62 Query: 76 AEMSHRVLEIITAWSHL 92 EM RV ++ + ++ Sbjct: 63 QEMKERVAGVLPSARNI 79 >gi|315635996|ref|ZP_07891256.1| conserved hypothetical protein [Arcobacter butzleri JV22] gi|315479717|gb|EFU70390.1| conserved hypothetical protein [Arcobacter butzleri JV22] Length = 182 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Query: 6 SFQEHSETIDL-ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPS 63 +F+ H I + +S EQL A+ + + A+AG+GKT +V R+ LL + +P Sbjct: 9 TFKTHKRIIFMPLSNLNQEQLQAATCHQGFNLIIASAGTGKTSTIVGRIAYLLNSGINPK 68 Query: 64 TLLCLTHTKAAAAEMSHRV 82 +L LT T AAAEM +RV Sbjct: 69 EILLLTFTNKAAAEMINRV 87 >gi|254373289|ref|ZP_04988777.1| exodeoxyribonuclease V beta chain [Francisella tularensis subsp. novicida GA99-3549] gi|151571015|gb|EDN36669.1| exodeoxyribonuclease V beta chain [Francisella novicida GA99-3549] Length = 1216 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 16/113 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLS 93 + A+AG+GKT + + +RLLL PS +L +T TK A E+ RV EI + + Sbjct: 17 IEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIRDVLASYT 76 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 DE +SD +HL ++LE + TIH FC+ ++ + Sbjct: 77 DE-------------KKESDKENYKHLKRSLLEIDEA-AIFTIHGFCKKVLSE 115 >gi|308189989|ref|YP_003922920.1| ATP-dependent DNA helicase [Mycoplasma fermentans JER] gi|307624731|gb|ADN69036.1| ATP-dependent DNA helicase [Mycoplasma fermentans JER] Length = 723 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 43/169 (25%) Query: 9 EHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66 + E ++ ++ + E L+ D P R + A AGSGKT +L ++V L+ P ++L Sbjct: 3 KRDEILNSLNAEQKEALMYFDGPLR---IIAGAGSGKTRVLTRKVAYLINELGISPRSIL 59 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EMS RV + + G++ N+ D+ Sbjct: 60 AVTFTNKAANEMSERVKQYV-------------------GEEANQIDIC----------- 89 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ I+++ + N+++ F I DE K +I + K+ Sbjct: 90 --------TFHSLSSKILRKEAIHVNLSNDFQIIDETDKKTIIAQLYKA 130 >gi|26992028|ref|NP_747453.1| DNA-dependent helicase II [Pseudomonas putida KT2440] gi|24987163|gb|AAN70917.1|AE016735_10 DNA helicase II [Pseudomonas putida KT2440] Length = 728 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM R+ +++ Sbjct: 30 VLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQLLGI------ 83 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P G+ V T H +++ EA + Sbjct: 84 --------------------------------NPAGMWVGTFHGLAHRLLRAHWQEARLV 111 Query: 155 SHFAIADEEQSKKLIEEAKK 174 +F I D + ++LI+ + Sbjct: 112 QNFQILDSDDQQRLIKRVMR 131 >gi|148550460|ref|YP_001270562.1| DNA-dependent helicase II [Pseudomonas putida F1] gi|148514518|gb|ABQ81378.1| ATP-dependent DNA helicase UvrD [Pseudomonas putida F1] gi|313496365|gb|ADR57731.1| UvrD [Pseudomonas putida BIRD-1] Length = 728 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM R+ +++ Sbjct: 30 VLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQLLGI------ 83 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P G+ V T H +++ EA + Sbjct: 84 --------------------------------NPAGMWVGTFHGLAHRLLRAHWQEARLV 111 Query: 155 SHFAIADEEQSKKLIEEAKK 174 +F I D + ++LI+ + Sbjct: 112 QNFQILDSDDQQRLIKRVMR 131 >gi|258545647|ref|ZP_05705881.1| ATP-dependent helicase PcrA [Cardiobacterium hominis ATCC 15826] gi|258519114|gb|EEV87973.1| ATP-dependent helicase PcrA [Cardiobacterium hominis ATCC 15826] Length = 723 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 43/167 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE + +++ + E + + P R+ V A AGSGKT +LVQR+ L+ + P LL LT Sbjct: 4 SEILQGLNERQREAV--THPARAMRVIAGAGSGKTRVLVQRMQWLMAVEGVSPYGLLALT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP- 128 T AA EM R L L+ P Sbjct: 62 FTNKAAREMRQR---------------------------------------LEAALQRPL 82 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G L + T H C I+++ L F I D + +L++ ++ Sbjct: 83 GQLWMGTFHGICHRILRRHALLMQWPEQFVIMDSDDQLRLVKRMMRA 129 >gi|81299966|ref|YP_400174.1| hypothetical protein Synpcc7942_1157 [Synechococcus elongatus PCC 7942] gi|23957809|gb|AAN40822.1| unknown [Synechococcus elongatus PCC 7942] gi|81168847|gb|ABB57187.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 1061 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 40/202 (19%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMS 79 EQ A S V+A AG+GKT +L QR L L + P ++ LT T+ AAAE+ Sbjct: 6 EQRQAVQAAGSVAVTAGAGTGKTELLSQRYLWHLQQASESVSPLEIVVLTFTEKAAAELR 65 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + + K P++SD L ++ T H+ Sbjct: 66 SRIRK------------------AVGNKWPDRSDW----------LAEVEAAQISTFHSL 97 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C I ++ P A + F I D+ K +++ L + M +EL + +++++ S Sbjct: 98 CARICREHPAAAGQPADFTILDDLAGKLW----QQTVLTAAM----QELDPSCFDVMDYS 149 Query: 200 NDED-IETLISDIISNRTALKL 220 +ETL+ D + ++ L + Sbjct: 150 EWRSLLETLLDDPVRSQALLAV 171 >gi|238809942|dbj|BAH69732.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 723 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 43/169 (25%) Query: 9 EHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66 + E ++ ++ + E L+ D P R + A AGSGKT +L ++V L+ P ++L Sbjct: 3 KRDEILNSLNAEQKEALMYFDGPLR---IIAGAGSGKTRVLTRKVAYLINELGISPRSIL 59 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EMS RV + + G++ N+ D+ Sbjct: 60 AVTFTNKAANEMSERVKQYV-------------------GEEANQIDIC----------- 89 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ I+++ + N+++ F I DE K +I + K+ Sbjct: 90 --------TFHSLSSKILRKEAIHVNLSNDFQIIDETDKKTIIAQLYKA 130 >gi|325062285|gb|ADY65975.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3] Length = 688 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 31/48 (64%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 A AGSGKT+ L RV L++ A P +L +T ++ AA+EMS RV I Sbjct: 36 AGAGSGKTNTLAHRVAHLIVNGADPRRILLMTFSRRAASEMSRRVERI 83 >gi|313903519|ref|ZP_07836910.1| ATP-dependent DNA helicase PcrA [Thermaerobacter subterraneus DSM 13965] gi|313466340|gb|EFR61863.1| ATP-dependent DNA helicase PcrA [Thermaerobacter subterraneus DSM 13965] Length = 791 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 DL++ Q A + P V A AGSGKT +L +RV LL P +L +T T Sbjct: 3 DLLADLNPAQREAVTHPGGPVLVLAGAGSGKTRVLTRRVAYLLEQGVAPHQILAITFTNK 62 Query: 74 AAAEMSHRVLEIITA 88 AA EM RV +++ A Sbjct: 63 AAREMRERVEQLVGA 77 >gi|309799179|ref|ZP_07693429.1| DNA-dependent ATPase I and helicase II [Streptococcus infantis SK1302] gi|308117196|gb|EFO54622.1| DNA-dependent ATPase I and helicase II [Streptococcus infantis SK1302] Length = 338 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 3/53 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86 V A G+GKT IL +RV +L N H P ++CLT+T+A A+EM R+ +I Sbjct: 34 VIAGPGTGKTQILSRRVANIL-TNYHTNPEEIVCLTYTEAGASEMLDRLEGLI 85 >gi|134301565|ref|YP_001121533.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|134049342|gb|ABO46413.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp. tularensis WY96-3418] Length = 1217 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 16/113 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLS 93 + A+AG+GKT + + +RLLL PS +L +T TK A E+ RV EI + + Sbjct: 17 IEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIRDVLASYT 76 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 DE +SD +HL ++LE + TIH FC+ ++ + Sbjct: 77 DE-------------KKESDKENYKHLKRSLLEIDEA-AIFTIHGFCKKVLSE 115 >gi|167036387|ref|YP_001671618.1| DNA-dependent helicase II [Pseudomonas putida GB-1] gi|166862875|gb|ABZ01283.1| UvrD/REP helicase [Pseudomonas putida GB-1] Length = 728 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM R+ +++ Sbjct: 30 VLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQLLGI------ 83 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P G+ V T H +++ EA + Sbjct: 84 --------------------------------NPAGMWVGTFHGLAHRLLRAHWQEARLV 111 Query: 155 SHFAIADEEQSKKLIEEAKK 174 +F I D + ++LI+ + Sbjct: 112 QNFQILDSDDQQRLIKRVMR 131 >gi|323139146|ref|ZP_08074203.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242] gi|322395617|gb|EFX98161.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242] Length = 718 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 32/50 (64%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT+ L RV L++ A P +L +T ++ AAAEM+ RV I Sbjct: 63 VIAGAGSGKTNTLAHRVAHLIVNGADPRRILLMTFSRRAAAEMTRRVERI 112 >gi|208779656|ref|ZP_03247001.1| exodeoxyribonuclease V, beta subunit [Francisella novicida FTG] gi|208744617|gb|EDZ90916.1| exodeoxyribonuclease V, beta subunit [Francisella novicida FTG] Length = 1216 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 16/113 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLS 93 + A+AG+GKT + + +RLLL PS +L +T TK A E+ RV EI + + Sbjct: 17 IEASAGTGKTFNITKLYIRLLLEKKILPSNILVMTFTKDATQEIIGRVEKEIRDVLASYT 76 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 DE +SD +HL ++LE + TIH FC+ ++ + Sbjct: 77 DE-------------KKESDKENYKHLKRSLLEIDEA-AIFTIHGFCKKVLSE 115 >gi|187931411|ref|YP_001891395.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|187712320|gb|ACD30617.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 1217 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 16/113 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLS 93 + A+AG+GKT + + +RLLL PS +L +T TK A E+ RV EI + + Sbjct: 17 IEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIRDVLASYT 76 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 DE +SD +HL ++LE + TIH FC+ ++ + Sbjct: 77 DE-------------KKESDKENYKHLKRSLLEIDEA-AIFTIHGFCKKVLSE 115 >gi|223983369|ref|ZP_03633555.1| hypothetical protein HOLDEFILI_00835 [Holdemania filiformis DSM 12042] gi|223964541|gb|EEF68867.1| hypothetical protein HOLDEFILI_00835 [Holdemania filiformis DSM 12042] Length = 1076 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 21/112 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 VSA+AG+GKT +LV R+++ +L + H S ++ +T T+AAA+EM R+L+ L+ Sbjct: 22 VSASAGAGKTTVLVARLMKRMLED-HISIDRIVAMTFTEAAASEMKKRLLQ------SLN 74 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 D K+Q ++++ R LI + + TIH+FC +I++ Sbjct: 75 D--------KLQEPDLDEAEAQYCRQQLILL----QSAHISTIHSFCLSIIK 114 >gi|319777271|ref|YP_004136922.1| ATP-dependent DNA helicase [Mycoplasma fermentans M64] gi|318038346|gb|ADV34545.1| ATP-dependent DNA helicase [Mycoplasma fermentans M64] Length = 723 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 43/169 (25%) Query: 9 EHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66 + E ++ ++ + E L+ D P R + A AGSGKT +L ++V L+ P ++L Sbjct: 3 KRDEILNSLNAEQKEALMYFDGPLR---IIAGAGSGKTRVLTRKVAYLINELGISPRSIL 59 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EMS RV + + G++ N+ D+ Sbjct: 60 AVTFTNKAANEMSERVKQYV-------------------GEEANQIDIC----------- 89 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ I+++ + N+++ F I DE K +I + K+ Sbjct: 90 --------TFHSLSSKILRKEAIHVNLSNDFQIIDETDKKTIIAQLYKA 130 >gi|229825742|ref|ZP_04451811.1| hypothetical protein GCWU000182_01105 [Abiotrophia defectiva ATCC 49176] gi|229790305|gb|EEP26419.1| hypothetical protein GCWU000182_01105 [Abiotrophia defectiva ATCC 49176] Length = 1183 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 3/50 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV 82 VSA AGSGKT +L++RV+ LL P LL +T T+ AA EM R+ Sbjct: 22 VSAAAGSGKTAVLIERVMGRLLDERAPINIDELLVVTFTRDAAGEMKERI 71 >gi|210623345|ref|ZP_03293743.1| hypothetical protein CLOHIR_01693 [Clostridium hiranonis DSM 13275] gi|210153655|gb|EEA84661.1| hypothetical protein CLOHIR_01693 [Clostridium hiranonis DSM 13275] Length = 755 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 28/49 (57%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ L+ P+ +L +T T AA EM RV E + Sbjct: 25 AGAGSGKTRVLTTRIAHLIDKGVQPANILAITFTNKAANEMRERVEETV 73 >gi|150020672|ref|YP_001306026.1| UvrD/REP helicase [Thermosipho melanesiensis BI429] gi|149793193|gb|ABR30641.1| UvrD/REP helicase [Thermosipho melanesiensis BI429] Length = 630 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 38/138 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A GSGKT ++ ++ L+ + P+ ++ +T TKAAA EM R Sbjct: 26 VIAGPGSGKTRVITYKIAHLIDSGIKPNEIMLVTFTKAAAREMLQR-------------- 71 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 K +KS+++ G+ T H C ++++ + S Sbjct: 72 ----------AKVVSKSNLN--------------GITAGTFHHVCNLFLRRYGRLIGLKS 107 Query: 156 HFAIADEEQSKKLIEEAK 173 +F I D E +K L+E + Sbjct: 108 NFTILDSEDAKDLMESTR 125 >gi|320327008|gb|EFW83024.1| hypothetical protein PsgRace4_26815 [Pseudomonas syringae pv. glycinea str. race 4] Length = 633 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 D ++ +S AGSGKT+ LVQ +R +LA T+ C+T+T AA AE+ R+ Sbjct: 20 DQGKNFLLSGGAGSGKTYSLVQ-FIRQVLAEDPKKTIACITYTNAAVAEIRGRI 72 >gi|311107647|ref|YP_003980500.1| UvrD/Rep helicase family protein 1 [Achromobacter xylosoxidans A8] gi|310762336|gb|ADP17785.1| UvrD/Rep helicase family protein 1 [Achromobacter xylosoxidans A8] Length = 707 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 31/51 (60%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT+ L RV L+L A P +L LT ++ AA EM RV ++ Sbjct: 51 VIAGAGSGKTNTLAHRVAHLILNGADPQRMLLLTFSRRAALEMERRVGSVL 101 >gi|300813620|ref|ZP_07093948.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512256|gb|EFK39428.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 229 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 37/151 (24%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 + AG+GKT +L QR + ++ A N +L LT T A EM++R+ + S+ Sbjct: 22 SGAGTGKTGVLTQRFINIIKAQNGKFDNILALTFTDKATEEMNNRIYHELAKTSY----- 76 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 I K L + TIH+FC+ ++ + +I S+ Sbjct: 77 -DFNIDK---------------------------LNIMTIHSFCKDLILSYNRYLHINSN 108 Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 F + ++ + L++E+ K L++ NNE+ Sbjct: 109 FDLDNDFFCQILLKESIKKILSTY---NNED 136 >gi|281423244|ref|ZP_06254157.1| putative UvrD/REP helicase domain protein [Prevotella oris F0302] gi|281402580|gb|EFB33411.1| putative UvrD/REP helicase domain protein [Prevotella oris F0302] Length = 1075 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 8/148 (5%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95 A+AGSGKT L + ++LL+ N H L +T T A EM R+L + S L + Sbjct: 9 ASAGSGKTFTLAVQYIKLLVENPHAYRHTLAVTFTNKATEEMKMRILSQLYGISRGLKES 68 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 E K Q + ++ A + L ++ +V+TI AF + +++ E +T+ Sbjct: 69 KPYLESVKQQTSLDETTIINNASYALSELIHNYSYFRVETIDAFFQTVLRNLARELELTA 128 Query: 156 HFAIADEEQS------KKLIEEAKKSTL 177 + I +Q +LIE S+L Sbjct: 129 NLRIELNDQQVEQQAVDQLIENLDASSL 156 >gi|148378439|ref|YP_001252980.1| recombination helicase AddA [Clostridium botulinum A str. ATCC 3502] gi|251764512|sp|A5HYY0|ADDA_CLOBH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|148287923|emb|CAL81989.1| ATP-dependent nuclease subunit A [Clostridium botulinum A str. ATCC 3502] Length = 1279 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 25/132 (18%) Query: 44 KTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100 KT +LVQR++ +L P LL +T T AAAAEM R+ + I S DE ++ Sbjct: 31 KTAVLVQRIIEKILDKGEPIDIDKLLVVTFTNAAAAEMRERIGDAI---SKGLDEDPESK 87 Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160 + + Q NKS+ + TIH+FC +++ I +F I Sbjct: 88 VLRKQLTLLNKSN-------------------IMTIHSFCLQVIKNNFHTMEIDPNFRIC 128 Query: 161 DEEQSKKLIEEA 172 DE + + +EA Sbjct: 129 DETEGILMKQEA 140 >gi|144575164|gb|AAZ43952.2| atp-dependent helicase [Mycoplasma synoviae 53] Length = 734 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 37/135 (27%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AG+GKT +L +++L L+L PS +L +T T AA EM R+ Sbjct: 32 AGAGTGKTKVLTRKILYLILEKKVDPSKILAVTFTNKAAKEMKDRI-------------- 77 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 N K + L + T+H+FC +++++ + + Sbjct: 78 -------------NSKYYDKQKVLFENVF---------TLHSFCAQVLRKYINLIGFSRN 115 Query: 157 FAIADEEQSKKLIEE 171 F I DE K+++++ Sbjct: 116 FPILDELDKKQVLQD 130 >gi|118497936|ref|YP_898986.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Francisella tularensis subsp. novicida U112] gi|194323158|ref|ZP_03056942.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp. novicida FTE] gi|118423842|gb|ABK90232.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Francisella novicida U112] gi|194322522|gb|EDX20002.1| exodeoxyribonuclease V, beta subunit [Francisella tularensis subsp. novicida FTE] Length = 1216 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 16/113 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLS 93 + A+AG+GKT + + +RLLL PS +L +T TK A E+ RV EI + + Sbjct: 17 IEASAGTGKTFNITKLYIRLLLEKKLLPSNILVMTFTKDATQEIIGRVEKEIRDVLASYT 76 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 DE +SD +HL ++LE + TIH FC+ ++ + Sbjct: 77 DE-------------KKESDKENYKHLKRSLLEIDEA-AIFTIHGFCKKVLSE 115 >gi|325103975|ref|YP_004273629.1| UvrD/REP helicase [Pedobacter saltans DSM 12145] gi|324972823|gb|ADY51807.1| UvrD/REP helicase [Pedobacter saltans DSM 12145] Length = 768 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D + S Q A + T + A AGSGKT ++ RV L+ P +L LT T Sbjct: 3 LDYLKGLNSSQRQAVEQTEGPVMIVAGAGSGKTRVITYRVAHLIQKGVDPFQILVLTFTN 62 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +++ Sbjct: 63 KAAKEMRDRITKVV 76 >gi|153930858|ref|YP_001382829.1| recombination helicase AddA [Clostridium botulinum A str. ATCC 19397] gi|153935206|ref|YP_001386396.1| recombination helicase AddA [Clostridium botulinum A str. Hall] gi|251764508|sp|A7FPG0|ADDA_CLOB1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|152926902|gb|ABS32402.1| ATP-dependent nuclease subunit A [Clostridium botulinum A str. ATCC 19397] gi|152931120|gb|ABS36619.1| ATP-dependent nuclease subunit A [Clostridium botulinum A str. Hall] Length = 1279 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 25/132 (18%) Query: 44 KTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100 KT +LVQR++ +L P LL +T T AAAAEM R+ + I S DE ++ Sbjct: 31 KTAVLVQRIIEKILDKGEPIDIDKLLVVTFTNAAAAEMRERIGDAI---SKGLDEDPESK 87 Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160 + + Q NKS+ + TIH+FC +++ I +F I Sbjct: 88 VLRKQLTLLNKSN-------------------IMTIHSFCLQVIKNNFHTMEIDPNFRIC 128 Query: 161 DEEQSKKLIEEA 172 DE + + +EA Sbjct: 129 DETEGILMKQEA 140 >gi|260429772|ref|ZP_05783748.1| UvrD/REP helicase subfamily protein [Citreicella sp. SE45] gi|260419255|gb|EEX12509.1| UvrD/REP helicase subfamily protein [Citreicella sp. SE45] Length = 680 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 56/134 (41%), Gaps = 31/134 (23%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT L RV LL+ A P +L +T ++ AA E++ RV E ITA Sbjct: 33 VIAGAGSGKTMTLAHRVAHLLVNGADPQRILLMTFSRRAATELTRRV-ERITA------- 84 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 K GK +S A T HA I+++ L + Sbjct: 85 -------KAMGKGVVAEALSWA----------------GTFHAIGARILREHALSIGLHP 121 Query: 156 HFAIADEEQSKKLI 169 F+I D E S L+ Sbjct: 122 DFSIHDREDSADLM 135 >gi|56750402|ref|YP_171103.1| hypothetical protein syc0393_c [Synechococcus elongatus PCC 6301] gi|56685361|dbj|BAD78583.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 1061 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 42/203 (20%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMS 79 EQ A S V+A AG+GKT +L QR L L + P ++ LT T+ AAAE+ Sbjct: 6 EQRQAVQAAGSVAVTAGAGTGKTELLSQRYLWHLQQASESVSPLEIVVLTFTEKAAAELR 65 Query: 80 HRVLEII-TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + W SD + E +I T H+ Sbjct: 66 SRIRKAVGNKWPDRSDWLAEVEAAQI-----------------------------STFHS 96 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C I ++ P A + F I D+ K +++ L + M +EL + +++++ Sbjct: 97 LCARICREHPAAAGQPADFTILDDLAGKLW----QQTVLTAAM----QELDPSCFDVMDY 148 Query: 199 SNDED-IETLISDIISNRTALKL 220 S +ETL+ D + ++ L + Sbjct: 149 SEWRPLLETLLDDPVRSQALLAV 171 >gi|194290339|ref|YP_002006246.1| DNA-dependent atpase i and helicase ii [Cupriavidus taiwanensis LMG 19424] gi|193224174|emb|CAQ70183.1| DNA-dependent ATPase I and helicase II [Cupriavidus taiwanensis LMG 19424] Length = 782 Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 4/75 (5%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHT 71 DL++ +EQL A + P A + A AGSGKT +L R+ L+ N H P+ +L +T T Sbjct: 3 DLLANLNAEQLAAVTLPDEPALILAGAGSGKTRVLTTRI-AWLIQNGHVSPAGILAVTFT 61 Query: 72 KAAAAEMSHRVLEII 86 AA EM R+ ++ Sbjct: 62 NKAAKEMQTRLSSML 76 >gi|167836886|ref|ZP_02463769.1| DNA helicase II [Burkholderia thailandensis MSMB43] Length = 669 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|167824492|ref|ZP_02455963.1| DNA helicase II [Burkholderia pseudomallei 9] Length = 525 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|71894555|ref|YP_278663.1| ATP-dependent helicase [Mycoplasma synoviae 53] Length = 726 Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 37/135 (27%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AG+GKT +L +++L L+L PS +L +T T AA EM R+ Sbjct: 24 AGAGTGKTKVLTRKILYLILEKKVDPSKILAVTFTNKAAKEMKDRI-------------- 69 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 N K + L + T+H+FC +++++ + + Sbjct: 70 -------------NSKYYDKQKVLFENVF---------TLHSFCAQVLRKYINLIGFSRN 107 Query: 157 FAIADEEQSKKLIEE 171 F I DE K+++++ Sbjct: 108 FPILDELDKKQVLQD 122 >gi|116073017|ref|ZP_01470279.1| hypothetical protein RS9916_31242 [Synechococcus sp. RS9916] gi|116068322|gb|EAU74074.1| hypothetical protein RS9916_31242 [Synechococcus sp. RS9916] Length = 1222 Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 28/149 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 + A+AG+GKT L VLRLL +P LL +T T+AAAAE+ R+ Sbjct: 20 LEASAGTGKTFALAHLVLRLLSEGPNPLQVEQLLVVTFTEAAAAELRDRIA--------- 70 Query: 93 SDEILSAEITKIQGKKPNKSD---------MSKARH-----LLITILETPGGLKVQTIHA 138 L + +QG + D S+ H L+ LE + TIH Sbjct: 71 --RRLQQALALLQGADADAMDRPLQEWITAQSQTLHRTMEGRLLLALERLDRADITTIHG 128 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKK 167 FC +Q+ LEA + ++ + ++ Sbjct: 129 FCRRTLQRQALEAGLGPAVSLESQGHDRR 157 >gi|265762686|ref|ZP_06091254.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263255294|gb|EEZ26640.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 1624 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 3/80 (3%) Query: 16 LISQTKSEQL--LASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 L Q Q+ ++ +R V+A GSGKT +LV ++ LLL + LL LT ++ Sbjct: 1069 LFGQLSKRQMDIISDKGSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLLMLTFSR 1128 Query: 73 AAAAEMSHRVLEIITAWSHL 92 AAA E R++E+I +H Sbjct: 1129 AAATEFKQRLIELIGNAAHF 1148 >gi|284040435|ref|YP_003390365.1| UvrD/REP helicase [Spirosoma linguale DSM 74] gi|283819728|gb|ADB41566.1| UvrD/REP helicase [Spirosoma linguale DSM 74] Length = 764 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 8/67 (11%) Query: 28 SDPTRSA--------WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 +DP R A + A AGSGKT +L R+ L+ P +L LT T AA EM Sbjct: 9 NDPQREAVMHGSGPLMIIAGAGSGKTRVLTYRIAHLIENGVDPFRILSLTFTNKAAGEMR 68 Query: 80 HRVLEII 86 +R+ +++ Sbjct: 69 NRIEKVV 75 >gi|326800328|ref|YP_004318147.1| UvrD/REP helicase [Sphingobacterium sp. 21] gi|326551092|gb|ADZ79477.1| UvrD/REP helicase [Sphingobacterium sp. 21] Length = 761 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT ++ RV L+ P +L LT T AA EM R+++++ Sbjct: 24 IVAGAGSGKTRVITYRVAHLIQKGIDPFNILVLTFTNKAAKEMRERIMKVV 74 >gi|209521793|ref|ZP_03270474.1| UvrD/REP helicase [Burkholderia sp. H160] gi|209497763|gb|EDZ97937.1| UvrD/REP helicase [Burkholderia sp. H160] Length = 471 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 31/50 (62%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT+ L RV L++ A P +L LT ++ AA EM+ RV I Sbjct: 58 VIAGAGSGKTNTLAHRVANLVVKGADPQRILLLTFSRRAALEMTRRVTRI 107 >gi|270157203|ref|ZP_06185860.1| DNA helicase II [Legionella longbeachae D-4968] gi|289164396|ref|YP_003454534.1| DNA helicase II [Legionella longbeachae NSW150] gi|269989228|gb|EEZ95482.1| DNA helicase II [Legionella longbeachae D-4968] gi|288857569|emb|CBJ11407.1| DNA helicase II [Legionella longbeachae NSW150] Length = 721 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 61/156 (39%), Gaps = 45/156 (28%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ L+ N P +L +T T AA EM R Sbjct: 21 PLGNTLVLAGAGSGKTKVLVSRIAWLVAEQNLSPHGILAVTFTNKAAGEMRAR------- 73 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIHAFCEAIMQQF 147 L IL P GL V T H C ++++ Sbjct: 74 --------------------------------LNNILNMPVMGLWVGTFHGLCHRLLRRH 101 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 EA++ F I D E ++I K +A++ LD Sbjct: 102 YKEAHLPELFHILDTEDQARMI----KRVIAALNLD 133 >gi|321310938|ref|YP_004193267.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str. Langford 1] gi|319802782|emb|CBY93428.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str. Langford 1] Length = 584 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 11/83 (13%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM---------- 78 P + V A AG+GKT +L +R++ L+ +N A P +L +T T AA EM Sbjct: 14 PPKPILVIAPAGTGKTRVLTERIIYLIESNIAAPDEILAITFTNLAANEMVSRVENRIKD 73 Query: 79 SHRVLEIITAWSHLSDEILSAEI 101 HR+ + I L EIL +I Sbjct: 74 KHRIPDAIGTIHSLFGEILRKDI 96 >gi|281420135|ref|ZP_06251134.1| putative UvrD/REP helicase domain protein [Prevotella copri DSM 18205] gi|281405935|gb|EFB36615.1| putative UvrD/REP helicase domain protein [Prevotella copri DSM 18205] Length = 1070 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 11/129 (8%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L + + L++AN A T+L +T T A EM R+L + +H E Sbjct: 10 ASAGSGKTFTLAREYMTLVIANPASYRTILAVTFTNKATEEMKMRILGKLYEIAHGLPEA 69 Query: 97 LSAEITKIQGKKPN------KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + + +IQ P + + A HLLI +V TI F +++++ E Sbjct: 70 -NDYVNQIQQALPYLSSKQIQKNAESALHLLI---HNYNYFRVMTIDTFFQSVLRNLARE 125 Query: 151 ANITSHFAI 159 ++T++ I Sbjct: 126 LDLTANLRI 134 >gi|269796104|ref|YP_003315559.1| ATP-dependent DNA helicase PcrA [Sanguibacter keddieii DSM 10542] gi|269098289|gb|ACZ22725.1| ATP-dependent DNA helicase PcrA [Sanguibacter keddieii DSM 10542] Length = 857 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 52/135 (38%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL A PS +L +T T AAAEM RV I+ Sbjct: 48 IVAGAGSGKTRVLTHRIAHLLATGRARPSEILAITFTNKAAAEMRERVAAIVGP------ 101 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + V T H+ C I+++ + Sbjct: 102 --------------------------------AAGRMWVSTFHSACVRILRREAKSLGLR 129 Query: 155 SHFAIADEEQSKKLI 169 F+I D S++LI Sbjct: 130 QSFSIYDSADSQRLI 144 >gi|119943802|ref|YP_941482.1| UvrD/REP helicase [Psychromonas ingrahamii 37] gi|119862406|gb|ABM01883.1| UvrD/REP helicase [Psychromonas ingrahamii 37] Length = 723 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 43/157 (27%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86 S P ++ V A AGSGKT +L R+ L+ P+ ++L +T T AA EM R+ +I Sbjct: 19 SAPEQNMLVLAGAGSGKTRVLTHRIAWLMQVENIPTYSILAVTFTNKAAKEMRGRITDIC 78 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + GG+ + T H +++ Sbjct: 79 P--------------------------------------QQIGGMWIGTFHGTAHRLLRL 100 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 EAN+ F I D + KK++ K + S+ LD Sbjct: 101 HYQEANLPEQFQIIDSDDQKKMV----KRIIKSLNLD 133 >gi|262385344|gb|ACY64665.1| SRS2 [Arabidopsis thaliana] Length = 1147 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 63/164 (38%), Gaps = 45/164 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A GSGKT +V RVL LL PS +L +T TKAA +EM R Sbjct: 265 VIAGPGSGKTSTMVGRVLVLLNEGLLPSNILAMTFTKAATSEMRER-------------- 310 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 I K GKK K + + T H+F + + + TS Sbjct: 311 -----IGKSAGKKAAKD------------------ITISTFHSFSLQLCRMHADKLQRTS 347 Query: 156 HFAIADEEQSKKLI--------EEAKKSTLASIMLDNNEELKKA 191 F++ Q ++ I EE K + S+ ++ E L A Sbjct: 348 EFSVYGHGQQRRAIIEAVRLYEEEKKNGSKTSVPCESGEGLNGA 391 >gi|259507108|ref|ZP_05750008.1| ATP-dependent helicase PcrA [Corynebacterium efficiens YS-314] gi|259165386|gb|EEW49940.1| ATP-dependent helicase PcrA [Corynebacterium efficiens YS-314] Length = 824 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 25/189 (13%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85 + A AGSGKT +L +R+ L+ HP +L +T T AAAEM RV ++ Sbjct: 64 IVAGAGSGKTAVLTRRIAYLMRYRGVHPQQILAITFTNKAAAEMRERVADLVGPVAQRMW 123 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + + IL + +QG N + D +R LL T++ L ++ A + Sbjct: 124 VATFHSVCVRILRQQAQLVQGLNTNFTIYDSDDSRRLL-TMIAKDLELDIKKFSARTLSS 182 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 I+ A+AD E++ E + +A + ++ + L++A N D Sbjct: 183 AISNLKNELISPSEALADAERTHNPFE----TVVARVYVEYQQRLRRA--------NAVD 230 Query: 204 IETLISDII 212 + LI +++ Sbjct: 231 FDDLIGEVV 239 >gi|25027486|ref|NP_737540.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens YS-314] gi|23492768|dbj|BAC17740.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens YS-314] Length = 825 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 25/189 (13%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85 + A AGSGKT +L +R+ L+ HP +L +T T AAAEM RV ++ Sbjct: 65 IVAGAGSGKTAVLTRRIAYLMRYRGVHPQQILAITFTNKAAAEMRERVADLVGPVAQRMW 124 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + + IL + +QG N + D +R LL T++ L ++ A + Sbjct: 125 VATFHSVCVRILRQQAQLVQGLNTNFTIYDSDDSRRLL-TMIAKDLELDIKKFSARTLSS 183 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 I+ A+AD E++ E + +A + ++ + L++A N D Sbjct: 184 AISNLKNELISPSEALADAERTHNPFE----TVVARVYVEYQQRLRRA--------NAVD 231 Query: 204 IETLISDII 212 + LI +++ Sbjct: 232 FDDLIGEVV 240 >gi|240256061|ref|NP_194242.6| ATP binding / ATP-dependent DNA helicase/ DNA binding / hydrolase [Arabidopsis thaliana] Length = 1149 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 63/164 (38%), Gaps = 45/164 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A GSGKT +V RVL LL PS +L +T TKAA +EM R Sbjct: 265 VIAGPGSGKTSTMVGRVLVLLNEGLLPSNILAMTFTKAATSEMRER-------------- 310 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 I K GKK K + + T H+F + + + TS Sbjct: 311 -----IGKSAGKKAAKD------------------ITISTFHSFSLQLCRMHADKLQRTS 347 Query: 156 HFAIADEEQSKKLI--------EEAKKSTLASIMLDNNEELKKA 191 F++ Q ++ I EE K + S+ ++ E L A Sbjct: 348 EFSVYGHGQQRRAIIEAVRLYEEEKKNGSKTSVPCESGEGLNGA 391 >gi|229918202|ref|YP_002886848.1| recombination helicase AddA [Exiguobacterium sp. AT1b] gi|229469631|gb|ACQ71403.1| recombination helicase AddA [Exiguobacterium sp. AT1b] Length = 1205 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 25/130 (19%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL 92 VSA AGSGKT +LV+R+ LL T +L +T T AAAAEM R+ + + Sbjct: 22 VSAAAGSGKTAVLVERLSSRLLDETDELTADRMLVVTFTNAAAAEMKRRIAKAL------ 75 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 +E L + P + K R +L L + TIH+FC ++++ + Sbjct: 76 -EEALRDD--------PTNEYVRKQRQMLNRAL-------ITTIHSFCLEVIRENYYLLD 119 Query: 153 ITSHFAIADE 162 + F IA+E Sbjct: 120 LDPAFKIAEE 129 >gi|288925108|ref|ZP_06419044.1| ATP-dependent DNA helicase PcrA [Prevotella buccae D17] gi|288338298|gb|EFC76648.1| ATP-dependent DNA helicase PcrA [Prevotella buccae D17] Length = 819 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 73/188 (38%), Gaps = 43/188 (22%) Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL+S+ Q A + + V A AGSGKT +L ++ LL P +L LT T Sbjct: 2 VDLLSELNDSQREAVEYIDGPSLVIAGAGSGKTRVLTYKIAYLLQRGVRPYNILALTFTN 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ +++ L+ L+ Sbjct: 62 KAAAEMKARIGKLVGERDALA-------------------------------------LR 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ I++ S+F I DE S+ LI+ K A NE++ + Sbjct: 85 MGTFHSVFSRILRVEAAHIGYNSNFTIYDESDSRSLIKTIVKELAAG-----NEKMDEKQ 139 Query: 193 YEILEISN 200 Y+ + N Sbjct: 140 YKPATVHN 147 >gi|255534061|ref|YP_003094433.1| exodeoxyribonuclease V [Pedobacter heparinus DSM 2366] gi|255347045|gb|ACU06371.1| Exodeoxyribonuclease V [Pedobacter heparinus DSM 2366] Length = 1073 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 5/128 (3%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AGSGKT L L LLL+ + +L +T T A EM R+L+++ ++ D Sbjct: 9 LQASAGSGKTFSLTAHYLTLLLSGENKYREILAVTFTNKATEEMKSRILDVLQGFA-TGD 67 Query: 95 EILSAEITKIQGKKP--NKSDMS-KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 E ++ + P N + KA + IL V TI F + +++ F E Sbjct: 68 EKFNSYRNIVLNANPTLNADQLKEKADQIYRKILHDYSRFSVSTIDGFVQKVIRGFAFEL 127 Query: 152 NITSHFAI 159 + + +++ Sbjct: 128 GLDAGYSL 135 >gi|312199973|ref|YP_004020034.1| ATP-dependent DNA helicase PcrA [Frankia sp. EuI1c] gi|311231309|gb|ADP84164.1| ATP-dependent DNA helicase PcrA [Frankia sp. EuI1c] Length = 834 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT +L R+ LL A N HP +L +T T AA EM RV Sbjct: 81 IVAGAGSGKTRVLAHRIAYLLAARNVHPGEILAITFTNKAANEMRERV 128 >gi|167719901|ref|ZP_02403137.1| DNA helicase II [Burkholderia pseudomallei DM98] Length = 535 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|261252168|ref|ZP_05944741.1| exodeoxyribonuclease V beta chain [Vibrio orientalis CIP 102891] gi|260935559|gb|EEX91548.1| exodeoxyribonuclease V beta chain [Vibrio orientalis CIP 102891] Length = 1205 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 23/133 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT + LRLLL + P T +L +T T+AA AE+ R+ Sbjct: 23 IEASAGTGKTFTIAGLYLRLLLGHGSPETKHQVPLTVDQILVVTFTEAATAELRDRIRAR 82 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + A SD ++ + ++ SD +A +L+ V TIH F Sbjct: 83 IHDARLAFARGKSSDPVIEPLLDEV-------SDHKQAAEILLQAERQMDEAAVYTIHGF 135 Query: 140 CEAIMQQFPLEAN 152 C+ ++ Q E+ Sbjct: 136 CQRMLTQNAFESG 148 >gi|226356134|ref|YP_002785874.1| DNA helicase [Deinococcus deserti VCD115] gi|226318124|gb|ACO46120.1| putative DNA helicase UvrD [Deinococcus deserti VCD115] Length = 744 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 2/80 (2%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL+SQ Q A+D T A V A AGSGKT LV R+ L+ P +L +T T Sbjct: 11 DLLSQLNDTQAQAADHFTGPALVIAGAGSGKTRTLVYRIAHLIQHYGVDPGEILAVTFTN 70 Query: 73 AAAAEMSHRVLEIITAWSHL 92 AAAEM R ++ L Sbjct: 71 KAAAEMRERAQHLVEGADRL 90 >gi|260911842|ref|ZP_05918409.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260634053|gb|EEX52176.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 1074 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 10/143 (6%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHL-SD 94 A+AGSGKT L +++LL N H +L +T T A EM R+L ++ W L S Sbjct: 10 ASAGSGKTFTLAVNYIKILLRNPHSYRNILAVTFTNKATEEMKLRILSQLYGIWKLLPSS 69 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + ++T P + +A L +L +V+TI F +A+++ E ++T Sbjct: 70 KGYLDKVTSELDITPEYAS-QQAGAALSNLLHNYNYFRVETIDTFFQAVLRNLARELDLT 128 Query: 155 S--HFAIAD---EEQS-KKLIEE 171 + H + D E+Q+ KLIEE Sbjct: 129 ANLHVGLNDSQVEQQAVDKLIEE 151 >gi|254198264|ref|ZP_04904686.1| DNA helicase II [Burkholderia pseudomallei S13] gi|169655005|gb|EDS87698.1| DNA helicase II [Burkholderia pseudomallei S13] Length = 787 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAVPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|325279041|ref|YP_004251583.1| ATP-dependent DNA helicase, RecQ family [Odoribacter splanchnicus DSM 20712] gi|324310850|gb|ADY31403.1| ATP-dependent DNA helicase, RecQ family [Odoribacter splanchnicus DSM 20712] Length = 1655 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 26/169 (15%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAAAEMSHRV 82 ++++ +R V+A GSGKT +LV ++ LLL + LL LT ++AAA E R+ Sbjct: 1107 EIISDKDSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLLMLTFSRAAATEFKQRL 1166 Query: 83 LEIITAWSHLSD-EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 +E+I +H + + + + G+ N LE V+ + A Sbjct: 1167 MELIGNAAHFVEIKTFHSYCFDLMGRIGN--------------LEA-----VRDVVAKAA 1207 Query: 142 AIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 ++ Q +E N I + DE Q + E A L ++ NNEE++ Sbjct: 1208 VMINQGEVEPNKIGKTVLVIDEAQDMGVAEHA----LVKALMANNEEMR 1252 >gi|224541822|ref|ZP_03682361.1| hypothetical protein CATMIT_00994 [Catenibacterium mitsuokai DSM 15897] gi|224525245|gb|EEF94350.1| hypothetical protein CATMIT_00994 [Catenibacterium mitsuokai DSM 15897] Length = 1181 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 22/130 (16%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVLEIITAW 89 ++ VSA AGSGKT ILV R++ L++ N H S L LT TKAA EM R L + Sbjct: 20 KTILVSAPAGSGKTRILVARLISLIV-NDHYSMDQFLVLTFTKAAGNEMKQR-LNVSLHE 77 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 L+D D RH+ I P + T +FC+ +++++ Sbjct: 78 EALADH-----------------DEETLRHIQEQIQLLPHAY-ITTFDSFCKTLLEKYGY 119 Query: 150 EANITSHFAI 159 + F + Sbjct: 120 LIGVMPGFKV 129 >gi|319408809|emb|CBI82466.1| DNA helicase II [Bartonella schoenbuchensis R1] Length = 805 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L L AHP +L +T T AA EM R+ E++ Sbjct: 64 VLAGAGTGKTRVLTTRIFHILHLGLAHPKQILAITFTNKAAREMKTRIAELV 115 >gi|268680032|ref|YP_003304463.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946] gi|268618063|gb|ACZ12428.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946] Length = 676 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 33/56 (58%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A+ P+ + A+AG+GKT +V R+ LL PS +L LT T AAAEM RV Sbjct: 14 ATAPSGYNLIIASAGTGKTSTIVARLAYLLKNGVAPSKILLLTFTNKAAAEMIERV 69 >gi|206900332|ref|YP_002251111.1| ATP-dependent DNA helicase PcrA [Dictyoglomus thermophilum H-6-12] gi|206739435|gb|ACI18493.1| ATP-dependent DNA helicase PcrA [Dictyoglomus thermophilum H-6-12] Length = 625 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 39/160 (24%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D + + EQL A + R + A AGSGKT ++ ++ L+ N A P ++ LT T Sbjct: 1 MDFLKELNKEQLEAVLEIERPVLILAGAGSGKTRVITYKIAYLIKNNIAKPENIVALTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ A +D++ + Sbjct: 61 NKAAEEMKKRINNMLGAKD--ADKVWAG-------------------------------- 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H F +++ F +++ +F I DE + LI++ Sbjct: 87 ---TFHGFGLYLLKNFGKYWSLSPYFVIYDENDQEDLIKD 123 >gi|119713303|gb|ABL97368.1| DNA helicase II [uncultured marine bacterium HF10_45G01] Length = 428 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 40/142 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ ++ A P+ +L +T T AA EM +RV +I+ + Sbjct: 27 IVAGAGSGKTKVLTSRIANIIKEKKAFPNQILAVTFTNKAAKEMQNRVSKILGS------ 80 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK-VQTIHAFCEAIMQQFPLEANI 153 T GL + T H+ C ++++ AN+ Sbjct: 81 --------------------------------TAVGLSWLGTFHSICAKLLRKHASAANL 108 Query: 154 TSHFAIADEEQSKKLIEEAKKS 175 S+F I D + +LI+ K+ Sbjct: 109 NSNFTIIDTDDQIRLIKNICKA 130 >gi|15678500|ref|NP_275615.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta H] gi|2621541|gb|AAB84978.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta H] Length = 916 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 39/129 (30%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A G+GKT +LV+RV L+ P +L +T T+ AA E+ R++ + Sbjct: 29 VVAGPGAGKTRVLVERVAYLVKRKGVSPENILVITFTEKAAGELKARLINCVG------- 81 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 L AE+ +++ TIH+FC ++ P E Sbjct: 82 --LDAEL-----------------------------MQISTIHSFCSKVLSDHPEEHEFG 110 Query: 155 SHFAIADEE 163 + F I DEE Sbjct: 111 AGFEILDEE 119 >gi|325578673|ref|ZP_08148749.1| ATP-dependent helicase PcrA [Haemophilus parainfluenzae ATCC 33392] gi|325159712|gb|EGC71843.1| ATP-dependent helicase PcrA [Haemophilus parainfluenzae ATCC 33392] Length = 725 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 37/165 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ +T Sbjct: 4 SELLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ + ++ + +PN Sbjct: 62 FTNKAAAEMRHRIQDTLSKHA-----------------QPNLF----------------- 87 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 G+ + T H+ +++ + N+ F I D E +L++ K Sbjct: 88 GMWIGTFHSIAHRLLRAHHFDVNLPQDFQILDSEDQLRLVKRLMK 132 >gi|268607993|ref|ZP_06141724.1| recombination helicase AddA [Ruminococcus flavefaciens FD-1] Length = 1213 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 88/196 (44%), Gaps = 26/196 (13%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKA 73 ++ T+ +Q S S VSA AGSGKT +L +R+++L+ + ++ +T T Sbjct: 1 MAWTEQQQNAISARGSSVIVSAAAGSGKTAVLTERLVQLMADPESGVRADRIVVVTFTND 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA+E+ R L ++ + + P+ + + + LL + K+ Sbjct: 61 AASELKKR---------------LDMKLRALISEDPSNGHLLRQQTLLQSA-------KI 98 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TI++FC +++ + IT+ F + DE + L A + D +++ Y Sbjct: 99 STINSFCFDLIRDNISDQGITTGFGVLDESDNTVLKARAMDELFEEMSRDEYDKI-SFLY 157 Query: 194 EILEISNDEDIETLIS 209 + I N++ + +IS Sbjct: 158 DKFCIRNEKRLREVIS 173 >gi|224543224|ref|ZP_03683763.1| hypothetical protein CATMIT_02424 [Catenibacterium mitsuokai DSM 15897] gi|224523857|gb|EEF92962.1| hypothetical protein CATMIT_02424 [Catenibacterium mitsuokai DSM 15897] Length = 710 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 53/138 (38%), Gaps = 40/138 (28%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT ++ R+ L+ +P +L +T T AA EM RV Sbjct: 26 AGAGSGKTRVITYRIAYLIEEVGVNPHNILAITFTNKAANEMKTRVE------------- 72 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 +IL T G + TIH+ C +++Q + Sbjct: 73 --------------------------SILGTSLGTTICTIHSLCVRVLRQHSTAIGYPHN 106 Query: 157 FAIADEEQSKKLIEEAKK 174 F I DEE K LI++ K Sbjct: 107 FIIMDEEDQKSLIKKLYK 124 >gi|225574652|ref|ZP_03783262.1| hypothetical protein RUMHYD_02729 [Blautia hydrogenotrophica DSM 10507] gi|225038120|gb|EEG48366.1| hypothetical protein RUMHYD_02729 [Blautia hydrogenotrophica DSM 10507] Length = 1221 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 34/201 (16%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 R+ VSA AGSGKT +LV+R+++ + P LL +T T+AAA EM R Sbjct: 18 RNILVSAAAGSGKTAVLVERIIQRITDEEKPVDIDRLLVMTFTRAAAGEMRVR------- 70 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 L ++K + P + + LL ++ TI FC +++ + Sbjct: 71 --------LEQALSKRLEEDPENEYLQRQSTLL-------HNAQITTIDGFCSYLIRNYF 115 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208 ++ + ADE + K L + + L + + ++ +DE +E L+ Sbjct: 116 HMIDLDPGYRTADEGELKLLRVDVVREVLEECYAQKSSDFEEFAECFAPGKSDEGLEELV 175 Query: 209 SDIISNRTALKLIFFFFSYLW 229 LKL F S W Sbjct: 176 ---------LKLYDFAMSAPW 187 >gi|219556815|ref|ZP_03535891.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis T17] gi|289568920|ref|ZP_06449147.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis T17] gi|289542674|gb|EFD46322.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis T17] Length = 422 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 40/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ L+ A +L +T T AAAEM RV+ ++ Sbjct: 40 IVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVG------- 92 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 KAR++ ++ T H+ C I++ Q L + Sbjct: 93 --------------------EKARYMWVS-----------TFHSTCVRILRNQAALIEGL 121 Query: 154 TSHFAIADEEQSKKLIE 170 S+F+I D + S++L++ Sbjct: 122 NSNFSIYDADDSRRLLQ 138 >gi|198277296|ref|ZP_03209827.1| hypothetical protein BACPLE_03508 [Bacteroides plebeius DSM 17135] gi|198269794|gb|EDY94064.1| hypothetical protein BACPLE_03508 [Bacteroides plebeius DSM 17135] Length = 1606 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLL 66 +++ + +SQ + E +++ +R V+A GSGKT +LV ++ LLL + LL Sbjct: 1047 EKYKQLFGQLSQRQME-IISDKESRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLL 1105 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSH 91 LT ++AAA E R++E+I +H Sbjct: 1106 MLTFSRAAATEFKQRLMELIGNAAH 1130 >gi|86749818|ref|YP_486314.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2] gi|86572846|gb|ABD07403.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2] Length = 686 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 32/50 (64%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT+ L RV L++ A P +L +T ++ AAAEM+ RV I Sbjct: 33 VIAGAGSGKTNTLAHRVAHLVVNGADPHRILLMTFSRRAAAEMTRRVERI 82 >gi|167738899|ref|ZP_02411673.1| DNA helicase II [Burkholderia pseudomallei 14] Length = 370 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|268316024|ref|YP_003289743.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252] gi|262333558|gb|ACY47355.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252] Length = 681 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 39/159 (24%) Query: 13 TIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 T+D Q +Q + + V A AG+GKT LV RV L+ P ++ LT T Sbjct: 19 TVDYAGQLNPQQYAVVTAGGGPILVVAGAGTGKTRTLVYRVAYLVETGTPPEEIVLLTFT 78 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + AA EM R + +L ++QG Sbjct: 79 RRAAREMLAR-----------AAALLDGRCERVQGG------------------------ 103 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T HAFC +++++ S+F + D + +I+ Sbjct: 104 ---TFHAFCLGLLRRYAGRLGYPSNFTVLDASDAADVID 139 >gi|119472177|ref|ZP_01614379.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Alteromonadales bacterium TW-7] gi|119445096|gb|EAW26390.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Alteromonadales bacterium TW-7] Length = 1188 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 12/128 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTL---------LCLTHTKAAAAEMSHRVL-EI 85 + A+AG+GKT+ + LR LL P L L +T T AA E+ RV I Sbjct: 17 IEASAGTGKTYTITGLYLRYLLGMQIPGELNAPLSVEQILVVTFTDAATQEIKDRVRNRI 76 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 I A L + + E+ I+G D +A LL ++ + TIH FC+ +++ Sbjct: 77 IAARDALLGQTPNDEL--IEGVIAAIGDKHRAFDLLDAAAKSMDEAAIFTIHGFCQRMLK 134 Query: 146 QFPLEANI 153 Q E+ + Sbjct: 135 QHAFESGV 142 >gi|16273110|ref|NP_439344.1| DNA-dependent helicase II [Haemophilus influenzae Rd KW20] gi|1174922|sp|Q02322|UVRD_HAEIN RecName: Full=DNA helicase II gi|1574115|gb|AAC22841.1| DNA helicase II (uvrD) [Haemophilus influenzae Rd KW20] Length = 727 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + E++ A P + V A AGSGKT +L R+ L+ + N +++ +T Sbjct: 5 SELLDGLNDKQRERVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62 Query: 70 HTKAAAAEMSHRV 82 T AAAEM HR+ Sbjct: 63 FTNKAAAEMRHRI 75 >gi|295677216|ref|YP_003605740.1| UvrD/REP helicase [Burkholderia sp. CCGE1002] gi|295437059|gb|ADG16229.1| UvrD/REP helicase [Burkholderia sp. CCGE1002] Length = 731 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 25/53 (47%), Positives = 32/53 (60%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT+ L RV L++ A P +L LT ++ AA EM+ RV I A Sbjct: 63 VIAGAGSGKTNTLAHRVANLVVKGADPQRILLLTFSRRAALEMTRRVTRITGA 115 >gi|71006344|ref|XP_757838.1| hypothetical protein UM01691.1 [Ustilago maydis 521] gi|46097274|gb|EAK82507.1| hypothetical protein UM01691.1 [Ustilago maydis 521] Length = 1176 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 40/160 (25%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKAAAAEMSHRVLEII 86 PT + A GSGKT +L RV L+L A+ P +L +T T AA EM R++++I Sbjct: 58 PTTCLQILAGPGSGKTRVLTSRVAWLILDPANKLRPEDILVVTFTNKAANEMKMRLVKLI 117 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 GK E L + T H+ C +++ Sbjct: 118 -------------------GK------------------ERVDNLVIGTFHSVCARYLRK 140 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + +++++F+I D E +K++++ K A + +N E Sbjct: 141 YGRLISLSNNFSIIDSEDAKRMLKSILKELKAELEKENLE 180 >gi|198277205|ref|ZP_03209736.1| hypothetical protein BACPLE_03414 [Bacteroides plebeius DSM 17135] gi|198269703|gb|EDY93973.1| hypothetical protein BACPLE_03414 [Bacteroides plebeius DSM 17135] Length = 1075 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 8/127 (6%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLE----IITAWSHL 92 A+AGSGKT L +R L+ + + +L +T T A AEM R+LE I TA Sbjct: 12 ASAGSGKTFTLAVHYIRQLIEDPYAYRRILAVTFTNKATAEMKERILEQLYGIATA-DEG 70 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 SD L EI K K + S AR L I+ +++TI +F +++M+ E Sbjct: 71 SDGYLK-EIQKTSAKSVEEIRES-AREALRHIIHDYSRFRIETIDSFFQSVMRNLARELE 128 Query: 153 ITSHFAI 159 + ++ +I Sbjct: 129 LGANLSI 135 >gi|119475194|ref|ZP_01615547.1| DNA helicase II [marine gamma proteobacterium HTCC2143] gi|119451397|gb|EAW32630.1| DNA helicase II [marine gamma proteobacterium HTCC2143] Length = 725 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 33/136 (24%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ A P ++L +T T AA EM R+ D Sbjct: 27 VLAGAGSGKTRVLVHRIAWLIQAEGLSPFSILSVTFTNKAAKEMRARI-----------D 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E+L + + L P G+ V T H +++ +A + Sbjct: 76 ELLGSSASG---------------------LGAPRGMWVGTFHGIAHRLLKAHWKQAGLP 114 Query: 155 SHFAIADEEQSKKLIE 170 +F I D + +L++ Sbjct: 115 QNFQILDSDDQLRLVK 130 >gi|54026969|ref|YP_121211.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152] gi|54018477|dbj|BAD59847.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152] Length = 842 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 46/167 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ LL A + P +L +T T AAAEM RV ++ Sbjct: 71 IVAGAGSGKTAVLTRRIAYLLAARDVSPGQILAITFTNKAAAEMRERVTGLV-------- 122 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 P + M V T H+ C I++ Q L + Sbjct: 123 -------------GPRAATMW-----------------VSTFHSSCVRILRMQAALLPGL 152 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 S+F+I D + S++L+ T+ S LD + + A + ISN Sbjct: 153 NSNFSIYDADDSRRLL------TMISRDLDIDTKKYSARLLVTAISN 193 >gi|256831952|ref|YP_003160679.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603] gi|256685483|gb|ACV08376.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603] Length = 1103 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 32/190 (16%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPS 63 S ++ ++ +DL T +Q + P S V A AGSGKT + RV+ L+AN P Sbjct: 7 SARDIAQLLDLPHPTVEQQAIIEAPLESMLVIAGAGSGKTETMSARVV-WLIANQIIAPE 65 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L LT T+ AA E++ R+ + ++ + S I D + RH T Sbjct: 66 RVLGLTFTRKAAGELTERIRARLAHLDRVAPGLTSRRI-----------DTNNDRH---T 111 Query: 124 ILETPGGLK------VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 +TP L + T +++ ++ +T H E +L+ EA + Sbjct: 112 TADTPPALSALARPTISTYNSYAASL---------VTEHGLRIGREPGARLLTEASIWAM 162 Query: 178 ASIMLDNNEE 187 S ++D+ +E Sbjct: 163 VSDIVDHWQE 172 >gi|160933076|ref|ZP_02080465.1| hypothetical protein CLOLEP_01918 [Clostridium leptum DSM 753] gi|156868150|gb|EDO61522.1| hypothetical protein CLOLEP_01918 [Clostridium leptum DSM 753] Length = 740 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/139 (23%), Positives = 59/139 (42%), Gaps = 39/139 (28%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT +L+ R+ ++ + A P +L +T T AA E+ R+ ++ Sbjct: 30 AGAGSGKTTVLINRIAYIIDQSLAKPWQILAITFTNKAAGELKERLTAMLG--------- 80 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 +T G + T H+ C I+++ +SH Sbjct: 81 -----------------------------DTGGDVWAATFHSTCARILRRDGDRIGYSSH 111 Query: 157 FAIADEEQSKKLIEEAKKS 175 F + D + SK+L+++ +K+ Sbjct: 112 FTVYDTDDSKRLVKDCQKA 130 >gi|197336488|ref|YP_002157503.1| ATP-dependent DNA helicase Rep [Vibrio fischeri MJ11] gi|197315191|gb|ACH64639.1| ATP-dependent DNA helicase Rep [Vibrio fischeri MJ11] Length = 762 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 35/53 (66%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 ++A AG+GKT +L +R+ + + + +P +++ +T TK AA EM RV ++ A Sbjct: 27 ITAGAGAGKTAVLTKRIAKAIYHSGNPESVVAITFTKDAANEMKERVNNLVGA 79 >gi|314982168|gb|EFT26261.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA3] gi|315090399|gb|EFT62375.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA4] Length = 810 Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 DL + L A P V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 44 DLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100 Query: 74 AAAEMSHRVLEII 86 AAAEM RV++++ Sbjct: 101 AAAEMKARVVDLV 113 >gi|300870871|ref|YP_003785742.1| ATP dependent DNA helicase [Brachyspira pilosicoli 95/1000] gi|300688570|gb|ADK31241.1| ATP dependent DNA helicase [Brachyspira pilosicoli 95/1000] Length = 660 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 15/111 (13%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE---------IITA 88 A AGSGKT ++ +R+ L+ PS +L +T T AA EM R+ +I+ Sbjct: 21 AGAGSGKTRVITERIAYLIKNGIDPSNILAVTFTNKAANEMRERIASLLKEKPKQLVIST 80 Query: 89 WSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIH 137 + +L +I K+ G K N S S +R L+ IL +KV T++ Sbjct: 81 FHSFCVRVLKLDIDKL-GYKKNFSIYSSSDSRTLIRNILRE---VKVNTLN 127 >gi|282855099|ref|ZP_06264431.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J139] gi|282581687|gb|EFB87072.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J139] Length = 810 Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 DL + L A P V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 44 DLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100 Query: 74 AAAEMSHRVLEII 86 AAAEM RV++++ Sbjct: 101 AAAEMKARVVDLV 113 >gi|167816120|ref|ZP_02447800.1| putative helicase [Burkholderia pseudomallei 91] Length = 703 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|91762855|ref|ZP_01264820.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1002] gi|91718657|gb|EAS85307.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1002] Length = 678 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 40/167 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68 +SE ++ ++ + E +L D + A AGSGKT +L R+ ++ A P+ +L + Sbjct: 3 NSEYLNNLNNAQKEAVLYLDG--PLLIVAGAGSGKTKVLTSRIAHIINEKKAFPNQILSV 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM +RV I+ + E Sbjct: 61 TFTNKAAKEMQNRVSSILNS-------------------------------------EAI 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G + T H+ C ++++ A +TS+F I D + +LI+ K+ Sbjct: 84 GLSWLGTFHSICAKLLRKHAPAAGLTSNFTIIDTDDQVRLIKNICKA 130 >gi|329894799|ref|ZP_08270599.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium IMCC3088] gi|328922693|gb|EGG30027.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium IMCC3088] Length = 715 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 76/195 (38%), Gaps = 45/195 (23%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLT 69 +E +D ++ + E +A++P +A V A AGSGKT +LV R+ L+ A P +LL +T Sbjct: 4 TELLDGLNPAQRE-AVAAEPG-NALVLAGAGSGKTRVLVHRIAWLIRAEGFSPQSLLAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R ++ +H Sbjct: 62 FTNKAAKEMRGRTESMLGLSTH-------------------------------------- 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G V T H +++ EA + +F I D + +L+ K + + LD+ Sbjct: 84 GFWVGTFHGLAHRLLKAHWREAGLQQNFQILDSDDQLRLV----KRIVKELGLDDGRWPP 139 Query: 190 KAFYEILEISNDEDI 204 K + DE + Sbjct: 140 KQIQGFVNAQKDEGL 154 >gi|314964915|gb|EFT09014.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL082PA2] gi|315103904|gb|EFT75880.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA2] gi|327325604|gb|EGE67403.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL103PA1] Length = 810 Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 DL + L A P V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 44 DLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100 Query: 74 AAAEMSHRVLEII 86 AAAEM RV++++ Sbjct: 101 AAAEMKARVVDLV 113 >gi|257068093|ref|YP_003154348.1| ATP-dependent DNA helicase PcrA [Brachybacterium faecium DSM 4810] gi|256558911|gb|ACU84758.1| ATP-dependent DNA helicase PcrA [Brachybacterium faecium DSM 4810] Length = 932 Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 65/168 (38%), Gaps = 44/168 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ LL + A P +L +T T AAAEM RV E++ + Sbjct: 139 IVAGAGSGKTRVLTRRIAHLLHSREALPGEILAITFTNKAAAEMRERVGELVGPVAR--- 195 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + V T H+ C I+++ A + Sbjct: 196 -----------------------------------SMWVSTFHSACVRILRRDAAAAGLK 220 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF-YEILEISND 201 S F I D S +LI K + LD + +A I + ND Sbjct: 221 SSFTIYDSADSLRLITTIAK----DLQLDTKKHAPRALASRISSLKND 264 >gi|88607848|ref|YP_504873.1| ATP-dependent DNA helicase UvrD [Anaplasma phagocytophilum HZ] gi|88598911|gb|ABD44381.1| ATP-dependent DNA helicase, UvrD/Rep family [Anaplasma phagocytophilum HZ] Length = 788 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 3/52 (5%) Query: 114 MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 +++AR+L I P LKVQT+H FC++++ FP EA I+++F + + +S Sbjct: 25 INRARNLFFRI---PNILKVQTVHGFCKSLISSFPSEAGISANFEVRELSES 73 >gi|71082723|ref|YP_265442.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1062] gi|71061836|gb|AAZ20839.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1062] Length = 678 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 40/167 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68 +SE ++ ++ + E +L D + A AGSGKT +L R+ ++ A P+ +L + Sbjct: 3 NSEYLNNLNNAQKEAVLYLDG--PLLIVAGAGSGKTKVLTSRIAHIINEKKAFPNQILSV 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM +RV I+ + E Sbjct: 61 TFTNKAAKEMQNRVSSILNS-------------------------------------EAI 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G + T H+ C ++++ A +TS+F I D + +LI+ K+ Sbjct: 84 GLSWLGTFHSICAKLLRKHAPAAGLTSNFTIIDTDDQVRLIKNICKA 130 >gi|298524440|ref|ZP_07011849.1| ATP-dependent helicase [Mycobacterium tuberculosis 94_M4241A] gi|298494234|gb|EFI29528.1| ATP-dependent helicase [Mycobacterium tuberculosis 94_M4241A] Length = 695 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 40/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ L+ A +L +T T AAAEM RV+ ++ Sbjct: 40 IVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVG------- 92 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 KAR++ ++ T H+ C I++ Q L + Sbjct: 93 --------------------EKARYMWVS-----------TFHSTCVRILRNQAALIEGL 121 Query: 154 TSHFAIADEEQSKKLIE 170 S+F+I D + S++L++ Sbjct: 122 NSNFSIYDADDSRRLLQ 138 >gi|50843216|ref|YP_056443.1| ATP-dependent DNA helicase [Propionibacterium acnes KPA171202] gi|50840818|gb|AAT83485.1| ATP-dependent DNA helicase [Propionibacterium acnes KPA171202] gi|315106181|gb|EFT78157.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL030PA1] Length = 810 Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 DL + L A P V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 44 DLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100 Query: 74 AAAEMSHRVLEII 86 AAAEM RV++++ Sbjct: 101 AAAEMKARVVDLV 113 >gi|33593011|ref|NP_880655.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I] gi|33563386|emb|CAE42260.1| probable ATP-dependent DNA helicase [Bordetella pertussis Tohama I] Length = 697 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 31/51 (60%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT+ L RV L+L A P +L LT ++ AA EM RV ++ Sbjct: 41 VIAGAGSGKTNTLAHRVAHLILHGADPQRMLLLTFSRRAAQEMERRVGGVL 91 >gi|330993524|ref|ZP_08317459.1| putative DNA helicase II-like protein [Gluconacetobacter sp. SXCC-1] gi|329759554|gb|EGG76063.1| putative DNA helicase II-like protein [Gluconacetobacter sp. SXCC-1] Length = 737 Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 40/159 (25%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 D +++ EQ A + T V A AG+GKT +L R +LL+ A P+ +L +T T Sbjct: 12 DYLNRLNPEQRDAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLSGRARPNQILAVTFTN 71 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ E GL Sbjct: 72 KAAREMRERVSALLG--------------------------------------EPAEGLW 93 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 + T HA C ++++ +TS F I D + +L+++ Sbjct: 94 LGTFHALCARMLRRHAEHVGLTSSFTILDTDDQLRLLKQ 132 >gi|315093785|gb|EFT65761.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL060PA1] Length = 810 Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 DL + L A P V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 44 DLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100 Query: 74 AAAEMSHRVLEII 86 AAAEM RV++++ Sbjct: 101 AAAEMKARVVDLV 113 >gi|225174502|ref|ZP_03728501.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1] gi|225170287|gb|EEG79082.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1] Length = 1069 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 20/171 (11%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMS 79 ++ Q + + T + V A AGSGKT LVQR+ L+ + +T T+ AA E+ Sbjct: 10 QARQAIKTRLTETFLVEAGAGSGKTTSLVQRMTALISTGQCQMENMAAVTFTRKAAGELR 69 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R E K++ + + +D + + L T L + TIH+F Sbjct: 70 ERFQE------------------KLEKEYQSTTDPT-TKQTLETALSQLDRAFIGTIHSF 110 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 C ++++ P+EA ++ F + + K L + A + L + + LK+ Sbjct: 111 CSRLLRERPVEAGMSPDFTEIEGLEEKILAQTAWEEYLLEVRFTQPQLLKQ 161 >gi|210629805|ref|ZP_03296129.1| hypothetical protein COLSTE_00012 [Collinsella stercoris DSM 13279] gi|210160798|gb|EEA91769.1| hypothetical protein COLSTE_00012 [Collinsella stercoris DSM 13279] Length = 660 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 40/159 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 ID+++ + E +L ++ V A AGSGKT +L R+ R++ P +L +T T Sbjct: 111 IDILNPAQREAVLTTE--GPLLVLAGAGSGKTRVLTFRIARMIGDLGIRPWQILAITFTN 168 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ + L D + G+ Sbjct: 169 KAAAEMRERL------GAMLPDGGMR-------------------------------GMW 191 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 V T HA C I+++ T F I D++ S++++ E Sbjct: 192 VCTFHAMCVRILREDADLLGYTGQFTIYDDDDSRRMVRE 230 >gi|92119222|ref|YP_578951.1| UvrD/REP helicase [Nitrobacter hamburgensis X14] gi|91802116|gb|ABE64491.1| ATP-dependent DNA helicase, Rep family [Nitrobacter hamburgensis X14] Length = 689 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 32/50 (64%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT+ L RV L++ A P +L +T ++ AA+EM+ RV I Sbjct: 34 VIAGAGSGKTNTLAHRVAHLIVNGADPRRILLMTFSRRAASEMTRRVERI 83 >gi|257094702|ref|YP_003168343.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047226|gb|ACV36414.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 704 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 34/56 (60%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 +R+ + A AGSGKT L RV L+ A P +L LT ++ AA+EM+ RV I+ Sbjct: 44 SRALLIIAGAGSGKTSTLAHRVAHLVAQGADPGRILLLTFSRRAASEMTRRVERIL 99 >gi|33600795|ref|NP_888355.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50] gi|33568395|emb|CAE32307.1| probable ATP-dependent DNA helicase [Bordetella bronchiseptica RB50] Length = 697 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 31/51 (60%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT+ L RV L+L A P +L LT ++ AA EM RV ++ Sbjct: 41 VIAGAGSGKTNTLAHRVAHLILHGADPQRMLLLTFSRRAAQEMERRVGGVL 91 >gi|149194062|ref|ZP_01871160.1| ATP-DEPENDENT DNA HELICASE [Caminibacter mediatlanticus TB-2] gi|149136015|gb|EDM24493.1| ATP-DEPENDENT DNA HELICASE [Caminibacter mediatlanticus TB-2] Length = 677 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Query: 11 SETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 SE +D + + Q A+ A + A AGSGKT L R+ LL P+ L LT Sbjct: 13 SEKMDFLEELNEAQKKAATHIDGALLILAGAGSGKTKTLTSRLAYLLSLGIDPANTLTLT 72 Query: 70 HTKAAAAEMSHRVLEII 86 T AA+EM R L +I Sbjct: 73 FTNKAASEMRERALSLI 89 >gi|114565925|ref|YP_753079.1| superfamily I DNA/RNA helicase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336860|gb|ABI67708.1| ATP-dependent DNA helicase PcrA [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 696 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT +L +R++ L+ P ++ +T T AA EM RV Sbjct: 25 VLAGAGSGKTRVLTRRIVHLVKQGIPPHRIMAITFTNKAAQEMRSRV------------- 71 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 I++L +QT H+ C I++ E Sbjct: 72 --------------------------ISMLPDFNSQWIQTFHSTCNRILRMDIQELGFDK 105 Query: 156 HFAIADEEQSKKLIE 170 +F+I D+ ++K LI+ Sbjct: 106 YFSIIDDTEAKSLIK 120 >gi|119896636|ref|YP_931849.1| ATP-dependent DNA helicase [Azoarcus sp. BH72] gi|119669049|emb|CAL92962.1| ATP-dependent DNA helicase [Azoarcus sp. BH72] Length = 700 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT+ L RV L+ A P +L LT ++ AA EM RV I+ Sbjct: 45 VIAGAGSGKTNTLAHRVAHLIANGADPGRILLLTFSRRAADEMGRRVQRIL 95 >gi|109898077|ref|YP_661332.1| exodeoxyribonuclease V, beta subunit [Pseudoalteromonas atlantica T6c] gi|109700358|gb|ABG40278.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudoalteromonas atlantica T6c] Length = 1320 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 8/147 (5%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP---STLLCLTHTKAAAAEMSHRVLEII 86 T ++ + A+AG+GKT+ +V LRLLL + P +L +T T AA AE+ R+ + + Sbjct: 12 TGASLIEASAGTGKTYTIVNLYLRLLLGDECTPLSVDKILVVTFTNAATAELKQRIRQRL 71 Query: 87 T-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 A+ + S + T+ ++ + ++ R LL+ I + V TIH FC+ ++ Sbjct: 72 QRAYLDFYAGVSSDDFTQYLIERSDNIELDCHR-LLLAIKQMDDA-AVYTIHGFCQRMLS 129 Query: 146 QFPLEAN-ITSHFAIADEEQSKKLIEE 171 E+ + + DE Q KL E Sbjct: 130 LHAFESGAMYEQSLVLDESQWLKLAVE 156 >gi|314924241|gb|EFS88072.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL001PA1] Length = 810 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 DL + L A P V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 44 DLNEPQRDAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100 Query: 74 AAAEMSHRVLEII 86 AAAEM RV++++ Sbjct: 101 AAAEMKARVVDLV 113 >gi|289573579|ref|ZP_06453806.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis K85] gi|289538010|gb|EFD42588.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis K85] Length = 694 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 40/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ L+ A +L +T T AAAEM RV+ ++ Sbjct: 40 IVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVG------- 92 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 KAR++ ++ T H+ C I++ Q L + Sbjct: 93 --------------------EKARYMWVS-----------TFHSTCVRILRNQAALIEGL 121 Query: 154 TSHFAIADEEQSKKLIE 170 S+F+I D + S++L++ Sbjct: 122 NSNFSIYDADDSRRLLQ 138 >gi|170724287|ref|YP_001751975.1| DNA-dependent helicase II [Pseudomonas putida W619] gi|169762290|gb|ACA75606.1| UvrD/REP helicase [Pseudomonas putida W619] Length = 729 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM R+ +++ Sbjct: 30 VLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQLLGI------ 83 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P G+ V T H +++ EA + Sbjct: 84 --------------------------------NPAGMWVGTFHGLAHRLLRAHWQEARLV 111 Query: 155 SHFAIADEEQSKKLIE 170 +F I D + ++L++ Sbjct: 112 QNFQILDSDDQQRLVK 127 >gi|119025711|ref|YP_909556.1| ATP-dependent DNA helicase PcrA [Bifidobacterium adolescentis ATCC 15703] gi|118765295|dbj|BAF39474.1| ATP-dependent DNA helicase PcrA [Bifidobacterium adolescentis ATCC 15703] Length = 879 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 38/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A AGSGKT +L +R+ LL S++L +T T AAAEM R++ ++ Sbjct: 32 IGAGAGSGKTRVLTRRIAWLLAHGFWASSILAITFTNKAAAEMRERLVTLVG-------- 83 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +A H+ I+ T H+ C I+++ E + S Sbjct: 84 -------------------PEAEHMWIS-----------TFHSACVRILRRDGKEIGLKS 113 Query: 156 HFAIADEEQSKKLIE 170 F+I D S++L++ Sbjct: 114 GFSIYDTADSERLVK 128 >gi|317476247|ref|ZP_07935498.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA] gi|316907658|gb|EFV29361.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA] Length = 1087 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 7/128 (5%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAW--SHLS 93 A+AGSGKT L ++LL+ N +L +T T A AEM R+L ++ W H S Sbjct: 8 ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILTQLYGIWKEDHAS 67 Query: 94 DEILSAEITKIQGKKP--NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 D L I + P +K +A L +L +V+TI +F +++M+ E Sbjct: 68 DAYLK-RIKEDLASSPLSDKELRRRAGMALQYMLHDYSRFRVETIDSFFQSVMRNLAREL 126 Query: 152 NITSHFAI 159 ++ + I Sbjct: 127 ELSPNLNI 134 >gi|184201466|ref|YP_001855673.1| ATP-dependent DNA helicase PcrA [Kocuria rhizophila DC2201] gi|183581696|dbj|BAG30167.1| ATP-dependent DNA helicase UvrD1 [Kocuria rhizophila DC2201] Length = 818 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 49/163 (30%) Query: 23 EQLLA--SDPTRSA--------WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 EQL+A ++P R+A + A AGSGKT +L R+ LL A +L +T T Sbjct: 34 EQLVAGLNEPQRAAVEHSGAPLLIVAGAGSGKTRVLTHRIAHLLATGRARRGEILAITFT 93 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM R+ E++ AR + I+ Sbjct: 94 NKAAAEMRERIAELVG---------------------------DSARTMWIS-------- 118 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 T H+ C I+++ + ++F+I D S +LI + K Sbjct: 119 ---TFHSLCVRILRREAKTLGLNTNFSIYDSADSLRLITQVAK 158 >gi|330443998|ref|YP_004376984.1| ATP-dependent helicase PcrA [Chlamydophila pecorum E58] gi|328807108|gb|AEB41281.1| ATP-dependent helicase PcrA [Chlamydophila pecorum E58] Length = 637 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 + P R V A AG+GKT +++ R+L L+ P +L +T T AA E+ R++ Sbjct: 15 VTSPLRPVLVLAGAGAGKTRVVIYRILHLIHQGIAPREILAVTFTNKAAKELKERIM 71 >gi|255020481|ref|ZP_05292546.1| Exodeoxyribonuclease V beta chain [Acidithiobacillus caldus ATCC 51756] gi|254970091|gb|EET27588.1| Exodeoxyribonuclease V beta chain [Acidithiobacillus caldus ATCC 51756] Length = 1185 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 12/129 (9%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPST-------LLCLTHTKAAAAEMSHRV--- 82 SA + A+AG+GKT+ + LRLLL + P+T +L +T T+AA E+ R+ Sbjct: 15 SALIEASAGTGKTYTIATLYLRLLLGHGEPATPPRQPREILVMTFTRAATEELRERIALR 74 Query: 83 -LEIITAWSHLSDEILS-AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 E ITA + S A + ++ P+ + + A L + + TI A+C Sbjct: 75 LYETITALREGAPPASSDALLQRLLRDYPDPATRAAAIIRLENAFNSVDEASIHTIDAWC 134 Query: 141 EAIMQQFPL 149 ++++ L Sbjct: 135 HRVLREHAL 143 >gi|256830236|ref|YP_003158964.1| UvrD/REP helicase [Desulfomicrobium baculatum DSM 4028] gi|256579412|gb|ACU90548.1| UvrD/REP helicase [Desulfomicrobium baculatum DSM 4028] Length = 724 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 31/46 (67%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 V A AGSGKT +V R+ RL+ + P+ +L LT T+ A++EM HR Sbjct: 26 VIAGAGSGKTRTVVYRLARLVESGVSPAEILLLTFTRKASSEMLHR 71 >gi|313680462|ref|YP_004058201.1| uvrd/rep helicase [Oceanithermus profundus DSM 14977] gi|313153177|gb|ADR37028.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977] Length = 917 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 11/138 (7%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A+AG+GKT+ L R LA P L +T T++AAAE+ R+ E + A + + Sbjct: 6 ASAGTGKTYALTSR-FTAALAEHPPYRLAAVTFTRSAAAELKARLRERLLAIAAGRFQPS 64 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157 AE P ++ + +A L +L G V TIH F +++Q L + F Sbjct: 65 GAE------DVPPEAVVRRAGALATEVL----GATVTTIHGFFAELLRQNALALGLEPDF 114 Query: 158 AIADEEQSKKLIEEAKKS 175 D +S+++ E ++ Sbjct: 115 LRIDASESQQIFAEEARA 132 >gi|239995580|ref|ZP_04716104.1| DNA helicase II [Alteromonas macleodii ATCC 27126] Length = 723 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 45/174 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P +A V A AGSGKT +LV R+ L+ + N P ++L +T Sbjct: 4 SRLLDELNDKQREAVAA--PLSNALVLAGAGSGKTRVLVHRIAWLMEVENIAPFSILAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ +S M ++ H Sbjct: 62 FTNKAAKEMRGRI----------------------------ESLMGRSLH---------- 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 + + T H +++ EAN+ +F I D + +LI + L ++ LD Sbjct: 84 NMWIGTFHGLAHRLLRAHHAEANLPENFQIIDSDDQYRLI----RRILKAMNLD 133 >gi|125975357|ref|YP_001039267.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum ATCC 27405] gi|256005497|ref|ZP_05430459.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum DSM 2360] gi|281419317|ref|ZP_06250332.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum JW20] gi|125715582|gb|ABN54074.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum ATCC 27405] gi|255990552|gb|EEU00672.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum DSM 2360] gi|281406937|gb|EFB37200.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum JW20] gi|316939472|gb|ADU73506.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum DSM 1313] Length = 741 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ N HP+++L +T T AA EM R+ ++ Sbjct: 24 VLAGAGSGKTKVLTHRIAYLIKEKNVHPASILAITFTNKAAREMRERIDRLV 75 >gi|302338886|ref|YP_003804092.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293] gi|301636071|gb|ADK81498.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293] Length = 670 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 39/163 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 IDL + EQ +A+ + A AGSGKT ++ R+ +L S++L LT T Sbjct: 3 IDLAKELNKEQFIAASTIDGPLLIIAGAGSGKTRMITFRIAHMLEEGIPQSSILALTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EMS R I + GK+ + L Sbjct: 63 KAAREMSDR-------------------IRSLTGKRLS-------------------NLT 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V T HAF ++++ + S+F+I D+ LI+E+ + Sbjct: 85 VSTFHAFGVKVLRKSIEYLDYKSNFSIYDQVDKTALIKESARG 127 >gi|302036648|ref|YP_003796970.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii] gi|300604712|emb|CBK41044.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii] Length = 717 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 34/58 (58%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 A V A AGSGKT LV RV L+ + PS +L LT T+ ++ EM RV +I + S Sbjct: 87 ALVIAGAGSGKTRTLVHRVAYLIDSGVDPSQILLLTFTRKSSEEMLERVGALIGSRSQ 144 >gi|289753005|ref|ZP_06512383.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis EAS054] gi|289693592|gb|EFD61021.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis EAS054] Length = 650 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 40/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ L+ A +L +T T AAAEM RV+ ++ Sbjct: 40 IVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVG------- 92 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 KAR++ ++ T H+ C I++ Q L + Sbjct: 93 --------------------EKARYMWVS-----------TFHSTCVRILRNQAALIEGL 121 Query: 154 TSHFAIADEEQSKKLIE 170 S+F+I D + S++L++ Sbjct: 122 NSNFSIYDADDSRRLLQ 138 >gi|153006283|ref|YP_001380608.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5] gi|152029856|gb|ABS27624.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5] Length = 682 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/47 (48%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++ RV LLL P +L +T T AA EM RV Sbjct: 33 VLAGAGSGKTRVIAHRVAYLLLQGVEPEQILAVTFTNKAAGEMRERV 79 >gi|303237262|ref|ZP_07323832.1| putative ATP-dependent helicase PcrA [Prevotella disiens FB035-09AN] gi|302482649|gb|EFL45674.1| putative ATP-dependent helicase PcrA [Prevotella disiens FB035-09AN] Length = 841 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 13/109 (11%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT----- 87 ++ V A AGSGKT +L ++ L++ P +L LT T AA EM R+ ++++ Sbjct: 30 ASLVVAGAGSGKTRVLTYKIAYLMMCGVLPYRILALTFTNKAAKEMQSRIGQLVSHDDAK 89 Query: 88 -----AWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPG 129 + + IL AE K+ G + N + D S +R L+ TI+++ G Sbjct: 90 QLYMGTFHSVFSRILRAEADKL-GYERNFTIYDESDSRSLIKTIVKSLG 137 >gi|29839776|ref|NP_828882.1| exodeoxyribonuclease V, beta subunit [Chlamydophila caviae GPIC] gi|29834123|gb|AAP04760.1| exodeoxyribonuclease V, beta subunit [Chlamydophila caviae GPIC] Length = 1045 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 25/128 (19%) Query: 35 WVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 ++ A+AG+GKT + Q VLR LL +H +L +T T AA E+ R+ Sbjct: 18 FLEASAGTGKTFTIEQIVLRALLEGSVSHVENILAVTFTNAATNELKLRI---------- 67 Query: 93 SDEILSAEITKIQG--KKPNKS------DMSKARHLLITI---LETPGGLKVQTIHAFCE 141 + L + +I+ + P+KS D S + L + + L T + + TIH FC Sbjct: 68 -QDNLKQALCQIKSVLEDPSKSLPPYLKDTSNVKLLYMQVRNALATIDRMAIFTIHGFCN 126 Query: 142 AIMQQ-FP 148 ++QQ FP Sbjct: 127 YVLQQHFP 134 >gi|332139606|ref|YP_004425344.1| DNA helicase II [Alteromonas macleodii str. 'Deep ecotype'] gi|327549628|gb|AEA96346.1| DNA helicase II [Alteromonas macleodii str. 'Deep ecotype'] Length = 723 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 67/160 (41%), Gaps = 41/160 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P +A V A AGSGKT +LV R+ L+ + N P ++L +T Sbjct: 4 SRLLDELNDKQREAVAA--PLSNALVLAGAGSGKTRVLVHRIAWLMEVENIAPFSILAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ +S M ++ H Sbjct: 62 FTNKAAKEMRGRI----------------------------ESLMGRSLH---------- 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + + T H +++ EAN+ +F I D + +LI Sbjct: 84 NMWIGTFHGLAHRLLRAHHAEANLPENFQIIDSDDQYRLI 123 >gi|313835931|gb|EFS73645.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA2] gi|314927226|gb|EFS91057.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL044PA1] gi|314970659|gb|EFT14757.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA3] gi|328906126|gb|EGG25901.1| ATP-dependent DNA helicase PcrA [Propionibacterium sp. P08] Length = 810 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 DL + L A P V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 44 DLNEPQREAVLHAGSPV---LVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTNK 100 Query: 74 AAAEMSHRVLEII 86 AAAEM RV++++ Sbjct: 101 AAAEMKARVVDLV 113 >gi|170756184|ref|YP_001780091.1| recombination helicase AddA [Clostridium botulinum B1 str. Okra] gi|251764513|sp|B1IEN0|ADDA_CLOBK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|169121396|gb|ACA45232.1| ATP-dependent nuclease subunit A [Clostridium botulinum B1 str. Okra] Length = 1279 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 33/156 (21%) Query: 28 SDPTRSAWVSANAG--------SGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 +D R A + N +GKT +LVQR++ +L P LL +T T AAAA Sbjct: 7 TDEQRQAIFTKNCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAAA 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ + I S DE +++ + Q NKS+ + TI Sbjct: 67 EMRERIGDAI---SKGLDEDPESKVLRKQLTLLNKSN-------------------IMTI 104 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 H+FC +++ I +F I DE + + +EA Sbjct: 105 HSFCLQVIKNNFHTMEIDPNFRICDETEGILMKQEA 140 >gi|159468518|ref|XP_001692421.1| predicted protein [Chlamydomonas reinhardtii] gi|158278134|gb|EDP03899.1| predicted protein [Chlamydomonas reinhardtii] Length = 815 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 TK Q + D R+ + A AG+GKT L++R+L L+ P +LC+T T AAAE+ Sbjct: 133 TKGWQAVTGDLERAQLIIAGAGTGKTTTLIKRILYLIQEKRVPPRHILCITFTNKAAAEV 192 Query: 79 SHRV 82 R+ Sbjct: 193 RDRL 196 >gi|312869874|ref|ZP_07730014.1| ATP-dependent nuclease subunit A [Lactobacillus oris PB013-T2-3] gi|311094614|gb|EFQ52918.1| ATP-dependent nuclease subunit A [Lactobacillus oris PB013-T2-3] Length = 1386 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 22/153 (14%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78 T ++Q SD ++ VSA+AGSGKT +LV R + L+ A +L +T T AAA M Sbjct: 7 TPAQQQAISDRDQNIIVSASAGSGKTAVLVNRAVDLIKEGRATVDRMLLVTFTDAAAKNM 66 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 ++ + + E+ AE P D+ + + + + + TIHA Sbjct: 67 RDKIRQRM-------QEVAQAE--------PRLRDLMNEQVNRLAVAD------ISTIHA 105 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 FC +++++ + F + ++ + L++E Sbjct: 106 FCLKLIKRYYFLIGLDPQFRLLTDDTERLLLQE 138 >gi|289757034|ref|ZP_06516412.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis T85] gi|289712598|gb|EFD76610.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis T85] Length = 650 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 40/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ L+ A +L +T T AAAEM RV+ ++ Sbjct: 40 IVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVG------- 92 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 KAR++ ++ T H+ C I++ Q L + Sbjct: 93 --------------------EKARYMWVS-----------TFHSTCVRILRNQAALIEGL 121 Query: 154 TSHFAIADEEQSKKLIE 170 S+F+I D + S++L++ Sbjct: 122 NSNFSIYDADDSRRLLQ 138 >gi|226228582|ref|YP_002762688.1| exodeoxyribonuclease V beta subunit [Gemmatimonas aurantiaca T-27] gi|226091773|dbj|BAH40218.1| exodeoxyribonuclease V beta subunit [Gemmatimonas aurantiaca T-27] Length = 1210 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 24/159 (15%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHP-----STLLCLTHTKAAAAEMSHR 81 P + + A+AG+GKT + V+RLLL A P +L +T T AA E+ R Sbjct: 16 PPGISLIEASAGTGKTFNIAMSVVRLLLEQDAAGQPIVSGLGGILVVTFTNAATEELVTR 75 Query: 82 VLEIIT----AWSHLSDEILSAEITKIQ----GKKPNKSDMSKARHLLITILETPGGLKV 133 V ++ WS ++EI ++ G++P + ++A+ L + L V Sbjct: 76 VRRMLQLAHEVWSGALYAKSNSEIEILRELANGREPWAA--TRAQEALRAL----DALAV 129 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 TIH FC+ ++ +F LE+ + F++ + LIEEA Sbjct: 130 FTIHGFCKRVLDEFALESG--APFSMELLDDPTPLIEEA 166 >gi|312602470|ref|YP_004022315.1| exodeoxyribonuclease V subunit beta [Burkholderia rhizoxinica HKI 454] gi|312169784|emb|CBW76796.1| Exodeoxyribonuclease V beta chain (EC 3.1.11.5) [Burkholderia rhizoxinica HKI 454] Length = 1245 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 8/119 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV----LEIITAWS 90 + A+AG+GKT + LRLLL + +L +T TKAA AE+ R+ +++ A + Sbjct: 22 IEASAGTGKTWNICALYLRLLLEKDLQADQILVVTFTKAATAELHERIRARLMQLEQALA 81 Query: 91 H---LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 H L D ++ I ++ ++ +A + L + TIHAFC+ +Q+ Sbjct: 82 HGVALDDPFVTGLIGRLVDGDAPETATQRALKRIRRALHGFDQAAIHTIHAFCQRALQE 140 >gi|215426220|ref|ZP_03424139.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis T92] gi|289749473|ref|ZP_06508851.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis T92] gi|289690060|gb|EFD57489.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis T92] Length = 632 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 40/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ L+ A +L +T T AAAEM RV+ ++ Sbjct: 40 IVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVG------- 92 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 KAR++ ++ T H+ C I++ Q L + Sbjct: 93 --------------------EKARYMWVS-----------TFHSTCVRILRNQAALIEGL 121 Query: 154 TSHFAIADEEQSKKLIE 170 S+F+I D + S++L++ Sbjct: 122 NSNFSIYDADDSRRLLQ 138 >gi|54310114|ref|YP_131134.1| putative exodeoxyribonuclease V [Photobacterium profundum SS9] gi|46914553|emb|CAG21332.1| putative exodeoxyribonuclease V [Photobacterium profundum SS9] Length = 1227 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 26/152 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT + LRLLL + + T +L +T T+AA AE+ R+ Sbjct: 44 IEASAGTGKTFTIASLYLRLLLGHGNAETRHASELTVDQILVVTFTEAATAELRDRIRAR 103 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 +I +D +++ +T I+ D A +L+ + TIH F Sbjct: 104 IHDAQIAFRRGFSNDPVIAPLLTAIR-------DHKAAAQILLNAERQMDEAAIYTIHGF 156 Query: 140 CEAIMQQFPLEAN--ITSHFAIADEEQSKKLI 169 C+ ++ Q E+ + F + DE Q K L+ Sbjct: 157 CQRMLTQNAFESGSRFNNEF-VTDESQLKSLV 187 >gi|313202687|ref|YP_004041344.1| ATP-dependent DNA helicase pcra [Paludibacter propionicigenes WB4] gi|312442003|gb|ADQ78359.1| ATP-dependent DNA helicase PcrA [Paludibacter propionicigenes WB4] Length = 769 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 32/54 (59%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 ++ V A AGSGKT +L ++ LL PS++L LT T AA EM R+ ++ Sbjct: 23 ASLVIAGAGSGKTRVLTYKIAYLLKNGMAPSSILALTFTNKAAREMKERIAAMV 76 >gi|296158274|ref|ZP_06841106.1| UvrD/REP helicase [Burkholderia sp. Ch1-1] gi|295891610|gb|EFG71396.1| UvrD/REP helicase [Burkholderia sp. Ch1-1] Length = 708 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 33/59 (55%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT+ L RV L++ A P +L LT ++ AA EM RV I A Sbjct: 37 PPGALLVIAGAGSGKTNTLAHRVANLVVNGADPRRILLLTFSRRAALEMIRRVTRIAGA 95 >gi|199598402|ref|ZP_03211821.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus rhamnosus HN001] gi|258508491|ref|YP_003171242.1| ATP-dependent nuclease subunit A [Lactobacillus rhamnosus GG] gi|199590721|gb|EDY98808.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus rhamnosus HN001] gi|257148418|emb|CAR87391.1| ATP-dependent nuclease, subunit A [Lactobacillus rhamnosus GG] gi|259649801|dbj|BAI41963.1| ATP-dependent exonuclease subunit A [Lactobacillus rhamnosus GG] Length = 1236 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 17/153 (11%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEM 78 T S+Q + VSA+AGSGKT +LV+R++ ++L +A + +L +T T+AA +EM Sbjct: 5 TPSQQAAINHHGHDMLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAATSEM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 ++ + + L+A K ++ + RHL I K+ T+ A Sbjct: 65 RTKIQTALK-------QTLTA--------KRHELNAEDRRHLANQIAMVNAA-KISTLDA 108 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 F I+Q + ++ F + +E + +++E Sbjct: 109 FSLQIVQTYYYVIDLDPGFRLLTDETERYMLQE 141 >gi|323479631|gb|ADX79070.1| uvrD/REP helicase family protein [Enterococcus faecalis 62] Length = 606 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 77/198 (38%), Gaps = 64/198 (32%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T S+Q + S V+A GSGKT +L QR+ R+L +L LT + AA E++ Sbjct: 4 TNSQQEIVDYIDGSLLVTAGPGSGKTRVLTQRIARIL--ELKKGKVLALTFSNKAAEEIT 61 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV K +S H I KV+TIH+F Sbjct: 62 ERV----------------------------KKQLSVENHERI---------KVETIHSF 84 Query: 140 CEAIM----QQFPLEANIT------------------SHFAIADEE---QSKKLIEEAKK 174 C ++ Q LEA +T S + +++ + + IEE KK Sbjct: 85 CLDLVLNRGNQIGLEAGLTVIEDRNDKLEILKRAYFNSKMMLPEDKILHKELRAIEEHKK 144 Query: 175 STLASIMLDNNEELKKAF 192 + L ++NN E + F Sbjct: 145 NFLYPDNIENNSEFRDIF 162 >gi|322378864|ref|ZP_08053281.1| Putative ATP-DEPENDENT HELICASE [Helicobacter suis HS1] gi|321148674|gb|EFX43157.1| Putative ATP-DEPENDENT HELICASE [Helicobacter suis HS1] Length = 654 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Query: 19 QTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q SEQL A P V A+AG+GKT +V R+L LL + P +L LT T A+ E Sbjct: 3 QLNSEQLQAIKAPLGHNLVIASAGTGKTSTIVGRILHLLTSGIDPRQILLLTFTNKASQE 62 Query: 78 MSHRV 82 M R+ Sbjct: 63 MKERL 67 >gi|241668452|ref|ZP_04756030.1| DNA/RNA helicase superfamily I protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876985|ref|ZP_05249695.1| DNA and RNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843006|gb|EET21420.1| DNA and RNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 686 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 39/66 (59%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 ++++ D + A VSA AGSGKT L+ R+ L+ P+ +L L + K+A + + R+ Sbjct: 8 QKIITHDLDKHALVSAVAGSGKTQTLIARIEYLIDNKVPPNKILVLMYNKSAQLDFAERL 67 Query: 83 LEIITA 88 ++I A Sbjct: 68 KKVIKA 73 >gi|254392029|ref|ZP_05007220.1| ATP-dependent DNA helicase II [Streptomyces clavuligerus ATCC 27064] gi|294814551|ref|ZP_06773194.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] gi|326442941|ref|ZP_08217675.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] gi|197705707|gb|EDY51519.1| ATP-dependent DNA helicase II [Streptomyces clavuligerus ATCC 27064] gi|294327150|gb|EFG08793.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] Length = 825 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL HP +L +T T AA EM RV +++ + Sbjct: 91 IVAGAGSGKTRVLTHRIAHLLATRGVHPGQILAITFTNKAAGEMKERVEQLVGPRAQ--- 147 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + V T H+ C I+++ + T Sbjct: 148 -----------------------------------AMWVLTFHSACVRILRRESKKLGFT 172 Query: 155 SHFAIADEEQSKKLI 169 S F+I D SK+L+ Sbjct: 173 SSFSIYDAADSKRLM 187 >gi|293401242|ref|ZP_06645386.1| ATP-dependent helicase PcrA [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305368|gb|EFE46613.1| ATP-dependent helicase PcrA [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 759 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT ++ R+ L+ +P+ +L +T T AA EM RV Sbjct: 24 IIAGAGSGKTRVVTTRIAYLIEEMQVYPNKILAITFTNKAAKEMKERV------------ 71 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E + E+ K +++ TIH+FC ++++ LE Sbjct: 72 EGMLGEVAK--------------------------AVQISTIHSFCVRLLREDILEVGYP 105 Query: 155 SHFAIADEEQSKKLIEEAKK 174 +F I D + K ++ +A K Sbjct: 106 RNFTILDSDDQKSILRDAYK 125 >gi|91784748|ref|YP_559954.1| putative DNA helicase [Burkholderia xenovorans LB400] gi|91688702|gb|ABE31902.1| Putative DNA helicase [Burkholderia xenovorans LB400] Length = 708 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 33/59 (55%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT+ L RV L++ A P +L LT ++ AA EM RV I A Sbjct: 37 PPGALLVIAGAGSGKTNTLAHRVANLVVNGADPRRILLLTFSRRAALEMIRRVTRIAGA 95 >gi|302187828|ref|ZP_07264501.1| DNA-dependent helicase II [Pseudomonas syringae pv. syringae 642] Length = 727 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM HR+ +++ Sbjct: 29 VLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRHRIEQLM 80 >gi|168177782|ref|ZP_02612446.1| recombination helicase AddA [Clostridium botulinum NCTC 2916] gi|182671018|gb|EDT82992.1| recombination helicase AddA [Clostridium botulinum NCTC 2916] Length = 1279 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 25/132 (18%) Query: 44 KTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100 KT +LVQR++ +L P LL +T T AAAAEM R+ + I S DE ++ Sbjct: 31 KTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAAAEMRERIGDAI---SKGLDEDPESK 87 Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160 + + Q NKS+ + TIH+FC +++ I +F I Sbjct: 88 VLRKQLTLLNKSN-------------------IMTIHSFCLQVIKNNLHTMEIDPNFRIC 128 Query: 161 DEEQSKKLIEEA 172 DE + + +EA Sbjct: 129 DETEGILMKQEA 140 >gi|167627899|ref|YP_001678399.1| DNA/RNA helicase superfamily I protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597900|gb|ABZ87898.1| DNA and RNA helicase superfamily I protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 686 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 39/66 (59%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 ++++ D + A VSA AGSGKT L+ R+ L+ P+ +L L + K+A + + R+ Sbjct: 8 QKIITHDLDKHALVSAVAGSGKTQTLIARIEYLIDNKVPPNKILVLMYNKSAQLDFAERL 67 Query: 83 LEIITA 88 ++I A Sbjct: 68 KKVIKA 73 >gi|62184654|ref|YP_219439.1| putative UvrD/REP helicase [Chlamydophila abortus S26/3] gi|62147721|emb|CAH63465.1| putative UvrD/REP helicase [Chlamydophila abortus S26/3] Length = 1045 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 11/121 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLE-IITAWSH 91 ++ A+AG+GKT + Q VLR LL +H +L +T T AA E+ R+ E + A + Sbjct: 18 FLEASAGTGKTFTIEQIVLRALLEGSVSHVENILIVTFTNAATNELKLRISENLKQAGAQ 77 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITI---LETPGGLKVQTIHAFCEAIMQQ-F 147 L I E Q P + L + + L T + + TIH FC ++QQ F Sbjct: 78 LKSAITDPE----QPLPPYLHHPCDVKLLYMQVRNALATIDRMAIFTIHGFCNYVLQQHF 133 Query: 148 P 148 P Sbjct: 134 P 134 >gi|124265321|ref|YP_001019325.1| putative ATP-dependent DNA helicase rep protein [Methylibium petroleiphilum PM1] gi|124258096|gb|ABM93090.1| putative ATP-dependent DNA helicase rep protein [Methylibium petroleiphilum PM1] Length = 693 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 31/53 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++ ++ RLL A PS + +T T AAAEM R ++ A Sbjct: 13 VLAGAGSGKTRVITHKIARLLEAGLAPSQIAAITFTNKAAAEMRERAKALVGA 65 >gi|309789677|ref|ZP_07684258.1| UvrD/REP helicase [Oscillochloris trichoides DG6] gi|308228413|gb|EFO82060.1| UvrD/REP helicase [Oscillochloris trichoides DG6] Length = 641 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 33/61 (54%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 P V A AGSGKT +L R+ L+ A PS +L LT T AA EM R+ + + A Sbjct: 18 PVGPVLVRAGAGSGKTRVLTLRIAHLISIGAKPSQILALTFTNKAAREMRERLRKQLGAG 77 Query: 90 S 90 + Sbjct: 78 A 78 >gi|221369980|ref|YP_002521076.1| ATP-dependent DNA helicase [Rhodobacter sphaeroides KD131] gi|221163032|gb|ACM04003.1| ATP-dependent DNA helicase [Rhodobacter sphaeroides KD131] Length = 679 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 33/59 (55%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 + P V A AGSGKT L RV LL+ A P +L +T ++ AAAE++ RV I Sbjct: 21 GTQPAPPLLVIAGAGSGKTSTLAHRVAHLLVKGADPRRILLMTFSRRAAAELTRRVERI 79 >gi|330998558|ref|ZP_08322378.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841] gi|329568156|gb|EGG49975.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841] Length = 819 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 59/149 (39%), Gaps = 41/149 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT +L ++ LL P +L LT T AA EM R+ ++ H Sbjct: 30 VIAGAGSGKTRVLTYKIAYLLEQGYKPWNILALTFTNKAAREMKERIARLV---GH---- 82 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 E GL + T H+ I+++ E +S Sbjct: 83 ------------------------------ELAAGLWMGTFHSVFSRILRKEADEIGFSS 112 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDN 184 HF I D+ S+ LI K+ + + LD+ Sbjct: 113 HFTIYDQADSRNLI----KTVIREMGLDD 137 >gi|320535504|ref|ZP_08035607.1| UvrD/REP helicase [Treponema phagedenis F0421] gi|320147643|gb|EFW39156.1| UvrD/REP helicase [Treponema phagedenis F0421] Length = 1138 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKA 73 D I Q A+ +A +SA AGSGKT +L R + L++ P ++ LT TK Sbjct: 3 DFIESLNQNQKAAALIDVNAVISAGAGSGKTRVLTARYIHLVINKKIPIEKIVALTFTKK 62 Query: 74 AAAEMSHRVL-EIITAWS 90 AAAEM R+ E++T S Sbjct: 63 AAAEMYQRIYRELLTCDS 80 >gi|289761084|ref|ZP_06520462.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis GM 1503] gi|289708590|gb|EFD72606.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis GM 1503] Length = 702 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 40/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ L+ A +L +T T AAAEM RV+ ++ Sbjct: 40 IVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVG------- 92 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 KAR++ ++ T H+ C I++ Q L + Sbjct: 93 --------------------EKARYMWVS-----------TFHSTCVRILRNQAALIEGL 121 Query: 154 TSHFAIADEEQSKKLIE 170 S+F+I D + S++L++ Sbjct: 122 NSNFSIYDADDSRRLLQ 138 >gi|206890945|ref|YP_002248960.1| UvrD/REP helicase domain protein, putative [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742883|gb|ACI21940.1| UvrD/REP helicase domain protein, putative [Thermodesulfovibrio yellowstonii DSM 11347] Length = 1015 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 6/134 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEMSHRVLEIITAWSH 91 + A+AGSGKT L +R + LL++ P+ +L +T + A+ EM R++E + + Sbjct: 15 LKASAGSGKTTALTERFVYFLLSDDIPNNSLKNILAITFSNNASYEMKDRIIEWLKNL-Y 73 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 +E ++++ P + + KA +L IL +V+TI +F ++ + ++ Sbjct: 74 CKEENSLNRLSELLSLSPEELSL-KAGQILDEILNNYSDFQVKTIDSFMTSVFKASAIDF 132 Query: 152 NITSHFAIADEEQS 165 + F I QS Sbjct: 133 DYNPDFEILMNNQS 146 >gi|303242289|ref|ZP_07328776.1| UvrD/REP helicase [Acetivibrio cellulolyticus CD2] gi|302590199|gb|EFL59960.1| UvrD/REP helicase [Acetivibrio cellulolyticus CD2] Length = 706 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 61/183 (33%) Query: 34 AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A V A GSGKT ++ R+ L+L P +L LT KAA AEM +R Sbjct: 29 ALVLAGPGSGKTTVITARIACLILECGVKPENILTLTFNKAARAEMEYR----------- 77 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 KI G +D+ G + T+H+FC+ I++ + Sbjct: 78 --------FNKIYG-----TDIG-------------GKVHFATMHSFCKRIVRDY----- 106 Query: 153 ITSHFAIADEEQSK--KLIEEAKKSTLASIMLDNNEELKKAFYEILEIS--NDEDIETLI 208 + Q K K+IE +K + +N ++ + Y+ + S ND+++E LI Sbjct: 107 --------ENRQGKWLKMIEGEEK------IEENKRKIIRGLYQQINNSKINDDELENLI 152 Query: 209 SDI 211 ++I Sbjct: 153 NEI 155 >gi|301057782|ref|ZP_07198851.1| UvrD/REP helicase [delta proteobacterium NaphS2] gi|300448093|gb|EFK11789.1| UvrD/REP helicase [delta proteobacterium NaphS2] Length = 719 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 30/50 (60%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT LV RV RL+ P +L LT T+ +A EM +R E+ Sbjct: 28 VIAGAGSGKTRTLVYRVARLVETGVPPEAILLLTFTRKSAQEMLNRASEL 77 >gi|294660411|ref|NP_853162.2| DNA helicase II [Mycoplasma gallisepticum str. R(low)] gi|284812070|gb|AAP56730.2| DNA helicase II [Mycoplasma gallisepticum str. R(low)] gi|284930644|gb|ADC30583.1| DNA helicase II [Mycoplasma gallisepticum str. R(high)] Length = 751 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 69/172 (40%), Gaps = 48/172 (27%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +V A AG+GKT +L R+ L+ P +L +T T AA EM HR+ Sbjct: 24 FVVAGAGTGKTKVLTSRIAYLIEHFKIPEYKILAITFTNKAAKEMQHRL----------- 72 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN- 152 +++L+ E T++ +T H FC ++++ E N Sbjct: 73 EKLLNKEKTQVS---------------------------FRTFHGFCAQVLRE---EVNN 102 Query: 153 ---ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 + F I DE KLIE+ KS + KK +++ I ND Sbjct: 103 VDRLNDRFNILDEVDQAKLIEDLLKSQKYEYYYSQYTDFKKN--KVMSIIND 152 >gi|154487471|ref|ZP_02028878.1| hypothetical protein BIFADO_01324 [Bifidobacterium adolescentis L2-32] gi|154083989|gb|EDN83034.1| hypothetical protein BIFADO_01324 [Bifidobacterium adolescentis L2-32] Length = 896 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 38/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A AGSGKT +L +R+ LL S++L +T T AAAEM R++ ++ Sbjct: 49 IGAGAGSGKTRVLTRRIAWLLAHGFWASSILAITFTNKAAAEMRERLVTLVG-------- 100 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +A H+ I+ T H+ C I+++ E + S Sbjct: 101 -------------------PEAEHMWIS-----------TFHSACVRILRRDGKEIGLKS 130 Query: 156 HFAIADEEQSKKLIE 170 F+I D S++L++ Sbjct: 131 GFSIYDTADSERLVK 145 >gi|325066848|ref|ZP_08125521.1| ATP-dependent DNA helicase PcrA [Actinomyces oris K20] Length = 649 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 52/135 (38%), Gaps = 43/135 (31%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT +L R+ L+ A P +L +T T AAAEM RV Sbjct: 21 AGAGSGKTRVLTHRIAHLIATGRARPGEILAITFTNKAAAEMRERV-------------- 66 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIHAFCEAIMQQFPLEANIT 154 T L P G + V T H+ C I+++ A + Sbjct: 67 --------------------------TALVGPAGERMWVSTFHSACVRILRREHEAAGLR 100 Query: 155 SHFAIADEEQSKKLI 169 S F+I D S +LI Sbjct: 101 STFSIYDAADSTRLI 115 >gi|78045388|ref|YP_361638.1| UvrD/Rep-family ATP-dependent DNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78033892|emb|CAJ19891.1| UvrD/Rep-family ATP-dependent DNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1103 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 37/66 (56%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 ++ T ++ A P R++ V A G+GKT L+ R+ LL A P+ LL LT + AA Sbjct: 198 LTPTDEQRDAARSPVRTSLVVAGPGTGKTATLLMRIEHLLANGAKPAELLVLTFSNRAAR 257 Query: 77 EMSHRV 82 E+ R+ Sbjct: 258 ELVDRL 263 >gi|115524887|ref|YP_781798.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53] gi|115518834|gb|ABJ06818.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53] Length = 700 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 31/50 (62%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT+ L RV LL+ A P LL +T ++ AA+EM RV I Sbjct: 48 VIAGAGSGKTNTLAHRVAHLLVHGADPRRLLLMTFSRRAASEMIRRVERI 97 >gi|149908513|ref|ZP_01897175.1| DNA helicase II [Moritella sp. PE36] gi|149808347|gb|EDM68284.1| DNA helicase II [Moritella sp. PE36] Length = 722 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 39/142 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P S + A AGSGKT +LV R+ L+ + P +LL +T T AAAEM RV Sbjct: 21 PQSSMLILAGAGSGKTRVLVHRLAWLMQVEQCSPYSLLAVTFTNKAAAEMRGRV------ 74 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 D++L +G++ G+ + T H +++ Sbjct: 75 -----DKLL-------EGRQQ--------------------GMWIGTFHGIAHRLLRAHH 102 Query: 149 LEANITSHFAIADEEQSKKLIE 170 L+A + + F I D + +L++ Sbjct: 103 LDAGLPAEFQIIDSDDQLRLLK 124 >gi|315125768|ref|YP_004067771.1| UvrD family helicase [Pseudoalteromonas sp. SM9913] gi|315014282|gb|ADT67620.1| UvrD family helicase [Pseudoalteromonas sp. SM9913] Length = 638 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 16 LISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 +IS + S+Q + +SA + A+AGSGKT +L +R+ R +L N +L LT T A Sbjct: 1 MISLSPSQQEIVEFDIKSAIQILASAGSGKTRVLTERI-RYILNNTKKDKVLALTFTNKA 59 Query: 75 AAEMSHRVLEII 86 A EM R+ + + Sbjct: 60 AQEMQERLADFV 71 >gi|118475031|ref|YP_892129.1| UvrD/REP helicase [Campylobacter fetus subsp. fetus 82-40] gi|118414257|gb|ABK82677.1| UvrD/REP helicase [Campylobacter fetus subsp. fetus 82-40] Length = 679 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 17 ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S+ EQ A+ PT V A+AG+GKT +V R+ LL P +L LT T AA Sbjct: 3 LSKLNREQYTAATAPTGYNLVIASAGTGKTSTIVARIAHLLNLGMKPERILLLTFTNKAA 62 Query: 76 AEMSHRVLEIITA 88 +EM R+ +A Sbjct: 63 SEMIDRLSNYFSA 75 >gi|323702799|ref|ZP_08114458.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum nigrificans DSM 574] gi|323532187|gb|EGB22067.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum nigrificans DSM 574] Length = 721 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ ++L P +L +T T AAAEM RV ++ Sbjct: 24 VLAGAGSGKTRVLTHRIAKILEQGVPPYNILAITFTNKAAAEMKSRVENLV 74 >gi|116072446|ref|ZP_01469713.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp. BL107] gi|116064968|gb|EAU70727.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp. BL107] Length = 1217 Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 9/124 (7%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM----SHRVLEIITAWS 90 + A+AG+GKT L LRL+ A+P TLL +T+T+AAA E+ R+ + + Sbjct: 23 LEASAGTGKTFALAHLTLRLITEAAYPLETLLVVTYTEAAAEELRSRIGQRLQQALVGLE 82 Query: 91 HLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 L +E + + + SD L+ LE + TIH FC +++ Sbjct: 83 QLENETFPSAPDPVMAAWWEQCMASSDRRIRIRRLLVALEQLDRADIATIHGFCRRSLRR 142 Query: 147 FPLE 150 L+ Sbjct: 143 LALD 146 >gi|74317324|ref|YP_315064.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC 25259] gi|74056819|gb|AAZ97259.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC 25259] Length = 702 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 32/51 (62%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT++L RV L+ A P+ +L LT ++ AA EM RV I+ Sbjct: 47 VIAGAGSGKTNVLAHRVAHLVAHGADPAAILLLTFSRRAADEMVRRVERIL 97 >gi|88855836|ref|ZP_01130499.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1] gi|88815160|gb|EAR25019.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1] Length = 799 Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 S + A AGSGKT +L +R+ LL + A PS +L +T T AAAEM RV I+ Sbjct: 41 SLLIVAGAGSGKTSVLTRRIAGLLRSQEAWPSQILAITFTNKAAAEMRERVAAIV 95 >gi|161525045|ref|YP_001580057.1| UvrD/REP helicase [Burkholderia multivorans ATCC 17616] gi|189350212|ref|YP_001945840.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Burkholderia multivorans ATCC 17616] gi|160342474|gb|ABX15560.1| UvrD/REP helicase [Burkholderia multivorans ATCC 17616] gi|189334234|dbj|BAG43304.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Burkholderia multivorans ATCC 17616] Length = 786 Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|33240542|ref|NP_875484.1| ATP-dependent exoDNAse beta subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238070|gb|AAQ00137.1| ATP-dependent exoDNAse beta subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 1256 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 16/149 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV----------LE 84 + A+AG+GKT+ L VLRLL P + +L ++ TKA A+E+ R+ LE Sbjct: 20 LEASAGTGKTYSLAHLVLRLLTEKGCPINKILVISFTKATASEIKARISSRLVLALKGLE 79 Query: 85 IITAWS--HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 T S +D++++ + + K ++S + LLI LE + TIH FC Sbjct: 80 SYTPKSLASCTDQVMNEWL---ESKVIDESTRLQWASLLIKALENIDSADITTIHGFCSR 136 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEE 171 +++ ++ EE +K+LI E Sbjct: 137 NLKREAIDVGNNIETEALSEEDNKELILE 165 >gi|120536959|ref|YP_957017.1| UvrD/REP helicase [Marinobacter aquaeolei VT8] gi|120326793|gb|ABM21102.1| UvrD/REP helicase [Marinobacter aquaeolei VT8] Length = 715 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 42/66 (63%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 +S T+ ++ +A+ + V A AGSGKT LVQRV RL+ N +P +++ +T ++ AA Sbjct: 4 VSLTQQQEKIANHVDGALIVLAGAGSGKTATLVQRVGRLIDQNINPRSIMLVTFSRKAAK 63 Query: 77 EMSHRV 82 E+ R+ Sbjct: 64 EIKVRL 69 >gi|295677083|ref|YP_003605607.1| UvrD/REP helicase [Burkholderia sp. CCGE1002] gi|295436926|gb|ADG16096.1| UvrD/REP helicase [Burkholderia sp. CCGE1002] Length = 795 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL+S EQ A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 13 DLLSNLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGLASPATVLAVTFTN 72 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 73 KAAREMMARL 82 >gi|221214933|ref|ZP_03587901.1| DNA helicase II [Burkholderia multivorans CGD1] gi|221165160|gb|EED97638.1| DNA helicase II [Burkholderia multivorans CGD1] Length = 786 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|209519276|ref|ZP_03268077.1| UvrD/REP helicase [Burkholderia sp. H160] gi|209500288|gb|EEA00343.1| UvrD/REP helicase [Burkholderia sp. H160] Length = 797 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL+S EQ A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 13 DLLSNLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGLASPATVLAVTFTN 72 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 73 KAAREMMARL 82 >gi|188995178|ref|YP_001929430.1| ATP-dependent DNA helicase [Porphyromonas gingivalis ATCC 33277] gi|188594858|dbj|BAG33833.1| ATP-dependent DNA helicase [Porphyromonas gingivalis ATCC 33277] Length = 765 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 24/49 (48%), Positives = 31/49 (63%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A V A AGSGKT +LV ++L L+ + P+ L+ LT T AA EM RV Sbjct: 24 ALVIAGAGSGKTRVLVYKLLHLIRSGYDPARLMALTFTNKAAKEMKERV 72 >gi|189424132|ref|YP_001951309.1| UvrD/REP helicase [Geobacter lovleyi SZ] gi|189420391|gb|ACD94789.1| UvrD/REP helicase [Geobacter lovleyi SZ] Length = 1048 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A G+GKT IL R+ +LL+ +A P ++LCLT+T A M +R+L+ I Sbjct: 32 VIAGPGTGKTEILAARIANILLSTDATPESILCLTYTDAGTVAMRNRLLQFI 83 >gi|262193706|ref|YP_003264915.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365] gi|262077053|gb|ACY13022.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365] Length = 688 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++ R++RLL + P + LT T AA EM RV Sbjct: 26 VLAGAGSGKTRVITYRIVRLLRSGIPPQAIAALTFTNRAAEEMRERV 72 >gi|188585469|ref|YP_001917014.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350156|gb|ACB84426.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 1161 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 23/155 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT LV R++ +++ + ++ +T T+ AAAE+ R + L + Sbjct: 27 VEAGAGSGKTRSLVDRMVAQVVSGRYRVDEIVAITFTRKAAAELRERF------QNRLEE 80 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITI-LETPGGLKVQTIHAFCEAIMQQFPLEANI 153 E + D S I I L G + TIH+F ++++ P+EA + Sbjct: 81 EY--------------QKDYSPEVKDNIEIALRNIEGTFLGTIHSFAANLLRERPVEAGL 126 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 F DE +S + EE + L + L N E+L Sbjct: 127 DPEFQELDELESAIMEEEVFEEYLLYVRL-NREDL 160 >gi|325978250|ref|YP_004287966.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178178|emb|CBZ48222.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 609 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 42/157 (26%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 Q A D + V A GSGKT +L + + LL A P L CLT+++ AA E + R+ Sbjct: 19 QKAAFDSQSNTVVLAGPGSGKTTVLTLKAMHLLNGVIAEPRGLACLTYSREAAREFTERL 78 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-E 141 E+ + + ++ + T+H+FC Sbjct: 79 KEL---------------------------GLVRGNNIFLG-----------TVHSFCLT 100 Query: 142 AIMQQFP--LEANITSHFAIADEEQSKKLIEEAKKST 176 I+ +F NI + IA E+Q KL E AKK+ Sbjct: 101 EILGKFCDVYSLNIPTPIKIASEKQRAKLFEIAKKNV 137 >gi|306831339|ref|ZP_07464499.1| UvrD/REP helicase subfamily [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426575|gb|EFM29687.1| UvrD/REP helicase subfamily [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 609 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 42/157 (26%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 Q A D + V A GSGKT +L + + LL A P L CLT+++ AA E + R+ Sbjct: 19 QKAAFDSQSNTVVLAGPGSGKTTVLTLKAMHLLNGVIAEPRGLACLTYSREAAREFTERL 78 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-E 141 E+ + + ++ + T+H+FC Sbjct: 79 KEL---------------------------GLVRGNNIFLG-----------TVHSFCLT 100 Query: 142 AIMQQFP--LEANITSHFAIADEEQSKKLIEEAKKST 176 I+ +F NI + IA E+Q KL E AKK+ Sbjct: 101 EILGKFCDVYSLNIPTPIKIASEKQRAKLFEIAKKNV 137 >gi|221197704|ref|ZP_03570750.1| DNA helicase II [Burkholderia multivorans CGD2M] gi|221204738|ref|ZP_03577755.1| DNA helicase II [Burkholderia multivorans CGD2] gi|221175595|gb|EEE08025.1| DNA helicase II [Burkholderia multivorans CGD2] gi|221181636|gb|EEE14037.1| DNA helicase II [Burkholderia multivorans CGD2M] Length = 786 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|260909824|ref|ZP_05916516.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260636055|gb|EEX54053.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 1627 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAAAEMSHR 81 +Q++ TR V+A GSGKT +LV ++ LLL + LL LT ++AAA E R Sbjct: 1079 KQIITDKDTRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLLMLTFSRAAATEFKQR 1138 Query: 82 VLEIITAWSHL 92 +++++ +H Sbjct: 1139 LMKLVGNAAHF 1149 >gi|261414687|ref|YP_003248370.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371143|gb|ACX73888.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325603|gb|ADL24804.1| ATP-dependent DNA helicase, UvrD/REP family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 803 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Query: 18 SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 S+ EQL A + T V A AGSGKT L R L L+ P+ +LC+T T AA Sbjct: 19 SRLDKEQLEAVETTEGYVRVVAGAGSGKTRTLTHRYLYLVKEMGISPANILCVTFTNKAA 78 Query: 76 AEMSHRVLEII 86 AEM R+ I+ Sbjct: 79 AEMKKRIRSIL 89 >gi|168181307|ref|ZP_02615971.1| ATP-dependent nuclease subunit A [Clostridium botulinum Bf] gi|237793761|ref|YP_002861313.1| ATP-dependent nuclease subunit A [Clostridium botulinum Ba4 str. 657] gi|259710033|sp|C3L047|ADDA_CLOB6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|182675388|gb|EDT87349.1| ATP-dependent nuclease subunit A [Clostridium botulinum Bf] gi|229262225|gb|ACQ53258.1| ATP-dependent nuclease subunit A [Clostridium botulinum Ba4 str. 657] Length = 1279 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 33/156 (21%) Query: 28 SDPTRSAWVSANAG--------SGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 +D R A + N +GKT +LVQR++ +L P LL +T T AAAA Sbjct: 7 TDEQRQAIFTKNCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAAA 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ + I S DE +++ + Q NKS+ + TI Sbjct: 67 EMRERIGDAI---SKGLDEDPESKVLRKQLTLLNKSN-------------------IMTI 104 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 H+FC +++ I +F I DE + + +EA Sbjct: 105 HSFCLQVIKNNFHTIEIDPNFRICDETEGILMKQEA 140 >gi|163839113|ref|YP_001623518.1| DNA helicase II [Renibacterium salmoninarum ATCC 33209] gi|162952589|gb|ABY22104.1| DNA helicase II [Renibacterium salmoninarum ATCC 33209] Length = 797 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ LL AHP +L +T T AAAEM R+ +I Sbjct: 51 IVAGAGSGKTRVLSHRIAYLLATGRAHPGQILAITFTNKAAAEMRERIAALI 102 >gi|45656320|ref|YP_000406.1| DNA helicase II [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599554|gb|AAS69043.1| DNA helicase II [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 433 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAA 75 + + ++Q + ++ TR V A AGSGKT +V + R+L+ N P ++L LT ++ AA Sbjct: 5 VQYSSAQQKVINENTRFVQVVAAAGSGKTSTMVGIIERILVENLFPKESVLVLTFSRKAA 64 Query: 76 AEMSHRVLEI 85 E+S+R+ ++ Sbjct: 65 IEISNRIQKV 74 >gi|329124082|ref|ZP_08252629.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Haemophilus aegyptius ATCC 11116] gi|327467507|gb|EGF13005.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Haemophilus aegyptius ATCC 11116] Length = 727 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ +T Sbjct: 5 SELLDGLNDKQREAVAA--PLGNRLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62 Query: 70 HTKAAAAEMSHRV 82 T AAAEM HR+ Sbjct: 63 FTNKAAAEMRHRI 75 >gi|323491621|ref|ZP_08096800.1| exodeoxyribonuclease V [Vibrio brasiliensis LMG 20546] gi|323314197|gb|EGA67282.1| exodeoxyribonuclease V [Vibrio brasiliensis LMG 20546] Length = 1205 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 23/133 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT + LRLLL + P T +L +T T+AA AE+ R+ Sbjct: 23 IEASAGTGKTFTIAGLYLRLLLGHGSPETKHQVPLTVDQILVVTFTEAATAELRDRIRAR 82 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + A D ++ + ++ SD +A +L+ V TIH F Sbjct: 83 IHDARLAFARGQSGDPVIQPLLEEV-------SDHKQAADILLQAERQMDEAAVYTIHGF 135 Query: 140 CEAIMQQFPLEAN 152 C+ ++ Q E+ Sbjct: 136 CQRMLTQNAFESG 148 >gi|226947672|ref|YP_002802763.1| ATP-dependent nuclease subunit A [Clostridium botulinum A2 str. Kyoto] gi|254802143|sp|C1FSA8|ADDA_CLOBJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|226844297|gb|ACO86963.1| ATP-dependent nuclease subunit A [Clostridium botulinum A2 str. Kyoto] Length = 1279 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 33/156 (21%) Query: 28 SDPTRSAWVSANAG--------SGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 +D R A + N +GKT +LVQR++ +L P LL +T T AAAA Sbjct: 7 TDEQRQAIFTKNCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAAA 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ + I S DE +++ + Q NKS+ + TI Sbjct: 67 EMRERIGDAI---SKGLDEDPESKVLRKQLTLLNKSN-------------------IMTI 104 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 H+FC +++ I +F I DE + + +EA Sbjct: 105 HSFCLQVIKNNFHTIEIDPNFRICDETEGILMKQEA 140 >gi|134295512|ref|YP_001119247.1| ATP-dependent DNA helicase UvrD [Burkholderia vietnamiensis G4] gi|134138669|gb|ABO54412.1| ATP-dependent DNA helicase UvrD [Burkholderia vietnamiensis G4] Length = 787 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|126664590|ref|ZP_01735574.1| DNA-dependent ATPase I and helicase II [Marinobacter sp. ELB17] gi|126630916|gb|EBA01530.1| DNA-dependent ATPase I and helicase II [Marinobacter sp. ELB17] Length = 721 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIIT 87 V A AGSGKT +LV R+ + N P+T LL +T T AA EM HR+ E++ Sbjct: 27 VLAGAGSGKTRVLVHRMAWQMQVNRVPATGLLAVTFTNKAAKEMRHRIEEMMN 79 >gi|254252587|ref|ZP_04945905.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158] gi|124895196|gb|EAY69076.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158] Length = 786 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|325971393|ref|YP_004247584.1| UvrD/REP helicase [Spirochaeta sp. Buddy] gi|324026631|gb|ADY13390.1| UvrD/REP helicase [Spirochaeta sp. Buddy] Length = 650 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 39/164 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 ++Q + ++ P R+ V+A AGSGKT ++ R + LL LT T A Sbjct: 3 LNQQQMAAVVYDGPKRNILVNAGAGSGKTRTIIARAAHRITQGTQADRLLVLTFTNRVAQ 62 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ HR L+ E+ SA G+ +++ T Sbjct: 63 ELRHR----------LAHEVGSA------GES----------------------VQMGTF 84 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 HAFC +M P I S +I D + L+ +KS + ++ Sbjct: 85 HAFCLKVMSSLPKSFAI-SGLSIIDSDDQDNLMGMVRKSLIKNL 127 >gi|313665602|ref|YP_004047473.1| ATP-dependent DNA helicase PcrA [Mycoplasma leachii PG50] gi|312949842|gb|ADR24438.1| putative ATP-dependent DNA helicase PcrA [Mycoplasma leachii PG50] Length = 722 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 47/172 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P R + A AGSGKT ++ ++ L+ N PS +L +T T AA EM RVL+I Sbjct: 24 PVR---IIAGAGSGKTRVITTKIAYLIEKQNIDPSRILAVTFTNKAAKEMKERVLQI--- 77 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 N S ++P + T H++C +++ Sbjct: 78 --------------------TNNS------------FKSPF---ISTFHSWCSKVLRIDG 102 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL---KKAFYEILE 197 + F I D + K++I+ A K ++I L+ N++ KK Y+I E Sbjct: 103 KHIGLEDKFLIIDSDDQKRIIKSALKE--SNIELNENDKKTFDKKILYKIKE 152 >gi|288905265|ref|YP_003430487.1| ATP-dependent DNA helicase [Streptococcus gallolyticus UCN34] gi|288731991|emb|CBI13556.1| putative ATP-dependent DNA helicase [Streptococcus gallolyticus UCN34] Length = 609 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 42/157 (26%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 Q A D + V A GSGKT +L + + LL A P L CLT+++ AA E + R+ Sbjct: 19 QKAAFDSQSNTVVLAGPGSGKTTVLTLKAMHLLNGVIAEPRGLACLTYSREAAREFTERL 78 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC-E 141 E+ + + ++ + T+H+FC Sbjct: 79 KEL---------------------------GLVRGNNIFLG-----------TVHSFCLT 100 Query: 142 AIMQQFP--LEANITSHFAIADEEQSKKLIEEAKKST 176 I+ +F NI + IA E+Q KL E AKK+ Sbjct: 101 EILGKFCDVYSLNIPTPIKIASEKQRAKLFEIAKKNV 137 >gi|269798688|ref|YP_003312588.1| UvrD/REP helicase [Veillonella parvula DSM 2008] gi|269095317|gb|ACZ25308.1| UvrD/REP helicase [Veillonella parvula DSM 2008] Length = 862 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 40/184 (21%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79 + +Q + + ++ + A+AG+GKT+ L RV L+ A +LC+T T AA EM Sbjct: 5 REQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGGYAKAENILCMTFTNKAANEMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ ++ + P K+ ++V T H+F Sbjct: 65 GRIQSLVGS--------------------PAKA------------------VEVSTFHSF 86 Query: 140 CEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C I+QQ + + I DEE K+L E + L + N + K + + E Sbjct: 87 CFFILQQEGKRNETLYTDVTIFDEEDCKELSEPYRPGKLREMSFANVIAMVKEYRSLYEF 146 Query: 199 SNDE 202 +D+ Sbjct: 147 YSDD 150 >gi|255037536|ref|YP_003088157.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053] gi|254950292|gb|ACT94992.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053] Length = 755 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 H++ + +++ + E +L + + A AGSGKT +L R+ RL+ P +L LT Sbjct: 3 HNDYLSTLNEPQREAVLHGNG--PLMIIAGAGSGKTRVLTYRIARLIETGVDPFRILSLT 60 Query: 70 HTKAAAAEMSHRV 82 T A+ EM R+ Sbjct: 61 FTNKASGEMRSRI 73 >gi|157736816|ref|YP_001489499.1| ATP-dependent DNA helicase UvrD [Arcobacter butzleri RM4018] gi|157698670|gb|ABV66830.1| ATP-dependent DNA helicase, UvrD/Rep family [Arcobacter butzleri RM4018] Length = 681 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 1/67 (1%) Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S EQL A+ + + A+AG+GKT +V R+ LL + +P +L LT T AA Sbjct: 3 LSNLNQEQLQAATCHQGFNLIIASAGTGKTSTIVGRIAYLLNSGINPKEILLLTFTNKAA 62 Query: 76 AEMSHRV 82 AEM +RV Sbjct: 63 AEMINRV 69 >gi|163750873|ref|ZP_02158107.1| exodeoxyribonuclease V, beta subunit [Shewanella benthica KT99] gi|161329431|gb|EDQ00426.1| exodeoxyribonuclease V, beta subunit [Shewanella benthica KT99] Length = 1249 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 18/144 (12%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVL-EII 86 S + A+AG+GKT+ + +RLLL + L C +T T AA E+ R+ +I Sbjct: 33 SRLIEASAGTGKTYTIAGLYVRLLLGHGIVKPLTCQQILVVTFTNAATGELRDRIRNKIQ 92 Query: 87 TAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 A+ H DE+L++ + P +S+ A L L++ + TIH FC+ Sbjct: 93 LAYRHFIGIDTGDELLAS----LHSATP-ESERPLALKRLDLALKSLDEASIFTIHGFCQ 147 Query: 142 AIMQQFPLEANI--TSHFAIADEE 163 I+ E+++ S F + D E Sbjct: 148 RILADMAFESSLLFESEFTLDDSE 171 >gi|325269817|ref|ZP_08136427.1| ATP-dependent DNA helicase PcrA [Prevotella multiformis DSM 16608] gi|324987790|gb|EGC19763.1| ATP-dependent DNA helicase PcrA [Prevotella multiformis DSM 16608] Length = 843 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 10/80 (12%) Query: 19 QTKSEQLLAS--DPTRSA--------WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 Q + E+LL++ + R A V A AGSGKT +L ++ LL P +L L Sbjct: 4 QEREEELLSALNESQRKAVEYCAGPSLVIAGAGSGKTRVLTYKIAYLLEKGLKPWNILAL 63 Query: 69 THTKAAAAEMSHRVLEIITA 88 T T AA EM R+ +I TA Sbjct: 64 TFTNKAAKEMKERIAQITTA 83 >gi|298252946|ref|ZP_06976740.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella vaginalis 5-1] gi|297533310|gb|EFH72194.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella vaginalis 5-1] Length = 1401 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 24/116 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A AGSGKT+ + +RV+ L+ P ++L LT T AA+E+ RV + ++ H Sbjct: 33 IVAGAGSGKTYTMTRRVIDLIERGVAPESILGLTFTNKAASELLARVAQAVS--QH---- 86 Query: 96 ILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 S+EI K+ G + S K +V T AF ++I++Q+ L Sbjct: 87 --SSEINKLINNGNSASSSGFLKP--------------EVMTYDAFFQSIVRQYGL 126 >gi|284931444|gb|ADC31382.1| DNA helicase II [Mycoplasma gallisepticum str. F] Length = 751 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 68/172 (39%), Gaps = 48/172 (27%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +V A AG+GKT +L R+ L+ P +L +T T AA EM HR+ Sbjct: 24 FVVAGAGTGKTKVLTSRIAYLIEHFKIPEYKILAITFTNKAAKEMQHRL----------- 72 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN- 152 +++L E T++ +T H FC ++++ E N Sbjct: 73 EKLLDKEKTQVS---------------------------FRTFHGFCAQVLRE---EVNN 102 Query: 153 ---ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 + F I DE KLIE+ KS + KK +++ I ND Sbjct: 103 VDRLNDRFNILDEVDQAKLIEDLLKSQKYEYYYSQYTDFKKN--KVMSIIND 152 >gi|282898588|ref|ZP_06306576.1| ATP-dependent DNA helicase PcrA [Cylindrospermopsis raciborskii CS-505] gi|281196456|gb|EFA71365.1| ATP-dependent DNA helicase PcrA [Cylindrospermopsis raciborskii CS-505] Length = 777 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT L R+ L+L N HP +L +T T AA EM R+ Sbjct: 30 VVAGAGSGKTRALTYRIANLILQNRVHPENILAVTFTNKAAREMKDRI 77 >gi|254423127|ref|ZP_05036845.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. PCC 7335] gi|196190616|gb|EDX85580.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. PCC 7335] Length = 784 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 19/158 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+L + P +L +T T AA EM R+ ++ L Sbjct: 28 VVAGAGSGKTRALTYRIANLILNHRVDPENILAVTFTNKAAREMKERIEKLFAEQESL-- 85 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ------QFP 148 A K P + + ++ T ++ GL V T HA C I++ Q Sbjct: 86 ----ARHGKPFHMLPEREQIQLRSYIYKTFIK---GLWVGTFHALCARILRYDIEKYQSA 138 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 T F+I DE ++ L+ K ++ + LD+ + Sbjct: 139 DGQRWTKSFSIFDESDAQSLV---KSIVISGLNLDDRK 173 >gi|241663638|ref|YP_002981998.1| UvrD/REP helicase [Ralstonia pickettii 12D] gi|240865665|gb|ACS63326.1| UvrD/REP helicase [Ralstonia pickettii 12D] Length = 786 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 DL++ EQ A + P SA + A AGSGKT +L R+ L+ A PS +L +T T Sbjct: 3 DLLANLNPEQRAAITLPDESALILAGAGSGKTRVLTTRIAWLIQSARVSPSGVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM+ R+ Sbjct: 63 KAAKEMTARL 72 >gi|237806835|ref|YP_002891275.1| exodeoxyribonuclease V, beta subunit [Tolumonas auensis DSM 9187] gi|237499096|gb|ACQ91689.1| exodeoxyribonuclease V, beta subunit [Tolumonas auensis DSM 9187] Length = 1175 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 11/140 (7%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT+ + LRLLL + +L +T T+AA AE+ R+L+ Sbjct: 18 IEASAGTGKTYTIAGLYLRLLLGHGSGDAAFGTPLPVDRILVVTFTEAATAELRQRILKA 77 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 I + + E+ ++ IQ D A L+T + TIH FC+ ++ Sbjct: 78 IRD-TRRALEVGHSDDQLIQNLISECPDQKLALRQLLTAERQMDEAAIYTIHGFCQRMLT 136 Query: 146 QFPLEANITSHFAIADEEQS 165 Q E+ EEQ+ Sbjct: 137 QNAFESGSLFDNEFLTEEQT 156 >gi|187777525|ref|ZP_02993998.1| hypothetical protein CLOSPO_01116 [Clostridium sporogenes ATCC 15579] gi|187774453|gb|EDU38255.1| hypothetical protein CLOSPO_01116 [Clostridium sporogenes ATCC 15579] Length = 1279 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 33/156 (21%) Query: 28 SDPTRSAWVSANAG--------SGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 +D R A + N +GKT +LVQR++ +L P LL +T T AAAA Sbjct: 7 TDEQRQAIFTKNCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAAA 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ + A S DE +++ + Q NKS+ + TI Sbjct: 67 EMRERIGD---AISKGLDEDPESKVLRKQLTLLNKSN-------------------IMTI 104 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 H+FC +++ I +F I DE + + +EA Sbjct: 105 HSFCLQVIKNNFHTIEIDPNFRICDETEGILMKQEA 140 >gi|187929519|ref|YP_001900006.1| UvrD/REP helicase [Ralstonia pickettii 12J] gi|309781705|ref|ZP_07676438.1| DNA helicase II [Ralstonia sp. 5_7_47FAA] gi|187726409|gb|ACD27574.1| UvrD/REP helicase [Ralstonia pickettii 12J] gi|308919346|gb|EFP65010.1| DNA helicase II [Ralstonia sp. 5_7_47FAA] Length = 786 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 DL++ EQ A + P SA + A AGSGKT +L R+ L+ A PS +L +T T Sbjct: 3 DLLANLNPEQRAAITLPDESALILAGAGSGKTRVLTTRIAWLIQSARVSPSGVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM+ R+ Sbjct: 63 KAAKEMTARL 72 >gi|298208568|ref|YP_003716747.1| putative helicase [Croceibacter atlanticus HTCC2559] gi|83848491|gb|EAP86360.1| putative helicase [Croceibacter atlanticus HTCC2559] Length = 773 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 24/53 (45%), Positives = 30/53 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT +L R+ L+ P +L LT T AA EM R+ EI+ A Sbjct: 25 VIAGAGSGKTRVLTMRIAHLMKNGVDPFNILSLTFTNKAAKEMKKRISEIVGA 77 >gi|327402801|ref|YP_004343639.1| UvrD/REP helicase [Fluviicola taffensis DSM 16823] gi|327318309|gb|AEA42801.1| UvrD/REP helicase [Fluviicola taffensis DSM 16823] Length = 771 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 30/53 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT +L R+ ++ P +L LT T AA EM+ R+ II + Sbjct: 24 VIAGAGSGKTRVLTMRIAFMIDRGVDPFNILALTFTNKAAKEMTERIGSIIGS 76 >gi|288802442|ref|ZP_06407881.1| putative UvrD/REP helicase domain protein [Prevotella melaninogenica D18] gi|288334970|gb|EFC73406.1| putative UvrD/REP helicase domain protein [Prevotella melaninogenica D18] Length = 1099 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 4/138 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95 A+AGSGKT L + L++ N +L +T T A EM R+L + +H L D Sbjct: 10 ASAGSGKTFTLASEYITLVVKNPQDYKKILAVTFTNKATQEMKTRILSQLYGIAHKLPDS 69 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 E + P + A L + +VQTI AF +++++ E N+T+ Sbjct: 70 QAYYEQVLRKTGFPELTIRENAAEALSLLTHHYNEFRVQTIDAFFQSVLRNLARELNLTA 129 Query: 156 HFAIA--DEEQSKKLIEE 171 + I DE+ + ++E Sbjct: 130 NLRIDLNDEQVEAQAVDE 147 >gi|283783598|ref|YP_003374352.1| UvrD/REP helicase [Gardnerella vaginalis 409-05] gi|283441008|gb|ADB13474.1| UvrD/REP helicase [Gardnerella vaginalis 409-05] Length = 1397 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 24/116 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A AGSGKT+ + +RV+ L+ P ++L LT T AA+E+ RV + ++ H Sbjct: 33 IVAGAGSGKTYTMTRRVIDLIERGVAPESILGLTFTNKAASELLARVAQAVS--QH---- 86 Query: 96 ILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 S+EI K+ G + S K +V T AF ++I++Q+ L Sbjct: 87 --SSEINKLINNGNSASSSGFLKP--------------EVMTYDAFFQSIVRQYGL 126 >gi|225351915|ref|ZP_03742938.1| hypothetical protein BIFPSEUDO_03519 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157162|gb|EEG70501.1| hypothetical protein BIFPSEUDO_03519 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 905 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 38/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A AGSGKT +L +R+ LL S++L +T T AAAEM R+ ++ Sbjct: 52 IGAGAGSGKTRVLTRRIAWLLAHGFWASSILAITFTNKAAAEMRERLASLVG-------- 103 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +A H+ I+ T H+ C I+++ E +TS Sbjct: 104 -------------------PEAEHMWIS-----------TFHSACVRILRRDGKEIGLTS 133 Query: 156 HFAIADEEQSKKLIE 170 F+I D ++L++ Sbjct: 134 GFSIYDTADCERLVK 148 >gi|119953412|ref|YP_945621.1| exodeoxyribonuclease V beta chain [Borrelia turicatae 91E135] gi|119862183|gb|AAX17951.1| exodeoxyribonuclease V beta chain [Borrelia turicatae 91E135] Length = 1147 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 28/125 (22%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII-TAWSHLS 93 + A+AG+GKT+IL + LL+ + PS +L LT TK A EM R+L+ I A+ Sbjct: 16 IEASAGTGKTYILENTITNLLINKTYSPSEILVLTFTKKATEEMHIRILKSIENAY---- 71 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 Q + +KS L I E + + TI+ F + F +E Sbjct: 72 -----------QNSQTDKS--------LKKIYEQSNKIFISTINKFALHSLNNFQIE--- 109 Query: 154 TSHFA 158 T HF Sbjct: 110 TEHFV 114 >gi|149914018|ref|ZP_01902550.1| Possible DNA helicase [Roseobacter sp. AzwK-3b] gi|149812302|gb|EDM72133.1| Possible DNA helicase [Roseobacter sp. AzwK-3b] Length = 1703 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65 Q ++E +D + + EQ++ D ++ V A GSGKT +LV RV L+ + P+ + Sbjct: 1078 QSYAEIVDNLGNSTQEQIVRDDREKTNVLVLAGPGSGKTRVLVHRVAYLVRIKREDPNGI 1137 Query: 66 LCLTHTKAAAAEMSHRVLEII 86 L L + + AAAE+ R+ +I Sbjct: 1138 LVLAYNRHAAAEIRERLRLLI 1158 >gi|297243751|ref|ZP_06927681.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella vaginalis AMD] gi|296888172|gb|EFH26914.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella vaginalis AMD] Length = 1417 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 24/116 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A AGSGKT+ + +RV+ L+ P ++L LT T AA+E+ RV + ++ H Sbjct: 33 IVAGAGSGKTYTMTRRVIDLIERGVAPESILGLTFTNKAASELLARVAQAVS--QH---- 86 Query: 96 ILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 S+EI K+ G + S K +V T AF ++I++Q+ L Sbjct: 87 --SSEINKLINNGNSASSSGFLKP--------------EVMTYDAFFQSIVRQYGL 126 >gi|254362319|ref|ZP_04978431.1| DNA helicase II [Mannheimia haemolytica PHL213] gi|153093899|gb|EDN74827.1| DNA helicase II [Mannheimia haemolytica PHL213] Length = 732 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +L R+ L+ + N S +L +T T Sbjct: 7 LDGLNDKQREAVAA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64 Query: 73 AAAAEMSHRV 82 AAAEM HR+ Sbjct: 65 KAAAEMRHRI 74 >gi|325522724|gb|EGD01222.1| UvrD/REP helicase [Burkholderia sp. TJI49] Length = 272 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|24213188|ref|NP_710669.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601] gi|24193905|gb|AAN47687.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601] Length = 433 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAA 75 + + ++Q + ++ TR V A AGSGKT +V + R+L+ N P ++L LT ++ AA Sbjct: 5 VQYSSAQQKVINENTRFVQVVAAAGSGKTSTMVGIIERILVENLFPKESVLVLTFSRKAA 64 Query: 76 AEMSHRVLEI 85 E+S+R+ ++ Sbjct: 65 IEISNRIQKV 74 >gi|261496496|ref|ZP_05992876.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307699|gb|EEY09022.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. OVINE] Length = 732 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +L R+ L+ + N S +L +T T Sbjct: 7 LDGLNDKQREAVAA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 64 Query: 73 AAAAEMSHRV 82 AAAEM HR+ Sbjct: 65 KAAAEMRHRI 74 >gi|261493261|ref|ZP_05989788.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311111|gb|EEY12287.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 734 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +L R+ L+ + N S +L +T T Sbjct: 9 LDGLNDKQREAVAA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAVTFTN 66 Query: 73 AAAAEMSHRV 82 AAAEM HR+ Sbjct: 67 KAAAEMRHRI 76 >gi|186475566|ref|YP_001857036.1| UvrD/REP helicase [Burkholderia phymatum STM815] gi|184192025|gb|ACC69990.1| UvrD/REP helicase [Burkholderia phymatum STM815] Length = 750 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 33/56 (58%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 P+ + V A AGSGKT+ L RV L++ P +L LT ++ AA EM+ RV I Sbjct: 69 PSGALLVIAGAGSGKTNTLAHRVANLVVKGVDPRRILLLTFSRRAALEMTRRVTRI 124 >gi|160879499|ref|YP_001558467.1| UvrD/REP helicase [Clostridium phytofermentans ISDg] gi|160428165|gb|ABX41728.1| UvrD/REP helicase [Clostridium phytofermentans ISDg] Length = 807 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 66/170 (38%), Gaps = 43/170 (25%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ L+ N +P ++ LT T AA EM RV +I+ Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIEERNVNPYQIMALTFTNKAAKEMRERVDKIVG------- 76 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 AE + V T H+ C I+++F Sbjct: 77 --YGAE-----------------------------NIWVSTFHSTCVRILRRFIETLGYD 105 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204 +F I D + K LI E L + +D + ++ F + + DE I Sbjct: 106 RNFTIYDTDDQKTLIRE----VLKFLQIDTKQTKERVFLSAISSAKDEGI 151 >gi|332181236|gb|AEE16924.1| UvrD/REP helicase [Treponema brennaborense DSM 12168] Length = 710 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 64/163 (39%), Gaps = 39/163 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 +++L + EQ A T A + A AGSGKT ++ R+ +L S +L LT T Sbjct: 2 SVNLRDELNQEQYEAVTTTEGALLIIAGAGSGKTRVITFRIAHMLDKGIPQSQILALTFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV E H GKK L Sbjct: 62 NKAAREMEERVKE------H-------------TGKKLQN-------------------L 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 V T HAF I++Q + +F+I DE +LI+E + Sbjct: 84 TVSTFHAFGVKILRQDIEQLGWRPNFSIYDETDRNQLIKETGR 126 >gi|229844857|ref|ZP_04464995.1| DNA-dependent helicase II [Haemophilus influenzae 6P18H1] gi|229812238|gb|EEP47929.1| DNA-dependent helicase II [Haemophilus influenzae 6P18H1] Length = 726 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ +T Sbjct: 4 SELLDGLNDKQREAVAA--PIGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61 Query: 70 HTKAAAAEMSHRV 82 T AAAEM HR+ Sbjct: 62 FTNKAAAEMRHRI 74 >gi|152990757|ref|YP_001356479.1| ATP-dependent DNA helicase UvrD [Nitratiruptor sp. SB155-2] gi|151422618|dbj|BAF70122.1| ATP-dependent DNA helicase, UvrD/REP family [Nitratiruptor sp. SB155-2] Length = 671 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 3/68 (4%) Query: 17 ISQTKSEQLLASDPTRSAW--VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 +S EQL A+ +S + V A+AG+GKT +V R+ LL P +L LT T A Sbjct: 3 LSTLNPEQLAAA-TAKSGYNLVIASAGTGKTSTIVARIAYLLQQGIEPKKILLLTFTNKA 61 Query: 75 AAEMSHRV 82 AAEM RV Sbjct: 62 AAEMIARV 69 >gi|113461072|ref|YP_719140.1| DNA helicase/exodeoxyribonuclease V subunit beta [Haemophilus somnus 129PT] gi|112823115|gb|ABI25204.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Haemophilus somnus 129PT] Length = 1216 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 18/144 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLE--- 84 + A+AG+GKTH +V +RLLL + +L +T+T+ A E+ R+ E Sbjct: 36 IEASAGTGKTHSIVSLYIRLLLQAGENNFSQALEVDQILVVTYTEMATQELKQRIRERIY 95 Query: 85 -----IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 +I H + +L + +Q P D+ A + L V TIH+F Sbjct: 96 QTKQALIQYQQHQNKTLLEDQF--LQELLPYIKDIDLAVYRLTLAERNLDISAVSTIHSF 153 Query: 140 CEAIMQQFPLEANITSHFAIADEE 163 C ++ Q+ + + + + +E Sbjct: 154 CRRVLMQYAFNSGVHFNMELVSDE 177 >gi|170717649|ref|YP_001784727.1| exodeoxyribonuclease V subunit beta [Haemophilus somnus 2336] gi|168825778|gb|ACA31149.1| exodeoxyribonuclease V, beta subunit [Haemophilus somnus 2336] Length = 1216 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 18/144 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLE--- 84 + A+AG+GKTH +V +RLLL + +L +T+T+ A E+ R+ E Sbjct: 36 IEASAGTGKTHSIVSLYIRLLLQAGENNFSQALEVDQILVVTYTEMATQELKQRIRERIY 95 Query: 85 -----IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 +I H + +L + +Q P D+ A + L V TIH+F Sbjct: 96 QTKQALIQYQQHQNKTLLEDQF--LQELLPYIKDIDLAVYRLTLAERNLDISAVSTIHSF 153 Query: 140 CEAIMQQFPLEANITSHFAIADEE 163 C ++ Q+ + + + + +E Sbjct: 154 CRRVLMQYAFNSGVHFNMELVSDE 177 >gi|289446520|ref|ZP_06436264.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis CPHL_A] gi|289419478|gb|EFD16679.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis CPHL_A] Length = 702 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 40/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ L+ A +L +T T AAAEM RV+ ++ Sbjct: 40 IVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVG------- 92 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 KAR++ ++ T H+ C I++ Q L + Sbjct: 93 --------------------EKARYMWVS-----------TFHSTCVRILRNQAALIEGL 121 Query: 154 TSHFAIADEEQSKKLIE 170 S+F+I D + S++L++ Sbjct: 122 NSNFSIYDADDSRRLLQ 138 >gi|283782302|ref|YP_003373057.1| UvrD/REP helicase [Pirellula staleyi DSM 6068] gi|283440755|gb|ADB19197.1| UvrD/REP helicase [Pirellula staleyi DSM 6068] Length = 669 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 23 EQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 EQ A D R V A AGSGKT ++ R+ L+ P +L +T T AAAEM HR Sbjct: 8 EQQEAVDTLRGPLLVLAGAGSGKTRVVTFRMANLIKHGTQPDRILAVTFTNKAAAEMQHR 67 Query: 82 VLEIITAWSHLSDEI 96 + ++ S + ++ Sbjct: 68 LSALLKTKSKIKPQV 82 >gi|148951|gb|AAC36867.1| DNA helicase II [Haemophilus influenzae] gi|739972|prf||2004269A DNA helicase II Length = 727 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ +T Sbjct: 5 SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62 Query: 70 HTKAAAAEMSHRV 82 T AAAEM HR+ Sbjct: 63 FTNKAAAEMRHRI 75 >gi|116669378|ref|YP_830311.1| ATP-dependent DNA helicase PcrA [Arthrobacter sp. FB24] gi|116609487|gb|ABK02211.1| ATP-dependent DNA helicase PcrA [Arthrobacter sp. FB24] Length = 830 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 56/141 (39%), Gaps = 39/141 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ L+ AH +L +T T AAAEM R+ Sbjct: 79 IVAGAGSGKTRVLSNRIAYLIATRRAHHGEILAITFTNKAAAEMRERI------------ 126 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E L KI + + T H+ C I++Q + Sbjct: 127 EALVGGRAKI--------------------------MWISTFHSSCVRILRQEAANVGLK 160 Query: 155 SHFAIADEEQSKKLIEEAKKS 175 S+F+I D S +L+ + KS Sbjct: 161 SNFSIYDSADSLRLVTQVSKS 181 >gi|322385777|ref|ZP_08059421.1| exonuclease RexA [Streptococcus cristatus ATCC 51100] gi|321270515|gb|EFX53431.1| exonuclease RexA [Streptococcus cristatus ATCC 51100] Length = 1223 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 19/124 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT+++VQR++ +L S L T T AA E+ R+ ++ Sbjct: 45 VSASAGSGKTYVMVQRIIDQILRGVEVSQLFISTFTVKAAGELKERL-----------EK 93 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +S I + Q D +HL + E + T+ AF + ++ ++ + Sbjct: 94 EMSLVIKETQ-------DQELRQHLAQQLAEIANA-DIGTMDAFTQKVVNKYGYLLGLAP 145 Query: 156 HFAI 159 HF I Sbjct: 146 HFRI 149 >gi|187735189|ref|YP_001877301.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835] gi|187425241|gb|ACD04520.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835] Length = 669 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 65/172 (37%), Gaps = 45/172 (26%) Query: 14 IDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 ID + EQ A S+P A V A AGSGKT L RV LL P +L LT T Sbjct: 20 IDYRTALNEEQYAAVSSEPG-PALVIAGAGSGKTRTLTYRVAWLLDHGTDPWNILLLTFT 78 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM+ RV +I D+S+ L Sbjct: 79 NKAAREMTERVRSLIPL------------------------DLSR--------------L 100 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 T H+ I++Q T F I D + K +I KS + S+ LD Sbjct: 101 WSGTFHSIANRILRQHAEYLGYTPAFTIMDSDDRKSMI----KSVVKSLKLD 148 >gi|114766742|ref|ZP_01445680.1| ATP-dependent DNA helicase [Pelagibaca bermudensis HTCC2601] gi|114541061|gb|EAU44117.1| ATP-dependent DNA helicase [Roseovarius sp. HTCC2601] Length = 680 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 31/50 (62%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT+ L RV LL+ A P +L +T ++ AA E++ RV I Sbjct: 33 VIAGAGSGKTNTLAHRVAHLLVNGADPQRILLMTFSRRAATELTRRVARI 82 >gi|308234985|ref|ZP_07665722.1| UvrD/REP helicase [Gardnerella vaginalis ATCC 14018] gi|311115083|ref|YP_003986304.1| UvrD/REP helicase [Gardnerella vaginalis ATCC 14019] gi|310946577|gb|ADP39281.1| UvrD/REP helicase [Gardnerella vaginalis ATCC 14019] Length = 1390 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLSD 94 + A AGSGKT+ + +RV+ L+ + P ++L LT T AAAE+ RV E+ + ++ + Sbjct: 35 IVAGAGSGKTYTMTRRVIHLIKSKVPPESILGLTFTNKAAAELLSRVSAEVSASGANGAK 94 Query: 95 EILSAEI 101 L E+ Sbjct: 95 SFLKPEV 101 >gi|182684250|ref|YP_001835997.1| DNA-dependent ATPase I and helicase II [Streptococcus pneumoniae CGSP14] gi|221232029|ref|YP_002511181.1| putative DNA helicase II, UvrD [Streptococcus pneumoniae ATCC 700669] gi|182629584|gb|ACB90532.1| DNA-dependent ATPase I and helicase II [Streptococcus pneumoniae CGSP14] gi|220674489|emb|CAR69050.1| putative DNA helicase II, UvrD [Streptococcus pneumoniae ATCC 700669] Length = 1334 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 41/111 (36%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 V A G+GKT IL +RV +L N H S+ ++CLT+T+A A+EM R+ ++I Sbjct: 34 VIAGPGTGKTQILSRRVANIL-TNYHTSSEEIVCLTYTEAGASEMLDRLEKLIGE----- 87 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 +G+K ++V TIHAFC ++ Sbjct: 88 -----------EGRK----------------------VRVSTIHAFCSELI 105 >gi|78776939|ref|YP_393254.1| UvrD/REP helicase [Sulfurimonas denitrificans DSM 1251] gi|78497479|gb|ABB44019.1| UvrD/REP helicase [Sulfurimonas denitrificans DSM 1251] Length = 692 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 17 ISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S+ EQ +A+ + A+AG+GKT +V R+ LL PS +L LT T +A Sbjct: 3 LSRLNEEQYVAATSKELQNLIIASAGTGKTSTIVGRIAHLLENGVEPSQILLLTFTNKSA 62 Query: 76 AEMSHRVLEII 86 AEM RV E Sbjct: 63 AEMVSRVAEFF 73 >gi|127514313|ref|YP_001095510.1| DNA-dependent helicase II [Shewanella loihica PV-4] gi|126639608|gb|ABO25251.1| ATP-dependent DNA helicase UvrD [Shewanella loihica PV-4] Length = 726 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 45/177 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L +T Sbjct: 4 SSLLDGLNDKQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM RV +K + S+M G Sbjct: 62 FTNKAAAEMRERV------------------------EKVSGSNM--------------G 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + + T H +++ +AN+ F I D + +LI K L S+ LD + Sbjct: 84 RMWIGTFHGLAHRLLRTHYQDANLPQSFQILDSDDQLRLI----KRILKSLNLDEKQ 136 >gi|260494743|ref|ZP_05814873.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_33] gi|260197905|gb|EEW95422.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_33] Length = 737 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 39/155 (25%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 AS S + A AGSGKT + R+ ++ P ++L +T T AA EM RV E+ Sbjct: 17 ASQIDGSILILAGAGSGKTRTITYRIAHMIENVGISPYSILAVTFTNKAAKEMRERVEEL 76 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + D++KA + T H+F +++ Sbjct: 77 V-------------------------GDIAKA-------------CTISTFHSFGMRLLR 98 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 + E S+F I D + K++++ K SI Sbjct: 99 MYGKEVGYNSNFTIYDTDDQKRIVKAILKGQNLSI 133 >gi|183221021|ref|YP_001839017.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911115|ref|YP_001962670.1| ATP-dependent DNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775791|gb|ABZ94092.1| ATP-dependent DNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779443|gb|ABZ97741.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 727 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 40/156 (25%) Query: 22 SEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMS 79 SEQ LA + + A AGSGKT ++ R+ L+L N +P+ +L +T T AA EM Sbjct: 8 SEQKLAVESVDGPLLILAGAGSGKTRVITYRIANLILNHNVYPNQILAVTFTNKAAEEMR 67 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R ++ S+ +P V+T H+ Sbjct: 68 SRCRNLLPDGSY----------------EPF----------------------VRTFHSL 89 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 C ++++ + S+F + D + + LI+E KS Sbjct: 90 CLYLLRREGKVLGLGSNFTVYDSDMQESLIKEILKS 125 >gi|189423552|ref|YP_001950729.1| UvrD/REP helicase [Geobacter lovleyi SZ] gi|189419811|gb|ACD94209.1| UvrD/REP helicase [Geobacter lovleyi SZ] Length = 736 Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 41/163 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHT 71 +DL++ + Q A T + A AGSGKT ++ R++ L+ + P +L +T T Sbjct: 1 MDLLAHLNTPQKQAVLHTEGPLLILAGAGSGKTRVITHRIVHLIREHGIRPWNILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM+ RV RHLL + +TP Sbjct: 61 NKAAKEMAERV-----------------------------------RHLLGS-HDTP--- 81 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + T HA C I++Q + S FAI D++ S++L+++ K Sbjct: 82 LIATFHATCGRILRQDIHQLGYESSFAIYDDKDSERLLKDLIK 124 >gi|309811913|ref|ZP_07705685.1| ATP-dependent DNA helicase PcrA [Dermacoccus sp. Ellin185] gi|308434125|gb|EFP57985.1| ATP-dependent DNA helicase PcrA [Dermacoccus sp. Ellin185] Length = 897 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ A A P +L +T T AAAEM RV +++ Sbjct: 125 IVAGAGSGKTRVLTHRIAYLMAARGAQPGQILAITFTNKAAAEMRERVEQLV 176 >gi|254459347|ref|ZP_05072768.1| UvrD/REP helicase [Campylobacterales bacterium GD 1] gi|207083960|gb|EDZ61251.1| UvrD/REP helicase [Campylobacterales bacterium GD 1] Length = 694 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Query: 17 ISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S+ EQ +A+ + + A+AG+GKT +V R+ LL P +L LT T AA Sbjct: 3 LSRLNQEQYVAATSNDAQNLIIASAGTGKTSTIVGRIGHLLGNGVKPQEILLLTFTNKAA 62 Query: 76 AEMSHRVLE 84 AEM RV E Sbjct: 63 AEMVERVAE 71 >gi|149179307|ref|ZP_01857868.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797] gi|148841848|gb|EDL56250.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797] Length = 693 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 1/93 (1%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 DL Q EQ A+ T + A AG+GKT L RV L+ PS +L LT ++ Sbjct: 10 DLFKQLNPEQQAAACHDTGPLLIIAGAGTGKTTTLSHRVAYLIAQGIDPSRILLLTFSRR 69 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQG 106 AA EM RV ++ A S + SA I G Sbjct: 70 AANEMVRRVDALLRAMSAGRENTASARSRSIWG 102 >gi|312144162|ref|YP_003995608.1| ATP-dependent DNA helicase PcrA [Halanaerobium sp. 'sapolanicus'] gi|311904813|gb|ADQ15254.1| ATP-dependent DNA helicase PcrA [Halanaerobium sp. 'sapolanicus'] Length = 715 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 39/135 (28%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT +L +R+ L+ P +L +T T AA EM +RV +++ Sbjct: 29 AGAGSGKTRVLTRRIAYLIKQRGVSPYNILAVTFTNKAAEEMKNRVAKMVDGVD------ 82 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 + LLI+ T H+FC I+++ + S+ Sbjct: 83 ---------------------KSLLIS-----------TFHSFCVRILRREAEKLGYQSN 110 Query: 157 FAIADEEQSKKLIEE 171 F I D +KLI++ Sbjct: 111 FVIFDSIDQRKLIKK 125 >gi|118590879|ref|ZP_01548279.1| DNA helicase II protein [Stappia aggregata IAM 12614] gi|118436401|gb|EAV43042.1| DNA helicase II protein [Stappia aggregata IAM 12614] Length = 812 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 70/185 (37%), Gaps = 43/185 (23%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D ++ EQ LA + T V A AG+GKT +L R+ +L A PS +L +T T Sbjct: 47 DYLTGLNPEQRLAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGLARPSEILAVTFTN 106 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ + G Sbjct: 107 KAAREMKERIAGFVGG-------------------------------------NVEGMAW 129 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ C I+++ + S F+I D + +LI K + + LD+ KAF Sbjct: 130 LGTFHSICVKILRKHAELVGLKSSFSILDTDDQIRLI----KQIIQAEGLDDKRWTAKAF 185 Query: 193 YEILE 197 IL+ Sbjct: 186 AGILD 190 >gi|317125678|ref|YP_004099790.1| UvrD/REP helicase [Intrasporangium calvum DSM 43043] gi|315589766|gb|ADU49063.1| UvrD/REP helicase [Intrasporangium calvum DSM 43043] Length = 1186 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 69/170 (40%), Gaps = 34/170 (20%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCL 68 + +DL T + + R V A AGSGKT + RV+ L+AN P +L L Sbjct: 23 ARALDLPPPTDEQAAVVEAGPRPLLVVAGAGSGKTETMAARVV-WLVANGLVAPDQVLGL 81 Query: 69 THTKAAAAEMSHRVLEIITA------WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122 T T+ AAAE+S R+ + + WS D+ AE+ G P Sbjct: 82 TFTRKAAAELSQRIAKRLRGLVRAGVWSPPEDDGGGAEVL---GGTPT------------ 126 Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 V T H++ ++++ L I F + E + +L EA Sbjct: 127 ----------VSTYHSYAGRLVREHALRLGIEPEFRVLTEAGAWQLAAEA 166 >gi|51246731|ref|YP_066615.1| ATP-dependent DNA helicase UvrD [Desulfotalea psychrophila LSv54] gi|50877768|emb|CAG37608.1| Probable ATP-dependent DNA helicase, UvrD/REP family [Desulfotalea psychrophila LSv54] Length = 733 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 37/73 (50%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 IDL ++ L + V A AGSGKT L+ RV LL P ++L LT T+ Sbjct: 16 IDLSGLNPAQHLAVTTTEGPVLVIAGAGSGKTRTLIYRVAHLLDKGVAPESILLLTFTRK 75 Query: 74 AAAEMSHRVLEII 86 A+ EM R E++ Sbjct: 76 ASQEMVWRAGELL 88 >gi|315452894|ref|YP_004073164.1| DNA helicase [Helicobacter felis ATCC 49179] gi|315131946|emb|CBY82574.1| DNA helicase [Helicobacter felis ATCC 49179] Length = 926 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 37/155 (23%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT LV R + LLL +L +T T AAAEM RVL+ L + Sbjct: 13 LRASAGSGKTFALVLRYVALLLQGVRAHEILAITFTNKAAAEMQGRVLKA------LEEL 66 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL---------------------KVQ 134 ++ A ++ K P L+ L+ GL ++ Sbjct: 67 LIDATSNPVEFKNPA----------LLQALQDTYGLDLGFIAPRIPAVYARFIQDKPQIM 116 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 TI AF + ++++F +++ F ++ + +KL+ Sbjct: 117 TIDAFFQRVLRKFSHFVGVSAQFVLSHLDPQEKLL 151 >gi|291518464|emb|CBK73685.1| Superfamily I DNA and RNA helicases [Butyrivibrio fibrisolvens 16/4] Length = 801 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 44/171 (25%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A AGSGKT +L RV L+ P ++ +T T AA EM R+ I+ S Sbjct: 23 ILAGAGSGKTRVLTHRVAYLIEQGVMPYNIMAITFTNKAAREMRERIDNIVGFGSD---- 78 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF--PLEANI 153 G+ V T HA C I+++F L Sbjct: 79 ----------------------------------GVWVATFHASCVRILRRFCENLGQGY 104 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204 +S+F I D + K L++E K + +D + ++ F ++ + ++ I Sbjct: 105 SSNFTIYDTDDCKTLMKEVCK----YLQIDTKQFKERTFLNVISDAKNKLI 151 >gi|317050280|ref|YP_004111396.1| UvrD/REP helicase [Desulfurispirillum indicum S5] gi|316945364|gb|ADU64840.1| UvrD/REP helicase [Desulfurispirillum indicum S5] Length = 643 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 28/49 (57%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A + A AGSGKT +L R++ LL P +L +T T AA EM R+ Sbjct: 30 ALILAGAGSGKTRVLTARIMNLLQQGVAPWNILAVTFTNKAAGEMRQRI 78 >gi|300726045|ref|ZP_07059503.1| putative UvrD/REP helicase domain protein [Prevotella bryantii B14] gi|299776652|gb|EFI73204.1| putative UvrD/REP helicase domain protein [Prevotella bryantii B14] Length = 1115 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 8/127 (6%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITA-WSHLS 93 A+AGSGKT L + ++L++ + P+ +L +T T A EM R+L + W L Sbjct: 13 ASAGSGKTFTLTKEYIKLVIKD--PTCYRNILAVTFTNKATEEMKMRILSTLYGIWKQLP 70 Query: 94 DEI-LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 D + +ITK P + ++A L ++ +V+TI F +++++ E + Sbjct: 71 DSVDYLKQITKEIDVSPELAS-AQAGKALSLLVHNYNYFRVETIDTFFQSVLRNLARELD 129 Query: 153 ITSHFAI 159 +T++ I Sbjct: 130 LTANLRI 136 >gi|34540779|ref|NP_905258.1| ATP-dependent DNA helicase UvrD/PcrA/Rep family [Porphyromonas gingivalis W83] gi|34397093|gb|AAQ66157.1| ATP-dependent DNA helicase UvrD/PcrA/Rep Family [Porphyromonas gingivalis W83] Length = 765 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 24/49 (48%), Positives = 31/49 (63%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A V A AGSGKT +LV ++L L+ + P+ L+ LT T AA EM RV Sbjct: 24 ALVIAGAGSGKTRVLVYKLLHLIHSGYDPARLMALTFTNKAAKEMKERV 72 >gi|298372545|ref|ZP_06982535.1| helicase [Bacteroidetes oral taxon 274 str. F0058] gi|298275449|gb|EFI17000.1| helicase [Bacteroidetes oral taxon 274 str. F0058] Length = 1036 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 14/159 (8%) Query: 36 VSANAGSGKTHIL-VQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT+ L +Q +LRL++ +L +T TK A AEM R+L + + ++ + Sbjct: 4 LKASAGSGKTYNLAMQFILRLVVEGDEAFRHILAVTFTKDATAEMKLRILADLYSIANGN 63 Query: 94 DEILSAEITK-IQGKKPNKSDMSK--ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 ++ L I + + G++ + K A L+ IL G V TI +F + +++ E Sbjct: 64 NQSLIDNIKRELPGRRSITDEQIKVVAHRALLKILHDYGNFNVGTIDSFFQRVLRNLARE 123 Query: 151 ANITSHFAI------ADEEQSKKLIEEAKKSTLASIMLD 183 S F I A E +++I +A T ++LD Sbjct: 124 LGKGSRFNIDLNDIKAVAEAVREVIAQAHNDT---VLLD 159 >gi|213965014|ref|ZP_03393213.1| ATP-dependent DNA helicase PcrA [Corynebacterium amycolatum SK46] gi|213952550|gb|EEB63933.1| ATP-dependent DNA helicase PcrA [Corynebacterium amycolatum SK46] Length = 899 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 40/141 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ L+ A PS +L +T T AAAEM RV ++ Sbjct: 97 IVAGAGSGKTSVLTRRIAYLIGARGVLPSQILAITFTNKAAAEMRERVAGLV-------- 148 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 G + + + V T H+ C I++ Q L + Sbjct: 149 -----------GDQAQR-------------------MWVSTFHSMCVRILRMQHALVPGL 178 Query: 154 TSHFAIADEEQSKKLIEEAKK 174 S+F+I D + S++L+ K Sbjct: 179 NSNFSIYDSDDSRRLLSMIAK 199 >gi|145633082|ref|ZP_01788814.1| DNA helicase II [Haemophilus influenzae 3655] gi|144986308|gb|EDJ92887.1| DNA helicase II [Haemophilus influenzae 3655] Length = 726 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ +T Sbjct: 4 SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61 Query: 70 HTKAAAAEMSHRV 82 T AAAEM HR+ Sbjct: 62 FTNKAAAEMRHRI 74 >gi|261868383|ref|YP_003256305.1| DNA-dependent helicase II [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413715|gb|ACX83086.1| DNA helicase II [Aggregatibacter actinomycetemcomitans D11S-1] Length = 724 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 38/167 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + +E +D ++ + E + S P + V A AGSGKT +L R+ L+ + +++ Sbjct: 2 DFAELLDGLNDKQREAV--SAPLGNYLVLAGAGSGKTRVLTNRIAWLIGVEGISEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +S +S L Sbjct: 60 VTFTNKAAAEMRHRI----------------------------ESVLSDGNQRLF----- 86 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 G+ V T H+ +++ L+A++ F I D E +LI+ K Sbjct: 87 --GMWVGTFHSIAHRLLRAHHLDADLPQDFQILDSEDQLRLIKRLMK 131 >gi|145635037|ref|ZP_01790743.1| DNA helicase II [Haemophilus influenzae PittAA] gi|145267645|gb|EDK07643.1| DNA helicase II [Haemophilus influenzae PittAA] Length = 726 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ +T Sbjct: 4 SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61 Query: 70 HTKAAAAEMSHRV 82 T AAAEM HR+ Sbjct: 62 FTNKAAAEMRHRI 74 >gi|145627832|ref|ZP_01783633.1| DNA helicase II [Haemophilus influenzae 22.1-21] gi|145639293|ref|ZP_01794899.1| DNA helicase II [Haemophilus influenzae PittII] gi|144979607|gb|EDJ89266.1| DNA helicase II [Haemophilus influenzae 22.1-21] gi|145271596|gb|EDK11507.1| DNA helicase II [Haemophilus influenzae PittII] Length = 726 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ +T Sbjct: 4 SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61 Query: 70 HTKAAAAEMSHRV 82 T AAAEM HR+ Sbjct: 62 FTNKAAAEMRHRI 74 >gi|319776569|ref|YP_004139057.1| DNA helicase II [Haemophilus influenzae F3047] gi|319897345|ref|YP_004135541.1| DNA helicase ii [Haemophilus influenzae F3031] gi|317432850|emb|CBY81215.1| DNA helicase II [Haemophilus influenzae F3031] gi|317451160|emb|CBY87393.1| DNA helicase II [Haemophilus influenzae F3047] Length = 727 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ +T Sbjct: 5 SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62 Query: 70 HTKAAAAEMSHRV 82 T AAAEM HR+ Sbjct: 63 FTNKAAAEMRHRI 75 >gi|317121134|ref|YP_004101137.1| ATP-dependent DNA helicase PcrA [Thermaerobacter marianensis DSM 12885] gi|315591114|gb|ADU50410.1| ATP-dependent DNA helicase PcrA [Thermaerobacter marianensis DSM 12885] Length = 791 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 DL++ Q A + P V A AGSGKT +L +RV LL P +L +T T Sbjct: 3 DLLADLNPAQREAVTHPGGPVLVLAGAGSGKTRVLTRRVAFLLEQGVAPHQILAITFTNK 62 Query: 74 AAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 63 AAREMRERVEQLV 75 >gi|257456155|ref|ZP_05621352.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema vincentii ATCC 35580] gi|257446241|gb|EEV21287.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema vincentii ATCC 35580] Length = 1167 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 21/156 (13%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 ID+ Q A +A V+A AGSGKT +L R + L+ N +L LT T Sbjct: 9 IDICKDLNEHQKQAVKINENAVVAAGAGSGKTKVLASRYVYLITEKNYQVENILALTFTD 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E+ K+ ++D + R+ L++ + Sbjct: 69 KAAAEMHRRIYR---------------ELQKMY----TETDDAMQRNRAGAALDSFFKAQ 109 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 + TI AFC I I+ F I D +SK+L Sbjct: 110 IMTIDAFCHKIAVTACRRFGISPDFTI-DLTESKRL 144 >gi|145637060|ref|ZP_01792723.1| DNA helicase II [Haemophilus influenzae PittHH] gi|145269714|gb|EDK09654.1| DNA helicase II [Haemophilus influenzae PittHH] Length = 726 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ +T Sbjct: 4 SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61 Query: 70 HTKAAAAEMSHRV 82 T AAAEM HR+ Sbjct: 62 FTNKAAAEMRHRI 74 >gi|148828339|ref|YP_001293092.1| DNA-dependent helicase II [Haemophilus influenzae PittGG] gi|148719581|gb|ABR00709.1| DNA helicase II [Haemophilus influenzae PittGG] Length = 726 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 39/155 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ +T Sbjct: 4 SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK-ARHLLITILETP 128 T AAAEM HR+ +S ++K A+H L+ Sbjct: 62 FTNKAAAEMRHRI----------------------------QSTLAKHAQHQLV------ 87 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE 163 G+ + T H+ +++ L+ + F I D E Sbjct: 88 -GMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSE 121 >gi|15128573|dbj|BAB62752.1| putative ATP-dependent exonuclease subunit A [Streptococcus criceti] Length = 495 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 19/135 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R++ +L + S L T T AA E+ R+ ++ Sbjct: 48 VSASAGSGKTFVMVERIIDMLKRGVNISQLFISTFTVKAAGELKERI-----------ED 96 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 L EI K Q D + +HL + + + T+ AF + ++ + ++ Sbjct: 97 KLIKEIAKTQ-------DQALKQHLSAQLGDIQNA-DIGTMDAFAQKLVNTYGYSLGVSP 148 Query: 156 HFAIADEEQSKKLIE 170 +F I ++ + +++ Sbjct: 149 NFRIMQDKSEQDILK 163 >gi|307299290|ref|ZP_07579091.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915086|gb|EFN45472.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2] Length = 652 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 47/208 (22%), Positives = 84/208 (40%), Gaps = 47/208 (22%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A GSGKT ++ ++ L+ + +P +L +T T+AA+ EM Sbjct: 36 IVAGPGSGKTRVITYKIAHLVSNSINPQNILLVTFTRAASREM----------------- 78 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + +AR + + L+ G+ T H C ++++ A + Sbjct: 79 ------------------IDRARRVSGSNLK---GMLSGTFHHVCNYFLRKYAKAAGLAE 117 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215 +F I D E +K LI+ + L N+ L A +L+ + L S + Sbjct: 118 NFTILDREDAKDLIKHCRTELLEERKGINSSTLPSA--GVLQSIYSYSVNVLSS--LRES 173 Query: 216 TALKLIFFFFSY-----LWRRKIIEKSL 238 TA K F SY +W+R + EK++ Sbjct: 174 TARKNRKFLGSYDEIEEIWKRYVQEKTV 201 >gi|260581112|ref|ZP_05848933.1| DNA helicase II [Haemophilus influenzae RdAW] gi|260092241|gb|EEW76183.1| DNA helicase II [Haemophilus influenzae RdAW] Length = 727 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ +T Sbjct: 5 SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62 Query: 70 HTKAAAAEMSHRV 82 T AAAEM HR+ Sbjct: 63 FTNKAAAEMRHRI 75 >gi|209515754|ref|ZP_03264617.1| UvrD/REP helicase [Burkholderia sp. H160] gi|209503781|gb|EEA03774.1| UvrD/REP helicase [Burkholderia sp. H160] Length = 696 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTAPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E ST Sbjct: 117 PQFSIMDSDDCFGMIQEQVGST 138 >gi|309973348|gb|ADO96549.1| DNA helicase II [Haemophilus influenzae R2846] Length = 727 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ +T Sbjct: 5 SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62 Query: 70 HTKAAAAEMSHRV 82 T AAAEM HR+ Sbjct: 63 FTNKAAAEMRHRI 75 >gi|225551821|ref|ZP_03772764.1| exodeoxyribonuclease V, beta subunit [Borrelia sp. SV1] gi|225371616|gb|EEH01043.1| exodeoxyribonuclease V, beta subunit [Borrelia sp. SV1] Length = 1169 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92 + A+AG+GKTHIL V+ L+ + + +L LT TK A EM R+L++I A+S+ Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75 Query: 93 SDEIL 97 ++EIL Sbjct: 76 TNEIL 80 >gi|309751169|gb|ADO81153.1| DNA helicase II [Haemophilus influenzae R2866] Length = 727 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ +T Sbjct: 5 SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62 Query: 70 HTKAAAAEMSHRV 82 T AAAEM HR+ Sbjct: 63 FTNKAAAEMRHRI 75 >gi|301169926|emb|CBW29530.1| DNA-dependent ATPase I and helicase II [Haemophilus influenzae 10810] Length = 727 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ +T Sbjct: 5 SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62 Query: 70 HTKAAAAEMSHRV 82 T AAAEM HR+ Sbjct: 63 FTNKAAAEMRHRI 75 >gi|224532974|ref|ZP_03673582.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi WI91-23] gi|224512091|gb|EEF82484.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi WI91-23] Length = 1169 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92 + A+AG+GKTHIL V+ L+ + + +L LT TK A EM R+L++I A+S+ Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75 Query: 93 SDEIL 97 ++EIL Sbjct: 76 TNEIL 80 >gi|300690847|ref|YP_003751842.1| DNA helicase II [Ralstonia solanacearum PSI07] gi|299077907|emb|CBJ50546.1| DNA helicase II [Ralstonia solanacearum PSI07] Length = 795 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL++ EQ A + P SA + A AGSGKT +L R+ L+ + PS +L +T T Sbjct: 3 DLLAHLNPEQRTAVTLPDESALILAGAGSGKTRVLTTRIAWLVQSGRVSPSGVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM+ R+ Sbjct: 63 KAAKEMTSRL 72 >gi|193216394|ref|YP_001997593.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110] gi|193089871|gb|ACF15146.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110] Length = 765 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 39/158 (24%) Query: 16 LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ +EQ A + T+ + A AGSGKT ++ R+ ++ N P+ +L LT T Sbjct: 18 LLKSLNTEQKKAVETTKGPVMIIAGAGSGKTRVITFRIAYIINKENCAPNQILALTFTNK 77 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV EI+ S GL + Sbjct: 78 AANEMRSRVEEILGTGS-------------------------------------TRGLWI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ +++Q TS + I D + SK LI++ Sbjct: 101 GTFHSNFARLLRQHADRLGFTSDYTIYDADDSKNLIKQ 138 >gi|115351375|ref|YP_773214.1| UvrD/REP helicase [Burkholderia ambifaria AMMD] gi|115281363|gb|ABI86880.1| ATP-dependent DNA helicase UvrD [Burkholderia ambifaria AMMD] Length = 840 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A + P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 56 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 115 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 116 KAAREMMARL 125 >gi|15594978|ref|NP_212767.1| exodeoxyribonuclease V, beta chain (recB) [Borrelia burgdorferi B31] gi|8134451|sp|O51578|EX5B_BORBU RecName: Full=Exodeoxyribonuclease V beta chain gi|2688551|gb|AAC66981.1| exodeoxyribonuclease V, beta chain (recB) [Borrelia burgdorferi B31] Length = 1169 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92 + A+AG+GKTHIL V+ L+ + + +L LT TK A EM R+L++I A+S+ Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75 Query: 93 SDEIL 97 ++EIL Sbjct: 76 TNEIL 80 >gi|158317729|ref|YP_001510237.1| ATP-dependent DNA helicase PcrA [Frankia sp. EAN1pec] gi|158113134|gb|ABW15331.1| ATP-dependent DNA helicase PcrA [Frankia sp. EAN1pec] Length = 851 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ LL A A P +L +T T AA EM RV I+ Sbjct: 88 VVAGAGSGKTRVLTHRIAYLLAARGARPGEILAITFTNKAAGEMKERVEAIV 139 >gi|324999173|ref|ZP_08120285.1| ATP-dependent DNA helicase PcrA [Pseudonocardia sp. P1] Length = 829 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL HP ++ +T T AAAEM RV ++ Sbjct: 49 IVAGAGSGKTRVLTHRIGWLLAERGVHPGEIMSITFTNKAAAEMKERVDGLV-------- 100 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G++ G + V T H+ C I+++ + Sbjct: 101 -----------GRR-------------------SGPMWVSTFHSMCVRILRREAKHLGVR 130 Query: 155 SHFAIADEEQSKKLI 169 S F++ D + S++L+ Sbjct: 131 SAFSVYDADDSRRLV 145 >gi|307730434|ref|YP_003907658.1| UvrD/REP helicase [Burkholderia sp. CCGE1003] gi|307584969|gb|ADN58367.1| UvrD/REP helicase [Burkholderia sp. CCGE1003] Length = 787 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGLASPATILAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMSRL 72 >gi|163857713|ref|YP_001632011.1| ATP-dependent DNA helicase [Bordetella petrii DSM 12804] gi|163261441|emb|CAP43743.1| ATP-dependent DNA helicase [Bordetella petrii] Length = 707 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT L RV L+L A P +L LT ++ AA EM RV ++ Sbjct: 51 VIAGAGSGKTSTLAHRVAHLILNGADPQRMLLLTFSRRAAQEMERRVGMVL 101 >gi|225548947|ref|ZP_03769924.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 94a] gi|225370550|gb|EEG99986.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 94a] Length = 1169 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92 + A+AG+GKTHIL V+ L+ + + +L LT TK A EM R+L++I A+S+ Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75 Query: 93 SDEIL 97 ++EIL Sbjct: 76 TNEIL 80 >gi|226320369|ref|ZP_03795938.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 29805] gi|226234232|gb|EEH32944.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 29805] Length = 1169 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92 + A+AG+GKTHIL V+ L+ + + +L LT TK A EM R+L++I A+S+ Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75 Query: 93 SDEIL 97 ++EIL Sbjct: 76 TNEIL 80 >gi|170694337|ref|ZP_02885491.1| UvrD/REP helicase [Burkholderia graminis C4D1M] gi|170140760|gb|EDT08934.1| UvrD/REP helicase [Burkholderia graminis C4D1M] Length = 701 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E ST Sbjct: 117 PQFSIMDSDDCFGMIQEQVGST 138 >gi|226321331|ref|ZP_03796858.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi Bol26] gi|226233127|gb|EEH31879.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi Bol26] Length = 1169 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92 + A+AG+GKTHIL V+ L+ + + +L LT TK A EM R+L++I A+S+ Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75 Query: 93 SDEIL 97 ++EIL Sbjct: 76 TNEIL 80 >gi|218249700|ref|YP_002375134.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi ZS7] gi|218164888|gb|ACK74949.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi ZS7] Length = 1169 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92 + A+AG+GKTHIL V+ L+ + + +L LT TK A EM R+L++I A+S+ Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75 Query: 93 SDEIL 97 ++EIL Sbjct: 76 TNEIL 80 >gi|330827780|ref|YP_004390732.1| DNA helicase II [Aeromonas veronii B565] gi|328802916|gb|AEB48115.1| DNA helicase II [Aeromonas veronii B565] Length = 723 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 43/186 (23%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ L+ + P +++ +T T AAAEM RV ++I Sbjct: 21 PRSNLLVLAGAGSGKTRVLVHRIAWLMQVERCSPFSIIAVTFTNKAAAEMRGRVEKVI-- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 D + G+ + T H +++ Sbjct: 79 ----GDGVR--------------------------------GMWIGTFHGIAHRLLRAHH 102 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208 L+A + F I D + +LI + L ++ LD +A + DE + Sbjct: 103 LDAGLPQDFQILDSDDQYRLI----RRVLKALNLDEKHWAPRAVMGYINGKKDEGLRPGD 158 Query: 209 SDIISN 214 D+ + Sbjct: 159 IDLYGD 164 >gi|224533481|ref|ZP_03674071.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi CA-11.2a] gi|224513361|gb|EEF83722.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi CA-11.2a] Length = 1169 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92 + A+AG+GKTHIL V+ L+ + + +L LT TK A EM R+L++I A+S+ Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75 Query: 93 SDEIL 97 ++EIL Sbjct: 76 TNEIL 80 >gi|221217840|ref|ZP_03589307.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 72a] gi|221192146|gb|EEE18366.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 72a] Length = 1169 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92 + A+AG+GKTHIL V+ L+ + + +L LT TK A EM R+L++I A+S+ Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75 Query: 93 SDEIL 97 ++EIL Sbjct: 76 TNEIL 80 >gi|225550058|ref|ZP_03771019.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 118a] gi|225369517|gb|EEG98969.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 118a] Length = 1169 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92 + A+AG+GKTHIL V+ L+ + + +L LT TK A EM R+L++I A+S+ Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75 Query: 93 SDEIL 97 ++EIL Sbjct: 76 TNEIL 80 >gi|145295025|ref|YP_001137846.1| hypothetical protein cgR_0969 [Corynebacterium glutamicum R] gi|140844945|dbj|BAF53944.1| hypothetical protein [Corynebacterium glutamicum R] Length = 763 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 64/158 (40%), Gaps = 41/158 (25%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DLI +Q A + S + A AGSGKT +L +R+ L+ HP +L +T T Sbjct: 12 DLIDGLNEQQRAAVEHIGSPLLIVAGAGSGKTAVLTRRIAYLMRYRGVHPQQILAITFTN 71 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV +++ P M Sbjct: 72 KAAAEMRERVSQLV---------------------GPVAERMW----------------- 93 Query: 133 VQTIHAFCEAIM-QQFPLEANITSHFAIADEEQSKKLI 169 V T H+ C I+ QQ L + ++F I D + S++L+ Sbjct: 94 VATFHSVCVRILRQQAQLVEGLNTNFTIYDSDDSRRLL 131 >gi|322804716|emb|CBZ02268.1| ATP-dependent nuclease, subunit A [Clostridium botulinum H04402 065] Length = 319 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 25/132 (18%) Query: 44 KTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100 KT +LVQR++ +L P LL +T T AAAAEM R+ + I S DE ++ Sbjct: 31 KTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAAAEMRERIGDAI---SKGLDEDPESK 87 Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160 + + Q NKS+ + TIH+FC +++ I +F I Sbjct: 88 VLRKQLTLLNKSN-------------------IMTIHSFCLQVIKNNFHTMEIDPNFRIC 128 Query: 161 DEEQSKKLIEEA 172 DE + + +EA Sbjct: 129 DETEGILMKQEA 140 >gi|223889347|ref|ZP_03623933.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 64b] gi|223885033|gb|EEF56137.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 64b] Length = 1169 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92 + A+AG+GKTHIL V+ L+ + + +L LT TK A EM R+L++I A+S+ Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75 Query: 93 SDEIL 97 ++EIL Sbjct: 76 TNEIL 80 >gi|195941453|ref|ZP_03086835.1| exodeoxyribonuclease V, beta chain (recB) [Borrelia burgdorferi 80a] gi|312149352|gb|ADQ29423.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi N40] Length = 1169 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92 + A+AG+GKTHIL V+ L+ + + +L LT TK A EM R+L++I A+S+ Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75 Query: 93 SDEIL 97 ++EIL Sbjct: 76 TNEIL 80 >gi|189459925|ref|ZP_03008710.1| hypothetical protein BACCOP_00558 [Bacteroides coprocola DSM 17136] gi|189433359|gb|EDV02344.1| hypothetical protein BACCOP_00558 [Bacteroides coprocola DSM 17136] Length = 1606 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAAAEMSHRV 82 ++++ +R V+A GSGKT +LV ++ LLL + LL LT ++AAA E R+ Sbjct: 1062 EIISDKDSRCIVVAAGPGSGKTRVLVHKLASLLLLEDVKHEQLLMLTFSRAAATEFKQRL 1121 Query: 83 LEIITAWSH 91 +E+I +H Sbjct: 1122 MELIGNAAH 1130 >gi|317472659|ref|ZP_07931974.1| UvrD/REP helicase [Anaerostipes sp. 3_2_56FAA] gi|316899836|gb|EFV21835.1| UvrD/REP helicase [Anaerostipes sp. 3_2_56FAA] Length = 618 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A GSGKT ++ +R L+ +PS +L +T TKAAAAEM R L++ Sbjct: 21 VLAGPGSGKTTVITERTKYLIEHCGVNPSNILVITFTKAAAAEMKERFLKL 71 >gi|312148305|gb|ADQ30964.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi JD1] Length = 1169 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92 + A+AG+GKTHIL V+ L+ + + +L LT TK A EM R+L++I A+S+ Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75 Query: 93 SDEIL 97 ++EIL Sbjct: 76 TNEIL 80 >gi|312884293|ref|ZP_07744002.1| exodeoxyribonuclease V beta chain [Vibrio caribbenthicus ATCC BAA-2122] gi|309368066|gb|EFP95609.1| exodeoxyribonuclease V beta chain [Vibrio caribbenthicus ATCC BAA-2122] Length = 1204 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 23/136 (16%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT + LRLLL + ST +L +T T+AA AE+ R+ Sbjct: 21 SRLIEASAGTGKTFTIAGLYLRLLLGHGSSSTRHASPLTVDQILVVTFTEAATAELKDRI 80 Query: 83 LEII----TAWSHL--SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 I A+S D +++ +T IQ D A +L+ + TI Sbjct: 81 RSRIHSARLAFSRGESDDPVIAPLLTDIQ-------DHQAASEILLQAERQIDEAAIFTI 133 Query: 137 HAFCEAIMQQFPLEAN 152 H FC+ +++Q E+ Sbjct: 134 HGFCQRVLKQNAFESG 149 >gi|300703480|ref|YP_003745082.1| DNA helicase II [Ralstonia solanacearum CFBP2957] gi|299071143|emb|CBJ42456.1| DNA helicase II [Ralstonia solanacearum CFBP2957] Length = 791 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A + P SA + A AGSGKT +L R+ L+ ++ PS +L +T T Sbjct: 3 DLLAHLNPEQRAAVTLPDESALILAGAGSGKTRVLTTRIAWLIQSSRVSPSGVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM+ R+ Sbjct: 63 KAAKEMTARL 72 >gi|295678114|ref|YP_003606638.1| UvrD/REP helicase [Burkholderia sp. CCGE1002] gi|295437957|gb|ADG17127.1| UvrD/REP helicase [Burkholderia sp. CCGE1002] Length = 696 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTAPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E ST Sbjct: 117 PQFSIMDSDDCFGMIQEQVGST 138 >gi|170728818|ref|YP_001762844.1| DNA-dependent helicase II [Shewanella woodyi ATCC 51908] gi|169814165|gb|ACA88749.1| DNA helicase II [Shewanella woodyi ATCC 51908] Length = 721 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 45/177 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L +T Sbjct: 4 SSLLDGLNDKQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM RV +K + S+M G Sbjct: 62 FTNKAAAEMRERV------------------------EKVSGSNM--------------G 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + + T H +++ +AN+ F I D + +LI K L S+ LD + Sbjct: 84 RMWIGTFHGLAHRLLRTHYQDANLPQTFQIIDSDDQLRLI----KRILKSLNLDEKQ 136 >gi|302670353|ref|YP_003830313.1| ATP-dependent DNA helicase PcrA [Butyrivibrio proteoclasticus B316] gi|302394826|gb|ADL33731.1| ATP-dependent DNA helicase PcrA [Butyrivibrio proteoclasticus B316] Length = 847 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 43/169 (25%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L SQ K L P + A AGSGKT +L RV L+ N +P ++ +T T A Sbjct: 7 LNSQQKKAVLQTDGPV---LILAGAGSGKTRVLTHRVAYLIDECNVNPWNIMAITFTNKA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +I+ AE + V Sbjct: 64 AGEMRERVDKIVG---------FGAE-----------------------------SIWVS 85 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIML 182 T H+ C I++++ + +++F I D + SK L+++ KK L + L Sbjct: 86 TFHSSCVRILRRYADKLGFSNNFTIYDTDDSKTLMKDICKKYQLETTQL 134 >gi|212716069|ref|ZP_03324197.1| hypothetical protein BIFCAT_00982 [Bifidobacterium catenulatum DSM 16992] gi|212661436|gb|EEB22011.1| hypothetical protein BIFCAT_00982 [Bifidobacterium catenulatum DSM 16992] Length = 907 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 38/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A AGSGKT +L +R+ LL S++L +T T AAAEM R+ ++ Sbjct: 52 IGAGAGSGKTRVLTRRIAWLLAHGFWASSILAITFTNKAAAEMRERLAALVG-------- 103 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +A H+ I+ T H+ C I+++ E +TS Sbjct: 104 -------------------PEAEHMWIS-----------TFHSACVRILRRDGKEIGLTS 133 Query: 156 HFAIADEEQSKKLIE 170 F+I D ++L++ Sbjct: 134 GFSIYDTADCERLVK 148 >gi|216264167|ref|ZP_03436159.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 156a] gi|215980640|gb|EEC21447.1| exodeoxyribonuclease V, beta subunit [Borrelia burgdorferi 156a] Length = 1169 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH-L 92 + A+AG+GKTHIL V+ L+ + + +L LT TK A EM R+L++I A+S+ Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTKKATEEMHTRILKVIENAYSNSK 75 Query: 93 SDEIL 97 ++EIL Sbjct: 76 TNEIL 80 >gi|291166490|gb|EFE28536.1| ATP-dependent DNA helicase PcrA [Filifactor alocis ATCC 35896] Length = 725 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 7/75 (9%) Query: 17 ISQTKSEQLLASDPTRSAW----VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 I++ EQL D ++A + A AGSGKT ++ R+ L+ PS +L LT T Sbjct: 3 IAELNKEQL---DAVQTAGGNMLILAGAGSGKTRVITYRIAYLINHGVSPSNILALTFTN 59 Query: 73 AAAAEMSHRVLEIIT 87 AA EM R+ I++ Sbjct: 60 KAANEMKDRLSSILS 74 >gi|314933179|ref|ZP_07840544.1| ATP-dependent nuclease subunit A [Staphylococcus caprae C87] gi|313653329|gb|EFS17086.1| ATP-dependent nuclease subunit A [Staphylococcus caprae C87] Length = 1218 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 37/192 (19%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +LV+R++ R+L N LL +T T +A EM RV + Sbjct: 28 VAAAAGSGKTAVLVERIIQRILRDNMDVDLLLVVTFTNLSAREMKLRVDQ---------- 77 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +IQ + D ++ + I + ++ T+H+FC ++Q Sbjct: 78 --------RIQEASLAEPDNEHLKNQRVKIHQA----QISTLHSFCLKLIQL-------- 117 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN 214 H+ + D + + + EA+ L +D ++ + Y+IL+ E E L SD + Sbjct: 118 -HYDVLDIDPNFRTSSEAENVLLLDQTID---DVLERHYDILDSDFIELTEQLSSDRNDD 173 Query: 215 --RTALKLIFFF 224 R +K ++FF Sbjct: 174 QFRNIIKRLYFF 185 >gi|282877935|ref|ZP_06286744.1| putative ATP-dependent helicase PcrA [Prevotella buccalis ATCC 35310] gi|281299936|gb|EFA92296.1| putative ATP-dependent helicase PcrA [Prevotella buccalis ATCC 35310] Length = 810 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 DL+SQ EQ A V A AGSGKT +L ++ L+ P ++L LT T Sbjct: 3 DLLSQLNQEQRSAVTYNDGPQLVIAGAGSGKTRVLTYKIAYLVQQGMQPWSILALTFTNK 62 Query: 74 AAAEMSHRVLEII 86 AA EM R+ ++I Sbjct: 63 AANEMKQRIAQLI 75 >gi|293392075|ref|ZP_06636409.1| DNA helicase II [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952609|gb|EFE02728.1| DNA helicase II [Aggregatibacter actinomycetemcomitans D7S-1] Length = 724 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 38/167 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + +E +D ++ + E + S P + V A AGSGKT +L R+ L+ + +++ Sbjct: 2 DFAELLDGLNDKQREAV--SAPLGNYLVLAGAGSGKTRVLTHRIAWLIGVEGISEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +S +S L Sbjct: 60 VTFTNKAAAEMRHRI----------------------------ESVLSDGNQRLF----- 86 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 G+ V T H+ +++ L+A++ F I D E +LI+ K Sbjct: 87 --GMWVGTFHSIAHRLLRAHHLDADLPQDFQILDSEDQLRLIKRLMK 131 >gi|85859303|ref|YP_461505.1| exodeoxyribonuclease V subunit beta [Syntrophus aciditrophicus SB] gi|85722394|gb|ABC77337.1| exodeoxyribonuclease V beta chain [Syntrophus aciditrophicus SB] Length = 1230 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 11/136 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVL----EIITAWS 90 + ANAG+GKT+ + LRL++ +A +L +T+T AA E+ R+ + A Sbjct: 17 IEANAGTGKTYAISGLFLRLIVEHALQVGEILVMTYTVAATEELKDRIRCTLSRALEALG 76 Query: 91 H--LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 H + D L + + ++ S AR L T L + TIH FC+ +Q+ Sbjct: 77 HGRVEDLFLDSFVRRLAEDDRTNS----ARRRLATALRDFDEAAIFTIHGFCQRTLQENA 132 Query: 149 LEANITSHFAIADEEQ 164 E++ T + + E + Sbjct: 133 FESHSTFNAELITESE 148 >gi|307731432|ref|YP_003908656.1| UvrD/REP helicase [Burkholderia sp. CCGE1003] gi|307585967|gb|ADN59365.1| UvrD/REP helicase [Burkholderia sp. CCGE1003] Length = 699 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E ST Sbjct: 117 PQFSIMDSDDCFGMIQEQVGST 138 >gi|157373608|ref|YP_001472208.1| DNA-dependent helicase II [Shewanella sediminis HAW-EB3] gi|157315982|gb|ABV35080.1| DNA helicase II [Shewanella sediminis HAW-EB3] Length = 721 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 45/177 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L +T Sbjct: 4 SSLLDGLNDEQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM RV +K + S+M G Sbjct: 62 FTNKAAAEMRERV------------------------EKVSGSNM--------------G 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + + T H +++ +AN+ F I D + +LI K L S+ LD + Sbjct: 84 RMWIGTFHGLAHRLLRTHYKDANLPQTFQIIDSDDQLRLI----KRILKSLHLDEKQ 136 >gi|172060415|ref|YP_001808067.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6] gi|171992932|gb|ACB63851.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6] Length = 787 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A + P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|323527814|ref|YP_004229967.1| UvrD/REP helicase [Burkholderia sp. CCGE1001] gi|323384816|gb|ADX56907.1| UvrD/REP helicase [Burkholderia sp. CCGE1001] Length = 699 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E ST Sbjct: 117 PQFSIMDSDDCFGMIQEQVGST 138 >gi|269115227|ref|YP_003302990.1| ATP-dependent helicase [Mycoplasma hominis] gi|268322852|emb|CAX37587.1| ATP-dependent helicase [Mycoplasma hominis ATCC 23114] Length = 745 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 39/157 (24%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 DL Q KS + P R + A AGSGKT +L ++ L+ P+ +L LT + Sbjct: 6 DLNEQQKSAVIYNEGPLR---IIAGAGSGKTRVLTYKIAYLIQKLGVLPNRILALTFSNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++ + N S++S + Sbjct: 63 AANEMKQRVFNLLA--------------------EDNPSNLSPY---------------I 87 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T HA C I+++ + F I DE K++++ Sbjct: 88 STFHAMCAKILRKEIYNFGYENDFQILDELDQKEILK 124 >gi|114330786|ref|YP_747008.1| UvrD/REP helicase [Nitrosomonas eutropha C91] gi|114307800|gb|ABI59043.1| ATP-dependent DNA helicase UvrD [Nitrosomonas eutropha C91] Length = 748 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L++ EQL A P +SA + A AGSGKT +L R+ LL + P LL +T T Sbjct: 4 LLTDLNPEQLEAVTWPHQSALILAGAGSGKTRVLTTRIAYLLQSGLTQPQNLLAVTFTNK 63 Query: 74 AAAEMSHRV 82 AA EM R+ Sbjct: 64 AAREMVARI 72 >gi|262037611|ref|ZP_06011062.1| ATP-dependent nuclease subunit A [Leptotrichia goodfellowii F0264] gi|261748356|gb|EEY35744.1| ATP-dependent nuclease subunit A [Leptotrichia goodfellowii F0264] Length = 1055 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 17/188 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT--AWSHLS 93 + A+AG+GKT+ L + L+ ++ +T TK A AE+ R+ + + A+ Sbjct: 6 LKASAGTGKTYRLSLEYIANLIKGISYKNIIVMTFTKKATAEIKDRIYDFLYQIAFEKYK 65 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 E L + +I G + + D + +++ +++ +++ TI F I + I Sbjct: 66 FEELEKSLKEIYGFQGGEIDKNSLQNIYFEMIKNKDEIRIYTIDGFTNQIFKN-----TI 120 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIM---LDNNEELKKAFYEILEISNDEDIE---TL 207 F I E ++E I+ L+NNE +K + E +DI+ Sbjct: 121 APFFGIYGYET----LDEEDDGFYEDILVKILNNNEYFEKFSFVFEEKKERKDIKKYVKF 176 Query: 208 ISDIISNR 215 I +II+ R Sbjct: 177 IKNIINIR 184 >gi|19552081|ref|NP_600083.1| helicase [Corynebacterium glutamicum ATCC 13032] gi|62389744|ref|YP_225146.1| ATP-dependent helicase PcrA [Corynebacterium glutamicum ATCC 13032] gi|21323620|dbj|BAB98247.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum ATCC 13032] gi|41325079|emb|CAF19560.1| ATP-DEPENDENT HELICASE PCRA [Corynebacterium glutamicum ATCC 13032] Length = 763 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 64/158 (40%), Gaps = 41/158 (25%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DLI +Q A + S + A AGSGKT +L +R+ L+ HP +L +T T Sbjct: 12 DLIDGLNEQQRAAVEHIGSPLLIVAGAGSGKTAVLTRRIAYLMRYRGVHPQQILAITFTN 71 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV +++ P M Sbjct: 72 KAAAEMRERVSQLV---------------------GPVAERMW----------------- 93 Query: 133 VQTIHAFCEAIM-QQFPLEANITSHFAIADEEQSKKLI 169 V T H+ C I+ QQ L + ++F I D + S++L+ Sbjct: 94 VATFHSVCVRILRQQAQLVEGLNTNFTIYDSDDSRRLL 131 >gi|145219316|ref|YP_001130025.1| ATP-dependent DNA helicase PcrA [Prosthecochloris vibrioformis DSM 265] gi|145205480|gb|ABP36523.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeovibrioides DSM 265] Length = 728 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 39/159 (24%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72 DL+ + Q A+ T V A AGSGKT ++ R+ L+ P+ +L LT T Sbjct: 3 DLLQDLSAVQRDAASATEGPVMVLAGAGSGKTRVITYRIANLIGNQGVPAGNILALTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM HRV D++L P S GGL Sbjct: 63 KAAGEMRHRV-----------DQLLG----------PGSS----------------GGLW 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 + T H+ +++++ + F+I D + SK LI + Sbjct: 86 IGTFHSVFARLLREYIDRLGYSRSFSIFDSDDSKSLIRQ 124 >gi|326771959|ref|ZP_08231244.1| ATP-dependent DNA helicase PcrA [Actinomyces viscosus C505] gi|326638092|gb|EGE38993.1| ATP-dependent DNA helicase PcrA [Actinomyces viscosus C505] Length = 957 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 53/137 (38%), Gaps = 43/137 (31%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ L+ A P +L +T T AAAEM RV Sbjct: 129 IIAGAGSGKTRVLTHRIAHLIATGRARPGEILAITFTNKAAAEMRERV------------ 176 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIHAFCEAIMQQFPLEAN 152 T L P G + V T H+ C I+++ A Sbjct: 177 ----------------------------TALVGPAGERMWVSTFHSACVRILRREHEAAG 208 Query: 153 ITSHFAIADEEQSKKLI 169 + S F+I D S +LI Sbjct: 209 LRSTFSIYDAADSTRLI 225 >gi|325860071|ref|ZP_08173197.1| ATP-dependent helicase PcrA [Prevotella denticola CRIS 18C-A] gi|325482356|gb|EGC85363.1| ATP-dependent helicase PcrA [Prevotella denticola CRIS 18C-A] Length = 842 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 Q+ E I L + +S++ T + V A AGSGKT +L ++ LL P +L Sbjct: 4 QDREEEI-LSALNESQRAAVEYCTGPSLVIAGAGSGKTRVLTYKIAYLLNKGLSPWNILA 62 Query: 68 LTHTKAAAAEMSHRVLEIITA 88 LT T AA EM R+ I TA Sbjct: 63 LTFTNKAAREMKERIARITTA 83 >gi|303233093|ref|ZP_07319766.1| putative ATP-dependent DNA helicase PcrA [Atopobium vaginae PB189-T1-4] gi|302480678|gb|EFL43765.1| putative ATP-dependent DNA helicase PcrA [Atopobium vaginae PB189-T1-4] Length = 873 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 64/156 (41%), Gaps = 47/156 (30%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ ++ P +L +T T AA EM R LE++ + Sbjct: 83 VLAGAGSGKTRVLTHRIAYIIQHEQVQPWRILAITFTNKAAKEMRER-LEMLLS------ 135 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ET G+ V T HA C I+++ T Sbjct: 136 -------------------------------ETMRGMWVCTFHAMCSRILREHADVLGYT 164 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 S+F + D+ SK+L++ +IM D N + KK Sbjct: 165 SNFVVYDDSDSKRLVK--------TIMDDLNLDTKK 192 >gi|295396697|ref|ZP_06806843.1| ATP-dependent DNA helicase PcrA [Brevibacterium mcbrellneri ATCC 49030] gi|294970443|gb|EFG46372.1| ATP-dependent DNA helicase PcrA [Brevibacterium mcbrellneri ATCC 49030] Length = 769 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 43/141 (30%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ +L AHP +L +T T AA EM RV ++ Sbjct: 49 IVAGAGSGKTTVLTRRIAHILATGQAHPGQILAITFTNKAAREMLDRVTSLVG------- 101 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NI 153 +AR G+ + T H+ C I+++ EA + Sbjct: 102 --------------------ERAR-----------GMWISTFHSACVRILRR---EARDR 127 Query: 154 TSHFAIADEEQSKKLIEEAKK 174 TS+F+I D + S +LI + K Sbjct: 128 TSNFSIYDAQDSLRLITQVTK 148 >gi|255009003|ref|ZP_05281129.1| ATP-dependent helicase [Bacteroides fragilis 3_1_12] gi|313146743|ref|ZP_07808936.1| ATP-dependent helicase [Bacteroides fragilis 3_1_12] gi|313135510|gb|EFR52870.1| ATP-dependent helicase [Bacteroides fragilis 3_1_12] Length = 1057 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 4/125 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + H+ D Sbjct: 9 ASAGSGKTFTLATEYIKLLIQNPRAYRQILAVTFTNKATAEMKERILSQLYG-IHIVDPD 67 Query: 97 LSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A + +I + D A L +L +V+TI +F +++M+ E ++ Sbjct: 68 SDAYLKRIIAETGRSEDEIRKTAGIALSYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127 Query: 155 SHFAI 159 + I Sbjct: 128 PNLNI 132 >gi|171319519|ref|ZP_02908620.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5] gi|171095259|gb|EDT40249.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5] Length = 787 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A + P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|170702107|ref|ZP_02893019.1| UvrD/REP helicase [Burkholderia ambifaria IOP40-10] gi|170132982|gb|EDT01398.1| UvrD/REP helicase [Burkholderia ambifaria IOP40-10] Length = 787 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A + P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|56808113|ref|ZP_00365902.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Streptococcus pyogenes M49 591] Length = 405 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 19/151 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L +L L T T AA E+ R+ + L + Sbjct: 58 VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 I A+ T Q K L L++ + T+ AF + ++ ++ I+S Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISS 158 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 F I ++ + ++++ S L S ++ E Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 189 >gi|326383701|ref|ZP_08205386.1| ATP-dependent DNA helicase PcrA [Gordonia neofelifaecis NRRL B-59395] gi|326197465|gb|EGD54654.1| ATP-dependent DNA helicase PcrA [Gordonia neofelifaecis NRRL B-59395] Length = 834 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 40/136 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ LL + P +L +T T AAAEM RV++++ Sbjct: 41 IVAGAGSGKTAVLTRRIAFLLAERDVTPGQILAITFTNKAAAEMRERVIDLV-------- 92 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 P + M V T H+ C I++ Q L N Sbjct: 93 -------------GPRAAYMW-----------------VSTFHSTCVRILRAQSGLLGNR 122 Query: 154 TSHFAIADEEQSKKLI 169 S+F+I D + S++L+ Sbjct: 123 NSNFSIYDADDSRRLL 138 >gi|323978469|gb|EGB73552.1| UvrD/REP helicase [Escherichia coli TW10509] Length = 632 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 4/70 (5%) Query: 14 IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID +SQ++ E + A P A V A+AGSGKT +L +RV R +L N+ +++ LT T Sbjct: 2 IDNLSQSQIEVVRA--PMGGAIQVLASAGSGKTRVLTERV-RFILNNSARGSVVALTFTN 58 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 59 KAADEMLERL 68 >gi|157962241|ref|YP_001502275.1| exodeoxyribonuclease V subunit beta [Shewanella pealeana ATCC 700345] gi|157847241|gb|ABV87740.1| exodeoxyribonuclease V, beta subunit [Shewanella pealeana ATCC 700345] Length = 1238 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 10/140 (7%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEII- 86 S + A+AG+GKT + +RLLL + + L C +T T AA E+ R+ + I Sbjct: 40 SRLIEASAGTGKTFTIAGLYVRLLLGHGIEAPLTCEQILVVTFTNAATGELRDRIRKKIQ 99 Query: 87 -TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + E+ I + P S + AR L L++ + TIH FC+ I+ Sbjct: 100 LAYRCFIGLEVDDELINSLYQATPEAS-LPIARKRLDLALKSLDEAAIFTIHGFCQRILA 158 Query: 146 QFPLEANI--TSHFAIADEE 163 E+++ S F + D E Sbjct: 159 DMAFESSLLFESEFTLDDSE 178 >gi|90021650|ref|YP_527477.1| DNA helicase/exodeoxyribonuclease V subunit A [Saccharophagus degradans 2-40] gi|89951250|gb|ABD81265.1| DNA helicase/exodeoxyribonuclease V, subunit A [Saccharophagus degradans 2-40] Length = 1155 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 98/201 (48%), Gaps = 17/201 (8%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A D ++S V+A AGSGKT +L RVL+LL P +L +T T+ AAAEM R++ + Sbjct: 12 ALDISQSWVVTAPAGSGKTGLLTLRVLKLLAVVESPEEILAITFTRKAAAEMLERIVGAL 71 Query: 87 TAWSHLSDEILSAE----ITKIQGK------KPNKSDMSKARHLLITILETPGGLKVQTI 136 L+ A+ I +I + + + +++ + +L+ LK+ TI Sbjct: 72 IEADELTRNCSPAQALEKINQIDDEHTLRFMQSAYAALARDKTQGWNLLQNTHRLKITTI 131 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 FC + Q P+ + + I DE + L E+A + + S E+ A ++L Sbjct: 132 DGFCRELSNQLPMLSGAGVNPQICDE--PRLLYEQAVMNLIESYKTGACEQ---AINQVL 186 Query: 197 -EISNDED-IETLISDIISNR 215 + ND D ++ L+ D++ +R Sbjct: 187 THLDNDLDRVKRLLVDLLGSR 207 >gi|83319825|ref|YP_424677.1| ATP-dependent DNA helicase pcrA [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|90110084|sp|P45612|UVRD_MYCCT RecName: Full=Probable DNA helicase II homolog gi|83283711|gb|ABC01643.1| ATP-dependent DNA helicase pcrA [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 722 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 47/172 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P R + A AGSGKT ++ ++ L+ N PS +L +T T AA EM RVL+I Sbjct: 24 PVR---IIAGAGSGKTRVITTKIAYLIEKQNIDPSRILAVTFTNKAAKEMKERVLQI--- 77 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 N S ++P + T H++C +++ Sbjct: 78 --------------------TNNS------------FKSPF---ISTFHSWCSKVLRIDG 102 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL---KKAFYEILE 197 + F I D + K++I+ A K ++I L N++ KK Y+I E Sbjct: 103 KHIGLEDKFLIIDSDDQKRIIKSALKE--SNIELSENDKKTFDKKILYKIKE 152 >gi|146296855|ref|YP_001180626.1| UvrD/REP helicase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410431|gb|ABP67435.1| ATP-dependent DNA helicase PcrA [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 714 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 + + EQL A T V A AGSGKT ++ R+ +L + A PS +L +T T A Sbjct: 4 LKELNKEQLEAVLSTEGPLLVLAGAGSGKTRVITYRIAYILNMGLAKPSNILAITFTNKA 63 Query: 75 AAEMSHRVLEIITAWS 90 A EM R+ ++++ S Sbjct: 64 ADEMKERIKKLVSVES 79 >gi|327314684|ref|YP_004330121.1| putative ATP-dependent helicase PcrA [Prevotella denticola F0289] gi|326946329|gb|AEA22214.1| putative ATP-dependent helicase PcrA [Prevotella denticola F0289] Length = 842 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 Q+ E I L + +S++ T + V A AGSGKT +L ++ LL P +L Sbjct: 4 QDREEDI-LSALNESQRAAVEYCTGPSLVIAGAGSGKTRVLTYKIAYLLNKGLSPWNILA 62 Query: 68 LTHTKAAAAEMSHRVLEIITA 88 LT T AA EM R+ I TA Sbjct: 63 LTFTNKAAREMKERIARITTA 83 >gi|145631236|ref|ZP_01787009.1| DNA helicase II [Haemophilus influenzae R3021] gi|144983163|gb|EDJ90658.1| DNA helicase II [Haemophilus influenzae R3021] Length = 726 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ +T Sbjct: 4 SELLDGLNDKQHEAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61 Query: 70 HTKAAAAEMSHRV 82 T AAAEM HR+ Sbjct: 62 FTNKAAAEMRHRI 74 >gi|218261884|ref|ZP_03476569.1| hypothetical protein PRABACTJOHN_02240 [Parabacteroides johnsonii DSM 18315] gi|218223732|gb|EEC96382.1| hypothetical protein PRABACTJOHN_02240 [Parabacteroides johnsonii DSM 18315] Length = 261 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 E + +++++ E ++ +D + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 24 EYLKQLNESQREAVVYTDG--PSLVVAGAGSGKTRVLTYKIAYLLRQGLPPQSILALTFT 81 Query: 72 KAAAAEMSHRV 82 AA EM R+ Sbjct: 82 NKAAREMKERI 92 >gi|254428788|ref|ZP_05042495.1| UvrD/REP helicase domain protein [Alcanivorax sp. DG881] gi|196194957|gb|EDX89916.1| UvrD/REP helicase domain protein [Alcanivorax sp. DG881] Length = 757 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 51/218 (23%), Positives = 84/218 (38%), Gaps = 45/218 (20%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLT 69 + ID ++ + + + A D R V A AGSGKT +LV R+ ++ A P +L +T Sbjct: 42 TSLIDGLNPAQRDAVAADD--RHLLVLAGAGSGKTRVLVHRIAWQIATEQASPFGILAVT 99 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ +++ DMS Sbjct: 100 FTNKAAAEMRGRIEQLL--------------------------DMSA------------D 121 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ V T H +++ EA + F I D + +LI+ K + LD Sbjct: 122 GMWVGTFHGIAHRLLRAHWQEAGLPQGFQIIDADDQIRLIKRVSK----ELGLDEQRWPA 177 Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 + + DE + D+ + AL + +F+Y Sbjct: 178 RQATWFINGQKDEGLRARHMDVGGDLFALTMQKIYFAY 215 >gi|260881142|ref|ZP_05893318.1| ATP-dependent DNA helicase PcrA [Mitsuokella multacida DSM 20544] gi|260849631|gb|EEX69638.1| ATP-dependent DNA helicase PcrA [Mitsuokella multacida DSM 20544] Length = 773 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 29/51 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ LL P ++L +T T AA EM RV +I Sbjct: 28 IMAGAGSGKTKVLTCRIANLLAQGVAPYSILAITFTNKAATEMRERVDRMI 78 >gi|149928113|ref|ZP_01916360.1| UvrD/REP helicase [Limnobacter sp. MED105] gi|149823199|gb|EDM82436.1| UvrD/REP helicase [Limnobacter sp. MED105] Length = 743 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 + L+ EQL A + P SA + A AGSGKT +L R+ L+ P+ +L +T T Sbjct: 1 MSLLDSLNPEQLAAVTLPRESALILAGAGSGKTKVLTARIAWLIQTGQVGPNGVLAVTFT 60 Query: 72 KAAAAEMSHRV 82 AA EM HR+ Sbjct: 61 NKAAKEMLHRI 71 >gi|150400668|ref|YP_001324434.1| UvrD/REP helicase [Methanococcus aeolicus Nankai-3] gi|150013371|gb|ABR55822.1| UvrD/REP helicase [Methanococcus aeolicus Nankai-3] Length = 751 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 26/114 (22%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 WV A GSGKT +LV R L+L+ + +P +++ T TK A+ + R+++ T L Sbjct: 21 WVVAGPGSGKTEVLVVRTLKLIFVDGVNPKSIILTTFTKKASQNLFDRIIKYSTKLYDLY 80 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 E+ + I +I L+V T+H+ C IM+++ Sbjct: 81 PELKGSSI-EIH------------------------SLRVGTLHSLCNDIMKEY 109 >gi|329955053|ref|ZP_08296034.1| UvrD/REP helicase [Bacteroides clarus YIT 12056] gi|328526343|gb|EGF53358.1| UvrD/REP helicase [Bacteroides clarus YIT 12056] Length = 1128 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 11/130 (8%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95 A+AGSGKT L ++LL+ N +L +T T A AEM R+L ++ W +D Sbjct: 8 ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILTQLYGIWK--ADP 65 Query: 96 ILSAEITKIQGKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 A + +I+ + N S +S +A L +L +V+TI +F +++M+ Sbjct: 66 ASDAYLKRIK-EDLNSSSLSDKELRQRAGMALQYMLHDYSRFRVETIDSFFQSVMRNLAR 124 Query: 150 EANITSHFAI 159 E ++ + I Sbjct: 125 ELELSPNLNI 134 >gi|323453081|gb|EGB08953.1| hypothetical protein AURANDRAFT_63493 [Aureococcus anophagefferens] Length = 787 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 37/135 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A AGSGKT L +RV R + + A P +L LT + AA E+ R+ + HL + Sbjct: 22 IVAGAGSGKTETLTRRVARAISSGARPEGVLVLTFSNKAARELRGRLAK------HLGEA 75 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + AR ++ T H+FC ++++F EA + Sbjct: 76 V-------------------AAR------------VECATFHSFCLRLLRRFGREAGLGP 104 Query: 156 HFAIADEEQSKKLIE 170 F+I + + L++ Sbjct: 105 DFSIFGDAAQRALVK 119 >gi|306827618|ref|ZP_07460898.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes ATCC 10782] gi|304430181|gb|EFM33210.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes ATCC 10782] Length = 1222 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 19/155 (12%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 ++ VSA+AGSGKT ++V+R+L +L L T T AA E+ R+ + Sbjct: 54 QNVLVSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENK 107 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 L +I A+ T Q K L L++ + T+ AF + ++ ++ Sbjct: 108 LYSQI--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSI 154 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 I+S F I ++ + ++++ S L S ++ E Sbjct: 155 GISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 189 >gi|198284778|ref|YP_002221099.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666705|ref|YP_002427463.1| DNA helicase II [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249299|gb|ACH84892.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518918|gb|ACK79504.1| DNA helicase II [Acidithiobacillus ferrooxidans ATCC 23270] Length = 709 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 32/58 (55%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 P+ A V A AGSGKT +L R+ LL + +P +L +T T AA M R+ ++ Sbjct: 18 PSGPALVLAGAGSGKTRVLTSRIAHLLEGDVYPGAILAVTFTNKAARAMRGRLDGMVA 75 >gi|84687759|ref|ZP_01015631.1| Possible DNA helicase [Maritimibacter alkaliphilus HTCC2654] gi|84664260|gb|EAQ10752.1| Possible DNA helicase [Rhodobacterales bacterium HTCC2654] Length = 1569 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 2/81 (2%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65 Q ++E +D + T Q++ D ++ V A GSGKT +LV RV L+ + P+ + Sbjct: 945 QTYAEIVDDLGNTTQAQIVRDDREQTNVLVLAGPGSGKTRVLVHRVAYLVRIKREDPNGI 1004 Query: 66 LCLTHTKAAAAEMSHRVLEII 86 L L + + AAAE+ R+ +I Sbjct: 1005 LVLAYNRHAAAEIRERLRRLI 1025 >gi|332173435|gb|AEE22689.1| exodeoxyribonuclease V, beta subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1315 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 16/151 (10%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP---STLLCLTHTKAAAAEMSHRVLE-- 84 T ++ + A+AG+GKT+ +V LRLLL + P +L +T T AA AE+ R+ + Sbjct: 12 TGASLIEASAGTGKTYTIVNLYLRLLLGDECTPLSVDKILVVTFTNAATAELKQRIRQRL 71 Query: 85 ---IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 ++H SD+ E T+ + ++ H L+ ++ V TIH FC+ Sbjct: 72 QRAYFDFYAHKSDD----EFTQYLIDRSENIELDC--HRLLLAIKQMDDASVFTIHGFCQ 125 Query: 142 AIMQQFPLEAN-ITSHFAIADEEQSKKLIEE 171 ++ E+ + + DE Q KL E Sbjct: 126 RMLSLHAFESGAMYEQSLVLDESQWLKLAVE 156 >gi|291302043|ref|YP_003513321.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728] gi|290571263|gb|ADD44228.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728] Length = 1041 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 3/75 (4%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAE 77 T+ + P R + A AGSGKT + RV+ L+AN A P +L LT T+ AAAE Sbjct: 22 TEQQATAIEAPLRPQLIVAGAGSGKTGTMASRVV-WLIANGYARPEQILGLTFTRKAAAE 80 Query: 78 MSHRVLEIITAWSHL 92 ++ R+ E + S L Sbjct: 81 LASRIRERLARLSGL 95 >gi|187736051|ref|YP_001878163.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835] gi|187426103|gb|ACD05382.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835] Length = 1054 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 4/76 (5%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIIT 87 P + +SA+AG+GKT+ L R L LL N+ HP L+ +T T+ AA E R+L + Sbjct: 3 PLTNMLISASAGTGKTYQLSLRFLGLLALNSGNHPERLIAITFTRKAAGEFKDRILTDLA 62 Query: 88 AWSHLSDEILSAEITK 103 A + +DE +A + + Sbjct: 63 AGA--TDEAGAARLKE 76 >gi|150377933|ref|YP_001314528.1| UvrD/REP helicase [Sinorhizobium medicae WSM419] gi|150032480|gb|ABR64595.1| UvrD/REP helicase [Sinorhizobium medicae WSM419] Length = 689 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 30/48 (62%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 A AGSGKT+ L RV L++ A P +L +T ++ AA EM+ RV I Sbjct: 36 AGAGSGKTNTLAHRVAHLIVNGADPRRILLMTFSRRAAYEMTRRVKSI 83 >gi|254442638|ref|ZP_05056114.1| UvrD/REP helicase subfamily [Verrucomicrobiae bacterium DG1235] gi|198256946|gb|EDY81254.1| UvrD/REP helicase subfamily [Verrucomicrobiae bacterium DG1235] Length = 665 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 27/50 (54%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 A AGSGKT L RV LL P +L LT T AA EM RV E+ T Sbjct: 42 AGAGSGKTRTLTYRVAYLLSQGVRPGEILLLTFTNKAAKEMLSRVEELTT 91 >gi|77359094|ref|YP_338669.1| DNA-dependent helicase II [Pseudoalteromonas haloplanktis TAC125] gi|76874005|emb|CAI85226.1| DNA-dependent ATPase I and helicase II; highly similar to PSHA_1_2804 [Pseudoalteromonas haloplanktis TAC125] Length = 721 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 45/193 (23%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +D ++ + + + A P ++ V A AGSGKT +LV R+ L+ + A ++ +T Sbjct: 4 SQLLDGLNDKQRDAVAA--PLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASTYSIFAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV +E L A + G Sbjct: 62 FTNKAAKEMRTRV-----------EETLKAPV---------------------------G 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ + T H I++ EA + F I D + ++I K L S+ +D+ + Sbjct: 84 GMWIGTFHGLSHRILRAHHREAKLPEAFQILDSDDQLRMI----KRLLKSMNIDDKKWPA 139 Query: 190 KAFYEILEISNDE 202 K F + DE Sbjct: 140 KQFGWYISAKKDE 152 >gi|294785780|ref|ZP_06751068.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_27] gi|294487494|gb|EFG34856.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_27] Length = 737 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 58/145 (40%), Gaps = 39/145 (26%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 AS S + A AGSGKT + R+ ++ P ++L +T T AA EM RV E+ Sbjct: 17 ASQIDGSILILAGAGSGKTRTITYRIAHMIENVGISPYSILAVTFTNKAAKEMRERVEEL 76 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + D++KA + T H+F +++ Sbjct: 77 V-------------------------GDIAKA-------------CTISTFHSFGMRLLR 98 Query: 146 QFPLEANITSHFAIADEEQSKKLIE 170 + E S+F I D + K++++ Sbjct: 99 MYAKEVEYNSNFTIYDTDDQKRIVK 123 >gi|170695890|ref|ZP_02887030.1| UvrD/REP helicase [Burkholderia graminis C4D1M] gi|170139188|gb|EDT07376.1| UvrD/REP helicase [Burkholderia graminis C4D1M] Length = 787 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMSRL 72 >gi|318040198|ref|ZP_07972154.1| UvrD/REP helicase [Synechococcus sp. CB0101] Length = 1204 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 17/144 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV-------LEI 85 + A+AG+GKT L VLRLL P LL +T T AAAAE+ R+ L++ Sbjct: 20 LEASAGTGKTFALAHLVLRLLSEGRAPLAVEQLLVVTFTDAAAAELRDRIARRLQDALQL 79 Query: 86 ITAWSHLS--DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + S + D L+A + + P LE + TIH FC Sbjct: 80 LEPGSSATPGDAPLAAWLEALGPNPPALLRGRLL-----LALEQLDRADITTIHGFCRRT 134 Query: 144 MQQFPLEANITSHFAIADEEQSKK 167 +Q+ LEA + ++ E + ++ Sbjct: 135 LQRQALEAGLGPAVSLESEGRERR 158 >gi|289766345|ref|ZP_06525723.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D11] gi|289717900|gb|EFD81912.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D11] Length = 735 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 39/155 (25%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85 AS S + A AGSGKT + R+ ++ P ++L +T T AA EM RV E+ Sbjct: 15 ASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVTFTNKAAKEMRERVEEL 74 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + D++KA + T H+F +++ Sbjct: 75 V-------------------------GDIAKA-------------CTISTFHSFGMRLLR 96 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 + E S+F I D + K++++ K SI Sbjct: 97 MYGKEVGYNSNFTIYDTDDQKRIVKAILKGQNLSI 131 >gi|5734491|emb|CAB52698.1| DNA helicase [Prochlorococcus marinus] Length = 519 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 22/146 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+ PS +L +T T AA EM R LEI Sbjct: 28 VVAGAGSGKTRALTHRIAHLISEYKVEPSEILAVTFTNKAAREMKDR-LEI--------- 77 Query: 95 EILSAEITKIQGKKPNKS-DMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQQFPLEAN 152 +L+ ++ KI+ +P + +S L I E + + T HA ++ +F +E Sbjct: 78 -LLAQKLAKIEFGQPFSTLKISIQSELRTRIYREVIKEIWIGTFHALFARLL-RFDIEKY 135 Query: 153 I-------TSHFAIADEEQSKKLIEE 171 + T HF+I DE+ + LI+E Sbjct: 136 VDKEGLKWTRHFSIYDEKDALSLIKE 161 >gi|323526768|ref|YP_004228921.1| UvrD/REP helicase [Burkholderia sp. CCGE1001] gi|323383770|gb|ADX55861.1| UvrD/REP helicase [Burkholderia sp. CCGE1001] Length = 787 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMSRL 72 >gi|313906068|ref|ZP_07839420.1| UvrD/REP helicase [Eubacterium cellulosolvens 6] gi|313469113|gb|EFR64463.1| UvrD/REP helicase [Eubacterium cellulosolvens 6] Length = 653 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 32/50 (64%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A GSGKT ++ R +L+ PS++L +T T+AAAA+M R L++ Sbjct: 20 VLAGPGSGKTAVITGRTAQLIQNGISPSSILVVTFTRAAAAQMKGRFLKM 69 >gi|296532031|ref|ZP_06894810.1| ATP-dependent DNA helicase PcrA [Roseomonas cervicalis ATCC 49957] gi|296267646|gb|EFH13492.1| ATP-dependent DNA helicase PcrA [Roseomonas cervicalis ATCC 49957] Length = 634 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 4/70 (5%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTK 72 +D ++ + +LA P V A AGSGKT L +RV L+L P LLC+T T Sbjct: 6 LDGLNPAQRAAVLAEAPV---LVLAGAGSGKTETLTRRVADLILRRGEAPDRLLCITFTT 62 Query: 73 AAAAEMSHRV 82 AAAEM R+ Sbjct: 63 KAAAEMRTRL 72 >gi|294141179|ref|YP_003557157.1| exodeoxyribonuclease V subunit beta [Shewanella violacea DSS12] gi|293327648|dbj|BAJ02379.1| exodeoxyribonuclease V, beta subunit [Shewanella violacea DSS12] Length = 1230 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 18/144 (12%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVL-EII 86 S + A+AG+GKT+ + +RLLL + L C +T T AA E+ R+ +I Sbjct: 22 SRLIEASAGTGKTYTIAGLYVRLLLGHGIDKPLTCQQILVVTFTNAATGELRDRIRNKIQ 81 Query: 87 TAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 A+ H DE+L++ + P +S A L L++ + TIH FC+ Sbjct: 82 LAYRHFIGIDTGDELLAS----LHSATP-ESARPLALKRLDLALKSLDEASIFTIHGFCQ 136 Query: 142 AIMQQFPLEANI--TSHFAIADEE 163 I+ E+++ S F + D E Sbjct: 137 RILADMAFESSLLFESEFTLDDSE 160 >gi|237744963|ref|ZP_04575444.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 7_1] gi|229432192|gb|EEO42404.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 7_1] Length = 735 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 39/155 (25%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85 AS S + A AGSGKT + R+ ++ P ++L +T T AA EM RV E+ Sbjct: 15 ASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVTFTNKAAKEMRERVEEL 74 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + D++KA + T H+F +++ Sbjct: 75 V-------------------------GDVAKA-------------CTISTFHSFGMRLLR 96 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 + E S+F I D + K++++ K SI Sbjct: 97 MYGKEVGYNSNFTIYDTDDQKRIVKAILKGQNLSI 131 >gi|256028421|ref|ZP_05442255.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D11] Length = 737 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 39/155 (25%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85 AS S + A AGSGKT + R+ ++ P ++L +T T AA EM RV E+ Sbjct: 17 ASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVTFTNKAAKEMRERVEEL 76 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + D++KA + T H+F +++ Sbjct: 77 V-------------------------GDIAKA-------------CTISTFHSFGMRLLR 98 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 + E S+F I D + K++++ K SI Sbjct: 99 MYGKEVGYNSNFTIYDTDDQKRIVKAILKGQNLSI 133 >gi|168069914|ref|XP_001786623.1| predicted protein [Physcomitrella patens subsp. patens] gi|162660850|gb|EDQ48563.1| predicted protein [Physcomitrella patens subsp. patens] Length = 799 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 25/115 (21%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V+A AGSGKT +LV+R++R +L + LL T TKAAAAEM R+ + + Sbjct: 193 VAAAAGSGKTAVLVERIIRKILNEEQGFSVDRLLVATFTKAAAAEMRERIRDAL------ 246 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 D L K P + + + LL G + T+H+FC ++++ Sbjct: 247 -DRQLE--------KDPENTHLRRQLSLL-------GRASITTLHSFCLEVIRRL 285 >gi|139474037|ref|YP_001128753.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes str. Manfredo] gi|251764552|sp|A2RFA8|ADDA_STRPG RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|134272284|emb|CAM30537.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes str. Manfredo] Length = 1210 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 19/151 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L +L L T T AA E+ R+ + L + Sbjct: 46 VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 99 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 I A+ T Q K L L++ + T+ AF + ++ ++ I+S Sbjct: 100 I--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISS 146 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 F I ++ + ++++ S L S ++ E Sbjct: 147 QFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 177 >gi|91217344|ref|ZP_01254304.1| ATP-dependent DNA helicase [Psychroflexus torquis ATCC 700755] gi|91184452|gb|EAS70835.1| ATP-dependent DNA helicase [Psychroflexus torquis ATCC 700755] Length = 772 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 + I +++ + E +L D V A AGSGKT +L R+ L+ +L LT T Sbjct: 3 DYIKQLNEAQREAVLQKDG--PMIVIAGAGSGKTRVLTYRIAYLMSEGVDSFNILALTFT 60 Query: 72 KAAAAEMSHRVLEIITA 88 AA EM +R+ +I+ A Sbjct: 61 NKAAKEMKNRISKIVGA 77 >gi|296327497|ref|ZP_06870043.1| ATP-dependent DNA helicase PcrA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155323|gb|EFG96094.1| ATP-dependent DNA helicase PcrA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 739 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 39/145 (26%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 AS S + A AG+GKT + R+ ++ P ++L +T T AA EM RV Sbjct: 19 ASQIDGSILILAGAGAGKTRTITYRIAHMIENVGISPYSILAVTFTNKAAKEMRERV--- 75 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 E L +I K+ + T H+F +++ Sbjct: 76 ---------EDLVGDIAKV--------------------------CTISTFHSFGMRLLR 100 Query: 146 QFPLEANITSHFAIADEEQSKKLIE 170 + EA S+F I D + KK+++ Sbjct: 101 MYAKEAGYNSNFTIYDTDDQKKIVK 125 >gi|291286461|ref|YP_003503277.1| exodeoxyribonuclease V, beta subunit [Denitrovibrio acetiphilus DSM 12809] gi|290883621|gb|ADD67321.1| exodeoxyribonuclease V, beta subunit [Denitrovibrio acetiphilus DSM 12809] Length = 1149 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 71/137 (51%), Gaps = 15/137 (10%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA---- 75 K +LL + T ++ + ANAG+GKT+ + R++ +P ++L +T+T AA Sbjct: 4 KQMELLTAPLTGTSLIEANAGTGKTYNITALFTRMVTELQYPVESILVVTYTNAAVSDLK 63 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP------NKSDMSKARHLLITILETPG 129 A++ R+ +++ A L D S EIT ++ + P K +++K LL + Sbjct: 64 AKIYKRLNDVLLAMVSLRD---SVEIT-MEDEFPLDYALKRKENLTKDIKLLKGAVRDFD 119 Query: 130 GLKVQTIHAFCEAIMQQ 146 + TIH FC+ ++++ Sbjct: 120 QCAIFTIHGFCQRMLKE 136 >gi|326203600|ref|ZP_08193464.1| UvrD/REP helicase [Clostridium papyrosolvens DSM 2782] gi|325986420|gb|EGD47252.1| UvrD/REP helicase [Clostridium papyrosolvens DSM 2782] Length = 695 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 27/44 (61%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 A GSGKT ++V RV L+ + +P ++L LT KAA EM R Sbjct: 32 AGPGSGKTTVIVNRVYNLIKSGINPKSILTLTFNKAAQLEMDRR 75 >gi|298530797|ref|ZP_07018199.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1] gi|298510171|gb|EFI34075.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1] Length = 713 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 39/161 (24%) Query: 14 IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID QL A TR V A AGSGKT +V R+ L+ P ++L LT T+ Sbjct: 2 IDYEKSLNPAQLEAVTTTRGPVLVIAGAGSGKTRTIVYRLAYLVEQGVPPESILLLTFTR 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA++M R + E+L+ E+ + G Sbjct: 62 KAASQMLRR-----------AGELLNREMGMVSGG------------------------- 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T H F I+++F F++ D +++L + + Sbjct: 86 --TFHGFSYMILKKFAPALGFPQGFSVMDAADAEELFKGVR 124 >gi|21910050|ref|NP_664318.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes MGAS315] gi|81479324|sp|Q8K815|ADDA_STRP3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|21904241|gb|AAM79121.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes MGAS315] Length = 1222 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 19/151 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L +L L T T AA E+ R+ + L + Sbjct: 58 VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 I A+ T Q K L L++ + T+ AF + ++ ++ I+S Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISS 158 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 F I ++ + ++++ S L S ++ E Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 189 >gi|315608146|ref|ZP_07883138.1| ATP-dependent DNA helicase PcrA [Prevotella buccae ATCC 33574] gi|315250115|gb|EFU30112.1| ATP-dependent DNA helicase PcrA [Prevotella buccae ATCC 33574] Length = 819 Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 72/188 (38%), Gaps = 43/188 (22%) Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL+S+ Q A + + V A AGSGKT +L ++ LL P +L LT T Sbjct: 2 VDLLSELNDSQREAVEYIDGPSLVIAGAGSGKTRVLTYKIAYLLQRGVRPYNILALTFTN 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +++ L+ L+ Sbjct: 62 KAATEMKARIGKLVGERDALA-------------------------------------LR 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ I++ S+F I DE S+ LI+ K A NE++ + Sbjct: 85 MGTFHSVFSRILRVEAAHIGYNSNFTIYDESDSRSLIKTIVKELAAG-----NEKMDEKQ 139 Query: 193 YEILEISN 200 Y+ + N Sbjct: 140 YKSATVHN 147 >gi|312898542|ref|ZP_07757932.1| ATP-dependent DNA helicase PcrA [Megasphaera micronuciformis F0359] gi|310620461|gb|EFQ04031.1| ATP-dependent DNA helicase PcrA [Megasphaera micronuciformis F0359] Length = 738 Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 D +++ + E ++ ++ S V+A AGSGKT +L R+ RLL P +L +T T A Sbjct: 12 DTLNERQLEAVMHTEGPLS--VTAGAGSGKTKVLTCRIARLLEIGTDPYRILAITFTNKA 69 Query: 75 AAEMSHRVLEII 86 A EM RV ++ Sbjct: 70 AKEMRERVQNLV 81 >gi|256824633|ref|YP_003148593.1| ATP-dependent DNA helicase PcrA [Kytococcus sedentarius DSM 20547] gi|256688026|gb|ACV05828.1| ATP-dependent DNA helicase PcrA [Kytococcus sedentarius DSM 20547] Length = 831 Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL HP +L +T T AAAEM RV ++ Sbjct: 93 IIAGAGSGKTRVLTHRIAHLLRHRGVHPGQILAITFTNKAAAEMRERVEALVGP------ 146 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P ++ + V T H+ C I+++ + Sbjct: 147 --------------PARA------------------MWVSTFHSACVRILRREAKTVGLR 174 Query: 155 SHFAIADEEQSKKLI 169 S F+I D S++LI Sbjct: 175 STFSIYDAADSQRLI 189 >gi|207723734|ref|YP_002254132.1| dna helicase II (partial sequence) protein [Ralstonia solanacearum MolK2] gi|206588938|emb|CAQ35900.1| probable dna helicase II (partial sequence) protein [Ralstonia solanacearum MolK2] Length = 807 Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A + P SA + A AGSGKT +L R+ L+ ++ PS +L +T T Sbjct: 3 DLLAHLNPEQRAAVTLPDESALILAGAGSGKTRVLTTRIAWLVQSSRVSPSGVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM+ R+ Sbjct: 63 KAAKEMTARL 72 >gi|149189144|ref|ZP_01867432.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio shilonii AK1] gi|148837107|gb|EDL54056.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio shilonii AK1] Length = 1205 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 33/177 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-------HPST---LLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT + LRLLL + P T +L +T T+AA AE+ R+ Sbjct: 23 IEASAGTGKTFTIAGLYLRLLLGHGSDQSRHKQPLTVDQILVVTFTEAATAELRDRI--- 79 Query: 86 ITAWSHLSDEILSAEITKIQGK------KPNKSDMSKARHLLITILETPGGLK---VQTI 136 I A I +G KP +D++ R + T+L+ + V TI Sbjct: 80 -------RARIHQARIAFARGDSDDPVIKPLLNDITDHRFAVDTLLQAERQMDEAAVYTI 132 Query: 137 HAFCEAIMQQFPLEAN--ITSHFAIADEEQSK-KLIEEAKKSTLASIMLDNNEELKK 190 H FC+ ++ Q E+ + F I DE + K +++ + +S + L+ E++K Sbjct: 133 HGFCQRMLTQNAFESGSRFNNEF-ITDESRLKAQVVADFWRSQFYPLGLELASEVRK 188 >gi|325281708|ref|YP_004254250.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712] gi|324313517|gb|ADY34070.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712] Length = 756 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 30/53 (56%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + V A AGSGKT +L R+ +LL +L LT T AA EM R+ E++ Sbjct: 22 SLVIAGAGSGKTRVLTYRIAQLLSQGVPAYKILALTFTNKAAREMQKRIAELV 74 >gi|261868104|ref|YP_003256026.1| exodeoxyribonuclease V subunit beta [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413436|gb|ACX82807.1| exodeoxyribonuclease V, beta subunit [Aggregatibacter actinomycetemcomitans D11S-1] Length = 1221 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 15/143 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLA---NAHPSTL-----LCLTHTKAAAAEMSHRVLEII- 86 + A+AG+GKT+ + LRLLL NA P L L +T T+ A E+ ++ E I Sbjct: 17 IEASAGTGKTYTMGSLYLRLLLQAGENAFPHVLNVEQILVVTFTEMATEELKRKIRERIY 76 Query: 87 ------TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 TA+ D + + ++ + +D A L + + TIH FC Sbjct: 77 DAKQKLTAYQQTQDSAVFEQDEFLRQLADSITDFPLAIQRLTLAEQNMDLAAIYTIHGFC 136 Query: 141 EAIMQQFPLEANITSHFAIADEE 163 ++ Q+ + I + ++ EE Sbjct: 137 RRMLMQYAFNSGIHFNLELSGEE 159 >gi|261337676|ref|ZP_05965560.1| UvrD/REP helicase family protein [Bifidobacterium gallicum DSM 20093] gi|270277115|gb|EFA22969.1| UvrD/REP helicase family protein [Bifidobacterium gallicum DSM 20093] Length = 1406 Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 45/189 (23%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT+ + +R++ L+ P +L LT T+ AA+E+ RV T H D Sbjct: 24 VVAGAGSGKTYTMTERIIHLIDQGVPPQHILGLTFTRKAASELLQRVTSAYTKSLHADDT 83 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +A K + V T AF + I++++ L Sbjct: 84 SNAARFMKPE---------------------------VLTYDAFFQGIVRRYGL------ 110 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE-DIETLISDI--I 212 + +Q+ + + EA L S ++D N + ++LE S D T+++D+ + Sbjct: 111 ---LVGFDQNVQPLSEAGAHQLISDVVDANMQ------QVLEASKDYGSFSTMVNDVYAL 161 Query: 213 SNRTALKLI 221 SN A +I Sbjct: 162 SNNIASSMI 170 >gi|224372404|ref|YP_002606776.1| putative recombination protein RecB [Nautilia profundicola AmH] gi|223588940|gb|ACM92676.1| helicase [Nautilia profundicola AmH] Length = 878 Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 5/127 (3%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R L LL +PS++L +T T AA EM RV++ + L E Sbjct: 7 LKASAGSGKTFSLALRYLALLFRGVNPSSILAVTFTNKAANEMKERVIK----FLDLLKE 62 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 N+ ++ K R ++ T + + TI AF + ++++F + Sbjct: 63 DEELLEILCGTSGLNEKEILKKREFVLKEFLT-SDIHITTIDAFIQKVLRKFGYYVGVDV 121 Query: 156 HFAIADE 162 F I + Sbjct: 122 DFDIKSD 128 >gi|223040190|ref|ZP_03610469.1| acyl carrier protein [Campylobacter rectus RM3267] gi|222878551|gb|EEF13653.1| acyl carrier protein [Campylobacter rectus RM3267] Length = 677 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 17 ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S+ EQ A+ P V A+AG+GKT +V R+ LL P +L LT T AA Sbjct: 3 LSKLNQEQYAAATAPAGHNLVIASAGTGKTSTIVARIAHLLNLGVKPEKILLLTFTNKAA 62 Query: 76 AEMSHRV 82 AEM R+ Sbjct: 63 AEMIERL 69 >gi|114563702|ref|YP_751215.1| exodeoxyribonuclease V, beta subunit [Shewanella frigidimarina NCIMB 400] gi|114334995|gb|ABI72377.1| exodeoxyribonuclease V, beta subunit [Shewanella frigidimarina NCIMB 400] Length = 1276 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 8/139 (5%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87 S+ + A+AG+GKT+ + LRLLL + + L C +T T AA E+ R+ + I Sbjct: 19 SSLIEASAGTGKTYTISGLYLRLLLGHGGKAPLSCEQILVVTFTNAATEELRDRIRKRIN 78 Query: 88 -AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 A+ ++ E + + ++ + A L L++ + TIHAFC+ ++ Sbjct: 79 LAFKRFLGLAVNDEFIEQLYQDTSEDERPIALRRLDLALKSLDEAAIFTIHAFCQRVLSD 138 Query: 147 FPLEANI--TSHFAIADEE 163 E+++ S F + D E Sbjct: 139 MAFESSLLFESEFTLDDSE 157 >gi|296111905|ref|YP_003622287.1| ATP-dependent nuclease, subunit A [Leuconostoc kimchii IMSNU 11154] gi|295833437|gb|ADG41318.1| ATP-dependent nuclease, subunit A [Leuconostoc kimchii IMSNU 11154] Length = 1241 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 34/50 (68%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V+A+AGSGKT +L++R+++ +LA L +T T AAA EM R LEI Sbjct: 22 VAASAGSGKTTVLIERLIQKILAGTSVENFLIVTFTHAAANEMRER-LEI 70 >gi|330816643|ref|YP_004360348.1| Superfamily I DNA and RNA helicase [Burkholderia gladioli BSR3] gi|327369036|gb|AEA60392.1| Superfamily I DNA and RNA helicase [Burkholderia gladioli BSR3] Length = 789 Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A + P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGFASPPTVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMLSRL 72 >gi|296158133|ref|ZP_06840965.1| UvrD/REP helicase [Burkholderia sp. Ch1-1] gi|295891469|gb|EFG71255.1| UvrD/REP helicase [Burkholderia sp. Ch1-1] Length = 783 Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMSRL 72 >gi|269128418|ref|YP_003301788.1| ATP-dependent DNA helicase PcrA [Thermomonospora curvata DSM 43183] gi|268313376|gb|ACY99750.1| ATP-dependent DNA helicase PcrA [Thermomonospora curvata DSM 43183] Length = 768 Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL + HP+ +L +T T AA EM RV ++ S Sbjct: 31 IVAGAGSGKTRVLTHRIAYLLAERDVHPAQILAITFTNKAAGEMRERVQALVGPRS---- 86 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + V T H+ C I+++ Sbjct: 87 ----------------------------------GAMWVMTFHSACVRILRREARRLGFP 112 Query: 155 SHFAIADEEQSKKLI 169 S+F+I D +++L+ Sbjct: 113 SNFSIYDAADAQRLM 127 >gi|91784462|ref|YP_559668.1| ATP-dependent DNA helicase UvrD [Burkholderia xenovorans LB400] gi|91688416|gb|ABE31616.1| ATP-dependent DNA helicase UvrD [Burkholderia xenovorans LB400] Length = 783 Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMSRL 72 >gi|262202649|ref|YP_003273857.1| exodeoxyribonuclease V [Gordonia bronchialis DSM 43247] gi|262085996|gb|ACY21964.1| Exodeoxyribonuclease V [Gordonia bronchialis DSM 43247] Length = 1134 Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 14/156 (8%) Query: 26 LASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 +A D P ++ + A+AG+GKT+ +V R L S +L +T ++AA AE+ R+ E Sbjct: 13 IAEDLPAQTTVLEASAGTGKTYAIVSLAARYLAEGVPISGMLLVTFSRAATAELRERMRE 72 Query: 85 IITAWSHLSDEILSAEITKIQGKK----PNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 + + + SA + Q + D+++ R L+ L + T H FC Sbjct: 73 RVHGLVGVLADPASAAQSADQLHRLLAAGTAEDVARRRAHLVRALSDFDASTIATTHTFC 132 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 +++ + + E +++EE + T Sbjct: 133 NRMLEALGF---------LGEREMVYRIVEEVDELT 159 >gi|81300977|ref|YP_401185.1| ATP-dependent DNA helicase Rep [Synechococcus elongatus PCC 7942] gi|81169858|gb|ABB58198.1| ATP-dependent DNA helicase, Rep family [Synechococcus elongatus PCC 7942] Length = 794 Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 23/168 (13%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D +SQ + Q A + + V A AGSGKT L R+ LL + P +L +T T Sbjct: 4 DFLSQLNTSQRRAVEHYSGPLLVVAGAGSGKTRALTFRIAHLLRQHRVDPENILAVTFTN 63 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGG 130 AA EM R+ + + + ++ ++Q +P + ++ K + E Sbjct: 64 KAAKEMKERL-----------ERLFAQQLAELQYGQPFTTLREIEKTQLRSRVYREVTKD 112 Query: 131 LKVQTIHAFCEAIMQQFPLEA-------NITSHFAIADEEQSKKLIEE 171 L + T HA C I+ +F ++ T F+I DE + LI+E Sbjct: 113 LWIGTFHAICARIL-RFDIDKYCDPNGRRWTKQFSIFDENDVQGLIKE 159 >gi|87311977|ref|ZP_01094086.1| ATP-dependent DNA helicase [Blastopirellula marina DSM 3645] gi|87285281|gb|EAQ77206.1| ATP-dependent DNA helicase [Blastopirellula marina DSM 3645] Length = 701 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ R+ L+ PS +L +T T AAAEM R L ++ Sbjct: 58 VLAGAGSGKTRVVTFRIANLIKHGVRPSRILAVTFTNKAAAEMRERALGLL 108 >gi|225010263|ref|ZP_03700735.1| UvrD/REP helicase [Flavobacteria bacterium MS024-3C] gi|225005742|gb|EEG43692.1| UvrD/REP helicase [Flavobacteria bacterium MS024-3C] Length = 1043 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 8/130 (6%) Query: 37 SANAGSGKTHILVQRVLRLLLA-NAHPST--LLCLTHTKAAAAEMSHRVLEIITAWS--- 90 +A+AGSGKT+ L + L+L+LA NAH + +L LT T A EM R+L + +S Sbjct: 17 NASAGSGKTYTLTKVYLKLILAPNAHNNFGHILALTFTNKAVNEMKERILTGLADFSLTP 76 Query: 91 -HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 E L +++ K G + K+ +L+ +L +V TI F +++ F Sbjct: 77 CPKKSEALFSDVVKELGCS-REVLQKKSEKVLMQLLHNYAFFEVSTIDKFNHRLIRTFAK 135 Query: 150 EANITSHFAI 159 + + +F + Sbjct: 136 DLKLPQNFEV 145 >gi|188587404|ref|YP_001918949.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352091|gb|ACB86361.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 754 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 37/133 (27%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A AG+GKT LV RV LL + P +L LT T+ AA EM RV +++ S +D I Sbjct: 137 AGAGTGKTRTLVYRVSYLLESGIPPQEILLLTFTRKAAREMLERVKKLLGTES--TDRI- 193 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157 GG T H+F +++++ ++ F Sbjct: 194 ------------------------------KGG----TFHSFANNVLRRYSGLVGLSPDF 219 Query: 158 AIADEEQSKKLIE 170 ++ D+ S+ +++ Sbjct: 220 SVLDQIDSQDVVD 232 >gi|299069674|emb|CBJ40950.1| putative atp-dependent dna helicase II protein (uvrD) [Ralstonia solanacearum CMR15] Length = 710 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 9/87 (10%) Query: 9 EHSETIDLISQTKSEQLLA-----SDP----TRSAWVSANAGSGKTHILVQRVLRLLLAN 59 E + D ++Q +Q LA S P T V A AGSGKTH L RV L+ Sbjct: 9 ETAPAPDYLAQLNDQQRLAVEFGISGPDAAQTGPLLVLAGAGSGKTHTLGWRVAHLVANG 68 Query: 60 AHPSTLLCLTHTKAAAAEMSHRVLEII 86 A P +L LT ++ AA+E+S R ++ Sbjct: 69 ADPQRILLLTFSRRAASELSSRAGHLL 95 >gi|15835512|ref|NP_297271.1| ATP-dependent helicase PcrA [Chlamydia muridarum Nigg] gi|270285695|ref|ZP_06195089.1| ATP-dependent helicase PcrA [Chlamydia muridarum Nigg] gi|270289703|ref|ZP_06196005.1| ATP-dependent helicase PcrA [Chlamydia muridarum Weiss] gi|301337090|ref|ZP_07225292.1| ATP-dependent helicase PcrA [Chlamydia muridarum MopnTet14] gi|7190926|gb|AAF39692.1| ATP-dependent helicase PcrA [Chlamydia muridarum Nigg] Length = 634 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 72/171 (42%), Gaps = 42/171 (24%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L S+ + Q+ A + P + V A AG+GKT ++ R+L L+ A PS +L +T T Sbjct: 2 LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVSHRILYLIEEAQLDPSQILAITFTNK 61 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA E++ RVL Q P+ G V Sbjct: 62 AAKELNERVL--------------------TQCNFPDYR----------------GIPMV 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 T H+ I+++ + S+FAI D+ S+KLI K L + LDN Sbjct: 86 STFHSLGVYILRRSIQLLDRQSNFAIYDQSDSEKLI----KQCLRKLNLDN 132 >gi|50913958|ref|YP_059930.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10394] gi|81602230|sp|Q5XCW6|ADDA_STRP6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|50903032|gb|AAT86747.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10394] Length = 1222 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 19/151 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L +L L T T AA E+ R+ + L + Sbjct: 58 VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 I A+ T Q K L L++ + T+ AF + ++ ++ I+S Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISS 158 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 F I ++ + ++++ S L S ++ E Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 189 >gi|19745861|ref|NP_606997.1| putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes MGAS8232] gi|81632923|sp|Q8P1J2|ADDA_STRP8 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|19748011|gb|AAL97496.1| putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes MGAS8232] Length = 1222 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 19/151 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L +L L T T AA E+ R+ + L + Sbjct: 58 VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 I A+ T Q K L L++ + T+ AF + ++ ++ I+S Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISS 158 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 F I ++ + ++++ S L S ++ E Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 189 >gi|89070230|ref|ZP_01157554.1| helicase IV [Oceanicola granulosus HTCC2516] gi|89044150|gb|EAR50308.1| helicase IV [Oceanicola granulosus HTCC2516] Length = 919 Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 28/193 (14%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTH 70 +T++ + T ++L + V A AGSGKT ++ + L+ A PS LL L Sbjct: 133 DTVESMPLTPEQRLAVVIDEDATLVLAGAGSGKTSVITAKAAYLVKAGIREPSELLLLAF 192 Query: 71 TKAAAAEMSHR------VLEIITAWSHLSDEILSAEITKIQGKKP--------NKSDMSK 116 K AA EMS R V + L+ EI I +++G+KP +K+ +S Sbjct: 193 AKDAATEMSERFEAKCGVAVAARTFHALAYEI----IGEVEGEKPPLAPTATDDKAFLSL 248 Query: 117 ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI-TSHFAIADEEQSKKLIEEAKKS 175 + +L I+ T + QT+ + +FP E + T H A IE Sbjct: 249 VKEILRHIVATASEV-AQTVIGWFAGFFDEFPTEWDFKTKHHWYAQ-------IESRNLR 300 Query: 176 TLASIMLDNNEEL 188 TL ++ EEL Sbjct: 301 TLQGETVNGFEEL 313 >gi|282880688|ref|ZP_06289390.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1] gi|281305414|gb|EFA97472.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1] Length = 1076 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 4/146 (2%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA 88 P+ A+AGSGKT L +++++ N + +L +T T A EM R+L + Sbjct: 6 PSSLTISKASAGSGKTFKLATEYIKIVIDNPYAYRNILAVTFTNKATEEMKIRILSQLYG 65 Query: 89 WSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 +H LSD + K +K +A L +L +V+TI +F +++++ Sbjct: 66 IAHGLSDSESYLQEVKKALDLSDKQISERAEKALDLLLHNYSYFRVETIDSFFQSVLRNL 125 Query: 148 PLEANITSHFAIA--DEEQSKKLIEE 171 E ++T++ I D+E +K +++ Sbjct: 126 ARELDLTANLRIELNDKEIQEKAVDQ 151 >gi|260592504|ref|ZP_05857962.1| putative UvrD/REP helicase domain protein [Prevotella veroralis F0319] gi|260535550|gb|EEX18167.1| putative UvrD/REP helicase domain protein [Prevotella veroralis F0319] Length = 1098 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 2/124 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95 A+AGSGKT L + L++ N S +L +T T A EM R+L + +H L + Sbjct: 10 ASAGSGKTFTLASEYITLVVKNPQDYSRILAVTFTNKATQEMKMRILTQLYGIAHSLKES 69 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 E + + P + A L + +V TI AF +AI++ E N+T+ Sbjct: 70 QPYFEQVQTKTDLPEITIRENAAEALSLLTHHYNYFRVLTIDAFFQAILRNLARELNLTA 129 Query: 156 HFAI 159 + I Sbjct: 130 NLRI 133 >gi|240172870|ref|ZP_04751529.1| putative ATP dependent dna helicase [Mycobacterium kansasii ATCC 12478] Length = 768 Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 40/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ L+ A +L +T T AAAEM RV+ ++ A Sbjct: 36 IVAGAGSGKTAVLTRRIAYLIAARGVAVGQILAITFTNKAAAEMRERVVRLVGA------ 89 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 +AR++ ++ T H+ C I++ Q L + Sbjct: 90 ---------------------RARYMWVS-----------TFHSTCVRILRNQASLIEGL 117 Query: 154 TSHFAIADEEQSKKLIE 170 S+F+I D + S++L++ Sbjct: 118 NSNFSIYDADDSRRLLQ 134 >gi|148978468|ref|ZP_01814942.1| DNA-dependent helicase II [Vibrionales bacterium SWAT-3] gi|145962375|gb|EDK27655.1| DNA-dependent helicase II [Vibrionales bacterium SWAT-3] Length = 724 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 41/157 (26%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + + A AGSGKT +LV R+ L + A P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLQSVEQASPFSIMSVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ S G+ Sbjct: 66 KAAAEMRGRIEELMMGSSS--------------------------------------GMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T H C I++ L+A + F I D + +L+ Sbjct: 88 NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQIRLL 124 >gi|29346464|ref|NP_809967.1| ATP-dependent helicase [Bacteroides thetaiotaomicron VPI-5482] gi|29338360|gb|AAO76161.1| ATP-dependent helicase [Bacteroides thetaiotaomicron VPI-5482] Length = 1057 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + D+ Sbjct: 9 ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDKD 67 Query: 97 LSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A + +I + KK + A L +L +V+TI +F +++M+ E ++ Sbjct: 68 SEAYLNRIKEETKKTEQEIREAAGIALGYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127 Query: 155 SHFAI 159 + I Sbjct: 128 PNLNI 132 >gi|255322232|ref|ZP_05363378.1| acyl carrier protein [Campylobacter showae RM3277] gi|255300605|gb|EET79876.1| acyl carrier protein [Campylobacter showae RM3277] Length = 677 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 17 ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S+ EQ A+ P V A+AG+GKT +V R+ LL P +L LT T AA Sbjct: 3 LSKLNQEQYAAATAPAGHNLVIASAGTGKTSTIVARIAHLLNLGVKPEKILLLTFTNKAA 62 Query: 76 AEMSHRV 82 AEM R+ Sbjct: 63 AEMIERL 69 >gi|170782918|ref|YP_001711252.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp. sepedonicus] gi|169157488|emb|CAQ02679.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp. sepedonicus] Length = 815 Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 57/147 (38%), Gaps = 39/147 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ + A PS +L +T T AAAEM RV ++ S Sbjct: 55 VVAGAGSGKTRVLTHRIASLIESREAWPSQILAITFTNKAAAEMRERVESLLGQASE--- 111 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G+ + T H+ C I+++ T Sbjct: 112 -----------------------------------GMWISTFHSACVRILRREAEAFGFT 136 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIM 181 +F I D S+ LI+ K A + Sbjct: 137 QNFTIYDSADSRVLIKRIIKQLDADTL 163 >gi|157738288|ref|YP_001490972.1| ATP-dependent DNA helicase UvrD [Arcobacter butzleri RM4018] gi|157700142|gb|ABV68302.1| ATP-dependent DNA helicase, UvrD/PcrA family [Arcobacter butzleri RM4018] Length = 684 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 37/73 (50%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 LIS S+++ A + A AGSGKT + R+ L+ PS++L LT T AA Sbjct: 6 LISLNDSQKIAAQHVDGPLLILAGAGSGKTKTITTRLAFLISIGIDPSSILTLTFTNKAA 65 Query: 76 AEMSHRVLEIITA 88 EM R ++ + Sbjct: 66 TEMRERAFSLLDS 78 >gi|19703927|ref|NP_603489.1| ATP-dependent DNA helicase pcrA [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714099|gb|AAL94788.1| ATP-dependent DNA helicase pcrA [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 735 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 39/149 (26%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 S + A AGSGKT + R+ ++ P ++L +T T AA EM RV E++ Sbjct: 21 SILILAGAGSGKTRTITYRIAHMIENVGISPYSILAVTFTNKAAKEMRERVEELV----- 75 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 D++KA + T H+F +++ + E Sbjct: 76 --------------------GDVAKA-------------CTISTFHSFGMRLLRMYGKEV 102 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASI 180 S+F I D + K++++ K SI Sbjct: 103 GYNSNFTIYDTDDQKRIVKAILKGQNLSI 131 >gi|323490411|ref|ZP_08095623.1| ATP-dependent DNA helicase pcrA [Planococcus donghaensis MPA1U2] gi|323395910|gb|EGA88744.1| ATP-dependent DNA helicase pcrA [Planococcus donghaensis MPA1U2] Length = 737 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 +L++ EQ A T + A AGSGKT +L R+ L+L +PS +L +T T Sbjct: 7 NLLNGMNPEQAEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLVLEKQVYPSNILAITFTN 66 Query: 73 AAAAEMSHRV 82 AA EM +R+ Sbjct: 67 KAAREMRNRI 76 >gi|315636579|ref|ZP_07891813.1| UvrD/REP family ATP-dependent DNA helicase [Arcobacter butzleri JV22] gi|315479088|gb|EFU69787.1| UvrD/REP family ATP-dependent DNA helicase [Arcobacter butzleri JV22] Length = 684 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 37/73 (50%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 LIS S+++ A + A AGSGKT + R+ L+ PS++L LT T AA Sbjct: 6 LISLNDSQKIAAQHVDGPLLILAGAGSGKTKTITTRLAFLISIGIDPSSILTLTFTNKAA 65 Query: 76 AEMSHRVLEIITA 88 EM R ++ + Sbjct: 66 TEMRERAFSLLDS 78 >gi|329945395|ref|ZP_08293158.1| putative ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 170 str. F0386] gi|328529017|gb|EGF55948.1| putative ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 170 str. F0386] Length = 974 Score = 45.1 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 61/160 (38%), Gaps = 52/160 (32%) Query: 22 SEQLLASDPTRSAWVS---------ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 +E L +P + A V+ A AGSGKT +L R+ L+ A P +L +T T Sbjct: 118 AELLSGLNPAQEAAVTHVGAPLLIIAGAGSGKTRVLTHRIAHLIATGRARPGEILAITFT 177 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM RV T L P G Sbjct: 178 NKAAAEMRERV----------------------------------------TALVGPAGE 197 Query: 132 K--VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + V T H+ C I+++ A + S F+I D S +LI Sbjct: 198 RMWVSTFHSACVRILRREHEAAGLRSTFSIYDAADSTRLI 237 >gi|84393655|ref|ZP_00992406.1| DNA helicase II [Vibrio splendidus 12B01] gi|84375723|gb|EAP92619.1| DNA helicase II [Vibrio splendidus 12B01] Length = 724 Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 41/157 (26%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + + A AGSGKT +LV R+ L + A P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLQSVEQASPFSIMSVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ S G+ Sbjct: 66 KAAAEMRGRIEELMMGSSS--------------------------------------GMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T H C I++ L+A + F I D + +L+ Sbjct: 88 NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQIRLL 124 >gi|239905341|ref|YP_002952080.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1] gi|239795205|dbj|BAH74194.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1] Length = 739 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D ++ QL A T V A AGSGKT +V R+ L+L P+++L LT T+ Sbjct: 1 MDCTNELNPAQLEAVSTTEGPVLVIAGAGSGKTRTIVYRLAHLVLKGVEPASILLLTFTR 60 Query: 73 AAAAEMSHR 81 AA EM R Sbjct: 61 KAAQEMLTR 69 >gi|167748929|ref|ZP_02421056.1| hypothetical protein ANACAC_03710 [Anaerostipes caccae DSM 14662] gi|167651551|gb|EDR95680.1| hypothetical protein ANACAC_03710 [Anaerostipes caccae DSM 14662] Length = 618 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A GSGKT ++ +R L+ PS +L +T TKAAAAEM R L++ Sbjct: 21 VLAGPGSGKTTVITERTKYLIEHCGVKPSNILVITFTKAAAAEMKERFLKL 71 >gi|187924773|ref|YP_001896415.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN] gi|187715967|gb|ACD17191.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN] Length = 783 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMSRL 72 >gi|56751936|ref|YP_172637.1| ATP-dependent helicase PcrA [Synechococcus elongatus PCC 6301] gi|56686895|dbj|BAD80117.1| ATP-dependent helicase PcrA [Synechococcus elongatus PCC 6301] Length = 794 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 23/168 (13%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D +SQ + Q A + + V A AGSGKT L R+ LL + P +L +T T Sbjct: 4 DFLSQLNTSQRRAVEHYSGPLLVVAGAGSGKTRALTFRIAHLLRQHRVGPENILAVTFTN 63 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGG 130 AA EM R+ + + + ++ ++Q +P + ++ K + E Sbjct: 64 KAAKEMKERL-----------ERLFAQQLAELQYGQPFTTLREIEKTQLRSRVYREVTKD 112 Query: 131 LKVQTIHAFCEAIMQQFPLEA-------NITSHFAIADEEQSKKLIEE 171 L + T HA C I+ +F ++ T F+I DE + LI+E Sbjct: 113 LWIGTFHAICARIL-RFDIDKYCDPNGRRWTKQFSIFDENDVQGLIKE 159 >gi|221134097|ref|ZP_03560402.1| DNA helicase II [Glaciecola sp. HTCC2999] Length = 722 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 48/208 (23%), Positives = 80/208 (38%), Gaps = 44/208 (21%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMS 79 K Q +A+ P + + A AGSGKT +LV R+ L+ + N P ++L +T T AA EM Sbjct: 13 KQRQAVAA-PAQDMLILAGAGSGKTRVLVHRIAWLMEVENLSPFSILAVTFTNKAAREMR 71 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ ++ H H+ I T H Sbjct: 72 GRIEQLKGQSLH---------------------------HMWIG-----------TFHGL 93 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 +++ EAN+ +F I D + +LI K + S+ LD + K + + Sbjct: 94 AHRLLRAHYAEANLPENFTILDSDDQHRLI----KRIIKSMNLDEKDWPAKQSQWYINGN 149 Query: 200 NDEDIETLISDIISNRTALKLIFFFFSY 227 DE + D + K+ + +Y Sbjct: 150 KDEGLRPKDIDTYGDANQQKMRDIYQAY 177 >gi|94500333|ref|ZP_01306866.1| exodeoxyribonuclease V beta chain [Oceanobacter sp. RED65] gi|94427632|gb|EAT12609.1| exodeoxyribonuclease V beta chain [Oceanobacter sp. RED65] Length = 1184 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 33/136 (24%), Positives = 69/136 (50%), Gaps = 11/136 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA----HPSTLLCLTHTKAAAAEMSHRVL-EIITAWS 90 + A+AG+GKT + LRL+L + P +L +T TKAA E+ R+ + A++ Sbjct: 19 IEASAGTGKTFTIAALYLRLVLGHGCNPISPENILVVTFTKAATEELRGRIRNRLRQAYN 78 Query: 91 HL--SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + DE L + + + + S + + + + I++ + TIH F + ++ Q+ Sbjct: 79 AIQTQDESLDPFVFSLLKELDHTSALERLKD-AVQIMDIAA---IYTIHGFAQKVLSQYS 134 Query: 149 LEANITSHFAIADEEQ 164 +E+++ F + ++Q Sbjct: 135 VESHVDDEFELILDQQ 150 >gi|238027765|ref|YP_002911996.1| Superfamily I DNA and RNA helicase [Burkholderia glumae BGR1] gi|237876959|gb|ACR29292.1| Superfamily I DNA and RNA helicase [Burkholderia glumae BGR1] Length = 789 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 DL++ EQ A + P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGYASPPTVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMLSRL 72 >gi|225351772|ref|ZP_03742795.1| hypothetical protein BIFPSEUDO_03369 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158116|gb|EEG71399.1| hypothetical protein BIFPSEUDO_03369 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 1377 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 35/157 (22%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT+ + +R++ L+ P +L LT T+ AA+E+ RV Sbjct: 27 VVAGAGSGKTYTMTRRIITLIEQGVSPEKILGLTFTRKAASELLSRV------------- 73 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 SA +T+ Q ++ KS +T L+ +V T AF ++I++Q+ L Sbjct: 74 --SAAVTRDQRERGLKSAN-------MTFLKP----EVSTYDAFFQSIVRQYGL------ 114 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + +Q+ + + EA L +LD + + AF Sbjct: 115 ---LVGFDQNTQPLSEAGAMQLIHTVLDRHMDDLMAF 148 >gi|117619159|ref|YP_854747.1| DNA helicase II [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560566|gb|ABK37514.1| DNA helicase II [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 723 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 43/186 (23%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ L+ + P +++ +T T AAAEM RV ++I Sbjct: 21 PRCNLLVLAGAGSGKTRVLVHRIAWLMQVERCSPFSIIAVTFTNKAAAEMRGRVEKVI-- 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 D + G+ + T H +++ Sbjct: 79 ----GDGVR--------------------------------GMWIGTFHGIAHRLLRAHH 102 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208 L+A + F I D + +LI + L ++ LD +A + DE + Sbjct: 103 LDAGLPQDFQILDSDDQYRLI----RRVLKALNLDEKHWAPRAVMGYINGKKDEGLRPGD 158 Query: 209 SDIISN 214 D+ + Sbjct: 159 IDLYGD 164 >gi|319791429|ref|YP_004153069.1| uvrd/rep helicase [Variovorax paradoxus EPS] gi|315593892|gb|ADU34958.1| UvrD/REP helicase [Variovorax paradoxus EPS] Length = 704 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ ++ RL+ A P + +T T AAAEM R ++I Sbjct: 22 VLAGAGSGKTRVITHKIGRLIQAGLEPKRIAAITFTNKAAAEMRERAKDLI 72 >gi|209559149|ref|YP_002285621.1| Putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes NZ131] gi|251764566|sp|B5XKR4|ADDA_STRPZ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|209540350|gb|ACI60926.1| Putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes NZ131] Length = 1222 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 19/151 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L +L L T T AA E+ R+ + L + Sbjct: 58 VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 I A+ T Q K L L++ + T+ AF + ++ ++ I+S Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISS 158 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 F I ++ + ++++ S L S ++ E Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFSEFMNQKE 189 >gi|119964268|ref|YP_946829.1| ATP-dependent DNA helicase PcrA [Arthrobacter aurescens TC1] gi|119951127|gb|ABM10038.1| ATP-dependent DNA helicase PcrA [Arthrobacter aurescens TC1] Length = 848 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 39/141 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ L+ AH +L +T T AAAEM R+ ++ A Sbjct: 93 IVAGAGSGKTRVLSNRIAYLIATKRAHHGEILAITFTNKAAAEMRERIEALVGA------ 146 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +A+ G+ + T H+ C I+++ + Sbjct: 147 ---------------------RAK-----------GMWISTFHSSCVRILRREAANVGLN 174 Query: 155 SHFAIADEEQSKKLIEEAKKS 175 S+F+I D S +LI K+ Sbjct: 175 SNFSIYDSADSLRLITLVAKN 195 >gi|86148257|ref|ZP_01066553.1| DNA helicase II [Vibrio sp. MED222] gi|218710970|ref|YP_002418591.1| DNA-dependent helicase II [Vibrio splendidus LGP32] gi|85833953|gb|EAQ52115.1| DNA helicase II [Vibrio sp. MED222] gi|218323989|emb|CAV20351.1| DNA helicase II [Vibrio splendidus LGP32] Length = 724 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 41/157 (26%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + + A AGSGKT +LV R+ L + A P +++ +T T Sbjct: 8 LDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLQSVEQASPFSIMSVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ S G+ Sbjct: 66 KAAAEMRGRIEELMMGSSS--------------------------------------GMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T H C I++ L+A + F I D + +L+ Sbjct: 88 NGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQIRLL 124 >gi|313900250|ref|ZP_07833746.1| putative ATP-dependent nuclease subunit A [Clostridium sp. HGF2] gi|312954959|gb|EFR36631.1| putative ATP-dependent nuclease subunit A [Clostridium sp. HGF2] Length = 1069 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 22/114 (19%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 VSA+AGSGKT +L+ R++ L++ + H S ++L +T T+AAA EM R Sbjct: 21 VSASAGSGKTTVLIARLMDLVMKD-HVSIDSILAMTFTEAAANEMKKR------------ 67 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 L+ E+ K + + S L I + TIH+FC +I+Q++ Sbjct: 68 ---LATELQKALTAARTEEEKSYITRQLTGIQTA----HISTIHSFCLSIIQEY 114 >gi|154509554|ref|ZP_02045196.1| hypothetical protein ACTODO_02086 [Actinomyces odontolyticus ATCC 17982] gi|153799188|gb|EDN81608.1| hypothetical protein ACTODO_02086 [Actinomyces odontolyticus ATCC 17982] Length = 1142 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 30/159 (18%) Query: 14 IDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTH 70 +D EQ+ + P R V A AGSGKT + RVL LL + PS++L LT Sbjct: 12 VDATKTPTHEQVRVIEAPRRPLLVVAGAGSGKTETMSMRVLWLLANHPDLSPSSILGLTF 71 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T+ AA E+ R+ E I +LS E+ +++ + + E P Sbjct: 72 TRKAAGELGERLRERI--------RLLSREMPQLRER----------------LDEDPVS 107 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 L T ++F E I+ + + I F++ E + L+ Sbjct: 108 L---TYNSFAERIVSEHGMRIGIDPDFSMLSEAGALDLM 143 >gi|94994076|ref|YP_602174.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10750] gi|251764562|sp|Q1J7E4|ADDA_STRPF RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|94547584|gb|ABF37630.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10750] Length = 1222 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 19/151 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L +L L T T AA E+ R+ + L + Sbjct: 58 VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 I A+ T Q K L L++ + T+ AF + ++ ++ I+S Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISS 158 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 F I ++ + ++++ S L S ++ E Sbjct: 159 QFRIMQDKAEQGVLKQEVFSKLFSEFMNQKE 189 >gi|332184148|gb|AEE26402.1| ATP-dependent DNA helicase UvrD/PcrA/Rep family, Francisella type [Francisella cf. novicida 3523] Length = 688 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 39/64 (60%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 ++++ D T+ A VSA AGSGKT L+ R+ L+ P+ +L L + K+A + + R+ Sbjct: 8 QKIINHDITKHALVSAVAGSGKTQTLIARIEYLVSNQVAPNRILVLMYNKSAQLDFATRL 67 Query: 83 LEII 86 +++ Sbjct: 68 KKVL 71 >gi|295132152|ref|YP_003582828.1| UvrD/REP family helicase [Zunongwangia profunda SM-A87] gi|294980167|gb|ADF50632.1| UvrD/REP family helicase [Zunongwangia profunda SM-A87] Length = 1040 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 8/142 (5%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +A+AGSGKT LV+ L LL + T +L +T T A EM R++E + A++ Sbjct: 9 NASAGSGKTFTLVKSYLSLLFKSGKTDTYKNILAITFTNKAVHEMKTRIVESLYAFTKKP 68 Query: 94 DEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 S + + K+ S K+ +L I+ +V TI F +++ F + Sbjct: 69 VPESSKALLEAVAKETAHSKEEIQEKSVAILKNIIHNYAAFEVSTIDGFTHRVLRTFAKD 128 Query: 151 ANITSHFAIADEEQSKKLIEEA 172 + +F + E + K++ EA Sbjct: 129 LGLPVNFEV--ELDTDKILNEA 148 >gi|297588277|ref|ZP_06946920.1| UvrD/REP helicase subfamily [Finegoldia magna ATCC 53516] gi|297573650|gb|EFH92371.1| UvrD/REP helicase subfamily [Finegoldia magna ATCC 53516] Length = 967 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 82/192 (42%), Gaps = 41/192 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +I + +++L S ++ V+A AG+GKT ++ +R + +++C+T T AA Sbjct: 1 MIKFSDNQKLAYSTIDKNVCVNAGAGTGKTEVVSERFRYMYENGIDIKSIVCITFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+++ + L D+I V T Sbjct: 61 DEMKDRIIQKLNN-PRLVDDI-----------------------------------NVST 84 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC+ I+ +I F I +++Q+ K+I E + +L+N + K + Sbjct: 85 ISSFCKKIVSDNSYYLSIDPSFQIIEDDQANKMINE-----IFDKILENRIDFIKKLGNV 139 Query: 196 LEISNDEDIETL 207 L+IS + ++ + Sbjct: 140 LDISYTDTLKII 151 >gi|160914774|ref|ZP_02076988.1| hypothetical protein EUBDOL_00781 [Eubacterium dolichum DSM 3991] gi|158433314|gb|EDP11603.1| hypothetical protein EUBDOL_00781 [Eubacterium dolichum DSM 3991] Length = 1080 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 22/114 (19%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLC-LTHTKAAAAEMSHRVL-EIITAWSHLS 93 VSA+AGSGKT +L+ R++ L++ + +C +T T+AAA EM R+ E+ A++ Sbjct: 32 VSASAGSGKTTVLIARLMDLVMKDHISIDEICAMTFTEAAANEMKKRLASELQKAYAAAQ 91 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 A ITK +T L+T + TIH+FC +I+Q++ Sbjct: 92 SMEEKAFITK-----------------QLTNLQTA---HISTIHSFCLSIIQKY 125 >gi|325266832|ref|ZP_08133503.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Kingella denitrificans ATCC 33394] gi|324981573|gb|EGC17214.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Kingella denitrificans ATCC 33394] Length = 782 Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 2/79 (2%) Query: 6 SFQEHSETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63 SF E + L++ EQL A + P +S V A AGSGKT +L R+ LL A + Sbjct: 46 SFSEQNPHFSLLNHLNPEQLSAVTYPAQSVLVLAGAGSGKTRVLTTRIAWLLQNGMAGVN 105 Query: 64 TLLCLTHTKAAAAEMSHRV 82 +L +T T AA EM R+ Sbjct: 106 NILAVTFTNKAAKEMQTRL 124 >gi|229004068|ref|ZP_04161870.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides Rock1-4] gi|228757166|gb|EEM06409.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides Rock1-4] Length = 687 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + N HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLINVKNVHPRNILLLTFTQKAAEEIRSRV 115 >gi|46445668|ref|YP_007033.1| ATP-dependent DNA helicase [Candidatus Protochlamydia amoebophila UWE25] gi|46399309|emb|CAF22758.1| probable ATP-dependent DNA helicase [Candidatus Protochlamydia amoebophila UWE25] Length = 761 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT ++ R++ L+ PS +L +T T AA EM RV ++ Sbjct: 60 VLAGAGSGKTRVVTSRIVNLIENGISPSNILGVTFTNKAAQEMRERVCKL 109 >gi|292493733|ref|YP_003529172.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4] gi|291582328|gb|ADE16785.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4] Length = 715 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 43/165 (26%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78 K+++ + P V A AGSGKT +LV R+ L+ + P +LL +T T AA EM Sbjct: 11 NKAQREAVAAPAGHHLVLAGAGSGKTRVLVHRIAWLIRSQGISPFSLLAVTFTNKAAGEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ E++ GG+ + T H Sbjct: 71 RGRIEELLGM--------------------------------------PAGGMWMGTFHG 92 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 +++ EA + F I D E +LI + L ++ LD Sbjct: 93 LAHRLLRTHWQEAQLPQDFQILDSEDQYRLI----RRILQNLNLD 133 >gi|222100309|ref|YP_002534877.1| ATP-dependent DNA helicase [Thermotoga neapolitana DSM 4359] gi|221572699|gb|ACM23511.1| ATP-dependent DNA helicase [Thermotoga neapolitana DSM 4359] Length = 649 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 38/142 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A GSGKT ++ ++ LL PS +L +T T+AAA EM R +++T LS E Sbjct: 37 VIAGPGSGKTRVITYKIAYLLANGVDPSRILLVTFTRAAAREMVERA-KMVTG-RELS-E 93 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +L+ T H C ++++ + Sbjct: 94 MLAG-----------------------------------TFHHVCNYFLRKYAPYVGLDR 118 Query: 156 HFAIADEEQSKKLIEEAKKSTL 177 +++I D E S+ L+ A+ L Sbjct: 119 NYSILDREDSESLMRHARSKFL 140 >gi|163748667|ref|ZP_02155920.1| DNA helicase II [Shewanella benthica KT99] gi|161331777|gb|EDQ02581.1| DNA helicase II [Shewanella benthica KT99] Length = 721 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 63/158 (39%), Gaps = 43/158 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P S V A AGSGKT +L R+ L+ + P ++L +T T AAAEM RV Sbjct: 21 PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVTFTNKAAAEMRERV------ 74 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +K + S+M G + + T H +++ Sbjct: 75 ------------------EKVSGSNM--------------GRMWIGTFHGLAHRLLRTHY 102 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 +AN+ F I D + +LI K L S+ LD + Sbjct: 103 KDANLPQTFQIIDSDDQLRLI----KRILKSLHLDEKQ 136 >gi|296532805|ref|ZP_06895482.1| excision endonuclease subunit UvrD [Roseomonas cervicalis ATCC 49957] gi|296266866|gb|EFH12814.1| excision endonuclease subunit UvrD [Roseomonas cervicalis ATCC 49957] Length = 745 Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 39/142 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AG+GKT +L R +L+ A P+ +L +T T AA EM RV I+ H ++ Sbjct: 38 VLAGAGTGKTRVLTTRFAHILMTRRAFPNQVLAVTFTNKAAREMRERVSAIL---GHPAE 94 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 GL + T HA C ++++ +T Sbjct: 95 -----------------------------------GLWLGTFHALCARMLRRHAELVGLT 119 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 S+F+I D + +L+++ +++ Sbjct: 120 SNFSILDTDDQMRLLKQVMEAS 141 >gi|320353670|ref|YP_004195009.1| UvrD/REP helicase [Desulfobulbus propionicus DSM 2032] gi|320122172|gb|ADW17718.1| UvrD/REP helicase [Desulfobulbus propionicus DSM 2032] Length = 731 Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 30/50 (60%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT LV R+ L+ P ++L LT T+ AA EM HR E+ Sbjct: 42 VIAGAGSGKTRTLVYRMAYLIEQGVEPESILLLTFTRRAAQEMLHRAGEL 91 >gi|113868708|ref|YP_727197.1| superfamily I DNA/RNA helicase [Ralstonia eutropha H16] gi|113527484|emb|CAJ93829.1| Superfamily I DNA and RNA helicase [Ralstonia eutropha H16] Length = 782 Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 DL++ +EQL A + P A + A AGSGKT +L R+ L+ P+ +L +T T Sbjct: 3 DLLANLNAEQLAAVTLPDEPALILAGAGSGKTRVLTTRIAWLIQNGRVSPAGILAVTFTN 62 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ ++ Sbjct: 63 KAAKEMQTRLSSML 76 >gi|325972063|ref|YP_004248254.1| UvrD/REP helicase [Spirochaeta sp. Buddy] gi|324027301|gb|ADY14060.1| UvrD/REP helicase [Spirochaeta sp. Buddy] Length = 1104 Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 27/129 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA AGSGKT +L R LRL+L A +L LT T+ AA EM R+ HL Sbjct: 31 VSAGAGSGKTTVLSYRFLRLVLEGKAQVGEILTLTFTRKAAREMQERIHR------HL-- 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + +I G+ S+ S + T+ +FC I++ + I Sbjct: 83 -LCCKNDERIVGQLATFSEAS-----------------ISTLDSFCSQIVRSDSIRYGIA 124 Query: 155 SHFAIADEE 163 F I DE+ Sbjct: 125 QDFVIDDEQ 133 >gi|114322010|ref|YP_743693.1| ATP-dependent DNA helicase UvrD [Alkalilimnicola ehrlichii MLHE-1] gi|114228404|gb|ABI58203.1| ATP-dependent DNA helicase UvrD [Alkalilimnicola ehrlichii MLHE-1] Length = 725 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L +R L+ + A P ++ +T T AAAEM HR+ E++ Sbjct: 31 VLAGAGSGKTRVLTRRAAWLVRVEGASPFGIMAVTFTNKAAAEMRHRIGELL 82 >gi|146300673|ref|YP_001195264.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101] gi|146155091|gb|ABQ05945.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101] Length = 778 Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 ID +++ + + +L D + A AGSGKT +L R+ L+ +L LT T Sbjct: 5 IDQLNEAQRQPVLKKDG--PMIIIAGAGSGKTRVLTIRIAYLMAQGVDAFNILSLTFTNK 62 Query: 74 AAAEMSHRVLEIITA 88 AA EM HR+ +I+ A Sbjct: 63 AAREMKHRIADIVGA 77 >gi|261367235|ref|ZP_05980118.1| ATP-dependent deoxyribonuclease subunit A [Subdoligranulum variabile DSM 15176] gi|282570836|gb|EFB76371.1| ATP-dependent deoxyribonuclease subunit A [Subdoligranulum variabile DSM 15176] Length = 1160 Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 25/142 (17%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAW 89 S VSA AGSGKT +LV+RV+ ++ HP +LL +T T AAAA++ + Sbjct: 23 SLLVSAAAGSGKTRVLVERVVGMITDPQHPVEADSLLIMTFTNAAAAKLRADIA------ 76 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + L+DE+ + + ++ R L+ + G T+ AFC +QQ Sbjct: 77 TRLADEV-----------RAHPGNVRLRRQQLLLQRASIG-----TVDAFCLHFVQQHFA 120 Query: 150 EANITSHFAIADEEQSKKLIEE 171 ++ F A+E ++ +E Sbjct: 121 ALDVPPDFETAEEADLARIEQE 142 >gi|325269864|ref|ZP_08136474.1| helicase [Prevotella multiformis DSM 16608] gi|324987837|gb|EGC19810.1| helicase [Prevotella multiformis DSM 16608] Length = 1099 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH-LSD- 94 A+AGSGKT L + L++ N +L +T T A EM R+L + +H LSD Sbjct: 10 ASAGSGKTFTLASEYIALVVKNPQDYKKILAVTFTNKATQEMKIRILSQLYGIAHGLSDS 69 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + ++ K G P + A L + +VQTI AF +++++ E N+T Sbjct: 70 QAYFDQVVKKTGF-PETTIREHAAEALSLLTHHYNEFRVQTIDAFFQSVLRNLAHELNLT 128 Query: 155 SHFAI 159 ++ I Sbjct: 129 ANLRI 133 >gi|317495222|ref|ZP_07953592.1| ATP-dependent DNA helicase PcrA [Gemella moribillum M424] gi|316914644|gb|EFV36120.1| ATP-dependent DNA helicase PcrA [Gemella moribillum M424] Length = 728 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 14 IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71 ++L+ QL A T+ A V A AGSGKT +L R+ L+ N S +L +T T Sbjct: 1 MELVQNMNENQLKAILKTQGAVMVIAGAGSGKTRVLTNRIAYLIAEKNVLESNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWS 90 AA EM R+ ++ S Sbjct: 61 NKAAKEMKERIYSLVGETS 79 >gi|228996423|ref|ZP_04156064.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides Rock3-17] gi|228763306|gb|EEM12212.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides Rock3-17] Length = 687 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + N HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLINVKNVHPRNILLLTFTQKAAEEIRSRV 115 >gi|325676354|ref|ZP_08156033.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707] gi|325552915|gb|EGD22598.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707] Length = 824 Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 40/141 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ LL P +L +T T AAAEM RV +++ Sbjct: 51 IVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFTNKAAAEMRERVAQLV-------- 102 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 G + N + V T H+ C I++ Q L + Sbjct: 103 -----------GPRANS-------------------MWVSTFHSSCVRILRAQAGLLHGL 132 Query: 154 TSHFAIADEEQSKKLIEEAKK 174 S+F+I D + S++L+ K Sbjct: 133 NSNFSIYDADDSRRLLTMISK 153 >gi|293189192|ref|ZP_06607916.1| UvrD/REP helicase family protein [Actinomyces odontolyticus F0309] gi|292821864|gb|EFF80799.1| UvrD/REP helicase family protein [Actinomyces odontolyticus F0309] Length = 1142 Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 30/159 (18%) Query: 14 IDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTH 70 +D EQ+ + P R V A AGSGKT + RVL LL + PS++L LT Sbjct: 12 VDATKTPTPEQVRVIEAPRRPLLVVAGAGSGKTETMSMRVLWLLANHPDLSPSSILGLTF 71 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T+ AA E+ R+ E I +LS E+ +++ + + E P Sbjct: 72 TRKAAGELGERLRERI--------RLLSREMPQLRER----------------LDEDPVS 107 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 L T ++F E I+ + + I F++ E + L+ Sbjct: 108 L---TYNSFAERIVSEHGMRIGIDPDFSMLSEAGALDLM 143 >gi|226323304|ref|ZP_03798822.1| hypothetical protein COPCOM_01076 [Coprococcus comes ATCC 27758] gi|225208494|gb|EEG90848.1| hypothetical protein COPCOM_01076 [Coprococcus comes ATCC 27758] Length = 347 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 39/138 (28%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT +L R+ L+ +P +L +T T AA EM RV +I+ S Sbjct: 26 AGAGSGKTRVLTHRIAWLIDQIGVNPWNILAITFTNKAAGEMRERVDQIVGFGSE----- 80 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 + V T H+ C I++++ ++ Sbjct: 81 ---------------------------------SIWVSTFHSMCVRILRRYIDRLGYDTN 107 Query: 157 FAIADEEQSKKLIEEAKK 174 F I D + K LI++ K Sbjct: 108 FTIYDADDQKTLIKDVCK 125 >gi|327399219|ref|YP_004340088.1| UvrD/REP helicase [Hippea maritima DSM 10411] gi|327181848|gb|AEA34029.1| UvrD/REP helicase [Hippea maritima DSM 10411] Length = 667 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 10/114 (8%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD-- 94 A AGSGKT L ++ +L A P +L LT T AA EM R+ ++I S SD Sbjct: 30 AGAGSGKTKTLTHKIAFILNEGLAKPYQILALTFTNKAAGEMKERIGKLI--GSQASDMW 87 Query: 95 ----EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAI 143 ++ +I + +G +P D +L+ IL+ K T AFC +I Sbjct: 88 IGTFHSIALKILRKEGFRPTIYDSKDQENLIKEILKKLNIDSKKYTPRAFCSSI 141 >gi|320546489|ref|ZP_08040804.1| exonuclease RexA [Streptococcus equinus ATCC 9812] gi|320448874|gb|EFW89602.1| exonuclease RexA [Streptococcus equinus ATCC 9812] Length = 1208 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 28/156 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R++ +L L T T AA E+ R Sbjct: 45 VSASAGSGKTFVMVERIIDKILRGVTVDQLFISTFTVKAAGELKER-------------- 90 Query: 96 ILSAEITKI-QGKKPNKSDMSKARHLLITILETPGGLK---VQTIHAFCEAIMQQFPLEA 151 L +I+K+ Q K N + LL GL+ + T+ AF + ++ Q+ Sbjct: 91 -LEKKISKVLQVTKDNDTKTYLNEQLL--------GLQTADIGTMDAFTQKLVNQYGYTL 141 Query: 152 NITSHFAIADEEQSKKLIE-EAKKSTLASIMLDNNE 186 I+ F I ++ + L++ E + ML N+ Sbjct: 142 GISPTFRIMTDKSEQDLVKNEVFADLFSDYMLGENQ 177 >gi|226365048|ref|YP_002782831.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus opacus B4] gi|226243538|dbj|BAH53886.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus opacus B4] Length = 827 Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 50/169 (29%) Query: 18 SQTKSEQLLA--SDPTRSAWVSAN--------AGSGKTHILVQRVLRLLLANA-HPSTLL 66 ++T S+ LL + P R A V A AGSGKT +L +R+ LL P +L Sbjct: 23 ARTGSDALLQGLNPPQREAVVHAGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMPGQIL 82 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AAAEM RV ++ G + N Sbjct: 83 AITFTNKAAAEMRERVAHLV-------------------GPRANS--------------- 108 Query: 127 TPGGLKVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKK 174 + V T H+ C I++ Q L + S+F+I D + S++L+ K Sbjct: 109 ----MWVSTFHSSCVRILRAQAALLPGLNSNFSIYDADDSRRLLTMISK 153 >gi|94499918|ref|ZP_01306454.1| DNA helicase II [Oceanobacter sp. RED65] gi|94428119|gb|EAT13093.1| DNA helicase II [Oceanobacter sp. RED65] Length = 736 Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 41/161 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 +E +D ++ + E + + P V A AGSGKT +LV R+ L+ + + PS+++ +T Sbjct: 7 TELLDGLNPPQREAV--ASPLNHQLVLAGAGSGKTRVLVHRIAWLMQIEHISPSSIMAVT 64 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV E+T I +P Sbjct: 65 FTNKAAKEMRSRV----------------EELTGI----------------------SPK 86 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 L + T H+ +++ +AN++ +F + D + +LI+ Sbjct: 87 HLWIGTFHSLAHRLLRTHWKQANLSENFQVMDSDDQLRLIK 127 >gi|330446369|ref|ZP_08310021.1| uvrD/REP helicase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490560|dbj|GAA04518.1| uvrD/REP helicase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 693 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 3/78 (3%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AG+GKT +LV R L+ + A P +L L + AA EMS R+ E ++ ++ Sbjct: 214 VLAGAGTGKTSVLVARAGYLIASQQAVPEDILMLAFGRKAAEEMSERMREKVSDRVKVAT 273 Query: 95 --EILSAEITKIQGKKPN 110 + S IT+++G+KPN Sbjct: 274 FHSLGSQIITEVEGEKPN 291 >gi|220918612|ref|YP_002493916.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956466|gb|ACL66850.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1] Length = 671 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++ RV LL+ P +L +T T AA EM RV Sbjct: 24 VLAGAGSGKTRVIAHRVAYLLVQGVDPEQVLAVTFTNKAAGEMRERV 70 >gi|302325472|gb|ADL24673.1| UvrD/REP helicase domain protein/acyltransferase domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 744 Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 31/50 (62%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 + A AGSGKT +L +R+ +++ P +L LT T AAAEM RV ++ Sbjct: 30 ILAGAGSGKTSVLTKRIQYRIMSGVEPEKILALTFTAKAAAEMRERVQKL 79 >gi|209973035|ref|YP_002300482.1| putative UvrD-type helicase [Bacillus phage SPO1] Length = 703 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 33/53 (62%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 ++A AGSGKT +L R+ +L +LC T+TK A EM+ R+ ++I++ Sbjct: 49 INAVAGSGKTRVLTSRIAYMLSTGIKARHILCTTYTKKATQEMTERLSKLISS 101 >gi|197123847|ref|YP_002135798.1| UvrD/REP helicase [Anaeromyxobacter sp. K] gi|196173696|gb|ACG74669.1| UvrD/REP helicase [Anaeromyxobacter sp. K] Length = 671 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++ RV LL+ P +L +T T AA EM RV Sbjct: 24 VLAGAGSGKTRVIAHRVAYLLVQGVDPEQVLAVTFTNKAAGEMRERV 70 >gi|110835551|ref|YP_694410.1| DNA helicase II [Alcanivorax borkumensis SK2] gi|110648662|emb|CAL18138.1| DNA helicase II [Alcanivorax borkumensis SK2] Length = 720 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 50/215 (23%), Positives = 82/215 (38%), Gaps = 45/215 (20%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTK 72 ID ++ + + + A D + V A AGSGKT +LV R+ ++ A P +L +T T Sbjct: 8 IDGLNPAQRDAVAADD--QHLLVLAGAGSGKTRVLVHRIAWQIATEQASPFGILAVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ +++ DMS G+ Sbjct: 66 KAAAEMRGRIEQLL--------------------------DMSAD------------GMW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T H +++ EA + F I D + +LI+ K + LD + Sbjct: 88 VGTFHGIAHRLLRAHWQEAGLPQGFQIIDADDQIRLIKRVSK----ELGLDEQRWPARQA 143 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 + DE + D + AL + +F+Y Sbjct: 144 TWFINSQKDEGLRARHMDTGGDLFALTMQKIYFAY 178 >gi|86159793|ref|YP_466578.1| ATP-dependent DNA helicase Rep [Anaeromyxobacter dehalogenans 2CP-C] gi|85776304|gb|ABC83141.1| ATP-dependent DNA helicase, Rep family [Anaeromyxobacter dehalogenans 2CP-C] Length = 671 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++ RV LL+ P +L +T T AA EM RV Sbjct: 24 VLAGAGSGKTRVIAHRVAYLLVQGVDPEQVLAVTFTNKAAGEMRERV 70 >gi|254448468|ref|ZP_05061928.1| DNA-dependent ATPase I and helicase II [gamma proteobacterium HTCC5015] gi|198261851|gb|EDY86136.1| DNA-dependent ATPase I and helicase II [gamma proteobacterium HTCC5015] Length = 725 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 43/167 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + P L+ +T Sbjct: 4 SYLLDGLNDAQREAVCA--PPANLLVLAGAGSGKTRVLVHRMAWLIEVEKVSPYGLMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP- 128 T AAAEM R +L P Sbjct: 62 FTNKAAAEMRQRCE---------------------------------------ALLGMPT 82 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 GG+ V T H +++Q EA + F I D + +L++ +S Sbjct: 83 GGMWVGTFHGISHRLLRQHWQEAGLPEGFQILDSQDQLRLVKRVVRS 129 >gi|17546954|ref|NP_520356.1| DNA helicase II protein [Ralstonia solanacearum GMI1000] gi|17429255|emb|CAD15942.1| probable dna helicase II protein [Ralstonia solanacearum GMI1000] Length = 829 Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 +L++ EQ A + P SA + A AGSGKT +L R+ L+ A PS +L +T T Sbjct: 38 ELLAHLNPEQRAAVTLPDESALILAGAGSGKTRVLTTRIAWLIQSARVSPSGVLAVTFTN 97 Query: 73 AAAAEMSHRV 82 AA EM+ R+ Sbjct: 98 KAAKEMTARL 107 >gi|320102499|ref|YP_004178090.1| Exodeoxyribonuclease V [Isosphaera pallida ATCC 43644] gi|319749781|gb|ADV61541.1| Exodeoxyribonuclease V [Isosphaera pallida ATCC 43644] Length = 1214 Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 31/192 (16%) Query: 36 VSANAGSGKTHILVQRVL-----RLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89 +S+ AG GKT +L +R++ RLL + H ++ +T T AAA E+ +R+ AW Sbjct: 31 LSSGAGCGKTTVLSERLIAEYRERLLHTDFHDLRRVVAVTFTDAAARELLNRIRH--CAW 88 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + K N +++L + P G T H+FC ++++ L Sbjct: 89 KSVD-------------SKTNDRLACVWKNMLRGLDAAPIG----TFHSFCGRLIRRHAL 131 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-EDIETLI 208 I F IA+E + L A L ++ +N+++L +I + + ++ Sbjct: 132 ALGIDPAFTIANETLTPTLKSRAVVRCLRHLLTNNDDDL-----QIFAVEEGLPAVRAML 186 Query: 209 SDIISNRTALKL 220 +I+ +R A+ L Sbjct: 187 EEILDDRDAVDL 198 >gi|312138580|ref|YP_004005916.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi 103S] gi|311887919|emb|CBH47231.1| UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus equi 103S] Length = 824 Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 40/141 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ LL P +L +T T AAAEM RV +++ Sbjct: 51 IVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFTNKAAAEMRERVAQLV-------- 102 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 G + N + V T H+ C I++ Q L + Sbjct: 103 -----------GPRANS-------------------MWVSTFHSSCVRILRAQAGLLHGL 132 Query: 154 TSHFAIADEEQSKKLIEEAKK 174 S+F+I D + S++L+ K Sbjct: 133 NSNFSIYDADDSRRLLTMISK 153 >gi|270284798|ref|ZP_06194192.1| exodeoxyribonuclease V, beta chain, putative [Chlamydia muridarum Nigg] gi|270288828|ref|ZP_06195130.1| exodeoxyribonuclease V, beta chain, putative [Chlamydia muridarum Weiss] gi|301336178|ref|ZP_07224380.1| exodeoxyribonuclease V beta chain [Chlamydia muridarum MopnTet14] Length = 1026 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 12/129 (9%) Query: 30 PTRSA----WVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVL 83 PT S ++ A+AG+GKT + Q +LR LL T +L +T T AA E+ R+ Sbjct: 9 PTTSVSGKFFLEASAGTGKTFTIEQVILRSLLEGNVEQTKNILVVTFTNAATNELKLRIQ 68 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI---LETPGGLKVQTIHAFC 140 E + L + LS T + S +K + L I I L T + + TIH FC Sbjct: 69 ESLKQALTLFSQALSHPETPLPPYV--SSQETKVKQLYIKIRNSLATLDEMNIFTIHGFC 126 Query: 141 EAIMQQ-FP 148 ++Q FP Sbjct: 127 RFTLEQHFP 135 >gi|168216776|ref|ZP_02642401.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens NCTC 8239] gi|182381218|gb|EDT78697.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens NCTC 8239] Length = 751 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL S EQ A+ + A AGSGKT +L R+ ++ + P +L +T T Sbjct: 1 MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60 Query: 73 AAAAEMSHRVLEII 86 AA EM RV ++ Sbjct: 61 KAAGEMRERVKSLV 74 >gi|168205088|ref|ZP_02631093.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens E str. JGS1987] gi|170663345|gb|EDT16028.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens E str. JGS1987] Length = 751 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL S EQ A+ + A AGSGKT +L R+ ++ + P +L +T T Sbjct: 1 MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60 Query: 73 AAAAEMSHRVLEII 86 AA EM RV ++ Sbjct: 61 KAAGEMRERVKSLV 74 >gi|146329291|ref|YP_001209094.1| DNA helicase II [Dichelobacter nodosus VCS1703A] gi|146232761|gb|ABQ13739.1| DNA helicase II [Dichelobacter nodosus VCS1703A] Length = 712 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/48 (52%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +LVQR+ L+ +A P LL LT T AA EM R+ Sbjct: 27 VIAGAGSGKTRVLVQRMQWLMTVAGCMPYQLLALTFTNKAAQEMRQRL 74 >gi|145301020|ref|YP_001143861.1| DNA helicase II [Aeromonas salmonicida subsp. salmonicida A449] gi|142853792|gb|ABO92113.1| DNA helicase II [Aeromonas salmonicida subsp. salmonicida A449] Length = 723 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 39/186 (20%), Positives = 70/186 (37%), Gaps = 43/186 (23%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ L+ + P +++ +T T AAAEM RV +++ + Sbjct: 21 PRSNLLVLAGAGSGKTRVLVHRIAWLMQVERCSPFSIIAVTFTNKAAAEMRGRVEKVLGS 80 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 G+ + T H +++ Sbjct: 81 MQR--------------------------------------GMWIGTFHGIAHRLLRAHH 102 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208 L+A + F I D + +LI + + ++ LD +A + DE + Sbjct: 103 LDAGLPQDFQILDSDDQYRLI----RRVIKALNLDEKHWAPRAVMSYINGKKDEGLRPGD 158 Query: 209 SDIISN 214 D+ + Sbjct: 159 IDLYGD 164 >gi|110596834|ref|ZP_01385124.1| UvrD/REP helicase [Chlorobium ferrooxidans DSM 13031] gi|110341521|gb|EAT59981.1| UvrD/REP helicase [Chlorobium ferrooxidans DSM 13031] Length = 740 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 V A AGSGKT ++ R+ L+ P+ +L LT T AA EM HRV ++ A S Sbjct: 25 VLAGAGSGKTRVITYRIAYLISNEGVSPNNILALTFTNKAAGEMRHRVDTLLHAGS 80 >gi|329964807|ref|ZP_08301830.1| UvrD/REP helicase [Bacteroides fluxus YIT 12057] gi|328524658|gb|EGF51721.1| UvrD/REP helicase [Bacteroides fluxus YIT 12057] Length = 767 Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 43/164 (26%), Positives = 63/164 (38%), Gaps = 39/164 (23%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 S+ I +++ + E +L +D + V A AGSGKT +L ++ LL P +L LT Sbjct: 2 SDYIQELNEGQREAVLYNDG--PSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTF 59 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ + A +ARHL + Sbjct: 60 TNKAAREMKERIARQVGA--------------------------DRARHLWMG------- 86 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 T H+ I+ + TS F I D SK L+ K Sbjct: 87 ----TFHSMFLRILHAEAGQLGFTSQFTIYDTADSKSLLRSIIK 126 >gi|146318409|ref|YP_001198121.1| ATP-dependent exoDNAse beta subunit [Streptococcus suis 05ZYH33] gi|146320605|ref|YP_001200316.1| ATP-dependent exoDNAse beta subunit [Streptococcus suis 98HAH33] gi|253750625|ref|YP_003024062.1| exonuclease RexA [Streptococcus suis BM407] gi|251764567|sp|A4W0M7|ADDA_STRS2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|251764570|sp|A4VUD2|ADDA_STRSY RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|145689215|gb|ABP89721.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Streptococcus suis 05ZYH33] gi|145691411|gb|ABP91916.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Streptococcus suis 98HAH33] gi|251819057|emb|CAZ55679.1| exonuclease RexA [Streptococcus suis BM407] gi|292558201|gb|ADE31202.1| putative exonuclease RexA [Streptococcus suis GZ1] Length = 1227 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 33/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 ++ VSA+AGSGKT ++VQR+L L L T T AA E+ R+ Sbjct: 52 QNVLVSASAGSGKTFVMVQRILDKLKRGIGIDQLFISTFTVKAAGELKERI------EKK 105 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 L++ I AE T DM RHL + + + T+ +F + ++ + Sbjct: 106 LNETI--AETT----------DMELRRHLSAQLADLTKA-DIGTMDSFTQKLVTTYGYSL 152 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 I+ F I L +E +K++L + D + F + LE + L+ + Sbjct: 153 GISPQFRI--------LQDETEKASLKKEVFD------QLFADYLEEDENGAFRKLVRNF 198 Query: 212 ISNR 215 NR Sbjct: 199 SGNR 202 >gi|224534483|ref|ZP_03675059.1| exodeoxyribonuclease V, beta subunit [Borrelia spielmanii A14S] gi|224514160|gb|EEF84478.1| exodeoxyribonuclease V, beta subunit [Borrelia spielmanii A14S] Length = 1173 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 3/65 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSHL- 92 + A+AG+GKTHIL VL L+ + + +L LT TK A EM R+L+ I A+ +L Sbjct: 16 IEASAGTGKTHILENLVLNLMKTKLYSINEILVLTFTKKATEEMHARILKAIENAYFNLK 75 Query: 93 SDEIL 97 ++EIL Sbjct: 76 TNEIL 80 >gi|86156526|ref|YP_463311.1| ATP-dependent DNA helicase Rep [Anaeromyxobacter dehalogenans 2CP-C] gi|85773037|gb|ABC79874.1| ATP-dependent DNA helicase, Rep family [Anaeromyxobacter dehalogenans 2CP-C] Length = 797 Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 61/154 (39%), Gaps = 43/154 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++V R+ RL+ P +L +T T AA EM R+ ++ Sbjct: 33 VLAGAGSGKTRVIVHRIARLVRDRGVVPWHVLAVTFTNKAAGEMRERLERLLGPL----- 87 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 AR L VQT HAF +++ A + Sbjct: 88 ----------------------ARELW-----------VQTFHAFGARFLRREAARAGLP 114 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 FAI D++ +L+ K LA + LD E L Sbjct: 115 PSFAIYDDDDQLRLV----KRILAEVGLDEAEGL 144 >gi|261415103|ref|YP_003248786.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371559|gb|ACX74304.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 744 Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 31/50 (62%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 + A AGSGKT +L +R+ +++ P +L LT T AAAEM RV ++ Sbjct: 30 ILAGAGSGKTSVLTKRIQYRIMSGVEPEKILALTFTAKAAAEMRERVQKL 79 >gi|228990313|ref|ZP_04150279.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus pseudomycoides DSM 12442] gi|228769389|gb|EEM17986.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus pseudomycoides DSM 12442] Length = 687 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + N HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLINVKNVHPRNILLLTFTQKAAEEIRSRV 115 >gi|182625530|ref|ZP_02953301.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens D str. JGS1721] gi|177909218|gb|EDT71683.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens D str. JGS1721] Length = 751 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL S EQ A+ + A AGSGKT +L R+ ++ + P +L +T T Sbjct: 1 MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60 Query: 73 AAAAEMSHRVLEII 86 AA EM RV ++ Sbjct: 61 KAAGEMRERVKSLV 74 >gi|160877119|ref|YP_001556435.1| DNA-dependent helicase II [Shewanella baltica OS195] gi|160862641|gb|ABX51175.1| DNA helicase II [Shewanella baltica OS195] gi|315269321|gb|ADT96174.1| DNA helicase II [Shewanella baltica OS678] Length = 722 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L +T Sbjct: 4 SSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61 Query: 70 HTKAAAAEMSHRVLEI 85 T AAAEM RV ++ Sbjct: 62 FTNKAAAEMRERVEKV 77 >gi|88856786|ref|ZP_01131440.1| ATP-dependent DNA helicase [marine actinobacterium PHSC20C1] gi|88813954|gb|EAR23822.1| ATP-dependent DNA helicase [marine actinobacterium PHSC20C1] Length = 1086 Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 T +Q++ P A V A AGSGKT + RV+ L+ N P +L LT T+ AA + Sbjct: 17 TAQQQVVIEAPLSPALVVAGAGSGKTDTMASRVVWLVANNFVSPDQVLGLTFTRKAAGSL 76 Query: 79 SHRVLEII 86 S RV E I Sbjct: 77 SKRVSERI 84 >gi|294142649|ref|YP_003558627.1| DNA helicase II [Shewanella violacea DSS12] gi|293329118|dbj|BAJ03849.1| DNA helicase II [Shewanella violacea DSS12] Length = 721 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 63/158 (39%), Gaps = 43/158 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P S V A AGSGKT +L R+ L+ + P ++L +T T AAAEM RV Sbjct: 21 PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVTFTNKAAAEMRDRV------ 74 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +K + S+M G + + T H +++ Sbjct: 75 ------------------EKVSGSNM--------------GRMWIGTFHGLAHRLLRTHY 102 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 +AN+ F I D + +LI K L S+ LD + Sbjct: 103 KDANLPQTFQIIDSDDQLRLI----KRILKSLNLDEKQ 136 >gi|223044036|ref|ZP_03614076.1| ATP-dependent DNA helicase PcrA [Staphylococcus capitis SK14] gi|222442579|gb|EEE48684.1| ATP-dependent DNA helicase PcrA [Staphylococcus capitis SK14] Length = 731 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKA 73 L+ +EQ A T + A AGSGKT +L R+ LL+ + P +L +T T Sbjct: 4 LVKNMNTEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLVEKDVSPYNILAITFTNK 63 Query: 74 AAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 64 AAKEMKERVEQLV 76 >gi|171057030|ref|YP_001789379.1| UvrD/REP helicase [Leptothrix cholodnii SP-6] gi|170774475|gb|ACB32614.1| UvrD/REP helicase [Leptothrix cholodnii SP-6] Length = 687 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 29/53 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++ ++ RLL A P + +T T AA EM R +I A Sbjct: 25 VLAGAGSGKTRVITHKIARLLQAGLKPDQIAAITFTNKAAQEMRERARSLIGA 77 >gi|169347181|ref|ZP_02866123.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens C str. JGS1495] gi|169296864|gb|EDS78993.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens C str. JGS1495] Length = 751 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL S EQ A+ + A AGSGKT +L R+ ++ + P +L +T T Sbjct: 1 MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60 Query: 73 AAAAEMSHRVLEII 86 AA EM RV ++ Sbjct: 61 KAAGEMRERVKSLV 74 >gi|149910376|ref|ZP_01899018.1| putative exodeoxyribonuclease V [Moritella sp. PE36] gi|149806524|gb|EDM66493.1| putative exodeoxyribonuclease V [Moritella sp. PE36] Length = 1190 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 28/153 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST--------------LLCLTHTKAAAAEMSHR 81 + A+AG+GKT + LRLLL + + +L +T T+AA AE+ R Sbjct: 20 IEASAGTGKTFTIASLYLRLLLGHGGDNAYNKEGQIEALNVDQILVVTFTEAATAELRDR 79 Query: 82 V------LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 + I + + D ++S +T I N+ D ++ L+ + T Sbjct: 80 IRARIHQARIAFSIGNSDDPVISLLLTDI-----NELDYARCAKSLLAAERQMDEAAIYT 134 Query: 136 IHAFCEAIMQQFPLEAN--ITSHFAIADEEQSK 166 IH FC+ +++Q E+ S F I DE Q K Sbjct: 135 IHGFCQRMLKQNAFESGALFESEF-ITDESQLK 166 >gi|126696548|ref|YP_001091434.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9301] gi|126543591|gb|ABO17833.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9301] Length = 1208 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 12/128 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A+AG+GK+ L VLR +L P +L L+ TK +E+ ++L + L Sbjct: 15 VEASAGTGKSFTLAHIVLRNVLEKKVKPDEILLLSFTKNTCSELRDKIL---LRFHTLKV 71 Query: 95 EILSAEITKIQGKKP----NKSDMSKARHLLIT----ILETPGGLKVQTIHAFCEAIMQQ 146 + S KI N D +++ +I+ + LKV T HAFC I+ + Sbjct: 72 YLQSHNEVKIDNTLKDWYLNFKDKDESKENIISEIDNFINQFYKLKVITFHAFCNDIIDE 131 Query: 147 FPLEANIT 154 + +E +T Sbjct: 132 YSIEIGVT 139 >gi|319427815|gb|ADV55889.1| DNA helicase II [Shewanella putrefaciens 200] Length = 722 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L +T Sbjct: 4 SSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61 Query: 70 HTKAAAAEMSHRVLEI 85 T AAAEM RV ++ Sbjct: 62 FTNKAAAEMRERVEKV 77 >gi|110803328|ref|YP_699522.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens SM101] gi|110683829|gb|ABG87199.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens SM101] Length = 751 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL S EQ A+ + A AGSGKT +L R+ ++ + P +L +T T Sbjct: 1 MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60 Query: 73 AAAAEMSHRVLEII 86 AA EM RV ++ Sbjct: 61 KAAGEMRERVKSLV 74 >gi|90407425|ref|ZP_01215609.1| exodeoxyribonuclease V beta chain [Psychromonas sp. CNPT3] gi|90311456|gb|EAS39557.1| exodeoxyribonuclease V beta chain [Psychromonas sp. CNPT3] Length = 1196 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 38/159 (23%) Query: 36 VSANAGSGKTHILVQRVLRLLLA----NAHPSTL-----LCLTHTKAAAAEMSHRVLEII 86 + A+AG+GKT+ + +RLLL N+H + L L +T T+AA AE+ R+ Sbjct: 23 IEASAGTGKTYTIASLFIRLLLGHGDENSHQTPLSVDKILVVTFTEAATAELRSRI---- 78 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK-------------V 133 D I+S + + GK + + LL + LE ++ V Sbjct: 79 ------RDRIISVRLDFMLGKSADPF----VQALLDSSLEIDADIRLLRFAELQMDEAAV 128 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 TIH FC+ ++ Q E+ S F E LIE+A Sbjct: 129 YTIHGFCQRMLMQNAFESG--SLFEQKLLEDDSLLIEQA 165 >gi|304410803|ref|ZP_07392420.1| DNA helicase II [Shewanella baltica OS183] gi|307305026|ref|ZP_07584776.1| DNA helicase II [Shewanella baltica BA175] gi|304350700|gb|EFM15101.1| DNA helicase II [Shewanella baltica OS183] gi|306912428|gb|EFN42852.1| DNA helicase II [Shewanella baltica BA175] Length = 722 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L +T Sbjct: 4 SSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61 Query: 70 HTKAAAAEMSHRVLEI 85 T AAAEM RV ++ Sbjct: 62 FTNKAAAEMRERVEKV 77 >gi|253751554|ref|YP_003024695.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis SC84] gi|253753455|ref|YP_003026596.1| ATP-dependent exonuclease subunit A [Streptococcus suis P1/7] gi|251815843|emb|CAZ51451.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis SC84] gi|251819701|emb|CAR45515.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis P1/7] gi|319757986|gb|ADV69928.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis JS14] Length = 1216 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 33/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 ++ VSA+AGSGKT ++VQR+L L L T T AA E+ R+ Sbjct: 41 QNVLVSASAGSGKTFVMVQRILDKLKRGIGIDQLFISTFTVKAAGELKERI------EKK 94 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 L++ I AE T DM RHL + + + T+ +F + ++ + Sbjct: 95 LNETI--AETT----------DMELRRHLSAQLADLTKA-DIGTMDSFTQKLVTTYGYSL 141 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 I+ F I L +E +K++L + D + F + LE + L+ + Sbjct: 142 GISPQFRI--------LQDETEKASLKKEVFD------QLFADYLEEDENGAFRKLVRNF 187 Query: 212 ISNR 215 NR Sbjct: 188 SGNR 191 >gi|168213169|ref|ZP_02638794.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens CPE str. F4969] gi|170715249|gb|EDT27431.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens CPE str. F4969] Length = 751 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL S EQ A+ + A AGSGKT +L R+ ++ + P +L +T T Sbjct: 1 MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60 Query: 73 AAAAEMSHRVLEII 86 AA EM RV ++ Sbjct: 61 KAAGEMRERVKSLV 74 >gi|294792636|ref|ZP_06757783.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp. 6_1_27] gi|294456535|gb|EFG24898.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp. 6_1_27] Length = 862 Score = 44.3 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 75/184 (40%), Gaps = 40/184 (21%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79 + +Q + + ++ + A+AG+GKT+ L RV L+ + A +LC+T T AA EM Sbjct: 5 REQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGDYAKAENILCMTFTNKAANEMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ ++ + P K+ ++V T H+F Sbjct: 65 GRIQSLVGS--------------------PAKA------------------VEVSTFHSF 86 Query: 140 CEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C I+QQ + + I DEE K+L E + L + N + K + + Sbjct: 87 CFFILQQEGKRNETLYTDVTIFDEEDCKELFEPYRPGKLREMSFANVIAMVKEYRSLYGF 146 Query: 199 SNDE 202 +D+ Sbjct: 147 YSDD 150 >gi|255283739|ref|ZP_05348294.1| ATP-dependent helicase PcrA [Bryantella formatexigens DSM 14469] gi|255265804|gb|EET59009.1| ATP-dependent helicase PcrA [Bryantella formatexigens DSM 14469] Length = 594 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 69/172 (40%), Gaps = 42/172 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHT 71 T D +++ + E +L ++ + A AGSGKT +L RV L+ P +L +T T Sbjct: 3 TYDNLNEMQREAVLHTEG--PLLILAGAGSGKTRVLTHRVAYLIEEKGVKPWNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV D + E G + Sbjct: 61 NKAAGEMRERV-----------DNLAGPE---------------------------AGSV 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIML 182 V T H+ C I+++F ++F I D + K L+++ KK + + ML Sbjct: 83 WVSTFHSLCVRILRRFIDRLGYENNFTIYDTDDQKSLMKDICKKLNIDTKML 134 >gi|56461651|ref|YP_156932.1| DNA-dependent helicase II [Idiomarina loihiensis L2TR] gi|56180661|gb|AAV83383.1| Superfamily I DNA helicase, UvrD [Idiomarina loihiensis L2TR] Length = 723 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 43/150 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ + P ++L +T T AAAEM RV +++ Sbjct: 27 VLAGAGSGKTRVLVHRIAWLIQERQYSPFSILAVTFTNKAAAEMRGRVEQLVG------- 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 S R G+ + T H +++ ++ + Sbjct: 80 --------------------SSVR-----------GMWIGTFHGLAHRLLRAHYMDVGLP 108 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 +F I D + ++LI K + S+ LD+ Sbjct: 109 QNFQIIDSDDQQRLI----KRLIKSLNLDD 134 >gi|18311242|ref|NP_563176.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens str. 13] gi|18145925|dbj|BAB81966.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13] Length = 751 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL S EQ A+ + A AGSGKT +L R+ ++ + P +L +T T Sbjct: 1 MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60 Query: 73 AAAAEMSHRVLEII 86 AA EM RV ++ Sbjct: 61 KAAGEMRERVKSLV 74 >gi|120597399|ref|YP_961973.1| DNA-dependent helicase II [Shewanella sp. W3-18-1] gi|146294460|ref|YP_001184884.1| DNA-dependent helicase II [Shewanella putrefaciens CN-32] gi|120557492|gb|ABM23419.1| ATP-dependent DNA helicase UvrD [Shewanella sp. W3-18-1] gi|145566150|gb|ABP77085.1| ATP-dependent DNA helicase UvrD [Shewanella putrefaciens CN-32] Length = 722 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L +T Sbjct: 4 SSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61 Query: 70 HTKAAAAEMSHRVLEI 85 T AAAEM RV ++ Sbjct: 62 FTNKAAAEMRERVEKV 77 >gi|291523576|emb|CBK81869.1| Superfamily I DNA and RNA helicases [Coprococcus catus GD/7] Length = 666 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A GSGKT ++ RV L+ A HP+ +L +T TKAAA EM R + ++ Sbjct: 20 VLAGPGSGKTMVITHRVKWLIEHAGVHPAGILVVTFTKAAADEMRQRFVSLMDG 73 >gi|290242989|ref|YP_003494659.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix] gi|288945494|gb|ADC73192.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix] Length = 704 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 30/49 (61%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A + A AG+GKT L +R R+L + HP LL LT ++ AA EM R+ Sbjct: 21 ALILAGAGAGKTATLTERTARMLESGHHPENLLMLTFSRKAAREMYARL 69 >gi|209972997|ref|YP_002300444.1| gp34.33 [Bacillus phage SPO1] gi|209871317|gb|ACI91073.1| gp34.33 [Bacillus phage SPO1] Length = 978 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 33/53 (62%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 ++A AGSGKT +L R+ +L +LC T+TK A EM+ R+ ++I++ Sbjct: 49 INAVAGSGKTRVLTSRIAYMLSTGIKARHILCTTYTKKATQEMTERLSKLISS 101 >gi|110800092|ref|YP_696932.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens ATCC 13124] gi|110674739|gb|ABG83726.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens ATCC 13124] Length = 751 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL S EQ A+ + A AGSGKT +L R+ ++ + P +L +T T Sbjct: 1 MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60 Query: 73 AAAAEMSHRVLEII 86 AA EM RV ++ Sbjct: 61 KAAGEMRERVKSLV 74 >gi|302335487|ref|YP_003800694.1| UvrD/REP helicase [Olsenella uli DSM 7084] gi|301319327|gb|ADK67814.1| UvrD/REP helicase [Olsenella uli DSM 7084] Length = 1176 Score = 44.3 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 40/171 (23%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPS---------TLLCLTHTKAAAAEMSHRV 82 R +V+A AGSGK+ L +RV L + +L +T T+AAA E+ ++ Sbjct: 18 RPLFVAAGAGSGKSSTLAERVAWALTPGSGAKGTAFLESLDQVLVITFTRAAAEEIKEKI 77 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + L+D+ L+ + I TIHA C Sbjct: 78 RARLRE-GGLADQALAVDSAWIS-----------------------------TIHAMCSR 107 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN-EELKKAF 192 I+++ + I F + E+ K+++EEA L + D L +AF Sbjct: 108 ILRRHAFDLGIDLGFEVLSEKDGKRMVEEAVDEVLRDVRYDEGYASLLRAF 158 >gi|300173052|ref|YP_003772218.1| recombination helicase AddA [Leuconostoc gasicomitatum LMG 18811] gi|299887431|emb|CBL91399.1| recombination helicase AddA [Leuconostoc gasicomitatum LMG 18811] Length = 1242 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 32/47 (68%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V+A+AGSGKT +L++R+++ +L+ L +T T AAA EM R+ Sbjct: 22 VAASAGSGKTTVLIERLIQKILSGTSVENFLIVTFTNAAAKEMRERL 68 >gi|188586746|ref|YP_001918291.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351433|gb|ACB85703.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 864 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 38/143 (26%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 S V+A G+GKT ++ R ++ P+ +LCLT T AA EM R+ Sbjct: 30 SLLVTAPVGTGKTSVISLRAANAIVNGFDPNKILCLTFTNRAAREMKERI---------- 79 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 IQ P + + ++T HA C I++ Sbjct: 80 -----------IQDLGPRAQNTT-----------------IKTFHALCAEIIRIESDILG 111 Query: 153 ITSHFAIADEEQSKKLIEEAKKS 175 I + F I DEE +K ++ + K+ Sbjct: 112 IPADFNIFDEEDAKTILNDVIKT 134 >gi|262276563|ref|ZP_06054372.1| exodeoxyribonuclease V beta chain [Grimontia hollisae CIP 101886] gi|262220371|gb|EEY71687.1| exodeoxyribonuclease V beta chain [Grimontia hollisae CIP 101886] Length = 1187 Score = 44.3 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 26/145 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-----AHPSTL-----LCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT + LRLLL + AHP L L +T T+AA E+ R+ Sbjct: 19 IEASAGTGKTFTIAGLYLRLLLGHGNKDTAHPRPLSVDKILVVTFTEAATQELRDRIRSR 78 Query: 86 I----TAWS--HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 I A+S H D ++ + I +D +A LL+ + TIH F Sbjct: 79 IHDARLAFSRGHSDDPVIKPLLDDI-------ADHVQAERLLLQAERQMDEAAIYTIHGF 131 Query: 140 CEAIMQQFPLEAN--ITSHFAIADE 162 C+ ++ Q E+ T+ F I DE Sbjct: 132 CQRMLTQNAFESGSLFTNEF-ITDE 155 >gi|260591581|ref|ZP_05857039.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319] gi|260536381|gb|EEX18998.1| putative ATP-dependent DNA helicase [Prevotella veroralis F0319] Length = 896 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 31/55 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 V A+ G GKTHIL +R+ +LCLT T AA EM++R+ +++ S Sbjct: 27 VLASPGCGKTHILAERIRYAREKGVRYEDMLCLTFTNRAAREMTNRIQKVVGGDS 81 >gi|227498096|ref|ZP_03928269.1| ATP-dependent DNA helicase [Actinomyces urogenitalis DSM 15434] gi|226832489|gb|EEH64872.1| ATP-dependent DNA helicase [Actinomyces urogenitalis DSM 15434] Length = 972 Score = 44.3 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 43/137 (31%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL A P +L +T T AAAEM RV ++ Sbjct: 153 IIAGAGSGKTRVLTHRIAYLLATGRARPGEILAITFTNKAAAEMRERVAGLV-------- 204 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIHAFCEAIMQQFPLEAN 152 P G + V T H+ C I+++ A Sbjct: 205 --------------------------------GPAGERMWVSTFHSACVRILRREHEAAG 232 Query: 153 ITSHFAIADEEQSKKLI 169 + S F+I D S++LI Sbjct: 233 LRSTFSIYDSADSQRLI 249 >gi|209695575|ref|YP_002263504.1| DNA helicase IV [Aliivibrio salmonicida LFI1238] gi|208009527|emb|CAQ79819.1| helicase IV [Aliivibrio salmonicida LFI1238] Length = 687 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 4/80 (5%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 SF E+ L +S LL D T V A AGSGKT +LV RV L+ + A P Sbjct: 187 SFFSECESQPLNESQQSALLLNEDHTL---VLAGAGSGKTSVLVARVNYLIKSQVAQPEE 243 Query: 65 LLCLTHTKAAAAEMSHRVLE 84 +L L + AA EMS R++E Sbjct: 244 ILLLAFGRQAAQEMSARIIE 263 >gi|220917224|ref|YP_002492528.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1] gi|219955078|gb|ACL65462.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1] Length = 726 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 28/50 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT L RV RL+ P +L LT T AA EM RV E+ Sbjct: 40 VIAGAGSGKTRTLTWRVARLVADGVAPEGILLLTFTNKAAREMLRRVEEV 89 >gi|126172693|ref|YP_001048842.1| DNA-dependent helicase II [Shewanella baltica OS155] gi|217974967|ref|YP_002359718.1| DNA-dependent helicase II [Shewanella baltica OS223] gi|125995898|gb|ABN59973.1| ATP-dependent DNA helicase UvrD [Shewanella baltica OS155] gi|217500102|gb|ACK48295.1| DNA helicase II [Shewanella baltica OS223] Length = 722 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L +T Sbjct: 4 SSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61 Query: 70 HTKAAAAEMSHRVLEI 85 T AAAEM RV ++ Sbjct: 62 FTNKAAAEMRERVEKV 77 >gi|225027668|ref|ZP_03716860.1| hypothetical protein EUBHAL_01927 [Eubacterium hallii DSM 3353] gi|224954982|gb|EEG36191.1| hypothetical protein EUBHAL_01927 [Eubacterium hallii DSM 3353] Length = 667 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 3/50 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVL 83 V A GSGKT ++ RV + L+ NA HPS +L +T T+AAA EM R Sbjct: 22 VLAGPGSGKTLVITYRV-KWLIENAGVHPSNILVITFTRAAAEEMRKRFF 70 >gi|125718261|ref|YP_001035394.1| exonuclease RexA, putative [Streptococcus sanguinis SK36] gi|251764569|sp|A3CNT9|ADDA_STRSV RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|125498178|gb|ABN44844.1| Exonuclease RexA, putative [Streptococcus sanguinis SK36] Length = 1224 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 R+ VSA+AGSGKT ++VQR++ +L S L T T AA E+ R+ Sbjct: 41 RNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKERL 91 >gi|58698437|ref|ZP_00373347.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of Drosophila ananassae] gi|58535060|gb|EAL59149.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of Drosophila ananassae] Length = 893 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Query: 106 GKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIAD 161 G + NK +++AR L + GL +QTIHAFC ++ FP+EA I + +++ Sbjct: 23 GSRKNKDYLTRARRLFSELENL--GLTIQTIHAFCYKLISSFPIEAGIAPNCTLSE 76 >gi|288800136|ref|ZP_06405595.1| putative UvrD/REP helicase domain protein [Prevotella sp. oral taxon 299 str. F0039] gi|288333384|gb|EFC71863.1| putative UvrD/REP helicase domain protein [Prevotella sp. oral taxon 299 str. F0039] Length = 1076 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 12/173 (6%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95 A+AGSGKT L ++LL+ + +L +T T A EM R+L + S L D Sbjct: 10 ASAGSGKTFTLTIEYIKLLIKDPLSYKQILAVTFTNKATEEMKMRILSQLYGLSRLLPDS 69 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 EI K + + ++ L ++ ++QTI F + ++ E ++T+ Sbjct: 70 NAYLEIIKKDTELSEEQIRQRSSLALGYLIHNYSYFQIQTIDTFFQGVLNNLARELDLTA 129 Query: 156 HFAIA-DEEQSK-----KLIEE--AKKSTLASI--MLDNNEELKKAFYEILEI 198 + ++EQ K +LIEE K L + +L+ N+E KA+ I E+ Sbjct: 130 KLRVTLNDEQLKERAVDRLIEELDPKNKVLKWVLDLLEENQEENKAWNVISEL 182 >gi|256544405|ref|ZP_05471780.1| DNA helicase II [Anaerococcus vaginalis ATCC 51170] gi|256399937|gb|EEU13539.1| DNA helicase II [Anaerococcus vaginalis ATCC 51170] Length = 862 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHR 81 ++L+ D A V A G+GKT +VQ+++ L+ + P+ +L T TK AA E+ R Sbjct: 6 QKLIVEDAKYPAAVLAGPGTGKTFTIVQKIISLIKNDGISPNKILVTTFTKKAANELIER 65 Query: 82 V 82 V Sbjct: 66 V 66 >gi|220915236|ref|YP_002490540.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953090|gb|ACL63474.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1] Length = 797 Score = 44.3 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 43/154 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++V R+ RL+ P +L +T T AA EM R+ ++ Sbjct: 33 VLAGAGSGKTRVIVHRIARLVRDRGVVPWHVLAVTFTNKAAGEMRERLERLLGPL----- 87 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 AR L VQT HAF +++ A ++ Sbjct: 88 ----------------------ARELW-----------VQTFHAFGARFLRREAARAGLS 114 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 FAI D++ +L+ K L+ + LD E L Sbjct: 115 PSFAIYDDDDQLRLV----KGLLSELGLDEGEGL 144 >gi|197120525|ref|YP_002132476.1| UvrD/REP helicase [Anaeromyxobacter sp. K] gi|196170374|gb|ACG71347.1| UvrD/REP helicase [Anaeromyxobacter sp. K] Length = 797 Score = 44.3 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 43/154 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++V R+ RL+ P +L +T T AA EM R+ ++ Sbjct: 33 VLAGAGSGKTRVIVHRIARLVRDRGVVPWHVLAVTFTNKAAGEMRERLERLLGPL----- 87 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 AR L VQT HAF +++ A ++ Sbjct: 88 ----------------------ARELW-----------VQTFHAFGARFLRREAARAGLS 114 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 FAI D++ +L+ K L+ + LD E L Sbjct: 115 PSFAIYDDDDQLRLV----KGLLSELGLDEGEGL 144 >gi|257075414|ref|ZP_05569775.1| UvrD/REP helicase [Ferroplasma acidarmanus fer1] Length = 889 Score = 44.3 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 1/57 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 +R + A AG+GKT +L +R++ LLL +A P +++ T T AA EM +RVL+ I Sbjct: 23 SRYIKILAGAGAGKTEVLTRRIVNLLLNTDAPPESIVAFTFTDKAAKEMKNRVLKRI 79 >gi|153002398|ref|YP_001368079.1| DNA-dependent helicase II [Shewanella baltica OS185] gi|151367016|gb|ABS10016.1| DNA helicase II [Shewanella baltica OS185] Length = 722 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L +T Sbjct: 4 SSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61 Query: 70 HTKAAAAEMSHRVLEI 85 T AAAEM RV ++ Sbjct: 62 FTNKAAAEMRERVEKV 77 >gi|89092193|ref|ZP_01165147.1| DNA helicase II [Oceanospirillum sp. MED92] gi|89083281|gb|EAR62499.1| DNA helicase II [Oceanospirillum sp. MED92] Length = 737 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 39/146 (26%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P ++ V A AGSGKT +LV R+ L+ P +++ +T T AA EM R+ E++ Sbjct: 21 PVKNLLVLAGAGSGKTRVLVHRIAWLIQTEGISPYSIMAVTFTNKAAKEMRGRIEELLGL 80 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 P G+ V T H +++ Sbjct: 81 --------------------------------------NPQGMWVGTFHGLAHRLLRAHW 102 Query: 149 LEANITSHFAIADEEQSKKLIEEAKK 174 +A + +F I D + +LI+ K Sbjct: 103 QDAGLPENFQIMDSDDQLRLIKRLAK 128 >gi|114049045|ref|YP_739595.1| DNA-dependent helicase II [Shewanella sp. MR-7] gi|113890487|gb|ABI44538.1| ATP-dependent DNA helicase UvrD [Shewanella sp. MR-7] Length = 722 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L +T Sbjct: 4 SSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61 Query: 70 HTKAAAAEMSHRVLEI 85 T AAAEM RV ++ Sbjct: 62 FTNKAAAEMRERVEKV 77 >gi|168211266|ref|ZP_02636891.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens B str. ATCC 3626] gi|170710740|gb|EDT22922.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens B str. ATCC 3626] Length = 751 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL S EQ A+ + A AGSGKT +L R+ ++ + P +L +T T Sbjct: 1 MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60 Query: 73 AAAAEMSHRVLEII 86 AA EM RV ++ Sbjct: 61 KAAGEMRERVKSLV 74 >gi|86158232|ref|YP_465017.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774743|gb|ABC81580.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C] Length = 725 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 28/50 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT L RV RL+ P +L LT T AA EM RV E+ Sbjct: 40 VIAGAGSGKTRTLTWRVARLVADGVAPEGILLLTFTNKAAREMLRRVEEV 89 >gi|113968817|ref|YP_732610.1| DNA-dependent helicase II [Shewanella sp. MR-4] gi|113883501|gb|ABI37553.1| ATP-dependent DNA helicase UvrD [Shewanella sp. MR-4] Length = 722 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L +T Sbjct: 4 SSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61 Query: 70 HTKAAAAEMSHRVLEI 85 T AAAEM RV ++ Sbjct: 62 FTNKAAAEMRERVEKV 77 >gi|117918924|ref|YP_868116.1| DNA-dependent helicase II [Shewanella sp. ANA-3] gi|117611256|gb|ABK46710.1| ATP-dependent DNA helicase UvrD [Shewanella sp. ANA-3] Length = 722 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L +T Sbjct: 4 SSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61 Query: 70 HTKAAAAEMSHRVLEI 85 T AAAEM RV ++ Sbjct: 62 FTNKAAAEMRERVEKV 77 >gi|260904113|ref|ZP_05912435.1| UvrD/REP helicase [Brevibacterium linens BL2] Length = 1061 Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 3/69 (4%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRV 82 ++ +DP +S V+A AGSGKT ++ QRV+ L+AN P +L LT T+ A E+ R+ Sbjct: 29 IIEADPQQSMKVTAGAGSGKTTVISQRVI-WLVANGFVDPEEILGLTFTRKAVGELGGRI 87 Query: 83 LEIITAWSH 91 ++ H Sbjct: 88 RVLLARLRH 96 >gi|42526415|ref|NP_971513.1| ATP-dependent DNA helicase PcrA [Treponema denticola ATCC 35405] gi|41816608|gb|AAS11394.1| ATP-dependent DNA helicase PcrA [Treponema denticola ATCC 35405] Length = 662 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 38/137 (27%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A AGSGKT ++ R+ +L S +L LT T AA EM+ RV E+ Sbjct: 27 AGAGSGKTRVITFRIAHMLDKGIPQSQILALTFTNKAAKEMADRVKELT----------- 75 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157 GKK L V T HAF +++ + S+F Sbjct: 76 --------GKKLQN-------------------LTVSTFHAFGVKVLRSHIDKIGWRSNF 108 Query: 158 AIADEEQSKKLIEEAKK 174 +I DE +LI+E + Sbjct: 109 SIYDETDRNQLIKECGR 125 >gi|116490406|ref|YP_809950.1| DNA helicase/exodeoxyribonuclease V, subunit A [Oenococcus oeni PSU-1] gi|122277405|sp|Q04GY7|ADDA_OENOB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116091131|gb|ABJ56285.1| DNA helicase/exodeoxyribonuclease V, subunit A [Oenococcus oeni PSU-1] Length = 1186 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 38/64 (59%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 ++A P + V+A+AGSGKT +L++ V + LL+ L T T AAA EM +R+ + Sbjct: 10 VIAHIPDHNLLVAASAGSGKTTVLIEHVYQQLLSGKSIDRFLISTFTDAAALEMKNRLEK 69 Query: 85 IITA 88 I A Sbjct: 70 RIRA 73 >gi|291458763|ref|ZP_06598153.1| ATP-dependent nuclease subunit A [Oribacterium sp. oral taxon 078 str. F0262] gi|291418680|gb|EFE92399.1| ATP-dependent nuclease subunit A [Oribacterium sp. oral taxon 078 str. F0262] Length = 1234 Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAA 76 T+ ++ + S + V+A AGSGKT +LV+ V+ LL P S LL +T T++AAA Sbjct: 6 TEEQERVISHRGGNLLVAAAAGSGKTAVLVEHVISLLTEREDPTSLSELLIMTFTESAAA 65 Query: 77 EMSHRV 82 EM R+ Sbjct: 66 EMKERI 71 >gi|291615299|ref|YP_003525456.1| UvrD/REP helicase [Sideroxydans lithotrophicus ES-1] gi|291585411|gb|ADE13069.1| UvrD/REP helicase [Sideroxydans lithotrophicus ES-1] Length = 722 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 57/148 (38%), Gaps = 40/148 (27%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+S EQ A + P RSA + A AGSGKT +L R+ L+ P +L +T T Sbjct: 5 LLSGLNPEQRAAVELPARSALILAGAGSGKTRVLTTRIAWLISTGQVSPHGILAVTFTNK 64 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM +T++ P + G+ + Sbjct: 65 AAKEM----------------------VTRLSAMLPINTR----------------GMWI 86 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIAD 161 T H C +++ EAN+ F I D Sbjct: 87 GTFHGLCNRMLRAHHREANLPQTFQILD 114 >gi|124010006|ref|ZP_01694669.1| ATP-dependent DNA helicase PcrA [Microscilla marina ATCC 23134] gi|123983964|gb|EAY24352.1| ATP-dependent DNA helicase PcrA [Microscilla marina ATCC 23134] Length = 743 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 8/67 (11%) Query: 28 SDPTRSA--------WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 +DP R A + A AGSGKT +L R+ L+ +L LT T AA EM Sbjct: 9 NDPQREAVLHKDGPIMIIAGAGSGKTRVLTNRIAHLIGTGVPAYNILALTFTNKAAGEMR 68 Query: 80 HRVLEII 86 R+ +II Sbjct: 69 LRIEKII 75 >gi|24372062|ref|NP_716104.1| DNA-dependent helicase II [Shewanella oneidensis MR-1] gi|24345940|gb|AAN53549.1|AE015495_3 DNA helicase II [Shewanella oneidensis MR-1] Length = 722 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L +T Sbjct: 4 SSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61 Query: 70 HTKAAAAEMSHRVLEI 85 T AAAEM RV ++ Sbjct: 62 FTNKAAAEMRERVEKV 77 >gi|332035180|gb|EGI71690.1| exodeoxyribonuclease V beta chain [Pseudoalteromonas haloplanktis ANT/505] Length = 1192 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 22/133 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHPST--LLCLTHTKAAAAEMSHRVL-EI 85 + A+AG+GKT+ + LR LL N S +L +T T AA E+ RV I Sbjct: 17 IEASAGTGKTYTITGLYLRYLLGMQIEGELNTPLSVEQILVVTFTDAATQEIKDRVRSRI 76 Query: 86 ITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 I A L +DE++ I KI D +A LL ++ + TIH FC Sbjct: 77 IAARDALLGQDPNDELIEGVIAKI-------DDKHRAFDLLDAAAKSMDEAAIFTIHGFC 129 Query: 141 EAIMQQFPLEANI 153 + +++Q E+ + Sbjct: 130 QRMLKQHAFESGV 142 >gi|303233965|ref|ZP_07320614.1| UvrD/REP helicase [Finegoldia magna BVS033A4] gi|302494890|gb|EFL54647.1| UvrD/REP helicase [Finegoldia magna BVS033A4] Length = 967 Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 88/209 (42%), Gaps = 44/209 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +I +++++L S ++ V+A AG+GKT ++ +R + +++C+T T AA Sbjct: 1 MIKFSENQKLAYSTINQNVCVNAGAGTGKTEVVSERFRYMYEKGIDIKSIVCITFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+++ + + D + V T Sbjct: 61 DEMKDRIIQKLNNPRLIDD------------------------------------INVST 84 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC+ I+ +I F I +++Q+ KL+ E + +L+N + K Sbjct: 85 ISSFCKKIVSDNSYYLSIDPSFQIIEDDQANKLLNE-----IFDKILENRIDFIKKLGRK 139 Query: 196 LEISNDEDIETL---ISDIISNRTALKLI 221 L+IS + ++ + + + +N KLI Sbjct: 140 LDISYSDTLKIIRDSFNKLRTNNIDFKLI 168 >gi|297569240|ref|YP_003690584.1| UvrD/REP helicase [Desulfurivibrio alkaliphilus AHT2] gi|296925155|gb|ADH85965.1| UvrD/REP helicase [Desulfurivibrio alkaliphilus AHT2] Length = 760 Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 59/150 (39%), Gaps = 41/150 (27%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 S P V A AGSGKT LV R+ L+ P +LL LT T+ AA EM Sbjct: 34 SAPAGPILVIAGAGSGKTRTLVHRLAYLVEQGVAPESLLLLTFTRKAAQEM--------- 84 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL--ITILETPGGLKVQTIHAFCEAIMQ 145 +++A HLL + + GG T HA I++ Sbjct: 85 --------------------------IARAGHLLPDASCRQVTGG----TFHATANLILR 114 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKS 175 ++ ++F I D+ ++ +I K S Sbjct: 115 RYAAHVGYRANFTILDQGDAEGIINLLKSS 144 >gi|197122458|ref|YP_002134409.1| UvrD/REP helicase [Anaeromyxobacter sp. K] gi|196172307|gb|ACG73280.1| UvrD/REP helicase [Anaeromyxobacter sp. K] Length = 726 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 28/50 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT L RV RL+ P +L LT T AA EM RV E+ Sbjct: 40 VIAGAGSGKTRTLTWRVARLVADGVAPEGILLLTFTNKAAREMLRRVEEV 89 >gi|302380542|ref|ZP_07269007.1| UvrD/REP helicase [Finegoldia magna ACS-171-V-Col3] gi|302311485|gb|EFK93501.1| UvrD/REP helicase [Finegoldia magna ACS-171-V-Col3] Length = 967 Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 88/209 (42%), Gaps = 44/209 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +I +++++L S ++ V+A AG+GKT ++ +R + +++C+T T AA Sbjct: 1 MIKFSENQKLAYSTINQNVCVNAGAGTGKTEVVSERFRYMYEKGIDIKSIVCITFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+++ + + D + V T Sbjct: 61 DEMKDRIIQKLNNPRLIDD------------------------------------INVST 84 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC+ I+ +I F I +++Q+ KL+ E + +L+N + K Sbjct: 85 ISSFCKKIVSDNSYYLSIDPSFQIIEDDQANKLLNE-----IFDKILENRIDFIKKLGRK 139 Query: 196 LEISNDEDIETL---ISDIISNRTALKLI 221 L+IS + ++ + + + +N KLI Sbjct: 140 LDISYSDTLKIIRDSFNKLRTNNIDFKLI 168 >gi|169824301|ref|YP_001691912.1| putative ATP-dependent exonuclease [Finegoldia magna ATCC 29328] gi|167831106|dbj|BAG08022.1| putative ATP-dependent exonuclease [Finegoldia magna ATCC 29328] Length = 967 Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 88/209 (42%), Gaps = 44/209 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +I +++++L S ++ V+A AG+GKT ++ +R + +++C+T T AA Sbjct: 1 MIKFSENQKLAYSTINQNVCVNAGAGTGKTEVVSERFRYMYEKGIDIKSIVCITFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+++ + + D + V T Sbjct: 61 DEMKDRIIQKLNNPRLIDD------------------------------------INVST 84 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC+ I+ +I F I +++Q+ KL+ E + +L+N + K Sbjct: 85 ISSFCKKIVSDNSYYLSIDPSFQIIEDDQANKLLNE-----IFDKILENRIDFIKKLGRK 139 Query: 196 LEISNDEDIETL---ISDIISNRTALKLI 221 L+IS + ++ + + + +N KLI Sbjct: 140 LDISYSDTLKIIRDSFNKLRTNNIDFKLI 168 >gi|111022536|ref|YP_705508.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1] gi|110822066|gb|ABG97350.1| probable ATP-dependent DNA helicase [Rhodococcus jostii RHA1] Length = 828 Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 40/136 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ LL P +L +T T AAAEM RV ++ Sbjct: 51 IVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFTNKAAAEMRERVAHLV-------- 102 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 G + N + V T H+ C I++ Q L + Sbjct: 103 -----------GPRANS-------------------MWVSTFHSSCVRILRAQAALLPGL 132 Query: 154 TSHFAIADEEQSKKLI 169 S+F+I D + S++L+ Sbjct: 133 NSNFSIYDADDSRRLL 148 >gi|24373706|ref|NP_717749.1| exodeoxyribonuclease V, beta subunit [Shewanella oneidensis MR-1] gi|24348071|gb|AAN55193.1|AE015657_5 exodeoxyribonuclease V, beta subunit [Shewanella oneidensis MR-1] Length = 1259 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 15/156 (9%) Query: 22 SEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHT 71 + Q L DP S + A+AG+GKT+ + LRLLL + L C +T T Sbjct: 6 TSQALPLDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGLSEPLSCEQILVVTFT 65 Query: 72 KAAAAEMSHRVLEIITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 AA E+ R+ I L EI + + K P +S+ + A L++ Sbjct: 66 NAATEELRDRIRRRIQVAFKCFLGLEINDPFVQALYDKTP-ESERAIALRRFDLALKSLD 124 Query: 130 GLKVQTIHAFCEAIMQQFPLEANI--TSHFAIADEE 163 + TIH FC+ I+ E+++ S F + D E Sbjct: 125 EAAIFTIHGFCQRILADLAFESSLLFESDFTLDDSE 160 >gi|319947958|ref|ZP_08022138.1| UvrD/REP helicase [Dietzia cinnamea P4] gi|319438386|gb|EFV93326.1| UvrD/REP helicase [Dietzia cinnamea P4] Length = 1140 Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 25/127 (19%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII 86 +D + +V A AG+GKT+ LV+R+ LLL +A P + +T T+ AAAE+ R Sbjct: 15 TDTAATLFVEAGAGTGKTYALVRRLSTLLLDDAVPIDRIAAITFTEKAAAELRDR----- 69 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 L + + + + ++D + A L+T + T+H+F ++ + Sbjct: 70 ----------LRVHLVERRAEGDTRADKALAG------LDTAA---IGTLHSFALRLLSE 110 Query: 147 FPLEANI 153 PLEA I Sbjct: 111 NPLEAGI 117 >gi|290889814|ref|ZP_06552901.1| hypothetical protein AWRIB429_0291 [Oenococcus oeni AWRIB429] gi|290480424|gb|EFD89061.1| hypothetical protein AWRIB429_0291 [Oenococcus oeni AWRIB429] Length = 1186 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 38/64 (59%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 ++A P + V+A+AGSGKT +L++ V + LL+ L T T AAA EM +R+ + Sbjct: 10 VIAHIPDHNLLVAASAGSGKTTVLIEHVYQQLLSGKSIDRFLISTFTDAAALEMKNRLEK 69 Query: 85 IITA 88 I A Sbjct: 70 RIRA 73 >gi|254282526|ref|ZP_04957494.1| DNA helicase II [gamma proteobacterium NOR51-B] gi|219678729|gb|EED35078.1| DNA helicase II [gamma proteobacterium NOR51-B] Length = 718 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 Q +A++P+ V A AGSGKT +LV R+ L+ A N P+ +L +T T AA EM R+ Sbjct: 16 QAVAAEPSHQL-VLAGAGSGKTRVLVHRIAWLIRAENYSPNAVLAVTFTNKAAREMRGRI 74 Query: 83 LEIITAWSH 91 ++ +H Sbjct: 75 ESMLQLPTH 83 >gi|197121750|ref|YP_002133701.1| UvrD/REP helicase [Anaeromyxobacter sp. K] gi|196171599|gb|ACG72572.1| UvrD/REP helicase [Anaeromyxobacter sp. K] Length = 1195 Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 21/139 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-----HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 VSA AGSGKT LV+ +RLL +A P L +T T+ AA E+ Sbjct: 23 VSAGAGSGKTTALVELCVRLLEGSALGSPCEPRALAAITFTEKAAEEL------------ 70 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 +E L A +T + +AR L L + V TIH FC ++++ E Sbjct: 71 ---EERLRAAVTARARAAREAPESPEARAWL-ERLHGLDAMAVGTIHGFCGRLLREHAPE 126 Query: 151 ANITSHFAIADEEQSKKLI 169 A + A+ DE+++ I Sbjct: 127 AGLDPEAAVLDEDRASAWI 145 >gi|160895394|ref|ZP_02076164.1| hypothetical protein CLOL250_02952 [Clostridium sp. L2-50] gi|156862965|gb|EDO56396.1| hypothetical protein CLOL250_02952 [Clostridium sp. L2-50] Length = 1247 Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 95/211 (45%), Gaps = 44/211 (20%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPS-------TLL 66 IS T ++ + + + VSA AGSGKT +LV+R+L +++ A+ + + +L Sbjct: 3 ISWTDEQKSVINSRHGNLLVSAAAGSGKTAVLVERILEMVMGVDADGNKAEEKIDIDEVL 62 Query: 67 CLTHTKAAAAEMSHRVLEII--TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +T T+AAAA+M ++ + + A H DE + +++ + ++D Sbjct: 63 VVTFTRAAAAQMKEKIADKLEQAAEDHPEDEHIVKQLSLLP-----RAD----------- 106 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 + TI +FC I++ + I S F IAD + ++ K L ++ Sbjct: 107 --------IMTIDSFCLGIVKDYFQMIGIDSSFDIADNAE----MDLIKNDILDEVLEQK 154 Query: 185 NEELKKAFYEILEI----SNDEDIETLISDI 211 +E F +++ +DE I L+ I Sbjct: 155 YQEASDEFIGLVDSFARKESDEKIRELVYQI 185 >gi|322411491|gb|EFY02399.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 1210 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 24/159 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW-SHLSD 94 VSA+AGSGKT ++V+R+L +L L T T AA E+ R+ + + A + SD Sbjct: 46 VSASAGSGKTFVMVERILDKILRGVSVDRLFISTFTVKAATELRERIEKKLYAQIAKTSD 105 Query: 95 EILSAEIT-KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 +L A +T ++Q +S+A + T+ AF + ++ ++ I Sbjct: 106 PLLKAYLTDQLQA-------LSQA--------------DIGTMDAFAQKVLIRYGYSIGI 144 Query: 154 TSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + F I D+ + L+ + M ++ L KA Sbjct: 145 SPQFRIMQDKAEQDILMRDVFSKLFEEFMTQDDSSLFKA 183 >gi|260199970|ref|ZP_05767461.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis T46] gi|289442365|ref|ZP_06432109.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis T46] gi|289415284|gb|EFD12524.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis T46] Length = 769 Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 40/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ L+ A +L +T T AAAEM RV+ ++ Sbjct: 40 IVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVG------- 92 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 KAR++ ++ T H+ C I++ Q L + Sbjct: 93 --------------------EKARYMWVS-----------TFHSTCVRILRNQAALIEGL 121 Query: 154 TSHFAIADEEQSKKLIE 170 S+F+I D + S++L++ Sbjct: 122 NSNFSIYDADDSRRLLQ 138 >gi|215402750|ref|ZP_03414931.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis 02_1987] gi|289744679|ref|ZP_06504057.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis 02_1987] gi|289685207|gb|EFD52695.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis 02_1987] Length = 770 Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 40/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ L+ A +L +T T AAAEM RV+ ++ Sbjct: 40 IVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVG------- 92 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 KAR++ ++ T H+ C I++ Q L + Sbjct: 93 --------------------EKARYMWVS-----------TFHSTCVRILRNQAALIEGL 121 Query: 154 TSHFAIADEEQSKKLIE 170 S+F+I D + S++L++ Sbjct: 122 NSNFSIYDADDSRRLLQ 138 >gi|168183573|ref|ZP_02618237.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Bf] gi|237796712|ref|YP_002864264.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Ba4 str. 657] gi|182673320|gb|EDT85281.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Bf] gi|229262342|gb|ACQ53375.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Ba4 str. 657] Length = 738 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Query: 14 IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL ++ EQ A+ + A AGSGKT +L R+ ++ N +PS +L +T T Sbjct: 1 MDLKNKLNKEQYEAATTIDGPLLILAGAGSGKTRVLTHRIAHMIENLNIYPSKILAITFT 60 Query: 72 KAAAAEMSHRV 82 AA EM R+ Sbjct: 61 NKAAGEMKERI 71 >gi|167847823|ref|ZP_02473331.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei B7210] Length = 639 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138 >gi|166157034|emb|CAO79491.1| putative UvrD/REP helicase [uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11] Length = 710 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT ++ +R+ L+ N P +L LT T+ AA EM RV +I+ Sbjct: 28 VVAGAGTGKTRVITERIRYLIKEKNVDPQEILALTFTEKAAQEMVDRVGDIM 79 >gi|15840373|ref|NP_335410.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis CDC1551] gi|31792138|ref|NP_854631.1| ATP dependent DNA helicase UVRD1 [Mycobacterium bovis AF2122/97] gi|57116803|ref|YP_177772.1| ATP-dependent DNA helicase II UVRD1 [Mycobacterium tuberculosis H37Rv] gi|121636874|ref|YP_977097.1| putative ATP dependent DNA helicase uvrD1 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660728|ref|YP_001282251.1| putative ATP dependent DNA helicase UvrD1 [Mycobacterium tuberculosis H37Ra] gi|148822158|ref|YP_001286912.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis F11] gi|167967811|ref|ZP_02550088.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis H37Ra] gi|224989345|ref|YP_002644032.1| putative ATP dependent dna helicase [Mycobacterium bovis BCG str. Tokyo 172] gi|253800024|ref|YP_003033025.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN 1435] gi|254231256|ref|ZP_04924583.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis C] gi|289555271|ref|ZP_06444481.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN 605] gi|294996434|ref|ZP_06802125.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis 210] gi|297633471|ref|ZP_06951251.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis KZN 4207] gi|297730456|ref|ZP_06959574.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis KZN R506] gi|306775079|ref|ZP_07413416.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu001] gi|306782007|ref|ZP_07420344.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu002] gi|306783628|ref|ZP_07421950.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu003] gi|306787992|ref|ZP_07426314.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu004] gi|306792329|ref|ZP_07430631.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu005] gi|306796727|ref|ZP_07435029.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu006] gi|306802615|ref|ZP_07439283.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu008] gi|306806794|ref|ZP_07443462.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu007] gi|306966993|ref|ZP_07479654.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu009] gi|306971186|ref|ZP_07483847.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu010] gi|307078913|ref|ZP_07488083.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu011] gi|307083471|ref|ZP_07492584.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu012] gi|313657784|ref|ZP_07814664.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis KZN V2475] gi|61229774|sp|P0A5A3|PCRA_MYCTU RecName: Full=ATP-dependent DNA helicase pcrA gi|61229776|sp|P0A5A4|PCRA_MYCBO RecName: Full=ATP-dependent DNA helicase pcrA gi|13880539|gb|AAK45224.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis CDC1551] gi|31617726|emb|CAD93835.1| PROBABLE ATP DEPENDENT DNA HELICASE UVRD1 [Mycobacterium bovis AF2122/97] gi|41353625|emb|CAE55341.1| PROBABLE ATP-DEPENDENT DNA HELICASE II UVRD1 [Mycobacterium tuberculosis H37Rv] gi|121492521|emb|CAL70989.1| Probable ATP dependent dna helicase uvrD1 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600315|gb|EAY59325.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis C] gi|148504880|gb|ABQ72689.1| putative ATP dependent DNA helicase UvrD1 [Mycobacterium tuberculosis H37Ra] gi|148720685|gb|ABR05310.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis F11] gi|224772458|dbj|BAH25264.1| putative ATP dependent dna helicase [Mycobacterium bovis BCG str. Tokyo 172] gi|253321527|gb|ACT26130.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN 1435] gi|289439903|gb|EFD22396.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN 605] gi|308216426|gb|EFO75825.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu001] gi|308325244|gb|EFP14095.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu002] gi|308331626|gb|EFP20477.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu003] gi|308335437|gb|EFP24288.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu004] gi|308339243|gb|EFP28094.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu005] gi|308342888|gb|EFP31739.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu006] gi|308346806|gb|EFP35657.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu007] gi|308350722|gb|EFP39573.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu008] gi|308355383|gb|EFP44234.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu009] gi|308359322|gb|EFP48173.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu010] gi|308363229|gb|EFP52080.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu011] gi|308366886|gb|EFP55737.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu012] gi|323720660|gb|EGB29738.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis CDC1551A] gi|328459767|gb|AEB05190.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN 4207] Length = 771 Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 40/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ L+ A +L +T T AAAEM RV+ ++ Sbjct: 40 IVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVG------- 92 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 KAR++ ++ T H+ C I++ Q L + Sbjct: 93 --------------------EKARYMWVS-----------TFHSTCVRILRNQAALIEGL 121 Query: 154 TSHFAIADEEQSKKLIE 170 S+F+I D + S++L++ Sbjct: 122 NSNFSIYDADDSRRLLQ 138 >gi|323140468|ref|ZP_08075396.1| ATP-dependent DNA helicase PcrA [Phascolarctobacterium sp. YIT 12067] gi|322415036|gb|EFY05827.1| ATP-dependent DNA helicase PcrA [Phascolarctobacterium sp. YIT 12067] Length = 741 Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 41/141 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A AGSGKT +L R+ LL P +L +T T AAAEM RV Sbjct: 25 ILAGAGSGKTKVLTCRIAHLLQQGVRPYRILAITFTNKAAAEMRERV------------- 71 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE--ANI 153 ++ + AR + + T HAFC ++ ++ LE Sbjct: 72 --------------DRMAGAAARDVWLF-----------TFHAFCARLL-RYELENLNGY 105 Query: 154 TSHFAIADEEQSKKLIEEAKK 174 ++FAI D SK LI++ K Sbjct: 106 ANNFAIYDTSDSKNLIKQVMK 126 >gi|301310959|ref|ZP_07216888.1| UvrD/REP helicase domain protein [Bacteroides sp. 20_3] gi|300831022|gb|EFK61663.1| UvrD/REP helicase domain protein [Bacteroides sp. 20_3] Length = 1055 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 10/127 (7%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIIT--AWSHLSD 94 A+AG+GKTH L L LL + +L +T T A EM R+++ + A SD Sbjct: 7 ASAGAGKTHKLTGEYLMLLFSQPGAYRRILAVTFTNKATDEMKTRIVQELYHLASGRASD 66 Query: 95 --EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 ++LS+ + + + +AR +L+ IL + TI F + M+ F E Sbjct: 67 YIQLLSSAYSLTE-----RQVREQARKILVAILHDYSAFNISTIDRFFQQTMRAFTREIG 121 Query: 153 ITSHFAI 159 + + I Sbjct: 122 LQGGYGI 128 >gi|171912708|ref|ZP_02928178.1| UvrD/REP helicase [Verrucomicrobium spinosum DSM 4136] Length = 672 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID ++ +Q A + P + V A AGSGKT +L RV LL P +L +T T Sbjct: 16 IDYRAELNEQQFAAVTAPAGQSLVIAGAGSGKTRVLTYRVAYLLDNGIAPENILLVTFTN 75 Query: 73 AAAAEMSHRVLEII 86 A+ EM RV ++ Sbjct: 76 KASREMLDRVQNLL 89 >gi|320526748|ref|ZP_08027938.1| putative ATP-dependent nuclease subunit A [Solobacterium moorei F0204] gi|320132716|gb|EFW25256.1| putative ATP-dependent nuclease subunit A [Solobacterium moorei F0204] Length = 1107 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 6/83 (7%) Query: 18 SQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHP----STLLCLTHTK 72 +Q +EQ +A + + VSA+AG+GKT +LV R+++ + + +P S +L LT T+ Sbjct: 7 NQLSAEQSVACNSSGMGIVVSASAGAGKTKVLVSRLVKRCIED-NPRVPLSRILALTFTE 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDE 95 AAA+EM RV + + L+++ Sbjct: 66 AAASEMKKRVAQELNEIKQLAEK 88 >gi|222529276|ref|YP_002573158.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725] gi|222456123|gb|ACM60385.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725] Length = 714 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 V A AGSGKT ++ R+ +L + A+P+ +L +T T AA EM R+ +++ S Sbjct: 24 VLAGAGSGKTRVITYRIAYILNMGLANPANILAITFTNKAADEMKERIKRLVSTQS 79 >gi|169825828|ref|YP_001695986.1| ATP-dependent DNA helicase pcrA [Lysinibacillus sphaericus C3-41] gi|168990316|gb|ACA37856.1| ATP-dependent DNA helicase pcrA [Lysinibacillus sphaericus C3-41] Length = 749 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 13 TIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70 T +L++ EQ A T + A AGSGKT +L R+ L++ +PS +L +T Sbjct: 5 TKNLLAGMNPEQERAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLIIEKEVYPSKVLAITF 64 Query: 71 TKAAAAEMSHRVLEII 86 T AA EM R+ I+ Sbjct: 65 TNKAAREMRERIDGIL 80 >gi|139438971|ref|ZP_01772431.1| Hypothetical protein COLAER_01437 [Collinsella aerofaciens ATCC 25986] gi|133775682|gb|EBA39502.1| Hypothetical protein COLAER_01437 [Collinsella aerofaciens ATCC 25986] Length = 1210 Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 37/152 (24%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEII 86 R +VSA AGSGKT L +R++ L + P +L +T TK AAAE+ RV Sbjct: 19 RPLFVSAGAGSGKTFTLTRRIVYALSPESGPFVEHLDQVLAITFTKDAAAEIRDRVRRA- 77 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 L DE + E + + TIH C I++ Sbjct: 78 -----LIDEGMDEEALTVDDA------------------------WISTIHGMCSRILRA 108 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 LE I F + + + +L+++A + LA Sbjct: 109 HALELGIDPEFTVLTD--TDELMDQAVEHVLA 138 >gi|262384055|ref|ZP_06077191.1| ATP-dependent helicase [Bacteroides sp. 2_1_33B] gi|262294953|gb|EEY82885.1| ATP-dependent helicase [Bacteroides sp. 2_1_33B] Length = 1055 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 10/127 (7%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIIT--AWSHLSD 94 A+AG+GKTH L L LL + +L +T T A EM R+++ + A SD Sbjct: 7 ASAGAGKTHKLTGEYLMLLFSQPGAYRRILAVTFTNKATDEMKTRIVQELYHLASGRASD 66 Query: 95 --EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 ++LS+ + + + +AR +L+ IL + TI F + M+ F E Sbjct: 67 YIQLLSSAYSLTE-----RQVREQARKILVAILHDYSAFNISTIDRFFQQTMRAFTREIG 121 Query: 153 ITSHFAI 159 + + I Sbjct: 122 LQGGYGI 128 >gi|256841725|ref|ZP_05547231.1| ATP-dependent helicase [Parabacteroides sp. D13] gi|256736619|gb|EEU49947.1| ATP-dependent helicase [Parabacteroides sp. D13] Length = 1055 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 10/127 (7%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIIT--AWSHLSD 94 A+AG+GKTH L L LL + +L +T T A EM R+++ + A SD Sbjct: 7 ASAGAGKTHKLTGEYLMLLFSQPGAYRRILAVTFTNKATDEMKTRIVQELYHLASGRASD 66 Query: 95 --EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 ++LS+ + + + +AR +L+ IL + TI F + M+ F E Sbjct: 67 YIQLLSSAYSLTE-----RQVREQARKILVAILHDYSAFNISTIDRFFQQTMRAFTREIG 121 Query: 153 ITSHFAI 159 + + I Sbjct: 122 LQGGYGI 128 >gi|255015776|ref|ZP_05287902.1| ATP-dependent helicase [Bacteroides sp. 2_1_7] gi|298377090|ref|ZP_06987044.1| UvrD/REP helicase domain protein [Bacteroides sp. 3_1_19] gi|298266074|gb|EFI07733.1| UvrD/REP helicase domain protein [Bacteroides sp. 3_1_19] Length = 1055 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 10/127 (7%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIIT--AWSHLSD 94 A+AG+GKTH L L LL + +L +T T A EM R+++ + A SD Sbjct: 7 ASAGAGKTHKLTGEYLMLLFSQPGAYRRILAVTFTNKATDEMKTRIVQELYHLASGRASD 66 Query: 95 --EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 ++LS+ + + + +AR +L+ IL + TI F + M+ F E Sbjct: 67 YIQLLSSAYSLTE-----RQVREQARKILVAILHDYSAFNISTIDRFFQQTMRAFTREIG 121 Query: 153 ITSHFAI 159 + + I Sbjct: 122 LQGGYGI 128 >gi|78184983|ref|YP_377418.1| exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp. CC9902] gi|78169277|gb|ABB26374.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus sp. CC9902] Length = 1208 Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 9/124 (7%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM----SHRVLEIITAWS 90 + A+AG+GKT L LRL+ A+P LL +T+T+AAA E+ R+ + + Sbjct: 19 LEASAGTGKTFALAHLTLRLITEAAYPLEALLVVTYTEAAAEELRSRIGQRLQQALVGLE 78 Query: 91 HLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 L +E+ + + + +D L+ LE + TIH FC +++ Sbjct: 79 QLENEMFPSAPDPVMAAWWEQCTASADRRIRIRRLLVALEQLDRADIATIHGFCRRSLRR 138 Query: 147 FPLE 150 L+ Sbjct: 139 LALD 142 >gi|320536129|ref|ZP_08036182.1| putative ATP-dependent DNA helicase PcrA [Treponema phagedenis F0421] gi|320147046|gb|EFW38609.1| putative ATP-dependent DNA helicase PcrA [Treponema phagedenis F0421] Length = 664 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 53/137 (38%), Gaps = 38/137 (27%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A AGSGKT ++ R+ +L S +L LT T AA EM R+ E+ Sbjct: 26 AGAGSGKTRVITFRIAHMLDRGIPQSQILALTFTNKAAREMEERIKELT----------- 74 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157 GKK L V T HAF I+++ S+F Sbjct: 75 --------GKKLQN-------------------LTVSTFHAFGVKILREHIAALGWRSNF 107 Query: 158 AIADEEQSKKLIEEAKK 174 +I DE +LI+E K Sbjct: 108 SIYDETDRNQLIKELGK 124 >gi|303326130|ref|ZP_07356573.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp. 3_1_syn3] gi|302864046|gb|EFL86977.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp. 3_1_syn3] Length = 1125 Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 5/90 (5%) Query: 4 HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63 H+ E + L S+ ++ L A + A G+GKT +L+ R+ RLL A P Sbjct: 504 HSEPAEQPASATLFSEEQNAALNAG--PGPVLILAGPGAGKTRVLIGRLQRLLEEGARPQ 561 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 LL +T T+ AA E+ R + A HLS Sbjct: 562 DLLAVTFTRRAAGELRER---LSAALPHLS 588 >gi|120610596|ref|YP_970274.1| ATP-dependent DNA helicase UvrD [Acidovorax citrulli AAC00-1] gi|120589060|gb|ABM32500.1| ATP-dependent DNA helicase UvrD [Acidovorax citrulli AAC00-1] Length = 818 Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKA 73 L+ EQL A + P A + A AGSGKT +L R+ LL A P ++L +T T Sbjct: 31 LLQNLNDEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQNGYASPGSILAVTFTNK 90 Query: 74 AAAEMSHRV 82 AA EM+ R+ Sbjct: 91 AAKEMTARL 99 >gi|159902871|ref|YP_001550215.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9211] gi|159888047|gb|ABX08261.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9211] Length = 809 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 66/146 (45%), Gaps = 22/146 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+ PS +L +T T AA EM R LE+ Sbjct: 29 VVAGAGSGKTRALTHRIAHLITEYKVDPSEILAVTFTNKAAREMKER-LEL--------- 78 Query: 95 EILSAEITKIQGKKPNKS-DMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQQFPLEAN 152 +L+ I K Q +P S + + I E L + T HA ++ +F +E Sbjct: 79 -LLAKRIAKYQLDQPWSSVSLVEQNQFRTRIYREVTKDLWIGTFHALFSKLL-RFDIEKF 136 Query: 153 I-------TSHFAIADEEQSKKLIEE 171 + T +F+I DE ++ LI+E Sbjct: 137 VDKEGLKWTKYFSIYDETDAQSLIKE 162 >gi|13358064|ref|NP_078338.1| DNA helicase II [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762416|ref|YP_001752584.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920094|ref|ZP_02931516.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508498|ref|ZP_02958027.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701747|ref|ZP_02971434.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|11267430|pir||D82883 DNA helicase II UU501 [imported] - Ureaplasma urealyticum gi|6899500|gb|AAF30913.1|AE002148_5 DNA helicase II [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827993|gb|ACA33255.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902450|gb|EDT48739.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675926|gb|EDT87831.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701018|gb|EDU19300.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 743 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ L+ N HPS +L T T AA EM RV + I Sbjct: 27 VIAGAGTGKTSVLTLRIAYLITEKNIHPSRILGFTFTNKAADEMKERVGKTI 78 >gi|310643059|ref|YP_003947817.1| recombination helicase adda [Paenibacillus polymyxa SC2] gi|309248009|gb|ADO57576.1| Recombination helicase AddA [Paenibacillus polymyxa SC2] Length = 1339 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 3/54 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V+A AGSGKT +LV+R++R ++ LL T TKAAAAEM R+ E + Sbjct: 35 VAAAAGSGKTAVLVERIIRKIVDPRLGFSVDRLLVATFTKAAAAEMRQRIREAL 88 >gi|307565702|ref|ZP_07628171.1| putative ATP-dependent helicase PcrA [Prevotella amnii CRIS 21A-A] gi|307345528|gb|EFN90896.1| putative ATP-dependent helicase PcrA [Prevotella amnii CRIS 21A-A] Length = 845 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 + V A AGSGKT +L ++ LL + P +L LT T AA EM R+ +I Sbjct: 27 SLVVAGAGSGKTRVLTYKIAYLLESGLKPWNILALTFTNKAAREMKDRIAKI 78 >gi|221202128|ref|ZP_03575163.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD2M] gi|221209064|ref|ZP_03582059.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD2] gi|221171059|gb|EEE03511.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD2] gi|221177922|gb|EEE10334.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD2M] Length = 781 Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 108 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 156 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 157 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 202 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 203 PQFSIMDSDDCFGMIQEQIGTT 224 >gi|53724405|ref|YP_104505.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 23344] gi|121598749|ref|YP_994582.1| ATP-dependent DNA helicase Rep [Burkholderia mallei SAVP1] gi|124385848|ref|YP_001027516.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10229] gi|126450982|ref|YP_001082587.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10247] gi|238561590|ref|ZP_00441881.2| ATP-dependent DNA helicase Rep [Burkholderia mallei GB8 horse 4] gi|254174927|ref|ZP_04881588.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 10399] gi|254201583|ref|ZP_04907947.1| ATP-dependent DNA helicase Rep [Burkholderia mallei FMH] gi|254206917|ref|ZP_04913268.1| ATP-dependent DNA helicase Rep [Burkholderia mallei JHU] gi|254357473|ref|ZP_04973747.1| ATP-dependent DNA helicase Rep [Burkholderia mallei 2002721280] gi|52427828|gb|AAU48421.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 23344] gi|121227559|gb|ABM50077.1| ATP-dependent DNA helicase Rep [Burkholderia mallei SAVP1] gi|124293868|gb|ABN03137.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10229] gi|126243852|gb|ABO06945.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10247] gi|147747477|gb|EDK54553.1| ATP-dependent DNA helicase Rep [Burkholderia mallei FMH] gi|147752459|gb|EDK59525.1| ATP-dependent DNA helicase Rep [Burkholderia mallei JHU] gi|148026537|gb|EDK84622.1| ATP-dependent DNA helicase Rep [Burkholderia mallei 2002721280] gi|160695972|gb|EDP85942.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 10399] gi|238524389|gb|EEP87822.1| ATP-dependent DNA helicase Rep [Burkholderia mallei GB8 horse 4] Length = 700 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138 >gi|222053487|ref|YP_002535849.1| UvrD/REP helicase [Geobacter sp. FRC-32] gi|221562776|gb|ACM18748.1| UvrD/REP helicase [Geobacter sp. FRC-32] Length = 746 Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 63/160 (39%), Gaps = 48/160 (30%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT ++V R+ L+ P +L +T T AAAEM RV +++ Sbjct: 24 ILAGAGSGKTRVIVHRIAYLITERGVPPWQILAVTFTNKAAAEMRGRVEKLL-------- 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIHAFCEAIMQQFPLEAN 152 PGG + T H+ C I+++ Sbjct: 76 ---------------------------------PGGETPLISTFHSACARILRREIHHLG 102 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 S FAI D++ +KLI+E +A + LD K F Sbjct: 103 YDSSFAIYDDKDGEKLIKE----IVAELHLDEKRFPAKLF 138 >gi|312601375|gb|ADQ90630.1| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae 168] Length = 753 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 55/189 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AG+GKT +L +++ ++ + A+PS +L LT T AA EM +RV +++ Sbjct: 27 IVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTNKAAEEMRNRVEKLVG------- 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NI 153 E +++ T H+ C I++ LEA NI Sbjct: 80 -------------------------------EKSKDIQILTFHSLCNLILR---LEAKNI 105 Query: 154 TS---------HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK-KAFYEILEISNDED 203 F I DE+ KK++E+ L + D+ +E K AF I ISN ++ Sbjct: 106 VELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYLKA--NDDRDETKISAFDAIKFISNAKN 163 Query: 204 IETLISDII 212 E D++ Sbjct: 164 WEKSPEDLL 172 >gi|223041651|ref|ZP_03611848.1| DNA helicase II [Actinobacillus minor 202] gi|223017515|gb|EEF15929.1| DNA helicase II [Actinobacillus minor 202] Length = 731 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 36/137 (26%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 S P + V A AGSGKT +L R+ L+ + N S +L +T T AAAEM R+ Sbjct: 19 SAPIGNYLVLAGAGSGKTRVLTHRIAWLIGIENIPESNILAVTFTNKAAAEMRQRI---- 74 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 ++ + ++ H + G+ V T H+ +++ Sbjct: 75 ------------------------EATLEQSSHNMF-------GMWVGTFHSIANRLLRS 103 Query: 147 FPLEANITSHFAIADEE 163 L+AN+ F I D E Sbjct: 104 HYLDANLPQDFQIMDTE 120 >gi|54020194|ref|YP_115928.1| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae 232] gi|53987367|gb|AAV27568.1| ATP-dependent DNA helicase [Mycoplasma hyopneumoniae 232] Length = 769 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 55/189 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AG+GKT +L +++ ++ + A+PS +L LT T AA EM +RV +++ Sbjct: 43 IVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTNKAAEEMRNRVEKLVG------- 95 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NI 153 E +++ T H+ C I++ LEA NI Sbjct: 96 -------------------------------EKSKDIQILTFHSLCNLILR---LEAKNI 121 Query: 154 TS---------HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK-KAFYEILEISNDED 203 F I DE+ KK++E+ L + D+ +E K AF I ISN ++ Sbjct: 122 VELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYLKAN--DDRDETKISAFDAIKFISNAKN 179 Query: 204 IETLISDII 212 E D++ Sbjct: 180 WEKSPEDLL 188 >gi|73540567|ref|YP_295087.1| ATP-dependent DNA helicase UvrD [Ralstonia eutropha JMP134] gi|72117980|gb|AAZ60243.1| ATP-dependent DNA helicase UvrD [Ralstonia eutropha JMP134] Length = 786 Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 DL++ +EQL A + P A + A AGSGKT +L R+ L+ P+ +L +T T Sbjct: 3 DLLANLNAEQLAAVTLPDEPALILAGAGSGKTRVLTTRIAWLIQNGRVSPAGILAVTFTN 62 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ ++ Sbjct: 63 KAAKEMQTRLSSML 76 >gi|261400846|ref|ZP_05986971.1| ATP-dependent DNA helicase Rep [Neisseria lactamica ATCC 23970] gi|269209307|gb|EEZ75762.1| ATP-dependent DNA helicase Rep [Neisseria lactamica ATCC 23970] Length = 733 Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 74/187 (39%), Gaps = 49/187 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 20 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML-------- 71 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 KP GL + T HA I+++ Sbjct: 72 ------------PKPQTR-----------------GLTICTFHALGMKILREEANHIGYK 102 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND----EDIETLISD 210 +F+I D S K+I E T E + KA ++I ND ED+ S+ Sbjct: 103 KNFSILDSTDSAKIIGELLGGT-------GKEAIFKAQHQISLWKNDLKTPEDVLQTASN 155 Query: 211 IISNRTA 217 I +TA Sbjct: 156 IWEQQTA 162 >gi|71893767|ref|YP_279213.1| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae J] Length = 748 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 55/189 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AG+GKT +L +++ ++ + A+PS +L LT T AA EM +RV +++ Sbjct: 22 IVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTNKAAEEMRNRVEKLVG------- 74 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NI 153 E +++ T H+ C I++ LEA NI Sbjct: 75 -------------------------------EKSKDIQILTFHSLCNLILR---LEAKNI 100 Query: 154 TS---------HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK-KAFYEILEISNDED 203 F I DE+ KK++E+ L + D+ +E K AF I ISN ++ Sbjct: 101 VELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYLKAN--DDRDETKISAFDAIKFISNAKN 158 Query: 204 IETLISDII 212 E D++ Sbjct: 159 WEKSPEDLL 167 >gi|53720964|ref|YP_109950.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei K96243] gi|126441529|ref|YP_001060912.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 668] gi|126451499|ref|YP_001068210.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106a] gi|134281638|ref|ZP_01768346.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 305] gi|217424087|ref|ZP_03455587.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 576] gi|226193195|ref|ZP_03788805.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pakistan 9] gi|242314228|ref|ZP_04813244.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106b] gi|254183976|ref|ZP_04890567.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1655] gi|254186442|ref|ZP_04892959.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pasteur 52237] gi|254261078|ref|ZP_04952132.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710a] gi|52211378|emb|CAH37368.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei K96243] gi|126221022|gb|ABN84528.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 668] gi|126225141|gb|ABN88681.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106a] gi|134247305|gb|EBA47391.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 305] gi|157934127|gb|EDO89797.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pasteur 52237] gi|184214508|gb|EDU11551.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1655] gi|217393150|gb|EEC33172.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 576] gi|225934795|gb|EEH30772.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pakistan 9] gi|242137467|gb|EES23869.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106b] gi|254219767|gb|EET09151.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710a] Length = 695 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138 >gi|320104388|ref|YP_004179979.1| UvrD/REP helicase [Isosphaera pallida ATCC 43644] gi|319751670|gb|ADV63430.1| UvrD/REP helicase [Isosphaera pallida ATCC 43644] Length = 841 Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 33/51 (64%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ +R+ L+ + A S++L +T T AA EM R+ +I+ Sbjct: 42 VLAGAGSGKTRVITRRIAYLIRSGAVGSSILAITFTNKAAGEMKRRIEDIV 92 >gi|295095005|emb|CBK84096.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Coprococcus sp. ART55/1] Length = 1280 Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 32/189 (16%) Query: 36 VSANAGSGKTHILVQRVLRLL---------LANAHPST---LLCLTHTKAAAAEMSHRVL 83 VSA AGSGKT +LV+R++ ++ + + P + LL +T T AAAA+M ++ Sbjct: 30 VSAAAGSGKTAVLVERIIEMVAGRNSRGDRIEGSEPVSVDELLVVTFTNAAAAQMKEKI- 88 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + L +I ++ K + K L+ + TI +FC I Sbjct: 89 ----------GQALQKKIDEMMAKGEYDEHLIKQMTLI-------NHADICTIDSFCLRI 131 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++++ + F IAD+ + K + + + M +E + F ++ + Sbjct: 132 VKEYFARVELDCAFGIADDTEMKIIKHDVMDQVME--MCYEDESVVPGFDRLIMTFARNE 189 Query: 204 IETLISDII 212 ++ + DI+ Sbjct: 190 SDSAVPDIV 198 >gi|297567904|ref|YP_003686874.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946] gi|296852353|gb|ADH65366.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946] Length = 646 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 4/65 (6%) Query: 28 SDPTR----SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 +DP R A V A AG+GKT L QRV L+ P ++ +T T AA EM R+ Sbjct: 2 NDPIRHKEGPALVFAGAGAGKTRTLTQRVKWLVEEGEDPYSITLVTFTNKAAGEMKERIA 61 Query: 84 EIITA 88 ++ A Sbjct: 62 RLVEA 66 >gi|194334487|ref|YP_002016347.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271] gi|194312305|gb|ACF46700.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271] Length = 743 Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 39/162 (24%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 D++ Q Q A T V A AGSGKT ++ R+ L+ P +L LT T Sbjct: 3 DILQQLNDVQRQAVQTTSGPVMVLAGAGSGKTRVITYRIAYLIEQERVEPHQILALTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM HR+ D++L T+ GL Sbjct: 63 KAAKEMRHRI-----------DQLLHQGSTR--------------------------GLW 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + T H+ I++ + S+F+I D + SK L+++ K Sbjct: 86 IGTFHSVFARILRNYIHLIGYNSNFSIYDSDDSKSLVKQVMK 127 >gi|312794911|ref|YP_004027833.1| ATP-dependent DNA helicase rep [Burkholderia rhizoxinica HKI 454] gi|312166686|emb|CBW73689.1| ATP-dependent DNA helicase rep (EC 3.6.1.-) [Burkholderia rhizoxinica HKI 454] Length = 714 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 21 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 69 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 70 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAAHVGLK 115 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 116 PQFSIMDADDCFAMIQEQIGTT 137 >gi|312793467|ref|YP_004026390.1| uvrd/rep helicase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180607|gb|ADQ40777.1| UvrD/REP helicase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 714 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 V A AGSGKT ++ R+ +L + A+P +L +T T AA EM R+ +++ S Sbjct: 24 VLAGAGSGKTRVITYRIAYILNMGLANPGNILAITFTNKAADEMKERIKRLVSTQS 79 >gi|302392152|ref|YP_003827972.1| UvrD/REP helicase [Acetohalobium arabaticum DSM 5501] gi|302204229|gb|ADL12907.1| UvrD/REP helicase [Acetohalobium arabaticum DSM 5501] Length = 1033 Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 20/194 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD- 94 + A+AG+GKT+ L + LL ++ +T T+ A AE+ R+ E HL D Sbjct: 5 LKASAGTGKTYRLSLEYVAALLRGEDFGKIVVMTFTRKATAEIRERIFE------HLEDI 58 Query: 95 --EILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 E +E+ K + N + D+S+ + +L +KV TI +F I ++ Sbjct: 59 LAEGAESEVVKNLEEIYNDLEVDLSQLEEVYEKMLCNKDQIKVYTIDSFINHIFREAIAP 118 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE---TL 207 + I D++Q+++++E K L NN K + L + + DI+ TL Sbjct: 119 YLGIYSYEIVDDDQNREIVERVFKELL------NNPADFKLMEDFLLENVERDIDNYLTL 172 Query: 208 ISDIISNRTALKLI 221 I +I +R LI Sbjct: 173 IDRLIKDRWKFLLI 186 >gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62] gi|254040629|gb|ACT57425.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62] Length = 685 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 45/150 (30%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AG+GKT +L+ R+L L+ PS +L +T T A EM +R+ +L ++I Sbjct: 50 AGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLA------CYLGEKI 103 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 ++QT H+FC +I+++ + + Sbjct: 104 ----------------------------------PRIQTFHSFCASILRKHGEVVGLPTD 129 Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 FAI D +S+ +I K L + +D+ + Sbjct: 130 FAILDSAESRTII----KQLLKDLQIDDKD 155 >gi|188588674|ref|YP_001919827.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E3 str. Alaska E43] gi|188498955|gb|ACD52091.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E3 str. Alaska E43] Length = 749 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 39/138 (28%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT +L R+ ++ P +L +T T AA EM RV+ +I Sbjct: 26 AGAGSGKTRVLTYRMAHMIEDMGIAPYNILAITFTNKAAKEMKDRVISLIG--------- 76 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 SKA ++ I+ T H+ C I+++ + TS+ Sbjct: 77 ------------------SKAENMWIS-----------TFHSTCVRILRREIDKIGYTSN 107 Query: 157 FAIADEEQSKKLIEEAKK 174 F I D K LI+E K Sbjct: 108 FTIYDTSDQKVLIKECMK 125 >gi|90414255|ref|ZP_01222235.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum 3TCK] gi|90324702|gb|EAS41243.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum 3TCK] Length = 724 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 41/157 (26%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A +++ +T T Sbjct: 7 LDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLVHRIAWLMQIEQASSYSIMSVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E+ +QG + G+ Sbjct: 65 KAAAEMRGRINEL------------------MQG--------------------SSAGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T H C +++ L+A + F I D + +L+ Sbjct: 87 NGTFHGLCHRMLRAHYLDARLPDDFNILDSDDQMRLL 123 >gi|32474455|ref|NP_867449.1| ATP-dependent DNA helicase [Rhodopirellula baltica SH 1] gi|32444993|emb|CAD74995.1| ATP-dependent DNA helicase [Rhodopirellula baltica SH 1] gi|327539457|gb|EGF26072.1| ATP-dependent DNA helicase PcrA [Rhodopirellula baltica WH47] Length = 671 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 28/133 (21%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AG+GKT ++ R+ L+ P +L +T T AA EM RV E++ Sbjct: 26 VLAGAGTGKTRVVTFRIANLIKHGVKPDRILAVTFTNKAAGEMQDRVGELL--------- 76 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 G K K + + P + T HA C I+++ + Sbjct: 77 ----------GYKNQKRKRGQ---------KAPPKPTISTFHAQCVRILREHAPAIGFPA 117 Query: 156 HFAIADEEQSKKL 168 FAI D + L Sbjct: 118 TFAIYDRSDQESL 130 >gi|326797393|ref|YP_004315213.1| UvrD/REP helicase [Marinomonas mediterranea MMB-1] gi|326548157|gb|ADZ93377.1| UvrD/REP helicase [Marinomonas mediterranea MMB-1] Length = 736 Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 3/74 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +D ++ + E + A P +++ V A AGSGKT +LV R+ L+ A P +L+ +T T Sbjct: 7 LDALNDKQREAVAA--PLQNSLVLAGAGSGKTRVLVHRIAWLMHAYELSPYSLMAVTFTN 64 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +++ Sbjct: 65 KAAREMQGRIEQLV 78 >gi|319404491|emb|CBI78098.1| DNA helicase II [Bartonella rochalimae ATCC BAA-1498] Length = 815 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L L AHP +L +T T AA EM R+ E++ Sbjct: 63 VLAGAGTGKTRVLTTRISHILHLGLAHPKQILAVTFTNKAAHEMKTRIGELV 114 >gi|167582799|ref|ZP_02375673.1| ATP-dependent DNA helicase Rep [Burkholderia thailandensis TXDOH] Length = 695 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138 >gi|148273735|ref|YP_001223296.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831665|emb|CAN02634.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 816 Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 57/147 (38%), Gaps = 39/147 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ L+ + A PS +L +T T AAAEM RV ++ S Sbjct: 55 IVAGAGSGKTRVLTHRIASLIESREAWPSQILAITFTNKAAAEMRERVESLLGQASE--- 111 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G+ + T H+ C I+++ T Sbjct: 112 -----------------------------------GMWISTFHSACVRILRREAEAFGFT 136 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIM 181 +F I D S+ LI+ K A + Sbjct: 137 QNFTIYDSADSRVLIKRIIKQLDADTL 163 >gi|260906166|ref|ZP_05914488.1| putative ATP-dependent DNA helicase II [Brevibacterium linens BL2] Length = 850 Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRV-LRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ L AHP +L +T T AA EM+ RV I+ S Sbjct: 43 IVAGAGSGKTTVLTRRIAYALATGRAHPGEVLAITFTNKAAKEMAERVRSIVGPASR--- 99 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + V T H+ C I+++ + Sbjct: 100 -----------------------------------AMWVSTFHSSCVRILRREAKVLGMK 124 Query: 155 SHFAIADEEQSKKLIEEAKK 174 S+F I D + +++L+ + K Sbjct: 125 SNFTIYDSQDAQRLVSQILK 144 >gi|298387758|ref|ZP_06997309.1| UvrD/REP helicase domain-containing protein [Bacteroides sp. 1_1_14] gi|298259614|gb|EFI02487.1| UvrD/REP helicase domain-containing protein [Bacteroides sp. 1_1_14] Length = 1057 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + D+ Sbjct: 9 ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDKD 67 Query: 97 LSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A + +I + K+ + A L +L +V+TI +F +++M+ E ++ Sbjct: 68 SEAYLNRIKEETKRTEQEIREAAGIALGYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127 Query: 155 SHFAI 159 + I Sbjct: 128 PNLNI 132 >gi|237814293|ref|YP_002898744.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei MSHR346] gi|237505661|gb|ACQ97979.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei MSHR346] Length = 695 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138 >gi|144227619|gb|AAZ44502.2| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae J] Length = 753 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 55/189 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AG+GKT +L +++ ++ + A+PS +L LT T AA EM +RV +++ Sbjct: 27 IVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTNKAAEEMRNRVEKLVG------- 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NI 153 E +++ T H+ C I++ LEA NI Sbjct: 80 -------------------------------EKSKDIQILTFHSLCNLILR---LEAKNI 105 Query: 154 TS---------HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK-KAFYEILEISNDED 203 F I DE+ KK++E+ L + D+ +E K AF I ISN ++ Sbjct: 106 VELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYLKA--NDDRDETKISAFDAIKFISNAKN 163 Query: 204 IETLISDII 212 E D++ Sbjct: 164 WEKSPEDLL 172 >gi|150389970|ref|YP_001320019.1| UvrD/REP helicase [Alkaliphilus metalliredigens QYMF] gi|149949832|gb|ABR48360.1| UvrD/REP helicase [Alkaliphilus metalliredigens QYMF] Length = 678 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 34 AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81 V A GSGKT ++ +RV L+ + + +P +L +T TKAAA EM +R Sbjct: 24 CMVYAGPGSGKTRVITERVSYLINVGHVNPREILVITFTKAAAEEMKNR 72 >gi|319788629|ref|YP_004148104.1| exodeoxyribonuclease V subunit beta [Pseudoxanthomonas suwonensis 11-1] gi|317467141|gb|ADV28873.1| exodeoxyribonuclease V, beta subunit [Pseudoxanthomonas suwonensis 11-1] Length = 1205 Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 12/127 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS- 93 + A+AG+GKT L V+RL+L A P +L +T T+AA E+ RV + + + ++ Sbjct: 18 IEASAGTGKTFTLATLVVRLVLERALPVERILAVTFTEAATQELRSRVRKRLVLAAEVAA 77 Query: 94 ---------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + L+A++ + + AR L + ++ V TIH FC ++ Sbjct: 78 GTVPADGPGEAQLTAQLLQAHLDASGEEITQVARRLRLAA-DSIDQAAVFTIHGFCARVL 136 Query: 145 QQFPLEA 151 ++ LE+ Sbjct: 137 REHALES 143 >gi|144575418|gb|AAZ53772.2| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae 7448] Length = 753 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 55/189 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AG+GKT +L +++ ++ + A+PS +L LT T AA EM +RV +++ Sbjct: 27 IVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTNKAAEEMRNRVEKLVG------- 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NI 153 E +++ T H+ C I++ LEA NI Sbjct: 80 -------------------------------EKSKDIQILTFHSLCNLILR---LEAKNI 105 Query: 154 TS---------HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK-KAFYEILEISNDED 203 F I DE+ KK++E+ L + D+ +E K AF I ISN ++ Sbjct: 106 VELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYLKA--NDDRDETKISAFDAIKFISNAKN 163 Query: 204 IETLISDII 212 E D++ Sbjct: 164 WEKSPEDLL 172 >gi|88608415|ref|YP_506245.1| UvrD/Rep family helicase [Neorickettsia sennetsu str. Miyayama] gi|88600584|gb|ABD46052.1| helicase, UvrD/Rep family [Neorickettsia sennetsu str. Miyayama] Length = 630 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 I EQ LA + + A AG+GKT LV R+ L+ + AHP+ ++ +T A Sbjct: 13 IMNLNDEQRLAVETVNGPVLILAGAGTGKTKTLVHRIAHLIRSGYAHPNQIMAVTFANKA 72 Query: 75 AAEMSHRVLEII 86 A EM RV EI+ Sbjct: 73 ANEMIQRVNEIV 84 >gi|229495094|ref|ZP_04388840.1| ATP-dependent DNA helicase PcrA [Rhodococcus erythropolis SK121] gi|229318025|gb|EEN83900.1| ATP-dependent DNA helicase PcrA [Rhodococcus erythropolis SK121] Length = 830 Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 40/141 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ LL P +L +T T AAAEM RV ++ Sbjct: 52 IVAGAGSGKTAVLTRRIAYLLAERGVTPGQILAITFTNKAAAEMRERVAALV-------- 103 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 G + N + V T H+ C I++ Q L + Sbjct: 104 -----------GPRAN-------------------AMWVSTFHSSCVRILRAQAALLPGL 133 Query: 154 TSHFAIADEEQSKKLIEEAKK 174 S+F+I D + S++L+ K Sbjct: 134 NSNFSIYDSDDSRRLLTMISK 154 >gi|168334212|ref|ZP_02692415.1| ATP-dependent DNA helicase PcrA [Epulopiscium sp. 'N.t. morphotype B'] Length = 731 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 38/138 (27%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT +L QR+ L+ P +L +T T AAAEM R+ + + +++ Sbjct: 22 AGAGSGKTRVLTQRIANLIENHQVQPWEILAITFTNKAAAEMRERMT------NDVGEDV 75 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 L + + T H+ C I+++F T + Sbjct: 76 LK-------------------------------NMWISTFHSMCVRILRRFGESIGYTKY 104 Query: 157 FAIADEEQSKKLIEEAKK 174 F I D + K I++ K Sbjct: 105 FTIYDSAEQKITIKDVMK 122 >gi|197117725|ref|YP_002138152.1| UvrD superfamily ATP-dependent helicase [Geobacter bemidjiensis Bem] gi|197087085|gb|ACH38356.1| ATP-dependent helicase, UvrD superfamily [Geobacter bemidjiensis Bem] Length = 678 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 2/68 (2%) Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 +S+ EQL A T A V A AGSGKT ++ R+ L+L P +L +T T A Sbjct: 4 LSRLNPEQLAAVKHTEGALLVLAGAGSGKTGVITYRIAHLILDKKVPPDQVLAVTFTNKA 63 Query: 75 AAEMSHRV 82 A EM RV Sbjct: 64 AKEMKERV 71 >gi|78188740|ref|YP_379078.1| exodeoxyribonuclease V, beta subunit [Chlorobium chlorochromatii CaD3] gi|78170939|gb|ABB28035.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Chlorobium chlorochromatii CaD3] Length = 1207 Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 15/126 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + +RLLL P +L +T+T+AA E+ R VLE+ Sbjct: 19 IEASAGTGKTYAIASLYVRLLLEKQLLPEQILVVTYTEAATQELRGRIRSRIREVLEVFE 78 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + SD I + ++ + + D + +AR L+ L + TIH FC ++Q Sbjct: 79 G-AATSDAI----VQRLYDQALEQGDDMVERARMALVQALALFDTAAIFTIHGFCLRVLQ 133 Query: 146 QFPLEA 151 + E+ Sbjct: 134 EHAFES 139 >gi|240950109|ref|ZP_04754404.1| DNA-dependent helicase II [Actinobacillus minor NM305] gi|240295410|gb|EER46179.1| DNA-dependent helicase II [Actinobacillus minor NM305] Length = 731 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 36/137 (26%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 S P + V A AGSGKT +L R+ L+ + N S +L +T T AAAEM R+ Sbjct: 19 SAPIGNYLVLAGAGSGKTRVLTHRIAWLIGIENIPESNILAVTFTNKAAAEMRQRI---- 74 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 ++ + ++ H + G+ V T H+ +++ Sbjct: 75 ------------------------EATLEQSSHNMF-------GMWVGTFHSIANRLLRS 103 Query: 147 FPLEANITSHFAIADEE 163 L+AN+ F I D E Sbjct: 104 HYLDANLPQDFQIMDTE 120 >gi|126649601|ref|ZP_01721842.1| PcrA [Bacillus sp. B14905] gi|126593926|gb|EAZ87849.1| PcrA [Bacillus sp. B14905] Length = 750 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 13 TIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70 T +L++ EQ A T + A AGSGKT +L R+ L++ +PS +L +T Sbjct: 5 TKNLLAGMNPEQERAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLIIEKEVYPSKVLAITF 64 Query: 71 TKAAAAEMSHRVLEII 86 T AA EM R+ I+ Sbjct: 65 TNKAAREMRERIDGIL 80 >gi|119493842|ref|ZP_01624409.1| ATP-dependent DNA helicase PcrA [Lyngbya sp. PCC 8106] gi|119452434|gb|EAW33623.1| ATP-dependent DNA helicase PcrA [Lyngbya sp. PCC 8106] Length = 784 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 88/201 (43%), Gaps = 25/201 (12%) Query: 11 SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 ++T+D +S Q A + V A AGSGKT L R+ LL + HP +L + Sbjct: 2 TQTVDFLSHLNPSQRQAVEHFCGPMLVVAGAGSGKTRALTYRIANLLRTHRVHPENILAV 61 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL--E 126 T T AA E+ RV + I S + + Q +KP + S + L + + Sbjct: 62 TFTNKAAREIKERV-----------EAIFSEQQAQTQYQKPFSALTSPEQTNLRSQVYRS 110 Query: 127 TPGGLKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASI 180 L + T H+ C I++ ++ E +F+I DE ++ L+ K+ + Sbjct: 111 VSKQLWMGTFHSLCARILRYDINKYTDEKGRQWQQNFSIFDESDAQSLV---KQIVTKEL 167 Query: 181 MLDNNE-ELKKAFYEILEISN 200 LD+ + E +K Y+I N Sbjct: 168 NLDDKKFEPRKVRYQISNAKN 188 >gi|312876019|ref|ZP_07736008.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A] gi|311797217|gb|EFR13557.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A] Length = 714 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 V A AGSGKT ++ R+ +L + A+P +L +T T AA EM R+ +++ S Sbjct: 24 VLAGAGSGKTRVITYRIAYILNMGLANPGNILAITFTNKAADEMKERIKRLVSTQS 79 >gi|283768593|ref|ZP_06341505.1| putative ATP-dependent nuclease subunit A [Bulleidia extructa W1219] gi|283104985|gb|EFC06357.1| putative ATP-dependent nuclease subunit A [Bulleidia extructa W1219] Length = 1039 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEM 78 T +QL + + VSA+AG+GKT++L++R+ R++ + +L +T TKAAA+EM Sbjct: 2 TDPQQLAIQERNTNVLVSASAGAGKTYLLIERLAQRIVQDHISLDQILAVTFTKAAASEM 61 Query: 79 SHRV 82 R+ Sbjct: 62 KTRL 65 >gi|224372542|ref|YP_002606914.1| ATP-dependent DNA helicase PcrA [Nautilia profundicola AmH] gi|223589142|gb|ACM92878.1| ATP-dependent DNA helicase PcrA [Nautilia profundicola AmH] Length = 665 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 23/49 (46%), Positives = 27/49 (55%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT + R+ LL PS L LT T AA+EM R L +I Sbjct: 26 AGAGSGKTKTITTRLAYLLSLGIDPSNTLTLTFTNKAASEMRERALRMI 74 >gi|72080737|ref|YP_287795.1| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae 7448] Length = 748 Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 55/189 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AG+GKT +L +++ ++ + A+PS +L LT T AA EM +RV +++ Sbjct: 22 IVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTNKAAEEMRNRVEKLVG------- 74 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NI 153 E +++ T H+ C I++ LEA NI Sbjct: 75 -------------------------------EKSKDIQILTFHSLCNLILR---LEAKNI 100 Query: 154 TS---------HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK-KAFYEILEISNDED 203 F I DE+ KK++E+ L + D+ +E K AF I ISN ++ Sbjct: 101 VELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYLKAN--DDRDETKISAFDAIKFISNAKN 158 Query: 204 IETLISDII 212 E D++ Sbjct: 159 WEKSPEDLL 167 >gi|123446867|ref|XP_001312180.1| UvrD/REP helicase family protein [Trichomonas vaginalis G3] gi|121894018|gb|EAX99250.1| UvrD/REP helicase family protein [Trichomonas vaginalis G3] Length = 727 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 41/141 (29%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 ++ A AGSGKT L+ R+ ++ +P +L +T T+ AA E+ R+ I Sbjct: 26 FIYAGAGSGKTRTLICRIAYMIDQGVNPENILAMTFTRKAADEIRERLKTFIG------- 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P S ++ + T H C I++Q P + Sbjct: 79 --------------PKASSVTTS-----------------TFHQLCLNILKQNPFILGFS 107 Query: 155 SH---FAIADEEQSKKLIEEA 172 + F IAD + +K+I+ A Sbjct: 108 GNDQTFHIADNTEQRKIIKNA 128 >gi|83719885|ref|YP_441989.1| superfamily I DNA/RNA helicase [Burkholderia thailandensis E264] gi|83653710|gb|ABC37773.1| Superfamily I DNA and RNA helicases [Burkholderia thailandensis E264] Length = 920 Score = 43.9 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 6/51 (11%) Query: 38 ANAGSGKTHILVQRVLRLLL------ANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT ++ QRV+RLL A HP ++ T T AAAE+ R+ Sbjct: 25 ACAGSGKTEVVAQRVVRLLQPISVGGAGCHPENIVAFTFTDKAAAELKERI 75 >gi|330832698|ref|YP_004401523.1| ATP-dependent exonuclease subunit A [Streptococcus suis ST3] gi|329306921|gb|AEB81337.1| ATP-dependent exonuclease subunit A [Streptococcus suis ST3] Length = 1217 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 33/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 ++ VSA+AGSGKT ++VQR+L L L T T AA E+ R+ + Sbjct: 41 QNVLVSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFTVKAAGELKERI------EKN 94 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 L++ I AE DM RHL + + + T+ +F + ++ + Sbjct: 95 LNETI--AETM----------DMDLRRHLSAQLADLTKA-DIGTMDSFTQKLVTTYGYSL 141 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 I+ F I L +E +K++L + D + F + LE + L+ + Sbjct: 142 GISPQFRI--------LQDETEKASLKKEVFD------QLFADYLEQDENGAFRKLVRNF 187 Query: 212 ISNR 215 NR Sbjct: 188 SGNR 191 >gi|319789815|ref|YP_004151448.1| UvrD/REP helicase [Thermovibrio ammonificans HB-1] gi|317114317|gb|ADU96807.1| UvrD/REP helicase [Thermovibrio ammonificans HB-1] Length = 958 Score = 43.9 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 82/189 (43%), Gaps = 21/189 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + ANAG+GKT +V R + + ++ T T+AAAA++ RV Sbjct: 5 IGANAGAGKTTEIVSRYVEFIRQKFSVDEVVLTTFTEAAAAQLRDRV------------- 51 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 ++ I+ +D HL +L P + TIH+FC ++++F + + S Sbjct: 52 ----KLALIEEISSCVNDEGTKEHLETQLLYLPTA-PIGTIHSFCFELLRRFGVSKGLIS 106 Query: 156 HFA-IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE--ISNDEDIETLISDII 212 A +A + +L E A +S + + ++E +K I + +E + ++I Sbjct: 107 LEARLASPIEVAELAERAVESAVEEVYSADSEGFRKLLTAIDPNGLEGLLTVERFLKEVI 166 Query: 213 SNRTALKLI 221 +RT + Sbjct: 167 HHRTRFPFV 175 >gi|251778648|ref|ZP_04821568.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082963|gb|EES48853.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 749 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 39/138 (28%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT +L R+ ++ P +L +T T AA EM RV+ +I Sbjct: 26 AGAGSGKTRVLTYRMAHMIEDMGIAPYNILAITFTNKAAKEMKDRVISLIG--------- 76 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 SKA ++ I+ T H+ C I+++ + TS+ Sbjct: 77 ------------------SKAENMWIS-----------TFHSTCVRILRREIDKIGYTSN 107 Query: 157 FAIADEEQSKKLIEEAKK 174 F I D K LI+E K Sbjct: 108 FTIYDTSDQKVLIKECMK 125 >gi|84501254|ref|ZP_00999459.1| helicase IV [Oceanicola batsensis HTCC2597] gi|84390545|gb|EAQ03033.1| helicase IV [Oceanicola batsensis HTCC2597] Length = 894 Score = 43.9 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 26/197 (13%) Query: 7 FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTL 65 +++ +T++ + T ++L + V A AGSGKT ++ + L+ A PS L Sbjct: 114 WKDFFDTVESMPLTPEQRLSVVVDEDATLVLAGAGSGKTSVITAKAAYLVKAGIRKPSEL 173 Query: 66 LCLTHTKAAAAEMSHRV-----LEIITAWSH-LSDEILSAEITKIQGKKP--------NK 111 L L K AA EMS R+ + + H L+ EI I +++G+KP +K Sbjct: 174 LLLAFAKDAATEMSERIEARCGVPVAARTFHALAYEI----IGEVEGEKPPLAPTATDDK 229 Query: 112 SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 + +S + +L I+ T + QT+ + FP E + + + +S+ L Sbjct: 230 AFLSLMKEILRHIVATASEI-AQTVTGWFAGFFDDFPTEWDFNTKHEWYAQIESRNL--- 285 Query: 172 AKKSTLASIMLDNNEEL 188 TL +++ EEL Sbjct: 286 ---RTLQGETVNSFEEL 299 >gi|229113198|ref|ZP_04242693.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-15] gi|228670224|gb|EEL25572.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-15] Length = 719 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ +AN S +L LT T+ AA EM R+ Sbjct: 101 AAAGSGKTRVLASRVGYLMCVANVDASRILVLTFTRKAANEMKQRI 146 >gi|324323717|gb|ADY24761.1| helicase, UvrD/Rep family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 719 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ +AN S +L LT T+ AA EM R+ Sbjct: 101 AAAGSGKTRVLASRVGYLMCVANVDASRILVLTFTRKAANEMKQRI 146 >gi|319782887|ref|YP_004142363.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168775|gb|ADV12313.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 861 Score = 43.9 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 10 HSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 H+ D + EQ LA + T V A AG+GKT +L R+ +L A PS +L Sbjct: 35 HNNAPDYLKGLNPEQRLAVETTEGPVLVLAGAGTGKTRVLTTRIAYILDTKRAWPSEILA 94 Query: 68 LTHTKAAAAEMSHRV 82 +T T AA EM R+ Sbjct: 95 VTFTNKAAREMKQRI 109 >gi|315634341|ref|ZP_07889628.1| exodeoxyribonuclease V beta subunit [Aggregatibacter segnis ATCC 33393] gi|315476931|gb|EFU67676.1| exodeoxyribonuclease V beta subunit [Aggregatibacter segnis ATCC 33393] Length = 1220 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 15/143 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLA---NAHPSTL-----LCLTHTKAAAAEMSHRVLEII- 86 + A+AG+GKT+ + LRLLL N P L L +T T+ A E+ ++ E I Sbjct: 17 IEASAGTGKTYTMGSLYLRLLLQAGENTFPYALNVEQILVVTFTEMATEELKRKIRERIY 76 Query: 87 ------TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 TA+ D + + ++ + +D+ A L + + TIH FC Sbjct: 77 DAKQKLTAYQQTQDSAVFGQDDFLRELVASITDLPLAIQRLTLAEQNMDLAAIYTIHGFC 136 Query: 141 EAIMQQFPLEANITSHFAIADEE 163 ++ Q+ + + + ++ EE Sbjct: 137 RRMLMQYAFNSGVHFNLELSGEE 159 >gi|296272340|ref|YP_003654971.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299] gi|296096514|gb|ADG92464.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299] Length = 680 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%) Query: 22 SEQLLASDPTRSAW--VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 +E+ LA+ + + + A+AG+GKT +V R+ L+ PS ++ LT T AA EM Sbjct: 7 NEEQLAAATCKPGFNLIIASAGTGKTSTIVGRIATLINGGVKPSEIILLTFTNKAAQEMV 66 Query: 80 HRV 82 RV Sbjct: 67 QRV 69 >gi|257459551|ref|ZP_05624660.1| acyl carrier protein [Campylobacter gracilis RM3268] gi|257442976|gb|EEV18110.1| acyl carrier protein [Campylobacter gracilis RM3268] Length = 684 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 7/87 (8%) Query: 14 IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D +++ +EQ A+ P V A+AG+GKT +V R+ LL P +L LT T Sbjct: 10 LDALAKLNTEQYAAATAPAGHNLVIASAGTGKTSTIVARIAHLLNLGTSPRKILLLTFTN 69 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSA 99 AA+EM R+ H +I SA Sbjct: 70 KAASEMIARL------QRHFDKKITSA 90 >gi|89898806|ref|YP_515916.1| ATP-dependent dsDNA/ssDNA exodeoxyribonuclease V beta [Chlamydophila felis Fe/C-56] gi|89332178|dbj|BAE81771.1| ATP-dependent dsDNA/ssDNA exodeoxyribonuclease V beta [Chlamydophila felis Fe/C-56] Length = 1045 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 5/118 (4%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVLE-IITAWSH 91 ++ A+AG+GKT + Q +LR LL + T +L +T T AA E+ R+ + + A S Sbjct: 18 FLEASAGTGKTFTIEQIILRALLEGSVTRTENILAVTFTNAATNELKLRIQDNLKRALSQ 77 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFP 148 L LS + P D+ + + L T + + TIH FC ++Q FP Sbjct: 78 LKSS-LSDPSQPLPPYLPEPCDVKQLYMQIRNALATIDRMAIFTIHGFCNHVLQLHFP 134 >gi|76799128|ref|ZP_00781314.1| exonuclease RexA [Streptococcus agalactiae 18RS21] gi|76585514|gb|EAO62086.1| exonuclease RexA [Streptococcus agalactiae 18RS21] Length = 770 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 19/144 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L LL +L T T AA E+ R+ + I ++ Sbjct: 45 VSASAGSGKTFVMVERILDKLLRGVPIDSLFISTFTVKAAGELKERLEKKI------NES 98 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + SAE + + L L + T+ AF + I+ Q+ I+ Sbjct: 99 LKSAESDDL-------------KQFLTQQLVGIQTADIGTMDAFTQKIVNQYGYTLGISP 145 Query: 156 HFAIADEEQSKKLIEEAKKSTLAS 179 F I ++ + +I+ + L S Sbjct: 146 IFRILQDKNEQDVIKNEVYADLFS 169 >gi|223932475|ref|ZP_03624477.1| recombination helicase AddA [Streptococcus suis 89/1591] gi|302023673|ref|ZP_07248884.1| ATP-dependent exonuclease subunit A [Streptococcus suis 05HAS68] gi|223898929|gb|EEF65288.1| recombination helicase AddA [Streptococcus suis 89/1591] Length = 1217 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 33/184 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 ++ VSA+AGSGKT ++VQR+L L L T T AA E+ R+ + Sbjct: 41 QNVLVSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFTVKAAGELKERI------EKN 94 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 L++ I AE DM RHL + + + T+ +F + ++ + Sbjct: 95 LNETI--AETM----------DMDLRRHLSAQLADLTKA-DIGTMDSFTQKLVTTYGYSL 141 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 I+ F I L +E +K++L + D + F + LE + L+ + Sbjct: 142 GISPQFRI--------LQDETEKASLKKEVFD------QLFADYLEQDENGAFRKLVRNF 187 Query: 212 ISNR 215 NR Sbjct: 188 SGNR 191 >gi|325524957|gb|EGD02885.1| UvrD/REP helicase [Burkholderia sp. TJI49] Length = 696 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138 >gi|298372853|ref|ZP_06982843.1| ATP-dependent DNA helicase PcrA [Bacteroidetes oral taxon 274 str. F0058] gi|298275757|gb|EFI17308.1| ATP-dependent DNA helicase PcrA [Bacteroidetes oral taxon 274 str. F0058] Length = 776 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L ++ L+ S++L LT T AA EM R+++I+ Sbjct: 32 IVAGAGSGKTRVLTYKIAYLIAQGFPASSILALTFTNKAANEMKERIMQIV 82 >gi|219685122|ref|ZP_03539942.1| ATP-dependent DNA helicase PcrA [Borrelia garinii Far04] gi|219673218|gb|EED30237.1| ATP-dependent DNA helicase PcrA [Borrelia garinii Far04] Length = 658 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT ++ R+ LLL +L LT T AA EM R+ +I+ + Sbjct: 29 AGAGSGKTRVVTHRIAYLLLKGIAQKEILALTFTNKAANEMKDRIKKILKS 79 >gi|212637392|ref|YP_002313917.1| DNA-dependent helicase II [Shewanella piezotolerans WP3] gi|212558876|gb|ACJ31330.1| DNA helicase II [Shewanella piezotolerans WP3] Length = 721 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 70/177 (39%), Gaps = 45/177 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P +L +T Sbjct: 4 SSLLDGLNDKQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYAILAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV K+ G +MS+ Sbjct: 62 FTNKAAKEMRERV-------------------EKVAG-----GNMSR------------- 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + + T H +++ EAN+ F I D + +LI K L S+ LD + Sbjct: 85 -MWIGTFHGLAHRLLRTHYKEANLPQSFQILDSDDQLRLI----KRILKSLNLDEKQ 136 >gi|206558483|ref|YP_002229243.1| ATP-dependent DNA helicase Rep [Burkholderia cenocepacia J2315] gi|198034520|emb|CAR50385.1| ATP-dependent DNA helicase Rep [Burkholderia cenocepacia J2315] Length = 695 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 117 PQFSIMDSDDCFGMIQEQLGTT 138 >gi|219684438|ref|ZP_03539382.1| ATP-dependent DNA helicase PcrA [Borrelia garinii PBr] gi|219672427|gb|EED29480.1| ATP-dependent DNA helicase PcrA [Borrelia garinii PBr] Length = 658 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT ++ R+ LLL +L LT T AA EM R+ +I+ + Sbjct: 29 AGAGSGKTRVVTHRIAYLLLKGIAQKEILALTFTNKAANEMKDRIKKILKS 79 >gi|150009169|ref|YP_001303912.1| ATP-dependent helicase [Parabacteroides distasonis ATCC 8503] gi|149937593|gb|ABR44290.1| ATP-dependent helicase [Parabacteroides distasonis ATCC 8503] Length = 1055 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 14/129 (10%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIIT--AWSHL 92 A+AG+GKTH L L LL + P +L +T T A EM R+++ + A Sbjct: 7 ASAGAGKTHKLTGEYLMLLF--SQPGVYRRILAVTFTNKATDEMKTRIVQELYHLASGRA 64 Query: 93 SD--EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 SD ++LS+ + + + +AR +L+ IL + TI F + M+ F E Sbjct: 65 SDYIQLLSSAYSLTE-----RQVREQARKILVAILHDYSAFNISTIDRFFQQTMRAFTRE 119 Query: 151 ANITSHFAI 159 + + I Sbjct: 120 IGLQGGYGI 128 >gi|148379300|ref|YP_001253841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. ATCC 3502] gi|153931399|ref|YP_001383675.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. ATCC 19397] gi|153936519|ref|YP_001387223.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. Hall] gi|148288784|emb|CAL82868.1| putative DNA helicase [Clostridium botulinum A str. ATCC 3502] gi|152927443|gb|ABS32943.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. ATCC 19397] gi|152932433|gb|ABS37932.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum A str. Hall] Length = 855 Score = 43.9 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 44/138 (31%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 ++AG+GKT L R+ ++ N A +LCLT T A EM +++E + Sbjct: 25 SSAGTGKTKTLSMRIGNIIAKNLALGEQILCLTFTNRACKEMKEKIIETV---------- 74 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIHAFC-EAIMQQFPLEANI 153 GK+ GLK V+T H+FC + I ++ +I Sbjct: 75 ---------GKE---------------------GLKVTVKTFHSFCFDVIKKEAKKNTDI 104 Query: 154 TSHFAIADEEQSKKLIEE 171 +S F I DEE +K++I E Sbjct: 105 SSDFTIYDEEDTKEIISE 122 >gi|160900763|ref|YP_001566345.1| UvrD/REP helicase [Delftia acidovorans SPH-1] gi|160366347|gb|ABX37960.1| UvrD/REP helicase [Delftia acidovorans SPH-1] Length = 822 Score = 43.9 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ EQL A + P A + A AGSGKT +L R+ LL A P ++L +T T Sbjct: 21 LLANLNEEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQTGQATPGSILAVTFTNK 80 Query: 74 AAAEMSHRV 82 AA EM R+ Sbjct: 81 AAKEMLARL 89 >gi|325962273|ref|YP_004240179.1| ATP-dependent DNA helicase PcrA [Arthrobacter phenanthrenivorans Sphe3] gi|323468360|gb|ADX72045.1| ATP-dependent DNA helicase PcrA [Arthrobacter phenanthrenivorans Sphe3] Length = 830 Score = 43.9 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 55/140 (39%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ L+ AH +L +T T AAAEM R+ Sbjct: 80 IVAGAGSGKTRVLSNRIAYLIATGRAHHGEILAITFTNKAAAEMRERI------------ 127 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E L KI + + T H+ C I++Q + Sbjct: 128 EALVGGRAKI--------------------------MWISTFHSSCVRILRQEAANVGLK 161 Query: 155 SHFAIADEEQSKKLIEEAKK 174 S+F+I D S +L+ + K Sbjct: 162 SNFSIYDSADSLRLVTQVSK 181 >gi|312127653|ref|YP_003992527.1| uvrd/rep helicase [Caldicellulosiruptor hydrothermalis 108] gi|311777672|gb|ADQ07158.1| UvrD/REP helicase [Caldicellulosiruptor hydrothermalis 108] Length = 714 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 V A AGSGKT ++ R+ +L + A+P +L +T T AA EM R+ +++ S Sbjct: 24 VLAGAGSGKTRVITYRIAYILNMGLANPGNILAITFTNKAADEMKERIKRLVSTQS 79 >gi|134294278|ref|YP_001118013.1| UvrD/REP helicase [Burkholderia vietnamiensis G4] gi|134137435|gb|ABO53178.1| UvrD/REP helicase [Burkholderia vietnamiensis G4] Length = 695 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138 >gi|222055070|ref|YP_002537432.1| UvrD/REP helicase [Geobacter sp. FRC-32] gi|221564359|gb|ACM20331.1| UvrD/REP helicase [Geobacter sp. FRC-32] Length = 678 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 12/98 (12%) Query: 23 EQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSH 80 +QL A T A V A AGSGKT ++ R+ LLL P+ +L +T T AA EM Sbjct: 10 QQLAAVKHTEGALLVLAGAGSGKTGVITYRIAHLLLDKKVPPANILAVTFTNKAAKEMRE 69 Query: 81 RVLE----------IITAWSHLSDEILSAEITKIQGKK 108 RV II+ + L IL +I ++ KK Sbjct: 70 RVDGLVGRAACKGLIISTFHSLGVRILRRDIERLGYKK 107 >gi|289207283|ref|YP_003459349.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix] gi|288942914|gb|ADC70613.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix] Length = 735 Score = 43.9 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + P +LL +T Sbjct: 4 SPLLDSLNPAQREAVAA--PPQPLLVLAGAGSGKTRVLVHRIAWLIGVEGVAPHSLLAVT 61 Query: 70 HTKAAAAEMSHRV 82 T AAAEM R+ Sbjct: 62 FTNKAAAEMRGRI 74 >gi|172059215|ref|YP_001806867.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6] gi|171991732|gb|ACB62651.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6] Length = 695 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138 >gi|111115437|ref|YP_710055.1| rep helicase, single-stranded DNA-dependent ATPase [Borrelia afzelii PKo] gi|216263384|ref|ZP_03435379.1| ATP-dependent DNA helicase PcrA [Borrelia afzelii ACA-1] gi|110890711|gb|ABH01879.1| rep helicase, single-stranded DNA-dependent ATPase [Borrelia afzelii PKo] gi|215980228|gb|EEC21049.1| ATP-dependent DNA helicase PcrA [Borrelia afzelii ACA-1] Length = 659 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT ++ R+ LLL +L LT T AA EM R+ +I+ + Sbjct: 29 AGAGSGKTRVVTHRIAYLLLKGIAQKEILALTFTNKAANEMKDRIKKILKS 79 >gi|107024447|ref|YP_622774.1| UvrD/REP helicase [Burkholderia cenocepacia AU 1054] gi|116688174|ref|YP_833797.1| UvrD/REP helicase [Burkholderia cenocepacia HI2424] gi|105894636|gb|ABF77801.1| UvrD/REP helicase [Burkholderia cenocepacia AU 1054] gi|116646263|gb|ABK06904.1| UvrD/REP helicase [Burkholderia cenocepacia HI2424] Length = 695 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 117 PQFSIMDSDDCFGMIQEQLGTT 138 >gi|195941740|ref|ZP_03087122.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Borrelia burgdorferi 80a] Length = 659 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT ++ R+ LLL +L LT T AA EM R+ +I+ + Sbjct: 30 AGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80 >gi|170731518|ref|YP_001763465.1| UvrD/REP helicase [Burkholderia cenocepacia MC0-3] gi|169814760|gb|ACA89343.1| UvrD/REP helicase [Burkholderia cenocepacia MC0-3] Length = 695 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 117 PQFSIMDSDDCFGMIQEQLGTT 138 >gi|220911705|ref|YP_002487014.1| ATP-dependent DNA helicase PcrA [Arthrobacter chlorophenolicus A6] gi|219858583|gb|ACL38925.1| ATP-dependent DNA helicase PcrA [Arthrobacter chlorophenolicus A6] Length = 837 Score = 43.9 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 39/141 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ L+ AH +L +T T AAAEM R+ Sbjct: 87 IVAGAGSGKTRVLSNRIAYLIATGRAHHGEILAITFTNKAAAEMRERI------------ 134 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E L KI + + T H+ C I++Q + Sbjct: 135 EALVGGRAKI--------------------------MWISTFHSSCVRILRQEAANVGLK 168 Query: 155 SHFAIADEEQSKKLIEEAKKS 175 S+F+I D S +L+ + K+ Sbjct: 169 SNFSIYDAADSLRLVTQVSKA 189 >gi|167587403|ref|ZP_02379791.1| UvrD/REP helicase [Burkholderia ubonensis Bu] Length = 539 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A + P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|194337239|ref|YP_002019033.1| UvrD/REP helicase [Pelodictyon phaeoclathratiforme BU-1] gi|194309716|gb|ACF44416.1| UvrD/REP helicase [Pelodictyon phaeoclathratiforme BU-1] Length = 739 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 T V A AGSGKT ++ R+ L+ P +L LT T AA EM HRV Sbjct: 20 TGPVMVLAGAGSGKTRVITYRIAYLIRNEGVSPQNILALTFTNKAAGEMRHRV 72 >gi|307824211|ref|ZP_07654437.1| UvrD/REP helicase [Methylobacter tundripaludum SV96] gi|307734591|gb|EFO05442.1| UvrD/REP helicase [Methylobacter tundripaludum SV96] Length = 725 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 7/77 (9%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRV---LRLLLANAHPSTLLCLTH 70 ID ++ + + + A P+++ V A AGSGKT +LV R+ +++L +AH ++L +T Sbjct: 7 IDPLNDAQRQAVTA--PSQAMLVLAGAGSGKTRVLVHRIAWQIQVLGVSAH--SILAVTF 62 Query: 71 TKAAAAEMSHRVLEIIT 87 T AA EM R+ E++ Sbjct: 63 TNKAAKEMRGRIEELLN 79 >gi|301163214|emb|CBW22764.1| putative helicase [Bacteroides fragilis 638R] Length = 1057 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 4/125 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + D Sbjct: 9 ASAGSGKTFTLAVEYIKLLIRNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDPD 67 Query: 97 LSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A + +I + + D + A L +L +V+TI +F ++IM+ E ++ Sbjct: 68 SDAYLKRIIAETGHSEDEIRTTAGIALGYMLHDYSRFRVETIDSFFQSIMRNLARELELS 127 Query: 155 SHFAI 159 + I Sbjct: 128 PNLNI 132 >gi|224531919|ref|ZP_03672551.1| ATP-dependent DNA helicase PcrA [Borrelia valaisiana VS116] gi|224511384|gb|EEF81790.1| ATP-dependent DNA helicase PcrA [Borrelia valaisiana VS116] Length = 658 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT ++ R+ LLL +L LT T AA EM R+ +I+ + Sbjct: 29 AGAGSGKTRVVTHRIAHLLLKGIAQKEILALTFTNKAANEMKDRIKKILKS 79 >gi|313681842|ref|YP_004059580.1| uvrd/rep helicase [Sulfuricurvum kujiense DSM 16994] gi|313154702|gb|ADR33380.1| UvrD/REP helicase [Sulfuricurvum kujiense DSM 16994] Length = 692 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 31/56 (55%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A+ P + A+AG+GKT +V R+ L+ N P +L LT T AA EM RV Sbjct: 14 ATAPYGHNLIIASAGTGKTSTIVGRIAYLISQNVKPEEILLLTFTNKAAQEMVERV 69 >gi|253568133|ref|ZP_04845544.1| ATP-dependent helicase [Bacteroides sp. 1_1_6] gi|251842206|gb|EES70286.1| ATP-dependent helicase [Bacteroides sp. 1_1_6] Length = 1057 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + D+ Sbjct: 9 ASAGSGKTFTLAVEYIKLLVLNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDKD 67 Query: 97 LSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A + +I + K+ + A L +L +V+TI +F +++M+ E ++ Sbjct: 68 SEAYLNRIKEETKRTEQEIREAAGIALGYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127 Query: 155 SHFAI 159 + I Sbjct: 128 PNLNI 132 >gi|111220613|ref|YP_711407.1| ATP-dependent DNA helicase [Frankia alni ACN14a] gi|111148145|emb|CAJ59814.1| ATP-dependent DNA helicase [Frankia alni ACN14a] Length = 847 Score = 43.9 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L R+ LL A P +L +T T AAAEM RV Sbjct: 74 VVAGAGSGKTRVLAHRIAYLLAARGVRPGEILAITFTNKAAAEMRERV 121 >gi|15806776|ref|NP_295498.1| DNA helicase II [Deinococcus radiodurans R1] gi|6459549|gb|AAF11329.1|AE002019_2 DNA helicase II [Deinococcus radiodurans R1] Length = 745 Score = 43.9 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL+ Q A+D T A V A AGSGKT L+ R+ L+ HP +L +T T Sbjct: 8 DLLQALNPTQAQAADHFTGPALVIAGAGSGKTRTLIYRIAHLIGHYGVHPGEILAVTFTN 67 Query: 73 AAAAEMSHRVLEII 86 AAAEM R ++ Sbjct: 68 KAAAEMRERAGHLV 81 >gi|237741609|ref|ZP_04572090.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 4_1_13] gi|229429257|gb|EEO39469.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 4_1_13] Length = 735 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 39/145 (26%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85 AS S + A AGSGKT + R+ ++ P ++L +T T AA EM RV ++ Sbjct: 15 ASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVTFTNKAAKEMRERVEDL 74 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + D++KA + T H+F +++ Sbjct: 75 V-------------------------GDIAKA-------------CTISTFHSFGMRLLR 96 Query: 146 QFPLEANITSHFAIADEEQSKKLIE 170 + E S+F I D + K++++ Sbjct: 97 MYAKEVGYNSNFTIYDTDDQKRIVK 121 >gi|221218096|ref|ZP_03589562.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 72a] gi|221192044|gb|EEE18265.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 72a] Length = 659 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT ++ R+ LLL +L LT T AA EM R+ +I+ + Sbjct: 30 AGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80 >gi|196047871|ref|ZP_03115049.1| UvrD/REP helicase [Bacillus cereus 03BB108] gi|196021127|gb|EDX59856.1| UvrD/REP helicase [Bacillus cereus 03BB108] Length = 273 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV ++ HP ++ LT TK AA EM R+ Sbjct: 80 AGAGSGKTSVLTSRVAYMMTEKQIHPGNIMLLTFTKKAAEEMKERI 125 >gi|149181197|ref|ZP_01859696.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus sp. SG-1] gi|148851096|gb|EDL65247.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus sp. SG-1] Length = 743 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 11/92 (11%) Query: 2 IYHNSFQEHSETIDLISQTKSE---------QLLASDPTRSAWVS-ANAGSGKTHILVQR 51 +YHN +H E+ D + E Q+ A ++ A AGSGKT +LV R Sbjct: 21 VYHNENHQHYESEDRFYFQRLEEKGICLNEAQMKAVRHMEGPCLTLAGAGSGKTSVLVSR 80 Query: 52 VLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 LL + + P +L LT +K AA EM RV Sbjct: 81 TGYLLQVKHVPPENILLLTFSKKAAMEMKQRV 112 >gi|42525604|ref|NP_970702.1| ATP-dependent DNA helicase UvrD [Treponema denticola ATCC 35405] gi|41815615|gb|AAS10583.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema denticola ATCC 35405] Length = 1139 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 29/138 (21%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 +++ ++A AGSGKT +L R + ++ ++ LT T+ AAAEM R+ + Sbjct: 24 KNSVIAAGAGSGKTKVLAARYVYFVVEKGVSVEKIIALTFTEKAAAEMHKRIYNELKKID 83 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 H PN + + HL K+ TI +FC I + Sbjct: 84 H-----------------PNAKNAIEKFHL----------AKISTIDSFCNRIARDACRN 116 Query: 151 ANITSHFAIADEEQSKKL 168 I+ F I D +S+KL Sbjct: 117 LGISPDFNI-DNTESEKL 133 >gi|224534767|ref|ZP_03675339.1| ATP-dependent DNA helicase PcrA [Borrelia spielmanii A14S] gi|224514015|gb|EEF84337.1| ATP-dependent DNA helicase PcrA [Borrelia spielmanii A14S] Length = 658 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT ++ R+ LLL +L LT T AA EM R+ +I+ + Sbjct: 29 AGAGSGKTRVVTHRIAYLLLKGIAQKEILALTFTNKAANEMKDRIKKILKS 79 >gi|164687610|ref|ZP_02211638.1| hypothetical protein CLOBAR_01251 [Clostridium bartlettii DSM 16795] gi|164603384|gb|EDQ96849.1| hypothetical protein CLOBAR_01251 [Clostridium bartlettii DSM 16795] Length = 683 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 3/78 (3%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHT 71 ID +++ + E + D V A GSGKT ++ R++ +++ P T +L ++ T Sbjct: 6 NIDKLNENQQEAVKHVDG--PCMVLAGPGSGKTRVITYRIVNMVMNEGIPPTRILAISFT 63 Query: 72 KAAAAEMSHRVLEIITAW 89 KA++ EM +R L I + Sbjct: 64 KASSIEMKNRALSICNDF 81 >gi|312149185|gb|ADQ29256.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi N40] Length = 659 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT ++ R+ LLL +L LT T AA EM R+ +I+ + Sbjct: 30 AGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80 >gi|302392793|ref|YP_003828613.1| ATP-dependent DNA helicase PcrA [Acetohalobium arabaticum DSM 5501] gi|302204870|gb|ADL13548.1| ATP-dependent DNA helicase PcrA [Acetohalobium arabaticum DSM 5501] Length = 707 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 10/79 (12%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII-------- 86 V A AGSGKT +L R+ L+ N P LL +T T AA EM R+ ++I Sbjct: 24 VLAGAGSGKTMVLTHRIAYLIQQCNVEPYNLLAVTFTNKAAEEMRERIEKLIAQDSEDIW 83 Query: 87 -TAWSHLSDEILSAEITKI 104 + + ++ IL EI K+ Sbjct: 84 MSTFHSIAVRILRREINKL 102 >gi|170698717|ref|ZP_02889782.1| UvrD/REP helicase [Burkholderia ambifaria IOP40-10] gi|171321304|ref|ZP_02910265.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5] gi|170136342|gb|EDT04605.1| UvrD/REP helicase [Burkholderia ambifaria IOP40-10] gi|171093411|gb|EDT38595.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5] Length = 695 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138 >gi|225549593|ref|ZP_03770559.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 118a] gi|225369870|gb|EEG99317.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 118a] Length = 659 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT ++ R+ LLL +L LT T AA EM R+ +I+ + Sbjct: 30 AGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80 >gi|224533580|ref|ZP_03674169.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi CA-11.2a] gi|224513253|gb|EEF83615.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi CA-11.2a] Length = 659 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT ++ R+ LLL +L LT T AA EM R+ +I+ + Sbjct: 30 AGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80 >gi|224532709|ref|ZP_03673326.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi WI91-23] gi|224512327|gb|EEF82711.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi WI91-23] Length = 659 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT ++ R+ LLL +L LT T AA EM R+ +I+ + Sbjct: 30 AGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80 >gi|225548716|ref|ZP_03769763.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 94a] gi|225370746|gb|EEH00182.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 94a] Length = 659 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT ++ R+ LLL +L LT T AA EM R+ +I+ + Sbjct: 30 AGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80 >gi|187479029|ref|YP_787053.1| DNA helicase [Bordetella avium 197N] gi|115423615|emb|CAJ50155.1| DNA helicase [Bordetella avium 197N] Length = 685 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L RV +L+ A P +L LT ++ AA EM R ++ Sbjct: 37 VIAGAGSGKTSVLAHRVAQLIRHGADPQRVLLLTFSRRAAQEMDRRAGGVL 87 >gi|15594952|ref|NP_212741.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Borrelia burgdorferi B31] gi|223889056|ref|ZP_03623646.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 64b] gi|2688535|gb|AAC66967.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Borrelia burgdorferi B31] gi|223885482|gb|EEF56582.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 64b] Length = 659 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT ++ R+ LLL +L LT T AA EM R+ +I+ + Sbjct: 30 AGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80 >gi|170718056|ref|YP_001785094.1| DNA-dependent helicase II [Haemophilus somnus 2336] gi|168826185|gb|ACA31556.1| DNA helicase II [Haemophilus somnus 2336] Length = 726 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLT 69 SE ++ +++ + ++A P + V A AGSGKT +L R+ L P S+++ +T Sbjct: 4 SELLNDLNEKQRNAVVA--PLGNYLVLAGAGSGKTRVLTYRIAWLSAVEKIPESSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSH 91 T AA EM HR+ + +SH Sbjct: 62 FTNKAATEMRHRIEATLARYSH 83 >gi|312148323|gb|ADQ30982.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi JD1] Length = 659 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT ++ R+ LLL +L LT T AA EM R+ +I+ + Sbjct: 30 AGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80 >gi|218249903|ref|YP_002375114.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi ZS7] gi|226321913|ref|ZP_03797439.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi Bol26] gi|218165091|gb|ACK75152.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi ZS7] gi|226233102|gb|EEH31855.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi Bol26] Length = 659 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT ++ R+ LLL +L LT T AA EM R+ +I+ + Sbjct: 30 AGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80 >gi|308051416|ref|YP_003914982.1| ATP-dependent DNA helicase UvrD [Ferrimonas balearica DSM 9799] gi|307633606|gb|ADN77908.1| ATP-dependent DNA helicase UvrD [Ferrimonas balearica DSM 9799] Length = 721 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ LL P +L +T T AAAEM HR+ +++ Sbjct: 27 VLAGAGSGKTRVLTHRIAWLLEEQGESPYAILAVTFTNKAAAEMRHRIEDLV 78 >gi|282859649|ref|ZP_06268751.1| putative ATP-dependent helicase PcrA [Prevotella bivia JCVIHMP010] gi|282587567|gb|EFB92770.1| putative ATP-dependent helicase PcrA [Prevotella bivia JCVIHMP010] Length = 839 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 13/106 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI---------- 85 V A AGSGKT +L ++ LL P +L LT T AA EM R+ +I Sbjct: 23 VVAGAGSGKTRVLTYKIAYLLEKGLKPWNILALTFTNKAAREMKERIAKITHSHDTNRLY 82 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPG 129 + + + IL AE I G N + D S +R LL I++ G Sbjct: 83 MGTFHSIFARILRAEAHHI-GYNSNFTIYDESDSRSLLKNIIKAMG 127 >gi|260462130|ref|ZP_05810374.1| UvrD/REP helicase [Mesorhizobium opportunistum WSM2075] gi|259031990|gb|EEW33257.1| UvrD/REP helicase [Mesorhizobium opportunistum WSM2075] Length = 899 Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 D + EQ LA + T V A AG+GKT +L R+ +L A PS +L +T T Sbjct: 40 DYLKGLNPEQRLAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGKAFPSQILAVTFTN 99 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 100 KAAREMKQRI 109 >gi|126662607|ref|ZP_01733606.1| ATP-dependent helicase [Flavobacteria bacterium BAL38] gi|126625986|gb|EAZ96675.1| ATP-dependent helicase [Flavobacteria bacterium BAL38] Length = 1062 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 12/144 (8%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 A+AGSGKT+ L + L++L ++ +L +T T A EM R++ + +S S Sbjct: 10 DASAGSGKTYTLTKEYLKILFLASNDDAYRKILAITFTNKAVEEMKSRIVSSLYEFSIDS 69 Query: 94 DEILSAEITKIQGKKPNKS-----DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + E+ K + S D SKA ++ I+ + TI F +++ F Sbjct: 70 TSDKAMELLKDVSAETKLSIATLKDKSKA--IIKNIIHNYAAFDISTIDKFTHKVIRTFA 127 Query: 149 LEANITSHFAIADEEQSKKLIEEA 172 + N+ +F ++ E S L++EA Sbjct: 128 QDLNLPPNFEVSLETDS--LLQEA 149 >gi|78064806|ref|YP_367575.1| UvrD/REP helicase [Burkholderia sp. 383] gi|77965551|gb|ABB06931.1| UvrD/REP helicase [Burkholderia sp. 383] Length = 695 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138 >gi|299066163|emb|CBJ37346.1| DNA helicase II [Ralstonia solanacearum CMR15] Length = 794 Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 +L++ EQ A + P SA + A AGSGKT +L R+ L+ A PS +L +T T Sbjct: 3 ELLAHLNPEQRAAVTLPDESALILAGAGSGKTRVLTTRIAWLIQSARVSPSGVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM+ R+ Sbjct: 63 KAAKEMNARL 72 >gi|156975569|ref|YP_001446476.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Vibrio harveyi ATCC BAA-1116] gi|156527163|gb|ABU72249.1| hypothetical protein VIBHAR_03301 [Vibrio harveyi ATCC BAA-1116] Length = 1212 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 23/133 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT + LRLLL + +T +L +T T+AA AE+ R+ Sbjct: 23 IEASAGTGKTFTIAGLYLRLLLGHGTANTKHRVPLTVDQILVVTFTEAATAELRDRIRAR 82 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 I A SD ++ + +I+ D +A +L+ V TIH F Sbjct: 83 IHDARIAFARGKSSDPVIQPLLGEIE-------DHKQAAEILLQAERQMDEAAVYTIHGF 135 Query: 140 CEAIMQQFPLEAN 152 C+ ++ Q E+ Sbjct: 136 CQRMLTQNAFESG 148 >gi|254250937|ref|ZP_04944255.1| UvrD/REP helicase [Burkholderia dolosa AUO158] gi|124893546|gb|EAY67426.1| UvrD/REP helicase [Burkholderia dolosa AUO158] Length = 714 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 41 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 89 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 90 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 135 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 136 PQFSIMDSDDCFGMIQEQLGTT 157 >gi|115350193|ref|YP_772032.1| UvrD/REP helicase [Burkholderia ambifaria AMMD] gi|115280181|gb|ABI85698.1| UvrD/REP helicase [Burkholderia ambifaria AMMD] Length = 695 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138 >gi|296268638|ref|YP_003651270.1| ATP-dependent DNA helicase PcrA [Thermobispora bispora DSM 43833] gi|296091425|gb|ADG87377.1| ATP-dependent DNA helicase PcrA [Thermobispora bispora DSM 43833] Length = 786 Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 + A AGSGKT +L R+ LL HP+ +L +T T AA EM RV ++ S L Sbjct: 66 IVAGAGSGKTRVLTHRIAYLLAERRVHPAEILAITFTNKAAREMRDRVDRLVGPRSQL 123 >gi|326203370|ref|ZP_08193235.1| ATP-dependent DNA helicase PcrA [Clostridium papyrosolvens DSM 2782] gi|325986628|gb|EGD47459.1| ATP-dependent DNA helicase PcrA [Clostridium papyrosolvens DSM 2782] Length = 783 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 A AGSGKT +L R+ L+ + +PS +L +T T AA EM R+ +I S+ Sbjct: 26 AGAGSGKTRVLTHRIAYLIEQHGVYPSNILAITFTNKAAREMKERIAGLIGDLSN 80 >gi|227537987|ref|ZP_03968036.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum ATCC 33300] gi|227242063|gb|EEI92078.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum ATCC 33300] Length = 758 Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT ++ RV L+ P +L LT T AA EM R+++++ Sbjct: 24 IVAGAGSGKTRVITYRVAHLIRKGVDPFNILVLTFTNKAAKEMRERIMKVV 74 >gi|189913135|ref|YP_001965023.1| Exodeoxyribonuclease V, beta subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|189913470|ref|YP_001964698.1| Exodeoxyribonuclease V beta chain, UvrD subfamily [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167777811|gb|ABZ96110.1| Exodeoxyribonuclease V, beta subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781538|gb|ABZ99834.1| Exodeoxyribonuclease V beta chain, UvrD subfamily [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 1209 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 58/191 (30%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPST-------LLCLTHTKAAAAEMSHRV-LEII 86 ++ A+AG+GKTH+++Q + ++ + T L LT T+ AA E+ R+ L+I+ Sbjct: 13 FIEASAGTGKTHLIMQMLGDVMTHDVTNHTKENRLLQFLVLTFTEKAAGELKARLKLKIL 72 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + + GK P + H L + + + + TIH FC ++ + Sbjct: 73 ELYEN--------------GKHP------EYYHYLRDLDQ----VTISTIHGFCNMVLTE 108 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL-KKAFYEILEIS-NDEDI 204 +P+E ++ L +NEEL +K FY++ D Sbjct: 109 YPVETQNN-----------------------PNVKLTSNEELIRKTFYDLKRSQWEGRDK 145 Query: 205 ETLISDI-ISN 214 E+L +DI ISN Sbjct: 146 ESLANDILISN 156 >gi|167756539|ref|ZP_02428666.1| hypothetical protein CLORAM_02076 [Clostridium ramosum DSM 1402] gi|237733137|ref|ZP_04563618.1| ATP-dependent DNA helicase [Mollicutes bacterium D7] gi|167702714|gb|EDS17293.1| hypothetical protein CLORAM_02076 [Clostridium ramosum DSM 1402] gi|229383819|gb|EEO33910.1| ATP-dependent DNA helicase [Coprobacillus sp. D7] Length = 714 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 53/135 (39%), Gaps = 39/135 (28%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT ++ R+ L+ P +L +T T AA EM R+ ++ Sbjct: 26 AGAGSGKTRVVTYRIAYLIDEIGVDPRKILAITFTNKAANEMKERITSLL---------- 75 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 H L G V TIH+ C I+++ N S+ Sbjct: 76 --------------------GPHAL--------GSLVCTIHSLCVRILRRHINVINYPSN 107 Query: 157 FAIADEEQSKKLIEE 171 F I DEE K LI++ Sbjct: 108 FMIMDEEDQKALIKK 122 >gi|167587899|ref|ZP_02380287.1| UvrD/REP helicase [Burkholderia ubonensis Bu] Length = 696 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138 >gi|152998439|ref|YP_001343274.1| UvrD/REP helicase [Marinomonas sp. MWYL1] gi|150839363|gb|ABR73339.1| UvrD/REP helicase [Marinomonas sp. MWYL1] Length = 737 Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 41/158 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +D ++ + E + A P +++ V A AGSGKT +LV R+ L+ A P +L+ +T T Sbjct: 7 LDSLNDKQREAVAA--PLQNSLVLAGAGSGKTRVLVHRIAWLMHAYELSPYSLMAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +++ P G+ Sbjct: 65 KAAREMQGRIEQLVGV--------------------------------------PPQGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 V T H +++ +A + +F I D + +LI+ Sbjct: 87 VGTFHGLAHRLLRAHWRDAGLKENFQIMDSDDQLRLIK 124 >gi|51473636|ref|YP_067393.1| DNA helicase II [Rickettsia typhi str. Wilmington] gi|81390099|sp|Q68WT1|UVRD_RICTY RecName: Full=DNA helicase II gi|51459948|gb|AAU03911.1| DNA helicase II [Rickettsia typhi str. Wilmington] Length = 658 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A AG+GKT +L R+ ++ N A P +L +T T AA EMS RV +I + Sbjct: 33 AGAGTGKTKVLTSRIANIIQQNLALPHNILAVTFTNKAAKEMSERVHNLINCYG 86 >gi|294673714|ref|YP_003574330.1| putative ATP-dependent DNA helicase PcrA [Prevotella ruminicola 23] gi|294472187|gb|ADE81576.1| putative ATP-dependent DNA helicase PcrA [Prevotella ruminicola 23] Length = 809 Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 14/129 (10%) Query: 14 IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID++ + Q +A + A V A AGSGKT +L ++ LL P +L LT T Sbjct: 3 IDILRELNDSQRVAVEYCDGASLVIAGAGSGKTRVLTYKIAWLLEQGMKPWQILALTFTN 62 Query: 73 AAAAEMSHRVLEII----------TAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHL 120 AA EM R+ ++ + + IL E KI G N + D + AR L Sbjct: 63 KAAREMKDRIGRLVGEEQARYLQMGTFHSVFARILRVEADKI-GYNANFTIYDQTDARSL 121 Query: 121 LITILETPG 129 + TI++ G Sbjct: 122 VKTIIKEMG 130 >gi|189351901|ref|YP_001947529.1| ATP-dependent DNA helicase [Burkholderia multivorans ATCC 17616] gi|189335923|dbj|BAG44993.1| ATP-dependent DNA helicase [Burkholderia multivorans ATCC 17616] Length = 695 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 117 PQFSIMDSDDCFGMIQEQIGTT 138 >gi|168179984|ref|ZP_02614648.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum NCTC 2916] gi|182669095|gb|EDT81071.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum NCTC 2916] Length = 855 Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 44/138 (31%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 ++AG+GKT L R+ ++ N A +LCLT T A EM +++E + Sbjct: 25 SSAGTGKTKTLSMRIGNIIAKNLALGEQILCLTFTNRACKEMKEKIIETV---------- 74 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIHAFC-EAIMQQFPLEANI 153 GK+ GLK V+T H+FC + I ++ +I Sbjct: 75 ---------GKE---------------------GLKVTVKTFHSFCFDVIKKEAKKNTDI 104 Query: 154 TSHFAIADEEQSKKLIEE 171 +S F I DEE +K++I E Sbjct: 105 SSDFTIYDEEDTKEIISE 122 >gi|229496489|ref|ZP_04390203.1| UvrD/REP helicase domain protein [Porphyromonas endodontalis ATCC 35406] gi|229316386|gb|EEN82305.1| UvrD/REP helicase domain protein [Porphyromonas endodontalis ATCC 35406] Length = 536 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 12/130 (9%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPST----LLCLTHTKAAAAEMSHRVLEIITAWSHL 92 +A+AG+GKT+ L L L L +P +L +T T A EM R++E++ L Sbjct: 8 TASAGAGKTYTLALEYLTLAL--KYPEDKFRHILAMTFTNKATNEMKSRIVEVLY---QL 62 Query: 93 SDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + E + + G++ + S +A+ L +IL +V TI +F + +++ F Sbjct: 63 TTEREPSPLALALGERLDLSPEQITDRAQRTLRSILGDYSSFRVSTIDSFFQEVVRSFAF 122 Query: 150 EANITSHFAI 159 E N ++ + Sbjct: 123 ELNFAGNYKV 132 >gi|161523326|ref|YP_001578338.1| UvrD/REP helicase [Burkholderia multivorans ATCC 17616] gi|160340755|gb|ABX13841.1| UvrD/REP helicase [Burkholderia multivorans ATCC 17616] Length = 721 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 48 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 96 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 97 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 142 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 143 PQFSIMDSDDCFGMIQEQIGTT 164 >gi|254246736|ref|ZP_04940057.1| UvrD/REP helicase [Burkholderia cenocepacia PC184] gi|124871512|gb|EAY63228.1| UvrD/REP helicase [Burkholderia cenocepacia PC184] Length = 775 Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 102 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 150 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 151 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 196 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 197 PQFSIMDSDDCFGMIQEQLGTT 218 >gi|120405823|ref|YP_955652.1| ATP-dependent DNA helicase PcrA [Mycobacterium vanbaalenii PYR-1] gi|119958641|gb|ABM15646.1| ATP-dependent DNA helicase PcrA [Mycobacterium vanbaalenii PYR-1] Length = 775 Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 40/136 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ LL A + +L +T T AAAEM RV+ ++ Sbjct: 37 IVAGAGSGKTAVLTRRIAYLLAARDVGVGQVLAITFTNKAAAEMRERVVSLVG------- 89 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 +AR++ ++ T H+ C I++ Q L + Sbjct: 90 --------------------PRARNMWVS-----------TFHSTCVRILRNQASLLPGL 118 Query: 154 TSHFAIADEEQSKKLI 169 S+F+I D + S++L+ Sbjct: 119 NSNFSIYDADDSRRLL 134 >gi|313204216|ref|YP_004042873.1| uvrd/rep helicase [Paludibacter propionicigenes WB4] gi|312443532|gb|ADQ79888.1| UvrD/REP helicase [Paludibacter propionicigenes WB4] Length = 1086 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 8/155 (5%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 A+AGSGKT+ L Q + LL T +L +T T A EM R+L+ + A S Sbjct: 7 ASAGSGKTYRLTQDYIHLLFDARRERTHRRILAVTFTNKATDEMKTRILKELLALSQGEK 66 Query: 95 EILSAEITKIQGKKPNKSDM-SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 A + I P + +KA+ +L IL + TI F + +++ F + + Sbjct: 67 SDYRAGL--ISKDYPTDEGVNAKAKKILTGILHDYSSFSISTIDRFFQQVIRSFARDIGV 124 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + + E + +E++ + + D N++L Sbjct: 125 HGGYNL--ELDNTATLEQSVDNLFLDLSKDENKQL 157 >gi|299535245|ref|ZP_07048569.1| ATP-dependent DNA helicase pcrA [Lysinibacillus fusiformis ZC1] gi|298729366|gb|EFI69917.1| ATP-dependent DNA helicase pcrA [Lysinibacillus fusiformis ZC1] Length = 750 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 13 TIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70 T +L++ EQ A T + A AGSGKT +L R+ L++ +PS +L +T Sbjct: 5 TKNLLAGMNPEQERAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLVIEKEVYPSKILAITF 64 Query: 71 TKAAAAEMSHRVLEII 86 T AA EM R+ I+ Sbjct: 65 TNKAAREMRDRIDGIL 80 >gi|300772620|ref|ZP_07082490.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum ATCC 33861] gi|300760923|gb|EFK57749.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum ATCC 33861] Length = 758 Score = 43.9 bits (102), Expect = 0.020, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT ++ RV L+ P +L LT T AA EM R+++++ Sbjct: 24 IVAGAGSGKTRVITYRVAHLIRKGVDPFNILVLTFTNKAAKEMRERIMKVV 74 >gi|90415401|ref|ZP_01223335.1| DNA helicase II [marine gamma proteobacterium HTCC2207] gi|90332724|gb|EAS47894.1| DNA helicase II [marine gamma proteobacterium HTCC2207] Length = 723 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +LV R+ +L + N P ++L +T T AA EM R+ E++ Sbjct: 27 VLAGAGSGKTRVLVHRIAWKLQVDNLSPYSILAVTFTNKAAREMRERIDELM 78 >gi|159903624|ref|YP_001550968.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9211] gi|159888800|gb|ABX09014.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9211] Length = 1265 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 10/146 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAE----MSHRVLEIITAWS 90 + A+AG+GKT L VLRLL H + +L ++ T+A+AAE +++R++ + Sbjct: 21 IEASAGTGKTFSLAHLVLRLLTEKQHSINEILVVSFTRASAAEIKARITNRLIFALKGLE 80 Query: 91 HLSDEILSAEITKIQGKKPNK--SDMSKARHLLITILETPGGL---KVQTIHAFCEAIMQ 145 + S E + I ++ + K +D+ + H + +L+ + + TIH FC +Q Sbjct: 81 NPSKEYKNKHIDQVLDEWLKKFINDIQRRMHWVNHLLDALTNIDQADITTIHGFCRRTLQ 140 Query: 146 QFPLEANITSHFAIADEEQSKKLIEE 171 + +E+ E + KKL+ E Sbjct: 141 RDVIESGSAIEPHPIAEGEIKKLVNE 166 >gi|226307919|ref|YP_002767879.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus erythropolis PR4] gi|226187036|dbj|BAH35140.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus erythropolis PR4] Length = 830 Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 40/141 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ LL P +L +T T AAAEM RV ++ Sbjct: 52 IVAGAGSGKTAVLTRRIAYLLAERGVTPGQILAITFTNKAAAEMRERVAALV-------- 103 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 G + N + V T H+ C I++ Q L + Sbjct: 104 -----------GPRAN-------------------AMWVSTFHSSCVRILRAQAALLPGL 133 Query: 154 TSHFAIADEEQSKKLIEEAKK 174 S+F+I D + S++L+ K Sbjct: 134 NSNFSIYDSDDSRRLLTMISK 154 >gi|317011121|gb|ADU84868.1| ATP-dependent DNA helicase [Helicobacter pylori SouthAfrica7] Length = 672 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 5/79 (6%) Query: 19 QTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ + + A+AG+GKT +V R+L LL P +L LT T A++E Sbjct: 6 QLNPEQLKAASALKGHNLIIASAGTGKTSTIVGRILHLLDNGIKPEEILLLTFTNKASSE 65 Query: 78 MSHRVLEIITAWSHLSDEI 96 M RV +S LS +I Sbjct: 66 MIARV----AKYSKLSSKI 80 >gi|145347097|ref|XP_001418014.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578242|gb|ABO96307.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 657 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 P + V A GSGKTH+L+ RV L+ P +LC+T T AA E+ R+ + I Sbjct: 12 PVGATRVLAGPGSGKTHVLIGRVAHLIHELKTPPREILCITFTNKAARELRERLRDKI 69 >gi|154244726|ref|YP_001415684.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] gi|154158811|gb|ABS66027.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] Length = 1143 Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 + A G+GKT LV+RVL LL P+ +L LT + AA E+S R++ Sbjct: 218 LQAGPGTGKTRTLVKRVLSLLADGIDPAAILVLTFSNRAAGELSERLI 265 >gi|332176248|gb|AEE25501.1| UvrD/REP helicase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1108 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 27/144 (18%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 S V A AGSGKT V+ L LL +P + L +T T A +E RV+ + Sbjct: 16 SKLVKAPAGSGKTTESVKYFLNSLLDCKYPESTLFMTFTNQATSEFRERVISYLRI---- 71 Query: 93 SDEILSAEITKIQGKKPNKS----DM--------SKARHLLITILETPGGLKVQTIHAFC 140 Q P KS DM + + L +L P L+++TI A C Sbjct: 72 -----------AQSNTPPKSAHEMDMYSLAKKVLQRDKELGWGLLSNPNRLEIKTIDALC 120 Query: 141 EAIMQQFPLEANITSHFAIADEEQ 164 I+ PL + + + +++ Q Sbjct: 121 ANIVASSPLGSEMGAVGKVSERPQ 144 >gi|225552476|ref|ZP_03773416.1| ATP-dependent DNA helicase PcrA [Borrelia sp. SV1] gi|225371474|gb|EEH00904.1| ATP-dependent DNA helicase PcrA [Borrelia sp. SV1] Length = 659 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT ++ R+ LLL +L LT T AA EM R+ +I+ + Sbjct: 30 AGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80 >gi|113460642|ref|YP_718708.1| DNA-dependent helicase II [Haemophilus somnus 129PT] gi|112822685|gb|ABI24774.1| ATP-dependent DNA helicase UvrD [Haemophilus somnus 129PT] Length = 726 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLT 69 SE ++ +++ + ++A P + V A AGSGKT +L R+ L P S+++ +T Sbjct: 4 SELLNDLNEKQRNAVVA--PLGNYLVLAGAGSGKTRVLTYRIAWLSAVEKIPESSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSH 91 T AA EM HR+ + +SH Sbjct: 62 FTNKAAMEMRHRIEATLARYSH 83 >gi|319899138|ref|YP_004159231.1| DNA helicase II [Bartonella clarridgeiae 73] gi|319403102|emb|CBI76660.1| DNA helicase II [Bartonella clarridgeiae 73] Length = 817 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L L AHP +L +T T +A EM R+ E+I Sbjct: 64 VLAGAGTGKTRVLTTRISHILHLGLAHPKQILAVTFTNKSAHEMKMRIGELI 115 >gi|302871914|ref|YP_003840550.1| UvrD/REP helicase [Caldicellulosiruptor obsidiansis OB47] gi|302574773|gb|ADL42564.1| UvrD/REP helicase [Caldicellulosiruptor obsidiansis OB47] Length = 714 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 V A AGSGKT ++ R+ +L + A+P +L +T T AA EM R+ ++ S Sbjct: 24 VLAGAGSGKTRVITYRIAYILNMGLANPGNILAITFTNKAADEMKERIKRLVNTQS 79 >gi|218130936|ref|ZP_03459740.1| hypothetical protein BACEGG_02538 [Bacteroides eggerthii DSM 20697] gi|217987280|gb|EEC53611.1| hypothetical protein BACEGG_02538 [Bacteroides eggerthii DSM 20697] Length = 1087 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 9/129 (6%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95 A+AGSGKT L ++LL+ N +L +T T A AEM R+L ++ W D Sbjct: 8 ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILTQLYGIWKE--DP 65 Query: 96 ILSAEITKIQ---GKKP--NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 A + +I+ P +K +A L +L +V+TI +F +++M+ E Sbjct: 66 ASDAYLKRIKEDLASSPLSDKELRRRAGMALQYMLHDYSRFRVETIDSFFQSVMRNLARE 125 Query: 151 ANITSHFAI 159 ++ + I Sbjct: 126 LELSPNLNI 134 >gi|51598860|ref|YP_073048.1| rep helicase, single-stranded DNA-dependent ATPase [Borrelia garinii PBi] gi|51573431|gb|AAU07456.1| rep helicase, single-stranded DNA-dependent ATPase [Borrelia garinii PBi] Length = 658 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 28/49 (57%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT ++ R+ LLL +L LT T AA EM R+ +I+ Sbjct: 29 AGAGSGKTRVVTHRIAYLLLKGIAQKEILALTFTNKAANEMKDRIKKIL 77 >gi|68249734|ref|YP_248846.1| DNA-dependent helicase II [Haemophilus influenzae 86-028NP] gi|68057933|gb|AAX88186.1| DNA helicase II [Haemophilus influenzae 86-028NP] Length = 727 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + + + A P + V A AGSGKT +L R+ L+ + N +++ +T Sbjct: 5 SELLDGLNDKQRKAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 62 Query: 70 HTKAAAAEMSHRV 82 T AAAEM HR+ Sbjct: 63 FTNKAAAEMRHRI 75 >gi|330990129|ref|ZP_08314109.1| DNA helicase II [Gluconacetobacter sp. SXCC-1] gi|329762817|gb|EGG79281.1| DNA helicase II [Gluconacetobacter sp. SXCC-1] Length = 668 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 59/152 (38%), Gaps = 39/152 (25%) Query: 36 VSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AG+GKT LV V+ R+ N PS +L +T T AA EM R+ + + A Sbjct: 29 VLAGAGTGKTRTLVAGVVDRIGRRNIAPSRILAVTFTNRAAEEMRSRIADAVGA------ 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 PG + T HA ++ P A + Sbjct: 83 ------------------------------DRAPG--WIGTFHAHGRRQLRTDPDIALLR 110 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 F IAD E S++++ ++ +A LD + Sbjct: 111 DGFGIADAEDSRRIVRRLLQAAMADGALDAQD 142 >gi|303231497|ref|ZP_07318227.1| ATP-dependent DNA helicase PcrA [Veillonella atypica ACS-049-V-Sch6] gi|302513840|gb|EFL55852.1| ATP-dependent DNA helicase PcrA [Veillonella atypica ACS-049-V-Sch6] Length = 729 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 26/45 (57%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL +P +L +T T AA EM RV Sbjct: 27 AGAGSGKTKVLTVRIAYLLAQGVNPYEILAITFTNKAAKEMKSRV 71 >gi|289705452|ref|ZP_06501846.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58] gi|289557837|gb|EFD51134.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58] Length = 963 Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ LL A P +L +T T AAAEM RV +I Sbjct: 83 IVAGAGSGKTRVLTHRIAWLLATGRARPHEILAITFTNKAAAEMRERVAGLI 134 >gi|289705920|ref|ZP_06502298.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58] gi|289557366|gb|EFD50679.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58] Length = 962 Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ LL A P +L +T T AAAEM RV +I Sbjct: 83 IVAGAGSGKTRVLTHRIAWLLATGRARPHEILAITFTNKAAAEMRERVAGLI 134 >gi|224539625|ref|ZP_03680164.1| hypothetical protein BACCELL_04533 [Bacteroides cellulosilyticus DSM 14838] gi|224518716|gb|EEF87821.1| hypothetical protein BACCELL_04533 [Bacteroides cellulosilyticus DSM 14838] Length = 916 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 9/129 (6%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA-WSHLSDE 95 A+AGSGKT L ++ L+ N +L +T T A AEM R+L+ + W LSD Sbjct: 8 ASAGSGKTFTLAVEYIKHLILNPRAYRQILAVTFTNKATAEMKERILQQLYGIW--LSDP 65 Query: 96 ILSAEITKI----QGKKPNKSDMSKARHL-LITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + +I + K + SD+ +A L +L +V+TI +F +++M+ E Sbjct: 66 ASEPYLNRIREDLRQKNLSDSDIRRAAGTALQYMLHDYSRFRVETIDSFFQSVMRNLARE 125 Query: 151 ANITSHFAI 159 ++ + I Sbjct: 126 LELSPNLNI 134 >gi|170017499|ref|YP_001728418.1| ATP-dependent exoDNAse beta subunit [Leuconostoc citreum KM20] gi|251764532|sp|B1MZM2|ADDA_LEUCK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|169804356|gb|ACA82974.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Leuconostoc citreum KM20] Length = 1236 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V+A+AGSGKT +L++R+++ +L+ L +T T AAA EM R LEI Sbjct: 22 VAASAGSGKTTVLIERLIQKILSGISVENFLIVTFTNAAAKEMRER-LEI 70 >gi|327398224|ref|YP_004339093.1| UvrD/REP helicase [Hippea maritima DSM 10411] gi|327180853|gb|AEA33034.1| UvrD/REP helicase [Hippea maritima DSM 10411] Length = 1025 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 35/148 (23%) Query: 36 VSANAGSGKTHILVQRVLRLL--------------LANAHPST---------LLCLTHTK 72 + A+AGSGKT+ L +R L +L + T ++ +T T Sbjct: 14 IEASAGSGKTYRLAERFLLMLTEYLKSKATLKSLKFCGGNQETCQTPTSIDSIIAITFTN 73 Query: 73 AAAAEMSHRVLEIITAWSHL-SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM RV+ + + + SD + + D + LL+ I+E Sbjct: 74 KAAAEMKERVISFLKCLAGIKSDNVPDVGL-----------DKDSSFKLLVEIVEKFSDF 122 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAI 159 + TI +F I++ F + NI + I Sbjct: 123 HITTIDSFMNRILKAFAADLNIHPDYEI 150 >gi|221214244|ref|ZP_03587216.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD1] gi|221165899|gb|EED98373.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD1] Length = 745 Score = 43.9 bits (102), Expect = 0.021, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 72 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------S 120 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 121 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 166 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 167 PQFSIMDSDDCFGMIQEQIGTT 188 >gi|162455882|ref|YP_001618249.1| ATP-dependent DNA helicase [Sorangium cellulosum 'So ce 56'] gi|161166464|emb|CAN97769.1| ATP-dependent DNA helicase [Sorangium cellulosum 'So ce 56'] Length = 685 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 32/53 (60%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++ R+ RLL ++L +T T AAAEM RV +++ + Sbjct: 3 VLAGAGSGKTRVVTTRIARLLDRGIPARSMLAMTFTNKAAAEMHERVGKLVGS 55 >gi|304312501|ref|YP_003812099.1| ATP-dependent exoDNAse (exonuclease V) β-subunit (contains helicaseand exonuclease domains) [gamma proteobacterium HdN1] gi|301798234|emb|CBL46456.1| ATP-dependent exoDNAse (exonuclease V) β-subunit (contains helicaseand exonuclease domains) [gamma proteobacterium HdN1] Length = 1272 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 24/167 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-------PSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A+AG+GKT + LRL+L + P +L +T T+AAA E+ R+ + Sbjct: 26 IEASAGTGKTFTIAALYLRLILGHQSTLGRPLTPRDILVVTFTQAAAEELRGRIRARLYE 85 Query: 89 WSHL-------SDEILSA--EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + S+ IL A + + QG + +A +LL E + TIHA+ Sbjct: 86 GAQAMRGVELPSESILCALYQEYEAQGMR------ERAGYLLQQAAENMDEAAIYTIHAW 139 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 C+ ++QQ + + F ++ K L+E + S E Sbjct: 140 CQQVLQQHAFASGAS--FGKTLQQDEKVLLEVCVRDYWRSFFYSQGE 184 >gi|260887265|ref|ZP_05898528.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC 35185] gi|260863327|gb|EEX77827.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC 35185] Length = 766 Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 23/51 (45%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ LL P ++L +T T AAAEM RV +I Sbjct: 35 IMAGAGSGKTKVLTCRIANLLAHGVPPYSILAITFTNKAAAEMRERVDRMI 85 >gi|260220810|emb|CBA28747.1| DNA helicase II [Curvibacter putative symbiont of Hydra magnipapillata] Length = 872 Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats. Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 4/81 (4%) Query: 5 NSFQEHSETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-- 61 +SF T L+ EQL A + P A + A AGSGKT +L R+ LL N + Sbjct: 59 HSFAAAGSTPPLLHNLNPEQLAAVTLPAEHALILAGAGSGKTRVLTTRI-AWLLQNGYVS 117 Query: 62 PSTLLCLTHTKAAAAEMSHRV 82 P +L +T T AA EM R+ Sbjct: 118 PGGILAVTFTNKAAKEMMTRL 138 >gi|157156759|ref|YP_001464364.1| UvrD family helicase [Escherichia coli E24377A] gi|157078789|gb|ABV18497.1| helicase, UvrD family [Escherichia coli E24377A] Length = 630 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A+AGSGKT +L +RV R +L N ++ LT T AA EMS R+ Sbjct: 21 VLASAGSGKTRVLTERV-RYILNNTKRDAVIALTFTNKAAEEMSSRL 66 >gi|15674822|ref|NP_268996.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes M1 GAS] gi|13621954|gb|AAK33717.1| putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes M1 GAS] Length = 1210 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 19/151 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L +L L T T AA E+ R+ + L + Sbjct: 46 VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 99 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 I A+ T Q K L L++ + T+ AF + ++ ++ I+S Sbjct: 100 I--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISS 146 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 F I ++ + ++++ S L + ++ E Sbjct: 147 QFRIMQDKAEQDVLKQEVFSKLFNEFMNQKE 177 >gi|121999202|ref|YP_001003989.1| UvrD/REP helicase [Halorhodospira halophila SL1] gi|121590607|gb|ABM63187.1| ATP-dependent DNA helicase UvrD [Halorhodospira halophila SL1] Length = 725 Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 P A V A AGSGKT +L +R L+ + A P +L +T T AA EM R+ E++ Sbjct: 21 PPGRALVLAGAGSGKTRVLTRRAAYLVQVEGASPFAILAVTFTNKAAGEMRGRIGELL 78 >gi|325959294|ref|YP_004290760.1| UvrD/REP helicase [Methanobacterium sp. AL-21] gi|325330726|gb|ADZ09788.1| UvrD/REP helicase [Methanobacterium sp. AL-21] Length = 786 Score = 43.5 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 6/89 (6%) Query: 1 MIYHNSFQEH-----SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL 55 MI N F++ + I LI + +++ +S ++ A GSGKT ++V ++L+ Sbjct: 1 MINLNMFEQLVVKNLNRDIRLIVNPDQNKAISAPTDQSQFIVAGPGSGKTTVMVLKILKF 60 Query: 56 L-LANAHPSTLLCLTHTKAAAAEMSHRVL 83 + + + +P +L T T+ AAAE+ R+L Sbjct: 61 IYVDDVNPGNILATTFTRKAAAELRSRIL 89 >gi|283769206|ref|ZP_06342110.1| putative ATP-dependent helicase PcrA [Bulleidia extructa W1219] gi|283104182|gb|EFC05561.1| putative ATP-dependent helicase PcrA [Bulleidia extructa W1219] Length = 710 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 55/140 (39%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ PS +L +T T AA EM RVL ++ Sbjct: 24 VIAGAGSGKTRVLTMRIAYLMEEKKVWPSKILAITFTNKAAREMETRVLSLM-------- 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 K ++SK V TIH+ C I++Q Sbjct: 76 ----------------KEEVSKP--------------TVCTIHSLCVRILRQEIEAMGYP 105 Query: 155 SHFAIADEEQSKKLIEEAKK 174 F I D E K +++E K Sbjct: 106 KSFTILDVEDQKAILKEYYK 125 >gi|313893297|ref|ZP_07826872.1| ATP-dependent DNA helicase PcrA [Veillonella sp. oral taxon 158 str. F0412] gi|313442193|gb|EFR60610.1| ATP-dependent DNA helicase PcrA [Veillonella sp. oral taxon 158 str. F0412] Length = 729 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 26/45 (57%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL +P +L +T T AA EM RV Sbjct: 27 AGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFTNKAAKEMKSRV 71 >gi|254483191|ref|ZP_05096424.1| UvrD/REP helicase domain protein [marine gamma proteobacterium HTCC2148] gi|214036562|gb|EEB77236.1| UvrD/REP helicase domain protein [marine gamma proteobacterium HTCC2148] Length = 717 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 V A AGSGKT +LV R+ L+ A P ++L +T T AA EM +R+ E++ SH Sbjct: 27 VLAGAGSGKTRVLVHRIAWLIRAEEFSPWSILAVTFTNKAAKEMRNRIEEMLQIPSH 83 >gi|330838978|ref|YP_004413558.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC 35185] gi|329746742|gb|AEC00099.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC 35185] Length = 755 Score = 43.5 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 23/51 (45%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ LL P ++L +T T AAAEM RV +I Sbjct: 24 IMAGAGSGKTKVLTCRIANLLAHGVPPYSILAITFTNKAAAEMRERVDRMI 74 >gi|53804812|ref|YP_113512.1| DNA-dependent helicase II [Methylococcus capsulatus str. Bath] gi|53758573|gb|AAU92864.1| DNA helicase II [Methylococcus capsulatus str. Bath] Length = 726 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 P RS V A AGSGKT +L+ R+ LL A P +L +T T AA EM R+ Sbjct: 21 PDRSLLVLAGAGSGKTRVLIHRIAWLLRAEGVSPHAILAVTFTNKAANEMKARL 74 >gi|13471509|ref|NP_103075.1| DNA helicase II [Mesorhizobium loti MAFF303099] gi|14022251|dbj|BAB48861.1| DNA helicase II [Mesorhizobium loti MAFF303099] Length = 817 Score = 43.5 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 D + EQ LA + T V A AG+GKT +L R+ +L A PS +L +T T Sbjct: 12 DYLKGLNPEQRLAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGKAFPSQILAVTFTN 71 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 72 KAAREMKQRI 81 >gi|303326806|ref|ZP_07357248.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp. 3_1_syn3] gi|302862794|gb|EFL85726.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp. 3_1_syn3] Length = 1081 Score = 43.5 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 62/155 (40%), Gaps = 34/155 (21%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPS--------------------TLLCLTH 70 +R V A+AGSGKT+ L + L L+ H S +L +T Sbjct: 2 SRLCQVKASAGSGKTYELTRCFLLRLMECGHASGVAASPACALAPEGRQCGWGDILAVTF 61 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAAEM RV+ HL L A I D +AR + I+ Sbjct: 62 TNAAAAEMRDRVIR------HLKSAALGARAEDI------PLDADEARRWVDVIMRDLSA 109 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHF--AIADEE 163 L ++TI + I++ LE N+ F A EE Sbjct: 110 LNIRTIDSLLHLIVRAAALELNLHPDFQPVFATEE 144 >gi|303228942|ref|ZP_07315752.1| ATP-dependent DNA helicase PcrA [Veillonella atypica ACS-134-V-Col7a] gi|302516356|gb|EFL58288.1| ATP-dependent DNA helicase PcrA [Veillonella atypica ACS-134-V-Col7a] Length = 729 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 26/45 (57%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL +P +L +T T AA EM RV Sbjct: 27 AGAGSGKTKVLTVRIAYLLAQGVNPYEILAITFTNKAAKEMKSRV 71 >gi|209521655|ref|ZP_03270348.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. H160] gi|209497914|gb|EDZ98076.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. H160] Length = 1239 Score = 43.5 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 7/140 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSH 91 + A+AG+GKT + +RLLL N + +L +T TKAA AE+ R+ L + Sbjct: 28 IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRGRLAELHRAIE 87 Query: 92 LSDEILSAEITKI---QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + D+ I ++ N + A ++ L T + TIHAFC+ +Q+ P Sbjct: 88 MDDDGGDPFIRRLFETTLAPQNGIEREAALKVVRRALRTFDQAAIHTIHAFCQRALQEAP 147 Query: 149 LEANITSHFAIADEEQSKKL 168 A + F + ++ S + Sbjct: 148 FAAAMPFVFEMEADDASLRF 167 >gi|229542654|ref|ZP_04431714.1| UvrD/REP helicase [Bacillus coagulans 36D1] gi|229327074|gb|EEN92749.1| UvrD/REP helicase [Bacillus coagulans 36D1] Length = 232 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L +RV L++ +P +L +T T AA EM R+ I+ Sbjct: 31 AGAGSGKTRVLTRRVAYLMVEKGVNPYNILAITFTNKAAREMKDRIAGIMGG 82 >gi|329770497|ref|ZP_08261875.1| hypothetical protein HMPREF0433_01639 [Gemella sanguinis M325] gi|328836246|gb|EGF85915.1| hypothetical protein HMPREF0433_01639 [Gemella sanguinis M325] Length = 728 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 14 IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71 ++L+ QL A T A V A AGSGKT +L R+ L+ N S +L +T T Sbjct: 1 MNLVQNMNENQLKAILKTEGAVMVIAGAGSGKTRVLTNRIAYLISEKNVLESNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWS 90 AA EM R+ ++ S Sbjct: 61 NKAAKEMKERIYSLVGETS 79 >gi|319939427|ref|ZP_08013787.1| ATP-dependent helicase/nuclease subunit A [Streptococcus anginosus 1_2_62CV] gi|319811413|gb|EFW07708.1| ATP-dependent helicase/nuclease subunit A [Streptococcus anginosus 1_2_62CV] Length = 1226 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLSD 94 VSA+AGSGKT ++VQR++ +L L T T AA+E+ R+ E+ A D Sbjct: 45 VSASAGSGKTFVMVQRIIDQILRGVRIDQLFISTFTVKAASELKERLEKELSKALKATGD 104 Query: 95 EILSAEITKIQGKKPN 110 E L + + PN Sbjct: 105 EELKQHLAQQLADIPN 120 >gi|269798061|ref|YP_003311961.1| ATP-dependent DNA helicase PcrA [Veillonella parvula DSM 2008] gi|282850288|ref|ZP_06259667.1| ATP-dependent DNA helicase PcrA [Veillonella parvula ATCC 17745] gi|269094690|gb|ACZ24681.1| ATP-dependent DNA helicase PcrA [Veillonella parvula DSM 2008] gi|282579781|gb|EFB85185.1| ATP-dependent DNA helicase PcrA [Veillonella parvula ATCC 17745] Length = 729 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 26/45 (57%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL +P +L +T T AA EM RV Sbjct: 27 AGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFTNKAAKEMKSRV 71 >gi|160893045|ref|ZP_02073833.1| hypothetical protein CLOL250_00583 [Clostridium sp. L2-50] gi|156865128|gb|EDO58559.1| hypothetical protein CLOL250_00583 [Clostridium sp. L2-50] Length = 781 Score = 43.5 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 67/169 (39%), Gaps = 45/169 (26%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT ++ RV L+ +P +L +T T AAAEM RV I+ Sbjct: 21 ILAGAGSGKTRVITHRVAYLMDEIGVNPYNILAITFTNKAAAEMRDRVNNIVG------- 73 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E + V T H+ C I+++F Sbjct: 74 -------------------------------EGAERVWVSTFHSLCVRILRRFSDRLGYA 102 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++F I D + K A K+ L + +D + +K F + EISN ++ Sbjct: 103 TNFNIYDSDDQK----SAVKNILKELKIDPKKYPEKMF--MAEISNAKE 145 >gi|33239787|ref|NP_874729.1| superfamily I DNA/RNA helicase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237313|gb|AAP99381.1| Superfamily I DNA/RNA helicase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 807 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 22/146 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+ PS +L +T T AA EM R LEI Sbjct: 28 VVAGAGSGKTRALTHRIAHLISEYKVEPSEILAVTFTNKAAREMKDR-LEI--------- 77 Query: 95 EILSAEITKIQGKKPNKS-DMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQQFPLEAN 152 +L+ ++ KI+ +P + +S L I E + + T HA ++ +F +E Sbjct: 78 -LLAQKLAKIEFGQPFSTLKISIQSELRTRIYREVIKEIWIGTFHALFARLL-RFDIEKY 135 Query: 153 I-------TSHFAIADEEQSKKLIEE 171 + T HF+I DE+ + LI+E Sbjct: 136 VDKEGLKWTRHFSIYDEKDALSLIKE 161 >gi|17549495|ref|NP_522835.1| ATP-dependent DNA helicase II protein [Ralstonia solanacearum GMI1000] gi|17431748|emb|CAD18427.1| probable atp-dependent dna helicase II protein [Ralstonia solanacearum GMI1000] Length = 710 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 31/170 (18%) Query: 9 EHSETIDLISQTKSEQLLA-------SDPTRSA--WVSANAGSGKTHILVQRVLRLLLAN 59 E + D ++Q +Q LA +D ++ V A AGSGKTH L RV L+ Sbjct: 9 ETAPAPDYLAQLNDQQRLAVEFGISGADAAQTGPLLVLAGAGSGKTHTLGWRVAHLVANG 68 Query: 60 AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119 A P +L LT ++ AA+E+S R ++ +QG +S A Sbjct: 69 ADPQRILLLTFSRRAASELSSRAGHLLA--------------RALQGSAGARSAAGTAYR 114 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T L G T H +++++ + F I D + L+ Sbjct: 115 ---TALPWAG-----TFHGIGARLLREYAERIGLAPDFTIHDRSDAADLL 156 >gi|53690303|ref|ZP_00346176.1| COG0210: Superfamily I DNA and RNA helicases [Bifidobacterium longum DJO10A] Length = 454 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ +L A PS +L +T T AAAEM R+ +I Sbjct: 36 IGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAAEMRERLGSLI 87 >gi|332109888|gb|EGJ10516.1| ATP-dependent DNA helicase UvrD [Rubrivivax benzoatilyticus JA2] Length = 784 Score = 43.5 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 10 HSETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 H + L+ EQL A + P A + A AGSGKT +L R+ LL N P +L Sbjct: 2 HLQDAQLLRNLNPEQLAAVTLPAVPALILAGAGSGKTRVLTTRIAWLLATNQVSPGGVLA 61 Query: 68 LTHTKAAAAEMSHRV 82 +T T AA EM R+ Sbjct: 62 VTFTNKAAKEMLTRL 76 >gi|288802867|ref|ZP_06408304.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18] gi|288334684|gb|EFC73122.1| putative ATP-dependent DNA helicase [Prevotella melaninogenica D18] Length = 896 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 41/150 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A+ G GKTHIL +R+ +LCLT T AA EM++R+ +++ Sbjct: 27 VLASPGCGKTHILAERIRYARERGVKYEDMLCLTFTNRAAREMTNRIQKVVGG------- 79 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 D S+ L V +H FC + + + I + Sbjct: 80 -----------------DFSE--------------LMVGNVHRFCSKFLFE---QGRIPA 105 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 AI D+E++ +I + + + D N Sbjct: 106 DSAIIDDEEAVSIIADYRNEDEEGVTRDFN 135 >gi|251764601|sp|Q9A0H3|ADDA_STRP1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA Length = 1222 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 19/151 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L +L L T T AA E+ R+ + L + Sbjct: 58 VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 I A+ T Q K L L++ + T+ AF + ++ ++ I+S Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISS 158 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 F I ++ + ++++ S L + ++ E Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFNEFMNQKE 189 >gi|325696015|gb|EGD37906.1| exonuclease RexA [Streptococcus sanguinis SK160] Length = 1224 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 37/182 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++VQR++ +L S L T T AA E+ R+ L Sbjct: 45 VSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKERL------EKELGQA 98 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + AE +++ +HL + + P + T+ AF + ++ ++ + Sbjct: 99 LKEAESPELK------------QHLAQQLADLPNA-DIGTMDAFTQKVLSRYGYLLGLAP 145 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215 +F I +S ++L N + F ++ + D + + L S ++ N Sbjct: 146 NFRIL-------------QSASEQLILQN-----EVFSQVFDRYYDSERQALFSRLVKNF 187 Query: 216 TA 217 T Sbjct: 188 TG 189 >gi|303240584|ref|ZP_07327099.1| ATP-dependent DNA helicase PcrA [Acetivibrio cellulolyticus CD2] gi|302591821|gb|EFL61554.1| ATP-dependent DNA helicase PcrA [Acetivibrio cellulolyticus CD2] Length = 739 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ L+ +PS++L +T T AA EM R+ +++ Sbjct: 26 AGAGSGKTRVLTNRIAYLIKEKGVYPSSILAITFTNKAAKEMRERIDKLV 75 >gi|294793798|ref|ZP_06758935.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 3_1_44] gi|294455368|gb|EFG23740.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 3_1_44] Length = 729 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 26/45 (57%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL +P +L +T T AA EM RV Sbjct: 27 AGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFTNKAAKEMKSRV 71 >gi|237785085|ref|YP_002905790.1| putative ATP-dependent DNA helicase II [Corynebacterium kroppenstedtii DSM 44385] gi|237757997|gb|ACR17247.1| putative ATP-dependent DNA helicase II [Corynebacterium kroppenstedtii DSM 44385] Length = 870 Score = 43.5 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 81/191 (42%), Gaps = 29/191 (15%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII-------- 86 V A AGSGKT +L +R+ L+ + P ++ +T T AA EM RV ++I Sbjct: 41 VVAGAGSGKTAVLTRRIAYLIGVRGVAPWNIVAITFTNKAATEMKERVADLIGPIAERMW 100 Query: 87 -TAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPG-GLKVQTIHAFCEA 142 + + + IL A+ I G N + D +R LL I LK A Sbjct: 101 VSTFHSMCVRILRAQANLIPGLNTNFTIYDSDDSRRLLTMIARDMNLDLKRFASRTVASA 160 Query: 143 IMQQFPLEANI-TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I L+ + T A+AD E+ K E T+A I + + L+ SN Sbjct: 161 ISN---LKNELRTPDEALADAEEDKNPFNE----TVAQIFAEYQKRLRA--------SNA 205 Query: 202 EDIETLISDII 212 D + LI +++ Sbjct: 206 VDFDDLIGEVV 216 >gi|94990159|ref|YP_598259.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10270] gi|251764561|sp|Q1JHM1|ADDA_STRPD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|94543667|gb|ABF33715.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10270] Length = 1222 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 19/151 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L +L L T T AA E+ R+ + L + Sbjct: 58 VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 I A+ T Q K L L++ + T+ AF + ++ ++ I+S Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISS 158 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 F I ++ + ++++ S L + ++ E Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFNEFMNQKE 189 >gi|54310566|ref|YP_131586.1| DNA-dependent helicase II [Photobacterium profundum SS9] gi|46915009|emb|CAG21784.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum SS9] Length = 724 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 41/157 (26%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A +++ +T T Sbjct: 7 LDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLVHRIAWLMQIEQASSYSVMSVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ E++ + G+ Sbjct: 65 KAAAEMRGRINELMEG--------------------------------------SSAGMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T H C +++ L+A + F I D + +L+ Sbjct: 87 NGTFHGLCHRMLRAHYLDARLPDDFNILDSDDQMRLL 123 >gi|238019225|ref|ZP_04599651.1| hypothetical protein VEIDISOL_01089 [Veillonella dispar ATCC 17748] gi|237863924|gb|EEP65214.1| hypothetical protein VEIDISOL_01089 [Veillonella dispar ATCC 17748] Length = 729 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 26/45 (57%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL +P +L +T T AA EM RV Sbjct: 27 AGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFTNKAAKEMKSRV 71 >gi|71910408|ref|YP_281958.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS5005] gi|71853190|gb|AAZ51213.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS5005] Length = 1222 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 19/151 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L +L L T T AA E+ R+ + L + Sbjct: 58 VSASAGSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERI------ENKLYSQ 111 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 I A+ T Q K L L++ + T+ AF + ++ ++ I+S Sbjct: 112 I--AQTTDFQMKV-----------YLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISS 158 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 F I ++ + ++++ S L + ++ E Sbjct: 159 QFRIMQDKAEQDVLKQEVFSKLFNEFMNQKE 189 >gi|170726988|ref|YP_001761014.1| exodeoxyribonuclease V subunit beta [Shewanella woodyi ATCC 51908] gi|169812335|gb|ACA86919.1| exodeoxyribonuclease V, beta subunit [Shewanella woodyi ATCC 51908] Length = 1229 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 8/139 (5%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87 S + A+AG+GKT + +RLLL + P+ L C +T T AA E+ R+ I Sbjct: 25 SRLIEASAGTGKTFTIAGLYVRLLLGHEIPTPLTCEQILVVTFTNAATGELRDRIRRKIQ 84 Query: 88 -AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 A+ E+ + + +S+ A L L++ + TIH FC+ I+ Sbjct: 85 LAYRCFIGLDTGDELIESLYRLTPESERPLALKRLDLALKSLDEASIFTIHGFCQRILAD 144 Query: 147 FPLEANI--TSHFAIADEE 163 E+++ S F + D E Sbjct: 145 MAFESSLLFESEFTLDDSE 163 >gi|302346280|ref|YP_003814578.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845] gi|302150309|gb|ADK96570.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845] Length = 896 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 41/150 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A+ G GKTHIL +R+ +LCLT T AA EM++R+ +++ Sbjct: 27 VLASPGCGKTHILAERIRYARERGVKYEDMLCLTFTNRAAREMTNRIQKVVGG------- 79 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 D S+ L V +H FC + + + I + Sbjct: 80 -----------------DFSE--------------LMVGNVHRFCSKFLFE---QGRIPA 105 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 AI D+E++ +I + + + D N Sbjct: 106 DSAIIDDEEAVSIIADYRNEDEEGVTRDFN 135 >gi|225621491|ref|YP_002722750.1| UvrD/REP helicase [Brachyspira hyodysenteriae WA1] gi|225216312|gb|ACN85046.1| UvrD/REP helicase [Brachyspira hyodysenteriae WA1] Length = 1131 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 15/148 (10%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +V+A+AG+GKT + + L+LL S ++ +T TKAAA EM R+ + + Sbjct: 22 CFVNASAGTGKTSTITEIYLKLLENKEKVSNIVVITFTKAAANEMLFRIR---SKVRNKI 78 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 DEI + K +K D+ K IL + K+ TI+AF +I + + +I Sbjct: 79 DEIKNTNDEKSIKEKKYWQDVYK------DILTSA---KISTINAFANSIAMENAMYLSI 129 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIM 181 + +I ++ I+E KS + +I+ Sbjct: 130 PPNMSILEDSID---IQETLKSEILNIL 154 >gi|85711578|ref|ZP_01042636.1| Superfamily I DNA helicase, UvrD [Idiomarina baltica OS145] gi|85694730|gb|EAQ32670.1| Superfamily I DNA helicase, UvrD [Idiomarina baltica OS145] Length = 724 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 2/75 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKA 73 LIS +Q A S R V A AGSGKT +LV R+ L+ + P ++L +T T Sbjct: 6 LISGLNEKQATAVSADDRPMLVLAGAGSGKTRVLVHRIAWLIQERRYSPYSILAVTFTNK 65 Query: 74 AAAEMSHRVLEIITA 88 AA+EM RV +++ + Sbjct: 66 AASEMRGRVEQLLGS 80 >gi|113970112|ref|YP_733905.1| exodeoxyribonuclease V subunit beta [Shewanella sp. MR-4] gi|113884796|gb|ABI38848.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. MR-4] Length = 1274 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 15/158 (9%) Query: 20 TKSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LT 69 TK L DP S + A+AG+GKT+ + LRLLL + +L C +T Sbjct: 2 TKVSPALPLDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGLSESLNCEQILVVT 61 Query: 70 HTKAAAAEMSHRVLEIITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 T AA E+ R+ I L EI + + K P R + L++ Sbjct: 62 FTNAATEELRDRIRRRIQVAFKCFLGLEINDPFVQALYDKTPEAERAIALRRFDLA-LKS 120 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANI--TSHFAIADEE 163 + TIH FC+ I+ E+++ S F + D E Sbjct: 121 LDEAAIFTIHGFCQRILADLAFESSLLFESDFTLDDSE 158 >gi|240949012|ref|ZP_04753366.1| exodeoxyribonuclease V beta chain [Actinobacillus minor NM305] gi|240296599|gb|EER47217.1| exodeoxyribonuclease V beta chain [Actinobacillus minor NM305] Length = 1202 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 13/134 (9%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPST---------LLCLTHTKAAAAEMSHRVL 83 S+ + A+AG+GKTH + LRLLL H + +L +T TKAA E+ R+ Sbjct: 14 SSLIEASAGTGKTHTIKNLYLRLLLGLGHDKSAFQPLTVAQILVVTFTKAATEELRERIR 73 Query: 84 EIITAWSHLSDEILSAEITKIQG--KKPNKSDMSKARHLL-ITILETPGGL-KVQTIHAF 139 E I A E LS E TK ++ + +K LL + I E L V TIH+F Sbjct: 74 ENIQACYTFFQERLSGEETKSDDFFEQLFEQVENKEEALLRLRIAEREIDLASVFTIHSF 133 Query: 140 CEAIMQQFPLEANI 153 C+ ++ QF ++ + Sbjct: 134 CQKMLFQFAFDSGV 147 >gi|329118654|ref|ZP_08247358.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Neisseria bacilliformis ATCC BAA-1200] gi|327465389|gb|EGF11670.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Neisseria bacilliformis ATCC BAA-1200] Length = 805 Score = 43.5 bits (101), Expect = 0.024, Method: Composition-based stats. Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 2/82 (2%) Query: 7 FQEHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 F S + L+ EQL A P +SA V A AGSGKT +L R+ LL ++ A + Sbjct: 74 FSTESPSSALLQGLNPEQLAAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSSQASVHS 133 Query: 65 LLCLTHTKAAAAEMSHRVLEII 86 ++ +T T AA EM R+ +I Sbjct: 134 IMAVTFTNKAAKEMQTRLGAMI 155 >gi|325105548|ref|YP_004275202.1| UvrD/REP helicase [Pedobacter saltans DSM 12145] gi|324974396|gb|ADY53380.1| UvrD/REP helicase [Pedobacter saltans DSM 12145] Length = 1072 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 15/134 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AGSGKT L L LL +N + +L +T T A EM R+LE++ + + + Sbjct: 8 LQASAGSGKTFSLAVHYLTLLFSNESKYREILAVTFTNKATEEMKSRILEVLKSLAENNG 67 Query: 95 E---------ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + IL A + K K+D R IL V TI F + +++ Sbjct: 68 DTGIESYRKLILEAYPAFTREKLSEKADKIYRR-----ILHDYSRFSVNTIDGFVQKVIR 122 Query: 146 QFPLEANITSHFAI 159 F E + + +++ Sbjct: 123 GFAFELGLDASYSL 136 >gi|237751187|ref|ZP_04581667.1| ATP-dependent DNA helicase [Helicobacter bilis ATCC 43879] gi|229372553|gb|EEO22944.1| ATP-dependent DNA helicase [Helicobacter bilis ATCC 43879] Length = 711 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 34/139 (24%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A AGSGKT L R+ LL L LT T AA EM R L++I + S Sbjct: 26 AGAGSGKTKTLTTRLAYLLSIGIPAQNTLTLTFTNKAAREMRERALKLIESMS------- 78 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157 I ++ TP + T H F +Q++ + S F Sbjct: 79 ------------------------IPMINTP---LLCTFHKFGLLFLQRYIHLLSRNSMF 111 Query: 158 AIADEEQSKKLIEEAKKST 176 + DE+ +K+I KK++ Sbjct: 112 NVIDEDDKRKIIRNIKKNS 130 >gi|223934306|ref|ZP_03626227.1| UvrD/REP helicase [bacterium Ellin514] gi|223896769|gb|EEF63209.1| UvrD/REP helicase [bacterium Ellin514] Length = 689 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 31/147 (21%) Query: 17 ISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S +Q +A++ R + A AG+GKT ++ R+ ++ P ++L +T T AA Sbjct: 4 LSTLNPQQRMAAETIRGPVLILAGAGTGKTRVITFRIAHMIERGVAPGSILAVTFTNKAA 63 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV ++I +P+K K+R E P + T Sbjct: 64 REMQERVNKLIP--------------------RPSK----KSRD------EKPERPTLCT 93 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADE 162 H+ C I++Q + +F I D+ Sbjct: 94 FHSLCVRILRQHIEKLGYKKNFVIYDQ 120 >gi|162148662|ref|YP_001603123.1| putative DNA helicase II [Gluconacetobacter diazotrophicus PAl 5] gi|161787239|emb|CAP56832.1| putative DNA helicase II [Gluconacetobacter diazotrophicus PAl 5] Length = 699 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 30/53 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT+ L RV L+ P +L LT ++ A+ EM+ RV I A Sbjct: 44 VIAGAGSGKTNTLAHRVAHLIATGTDPRRILLLTFSRRASTEMTRRVERICRA 96 >gi|300857964|ref|YP_003782947.1| hypothetical protein cpfrc_00546 [Corynebacterium pseudotuberculosis FRC41] gi|300685418|gb|ADK28340.1| hypothetical protein cpfrc_00546 [Corynebacterium pseudotuberculosis FRC41] gi|302205693|gb|ADL10035.1| Putative DNA helicase II [Corynebacterium pseudotuberculosis C231] gi|302330245|gb|ADL20439.1| Putative DNA helicase II [Corynebacterium pseudotuberculosis 1002] gi|308275928|gb|ADO25827.1| Putative DNA helicase II [Corynebacterium pseudotuberculosis I19] Length = 683 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 IDL ++ AS P + A AG+GKT + R+ L+ A P+ +L +T T+ Sbjct: 2 IDLNELDSDQRAAASAPRGPVAILAGAGTGKTRTITYRIANLIDRGMASPNRVLAVTFTR 61 Query: 73 AAAAEMSHRV 82 AA EM HR+ Sbjct: 62 RAAGEMRHRL 71 >gi|149193951|ref|ZP_01871049.1| HELICASE [Caminibacter mediatlanticus TB-2] gi|149135904|gb|EDM24382.1| HELICASE [Caminibacter mediatlanticus TB-2] Length = 905 Score = 43.5 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 9/171 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + LLL A+P ++ +T T +A EM R++ + DE Sbjct: 7 LKASAGSGKTFSLANRYISLLLKGANPKEIVAITFTNKSAREMEERIIRYLRDIK--KDE 64 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 ++ + G K + KA +L L++ + + TI +F + I ++F Sbjct: 65 NFLKKLVENTGMS-EKEIIKKAPIILDKFLKS--DIHITTIDSFIQKIARKFSYYGGFDI 121 Query: 156 HFAIAD---EEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYEILEISNDE 202 F + E K ++ ++ NEE +F E L + + E Sbjct: 122 DFDVKSDNLEAVFSKFVDSLNDKEFEELVNFSKNEENILSFLESLYLIDKE 172 >gi|153833972|ref|ZP_01986639.1| exodeoxyribonuclease V, beta subunit [Vibrio harveyi HY01] gi|148869710|gb|EDL68691.1| exodeoxyribonuclease V, beta subunit [Vibrio harveyi HY01] Length = 1212 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 23/133 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT + LRLLL + T +L +T T+AA AE+ R+ Sbjct: 23 IEASAGTGKTFTIAGLYLRLLLGHGTTDTKHRVPLTVDQILVVTFTEAATAELRDRIRAR 82 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 I A SD ++ + +I+ K +A +L+ V TIH F Sbjct: 83 IHDARIAFARGQSSDPVIQPLLEEIEAHK-------QAAEILLQAERQMDEAAVYTIHGF 135 Query: 140 CEAIMQQFPLEAN 152 C+ ++ Q E+ Sbjct: 136 CQRMLTQNAFESG 148 >gi|148270656|ref|YP_001245116.1| UvrD/REP helicase [Thermotoga petrophila RKU-1] gi|170289362|ref|YP_001739600.1| UvrD/REP helicase [Thermotoga sp. RQ2] gi|281412966|ref|YP_003347045.1| UvrD/REP helicase [Thermotoga naphthophila RKU-10] gi|147736200|gb|ABQ47540.1| UvrD/REP helicase [Thermotoga petrophila RKU-1] gi|170176865|gb|ACB09917.1| UvrD/REP helicase [Thermotoga sp. RQ2] gi|281374069|gb|ADA67631.1| UvrD/REP helicase [Thermotoga naphthophila RKU-10] Length = 648 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 27/46 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 V A GSGKT ++ ++ LL PS +L +T T+AAA EM R Sbjct: 36 VIAGPGSGKTRVITYKIAYLLANGVDPSRILLVTFTRAAAREMVER 81 >gi|293390017|ref|ZP_06634351.1| exodeoxyribonuclease V, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950551|gb|EFE00670.1| exodeoxyribonuclease V, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 1234 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 15/143 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLA---NAHPSTL-----LCLTHTKAAAAEMSHRVLEII- 86 + A+AG+GKT+ + LRLLL N P +L L +T T+ A E+ ++ E I Sbjct: 30 IEASAGTGKTYTMGSLYLRLLLQAGENVFPHSLNVEQILVVTFTEMATEELKRKIRERIY 89 Query: 87 ------TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 TA+ D + + ++ +D A L + + TIH FC Sbjct: 90 AAKQKLTAYQQTQDPAVFEQDEFLRQLADTITDFPLAIQRLTLAEQNMDLAAIYTIHGFC 149 Query: 141 EAIMQQFPLEANITSHFAIADEE 163 ++ Q+ + I + ++ EE Sbjct: 150 RRMLMQYAFNSGIHFNLELSGEE 172 >gi|160947350|ref|ZP_02094517.1| hypothetical protein PEPMIC_01284 [Parvimonas micra ATCC 33270] gi|158446484|gb|EDP23479.1| hypothetical protein PEPMIC_01284 [Parvimonas micra ATCC 33270] Length = 615 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 39/137 (28%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A + A GSGKT +L+ R+L L+ N PS ++ +T +K+ +M R L Sbjct: 18 ALILAVPGSGKTTVLLNRILNLIKNHNIDPSEIISITFSKSQGIDMEKRFL--------- 68 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + P E G + +TIHAFC I++ + N Sbjct: 69 -------------AQNP----------------EFRGKITFKTIHAFCYEIVRNYMKLKN 99 Query: 153 ITSHFAIADEEQSKKLI 169 I + E ++ LI Sbjct: 100 IKKTLIEGNNEFNRILI 116 >gi|110634338|ref|YP_674546.1| ATP-dependent DNA helicase Rep [Mesorhizobium sp. BNC1] gi|110285322|gb|ABG63381.1| ATP-dependent DNA helicase, Rep family [Chelativorans sp. BNC1] Length = 876 Score = 43.5 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Query: 23 EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 EQ LA + T V A AG+GKT +L R+ +L A+PS +L +T T AA EM Sbjct: 48 EQRLAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGRAYPSQILAVTFTNKAAREMKT 107 Query: 81 RV 82 R+ Sbjct: 108 RI 109 >gi|288921364|ref|ZP_06415644.1| UvrD/REP helicase [Frankia sp. EUN1f] gi|288347216|gb|EFC81513.1| UvrD/REP helicase [Frankia sp. EUN1f] Length = 1138 Score = 43.5 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Query: 23 EQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80 EQL A+ P A V A AGSGKT ++ RV+ L+ P +L LT T AAAE++ Sbjct: 49 EQLAAATAPLEPAVVIAGAGSGKTSVMAARVVWLVATRQVEPGRVLGLTFTNKAAAELAG 108 Query: 81 RV 82 RV Sbjct: 109 RV 110 >gi|158312780|ref|YP_001505288.1| UvrD/REP helicase [Frankia sp. EAN1pec] gi|158108185|gb|ABW10382.1| UvrD/REP helicase [Frankia sp. EAN1pec] Length = 1088 Score = 43.5 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Query: 23 EQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80 EQL A+ P A V A AGSGKT ++ RV+ L+ P +L LT T AAAE++ Sbjct: 22 EQLAAATAPLEPAVVIAGAGSGKTSVMAARVVWLVATRQVEPGRVLGLTFTNKAAAELAG 81 Query: 81 RV 82 RV Sbjct: 82 RV 83 >gi|260885683|ref|ZP_05735545.2| ATP-dependent helicase [Prevotella tannerae ATCC 51259] gi|260851937|gb|EEX71806.1| ATP-dependent helicase [Prevotella tannerae ATCC 51259] Length = 1084 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 5/144 (3%) Query: 38 ANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L Q L +LL +L +T T A EM R+L + + D Sbjct: 33 ASAGSGKTFTLAQNYLVQLLSKGGSHRYILAVTFTNKATTEMKQRILAYLYDLAEGRDND 92 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 + + + G+ + +A+ L IL +V TI F + ++ E ++++ Sbjct: 93 FTRALAERLGQPADLK--QRAQAALDGILHDYDHFQVMTIDKFFQQLLSNLAHELGLSAN 150 Query: 157 FAIADEEQSKKLIEEAKKSTLASI 180 + I E +K ++EA L +I Sbjct: 151 YRI--ELDDRKAVDEAVDFLLDAI 172 >gi|257456971|ref|ZP_05622152.1| helicase, UvrD/Rep family [Treponema vincentii ATCC 35580] gi|257445680|gb|EEV20742.1| helicase, UvrD/Rep family [Treponema vincentii ATCC 35580] Length = 661 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 39/147 (26%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A AGSGKT ++ R+ +L + S +L LT T AA EM R+ E+ Sbjct: 25 AGAGSGKTRVITFRIAHMLESGIPQSQILALTFTNKAAREMEQRIKELT----------- 73 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157 GKK L + T HA I++++ +F Sbjct: 74 --------GKKLQN-------------------LTISTFHALGVKILREYIDRLGWRQNF 106 Query: 158 AIADEEQSKKLIEE-AKKSTLASIMLD 183 +I DE +LI+E AK+ +A+ LD Sbjct: 107 SIYDEVDRNQLIKESAKELKIATETLD 133 >gi|325473361|gb|EGC76556.1| ATP-dependent DNA helicase PcrA [Treponema denticola F0402] Length = 674 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 38/137 (27%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A AGSGKT ++ R+ +L S +L LT T AA EM R+ E+ Sbjct: 27 AGAGSGKTRVITFRIAHMLDKGIPQSQILALTFTNKAAKEMQERIKELT----------- 75 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157 GKK L V T HAF +++ + S+F Sbjct: 76 --------GKKLQ-------------------NLTVSTFHAFGVKVLRSHIDKIGWRSNF 108 Query: 158 AIADEEQSKKLIEEAKK 174 +I DE +LI+E + Sbjct: 109 SIYDETDRNQLIKECGR 125 >gi|319405990|emb|CBI79622.1| DNA helicase II [Bartonella sp. AR 15-3] Length = 781 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L L AHP +L +T T AA EM R+ E++ Sbjct: 29 VLAGAGTGKTRVLTTRISHILHLGLAHPKQILAVTFTNKAAHEMKIRIGELV 80 >gi|241889348|ref|ZP_04776649.1| putative ATP-dependent deoxyribonuclease subunit A [Gemella haemolysans ATCC 10379] gi|241863891|gb|EER68272.1| putative ATP-dependent deoxyribonuclease subunit A [Gemella haemolysans ATCC 10379] Length = 1217 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 20/113 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A AGSGKT +L +R+ R + +N LL LT T AAA M I+ + +S+ Sbjct: 35 VAAAAGSGKTEVLSERIARKVASNRWDIDRLLVLTFTTAAAKNM------IVRIENKISE 88 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 +LS K+ + + K R L+ + TI +FC ++++F Sbjct: 89 RLLST------NKEEDLIYLRKQRMLM-------NDAYISTIDSFCLNVLKKF 128 >gi|224023774|ref|ZP_03642140.1| hypothetical protein BACCOPRO_00490 [Bacteroides coprophilus DSM 18228] gi|224016996|gb|EEF75008.1| hypothetical protein BACCOPRO_00490 [Bacteroides coprophilus DSM 18228] Length = 360 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 4/125 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L + ++LL+ + +L +T T A EM R+L + + S E Sbjct: 65 ASAGSGKTFTLAVQYIKLLIEDTSAYRKILAVTFTNKATTEMKKRILYQLYGIATASPES 124 Query: 97 LS--AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 EI K GK ++ + AR L I+ +++TI +F +++M+ E + Sbjct: 125 EGYLKEILKTSGKSVDEIRQA-ARTALKNIIHDYSRFRIETIDSFFQSVMRNLSRELELG 183 Query: 155 SHFAI 159 ++ I Sbjct: 184 ANLNI 188 >gi|42522842|ref|NP_968222.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100] gi|39574038|emb|CAE79215.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100] Length = 672 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 56/143 (39%), Gaps = 43/143 (30%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLC-LTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT +LV R RL+ + +C LT T AA E+ HRV Sbjct: 26 AGAGSGKTTVLVSRTGRLISERVAQAQEICVLTFTNKAARELKHRV-------------- 71 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 G K S G+ T H+F I+++F A ++ + Sbjct: 72 ---------GAKLGSSG---------------SGMWAGTFHSFGLQILRRFHKHAGLSPY 107 Query: 157 FAIADEEQS----KKLIEEAKKS 175 F I D+ K LI++ K S Sbjct: 108 FGIVDQSDCNAIVKDLIKDIKNS 130 >gi|15604312|ref|NP_220828.1| DNA helicase II [Rickettsia prowazekii str. Madrid E] gi|6226298|sp|Q9ZD95|UVRD_RICPR RecName: Full=Probable DNA helicase II homolog gi|3861004|emb|CAA14904.1| DNA HELICASE II (uvrD) [Rickettsia prowazekii] gi|292572062|gb|ADE29977.1| DNA helicase II [Rickettsia prowazekii Rp22] Length = 658 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A AG+GKT +L R+ ++ N A P +L +T T AA EMS RV +I + Sbjct: 33 AGAGTGKTKVLTSRIANIIHQNLALPHNILAVTFTNKAAKEMSERVHNLINCYG 86 >gi|319407484|emb|CBI81134.1| DNA helicase II [Bartonella sp. 1-1C] Length = 815 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L L AHP +L +T T AA EM R+ E++ Sbjct: 63 VLAGAGTGKTRVLTTRISHILHLGLAHPKQILAVTFTNKAAHEMKIRIGELV 114 >gi|312795642|ref|YP_004028564.1| DNA helicase II [Burkholderia rhizoxinica HKI 454] gi|312167417|emb|CBW74420.1| DNA helicase II (EC 3.6.1.-) [Burkholderia rhizoxinica HKI 454] Length = 791 Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL++ EQ A + P A + A AGSGKT +L+ R+ L+ A P+ +L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLISRGEASPAGILAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMLIRL 72 >gi|307243582|ref|ZP_07525727.1| ATP-dependent nuclease subunit A [Peptostreptococcus stomatis DSM 17678] gi|306493023|gb|EFM65031.1| ATP-dependent nuclease subunit A [Peptostreptococcus stomatis DSM 17678] Length = 1310 Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 3/50 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV 82 V+A AGSGKT +L++R++ L+ P LL +T TKAAA EM RV Sbjct: 22 VAAAAGSGKTAVLIERIISLVTDKEKPIDIDKLLVVTFTKAAANEMRERV 71 >gi|90419186|ref|ZP_01227096.1| uvrD/REP helicase [Aurantimonas manganoxydans SI85-9A1] gi|90336123|gb|EAS49864.1| uvrD/REP helicase [Aurantimonas manganoxydans SI85-9A1] Length = 852 Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 D +S +EQ A + T V A AG+GKT +L R+ +L A PS +L +T T Sbjct: 9 DYLSGLNAEQRAAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGRAWPSQILAVTFTN 68 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 69 KAAREMKQRI 78 >gi|253565411|ref|ZP_04842866.1| ATP-dependent helicase [Bacteroides sp. 3_2_5] gi|251945690|gb|EES86097.1| ATP-dependent helicase [Bacteroides sp. 3_2_5] Length = 1057 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 4/125 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + D Sbjct: 9 ASAGSGKTFTLAVEYIKLLIRNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDPD 67 Query: 97 LSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A + +I + + D + A L +L +V+TI +F +++M+ E ++ Sbjct: 68 SDAYLKRIIAETGHSEDEIRTTAGIALGYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127 Query: 155 SHFAI 159 + I Sbjct: 128 PNLNI 132 >gi|223986797|ref|ZP_03636779.1| hypothetical protein HOLDEFILI_04102 [Holdemania filiformis DSM 12042] gi|223961230|gb|EEF65760.1| hypothetical protein HOLDEFILI_04102 [Holdemania filiformis DSM 12042] Length = 721 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 33/163 (20%), Positives = 70/163 (42%), Gaps = 41/163 (25%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 +I+++++ + + +L S ++ + A AGSGKT +L R+ L+ + P+ +L +T T Sbjct: 3 SIEMLNENQKKAVLTS--SQYVRIIAGAGSGKTRVLTMRIAHLIEQCHVWPNKILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +++ E + Sbjct: 61 NKAANEMKERIRQMLP--------------------------------------EQGNAV 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + TIH+ C I+++ + +F + D + + +++EA K Sbjct: 83 FISTIHSLCVRILREDIPAMGMPRNFTVMDADDQRSILKEAYK 125 >gi|183602118|ref|ZP_02963486.1| conserved ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis HN019] gi|219683030|ref|YP_002469413.1| UvrD/REP helicase [Bifidobacterium animalis subsp. lactis AD011] gi|241191350|ref|YP_002968744.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196756|ref|YP_002970311.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218611|gb|EDT89254.1| conserved ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis HN019] gi|219620680|gb|ACL28837.1| UvrD/REP helicase [Bifidobacterium animalis subsp. lactis AD011] gi|240249742|gb|ACS46682.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251310|gb|ACS48249.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177477|gb|ADC84723.1| Putative ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis BB-12] gi|295794343|gb|ADG33878.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis V9] Length = 1378 Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 37/66 (56%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + ++++ +D + V A AGSGKT + +RV+ L+ P +L LT T AA+ Sbjct: 8 VPSAEQQRIVDADANANVIVVAGAGSGKTFTMTERVIHLIHEGVPPEHILGLTFTNKAAS 67 Query: 77 EMSHRV 82 E+ RV Sbjct: 68 ELLSRV 73 >gi|15643994|ref|NP_229043.1| ATP-dependent DNA helicase [Thermotoga maritima MSB8] gi|4981792|gb|AAD36313.1|AE001779_15 ATP-dependent DNA helicase [Thermotoga maritima MSB8] Length = 648 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 27/46 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 V A GSGKT ++ ++ LL PS +L +T T+AAA EM R Sbjct: 36 VIAGPGSGKTRVITYKIAYLLANGVDPSRILLVTFTRAAAREMVER 81 >gi|281490502|ref|YP_003352482.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp. lactis KF147] gi|281374320|gb|ADA63853.1| ATP-dependent nuclease, subunit A [Lactococcus lactis subsp. lactis KF147] Length = 1203 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 23/177 (12%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 ++ VSA+AGSGKT ++ QR++ + L T TK AA+E+ R Sbjct: 19 KNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAASELRMR---------- 68 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 L ++ K + SD ++AR L + L+ + T+ +F + + + Sbjct: 69 -----LERDLKKA---RQESSDENQARRLTLA-LQNLSNADIGTMDSFTQKLTKTNFNRV 119 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL---KKAFYEILE-ISNDEDI 204 NI +F I ++ LI + L L ++ L K+ F E+++ S D +I Sbjct: 120 NIDPNFRILADQTESDLIRQEVFEQLVESYLSGDDGLNISKEKFEELIKNFSKDRNI 176 >gi|227497414|ref|ZP_03927646.1| possible UvrD/REP helicase [Actinomyces urogenitalis DSM 15434] gi|226833090|gb|EEH65473.1| possible UvrD/REP helicase [Actinomyces urogenitalis DSM 15434] Length = 1152 Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78 T + + P V A AGSGKT + QRV+ L+ + A P +L LT T+ AAAE+ Sbjct: 31 TPEQAAVICHPLSPVLVVAGAGSGKTATMSQRVVYLVASGAVEPGEVLGLTFTRKAAAEL 90 Query: 79 SHRV 82 + R+ Sbjct: 91 AQRI 94 >gi|168205259|ref|ZP_02631264.1| putative UvrD/REP helicase [Clostridium perfringens E str. JGS1987] gi|170663217|gb|EDT15900.1| putative UvrD/REP helicase [Clostridium perfringens E str. JGS1987] Length = 570 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 K +Q + S ++ + A AGSGKT ++ ++V +L+ P ++ C++ T+AAA E+ Sbjct: 8 NVKQKQFVFS-KSKKILLIACAGSGKTLVITRKVGQLIDERVSPESIYCISFTRAAAMEL 66 Query: 79 SHRVLEI 85 R++++ Sbjct: 67 KTRLIKL 73 >gi|157828499|ref|YP_001494741.1| DNA helicase II [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933219|ref|YP_001650008.1| DNA helicase II [Rickettsia rickettsii str. Iowa] gi|157800980|gb|ABV76233.1| DNA helicase II [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908306|gb|ABY72602.1| DNA helicase II [Rickettsia rickettsii str. Iowa] Length = 653 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A AG+GKT +L R+ ++ N A P +L +T T AA EM+ RV +I + Sbjct: 29 AGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEMAERVNSLINCYG 82 >gi|315586856|gb|ADU41237.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter pylori 35A] Length = 676 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 5/79 (6%) Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ + V A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65 Query: 78 MSHRVLEIITAWSHLSDEI 96 M RV +S LS +I Sbjct: 66 MIARV----AKYSKLSSKI 80 >gi|251792813|ref|YP_003007539.1| DNA-dependent helicase II [Aggregatibacter aphrophilus NJ8700] gi|247534206|gb|ACS97452.1| DNA helicase II [Aggregatibacter aphrophilus NJ8700] Length = 724 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 3/80 (3%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + +E +D ++ + E + S P + V A AGSGKT +L R+ L+ + +++ Sbjct: 2 DFAELLDGLNDKQREAV--SAPLGNYLVLAGAGSGKTRVLTHRIAWLIGVEGVSEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIIT 87 +T T AAAEM HR+ +++ Sbjct: 60 VTFTNKAAAEMRHRIESVLS 79 >gi|238650278|ref|YP_002916130.1| DNA helicase II [Rickettsia peacockii str. Rustic] gi|238624376|gb|ACR47082.1| DNA helicase II [Rickettsia peacockii str. Rustic] Length = 653 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A AG+GKT +L R+ ++ N A P +L +T T AA EM+ RV +I + Sbjct: 29 AGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEMAERVNSLINCYG 82 >gi|312622478|ref|YP_004024091.1| uvrd/rep helicase [Caldicellulosiruptor kronotskyensis 2002] gi|312202945|gb|ADQ46272.1| UvrD/REP helicase [Caldicellulosiruptor kronotskyensis 2002] Length = 714 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 V A AGSGKT ++ R+ +L + A P +L +T T AA EM R+ +++ S Sbjct: 24 VLAGAGSGKTRVITYRIAYILNMGLADPGNILAITFTNKAADEMKERIKRLVSTQS 79 >gi|25010945|ref|NP_735340.1| exonuclease RexA [Streptococcus agalactiae NEM316] gi|77413173|ref|ZP_00789372.1| reticulocyte binding protein [Streptococcus agalactiae 515] gi|81588835|sp|Q8E5T9|ADDA_STRA3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|23095324|emb|CAD46535.1| unknown [Streptococcus agalactiae NEM316] gi|77160791|gb|EAO71903.1| reticulocyte binding protein [Streptococcus agalactiae 515] Length = 1207 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 19/135 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L LL +L T T AA E+ R+ + I ++ Sbjct: 45 VSASAGSGKTFVMVERILDKLLRGVPIDSLFISTFTVKAAGELKERLEKKI------NES 98 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + SAE + + L L + T+ AF + I+ Q+ I+ Sbjct: 99 LKSAESDDL-------------KQFLTQQLVGIQTADIGTMDAFTQKIVNQYGYTLGISP 145 Query: 156 HFAIADEEQSKKLIE 170 F I ++ + +I+ Sbjct: 146 IFRILQDKNEQDVIK 160 >gi|258406127|ref|YP_003198869.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692] gi|257798354|gb|ACV69291.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692] Length = 714 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 38/139 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT +V R+ RL+ + P ++L LT T+ AA EM +T +HL+ + Sbjct: 27 VIAGAGSGKTRTVVYRLARLVENSVPPESILLLTFTRKAANEM-------LTRAAHLAGQ 79 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 L G+ T HAF ++++F Sbjct: 80 GLH-------------------------------GVAGGTFHAFAFGMLRRFGQRLGYDQ 108 Query: 156 HFAIADEEQSKKLIEEAKK 174 +I D ++ ++++ ++ Sbjct: 109 GVSIMDRSDAEGVVKQVRE 127 >gi|229586731|ref|YP_002845232.1| DNA helicase II [Rickettsia africae ESF-5] gi|228021781|gb|ACP53489.1| DNA helicase II [Rickettsia africae ESF-5] Length = 653 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A AG+GKT +L R+ ++ N A P +L +T T AA EM+ RV +I + Sbjct: 29 AGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEMAERVNSLINCYG 82 >gi|60681671|ref|YP_211815.1| putative helicase [Bacteroides fragilis NCTC 9343] gi|60493105|emb|CAH07886.1| putative helicase [Bacteroides fragilis NCTC 9343] Length = 1057 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 4/125 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + D Sbjct: 9 ASAGSGKTFTLAVEYIKLLIRNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDPD 67 Query: 97 LSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A + +I + + D + A L +L +V+TI +F +++M+ E ++ Sbjct: 68 SDAYLKRIIAETGHSEDEIRTTAGIALGYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127 Query: 155 SHFAI 159 + I Sbjct: 128 PNLNI 132 >gi|53713424|ref|YP_099416.1| ATP-dependent helicase [Bacteroides fragilis YCH46] gi|52216289|dbj|BAD48882.1| ATP-dependent helicase [Bacteroides fragilis YCH46] Length = 1057 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 4/125 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + D Sbjct: 9 ASAGSGKTFTLAVEYIKLLIRNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDPD 67 Query: 97 LSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A + +I + + D + A L +L +V+TI +F +++M+ E ++ Sbjct: 68 SDAYLKRIIAETGHSEDEIRTTAGIALGYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127 Query: 155 SHFAI 159 + I Sbjct: 128 PNLNI 132 >gi|84497950|ref|ZP_00996747.1| putative ATP-dependent DNA helicase II [Janibacter sp. HTCC2649] gi|84381450|gb|EAP97333.1| putative ATP-dependent DNA helicase II [Janibacter sp. HTCC2649] Length = 838 Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ LL A P +L +T T AAAEM RV +++ Sbjct: 102 IIAGAGSGKTRVLTHRIGYLLAARGVQPGQILAITFTNKAAAEMRERVQDLV 153 >gi|324991607|gb|EGC23540.1| exonuclease RexA [Streptococcus sanguinis SK353] Length = 1224 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 37/182 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++VQR++ +L S L T T AA E+ R+ L Sbjct: 45 VSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKERL------EKELGQA 98 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + AE +++ +HL + + P + T+ AF + ++ ++ + Sbjct: 99 LKEAESPELK------------QHLAQQLADLPNA-DIGTMDAFTQKVLSRYGYLLGLAP 145 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215 +F I +S ++L N + F ++ + D + + L S ++ N Sbjct: 146 NFRIL-------------QSASEQLILQN-----EVFSQVFDRYYDSERQALFSRLVKNF 187 Query: 216 TA 217 T Sbjct: 188 TG 189 >gi|265763690|ref|ZP_06092258.1| ATP-dependent helicase [Bacteroides sp. 2_1_16] gi|263256298|gb|EEZ27644.1| ATP-dependent helicase [Bacteroides sp. 2_1_16] Length = 1057 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 4/125 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + D Sbjct: 9 ASAGSGKTFTLAVEYIKLLIRNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDPD 67 Query: 97 LSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A + +I + + D + A L +L +V+TI +F +++M+ E ++ Sbjct: 68 SDAYLKRIIAETGHSEDEIRTTAGIALGYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127 Query: 155 SHFAI 159 + I Sbjct: 128 PNLNI 132 >gi|296121632|ref|YP_003629410.1| exodeoxyribonuclease V [Planctomyces limnophilus DSM 3776] gi|296013972|gb|ADG67211.1| Exodeoxyribonuclease V [Planctomyces limnophilus DSM 3776] Length = 1226 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 34/157 (21%), Positives = 72/157 (45%), Gaps = 23/157 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA--HP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 +SA AG GKT +L +R L L +P ++L+ +T T AA EM RV Sbjct: 23 LSAGAGCGKTFVLTRRFLGYLKPGPEQYPLTSLVAITFTDKAAREMRDRVRATC------ 76 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + +++ P ++D H L ++L ++ TIH+FC I++ + + Sbjct: 77 --------LQRVRECPPEEAD-----HWL-SLLRDLDRARISTIHSFCGNILRSHAIASG 122 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + F + + L+ ++ +++ +++++ + Sbjct: 123 LDPEFTTLEASVADSLLRQSIEASATRLLVNDQPAFR 159 >gi|237750192|ref|ZP_04580672.1| predicted protein [Helicobacter bilis ATCC 43879] gi|229374086|gb|EEO24477.1| predicted protein [Helicobacter bilis ATCC 43879] Length = 276 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 T +++A+AGSGKT L R + LL + +L LT TK AA EM R+ Sbjct: 6 TNHIFLNASAGSGKTFALCVRYIALLFQGVPANEILTLTFTKKAANEMKERI 57 >gi|220916545|ref|YP_002491849.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1] gi|219954399|gb|ACL64783.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1] Length = 1195 Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 20/139 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-----HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 VSA AGSGKT LV+ +RLL +A P L +T T+ AA E+ Sbjct: 23 VSAGAGSGKTTALVELCVRLLEGSALGSPCEPRALAAITFTEKAAEEL------------ 70 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 +E L A +T S + L + V TIH FC ++++ E Sbjct: 71 ---EERLRAAVTARARAAREADPGSPEARAWLERLHALDAMAVGTIHGFCGRLLREHAPE 127 Query: 151 ANITSHFAIADEEQSKKLI 169 A + A+ DE+++ I Sbjct: 128 AGLDPEAAVLDEDRASAWI 146 >gi|239916963|ref|YP_002956521.1| ATP-dependent DNA helicase PcrA [Micrococcus luteus NCTC 2665] gi|281414579|ref|ZP_06246321.1| ATP-dependent DNA helicase PcrA [Micrococcus luteus NCTC 2665] gi|239838170|gb|ACS29967.1| ATP-dependent DNA helicase PcrA [Micrococcus luteus NCTC 2665] Length = 858 Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ LL A P +L +T T AAAEM RV +I Sbjct: 87 IVAGAGSGKTRVLTHRIAWLLATGRARPHEILAITFTNKAAAEMRERVAGLI 138 >gi|120437697|ref|YP_863383.1| UvrD/REP family helicase [Gramella forsetii KT0803] gi|117579847|emb|CAL68316.1| UvrD/REP family helicase [Gramella forsetii KT0803] Length = 1035 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 13/137 (9%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWSHL- 92 +A+AGSGKT LV+ L +L ++ +L +T T A EM R++E ++ +S Sbjct: 9 NASAGSGKTFTLVKEYLIILYSSKKRDRYKNILAITFTNKAVGEMKTRIIESLSEFSKAE 68 Query: 93 ----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 ++ +L A I + + +K+ +L +I+ ++ TI F +++ F Sbjct: 69 VSSENNPLLKAIIE--ETGYSTECIRTKSAEILKSIIHNYAAFEISTIDGFTHRVLRTFA 126 Query: 149 LEANITSHFAI---ADE 162 + I +F + ADE Sbjct: 127 RDLGIPMNFEVELSADE 143 >gi|92113735|ref|YP_573663.1| UvrD/REP helicase [Chromohalobacter salexigens DSM 3043] gi|91796825|gb|ABE58964.1| UvrD/REP helicase [Chromohalobacter salexigens DSM 3043] Length = 729 Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 22/88 (25%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS-------------- 79 A VSA AG+GKT LVQRVL LL + P +L L +AA + + Sbjct: 20 ARVSAVAGAGKTTTLVQRVLHLLASGVPPQRILVLMFNRAAREDFTAKLQREATGQRLPD 79 Query: 80 --------HRVLEIITAWSHLSDEILSA 99 HR+ + +T W +LS L A Sbjct: 80 VRTFHSIGHRLTQTLTRWGYLSPRQLIA 107 >gi|62185554|ref|YP_220339.1| DNA helicase II, UvrD [Chlamydophila abortus S26/3] gi|62148621|emb|CAH64393.1| DNA helicase II, UvrD [Chlamydophila abortus S26/3] Length = 637 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 L S+ Q+ A + P V A AG+GKT ++ R+L L+ P +L +T T A Sbjct: 2 LTSELNEAQIAAVTSPLSPILVLAGAGAGKTRVVTCRILHLINEGIAPKEILAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSD 94 A E+ R+L + +H SD Sbjct: 62 AKELKERILH-LCPQAHGSD 80 >gi|332039001|gb|EGI75430.1| UvrD/REP helicase [Hylemonella gracilis ATCC 19624] Length = 714 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ ++ RL+ A P + +T T AAAEM R +I Sbjct: 22 VLAGAGSGKTRVITHKIGRLIQAGLEPQRITAITFTNKAAAEMRERTKGLI 72 >gi|149922812|ref|ZP_01911236.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1] gi|149816355|gb|EDM75857.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1] Length = 1336 Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 13/122 (10%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 DP RS + A AG+GKT LV+R LR++ A P ++ +T T+AAAAEM RV +T Sbjct: 8 DPGRSVVLVAAAGTGKTWRLVRRYLRIVSRFADPEEIVAVTFTRAAAAEMRARVFAALTQ 67 Query: 89 WSHLS--DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 S D+ + AE+ I+G S L +T E + T+H+ C ++ + Sbjct: 68 TRAPSPEDDPVLAEL--IEG-------CSLGERLGLT--ERVAAAPIGTLHSLCARLLAE 116 Query: 147 FP 148 FP Sbjct: 117 FP 118 >gi|325283117|ref|YP_004255658.1| UvrD/REP helicase [Deinococcus proteolyticus MRP] gi|324314926|gb|ADY26041.1| UvrD/REP helicase [Deinococcus proteolyticus MRP] Length = 767 Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL+SQ +Q A+D T A V A AGSGKT L+ R+ L+ +L +T T Sbjct: 34 DLLSQLNEQQAAAADHFTGPALVIAGAGSGKTRTLIYRIAHLINHYGVDAGEILAVTFTN 93 Query: 73 AAAAEMSHRVLEII 86 AAAEM R ++ Sbjct: 94 KAAAEMRERAGRLV 107 >gi|297380108|gb|ADI34995.1| ATP-dependent DNA helicase pcrA [Helicobacter pylori v225d] Length = 675 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 5/79 (6%) Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ + V A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65 Query: 78 MSHRVLEIITAWSHLSDEI 96 M RV +S LS +I Sbjct: 66 MIARV----AKYSKLSSKI 80 >gi|257460429|ref|ZP_05625530.1| ATP-dependent DNA helicase PcrA [Campylobacter gracilis RM3268] gi|257441760|gb|EEV16902.1| ATP-dependent DNA helicase PcrA [Campylobacter gracilis RM3268] Length = 686 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 S+ ++ ++ T+ E AS + + A AGSGKT + R+ LL P L LT Sbjct: 2 SDILEGLNPTQREA--ASHVDGAMLILAGAGSGKTKTITARLAYLLSNGVPPGNTLTLTF 59 Query: 71 TKAAAAEMSHRVLEIITAWS 90 T AA EM R L +I+ + Sbjct: 60 TNKAATEMRSRALNLISGLN 79 >gi|157964534|ref|YP_001499358.1| DNA helicase II [Rickettsia massiliae MTU5] gi|157844310|gb|ABV84811.1| DNA helicase II [Rickettsia massiliae MTU5] Length = 653 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A AG+GKT +L R+ ++ N A P +L +T T AA EM+ RV +I + Sbjct: 29 AGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEMAERVNSLINCYG 82 >gi|221124374|ref|XP_002163232.1| PREDICTED: hypothetical protein [Hydra magnipapillata] Length = 815 Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats. Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 4/81 (4%) Query: 5 NSFQEHSETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-- 61 +SF T L+ EQL A + P A + A AGSGKT +L R+ LL N + Sbjct: 2 HSFAAAGSTPPLLHNLNPEQLAAVTLPAEHALILAGAGSGKTRVLTTRI-AWLLQNGYVS 60 Query: 62 PSTLLCLTHTKAAAAEMSHRV 82 P +L +T T AA EM R+ Sbjct: 61 PGGILAVTFTNKAAKEMMTRL 81 >gi|88797062|ref|ZP_01112652.1| exodeoxyribonuclease V, beta subunit [Reinekea sp. MED297] gi|88779931|gb|EAR11116.1| exodeoxyribonuclease V, beta subunit [Reinekea sp. MED297] Length = 1130 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 75/148 (50%), Gaps = 15/148 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHR----VLEIITAW- 89 + A+AG+GKT+ +V+ LRLLL +L +T TKAA AE+ +R + E + W Sbjct: 23 IEASAGTGKTYNIVRIYLRLLLEKELTVDQILVMTFTKAATAEIRNRLSAFLREALQIWE 82 Query: 90 -SHLSDEILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 + D+ A I+ + P K+ + + R L+ + E + TIH FC+ + Q Sbjct: 83 TQNYRDDKERAFYETIRRRVDPEKARL-QMRQALLQLDEA----AIYTIHGFCKRALSQQ 137 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKS 175 + ++ H + E S++L+ +A + Sbjct: 138 AFFSGLSFHANM--EADSQELMLQATQD 163 >gi|327461179|gb|EGF07512.1| exonuclease RexA [Streptococcus sanguinis SK1057] Length = 1224 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 37/182 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++VQR++ +L S L T T AA E+ R+ L Sbjct: 45 VSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKERL------EKELGKA 98 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + AE +++ +HL + + P + T+ AF + ++ ++ + Sbjct: 99 LKEAESPELK------------QHLAQQLADLPNA-DIGTMDAFTQKVLSRYGYLLGLAP 145 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215 +F I +S ++L N + F ++ + D + + L S ++ N Sbjct: 146 NFRIL-------------QSASEQLILQN-----EVFSQVFDRYYDSERQALFSRLVKNF 187 Query: 216 TA 217 T Sbjct: 188 TG 189 >gi|323127008|gb|ADX24305.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 1210 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 19/135 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L +L L T T AA E+ R+ ++ Sbjct: 46 VSASAGSGKTFVMVERILDKILRGVSVDRLFISTFTVKAATELRERI-----------EK 94 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 L AEI K SD S + L L+ + T+ AF + ++ ++ I+ Sbjct: 95 KLYAEIAKT-------SD-SLLKAYLTDQLQALSQADIGTMDAFAQKVLIRYGYSIGISP 146 Query: 156 HFAIADEEQSKKLIE 170 F I ++ + +++ Sbjct: 147 QFRIMQDKAEQDILK 161 >gi|188527736|ref|YP_001910423.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter pylori Shi470] gi|188143976|gb|ACD48393.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter pylori Shi470] Length = 676 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 5/79 (6%) Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ + V A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65 Query: 78 MSHRVLEIITAWSHLSDEI 96 M RV +S LS +I Sbjct: 66 MIARV----AKYSKLSSKI 80 >gi|308063741|gb|ADO05628.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter pylori Sat464] Length = 676 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 5/79 (6%) Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ + V A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65 Query: 78 MSHRVLEIITAWSHLSDEI 96 M RV +S LS +I Sbjct: 66 MIARV----AKYSKLSSKI 80 >gi|308062228|gb|ADO04116.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter pylori Cuz20] Length = 676 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 5/79 (6%) Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ + V A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65 Query: 78 MSHRVLEIITAWSHLSDEI 96 M RV +S LS +I Sbjct: 66 MIARV----AKYSKLSSKI 80 >gi|239947646|ref|ZP_04699399.1| ATP-dependent DNA helicase PcrA [Rickettsia endosymbiont of Ixodes scapularis] gi|239921922|gb|EER21946.1| ATP-dependent DNA helicase PcrA [Rickettsia endosymbiont of Ixodes scapularis] Length = 653 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A AG+GKT +L R+ ++ N A P +L +T T AA EM+ RV +I + Sbjct: 29 AGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEMAERVNSLINCYG 82 >gi|154147886|ref|YP_001406551.1| UvrD/REP helicase [Campylobacter hominis ATCC BAA-381] gi|153803895|gb|ABS50902.1| UvrD/REP helicase [Campylobacter hominis ATCC BAA-381] Length = 674 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 7/76 (9%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A+ P + A+AG+GKT +V R+ LL +P +L LT T AA EM I Sbjct: 12 ATAPMGHNLIIASAGTGKTSTIVARISHLLSLGVNPKKILLLTFTNKAANEM-------I 64 Query: 87 TAWSHLSDEILSAEIT 102 + S DE ++++IT Sbjct: 65 SRLSMKFDEKITSQIT 80 >gi|7329749|emb|CAB82770.1| DNA helicase II [Prochlorococcus marinus str. PAC2] Length = 624 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 20/145 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L++ PS++L +T T AA EM R LE+ Sbjct: 29 VIAGAGSGKTRALTHRIAHLIIEYKVDPSSILAVTFTNKAAREMKDR-LEL--------- 78 Query: 95 EILSAEITKIQGKKP-NKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQ------Q 146 +L+ + I +KP + ++++ R + I E L + T HA +++ + Sbjct: 79 -LLAKRLAIITHEKPWSALEVAEQRQIRNRIYREISRELWIGTFHALFARLLRFDIDKFK 137 Query: 147 FPLEANITSHFAIADEEQSKKLIEE 171 P T F+I DE ++ LI+E Sbjct: 138 DPEGLTWTRQFSIYDETDAQSLIKE 162 >gi|323351323|ref|ZP_08086979.1| exonuclease RexA [Streptococcus sanguinis VMC66] gi|322122547|gb|EFX94258.1| exonuclease RexA [Streptococcus sanguinis VMC66] Length = 1224 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 19/124 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++VQR++ +L S L T T AA E+ R+ L Sbjct: 45 VSASAGSGKTFVMVQRIIDKILRGVAVSQLFISTFTVKAAGELKERL------EKELGQA 98 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + AE +++ +HL + + P + T+ AF + ++ ++ + Sbjct: 99 LKEAESPELK------------QHLAQQLADLPNA-DIGTMDAFTQKVLSRYGYLLGLAP 145 Query: 156 HFAI 159 +F I Sbjct: 146 NFRI 149 >gi|294791935|ref|ZP_06757083.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 6_1_27] gi|294457165|gb|EFG25527.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 6_1_27] Length = 729 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 21/45 (46%), Positives = 26/45 (57%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL +P +L +T T AA EM RV Sbjct: 27 AGAGSGKTKVLTVRIAHLLGQGVNPYEILAITFTNKAAKEMKSRV 71 >gi|251782155|ref|YP_002996457.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390784|dbj|BAH81243.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 1210 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 19/135 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L +L L T T AA E+ R+ ++ Sbjct: 46 VSASAGSGKTFVMVERILDKILRGVSVDRLFISTFTVKAATELRERI-----------EK 94 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 L AEI K SD S + L L+ + T+ AF + ++ ++ I+ Sbjct: 95 KLYAEIAKT-------SD-SLLKAYLTDQLQALSQADIGTMDAFAQKVLIRYGYSIGISP 146 Query: 156 HFAIADEEQSKKLIE 170 F I ++ + +++ Sbjct: 147 QFRIMQDKAEQDILK 161 >gi|254796732|ref|YP_003081568.1| DNA helicase II, UvrD/Rep family, C-terminal fragment [Neorickettsia risticii str. Illinois] gi|254590533|gb|ACT69895.1| DNA helicase II, UvrD/Rep family, C-terminal fragment [Neorickettsia risticii str. Illinois] Length = 161 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 2/66 (3%) Query: 23 EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80 EQ LA + + A AG+GKT LV R+ L+ + AHP+ ++ +T AA EM Sbjct: 40 EQRLAVETVNGPVLILAGAGTGKTKTLVHRIAHLIKSGYAHPNQIMAVTFANKAANEMIQ 99 Query: 81 RVLEII 86 RV EI+ Sbjct: 100 RVNEIV 105 >gi|167461916|ref|ZP_02327005.1| PcrA [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382982|ref|ZP_08056812.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153005|gb|EFX45465.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 776 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 2/78 (2%) Query: 7 FQEHSETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPST 64 E +D I + +Q A + T+ + A AGSGKT +L R+ L+ + A P + Sbjct: 1 MNETKNILDAIQRLNPQQCKAVETTQGPLLIMAGAGSGKTRVLTHRIAYLIASRKAAPWS 60 Query: 65 LLCLTHTKAAAAEMSHRV 82 +L +T T AA EM RV Sbjct: 61 ILAITFTNKAAREMQDRV 78 >gi|256545197|ref|ZP_05472563.1| ATP-dependent DNA helicase PcrA [Anaerococcus vaginalis ATCC 51170] gi|256399238|gb|EEU12849.1| ATP-dependent DNA helicase PcrA [Anaerococcus vaginalis ATCC 51170] Length = 729 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 39/137 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L + L+ N +P +L +T T AA EM R+ S L D Sbjct: 23 VVAGAGSGKTRVLTTSIAYLIKEKNVNPVNILAITFTNKAANEMKERI-------SDLLD 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E +S HL I T H+ C I++ + Sbjct: 76 EDVS--------------------HLWIG-----------TFHSICARILRMNINKIGYD 104 Query: 155 SHFAIADEEQSKKLIEE 171 ++F I D K L++E Sbjct: 105 NNFTIYDTNDQKTLVKE 121 >gi|325982026|ref|YP_004294428.1| UvrD/REP helicase [Nitrosomonas sp. AL212] gi|325531545|gb|ADZ26266.1| UvrD/REP helicase [Nitrosomonas sp. AL212] Length = 738 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 60/157 (38%), Gaps = 40/157 (25%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L+S +QL A + P +S V A AGSGKT +L R+ L+ + PS +L +T T Sbjct: 4 LLSDLNPQQLEAITLPHQSVLVLAGAGSGKTRVLTTRIAYLIQSGQVSPSGILAVTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ P G+ + Sbjct: 64 AAKEMLARITAMLPI--------------------------------------NPRGMWI 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H C +++ +A + F I D LI+ Sbjct: 86 GTFHGLCHRMLRSHYQDAGLPQAFQILDSADQLALIK 122 >gi|150025612|ref|YP_001296438.1| hypothetical protein FP1561 [Flavobacterium psychrophilum JIP02/86] gi|149772153|emb|CAL43629.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 633 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 5/65 (7%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV----LEIITAWSH 91 +S AGSGKT+ LVQ V++ ++ + S + C+T+T AA E+ RV L + T Sbjct: 29 LSGGAGSGKTYSLVQ-VIKQVIEDNPTSKVACMTYTNAAVKEIEERVNHDNLNVTTIHDF 87 Query: 92 LSDEI 96 L D I Sbjct: 88 LWDNI 92 >gi|229821506|ref|YP_002883032.1| ATP-dependent DNA helicase PcrA [Beutenbergia cavernae DSM 12333] gi|229567419|gb|ACQ81270.1| ATP-dependent DNA helicase PcrA [Beutenbergia cavernae DSM 12333] Length = 829 Score = 43.1 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ LL A P +L +T T AAAEM RV ++ Sbjct: 79 IIAGAGSGKTRVLTHRIAYLLATRRARPGEILAITFTNKAAAEMRERVEALV 130 >gi|325687712|gb|EGD29733.1| exonuclease RexA [Streptococcus sanguinis SK72] Length = 1224 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 19/124 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++VQR++ +L S L T T AA E+ R+ L Sbjct: 45 VSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKERL------EKELGQA 98 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + AE +++ +HL + + P + T+ AF + ++ ++ + Sbjct: 99 LKEAESPELK------------QHLAQQLADLPNA-DIGTMDAFTQKVLSRYGYLLGLAP 145 Query: 156 HFAI 159 +F I Sbjct: 146 NFRI 149 >gi|325130511|gb|EGC53266.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis OX99.30304] Length = 670 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV E++ Sbjct: 20 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAEML 71 >gi|7007365|emb|CAB75588.1| putative DNA helicase [Prochlorococcus marinus str. PAC1] Length = 512 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 28/189 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+ PS++L +T T AA EM R LE+ Sbjct: 29 VVAGAGSGKTRALTHRIAHLITEYKVDPSSILAVTFTNKAAREMKDR-LEL--------- 78 Query: 95 EILSAEITKIQGKKPNKS-DMSKARHLLITI-LETPGGLKVQTIHAFCEAIMQ------Q 146 +L+ ++ + KP ++ +++ R + I E L + T HA +++ + Sbjct: 79 -LLAKRLSSLTHGKPWRALQVAEQREIRNRIHREISRELWIGTFHALFSRLLRFDIDKFK 137 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILEISNDEDIE 205 P T F+I DE ++ LI+E + LD E KK + I N + Sbjct: 138 DPEGLTWTKQFSIYDETDAQSLIKEI---VTQDLQLDPKRFEPKKVRWAISNAKN----Q 190 Query: 206 TLISDIISN 214 L+ D +SN Sbjct: 191 CLLPDDLSN 199 >gi|83719895|ref|YP_443754.1| ATP-dependent DNA helicase Rep [Burkholderia thailandensis E264] gi|83653720|gb|ABC37783.1| ATP-dependent DNA helicase Rep [Burkholderia thailandensis E264] Length = 848 Score = 43.1 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 175 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 223 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 224 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 269 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 270 PQFSIMDSDDCFGMIQEQIGTT 291 >gi|26554344|ref|NP_758278.1| ATP-dependent DNA helicase [Mycoplasma penetrans HF-2] gi|26454354|dbj|BAC44682.1| ATP-dependent DNA helicase [Mycoplasma penetrans HF-2] Length = 738 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 65/164 (39%), Gaps = 44/164 (26%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 D ++ + E + A D V A AGSGKT +L R + LL N +L T T Sbjct: 7 DSFNEKQYEAITAPDDV-PLMVIAGAGSGKTAVLTYRAVYLLNELNYVSDRILGFTFTNK 65 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++I PN+S + G Sbjct: 66 AANEMKDRITKVI----------------------PNRS------------FKYIG---- 87 Query: 134 QTIHAFCEAIMQQFPLEAN---ITSHFAIADEEQSKKLIEEAKK 174 T H+ C I+++ E N I S+F I DE+ +++E K Sbjct: 88 -TFHSVCLRILREDIKELNIGKINSNFTIIDEDDQNSILKEIYK 130 >gi|308183064|ref|YP_003927191.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter pylori PeCan4] gi|308065249|gb|ADO07141.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter pylori PeCan4] Length = 676 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 5/79 (6%) Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ + V A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65 Query: 78 MSHRVLEIITAWSHLSDEI 96 M RV +S LS +I Sbjct: 66 MIARV----AKYSKLSSKI 80 >gi|207092800|ref|ZP_03240587.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter pylori HPKX_438_AG0C1] Length = 574 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 5/79 (6%) Query: 19 QTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ ++ V A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKAALASKGHNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65 Query: 78 MSHRVLEIITAWSHLSDEI 96 M RV +S LS +I Sbjct: 66 MIARV----AKYSKLSSKI 80 >gi|167767205|ref|ZP_02439258.1| hypothetical protein CLOSS21_01724 [Clostridium sp. SS2/1] gi|167711180|gb|EDS21759.1| hypothetical protein CLOSS21_01724 [Clostridium sp. SS2/1] Length = 745 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 L+ Q +QL A T V A AGSGKT L R L+ P +LC+T T Sbjct: 32 LLCQLNQKQLEAVTSTEGFIRVIAGAGSGKTRALSHRFAFLVNEIGILPGNILCVTFTNK 91 Query: 74 AAAEMSHRVLEII 86 AA EM HR+ +I Sbjct: 92 AANEMRHRIHNLI 104 >gi|149923566|ref|ZP_01911966.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1] gi|149815585|gb|EDM75117.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1] Length = 693 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ R+ RL+ P ++ L+ T AA EM R+ +++ Sbjct: 23 VLAGAGSGKTRVITHRIARLMELGTQPEEIVALSFTNKAAEEMRERLAKMV 73 >gi|22537037|ref|NP_687888.1| exonuclease RexA [Streptococcus agalactiae 2603V/R] gi|81588583|sp|Q8E061|ADDA_STRA5 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|22533894|gb|AAM99760.1|AE014231_18 exonuclease RexA [Streptococcus agalactiae 2603V/R] Length = 1207 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 19/135 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L LL +L T T AA E+ R+ + I ++ Sbjct: 45 VSASAGSGKTFVMVERILDKLLRGVPIDSLFISTFTVKAAGELKERLEKKI------NES 98 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + SAE + + L L + T+ AF + I+ Q+ I+ Sbjct: 99 LKSAESDDL-------------KQFLTQQLVGIQTADIGTMDAFTQKIVNQYGYTLGISP 145 Query: 156 HFAIADEEQSKKLIE 170 F I ++ + +I+ Sbjct: 146 IFRILQDKNEQDVIK 160 >gi|15892547|ref|NP_360261.1| DNA helicase II [Rickettsia conorii str. Malish 7] gi|81595570|sp|Q92HZ6|UVRD_RICCN RecName: Full=Probable DNA helicase II homolog gi|15619709|gb|AAL03162.1| DNA helicase II [Rickettsia conorii str. Malish 7] Length = 653 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A AG+GKT +L R+ ++ N A P +L +T T AA EM+ RV +I + Sbjct: 29 AGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEMAERVNSLINCYG 82 >gi|220931077|ref|YP_002507985.1| ATP-dependent DNA helicase PcrA [Halothermothrix orenii H 168] gi|219992387|gb|ACL68990.1| ATP-dependent DNA helicase PcrA [Halothermothrix orenii H 168] Length = 715 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 63/161 (39%), Gaps = 40/161 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCL 68 S++ D+++ EQ A + + A AGSGKT +L R+ L+ +P +L + Sbjct: 3 SDSSDILTGLNPEQKKAVEHFEGPLLILAGAGSGKTRVLTHRIAYLIENYGVNPLQILAV 62 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV D +L Sbjct: 63 TFTNKAAGEMKERV-----------DNLLGG---------------------------MA 84 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 G L V T H+ C I+++ + ++F I D + +KLI Sbjct: 85 GDLWVSTFHSLCARILRKEIGKIGYDNNFVIFDTDDQQKLI 125 >gi|319791122|ref|YP_004152762.1| uvrd/rep helicase [Variovorax paradoxus EPS] gi|315593585|gb|ADU34651.1| UvrD/REP helicase [Variovorax paradoxus EPS] Length = 705 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 31/59 (52%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 +D R V A AGSGKT L RV L+ P LL LT ++ AA EM R +++ Sbjct: 44 ADDHRPLLVIAGAGSGKTSTLAHRVAHLIADGVDPQRLLLLTFSRRAAQEMERRAGQVL 102 >gi|288800251|ref|ZP_06405709.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 299 str. F0039] gi|288332464|gb|EFC70944.1| putative ATP-dependent DNA helicase [Prevotella sp. oral taxon 299 str. F0039] Length = 896 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 26/49 (53%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A V A G GKT IL R+ + LL P +LCLT T AA M R+ Sbjct: 22 ALVFAPPGCGKTQILTLRLQKALLHGVRPQDMLCLTFTNRAARGMLERI 70 >gi|114047350|ref|YP_737900.1| exodeoxyribonuclease V subunit beta [Shewanella sp. MR-7] gi|113888792|gb|ABI42843.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. MR-7] Length = 1269 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 65/158 (41%), Gaps = 15/158 (9%) Query: 20 TKSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LT 69 TK L DP S + A+AG+GKT+ + LRLLL + L C +T Sbjct: 2 TKVSPALPLDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGLSEPLNCEQILVVT 61 Query: 70 HTKAAAAEMSHRVLEIITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 T AA E+ R+ I L EI + + K P R + L++ Sbjct: 62 FTNAATEELRDRIRRRIQVAFKCFLGLEINDPFVQALYDKTPEAERAIALRRFDLA-LKS 120 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANI--TSHFAIADEE 163 + TIH FC+ I+ E+++ S F + D E Sbjct: 121 LDEAAIFTIHGFCQRILADLAFESSLLFESDFTLDDSE 158 >gi|76787847|ref|YP_329619.1| exonuclease RexA [Streptococcus agalactiae A909] gi|77406401|ref|ZP_00783461.1| reticulocyte binding protein [Streptococcus agalactiae H36B] gi|77410683|ref|ZP_00787042.1| reticulocyte binding protein [Streptococcus agalactiae CJB111] gi|123601917|sp|Q3K1I4|ADDA_STRA1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|76562904|gb|ABA45488.1| exonuclease RexA [Streptococcus agalactiae A909] gi|77163219|gb|EAO74171.1| reticulocyte binding protein [Streptococcus agalactiae CJB111] gi|77174992|gb|EAO77801.1| reticulocyte binding protein [Streptococcus agalactiae H36B] Length = 1207 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 19/135 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L LL +L T T AA E+ R+ + I ++ Sbjct: 45 VSASAGSGKTFVMVERILDKLLRGVPIDSLFISTFTVKAAGELKERLEKKI------NES 98 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + SAE + + L L + T+ AF + I+ Q+ I+ Sbjct: 99 LKSAESDDL-------------KQFLTQQLVGIQTADIGTMDAFTQKIVNQYGYTLGISP 145 Query: 156 HFAIADEEQSKKLIE 170 F I ++ + +I+ Sbjct: 146 IFRILQDKNEQDVIK 160 >gi|329943325|ref|ZP_08292099.1| ATP-dependent DNA helicase pcrA [Chlamydophila psittaci Cal10] gi|313848473|emb|CBY17477.1| DNA helicase II, UvrD [Chlamydophila psittaci RD1] gi|325507016|gb|ADZ18654.1| ATP-dependent DNA helicase [Chlamydophila psittaci 6BC] gi|328814872|gb|EGF84862.1| ATP-dependent DNA helicase pcrA [Chlamydophila psittaci Cal10] gi|328915165|gb|AEB55998.1| ATP-dependent helicase PcrA [Chlamydophila psittaci 6BC] Length = 637 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 L S+ Q+ A + P V A AG+GKT ++ R+L L+ P +L +T T A Sbjct: 2 LTSELNEAQVAAVTSPLSPILVLAGAGAGKTRVVTCRILHLINEGIAPKEILAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSD 94 A E+ R+L + +H SD Sbjct: 62 AKELKERILH-LCPQAHGSD 80 >gi|301165619|emb|CBW25190.1| putative helicase/endonuclease [Bacteriovorax marinus SJ] Length = 1106 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 94/206 (45%), Gaps = 46/206 (22%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-----------------LLANAHPSTL 65 EQ LA + T +SA AGSGKT +LV+ V+ L L ++ S + Sbjct: 7 EQKLAIEHTGGVLLSAGAGSGKTFVLVEHVIYLASKFISENKKDDLLEFELSIQSYFSKI 66 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 + +T TK AA E+ R++ + A+I ++ SD+ + + Sbjct: 67 VLMTFTKKAAGEIYERLIHRV-----------EAQIEYVE------SDI----EYWVVVK 105 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 + + TIH FC ++ Q L ++S AI E + ++ I S L +N+ Sbjct: 106 NAIDFMTISTIHGFCYKLIGQ-GLIPGLSSSVAIISESEYREKI-----SKLYERWFENH 159 Query: 186 -EELK-KAFYEILEISNDEDIETLIS 209 EE+ + F +I+ +++++ I +++S Sbjct: 160 IEEIPSEEFRKIISLNSNQIINSMLS 185 >gi|294794415|ref|ZP_06759551.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp. 3_1_44] gi|294454745|gb|EFG23118.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp. 3_1_44] Length = 862 Score = 43.1 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 74/184 (40%), Gaps = 40/184 (21%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79 + +Q + + ++ + A+AG+GKT+ L RV L+ A +LC+T T AA EM Sbjct: 5 REQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGGYAKAENILCMTFTNKAANEMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ ++ + P K+ ++V T H+F Sbjct: 65 GRIQSLVGS--------------------PAKA------------------VEVSTFHSF 86 Query: 140 CEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C I+QQ + + I DEE K+L E + L + N + K + + Sbjct: 87 CFFILQQEGKRNETLYTDVTIFDEEDCKELSEPYRPGKLREMSFANVIAMVKEYRSLYGF 146 Query: 199 SNDE 202 +D+ Sbjct: 147 YSDD 150 >gi|242279801|ref|YP_002991930.1| UvrD/REP helicase [Desulfovibrio salexigens DSM 2638] gi|242122695|gb|ACS80391.1| UvrD/REP helicase [Desulfovibrio salexigens DSM 2638] Length = 707 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 38/147 (25%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A+ P V A AGSGKT +V R+ L+ P ++L +T T+ AA EM R Sbjct: 16 ATHPQGPVLVIAGAGSGKTRTIVYRLAWLVEQGIPPESILLMTFTRKAAQEMLQR----- 70 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 ++ IL + QG T HAF ++++Q Sbjct: 71 ------TELILGRNLHGTQGG---------------------------TFHAFAYSVLRQ 97 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAK 173 E + + D S+ ++E K Sbjct: 98 NAAEIGFPNGITLMDRSDSEAAVKEVK 124 >gi|325201855|gb|ADY97309.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M01-240149] gi|325208393|gb|ADZ03845.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis NZ-05/33] Length = 671 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV E++ Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAEML 72 >gi|320529158|ref|ZP_08030250.1| ATP-dependent DNA helicase PcrA [Selenomonas artemidis F0399] gi|320138788|gb|EFW30678.1| ATP-dependent DNA helicase PcrA [Selenomonas artemidis F0399] Length = 747 Score = 43.1 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 31/56 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 + A AGSGKT +L R+ LL + P +L +T T AA EM RV +I +H Sbjct: 24 IVAGAGSGKTRVLTYRIANLLAHDVPPYRILAITFTNKAAREMRDRVDTLIGEAAH 79 >gi|296115176|ref|ZP_06833817.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769] gi|295978277|gb|EFG85014.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769] Length = 747 Score = 43.1 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 D +++ EQ A + T V A AG+GKT +L R +LL+ A P+ +L +T T Sbjct: 17 DYLARLNPEQRAAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLSGRARPNQILAVTFTN 76 Query: 73 AAAAEMSHRVLEIITA 88 AA EM RV ++ A Sbjct: 77 KAAREMRERVAGLLGA 92 >gi|157825751|ref|YP_001493471.1| DNA helicase II [Rickettsia akari str. Hartford] gi|157799709|gb|ABV74963.1| DNA helicase II [Rickettsia akari str. Hartford] Length = 653 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A AG+GKT +L R+ ++ N A P +L +T T AA EM+ RV +I + Sbjct: 29 AGAGTGKTKVLTSRIANIIHKNLAPPQNILAVTFTNKAAKEMAERVNSLINCYG 82 >gi|315022895|gb|EFT35919.1| ATP-dependent DNA helicase UvrD/PcrA [Riemerella anatipestifer RA-YM] gi|325336848|gb|ADZ13122.1| Superfamily I DNA and RNA helicase [Riemerella anatipestifer RA-GD] Length = 779 Score = 43.1 bits (100), Expect = 0.032, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ P +L LT T AA EM R+ +++ Sbjct: 25 VLAGAGSGKTRVLTMRIAHLITNGVDPFNILALTFTNKAAREMKERIAKVV 75 >gi|317180239|dbj|BAJ58025.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter pylori F32] Length = 676 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 5/79 (6%) Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ + V A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65 Query: 78 MSHRVLEIITAWSHLSDEI 96 M RV +S LS +I Sbjct: 66 MIARV----AKYSKLSSKI 80 >gi|239813731|ref|YP_002942641.1| UvrD/REP helicase [Variovorax paradoxus S110] gi|239800308|gb|ACS17375.1| UvrD/REP helicase [Variovorax paradoxus S110] Length = 701 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 38/141 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT ++ ++ RL+ A P + +T T AA+EM R +I Sbjct: 22 VLAGAGSGKTRVITHKIGRLIQAGLEPKRIAAITFTNKAASEMRERAKGLIG-------- 73 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +A+H++I T HA +M++ + Sbjct: 74 -------------------REAKHVVIC-----------TFHALGVRMMREDGAVLGLKP 103 Query: 156 HFAIADEEQSKKLIEEAKKST 176 F+I D + K++++A +T Sbjct: 104 AFSILDSDDVTKILKDAGGTT 124 >gi|207743840|ref|YP_002260232.1| dna helicase II protein (partial sequence n terminus) [Ralstonia solanacearum IPO1609] gi|206595240|emb|CAQ62167.1| probable dna helicase II protein (partial sequence n terminus) [Ralstonia solanacearum IPO1609] Length = 166 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A + P SA + A AGSGKT +L R+ L+ ++ PS +L +T T Sbjct: 3 DLLAHLNPEQRAAVTLPDESALILAGAGSGKTRVLTTRIAWLVQSSRVSPSGVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM+ R+ Sbjct: 63 KAAKEMTARL 72 >gi|299145467|ref|ZP_07038535.1| putative UvrD/REP helicase domain protein [Bacteroides sp. 3_1_23] gi|298515958|gb|EFI39839.1| putative UvrD/REP helicase domain protein [Bacteroides sp. 3_1_23] Length = 1056 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + D+ Sbjct: 9 ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDKD 67 Query: 97 LSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A + +I+ + K + A L +L +V+TI +F +++M+ E ++ Sbjct: 68 SEAYLNRIKEETGKTEQEIREAAGVALSYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127 Query: 155 SHFAI 159 + I Sbjct: 128 PNLNI 132 >gi|296157515|ref|ZP_06840350.1| UvrD/REP helicase [Burkholderia sp. Ch1-1] gi|295892287|gb|EFG72070.1| UvrD/REP helicase [Burkholderia sp. Ch1-1] Length = 696 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AA EM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAALEMRERV-----------G 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E ST Sbjct: 117 PQFSIMDSDDCFGMIQEQVGST 138 >gi|109947811|ref|YP_665039.1| ATP-dependent DNA helicase [Helicobacter acinonychis str. Sheeba] gi|109715032|emb|CAK00040.1| ATP-dependent DNA helicase [Helicobacter acinonychis str. Sheeba] Length = 672 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 5/79 (6%) Query: 19 QTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ + + A+AG+GKT +V R+L LL P +L LT T A++E Sbjct: 6 QLNPEQLKAASALQGHNLIIASAGTGKTSTIVGRILHLLDNGIKPEEILLLTFTNKASSE 65 Query: 78 MSHRVLEIITAWSHLSDEI 96 M RV +S LS +I Sbjct: 66 MIARV----AKYSKLSSKI 80 >gi|91785713|ref|YP_560919.1| ATP-dependent DNA helicase Rep [Burkholderia xenovorans LB400] gi|91689667|gb|ABE32867.1| ATP-dependent DNA helicase Rep [Burkholderia xenovorans LB400] Length = 696 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AA EM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAALEMRERV-----------G 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E ST Sbjct: 117 PQFSIMDSDDCFGMIQEQVGST 138 >gi|312866102|ref|ZP_07726323.1| UvrD/REP helicase [Streptococcus downei F0415] gi|311098506|gb|EFQ56729.1| UvrD/REP helicase [Streptococcus downei F0415] Length = 451 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 20/147 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L L + L T T AA E+ R+ ++ Sbjct: 48 VSASAGSGKTFVMVERILDRLKRGDSINQLFISTFTVKAAGELKERL-----------EK 96 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 L+ EI SD++ +H L L + T+ AF + ++ + I+ Sbjct: 97 KLTQEIAAT-------SDLTLKQH-LSEQLANLATADIGTMDAFSQKLVNTYGYSLGISP 148 Query: 156 HFAI-ADEEQSKKLIEEAKKSTLASIM 181 +F I D+ + L +E AS M Sbjct: 149 NFRILQDQSEQASLKKEVYDDLFASYM 175 >gi|212640059|ref|YP_002316579.1| ATP-dependent DNA helicase [Anoxybacillus flavithermus WK1] gi|212561539|gb|ACJ34594.1| ATP-dependent DNA helicase [Anoxybacillus flavithermus WK1] Length = 603 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCL 68 ++E ++ I K EQ A S V A GSGKT +L ++LRLL P L C+ Sbjct: 4 YNEKLNQIKSDK-EQYEAYLSEDSTVVIAGPGSGKTTVLTLKILRLLKEYIRPPRGLACV 62 Query: 69 THTKAAAAEMSHRV 82 T +KAAA E+ R+ Sbjct: 63 TFSKAAAKEIKDRL 76 >gi|160886083|ref|ZP_02067086.1| hypothetical protein BACOVA_04090 [Bacteroides ovatus ATCC 8483] gi|156108896|gb|EDO10641.1| hypothetical protein BACOVA_04090 [Bacteroides ovatus ATCC 8483] Length = 1056 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + D+ Sbjct: 9 ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDKD 67 Query: 97 LSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A + +I+ + K + A L +L +V+TI +F +++M+ E ++ Sbjct: 68 SEAYLNRIKEETGKTEQEIREAAGVALSYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127 Query: 155 SHFAI 159 + I Sbjct: 128 PNLNI 132 >gi|78045143|ref|YP_359945.1| ATP-dependent DNA helicase PcrA [Carboxydothermus hydrogenoformans Z-2901] gi|77997258|gb|ABB16157.1| ATP-dependent DNA helicase PcrA [Carboxydothermus hydrogenoformans Z-2901] Length = 718 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AG+GKT +L R+ LL A+P +L +T T AA EM RV +I+ Sbjct: 25 VLAGAGTGKTRVLTFRIAHLLYRKMAYPHEILAITFTNKAAREMKERVERLISG 78 >gi|127513058|ref|YP_001094255.1| exodeoxyribonuclease V, beta subunit [Shewanella loihica PV-4] gi|126638353|gb|ABO23996.1| exodeoxyribonuclease V, beta subunit [Shewanella loihica PV-4] Length = 1223 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 10/137 (7%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEII--TA 88 + A+AG+GKT+ + +RLLL ++ + L C +T T AA E+ R+ + I Sbjct: 19 IEASAGTGKTYTIAGLYVRLLLGDSQRAPLSCEQILVVTFTNAATQELRDRIRKKIQLAY 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + L E+ I + + ++ S+A L L++ + TIH FC+ I+ Sbjct: 79 RAFLGMEVDDPLINTLYSEAEPEA-RSQALKRLDLALKSLDEAAIFTIHGFCQRILSDMA 137 Query: 149 LEANI--TSHFAIADEE 163 E+++ S F + D E Sbjct: 138 FESSLLFESEFTLDDSE 154 >gi|323705998|ref|ZP_08117568.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium xylanolyticum LX-11] gi|323534612|gb|EGB24393.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium xylanolyticum LX-11] Length = 716 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 40/138 (28%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT +L R+ L+ N P+ ++ +T T AA EM RV Sbjct: 26 AGAGSGKTRVLTHRIAYLVREKNVSPANIIAITFTNKAAKEMKDRVE------------- 72 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 ++L G L V T H+ C I+++ + + Sbjct: 73 --------------------------SLLGYVGDLWVSTFHSACVRILRRDIEKIGYDRN 106 Query: 157 FAIADEEQSKKLIEEAKK 174 F I D + K LI + K Sbjct: 107 FVIYDTQDQKTLISDCIK 124 >gi|319410695|emb|CBY91074.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis WUE 2594] Length = 671 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV E++ Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAEML 72 >gi|260592441|ref|ZP_05857899.1| ATP-dependent DNA helicase [Prevotella veroralis F0319] gi|260535487|gb|EEX18104.1| ATP-dependent DNA helicase [Prevotella veroralis F0319] Length = 843 Score = 43.1 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 10/82 (12%) Query: 16 LISQTKSEQLLASDPTRS----------AWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 + Q + EQ+LA+ T + V A AGSGKT +L ++ LL P + Sbjct: 1 MTDQEREEQILATLNTSQREAVEYCTGPSLVIAGAGSGKTRVLTYKIAYLLSRGLKPWNI 60 Query: 66 LCLTHTKAAAAEMSHRVLEIIT 87 L LT T AA EM R+ ++ + Sbjct: 61 LALTFTNKAAREMKERIAQVTS 82 >gi|260170417|ref|ZP_05756829.1| ATP-dependent helicase [Bacteroides sp. D2] gi|315918773|ref|ZP_07915013.1| ATP-dependent helicase [Bacteroides sp. D2] gi|313692648|gb|EFS29483.1| ATP-dependent helicase [Bacteroides sp. D2] Length = 1056 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + D+ Sbjct: 9 ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDKD 67 Query: 97 LSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A + +I+ + K + A L +L +V+TI +F +++M+ E ++ Sbjct: 68 SEAYLNRIKEETGKTEQEIREAAGVALSYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127 Query: 155 SHFAI 159 + I Sbjct: 128 PNLNI 132 >gi|187925846|ref|YP_001897488.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN] gi|187717040|gb|ACD18264.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN] Length = 696 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AA EM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAALEMRERV-----------G 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E ST Sbjct: 117 PQFSIMDSDDCFGMIQEQVGST 138 >gi|77407976|ref|ZP_00784726.1| reticulocyte binding protein [Streptococcus agalactiae COH1] gi|77173434|gb|EAO76553.1| reticulocyte binding protein [Streptococcus agalactiae COH1] Length = 1207 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 19/144 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L LL +L T T AA E+ R+ + I ++ Sbjct: 45 VSASAGSGKTFVMVERILDKLLRGVPIESLFISTFTVKAAGELKERLEKKI------NES 98 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + SAE + + L L + T+ AF + I+ Q+ I+ Sbjct: 99 LKSAESDDL-------------KQFLTQQLVGIQTADIGTMDAFTQKIVNQYGYTLGISP 145 Query: 156 HFAIADEEQSKKLIEEAKKSTLAS 179 F I ++ + +I+ + L S Sbjct: 146 IFRILQDKNEQDVIKNEVYADLFS 169 >gi|251767077|ref|ZP_02265907.2| ATP-dependent DNA helicase Rep [Burkholderia mallei PRL-20] gi|243063896|gb|EES46082.1| ATP-dependent DNA helicase Rep [Burkholderia mallei PRL-20] Length = 738 Score = 43.1 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 60 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 108 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 109 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 154 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 155 PQFSIMDSDDCFGMIQEQIGTT 176 >gi|116628401|ref|YP_821020.1| ATP-dependent exoDNAse beta subunit [Streptococcus thermophilus LMD-9] gi|122267004|sp|Q03IZ8|ADDA_STRTD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116101678|gb|ABJ66824.1| DNA helicase/exodeoxyribonuclease V, subunit A [Streptococcus thermophilus LMD-9] Length = 1217 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 19/124 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L ++ L T T AA E+ R+ + +T HL Sbjct: 45 VSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELKERLEKRLT--KHLG-- 100 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +++ + R L + G + T+ AF + ++ Q+ ++ Sbjct: 101 ---------------QAETDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSP 145 Query: 156 HFAI 159 F I Sbjct: 146 TFRI 149 >gi|329770175|ref|ZP_08261566.1| hypothetical protein HMPREF0433_01330 [Gemella sanguinis M325] gi|328837076|gb|EGF86718.1| hypothetical protein HMPREF0433_01330 [Gemella sanguinis M325] Length = 1221 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 31/130 (23%) Query: 30 PTRSAW-----------VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAE 77 PT W V+A AGSGKT +L +R+ R + + +L LT T AAA Sbjct: 18 PTPPQWQAISITGADILVAAAAGSGKTEVLSERIARKVACDRWDIDKMLVLTFTTAAAKN 77 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ IT + +L+ E+ + ++ + K R L+ L V TI Sbjct: 78 MLVRIENKIT------ERLLATEL------EEDRLFLRKQRMLMNNAL-------VTTID 118 Query: 138 AFCEAIMQQF 147 +FC +++++F Sbjct: 119 SFCLSVLKKF 128 >gi|327438551|dbj|BAK14916.1| superfamily I DNA and RNA helicase [Solibacillus silvestris StLB046] Length = 752 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L++ +PS +L +T T AA EM R+ I+ Sbjct: 29 IMAGAGSGKTRVLTHRIAYLVVEREVYPSKILAITFTNKAAREMRERIDGIL 80 >gi|255034727|ref|YP_003085348.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053] gi|254947483|gb|ACT92183.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053] Length = 932 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 4/75 (5%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHT 71 +++ T +Q S+ ++ + A AGSGKT + ++ LLL A P ++ T+T Sbjct: 1 MLNFTPDQQRAISENDKNLRIIACAGSGKTSTVAAKITHLLLGENNAAVEPRNIIAFTYT 60 Query: 72 KAAAAEMSHRVLEII 86 + AAAE+ ++VL+ I Sbjct: 61 EKAAAELRNKVLKTI 75 >gi|326384946|ref|ZP_08206620.1| exodeoxyribonuclease V [Gordonia neofelifaecis NRRL B-59395] gi|326196336|gb|EGD53536.1| exodeoxyribonuclease V [Gordonia neofelifaecis NRRL B-59395] Length = 1123 Score = 43.1 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 24/148 (16%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM---SH-RVLEI 85 P R+ + A+AG+GKT+ +V +R + + LL T + AA+AE+ +H R+ E Sbjct: 17 PDRTLVLEASAGTGKTYAIVALAVRYIAHGVPVADLLMATFSNAASAELRDRTHSRLTEC 76 Query: 86 ITAW-----SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 ++A + SD+ L A + + +++ + R L L + T H FC Sbjct: 77 VSALADPEAARTSDDDLVAFLA-----DADVAEVVRRREYLTDALSDFDAATMATTHTFC 131 Query: 141 EAIM----------QQFPLEANITSHFA 158 ++ QQFP+ N+ A Sbjct: 132 NRMLAVLGFLGGRQQQFPILENVDEMVA 159 >gi|319744909|gb|EFV97242.1| ATP-dependent nuclease subunit A [Streptococcus agalactiae ATCC 13813] Length = 1208 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 19/135 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L LL +L T T AA E+ R+ + I ++ Sbjct: 46 VSASAGSGKTFVMVERILDKLLRGVPIESLFISTFTVKAAGELKERLEKKI------NES 99 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + SAE + + L L + T+ AF + I+ Q+ I+ Sbjct: 100 LKSAESDDL-------------KQFLTQQLVGIQTADIATMDAFTQKIVNQYGYTLGISP 146 Query: 156 HFAIADEEQSKKLIE 170 F I ++ + +I+ Sbjct: 147 IFRILQDKNEQDVIK 161 >gi|313896178|ref|ZP_07829731.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 137 str. F0430] gi|312974977|gb|EFR40439.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 137 str. F0430] Length = 747 Score = 43.1 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 31/56 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 + A AGSGKT +L R+ LL + P +L +T T AA EM RV +I +H Sbjct: 24 IVAGAGSGKTRVLTYRIANLLAHDVPPYRILAITFTNKAAREMRDRVDTLIGEAAH 79 >gi|293369068|ref|ZP_06615665.1| UvrD/REP helicase [Bacteroides ovatus SD CMC 3f] gi|292635836|gb|EFF54331.1| UvrD/REP helicase [Bacteroides ovatus SD CMC 3f] Length = 1056 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + D+ Sbjct: 9 ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDKD 67 Query: 97 LSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A + +I+ + K + A L +L +V+TI +F +++M+ E ++ Sbjct: 68 SEAYLNRIKEETGKTEQEIREAAGVALSYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127 Query: 155 SHFAI 159 + I Sbjct: 128 PNLNI 132 >gi|47459324|ref|YP_016186.1| ATP-dependent DNA helicase [Mycoplasma mobile 163K] gi|47458654|gb|AAT27975.1| ATP-dependent DNA helicase [Mycoplasma mobile 163K] Length = 723 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 E SE L S K ++L + A AGSGKT +LV ++ L+ N P +L Sbjct: 2 EKSEKNLLDSLNKDQKLAVVFNDSPLRIIAGAGSGKTRVLVHKIAYLIQKMNVKPYQILA 61 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSA 99 +T T AA EM R+ ++ +H S+ ++S Sbjct: 62 VTFTNKAANEMKERIKTLVD--NHESEPLIST 91 >gi|315221764|ref|ZP_07863678.1| ATP-dependent nuclease subunit A [Streptococcus anginosus F0211] gi|315189150|gb|EFU22851.1| ATP-dependent nuclease subunit A [Streptococcus anginosus F0211] Length = 1237 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLSD 94 VSA+AGSGKT ++VQR++ +L L T T AA+E+ R+ E+ A D Sbjct: 56 VSASAGSGKTFVMVQRIVDQILRGVRIDQLFISTFTVKAASELKERLEKELSKALKATDD 115 Query: 95 EILSAEITKIQGKKPN 110 E L + + PN Sbjct: 116 EELKQHLAQQLADIPN 131 >gi|298505014|gb|ADI83737.1| ATP-dependent helicase, UvrD superfamily [Geobacter sulfurreducens KN400] Length = 680 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 11/84 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE---------- 84 V A AGSGKT ++ R+ L+L P ++L +T T AA EM RV E Sbjct: 24 VLAGAGSGKTRVITCRIGHLVLHRKVAPESILAVTFTNKAAGEMKERVRELVGQGRTKGM 83 Query: 85 IITAWSHLSDEILSAEITKIQGKK 108 I++ + L IL +I ++ K+ Sbjct: 84 IVSTFHSLGVRILRRDIERLGYKR 107 >gi|212709835|ref|ZP_03317963.1| hypothetical protein PROVALCAL_00883 [Providencia alcalifaciens DSM 30120] gi|212687646|gb|EEB47174.1| hypothetical protein PROVALCAL_00883 [Providencia alcalifaciens DSM 30120] Length = 692 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 5/81 (6%) Query: 3 YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61 YH+ FQ I+ S+ L + + V A AGSGKT +LV R LLL A Sbjct: 193 YHDFFQ----NIESSPLNYSQSLSVINGEDNVLVLAGAGSGKTSVLVARAGWLLLRELAK 248 Query: 62 PSTLLCLTHTKAAAAEMSHRV 82 P +L L + AAAEM+ R+ Sbjct: 249 PEQILLLAFGRKAAAEMNERI 269 >gi|77360798|ref|YP_340373.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Pseudoalteromonas haloplanktis TAC125] gi|76875709|emb|CAI86930.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Pseudoalteromonas haloplanktis TAC125] Length = 1213 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 26/142 (18%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLL-------ANA---HP---STLLCLTHTKAAAAE 77 T + + A+AG+GKT+ + LR LL AN+ P +L +T T AA E Sbjct: 12 TGQSLIEASAGTGKTYTITGLYLRYLLGMQIADDANSLLNKPLSVEQILVVTFTDAATQE 71 Query: 78 MSHRVL-EIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + RV IITA L DE+++ I + D +A LL ++ Sbjct: 72 IKDRVRNRIITARDALLGQDPKDELIAGVIAAV-------DDKHRAFDLLDAAAKSMDEA 124 Query: 132 KVQTIHAFCEAIMQQFPLEANI 153 + TIH FC+ +++Q E+ + Sbjct: 125 AIFTIHGFCQRMLKQHAFESGV 146 >gi|326405601|gb|ADZ62672.1| ATP-dependent nuclease, subunit A [Lactococcus lactis subsp. lactis CV56] Length = 1203 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 23/177 (12%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 ++ VSA+AGSGKT ++ QR++ + L T TK AA+E+ R Sbjct: 19 KNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAASELRMR---------- 68 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 L ++ K + SD ++AR L + L+ + T+ +F + + + Sbjct: 69 -----LERDLKKA---RQESSDENQARRLTLA-LQNLSNADIGTMDSFTQKLTKTNFNRV 119 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL---KKAFYEILE-ISNDEDI 204 NI +F I ++ LI + L L ++ L K+ F E+++ S D +I Sbjct: 120 NIDPNFRILADQTESDLIRQEVFEQLVESYLSEDDGLNISKEKFEELIKNFSKDRNI 176 >gi|313205710|ref|YP_004044887.1| uvrd/rep helicase [Riemerella anatipestifer DSM 15868] gi|312445026|gb|ADQ81381.1| UvrD/REP helicase [Riemerella anatipestifer DSM 15868] Length = 779 Score = 43.1 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ P +L LT T AA EM R+ +++ Sbjct: 25 VLAGAGSGKTRVLTMRIAHLITNGVDPFNILALTFTNKAAREMKERIAKVV 75 >gi|291519610|emb|CBK74831.1| Superfamily I DNA and RNA helicases [Butyrivibrio fibrisolvens 16/4] Length = 565 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 V A GSGKT +L QRV L+ + + +L +T TKAAA EM R Sbjct: 20 VIAGPGSGKTAVLTQRVKELINSGVPANEVLVITFTKAAAIEMKER 65 >gi|256844935|ref|ZP_05550393.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_36A2] gi|256718494|gb|EEU32049.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_36A2] Length = 737 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 39/145 (26%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 AS S + A AGSGKT + R+ ++ P ++L +T T AA EM RV E+ Sbjct: 17 ASQIDGSILILAGAGSGKTRTITYRIAHMIENVGISPYSILAVTFTNKAAKEMRERVEEL 76 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + +++KA + T H+F +++ Sbjct: 77 V-------------------------GNIAKA-------------CTISTFHSFGMRLLR 98 Query: 146 QFPLEANITSHFAIADEEQSKKLIE 170 + E S+F I D + K++++ Sbjct: 99 MYAKEVEYNSNFTIYDTDDQKRIVK 123 >gi|237716370|ref|ZP_04546851.1| ATP-dependent helicase [Bacteroides sp. D1] gi|262407972|ref|ZP_06084520.1| ATP-dependent helicase [Bacteroides sp. 2_1_22] gi|294644255|ref|ZP_06722024.1| UvrD/REP helicase [Bacteroides ovatus SD CC 2a] gi|294807965|ref|ZP_06766744.1| UvrD/REP helicase [Bacteroides xylanisolvens SD CC 1b] gi|229444017|gb|EEO49808.1| ATP-dependent helicase [Bacteroides sp. D1] gi|262354780|gb|EEZ03872.1| ATP-dependent helicase [Bacteroides sp. 2_1_22] gi|292640419|gb|EFF58668.1| UvrD/REP helicase [Bacteroides ovatus SD CC 2a] gi|294444849|gb|EFG13537.1| UvrD/REP helicase [Bacteroides xylanisolvens SD CC 1b] Length = 1056 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + D+ Sbjct: 9 ASAGSGKTFTLAVEYIKLLIFNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDKD 67 Query: 97 LSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A + +I+ + K + A L +L +V+TI +F +++M+ E ++ Sbjct: 68 SEAYLNRIKEETGKTEQEIREAAGVALNYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127 Query: 155 SHFAI 159 + I Sbjct: 128 PNLNI 132 >gi|90408773|ref|ZP_01216918.1| putative ATP-dependent DNA helicase Rep [Psychromonas sp. CNPT3] gi|90310117|gb|EAS38257.1| putative ATP-dependent DNA helicase Rep [Psychromonas sp. CNPT3] Length = 722 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 39/144 (27%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86 S P ++ V A AGSGKT +L R+ LL P+ +L +T T AA EM R+ Sbjct: 19 SCPQQNMLVLAGAGSGKTRVLTHRIAWLLEVEHIPTYGILAVTFTNKAAKEMRARI---- 74 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + I +I+ G+ + T H +++ Sbjct: 75 -------NAICPQQIS---------------------------GMWIGTFHGIAHRLLRL 100 Query: 147 FPLEANITSHFAIADEEQSKKLIE 170 EAN+ HF I D + +K+I+ Sbjct: 101 HFQEANLPEHFQIIDSDDQQKMIK 124 >gi|242371786|ref|ZP_04817360.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis M23864:W1] gi|242350487|gb|EES42088.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis M23864:W1] Length = 729 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ +EQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LVKNMNTEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63 Query: 74 AAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 64 AAKEMKQRVEQLV 76 >gi|226226951|ref|YP_002761057.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27] gi|226090142|dbj|BAH38587.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27] Length = 820 Score = 43.1 bits (100), Expect = 0.034, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 34 AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A V A AGSGKT +L R+ RL+ N P +L +T T AA EM R+ + + Sbjct: 44 ALVLAGAGSGKTRVLTTRIARLIGTMNVAPHEILAVTFTNKAAGEMRARIAKFL 97 >gi|320449643|ref|YP_004201739.1| ATP-dependent DNA helicase PcrA [Thermus scotoductus SA-01] gi|320149812|gb|ADW21190.1| ATP-dependent DNA helicase PcrA [Thermus scotoductus SA-01] Length = 708 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 A V A AGSGKT +V RV L+ PS +L +T T AA EM R+ ++ Sbjct: 31 PALVVAGAGSGKTRTVVHRVAYLIAKRGVFPSEILAVTFTNKAAEEMRERLKRMVKGGGE 90 Query: 92 L 92 L Sbjct: 91 L 91 >gi|295397183|ref|ZP_06807286.1| ATP-dependent DNA helicase PcrA [Aerococcus viridans ATCC 11563] gi|294974572|gb|EFG50296.1| ATP-dependent DNA helicase PcrA [Aerococcus viridans ATCC 11563] Length = 856 Score = 43.1 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 55/140 (39%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ +L + +P +L +T T AA EM RV ++ Sbjct: 42 IMAGAGSGKTRVLTHRMAYILSEKDVNPWNILAITFTNKAAKEMKERVSALV-------- 93 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P+ +DM V T HA C I+++ T Sbjct: 94 -------------GPDANDMW-----------------VSTFHAMCVRILRREAEAIGFT 123 Query: 155 SHFAIADEEQSKKLIEEAKK 174 F IAD + + LI+ K Sbjct: 124 RSFTIADPSEQQTLIKRIIK 143 >gi|217969625|ref|YP_002354859.1| UvrD/REP helicase [Thauera sp. MZ1T] gi|217506952|gb|ACK53963.1| UvrD/REP helicase [Thauera sp. MZ1T] Length = 744 Score = 43.1 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 L+S EQL A S P + A + A AGSGKT +L R+ L+ + P+ +L +T T Sbjct: 4 LLSNLNPEQLQAVSLPAQHALILAGAGSGKTRVLTTRIAWLIQSGQVDPAGILAVTFTNK 63 Query: 74 AAAEMSHRV 82 AA EM R+ Sbjct: 64 AAKEMLARL 72 >gi|315634405|ref|ZP_07889692.1| excision endonuclease subunit UvrD [Aggregatibacter segnis ATCC 33393] gi|315476995|gb|EFU67740.1| excision endonuclease subunit UvrD [Aggregatibacter segnis ATCC 33393] Length = 724 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + +E +D ++ + E + S P + V A AGSGKT +L R+ L+ + +++ Sbjct: 2 DFAELLDGLNDKQREAV--SAPLGNYLVLAGAGSGKTRVLTHRIAWLIGVEGVSEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEII 86 +T T AAAEM HR+ ++ Sbjct: 60 VTFTNKAAAEMRHRIESVL 78 >gi|152991783|ref|YP_001357504.1| putative recombination protein RecB [Sulfurovum sp. NBC37-1] gi|151423644|dbj|BAF71147.1| ATP-dependent DNA helicase, UvrD/REP family [Sulfurovum sp. NBC37-1] Length = 911 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 13/164 (7%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 SA+AGSGKT L R + LL ++L T T AAAEM RV++ + HL + Sbjct: 10 SASAGSGKTFALSVRYISLLFMGEPAGSILAATFTNKAAAEMRQRVVD---SLRHLGENK 66 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 + +++ K +L L + + T+ +F I++ LE + Sbjct: 67 AFLDAIEVETGMSRDVLFRKQPEVLKRFLSSTS--HIVTLDSFFSKILRSASLELGLEPD 124 Query: 157 FAIAD---EEQSKKLIEEAKK----STLASIMLD-NNEELKKAF 192 F + EE K ++E S L + +D ++ KK F Sbjct: 125 FVTKEQPKEELEKHFLDEVDANGMLSDLVKLAMDIEDKRFKKIF 168 >gi|325475282|gb|EGC78467.1| UvrD/Rep family ATP-dependent DNA helicase [Treponema denticola F0402] Length = 1128 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 29/138 (21%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 +++ ++A AGSGKT +L R + ++ ++ LT T+ AAAEM R+ + Sbjct: 24 KNSVIAAGAGSGKTKVLAARYVYFVVEKGVSVEKIIALTFTEKAAAEMHKRIYNELKKID 83 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 H PN + + HL K+ TI +FC I + Sbjct: 84 H-----------------PNARNAIEKFHL----------AKISTIDSFCNRIARDACKS 116 Query: 151 ANITSHFAIADEEQSKKL 168 I+ F I D +S+KL Sbjct: 117 FGISPDF-IIDNAESEKL 133 >gi|55823610|ref|YP_142051.1| ATP-dependent exonuclease subunit A [Streptococcus thermophilus CNRZ1066] gi|81558977|sp|Q5LY80|ADDA_STRT1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|55739595|gb|AAV63236.1| ATP-dependent exonuclease, subunit A [Streptococcus thermophilus CNRZ1066] Length = 1217 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 19/124 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L ++ L T T AA E+ R+ + +T HL Sbjct: 45 VSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELKERLEKRLT--KHLG-- 100 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +++ + R L + G + T+ AF + ++ Q+ ++ Sbjct: 101 ---------------QAETDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSP 145 Query: 156 HFAI 159 F I Sbjct: 146 TFRI 149 >gi|254445124|ref|ZP_05058600.1| UvrD/REP helicase domain protein [Verrucomicrobiae bacterium DG1235] gi|198259432|gb|EDY83740.1| UvrD/REP helicase domain protein [Verrucomicrobiae bacterium DG1235] Length = 1170 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 11/128 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTL---LCLTHTKAAAAEMSHRVLEIITAWSHL 92 + A+AG+GKT+ L + L+L L H TL L +T T+AA E++ R+ ++ Sbjct: 11 IEASAGTGKTYRLCRIALQLTLQ--HGITLDRILAVTFTEAATEELASRIQKLYQGCLRE 68 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE------AIMQQ 146 + E ++ K D+ +A++ L LE + TIH+FC+ A+ Q Sbjct: 69 LETGDPKEDVLLECLKSEDFDVERAKNALRYSLEVFDEAPISTIHSFCKRCLELVALETQ 128 Query: 147 FPLEANIT 154 PL+A ++ Sbjct: 129 NPLDAELS 136 >gi|55821688|ref|YP_140130.1| ATP-dependent exonuclease subunit A [Streptococcus thermophilus LMG 18311] gi|81560167|sp|Q5M2T7|ADDA_STRT2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|55737673|gb|AAV61315.1| ATP-dependent exonuclease, subunit A [Streptococcus thermophilus LMG 18311] Length = 1217 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 19/124 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L ++ L T T AA E+ R+ + +T HL Sbjct: 45 VSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELKERLEKRLT--KHLG-- 100 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +++ + R L + G + T+ AF + ++ Q+ ++ Sbjct: 101 ---------------QAETDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSP 145 Query: 156 HFAI 159 F I Sbjct: 146 TFRI 149 >gi|72162979|ref|YP_290636.1| ATP-dependent DNA helicase PcrA [Thermobifida fusca YX] gi|71916711|gb|AAZ56613.1| ATP-dependent DNA helicase PcrA [Thermobifida fusca YX] Length = 754 Score = 43.1 bits (100), Expect = 0.035, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 38/136 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL PS +L +T T AAAEM RV Sbjct: 28 IIAGAGSGKTRVLTHRIAYLLAERGVRPSEVLAITFTNKAAAEMKERV------------ 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++ G++ T + V T H+ C I+++ Sbjct: 76 -------ERLLGER------------------TASAMWVMTFHSACVRILRREAARLGYP 110 Query: 155 SHFAIADEEQSKKLIE 170 S F I D S++L++ Sbjct: 111 SSFTIYDSADSQRLMQ 126 >gi|325293426|ref|YP_004279290.1| DNA helicase II [Agrobacterium sp. H13-3] gi|325061279|gb|ADY64970.1| DNA helicase II [Agrobacterium sp. H13-3] Length = 824 Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 13 TIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 T D +S EQ A + A V A AG+GKT +L R+ +L A+PS +L +T Sbjct: 49 TPDYLSGLNPEQREAVETLDGAVLVLAGAGTGKTRVLTTRIAHILATGRAYPSQILAVTF 108 Query: 71 TKAAAAEMSHRV 82 T AA EM R+ Sbjct: 109 TNKAAREMKERI 120 >gi|320581966|gb|EFW96185.1| DNA helicase and DNA-dependent ATPase [Pichia angusta DL-1] Length = 775 Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 36/167 (21%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +D +++ + + AS P V A G+GKT ++ RV LLL + P ++ T TK Sbjct: 5 VDDLNEHQRAAVTAS-PNGVVLVLAGPGTGKTKVITARVAYLLLHHKLPPQDVVVATFTK 63 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + + A+ LLI Sbjct: 64 KAANEMVERLAVLLQPYPEID-----------------------AKKLLIG--------- 91 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 T H+ C I++++ + + F IADE +K+LI++ ++ S Sbjct: 92 --TFHSICVRILRKYGGLVGLNTGFKIADETDAKQLIKKVLRAMAES 136 >gi|291295632|ref|YP_003507030.1| Exodeoxyribonuclease V [Meiothermus ruber DSM 1279] gi|290470591|gb|ADD28010.1| Exodeoxyribonuclease V [Meiothermus ruber DSM 1279] Length = 833 Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 31/150 (20%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHR 81 EQ A + V A AG+GKTH++ R L L+ P ++ +T T+ AA E+ R Sbjct: 6 EQRAAVEHDGPVAVEAGAGTGKTHLMAHRYLWLVEHKGFSPLEIVAVTFTEKAARELRAR 65 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + L ++ + +++ + T+H+ Sbjct: 66 VRRV------LQGQVAPERVYEVEAA------------------------PIGTLHSLAA 95 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEE 171 I Q++P EA + F I DE +S + E Sbjct: 96 RICQEYPEEAGVHPAFRILDEVESALWLSE 125 >gi|254194688|ref|ZP_04901119.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei S13] gi|254298751|ref|ZP_04966202.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 406e] gi|157808603|gb|EDO85773.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 406e] gi|169651438|gb|EDS84131.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei S13] Length = 733 Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 60 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 108 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 109 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 154 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 155 PQFSIMDSDDCFGMIQEQIGTT 176 >gi|121533515|ref|ZP_01665343.1| ATP-dependent DNA helicase PcrA [Thermosinus carboxydivorans Nor1] gi|121308074|gb|EAX48988.1| ATP-dependent DNA helicase PcrA [Thermosinus carboxydivorans Nor1] Length = 733 Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 23/47 (48%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L R+ LL P +L +T T AAAEM RV Sbjct: 25 VLAGAGSGKTRVLTCRIAYLLEQGVRPYNILAITFTNKAAAEMRERV 71 >gi|52425423|ref|YP_088560.1| DNA-dependent helicase II [Mannheimia succiniciproducens MBEL55E] gi|52307475|gb|AAU37975.1| UvrD protein [Mannheimia succiniciproducens MBEL55E] Length = 727 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 37/154 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLT 69 SE +D ++ + E + A P + V A AGSGKT +L R+ L+ +++ +T Sbjct: 5 SELLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIAVEGISEGSIMAVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ ++ S +R L Sbjct: 63 FTNKAAAEMRQRIESTLSQHS--------------------------SRRLF-------- 88 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE 163 G+ V T H+ +++ L+AN+ F I D E Sbjct: 89 GMWVGTFHSIAHRLLRAHYLDANLPQDFQILDSE 122 >gi|27905008|ref|NP_778134.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|32129937|sp|Q89A21|REP_BUCBP RecName: Full=ATP-dependent DNA helicase rep gi|27904406|gb|AAO27239.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 670 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 38/135 (28%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT +++ +++ L+ + + P + +T T AA EM R+L +++ Sbjct: 22 AGAGSGKTRVIINKIVHLIKICHFDPKCITAITFTNKAACEMKSRILNVLSV-------- 73 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 N S++ +K+ T HA I++ NI S+ Sbjct: 74 -------------NVSNL----------------VKISTFHALGLEIIKSEIELLNIKSN 104 Query: 157 FAIADEEQSKKLIEE 171 F I DE+ +++E Sbjct: 105 FTIFDEQDQISILQE 119 >gi|229826040|ref|ZP_04452109.1| hypothetical protein GCWU000182_01404 [Abiotrophia defectiva ATCC 49176] gi|229789782|gb|EEP25896.1| hypothetical protein GCWU000182_01404 [Abiotrophia defectiva ATCC 49176] Length = 618 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 23/90 (25%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII------- 86 V A GSGKT ++ RV R LL P T+L +T TKAAA EM R ++++ Sbjct: 20 VLAGPGSGKTAVITGRV-RYLLEEMKIAPQTILVITFTKAAAMEMKERFVKLMGEPKGVQ 78 Query: 87 -------------TAWSHLSDEILSAEITK 103 ++ + D+I++ E+T+ Sbjct: 79 FATFHSVFFMILRVSYGYGVDQIITEEMTR 108 >gi|89893464|ref|YP_516951.1| hypothetical protein DSY0718 [Desulfitobacterium hafniense Y51] gi|89332912|dbj|BAE82507.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 1631 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 +R V+A GSGKT ILV ++ LLL + LL +T ++AAA E R+L++I Sbjct: 1091 SRHIVVAAGPGSGKTRILVHKLAALLLMEDVKTEQLLMVTFSRAAAHEFKKRLLKLIGNT 1150 Query: 90 SH 91 +H Sbjct: 1151 AH 1152 >gi|327474835|gb|EGF20240.1| exonuclease RexA [Streptococcus sanguinis SK408] Length = 1224 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 39/183 (21%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++VQR++ +L S L T T AA E+ R Sbjct: 45 VSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKER-------------- 90 Query: 96 ILSAEITKIQGKKPNKSDMSKAR-HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + K G+ ++D + + HL + + P + T+ AF + ++ ++ + Sbjct: 91 -----LEKELGQALKEADSPELKQHLAQQLADLPNA-DIGTMDAFTQKVLSRYGYLLGLA 144 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN 214 +F I +S ++L N + F ++ + D + + L S ++ N Sbjct: 145 PNFRIL-------------QSASEQLILQN-----EVFSQVFDRYYDSERQALFSSLVKN 186 Query: 215 RTA 217 T Sbjct: 187 FTG 189 >gi|295084357|emb|CBK65880.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Bacteroides xylanisolvens XB1A] Length = 1056 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + D+ Sbjct: 9 ASAGSGKTFTLAVEYIKLLIFNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDKD 67 Query: 97 LSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A + +I+ + K + A L +L +V+TI +F +++M+ E ++ Sbjct: 68 SEAYLNRIKEETGKTEQEIREAAGIALSYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127 Query: 155 SHFAI 159 + I Sbjct: 128 PNLNI 132 >gi|121608662|ref|YP_996469.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2] gi|121553302|gb|ABM57451.1| ATP-dependent DNA helicase UvrD [Verminephrobacter eiseniae EF01-2] Length = 793 Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKA 73 L+ EQL A + P A + A AGSGKT +L R+ LL +A P ++L +T T Sbjct: 17 LLVHLNPEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQNGHARPGSILAVTFTNK 76 Query: 74 AAAEMSHRV 82 AA EM R+ Sbjct: 77 AAKEMVARL 85 >gi|146298462|ref|YP_001193053.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101] gi|146152880|gb|ABQ03734.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101] Length = 1052 Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 13/139 (9%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 P+ S + A+AGSGKT+ LV+ L+++L+ N +L +T T A EM R I+ Sbjct: 4 PSFSIY-DASAGSGKTYTLVKEYLKIILSSPKNDAYRNILAITFTNKAVHEMKSR---IV 59 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFC 140 + S + E SA+ + + +S K++ ++ ++ + TI F Sbjct: 60 GSLSEFAKEEPSAKAVDLMEDLSRDTGLSIIQLKVKSQSIIKHLIHNYAAFDISTIDKFT 119 Query: 141 EAIMQQFPLEANITSHFAI 159 +++ F + N+ F + Sbjct: 120 HKVIRAFAHDLNLPMTFEV 138 >gi|78186859|ref|YP_374902.1| exodeoxyribonuclease V, beta subunit [Chlorobium luteolum DSM 273] gi|78166761|gb|ABB23859.1| Exodeoxyribonuclease V, beta subunit [Chlorobium luteolum DSM 273] Length = 1203 Score = 43.1 bits (100), Expect = 0.036, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH-LS 93 + A+AG+GKTH + LRL++ + P ++L +T+T+AA+ E+ R+ + I H L Sbjct: 18 IEASAGTGKTHAIGSLYLRLVVEESLLPDSILVVTYTEAASGELRGRIRDRIRDTLHALR 77 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 D S + G + +A L L + V TIHAFC +Q E+ Sbjct: 78 DPQCSQQALLEIGSAAVAVGVEEAARRLEGALGSFDTAAVHTIHAFCLRALQDHAFES 135 >gi|219851287|ref|YP_002465719.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c] gi|219545546|gb|ACL15996.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c] Length = 1019 Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 40/130 (30%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A + + + A GSGKT ++ +++L LL P+ +L LT ++ AAAEM+ R Sbjct: 7 QQTAVENAGTQLILAGPGSGKTRVITEKILHLLDHGVPPTEILALTFSEKAAAEMNDR-- 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 I+ K+PN L++ T H+FC + Sbjct: 65 --------------------IEMKRPNLD------------------LEIHTFHSFCLEV 86 Query: 144 MQQFPLEANI 153 +Q L + + Sbjct: 87 LQDNMLSSGL 96 >gi|76809077|ref|YP_331538.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710b] gi|76578530|gb|ABA48005.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710b] Length = 733 Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A P + +T T AAAEM RV Sbjct: 60 VLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEMRERV-----------G 108 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 109 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 154 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E +T Sbjct: 155 PQFSIMDSDDCFGMIQEQIGTT 176 >gi|67459079|ref|YP_246703.1| DNA helicase II [Rickettsia felis URRWXCal2] gi|75536488|sp|Q4ULN5|UVRD_RICFE RecName: Full=Probable DNA helicase II homolog gi|67004612|gb|AAY61538.1| DNA helicase II [Rickettsia felis URRWXCal2] Length = 654 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A AG+GKT +L R+ ++ N A P +L +T T AA EM+ RV +I + Sbjct: 30 AGAGTGKTKVLTSRIANIVHQNLASPQNILAVTFTNKAAKEMAERVNSLINCYG 83 >gi|309388624|gb|ADO76504.1| UvrD/REP helicase [Halanaerobium praevalens DSM 2228] Length = 805 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 53/245 (21%), Positives = 95/245 (38%), Gaps = 74/245 (30%) Query: 3 YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62 YH+ F + E +++ + E ++ + R V A AG+GKT +L R+ L+ P Sbjct: 37 YHDLFHNYGEYP--LNRKQQEAVVKN--QRYNQVIAAAGTGKTTVLAYRIKYLIEEGIEP 92 Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122 + +L +T++ AA EM R+ E IT++ Sbjct: 93 ARILAITYSNKAAEEMQIRLKEKFN-------------ITEVN----------------- 122 Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 V TIH+F +I+++ E+N + D ++EE + L Sbjct: 123 ----------VNTIHSFANSIVKE---ESNYK--LSTVDPNDITNIVEEG-----YNQFL 162 Query: 183 DNNEELKKAFYEILEISNDE--------------------DIETLISDIISNRTALKLIF 222 ++++E + FY+ L +DE ETL + + +R + Sbjct: 163 NSSQEFRGYFYKFLSHQDDEYLDEADFEEKTEYLAAMRTKKYETLKGEKVRSRAEKAIAD 222 Query: 223 FFFSY 227 FFF Y Sbjct: 223 FFFLY 227 >gi|110004261|emb|CAK98599.1| putative atp-dependent dna helicase pcra protein [Spiroplasma citri] Length = 730 Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 5/78 (6%) Query: 11 SETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68 +E I+ ++ + E +LA + P R + A AGSGKT I+ ++ L+ AN P + + Sbjct: 3 NEFIENLNPNQREAVLAITGPVR---IIAGAGSGKTRIITNKIAYLIKYANLQPWRICAV 59 Query: 69 THTKAAAAEMSHRVLEII 86 T T A EM R++++I Sbjct: 60 TFTNKATNEMKTRIVDMI 77 >gi|114564558|ref|YP_752072.1| DNA-dependent helicase II [Shewanella frigidimarina NCIMB 400] gi|114335851|gb|ABI73233.1| ATP-dependent DNA helicase UvrD [Shewanella frigidimarina NCIMB 400] Length = 727 Score = 43.1 bits (100), Expect = 0.037, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +L R+ L+ + P ++L +T Sbjct: 4 SSLLDGLNDKQREAVGA--PLSNMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61 Query: 70 HTKAAAAEMSHRVLEII 86 T AAAEM RV +++ Sbjct: 62 FTNKAAAEMRERVEKVV 78 >gi|317476225|ref|ZP_07935476.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA] gi|316907636|gb|EFV29339.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA] Length = 760 Score = 42.7 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 37/139 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT +L ++ LL + P +L LT T AA EM R+ Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLENDYQPWNILALTFTNKAAREMKERI------------- 71 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + + +ARHL + T H+ I+ ++ TS Sbjct: 72 -------------ARQVGVERARHLWMG-----------TFHSIFLRILHAEAVQIGFTS 107 Query: 156 HFAIADEEQSKKLIEEAKK 174 F I D SK L+ K Sbjct: 108 RFTIYDTADSKSLLRSIIK 126 >gi|301052870|ref|YP_003791081.1| ATP-dependent DNA helicase [Bacillus anthracis CI] gi|300375039|gb|ADK03943.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str. CI] Length = 688 Score = 42.7 bits (99), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|189218921|ref|YP_001939562.1| ATP-dependent DNA helicase UvrD/PcrA [Methylacidiphilum infernorum V4] gi|189185779|gb|ACD82964.1| ATP-dependent DNA helicase UvrD/PcrA [Methylacidiphilum infernorum V4] Length = 636 Score = 42.7 bits (99), Expect = 0.037, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 51/140 (36%), Gaps = 38/140 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 P V A AGSGKT L RV L+ +P +L T T AA EM +RV Sbjct: 19 PLGPILVIAGAGSGKTRTLTYRVAYLIEKGINPGRILLATFTNKAAREMLNRV------- 71 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 D +++ + ++I G T H C I++ Sbjct: 72 ----DRLVNTDTSQIWGG---------------------------TFHHLCHKILRNHAK 100 Query: 150 EANITSHFAIADEEQSKKLI 169 +F I D E S +L+ Sbjct: 101 TIGFEQNFTIIDREDSIQLL 120 >gi|118497371|ref|YP_898421.1| DNA/RNA helicase superfamily I protein [Francisella tularensis subsp. novicida U112] gi|195536061|ref|ZP_03079068.1| UvrD/REP helicase family protein [Francisella tularensis subsp. novicida FTE] gi|208779165|ref|ZP_03246511.1| UvrD/REP helicase family protein [Francisella novicida FTG] gi|118423277|gb|ABK89667.1| DNA and RNA helicases Superfamily I protein [Francisella novicida U112] gi|194372538|gb|EDX27249.1| UvrD/REP helicase family protein [Francisella tularensis subsp. novicida FTE] gi|208744965|gb|EDZ91263.1| UvrD/REP helicase family protein [Francisella novicida FTG] Length = 688 Score = 42.7 bits (99), Expect = 0.037, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 38/65 (58%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 ++++ D + A VSA AGSGKT L+ R+ L+ P+ +L L + K+A + + R+ Sbjct: 8 QKIINHDIAKHALVSAVAGSGKTQTLIARIEYLISNQVAPNKILVLMYNKSAQLDFATRL 67 Query: 83 LEIIT 87 +++ Sbjct: 68 KKVLN 72 >gi|34580461|ref|ZP_00141941.1| DNA helicase II [Rickettsia sibirica 246] gi|28261846|gb|EAA25350.1| DNA helicase II [Rickettsia sibirica 246] Length = 653 Score = 42.7 bits (99), Expect = 0.037, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A AG+GKT +L R+ ++ N A P +L +T T AA EM+ RV ++ + Sbjct: 29 AGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEMAERVNSLVNCYG 82 >gi|300727000|ref|ZP_07060420.1| putative DNA helicase [Prevotella bryantii B14] gi|299775723|gb|EFI72313.1| putative DNA helicase [Prevotella bryantii B14] Length = 1563 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V+A GSGKT +LV ++ LLL + LL LT ++AAA E R++ ++ +H D Sbjct: 1061 VAAGPGSGKTRVLVHKLASLLLLEDVKHEQLLMLTFSRAAATEFKKRLIALVGNAAHFVD 1120 >gi|240850877|ref|YP_002972277.1| DNA helicase II [Bartonella grahamii as4aup] gi|240268000|gb|ACS51588.1| DNA helicase II [Bartonella grahamii as4aup] Length = 779 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 2/87 (2%) Query: 4 HNSFQEHSETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AH 61 H ++ S D + Q EQ A T V A AG+GKT +L R+ +L + A Sbjct: 30 HTLKEQKSYNTDYLKQLNPEQQQAVMNTEGPLLVLAGAGTGKTRVLTTRISHILRSGLAS 89 Query: 62 PSTLLCLTHTKAAAAEMSHRVLEIITA 88 P +L +T T AA EM R+ E+I Sbjct: 90 PQQILAVTFTNKAAREMKTRIGELIGG 116 >gi|134302306|ref|YP_001122275.1| UvrD/REP helicase [Francisella tularensis subsp. tularensis WY96-3418] gi|134050083|gb|ABO47154.1| UvrD/REP helicase [Francisella tularensis subsp. tularensis WY96-3418] Length = 688 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 38/65 (58%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 ++++ D + A VSA AGSGKT L+ R+ L+ P+ +L L + K+A + + R+ Sbjct: 8 QKIINHDIAKHALVSAVAGSGKTQTLIARIGYLVSNQVAPNKILVLMYNKSAQLDFATRL 67 Query: 83 LEIIT 87 +++ Sbjct: 68 KKVLN 72 >gi|91205500|ref|YP_537855.1| DNA helicase II [Rickettsia bellii RML369-C] gi|122425652|sp|Q1RIP8|UVRD_RICBR RecName: Full=Probable DNA helicase II homolog gi|91069044|gb|ABE04766.1| DNA helicase II [Rickettsia bellii RML369-C] Length = 653 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A AG+GKT +L R+ ++ N A P +L +T T AA EM RV +++++ Sbjct: 29 AGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEMQERVHNLVSSYG 82 >gi|328676858|gb|AEB27728.1| ATP-dependent DNA helicase UvrD/PcrA/Rep family [Francisella cf. novicida Fx1] Length = 688 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 38/65 (58%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 ++++ D + A VSA AGSGKT L+ R+ L+ P+ +L L + K+A + + R+ Sbjct: 8 QKIINHDIAKHALVSAVAGSGKTQTLIARIEYLISNQVAPNKILVLMYNKSAQLDFATRL 67 Query: 83 LEIIT 87 +++ Sbjct: 68 KKVLN 72 >gi|329960510|ref|ZP_08298898.1| UvrD/REP helicase [Bacteroides fluxus YIT 12057] gi|328532740|gb|EGF59527.1| UvrD/REP helicase [Bacteroides fluxus YIT 12057] Length = 1156 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 8/130 (6%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA-W--SHLS 93 A+AGSGKT L ++ L+ N +L +T T A AEM R+L+ + W S Sbjct: 82 ASAGSGKTFTLAVEYIKHLILNPRAYRQILAVTFTNKATAEMKERILQQLYGIWKSDPAS 141 Query: 94 DEILS---AEITKIQGKKPNKSDM-SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + LS E+ +I G + +++ +A L +L +V+TI +F +++M+ Sbjct: 142 EAYLSRIQEELKRIDGGTLDTAEIRQRAGMALQYMLHDYSRFRVETIDSFFQSVMRNLAR 201 Query: 150 EANITSHFAI 159 E ++ + I Sbjct: 202 ELELSPNLNI 211 >gi|325918664|ref|ZP_08180765.1| DNA/RNA helicase, superfamily I [Xanthomonas vesicatoria ATCC 35937] gi|325535114|gb|EGD07009.1| DNA/RNA helicase, superfamily I [Xanthomonas vesicatoria ATCC 35937] Length = 770 Score = 42.7 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 35/63 (55%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + +A+ T A VSA AG+GKT LV+R RL+ S +LCL + K A + S Sbjct: 6 TDEQIAVANHVTGHALVSAVAGAGKTTTLVERCRRLIATGIPESQILCLQYNKEAQLDFS 65 Query: 80 HRV 82 R+ Sbjct: 66 SRL 68 >gi|317502900|ref|ZP_07960997.1| ATP-dependent helicase [Prevotella salivae DSM 15606] gi|315665983|gb|EFV05553.1| ATP-dependent helicase [Prevotella salivae DSM 15606] Length = 1075 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 8/148 (5%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWS-HLSDE 95 A+AGSGKT L + + LL+ N L +T T A EM R+L + S L++ Sbjct: 9 ASAGSGKTFTLAVQYITLLVENPQAYRHTLAVTFTNKATEEMKMRILSQLYGISVGLNES 68 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 E K K+ ++ A + L ++ +V+TI AF + +++ E +T+ Sbjct: 69 KPYLECVKQLSGLDEKTIIANAGYALRELIHHYSYFRVETIDAFFQTVLRNLARELELTA 128 Query: 156 HFAI------ADEEQSKKLIEEAKKSTL 177 + I +++ +LIE+ S+L Sbjct: 129 NLRIELNDEQVEQQAVDQLIEDLNDSSL 156 >gi|255691765|ref|ZP_05415440.1| ATP-dependent helicase [Bacteroides finegoldii DSM 17565] gi|260622481|gb|EEX45352.1| ATP-dependent helicase [Bacteroides finegoldii DSM 17565] Length = 1056 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 6/126 (4%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + D Sbjct: 9 ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDRD 67 Query: 97 LSAEITKIQGKKPNKSDM---SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 A + +I+ K+ +++ A L +L +V+TI +F +++M+ E + Sbjct: 68 SQAYLDRIK-KETGRAEQEIREAAGVALGYMLHDYSRFRVETIDSFFQSVMRNLARELEL 126 Query: 154 TSHFAI 159 + + I Sbjct: 127 SPNLNI 132 >gi|171743075|ref|ZP_02918882.1| hypothetical protein BIFDEN_02201 [Bifidobacterium dentium ATCC 27678] gi|283455915|ref|YP_003360479.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1] gi|171278689|gb|EDT46350.1| hypothetical protein BIFDEN_02201 [Bifidobacterium dentium ATCC 27678] gi|283102549|gb|ADB09655.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1] Length = 885 Score = 42.7 bits (99), Expect = 0.038, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ LL S +L +T T AAAEM R+ I+ Sbjct: 44 IGAGAGSGKTRVLTRRIAWLLAHGIWASQILAITFTNKAAAEMRERLAAIV 94 >gi|254372735|ref|ZP_04988224.1| hypothetical protein FTCG_00303 [Francisella tularensis subsp. novicida GA99-3549] gi|151570462|gb|EDN36116.1| hypothetical protein FTCG_00303 [Francisella novicida GA99-3549] Length = 688 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 38/65 (58%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 ++++ D + A VSA AGSGKT L+ R+ L+ P+ +L L + K+A + + R+ Sbjct: 8 QKIINHDIAKHALVSAVAGSGKTQTLIARIEYLISNQVAPNKILVLMYNKSAQLDFATRL 67 Query: 83 LEIIT 87 +++ Sbjct: 68 KKVLN 72 >gi|327489960|gb|EGF21749.1| exonuclease RexA [Streptococcus sanguinis SK1058] Length = 1224 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 39/183 (21%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++VQR++ +L S L T T AA E+ R Sbjct: 45 VSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKER-------------- 90 Query: 96 ILSAEITKIQGKKPNKSDMSKAR-HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + K G+ ++D + + HL + + P + T+ AF + ++ ++ + Sbjct: 91 -----LEKELGQALKEADSPELKQHLAQQLADLPNA-DIGTMDAFTQKVLSRYGYLLGLA 144 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN 214 +F I +S ++L N + F ++ + D + + L S ++ N Sbjct: 145 PNFRIL-------------QSASEQLILQN-----EVFSQVFDRYYDSERQALFSSLVKN 186 Query: 215 RTA 217 T Sbjct: 187 FTG 189 >gi|325694960|gb|EGD36865.1| exonuclease RexA [Streptococcus sanguinis SK150] Length = 1224 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 29/47 (61%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 VSA+AGSGKT ++VQR++ +L S L T T AA E+ R+ Sbjct: 45 VSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKERL 91 >gi|228471345|ref|ZP_04056146.1| ATP-dependent DNA helicase PcrA [Porphyromonas uenonis 60-3] gi|228306846|gb|EEK15959.1| ATP-dependent DNA helicase PcrA [Porphyromonas uenonis 60-3] Length = 778 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 39/73 (53%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 +DL + +++++ A V A AGSGKT ++ ++ L+ +P L LT T Sbjct: 2 VDLTALNEAQRVAVVYNEGPALVIAGAGSGKTRVITYKLAHLVDQGWNPQRLYALTFTNK 61 Query: 74 AAAEMSHRVLEII 86 AA EM RV E++ Sbjct: 62 AAGEMRSRVSEML 74 >gi|254374192|ref|ZP_04989674.1| hypothetical protein FTDG_00355 [Francisella novicida GA99-3548] gi|151571912|gb|EDN37566.1| hypothetical protein FTDG_00355 [Francisella novicida GA99-3548] Length = 688 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 38/65 (58%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 ++++ D + A VSA AGSGKT L+ R+ L+ P+ +L L + K+A + + R+ Sbjct: 8 QKIINHDIAKHALVSAVAGSGKTQTLIARIEYLISNQVAPNKILVLMYNKSAQLDFATRL 67 Query: 83 LEIIT 87 +++ Sbjct: 68 KKVLN 72 >gi|324994711|gb|EGC26624.1| exonuclease RexA [Streptococcus sanguinis SK678] Length = 1224 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 39/183 (21%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++VQR++ +L S L T T AA E+ R Sbjct: 45 VSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKER-------------- 90 Query: 96 ILSAEITKIQGKKPNKSDMSKAR-HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + K G+ ++D + + HL + + P + T+ AF + ++ ++ + Sbjct: 91 -----LEKELGQALKEADSPELKQHLAQQLADLPNA-DIGTMDAFTQKVLSRYGYLLGLA 144 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN 214 +F I +S ++L N + F ++ + D + + L S ++ N Sbjct: 145 PNFRIL-------------QSASEQLILQN-----EVFSQVFDRYYDSERQALFSSLVKN 186 Query: 215 RTA 217 T Sbjct: 187 FTG 189 >gi|261337326|ref|ZP_05965210.1| ATP-dependent DNA helicase PcrA [Bifidobacterium gallicum DSM 20093] gi|270277699|gb|EFA23553.1| ATP-dependent DNA helicase PcrA [Bifidobacterium gallicum DSM 20093] Length = 878 Score = 42.7 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ +Q LA + A + A AGSGKT +L +R+ +L A PS +L +T T Sbjct: 13 ELVGDLNEQQALAVQYSGPALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 72 Query: 73 AAAAEMSHRVLEII 86 AAAEM R+ +I Sbjct: 73 KAAAEMRERLEALI 86 >gi|167622483|ref|YP_001672777.1| DNA-dependent helicase II [Shewanella halifaxensis HAW-EB4] gi|167352505|gb|ABZ75118.1| DNA helicase II [Shewanella halifaxensis HAW-EB4] Length = 721 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 70/177 (39%), Gaps = 45/177 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P +L +T Sbjct: 4 SSLLDGLNDKQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYAILAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV K+ G +MS+ Sbjct: 62 FTNKAAKEMRERV-------------------EKVAG-----GNMSR------------- 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + + T H +++ +AN+ F I D + +LI K L S+ LD + Sbjct: 85 -MWIGTFHGLAHRLLRTHYKDANLPESFQILDSDDQLRLI----KRILKSLNLDEKQ 136 >gi|154488221|ref|ZP_02029338.1| hypothetical protein BIFADO_01795 [Bifidobacterium adolescentis L2-32] gi|154083372|gb|EDN82417.1| hypothetical protein BIFADO_01795 [Bifidobacterium adolescentis L2-32] Length = 1371 Score = 42.7 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 38/157 (24%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT+ + +R++ L+ P +L LT T+ AA+E+ RV Sbjct: 53 VVAGAGSGKTYTMTRRIITLIDQGISPEKILGLTFTRKAASELLSRV------------- 99 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 SA +T+ Q + + K +V T AF + I++Q+ L Sbjct: 100 --SAAVTRNQAGRGTRVAFLKP--------------EVSTYDAFFQTIVRQYGL------ 137 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + +Q+ + + EA L +LD + + AF Sbjct: 138 ---LVGFDQNTQPLSEAGALQLIHTVLDKHMDQLMAF 171 >gi|119026323|ref|YP_910168.1| ATP-dependent DNA helicase [Bifidobacterium adolescentis ATCC 15703] gi|118765907|dbj|BAF40086.1| widely conserved ATP-dependent DNA helicase [Bifidobacterium adolescentis ATCC 15703] Length = 1356 Score = 42.7 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 38/157 (24%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT+ + +R++ L+ P +L LT T+ AA+E+ RV Sbjct: 43 VVAGAGSGKTYTMTRRIITLIDQGISPEKILGLTFTRKAASELLSRV------------- 89 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 SA +T+ Q + + K +V T AF + I++Q+ L Sbjct: 90 --SAAVTRNQAGRGTRVAFLKP--------------EVSTYDAFFQTIVRQYGL------ 127 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + +Q+ + + EA L +LD + + AF Sbjct: 128 ---LVGFDQNTQPLSEAGALQLIHTVLDKHMDQLMAF 161 >gi|116493117|ref|YP_804852.1| ATP-dependent DNA helicase PcrA [Pediococcus pentosaceus ATCC 25745] gi|116103267|gb|ABJ68410.1| ATP-dependent DNA helicase PcrA [Pediococcus pentosaceus ATCC 25745] Length = 757 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 59/149 (39%), Gaps = 43/149 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L RV L+ +P +L +T T AA EM RV S L D Sbjct: 27 IMAGAGSGKTRVLTHRVAYLIEEKGVNPWNVLAITFTNKAAREMRERVT------SLLGD 80 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E +AEI V T HA C I+++ + Sbjct: 81 E--AAEIW------------------------------VSTFHALCVRILRRNIDQLGYN 108 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLD 183 F+IAD + + L+ K LA + D Sbjct: 109 RAFSIADPSEQRTLV----KHILADLNYD 133 >gi|48478317|ref|YP_024023.1| ATP-dependent DNA helicase [Picrophilus torridus DSM 9790] gi|48430965|gb|AAT43830.1| ATP-dependent DNA helicase [Picrophilus torridus DSM 9790] Length = 852 Score = 42.7 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 + AN G+GKT + + V RL+ PS++LC+T T A EM R+ Sbjct: 6 IIANPGTGKTMTIAESVARLIFNGEDPSSILCITFTNRAVDEMRSRI 52 >gi|327463228|gb|EGF09549.1| exonuclease RexA [Streptococcus sanguinis SK1] Length = 1224 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 29/47 (61%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 VSA+AGSGKT ++VQR++ +L S L T T AA E+ R+ Sbjct: 45 VSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKERL 91 >gi|324993970|gb|EGC25889.1| exonuclease RexA [Streptococcus sanguinis SK405] Length = 1224 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 39/183 (21%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++VQR++ +L S L T T AA E+ R Sbjct: 45 VSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKER-------------- 90 Query: 96 ILSAEITKIQGKKPNKSDMSKAR-HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + K G+ ++D + + HL + + P + T+ AF + ++ ++ + Sbjct: 91 -----LEKELGQALKEADSPELKQHLAQQLADLPNA-DIGTMDAFTQKVLSRYGYLLGLA 144 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN 214 +F I +S ++L N + F ++ + D + + L S ++ N Sbjct: 145 PNFRIL-------------QSASEQLILQN-----EVFSQVFDRYYDSERQALFSSLVKN 186 Query: 215 RTA 217 T Sbjct: 187 FTG 189 >gi|317495616|ref|ZP_07953983.1| UvrD/REP helicase [Gemella moribillum M424] gi|316914235|gb|EFV35714.1| UvrD/REP helicase [Gemella moribillum M424] Length = 1214 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 54/130 (41%), Gaps = 31/130 (23%) Query: 30 PTRSAW-----------VSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAAAE 77 PT + W V+A AGSGKT +L +R+ R + L LL LT T AAA Sbjct: 18 PTSAQWQAIALTGADVLVAAAAGSGKTEVLSERIARKVALDRWDIDKLLVLTFTTAAAKN 77 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV IT E L A S + K R L + V TI Sbjct: 78 MLVRVENKIT-------ERLLA------------SGLEKDRLFLRKQSMLMNDVYVSTID 118 Query: 138 AFCEAIMQQF 147 +FC I+++F Sbjct: 119 SFCLNILRKF 128 >gi|157960297|ref|YP_001500331.1| DNA-dependent helicase II [Shewanella pealeana ATCC 700345] gi|157845297|gb|ABV85796.1| DNA helicase II [Shewanella pealeana ATCC 700345] Length = 721 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 70/177 (39%), Gaps = 45/177 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P +L +T Sbjct: 4 SSLLDGLNDKQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYAILAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV K+ G +MS+ Sbjct: 62 FTNKAAKEMRERV-------------------EKVAG-----GNMSR------------- 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + + T H +++ +AN+ F I D + +LI K L S+ LD + Sbjct: 85 -MWIGTFHGLAHRLLRTHYKDANLPESFQILDSDDQLRLI----KRILKSLNLDEKQ 136 >gi|323345466|ref|ZP_08085689.1| ATP-dependent DNA helicase PcrA [Prevotella oralis ATCC 33269] gi|323093580|gb|EFZ36158.1| ATP-dependent DNA helicase PcrA [Prevotella oralis ATCC 33269] Length = 790 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 29/51 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L ++ LL + P +L LT T AA EM R+ +I Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLHSGMKPWNILALTFTNKAANEMKSRIGNLI 75 >gi|229171974|ref|ZP_04299539.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus MM3] gi|228611317|gb|EEK68574.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus MM3] Length = 688 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|224282901|ref|ZP_03646223.1| UvrD/REP helicase [Bifidobacterium bifidum NCIMB 41171] gi|313140060|ref|ZP_07802253.1| ATP-dependent DNA helicase PcrA [Bifidobacterium bifidum NCIMB 41171] gi|313132570|gb|EFR50187.1| ATP-dependent DNA helicase PcrA [Bifidobacterium bifidum NCIMB 41171] Length = 885 Score = 42.7 bits (99), Expect = 0.039, Method: Composition-based stats. Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 10/82 (12%) Query: 15 DLISQTKSEQLLASDPTRSAWVS---------ANAGSGKTHILVQRVLRLLLA-NAHPST 64 DLI+++ E + +P ++ V A AGSGKT +L +R+ +L A PS Sbjct: 6 DLIARSAEELVGDLNPQQAEAVQYRGPALLIGAGAGSGKTRVLTRRIAWILTQFGAWPSQ 65 Query: 65 LLCLTHTKAAAAEMSHRVLEII 86 +L +T T AAAEM R+ +I Sbjct: 66 ILAITFTNKAAAEMRERLEGLI 87 >gi|118475254|ref|YP_891891.1| ATP-dependent DNA helicase PcrA [Campylobacter fetus subsp. fetus 82-40] gi|118414480|gb|ABK82900.1| ATP-dependent DNA helicase PcrA [Campylobacter fetus subsp. fetus 82-40] Length = 685 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 67/167 (40%), Gaps = 38/167 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L S KS++ AS + + A AGSGKT + R+ L+ + P L LT T A Sbjct: 5 LDSLNKSQKEAASHIDGAMLILAGAGSGKTKTITTRLAYLISVVGIDPLNTLTLTFTNKA 64 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+ M HR A S L+ I S+ + + Sbjct: 65 ASTMKHR------ALSMLNSNISSSPL-------------------------------LC 87 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 T H F ++ + E + F I D + KK+I+E + S AS++ Sbjct: 88 TFHKFGLLFLKFYINELGRKNSFVIIDTDDKKKIIKEFESSVAASVI 134 >gi|94987114|ref|YP_595047.1| superfamily I DNA/RNA helicase [Lawsonia intracellularis PHE/MN1-00] gi|94731363|emb|CAJ54726.1| Superfamily I DNA and RNA helicases [Lawsonia intracellularis PHE/MN1-00] Length = 711 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 18 SQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 S S QL A + P V A AGSGKT ++ R+ L PS++L LT T+ A+ Sbjct: 5 STLNSAQLEAVTAPDGPVLVIAGAGSGKTRTIIYRLAWLAEQGIPPSSMLLLTFTRKASQ 64 Query: 77 EMSHR 81 EM HR Sbjct: 65 EMLHR 69 >gi|313668563|ref|YP_004048847.1| ATP-dependent DNA helicase [Neisseria lactamica ST-640] gi|313006025|emb|CBN87484.1| ATP-dependent DNA helicase [Neisseria lactamica 020-06] Length = 671 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 74/187 (39%), Gaps = 49/187 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKMLP------- 73 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 KP GL + T HA I+++ Sbjct: 74 -------------KPQTR-----------------GLTICTFHALGMKILREEANHIGYK 103 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND----EDIETLISD 210 +F+I D S K+I E T E + KA ++I ND ED+ S+ Sbjct: 104 KNFSILDSTDSAKIIGELLGGT-------GKEAVFKAQHQISLWKNDLKTPEDVLQTASN 156 Query: 211 IISNRTA 217 I +TA Sbjct: 157 IWEQQTA 163 >gi|258545690|ref|ZP_05705924.1| ATP-dependent helicase PcrA [Cardiobacterium hominis ATCC 15826] gi|258519060|gb|EEV87919.1| ATP-dependent helicase PcrA [Cardiobacterium hominis ATCC 15826] Length = 666 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ A +P+ + LT T AA EM RV ++ Sbjct: 25 VVAGAGSGKTGVITQKIAWLVRAAGYPANGIFALTFTNKAAREMGERVRALL-------- 76 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 GK +AR GL + T H I+Q+ L A + Sbjct: 77 -----------GK--------EAR-----------GLHISTFHRLGLDILQKEHLAAGLR 106 Query: 155 SHFAIADEEQSKKLIEEAKK 174 +F + D L++E K Sbjct: 107 RNFTVFDARDGATLVKELSK 126 >gi|157827215|ref|YP_001496279.1| DNA helicase II [Rickettsia bellii OSU 85-389] gi|157802519|gb|ABV79242.1| DNA helicase II [Rickettsia bellii OSU 85-389] Length = 653 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A AG+GKT +L R+ ++ N A P +L +T T AA EM RV +++++ Sbjct: 29 AGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEMQERVHNLVSSYG 82 >gi|30261334|ref|NP_843711.1| ATP-dependent DNA helicase UvrD [Bacillus anthracis str. Ames] gi|47777916|ref|YP_017853.2| ATP-dependent DNA helicase UvrD [Bacillus anthracis str. 'Ames Ancestor'] gi|30255188|gb|AAP25197.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis str. Ames] gi|47551621|gb|AAT30328.2| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis str. 'Ames Ancestor'] Length = 657 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 39 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 84 >gi|15839269|ref|NP_299957.1| ATP-dependent DNA helicase [Xylella fastidiosa 9a5c] gi|9107919|gb|AAF85477.1|AE004074_1 ATP-dependent DNA helicase [Xylella fastidiosa 9a5c] Length = 680 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 8/91 (8%) Query: 1 MIYHNSFQEHSETIDLISQTKSEQ----LLASDPTRSAWVSANAGSGKTHILVQRVLRLL 56 + Y + + + E + L+ S Q L P V A AGSGKTH++V+++ L+ Sbjct: 7 LPYTDRYNTYPENVSLMHGLNSPQRAAVLYREGPL---LVLAGAGSGKTHVIVEKIAYLI 63 Query: 57 LANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86 ++ +P+ + +T T +A EM RV + I Sbjct: 64 TSDCYPAKRIAAITFTNKSAKEMRERVAKQI 94 >gi|328946442|gb|EGG40582.1| exonuclease RexA [Streptococcus sanguinis SK1087] Length = 1224 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 29/47 (61%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 VSA+AGSGKT ++VQR++ +L S L T T AA E+ R+ Sbjct: 45 VSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELKERL 91 >gi|312135101|ref|YP_004002439.1| uvrd/rep helicase [Caldicellulosiruptor owensensis OL] gi|311775152|gb|ADQ04639.1| UvrD/REP helicase [Caldicellulosiruptor owensensis OL] Length = 714 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 V A AGSGKT ++ R+ +L + A P +L +T T AA EM R+ ++++ S Sbjct: 24 VLAGAGSGKTRVITYRIAYILSMGLADPDNILAITFTNKAADEMKERIKKLVSTKS 79 >gi|219852269|ref|YP_002466701.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c] gi|219546528|gb|ACL16978.1| UvrD/REP helicase [Methanosphaerula palustris E1-9c] Length = 921 Score = 42.7 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 32/111 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT + +R+ L+ P +++ T T AAAEM+ R+ Sbjct: 19 VIACAGSGKTETITRRIAGLVAGGVDPRSIVAFTFTDRAAAEMADRLR------------ 66 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 +Q P + D++ GL V TIHA+C+ +++ Sbjct: 67 ------LHLQTLVPGEPDLA--------------GLSVGTIHAYCDQRLKE 97 >gi|261404451|ref|YP_003240692.1| UvrD/REP helicase [Paenibacillus sp. Y412MC10] gi|261280914|gb|ACX62885.1| UvrD/REP helicase [Paenibacillus sp. Y412MC10] Length = 822 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI 85 A AGSGKT +LV R L+ A + PS++L +T + AAAEM R++ + Sbjct: 72 AGAGSGKTSVLVSRTGYLIAAKSVEPSSILLVTFSSKAAAEMKERIMAL 120 >gi|168483212|ref|ZP_02708164.1| recombination helicase AddA [Streptococcus pneumoniae CDC1873-00] gi|168493077|ref|ZP_02717220.1| recombination helicase AddA [Streptococcus pneumoniae CDC3059-06] gi|172043538|gb|EDT51584.1| recombination helicase AddA [Streptococcus pneumoniae CDC1873-00] gi|183576624|gb|EDT97152.1| recombination helicase AddA [Streptococcus pneumoniae CDC3059-06] Length = 1216 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 19/135 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L L S L T T AA E+ R+ + I+ Sbjct: 45 VSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELKERLEKKIS-------- 96 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 KIQ D+ +HL + + P + T+ +F + + + +I Sbjct: 97 ------KKIQ----ETDDVDLKQHLGCQLADLPNA-AIGTMDSFTQKFLGKHGYLLDIAP 145 Query: 156 HFAIADEEQSKKLIE 170 +F I + + L+E Sbjct: 146 NFRILQNQSEQLLLE 160 >gi|108801294|ref|YP_641491.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. MCS] gi|119870445|ref|YP_940397.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. KMS] gi|108771713|gb|ABG10435.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. MCS] gi|119696534|gb|ABL93607.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. KMS] Length = 785 Score = 42.7 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 40/136 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ LL A + +L +T T AAAEM RV+ ++ Sbjct: 40 IVAGAGSGKTAVLTRRIAYLLAARDVGVGQVLAITFTNKAAAEMRERVVHLVG------- 92 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 +AR + V T H+ C I++ Q L + Sbjct: 93 --------------------PRARSMW-----------VATFHSTCVRILRNQASLLPGL 121 Query: 154 TSHFAIADEEQSKKLI 169 S+F+I D + S++L+ Sbjct: 122 NSNFSIYDADDSRRLL 137 >gi|298507445|gb|ADI86168.1| ATP-dependent DNA helicase UvrD/REP [Geobacter sulfurreducens KN400] Length = 739 Score = 42.7 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 45/149 (30%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++V R+ L+ P+ +L +T T AA EM RV +++ Sbjct: 24 VLAGAGSGKTRVIVHRIAHLIRERGVPARQILAVTFTNKAAGEMRERVEKLVGG------ 77 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E P + T H+ C I+++ Sbjct: 78 -------------------------------EVP---LIATFHSTCARILRREIHHLGYD 103 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLD 183 S FAI D++ S KL++E +A + LD Sbjct: 104 SSFAIYDDKDSGKLLKE----VMAGLGLD 128 >gi|291454013|ref|ZP_06593403.1| ATP-dependent DNA helicase [Streptomyces albus J1074] gi|291356962|gb|EFE83864.1| ATP-dependent DNA helicase [Streptomyces albus J1074] Length = 1201 Score = 42.7 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 28/167 (16%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T AA Sbjct: 27 IPFTPEQMACVTAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 86 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E++ RV + +T E L+ G P TPG + T Sbjct: 87 GELAERVRKALTEAGVTEPEPLAPP-----GAGPQDE-------------HTPGEPVIST 128 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 HAF ++ L + E S +L+ +A + LA+ +L Sbjct: 129 YHAFAGRLLTDHGLRLGL---------EPSTRLLADATRFQLAARVL 166 >gi|39998500|ref|NP_954451.1| ATP-dependent DNA helicase PcrA [Geobacter sulfurreducens PCA] gi|39985447|gb|AAR36801.1| ATP-dependent DNA helicase PcrA, putative [Geobacter sulfurreducens PCA] Length = 739 Score = 42.7 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 45/149 (30%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++V R+ L+ P+ +L +T T AA EM RV +++ Sbjct: 24 VLAGAGSGKTRVIVHRIAHLIRERGVPARQILAVTFTNKAAGEMRERVEKLVGG------ 77 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E P + T H+ C I+++ Sbjct: 78 -------------------------------EVP---LIATFHSTCARILRREIHHLGYD 103 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLD 183 S FAI D++ S KL++E +A + LD Sbjct: 104 SSFAIYDDKDSGKLLKE----VMAGLGLD 128 >gi|311064185|ref|YP_003970910.1| ATP-dependent DNA helicase PcrA [Bifidobacterium bifidum PRL2010] gi|310866504|gb|ADP35873.1| PcrA ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010] Length = 885 Score = 42.7 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 10/82 (12%) Query: 15 DLISQTKSEQLLASDPTRSAWVS---------ANAGSGKTHILVQRVLRLLLA-NAHPST 64 DLI+++ E + +P ++ V A AGSGKT +L +R+ +L A PS Sbjct: 6 DLIARSAEELVGDLNPQQAEAVQYRGPALLIGAGAGSGKTRVLTRRIAWILTQFGAWPSQ 65 Query: 65 LLCLTHTKAAAAEMSHRVLEII 86 +L +T T AAAEM R+ +I Sbjct: 66 ILAITFTNKAAAEMRERLEGLI 87 >gi|310287344|ref|YP_003938602.1| ATP-dependent DNA helicase pcrA [Bifidobacterium bifidum S17] gi|309251280|gb|ADO53028.1| ATP-dependent DNA helicase pcrA [Bifidobacterium bifidum S17] Length = 885 Score = 42.7 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 10/82 (12%) Query: 15 DLISQTKSEQLLASDPTRSAWVS---------ANAGSGKTHILVQRVLRLLLA-NAHPST 64 DLI+++ E + +P ++ V A AGSGKT +L +R+ +L A PS Sbjct: 6 DLIARSAEELVGDLNPQQAEAVQYRGPALLIGAGAGSGKTRVLTRRIAWILTQFGAWPSQ 65 Query: 65 LLCLTHTKAAAAEMSHRVLEII 86 +L +T T AAAEM R+ +I Sbjct: 66 ILAITFTNKAAAEMRERLEGLI 87 >gi|229028999|ref|ZP_04185098.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1271] gi|228732279|gb|EEL83162.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1271] Length = 688 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|229160287|ref|ZP_04288286.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus R309803] gi|228623248|gb|EEK80075.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus R309803] Length = 688 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|167957596|ref|ZP_02544670.1| ATP-dependent DNA helicase PcrA [candidate division TM7 single-cell isolate TM7c] Length = 702 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 35/139 (25%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT L R+ ++ A PS +L +T T AA EM R+ + Sbjct: 24 AGAGSGKTKTLTHRIAYIISRGLAWPSQILAVTFTNKAAREMRERL-----------GSM 72 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 L+ + T+ R+ + + T H C I++ NI S+ Sbjct: 73 LNQDYTQ--------------RNFMPWM---------GTFHGICVKILRIEGGIINIPSN 109 Query: 157 FAIADEEQSKKLIEEAKKS 175 F I DE K ++++A KS Sbjct: 110 FVIYDESDKKGVVKQAMKS 128 >gi|145219721|ref|YP_001130430.1| exodeoxyribonuclease V, beta subunit [Prosthecochloris vibrioformis DSM 265] gi|145205885|gb|ABP36928.1| exodeoxyribonuclease V, beta subunit [Chlorobium phaeovibrioides DSM 265] Length = 1167 Score = 42.7 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 2/131 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLE-IITAWSHLS 93 V A+AG+GKT+ L + LRL++ P ++L +T+T+AA E+ ++ E I + L+ Sbjct: 17 VEASAGTGKTYALTELYLRLIIEKELLPESILVVTYTEAATKELRQKIRERIRDTTAMLA 76 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + + G + + LL L V TIH FC +Q E+ Sbjct: 77 SPLECTKRLASLGSLAMEKGAGEVSSLLENALYLLDTASVFTIHGFCLRALQDNAFESGS 136 Query: 154 TSHFAIADEEQ 164 IA +E+ Sbjct: 137 LYDTEIAADER 147 >gi|308069947|ref|YP_003871552.1| ATP-dependent nuclease subunit A [Paenibacillus polymyxa E681] gi|305859226|gb|ADM71014.1| ATP-dependent nuclease subunit A [Paenibacillus polymyxa E681] Length = 1339 Score = 42.7 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 25/138 (18%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 S+ + V+A AGSGKT +LV+R++R ++ LL T TKAAAAEM R+ E Sbjct: 27 SESGNNMLVAAAAGSGKTAVLVERIIRKIVDPQLGFSVDRLLVATFTKAAAAEMRQRIRE 86 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + ++ ++P + + LL + T+H+FC ++ Sbjct: 87 ---------------ALERVLEQEPESEHVRRQLSLL-------NRASITTLHSFCMEVI 124 Query: 145 QQFPLEANITSHFAIADE 162 ++ + F I +E Sbjct: 125 RRHYQAIPLDPGFRIMNE 142 >gi|298481368|ref|ZP_06999561.1| UvrD/REP helicase domain-containing protein [Bacteroides sp. D22] gi|298272572|gb|EFI14140.1| UvrD/REP helicase domain-containing protein [Bacteroides sp. D22] Length = 1056 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 8/127 (6%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + D+ Sbjct: 9 ASAGSGKTFTLAVEYIKLLIFNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDKD 67 Query: 97 LSAEITKIQ---GKKPNKSDMSKARHLLIT-ILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 A + +I+ GK + ++ +A + ++ +L +V+TI +F +++M+ E Sbjct: 68 SEAYLNRIKEETGK--TEQEIREAAGIALSYMLHDYSRFRVETIDSFFQSVMRNLARELE 125 Query: 153 ITSHFAI 159 ++ + I Sbjct: 126 LSPNLNI 132 >gi|270700810|ref|ZP_06223053.1| DNA helicase II [Haemophilus influenzae HK1212] gi|270315854|gb|EFA27952.1| DNA helicase II [Haemophilus influenzae HK1212] Length = 84 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ +T Sbjct: 4 SELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMAVT 61 Query: 70 HTKAAAAEMSHRV 82 T AAAEM HR+ Sbjct: 62 FTNKAAAEMRHRI 74 >gi|114326871|ref|YP_744028.1| DNA helicase II [Granulibacter bethesdensis CGDNIH1] gi|114315045|gb|ABI61105.1| DNA helicase II [Granulibacter bethesdensis CGDNIH1] Length = 759 Score = 42.7 bits (99), Expect = 0.041, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 39/141 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AG+GKT +L R +L + A P+ +L +T T AA EM RV I+ Sbjct: 45 VLAGAGTGKTRVLTTRFAHILKSGRAFPNQVLAVTFTNKAAREMRERVGAILG------- 97 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E GL + T HA C ++++ ++ Sbjct: 98 -------------------------------EKVEGLWLGTFHALCARMLRRHAEYVGLS 126 Query: 155 SHFAIADEEQSKKLIEEAKKS 175 S+F+I D + +L+++ ++ Sbjct: 127 SNFSILDSDDQMRLLKQVAET 147 >gi|320095653|ref|ZP_08027311.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 178 str. F0338] gi|319977414|gb|EFW09099.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 178 str. F0338] Length = 525 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL A +L +T T AAAEM R+ ++ D Sbjct: 49 IMAGAGSGKTRVLTHRIAYLLATGQARAGQILAITFTNKAAAEMRERIAALV------GD 102 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E G + V T H+ C I++ A ++ Sbjct: 103 EA--------------------------------GRMWVSTFHSACVRILRYEHEAAGLS 130 Query: 155 SHFAIADEEQSKKLIE 170 F I D + S++L++ Sbjct: 131 GSFTIYDAQDSQRLMQ 146 >gi|309379709|emb|CBX21698.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 670 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 74/187 (39%), Gaps = 49/187 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 20 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKMLP------- 72 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 KP GL + T HA I+++ Sbjct: 73 -------------KPQTR-----------------GLTICTFHALGMKILREEANHIGYK 102 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND----EDIETLISD 210 +F+I D S K+I E T E + KA ++I ND ED+ S+ Sbjct: 103 KNFSILDSTDSAKIIGELLGGT-------GKEAVFKAQHQISLWKNDLKTPEDVLQTASN 155 Query: 211 IISNRTA 217 I +TA Sbjct: 156 IWEQQTA 162 >gi|226938999|ref|YP_002794070.1| UvrD [Laribacter hongkongensis HLHK9] gi|226713923|gb|ACO73061.1| UvrD [Laribacter hongkongensis HLHK9] Length = 710 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 D ++ QL A A V A AGSGKT +L R+ LL A P+++L +T T Sbjct: 4 DFLAGLNPAQLAAVTTRSHALVLAGAGSGKTRVLTSRIAWLLREGLASPASVLAVTFTNK 63 Query: 74 AAAEMSHRV 82 AA EM RV Sbjct: 64 AAREMQTRV 72 >gi|118476800|ref|YP_893951.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis str. Al Hakam] gi|118416025|gb|ABK84444.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis str. Al Hakam] Length = 688 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|91791848|ref|YP_561499.1| DNA-dependent helicase II [Shewanella denitrificans OS217] gi|91713850|gb|ABE53776.1| ATP-dependent DNA helicase UvrD [Shewanella denitrificans OS217] Length = 722 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +L R+ L+ + P ++L +T Sbjct: 4 SRLLDGLNDEQREAVGA--PLSNMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVT 61 Query: 70 HTKAAAAEMSHRVLEI 85 T AAAEM RV ++ Sbjct: 62 FTNKAAAEMRERVEKV 77 >gi|49477145|ref|YP_035463.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328701|gb|AAT59347.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 688 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|229120851|ref|ZP_04250093.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 95/8201] gi|228662511|gb|EEL18109.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 95/8201] Length = 688 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|196035398|ref|ZP_03102803.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus W] gi|195992075|gb|EDX56038.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus W] Length = 688 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|83644830|ref|YP_433265.1| UvrD/REP helicase family protein [Hahella chejuensis KCTC 2396] gi|83632873|gb|ABC28840.1| UvrD/REP helicase family protein [Hahella chejuensis KCTC 2396] Length = 631 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 D++S EQ A + T A V A AGSGKT ++ + L+L A P +++ +T T Sbjct: 3 DILSYLNEEQFKAVNATTGATLVLAGAGSGKTRVVTYKAAHLILNEKALPKSIILVTFTN 62 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ E+I Sbjct: 63 KAANEMRSRLGELI 76 >gi|47569157|ref|ZP_00239844.1| ATP-dependent DNA helicase [Bacillus cereus G9241] gi|47554129|gb|EAL12493.1| ATP-dependent DNA helicase [Bacillus cereus G9241] gi|324325344|gb|ADY20604.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 688 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|229195526|ref|ZP_04322294.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus m1293] gi|228588066|gb|EEK46116.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus m1293] Length = 688 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|225375304|ref|ZP_03752525.1| hypothetical protein ROSEINA2194_00929 [Roseburia inulinivorans DSM 16841] gi|225212793|gb|EEG95147.1| hypothetical protein ROSEINA2194_00929 [Roseburia inulinivorans DSM 16841] Length = 611 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 A GSGKT ++ +R L+ + +PS +L +T TKAAA EM R L ++ S+ Sbjct: 24 AGPGSGKTAVITERTKNLITKYHVNPSNILVITFTKAAALEMKTRFLSLMGNGSY 78 >gi|192360051|ref|YP_001984019.1| DNA-dependent helicase II [Cellvibrio japonicus Ueda107] gi|190686216|gb|ACE83894.1| DNA helicase II [Cellvibrio japonicus Ueda107] Length = 769 Score = 42.7 bits (99), Expect = 0.042, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 31/166 (18%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 +F + S +D ++ + E + S P + + A AGSGKT +LV R+ L+ + P + Sbjct: 27 AFMDVSHLLDNLNDAQREAV--SAPAGNQLILAGAGSGKTRVLVHRIAWLIQVEQVSPYS 84 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 ++ +T T AA EM R+ DE+ +T S ++H+ Sbjct: 85 IMAVTFTNKAAREMRARL-----------DELFGQSLTD-----------SGSQHI---- 118 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 + V T H +++ +A + +F I D + ++I+ Sbjct: 119 --NSRAMWVGTFHGLAHRLLKAHWQDAGLPQNFQILDSDDQLRMIK 162 >gi|254682228|ref|ZP_05146090.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus anthracis str. CNEVA-9066] Length = 631 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 13 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 58 >gi|239982165|ref|ZP_04704689.1| ATP-dependent DNA helicase [Streptomyces albus J1074] Length = 1191 Score = 42.7 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 28/167 (16%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T AA Sbjct: 17 IPFTPEQMACVTAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 76 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E++ RV + +T E L+ G P TPG + T Sbjct: 77 GELAERVRKALTEAGVTEPEPLAPP-----GAGPQDE-------------HTPGEPVIST 118 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 HAF ++ L + E S +L+ +A + LA+ +L Sbjct: 119 YHAFAGRLLTDHGLRLGL---------EPSTRLLADATRFQLAARVL 156 >gi|229154895|ref|ZP_04283009.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus ATCC 4342] gi|228628453|gb|EEK85166.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus ATCC 4342] Length = 688 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|228476304|ref|ZP_04061005.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis SK119] gi|228269587|gb|EEK11093.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis SK119] Length = 730 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+S EQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LVSNMNKEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63 Query: 74 AAAEMSHRV 82 AA EM RV Sbjct: 64 AAKEMKERV 72 >gi|145222451|ref|YP_001133129.1| ATP-dependent DNA helicase PcrA [Mycobacterium gilvum PYR-GCK] gi|315442898|ref|YP_004075777.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. Spyr1] gi|145214937|gb|ABP44341.1| ATP-dependent DNA helicase PcrA [Mycobacterium gilvum PYR-GCK] gi|315261201|gb|ADT97942.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. Spyr1] Length = 780 Score = 42.7 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 40/136 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ LL A + +L +T T AAAEM RV+ ++ Sbjct: 39 IVAGAGSGKTAVLTRRIAYLLAARDVGVGQVLAITFTNKAAAEMRERVVGLVG------- 91 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 +AR++ ++ T H+ C I++ Q L + Sbjct: 92 --------------------PRARNMWVS-----------TFHSTCVRILRNQASLLPGL 120 Query: 154 TSHFAIADEEQSKKLI 169 S+F+I D + S++L+ Sbjct: 121 NSNFSIYDADDSRRLL 136 >gi|87302917|ref|ZP_01085721.1| putative ATP-dependent DNA helicase (PcrA) [Synechococcus sp. WH 5701] gi|87282413|gb|EAQ74372.1| putative ATP-dependent DNA helicase (PcrA) [Synechococcus sp. WH 5701] Length = 641 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AG+GKT +V R+ LL P +L +T T+ AAAE+ R+ Sbjct: 25 VVAGAGTGKTKTMVARICHLLENGTPPERILAITFTRKAAAELVSRI 71 >gi|314934070|ref|ZP_07841433.1| ATP-dependent DNA helicase PcrA [Staphylococcus caprae C87] gi|313653181|gb|EFS16940.1| ATP-dependent DNA helicase PcrA [Staphylococcus caprae C87] Length = 731 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ +EQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LVKNMNTEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63 Query: 74 AAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 64 AAKEMKERVEQLV 76 >gi|302383276|ref|YP_003819099.1| UvrD/REP helicase [Brevundimonas subvibrioides ATCC 15264] gi|302193904|gb|ADL01476.1| UvrD/REP helicase [Brevundimonas subvibrioides ATCC 15264] Length = 799 Score = 42.7 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 65/163 (39%), Gaps = 41/163 (25%) Query: 12 ETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 ET D + EQ A + T V A AG+GKT +L R+ +L A P LL +T Sbjct: 44 ETPDYLGGLNPEQREAVEATEGPVLVLAGAGTGKTRVLTTRLAHILATGRARPWELLVVT 103 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ +I SAE Sbjct: 104 FTNKAAREMRERITHLIGP---------SAE----------------------------- 125 Query: 130 GLK-VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 GL+ + T H+ I+++ P + S F I D + ++L+++ Sbjct: 126 GLRWLGTFHSVAAQILRRHPELVGLKSSFTILDTDDQERLLKQ 168 >gi|261886355|ref|ZP_06010394.1| ATP-dependent DNA helicase PcrA [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 685 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 67/167 (40%), Gaps = 38/167 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L S KS++ AS + + A AGSGKT + R+ L+ + P L LT T A Sbjct: 5 LDSLNKSQKEAASHIDGAMLILAGAGSGKTKTITTRLAYLISVVGIDPLNTLTLTFTNKA 64 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+ M HR A S L+ I S+ + + Sbjct: 65 ASTMKHR------ALSMLNSNISSSPL-------------------------------LC 87 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 T H F ++ + E + F I D + KK+I+E + S AS++ Sbjct: 88 TFHKFGLLFLKFYINELGRKNSFVIIDTDDKKKIIKEFESSVAASVI 134 >gi|289577825|ref|YP_003476452.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter italicus Ab9] gi|289527538|gb|ADD01890.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter italicus Ab9] Length = 711 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 9/76 (11%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL---- 92 A AGSGKT +L R+ L+ PS +L +T T AA EM RV E++ L Sbjct: 27 AGAGSGKTRVLTHRIAYLIKEKKISPSNILAITFTNKAAEEMKTRVEELLGYIGDLWVST 86 Query: 93 ----SDEILSAEITKI 104 S IL +I KI Sbjct: 87 FHSASVRILRRDIDKI 102 >gi|225863179|ref|YP_002748557.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus 03BB102] gi|225786754|gb|ACO26971.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus 03BB102] Length = 688 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|170079561|ref|YP_001736194.1| ATP-dependent nuclease subunit A [Synechococcus sp. PCC 7002] gi|169887230|gb|ACB00939.1| ATP-dependent nuclease subunit A [Synechococcus sp. PCC 7002] Length = 1075 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 36/185 (19%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 ++A AG+GKTH+L R L L + P ++ +T T+ AA E+ R+ ++I A H Sbjct: 19 ITAGAGTGKTHMLAARYLHHLENDGLSPLQVVAMTFTEKAATELRARIRQVI-AQEH--- 74 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P+K D L ++ T HA I Q+ P A + Sbjct: 75 --------------PDKFDW----------LAEVEAAQISTFHAVAMRICQEHPEAAGVP 110 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN 214 ++F DE + E LA + + E+ Y L+ + I L+ D +S Sbjct: 111 ANFQPLDEWEGSIWQAEQLNVALAEMPPELYGEIP---YSTLKTA----IAALLGDPLSA 163 Query: 215 RTALK 219 R AL+ Sbjct: 164 REALE 168 >gi|126661311|ref|ZP_01732380.1| DNA helicase II [Cyanothece sp. CCY0110] gi|126617407|gb|EAZ88207.1| DNA helicase II [Cyanothece sp. CCY0110] Length = 772 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 24/182 (13%) Query: 13 TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70 +++ +SQ Q LA + V A AGSGKT L R+ L+ P ++L +T Sbjct: 4 SVNFLSQLNPSQRLAVEHFCGPLLVVAGAGSGKTRALTYRIAHLITHYQVDPESILAVTF 63 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP--NKSDMSKARHLLITILETP 128 T AA EM R+ + + + E+ Q +P + S+ + R L +T Sbjct: 64 TNKAAREMKDRL-----------ERLFAQEMALKQHSQPFNSLSEYEQKRLLSQVYKKTT 112 Query: 129 GGLKVQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAKKSTLASIML 182 L + T H+ C I++ ++ E T +F+I DE + L+ K L L Sbjct: 113 KKLWIGTFHSLCARILRYDINKYQDERKRTWERNFSIFDESDVQSLV---KNIVLKQFNL 169 Query: 183 DN 184 D+ Sbjct: 170 DD 171 >gi|311748551|ref|ZP_07722336.1| ATP-dependent DNA helicase PcrA [Algoriphagus sp. PR1] gi|126577070|gb|EAZ81318.1| ATP-dependent DNA helicase PcrA [Algoriphagus sp. PR1] Length = 752 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 6/58 (10%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV-----LEIITAW 89 A AGSGKT +L R+ L+ A + +L LT T AA+EM HR+ LE W Sbjct: 26 AGAGSGKTRVLTYRIAHLIYAKGVDAFNILSLTFTNKAASEMKHRIESLAGLEARNTW 83 >gi|22300001|ref|NP_683248.1| ATP-dependent helicase [Thermosynechococcus elongatus BP-1] gi|22296186|dbj|BAC10010.1| ATP-dependent helicase [Thermosynechococcus elongatus BP-1] Length = 773 Score = 42.7 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 16/143 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+ + P +L +T T AA EM R+ + + ++ Sbjct: 26 VVAGAGSGKTRTLTYRIAHLIRHHQVAPEHILAVTFTNKAAREMKERIETLFS--QEMAQ 83 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ------QFP 148 ++ + + + ++ + R + P L + T H+ C +++ Q P Sbjct: 84 QLYGRDWLDL-----SPAEQRRVRSRVYHTYTQP--LWIGTFHSLCARLLRLEIEAYQHP 136 Query: 149 LEANITSHFAIADEEQSKKLIEE 171 T HF I DE + LI++ Sbjct: 137 QGYRWTRHFTIFDESDVQSLIKQ 159 >gi|312279028|gb|ADQ63685.1| ATP-dependent helicase/nuclease subunit A [Streptococcus thermophilus ND03] Length = 1217 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 19/124 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L ++ L T T AA E+ R Sbjct: 45 VSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELKER-------------- 90 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 L +TK G+ K+D +A L + G + T+ AF + ++ Q+ ++ Sbjct: 91 -LEKRLTKHLGQA--KTDEERA--FLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSP 145 Query: 156 HFAI 159 F I Sbjct: 146 TFRI 149 >gi|297544110|ref|YP_003676412.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841885|gb|ADH60401.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 711 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 9/76 (11%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL---- 92 A AGSGKT +L R+ L+ PS +L +T T AA EM RV E++ L Sbjct: 27 AGAGSGKTRVLTHRIAYLIKEKKISPSNILAITFTNKAAEEMKTRVEELLGYIGDLWVST 86 Query: 93 ----SDEILSAEITKI 104 S IL +I KI Sbjct: 87 FHSASVRILRRDIDKI 102 >gi|212716229|ref|ZP_03324357.1| hypothetical protein BIFCAT_01145 [Bifidobacterium catenulatum DSM 16992] gi|212660741|gb|EEB21316.1| hypothetical protein BIFCAT_01145 [Bifidobacterium catenulatum DSM 16992] Length = 1398 Score = 42.7 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 26/146 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT+ + +R++ L+ P +L LT T+ AA+E+ RV Sbjct: 27 VVAGAGSGKTYTMTRRIITLIEQGVSPEKILGLTFTRKAASELLSRV------------- 73 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 SA +++ Q ++ KS +T L+ +V T AF ++I++Q+ L Sbjct: 74 --SAAVSRNQRERGLKSAN-------MTFLKP----EVSTYDAFFQSIVRQYGLLVGFDQ 120 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIM 181 + E + +LI + +M Sbjct: 121 NTQPLSEAGAMQLIHTVLDKHMVDLM 146 >gi|206977850|ref|ZP_03238739.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus H3081.97] gi|217958806|ref|YP_002337354.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus AH187] gi|222094953|ref|YP_002529013.1| ATP-dependent DNA helicase [Bacillus cereus Q1] gi|229138019|ref|ZP_04266617.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST26] gi|206743947|gb|EDZ55365.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus H3081.97] gi|217067646|gb|ACJ81896.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus AH187] gi|221239011|gb|ACM11721.1| ATP-dependent DNA helicase [Bacillus cereus Q1] gi|228645364|gb|EEL01598.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST26] Length = 688 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|50954629|ref|YP_061917.1| ATP-dependent DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951111|gb|AAT88812.1| ATP-dependent DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 1125 Score = 42.7 bits (99), Expect = 0.043, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LL 66 E ++ + L T +Q + P A V A AGSGKT + RV+ LLAN +L Sbjct: 38 EIADALGLPRPTGQQQAVVEAPLSPAIVVAGAGSGKTETMANRVV-WLLANGEVRVPEVL 96 Query: 67 CLTHTKAAAAEMSHRV 82 LT T+ AA E++ RV Sbjct: 97 GLTFTRKAAGELAERV 112 >gi|52144107|ref|YP_082721.1| ATP-dependent DNA helicase [Bacillus cereus E33L] gi|51977576|gb|AAU19126.1| ATP-dependent DNA helicase [Bacillus cereus E33L] Length = 688 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|42780420|ref|NP_977667.1| ATP-dependent DNA helicase UvrD [Bacillus cereus ATCC 10987] gi|42736339|gb|AAS40275.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus ATCC 10987] Length = 688 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|117920689|ref|YP_869881.1| exodeoxyribonuclease V subunit beta [Shewanella sp. ANA-3] gi|117613021|gb|ABK48475.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. ANA-3] Length = 1263 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 10/140 (7%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87 S + A+AG+GKT+ + LRLLL + L C +T T AA E+ R+ I Sbjct: 20 SRLIEASAGTGKTYTISGLYLRLLLGDGLSEPLNCEQILVVTFTNAATEELRDRIRRRIQ 79 Query: 88 AW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 L EI + + K P R + L++ + TIH FC+ I+ Sbjct: 80 VAFKCFLGLEINDPFVQALYDKTPEAERAIALRRFDLA-LKSLDEAAIFTIHGFCQRILA 138 Query: 146 QFPLEANI--TSHFAIADEE 163 E+++ S F + D E Sbjct: 139 DLAFESSLLFESDFTLDDSE 158 >gi|49184166|ref|YP_027418.1| ATP-dependent DNA helicase UvrD [Bacillus anthracis str. Sterne] gi|65318602|ref|ZP_00391561.1| COG0210: Superfamily I DNA and RNA helicases [Bacillus anthracis str. A2012] gi|165872859|ref|ZP_02217485.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis str. A0488] gi|167636108|ref|ZP_02394413.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis str. A0442] gi|167641230|ref|ZP_02399484.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis str. A0193] gi|170686685|ref|ZP_02877905.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis str. A0465] gi|170708869|ref|ZP_02899303.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis str. A0389] gi|177654409|ref|ZP_02936306.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis str. A0174] gi|190568743|ref|ZP_03021647.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis Tsiankovskii-I] gi|227815925|ref|YP_002815934.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis str. CDC 684] gi|229183529|ref|ZP_04310753.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BGSC 6E1] gi|229601581|ref|YP_002865755.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis str. A0248] gi|254734022|ref|ZP_05191736.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus anthracis str. Western North America USA6153] gi|254740289|ref|ZP_05197980.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus anthracis str. Kruger B] gi|254753675|ref|ZP_05205710.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus anthracis str. Vollum] gi|254758771|ref|ZP_05210798.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus anthracis str. Australia 94] gi|49178093|gb|AAT53469.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis str. Sterne] gi|164711436|gb|EDR16987.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis str. A0488] gi|167510871|gb|EDR86263.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis str. A0193] gi|167528462|gb|EDR91227.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis str. A0442] gi|170126185|gb|EDS95078.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis str. A0389] gi|170669208|gb|EDT19951.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis str. A0465] gi|172080693|gb|EDT65775.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis str. A0174] gi|190560159|gb|EDV14140.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis Tsiankovskii-I] gi|227004776|gb|ACP14519.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis str. CDC 684] gi|228599939|gb|EEK57535.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BGSC 6E1] gi|229265989|gb|ACQ47626.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus anthracis str. A0248] Length = 688 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|300900636|ref|ZP_07118795.1| DNA helicase II [Escherichia coli MS 198-1] gi|300355867|gb|EFJ71737.1| DNA helicase II [Escherichia coli MS 198-1] Length = 695 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 39/128 (30%) Query: 44 KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102 KT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 10 KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 55 Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162 + GG+ V T H +++ ++AN+ F I D Sbjct: 56 ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 91 Query: 163 EQSKKLIE 170 E +L++ Sbjct: 92 EDQLRLLK 99 >gi|297568687|ref|YP_003690031.1| exodeoxyribonuclease V, beta subunit [Desulfurivibrio alkaliphilus AHT2] gi|296924602|gb|ADH85412.1| exodeoxyribonuclease V, beta subunit [Desulfurivibrio alkaliphilus AHT2] Length = 1303 Score = 42.7 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 1/119 (0%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT+ + LR +L P +L L+ T+AA AE+ R+ + A + Sbjct: 20 IEASAGTGKTYSITSLYLRFILEQELPVEKILVLSFTEAATAELHGRLRARLQAAATAFQ 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + +Q N + LL + V TIH+FC ++QQ E+ + Sbjct: 80 QGGGTNDPFLQELVRNSRRPERDLRLLQRAVSDIDQAAVTTIHSFCHRVLQQGAFESGM 138 >gi|330723317|gb|AEC45687.1| ATP-dependent helicase PcrA [Mycoplasma hyorhinis MCLD] Length = 751 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 84/204 (41%), Gaps = 54/204 (26%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AG+GKT +L +++ L+ A +L LT T AA EM RV +I A ++ Sbjct: 36 AGAGTGKTSVLTKKIAYLIAAKITTAKKILALTFTNKAANEMKERVKNVIGADAN----- 90 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM----QQFP---- 148 ET K+ T H+ C I+ QQF Sbjct: 91 -----------------------------ET----KIFTFHSLCNLILKIESQQFKKIKE 117 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL---KKAFYEILEISNDEDIE 205 E N+ +F I DE KK++++ + S+ +NEE+ +KA I + N E Sbjct: 118 FE-NLDKNFNIIDERDQKKILKDVYEKLQFSL---SNEEIPNFRKAIDFISYVKNKELTF 173 Query: 206 TLISDIISNRTALKLIFFFFSYLW 229 I N T KL+ + +Y++ Sbjct: 174 EQIQANAQNSTEKKLVKIYKNYVY 197 >gi|324007528|gb|EGB76747.1| DNA helicase II [Escherichia coli MS 57-2] Length = 696 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 39/128 (30%) Query: 44 KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102 KT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 11 KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 56 Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162 + GG+ V T H +++ ++AN+ F I D Sbjct: 57 ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 92 Query: 163 EQSKKLIE 170 E +L++ Sbjct: 93 EDQLRLLK 100 >gi|314936042|ref|ZP_07843391.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis subsp. hominis C80] gi|313655859|gb|EFS19602.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis subsp. hominis C80] Length = 730 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+S EQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LVSNMNKEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63 Query: 74 AAAEMSHRV 82 AA EM RV Sbjct: 64 AAKEMKERV 72 >gi|50292981|ref|XP_448923.1| hypothetical protein [Candida glabrata CBS 138] gi|49528236|emb|CAG61893.1| unnamed protein product [Candida glabrata] Length = 1088 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 DPT++ V A G+GKT +L RV L+L P ++ T T AA EM R+ ++ Sbjct: 32 DPTKALQVIAGPGTGKTKVLTSRVAYLILHYRIDPRDIIVTTFTNKAAKEMKDRLAVLLE 91 Query: 88 AWSHLSDEIL 97 S +I+ Sbjct: 92 NTEFRSSDIM 101 >gi|282849748|ref|ZP_06259132.1| UvrD/REP helicase [Veillonella parvula ATCC 17745] gi|282580685|gb|EFB86084.1| UvrD/REP helicase [Veillonella parvula ATCC 17745] Length = 862 Score = 42.7 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 74/184 (40%), Gaps = 40/184 (21%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79 + +Q + + ++ + A+AG+GKT+ L RV L+ A +LC+T T AA EM Sbjct: 5 REQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGGYAKAENILCMTFTNKAANEMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ ++ + P K+ ++V T H+F Sbjct: 65 GRIQSLVGS--------------------PAKA------------------VEVSTFHSF 86 Query: 140 CEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C I+QQ + + + DEE K+L E + L + N + K + + Sbjct: 87 CFFILQQEGKRNETLYTDVTVFDEEDCKELSEPYRPGKLREMSFANVISMVKEYRSLYGF 146 Query: 199 SNDE 202 +D+ Sbjct: 147 YSDD 150 >gi|228913901|ref|ZP_04077526.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845840|gb|EEM90866.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 688 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|196042381|ref|ZP_03109647.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus NVH0597-99] gi|196026788|gb|EDX65429.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus NVH0597-99] Length = 688 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|301328420|ref|ZP_07221506.1| DNA helicase II [Escherichia coli MS 78-1] gi|300845170|gb|EFK72930.1| DNA helicase II [Escherichia coli MS 78-1] Length = 700 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 39/128 (30%) Query: 44 KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102 KT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 15 KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 60 Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162 + GG+ V T H +++ ++AN+ F I D Sbjct: 61 ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 96 Query: 163 EQSKKLIE 170 E +L++ Sbjct: 97 EDQLRLLK 104 >gi|218902425|ref|YP_002450259.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus AH820] gi|228926366|ref|ZP_04089438.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944936|ref|ZP_04107297.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|218536634|gb|ACK89032.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus AH820] gi|228814605|gb|EEM60865.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228833190|gb|EEM78755.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 688 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|254228202|ref|ZP_04921631.1| Superfamily I DNA and RNA helicases [Vibrio sp. Ex25] gi|262394061|ref|YP_003285915.1| DNA helicase [Vibrio sp. Ex25] gi|151939275|gb|EDN58104.1| Superfamily I DNA and RNA helicases [Vibrio sp. Ex25] gi|262337655|gb|ACY51450.1| DNA helicase [Vibrio sp. Ex25] Length = 634 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 33/48 (68%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 +S AGSGKT+ LV+ VL+ ++ ++ + C+T+T +A AE+ RVL Sbjct: 30 LSGGAGSGKTYSLVE-VLKAVINDSPSLNIACITYTNSAVAEIEDRVL 76 >gi|24379891|ref|NP_721846.1| putative exonuclease RexA [Streptococcus mutans UA159] gi|81588281|sp|Q8DT76|ADDA_STRMU RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|24377868|gb|AAN59152.1|AE014982_1 putative exonuclease RexA [Streptococcus mutans UA159] Length = 1212 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 29/140 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++++R++ +L L T T AA E+ R+ + IT L+++ Sbjct: 45 VSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTND 104 Query: 96 -----ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 LS ++ +Q + T+ AF + ++ Q+ Sbjct: 105 TALKQFLSEQLLGLQTA------------------------DIGTMDAFTQKLVTQYGYT 140 Query: 151 ANITSHFAIADEEQSKKLIE 170 I+ +F I ++ + L++ Sbjct: 141 LGISPNFRILQDKSEQDLLK 160 >gi|319789207|ref|YP_004150840.1| UvrD/REP helicase [Thermovibrio ammonificans HB-1] gi|317113709|gb|ADU96199.1| UvrD/REP helicase [Thermovibrio ammonificans HB-1] Length = 709 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 40/140 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ +V ++ P +L +T T AA EM RV +++ Sbjct: 25 VLAGAGSGKTRVITFKVAYMVKELRFEPERILAVTFTNKAAREMKERVEQLL-------- 76 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G+ + +L V T H+FC ++++ E ++ Sbjct: 77 -----------GRS-------------VPVL-------VSTFHSFCVRLLRRHAEEVGLS 105 Query: 155 SHFAIADEEQSKKLIEEAKK 174 F I D E K+L+ E K Sbjct: 106 REFVILDGEDRKRLLSEVVK 125 >gi|282890920|ref|ZP_06299436.1| hypothetical protein pah_c030o020 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499204|gb|EFB41507.1| hypothetical protein pah_c030o020 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 1167 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 20/136 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEII-TAWSH 91 + A+AG+GKT + ++RLLL N P T +L +T T+AA ++ R+ E I A S Sbjct: 17 LEASAGTGKTFSIENIIVRLLLENP-PVTIQEILVVTFTRAATHDLKVRIRENIEKALSF 75 Query: 92 LSDEILSAE---------ITKIQGKKPNKSDMSKAR--HLLITILETPGGLKVQTIHAFC 140 L +LS + IQG+ P + K R H L + ++ TIH+FC Sbjct: 76 LQGLLLSPHYCYQEAPDYLKAIQGRDPEEIKEIKKRLEHALFEYDQA----QIFTIHSFC 131 Query: 141 EAIMQQFPLEANITSH 156 ++ E ++ H Sbjct: 132 LRTLKTHFFEGDLALH 147 >gi|149372162|ref|ZP_01891432.1| ATP-dependent DNA helicase II [unidentified eubacterium SCB49] gi|149354929|gb|EDM43491.1| ATP-dependent DNA helicase II [unidentified eubacterium SCB49] Length = 780 Score = 42.7 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 29/53 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT +L R+ L+ P +L LT T AA EM R+ I+ A Sbjct: 33 VIAGAGSGKTRVLTFRIAYLMSQGVDPFNILALTFTNKAAREMKSRITTIVGA 85 >gi|238020268|ref|ZP_04600694.1| hypothetical protein GCWU000324_00143 [Kingella oralis ATCC 51147] gi|237868662|gb|EEP69666.1| hypothetical protein GCWU000324_00143 [Kingella oralis ATCC 51147] Length = 746 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 7 FQEHSETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 F + + L++ EQL A + P +SA V A AGSGKT +L RV LL A + Sbjct: 3 FSSENPSQSLLNNLNPEQLAAVTYPPQSALVLAGAGSGKTRVLTTRVAWLLQNQMASVRS 62 Query: 65 LLCLTHTKAAAAEMSHRV 82 +L +T T AA EM R+ Sbjct: 63 ILAVTFTNKAAKEMQTRL 80 >gi|323359567|ref|YP_004225963.1| superfamily I DNA and RNA helicase [Microbacterium testaceum StLB037] gi|323275938|dbj|BAJ76083.1| superfamily I DNA and RNA helicase [Microbacterium testaceum StLB037] Length = 1064 Score = 42.7 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 30/55 (54%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 Q++A P RS V GSGKT LV RV RL+ + P +L LT T+ A + Sbjct: 41 QVVAWAPERSGVVVGAPGSGKTSTLVARVRRLVESGVDPDDILVLTPTRPGATAL 95 >gi|315293210|gb|EFU52562.1| DNA helicase II [Escherichia coli MS 153-1] Length = 699 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 39/128 (30%) Query: 44 KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102 KT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 14 KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 59 Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162 + GG+ V T H +++ ++AN+ F I D Sbjct: 60 ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 95 Query: 163 EQSKKLIE 170 E +L++ Sbjct: 96 EDQLRLLK 103 >gi|300939966|ref|ZP_07154595.1| DNA helicase II [Escherichia coli MS 21-1] gi|300455228|gb|EFK18721.1| DNA helicase II [Escherichia coli MS 21-1] gi|315284765|gb|EFU44210.1| DNA helicase II [Escherichia coli MS 110-3] Length = 695 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 39/128 (30%) Query: 44 KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102 KT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 10 KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 55 Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162 + GG+ V T H +++ ++AN+ F I D Sbjct: 56 ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 91 Query: 163 EQSKKLIE 170 E +L++ Sbjct: 92 EDQLRLLK 99 >gi|300985670|ref|ZP_07177557.1| DNA helicase II [Escherichia coli MS 45-1] gi|300408054|gb|EFJ91592.1| DNA helicase II [Escherichia coli MS 45-1] Length = 699 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 39/128 (30%) Query: 44 KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102 KT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 14 KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 59 Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162 + GG+ V T H +++ ++AN+ F I D Sbjct: 60 ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 95 Query: 163 EQSKKLIE 170 E +L++ Sbjct: 96 EDQLRLLK 103 >gi|300979415|ref|ZP_07174544.1| DNA helicase II [Escherichia coli MS 200-1] gi|300308006|gb|EFJ62526.1| DNA helicase II [Escherichia coli MS 200-1] Length = 698 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 39/128 (30%) Query: 44 KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102 KT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 13 KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 58 Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162 + GG+ V T H +++ ++AN+ F I D Sbjct: 59 ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 94 Query: 163 EQSKKLIE 170 E +L++ Sbjct: 95 EDQLRLLK 102 >gi|308235914|ref|ZP_07666651.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis ATCC 14018] Length = 956 Score = 42.7 bits (99), Expect = 0.046, Method: Composition-based stats. Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 3/53 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ +LAN A PS +L +T T AAAEM R+ +I Sbjct: 113 IGAGAGSGKTRVLTRRI-AWILANRKAWPSQILAITFTNKAAAEMRERLASLI 164 >gi|229090274|ref|ZP_04221519.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-42] gi|228693054|gb|EEL46770.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-42] Length = 681 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|70726047|ref|YP_252961.1| ATP-depentend DNA helicase [Staphylococcus haemolyticus JCSC1435] gi|68446771|dbj|BAE04355.1| ATP-depentend DNA helicase [Staphylococcus haemolyticus JCSC1435] Length = 731 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ EQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LVNNMNKEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63 Query: 74 AAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 64 AAKEMKERVEQLV 76 >gi|319950042|ref|ZP_08024010.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4] gi|319436292|gb|EFV91444.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4] Length = 511 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 3/65 (4%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAE 77 T+ + + + PT V A AG+GKT + RV+ L+AN H P +L LT T+ AA + Sbjct: 20 TREQAEVIAGPTEPTLVLAGAGAGKTETMAARVV-WLVANGHARPGEILGLTFTRKAAQQ 78 Query: 78 MSHRV 82 +S R+ Sbjct: 79 LSRRI 83 >gi|260424687|ref|ZP_05732964.2| ATP-dependent DNA helicase PcrA [Dialister invisus DSM 15470] gi|260402848|gb|EEW96395.1| ATP-dependent DNA helicase PcrA [Dialister invisus DSM 15470] Length = 746 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 28/53 (52%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT L R+ +L P +L +T T AA EM RV ++ A Sbjct: 34 IMAGAGSGKTKALTCRIAYMLEQGIRPQNILAITFTNKAAQEMRERVHHLVGA 86 >gi|290580138|ref|YP_003484530.1| putative exonuclease [Streptococcus mutans NN2025] gi|254997037|dbj|BAH87638.1| putative exonuclease [Streptococcus mutans NN2025] Length = 1212 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 29/140 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++++R++ +L L T T AA E+ R+ + IT L+++ Sbjct: 45 VSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELKERLEKKITEQLRLTND 104 Query: 96 -----ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 LS ++ +Q + T+ AF + ++ Q+ Sbjct: 105 TALKQFLSEQLLGLQTA------------------------DIGTMDAFTQKLVTQYGYT 140 Query: 151 ANITSHFAIADEEQSKKLIE 170 I+ +F I ++ + L++ Sbjct: 141 LGISPNFRILQDKSEQDLLK 160 >gi|254726268|ref|ZP_05188050.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus anthracis str. A1055] Length = 688 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|226320834|ref|ZP_03796387.1| ATP-dependent DNA helicase [Borrelia burgdorferi 29805] gi|226233776|gb|EEH32504.1| ATP-dependent DNA helicase [Borrelia burgdorferi 29805] Length = 242 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 30/53 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT ++ R+ LLL +L LT T AA EM R+ +I+ + Sbjct: 28 IIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANEMKDRIKKILKS 80 >gi|29840740|ref|NP_829846.1| ATP-dependent helicase PcrA [Chlamydophila caviae GPIC] gi|29835090|gb|AAP05724.1| ATP-dependent helicase PcrA [Chlamydophila caviae GPIC] Length = 637 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 L S+ Q+ A + P V A AG+GKT ++ R+L L+ P +L +T T A Sbjct: 2 LTSELNEAQIAAVTSPLSPTLVLAGAGAGKTRVVTCRILHLINEGIAPKEILAVTFTNKA 61 Query: 75 AAEMSHRVL 83 A E+ R+L Sbjct: 62 AKELKERIL 70 >gi|326791343|ref|YP_004309164.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM 5427] gi|326542107|gb|ADZ83966.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM 5427] Length = 837 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AG+GKT ++ R L+ P +LCLT T AA EM R+ Sbjct: 26 VLAPAGTGKTKVIALRTAYLVQHQQEPEKILCLTFTNKAAKEMKERI 72 >gi|296114709|ref|ZP_06833360.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769] gi|295978743|gb|EFG85470.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769] Length = 166 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 31/51 (60%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT+ L RV L+ + A P +L LT ++ A+ EM+ RV I Sbjct: 44 VIAGAGSGKTNTLAHRVAHLIASGADPRRILLLTFSRRASVEMTRRVERIC 94 >gi|290473827|ref|YP_003466701.1| DNA helicase IV [Xenorhabdus bovienii SS-2004] gi|289173134|emb|CBJ79907.1| DNA helicase IV [Xenorhabdus bovienii SS-2004] Length = 687 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPS 63 + E +TI+ +S+ + +S V A AGSGKT +L+ R LLL A P Sbjct: 183 QQYAEFFQTIETTPLNRSQCQAVVNGEKSILVLAGAGSGKTSVLIARAGWLLLRQQALPE 242 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITA 88 +L L + AA EM+ R+ E + A Sbjct: 243 QVLLLAFGRQAADEMNKRIQERLGA 267 >gi|261315587|ref|ZP_05954784.1| UvrD/REP helicase [Brucella pinnipedialis M163/99/10] gi|261304613|gb|EEY08110.1| UvrD/REP helicase [Brucella pinnipedialis M163/99/10] Length = 580 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 3/83 (3%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 Q+H E D + EQ A T V A AG+GKT +L R+ +L A+PS + Sbjct: 6 QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 64 Query: 66 LCLTHTKAAAAEMSHRVLEIITA 88 L +T T AA EM R+ ++ Sbjct: 65 LAVTFTNKAAREMKERIGHLVGG 87 >gi|311114987|ref|YP_003986208.1| ATP-dependent DNA helicase PcrA [Gardnerella vaginalis ATCC 14019] gi|310946481|gb|ADP39185.1| ATP-dependent DNA helicase PcrA [Gardnerella vaginalis ATCC 14019] Length = 964 Score = 42.7 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 3/53 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ +LAN A PS +L +T T AAAEM R+ +I Sbjct: 121 IGAGAGSGKTRVLTRRI-AWILANRKAWPSQILAITFTNKAAAEMRERLASLI 172 >gi|126437275|ref|YP_001072966.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. JLS] gi|126237075|gb|ABO00476.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. JLS] Length = 784 Score = 42.7 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 40/136 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ LL A + +L +T T AAAEM RV+ +I Sbjct: 40 IVAGAGSGKTAVLTRRIAYLLAARDVGVGQVLAITFTNKAAAEMRERVVGLIG------- 92 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 +AR + V T H+ C I++ Q L + Sbjct: 93 --------------------PRARSMW-----------VATFHSTCVRILRNQASLLPGL 121 Query: 154 TSHFAIADEEQSKKLI 169 S+F+I D + S++L+ Sbjct: 122 NSNFSIYDADDSRRLL 137 >gi|325963968|ref|YP_004241874.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans Sphe3] gi|323470055|gb|ADX73740.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans Sphe3] Length = 1201 Score = 42.7 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 55/216 (25%), Positives = 88/216 (40%), Gaps = 38/216 (17%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77 T + + S P V A AGSGKT + RV+ L+AN P +L +T T+ AA E Sbjct: 49 TPEQSAIISSPLAPRLVIAGAGSGKTATMADRVV-WLVANGWVKPEEVLGVTFTRKAAGE 107 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKK--PNKSDMSKARHLLITILETPGGLKVQT 135 ++ R+ + A L+ + +++ Q + P+ S A LE KV T Sbjct: 108 LASRIRAKLAALQRLAGQ---DTVSQDQENRLFPDGLPGSDA-------LEP----KVST 153 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-------------AKKSTLASIML 182 H+F I+ + L + + Q+ +L E A KSTL ++ Sbjct: 154 YHSFASGIVSDYGLRLGVERDVVLLGGAQAWQLASEVVEAYDGEYGHFRAAKSTLVKAVI 213 Query: 183 DNNEELKKAFYEILEISNDEDIETLISDIISNRTAL 218 E + E ED+E + +S+ AL Sbjct: 214 QLAGECAEHLQE------PEDVEAWLMARLSDFEAL 243 >gi|307266291|ref|ZP_07547831.1| UvrD/REP helicase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918669|gb|EFN48903.1| UvrD/REP helicase [Thermoanaerobacter wiegelii Rt8.B1] Length = 440 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 52/138 (37%), Gaps = 40/138 (28%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT +L +R+ L+ PS +L +T T AA EM RV + Sbjct: 27 AGAGSGKTRVLTRRIAYLIKEKKVSPSNILAITFTNKAAEEMKTRVED------------ 74 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 +L G L V T H+ C I+++ + + Sbjct: 75 ---------------------------LLGYIGDLWVSTFHSACVRILRRDIDKIGYDRN 107 Query: 157 FAIADEEQSKKLIEEAKK 174 F I D K LI+E K Sbjct: 108 FVIFDTTDQKALIQECLK 125 >gi|304373063|ref|YP_003856272.1| ATP-dependent helicase PcrA [Mycoplasma hyorhinis HUB-1] gi|304309254|gb|ADM21734.1| ATP-dependent helicase PcrA [Mycoplasma hyorhinis HUB-1] Length = 754 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 84/204 (41%), Gaps = 54/204 (26%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AG+GKT +L +++ L+ A +L LT T AA EM RV +I A ++ Sbjct: 39 AGAGTGKTSVLTKKIAYLIAAKITTAKKILALTFTNKAANEMKERVKNVIGADAN----- 93 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM----QQFP---- 148 ET K+ T H+ C I+ QQF Sbjct: 94 -----------------------------ET----KIFTFHSLCNLILKIESQQFKKIKE 120 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL---KKAFYEILEISNDEDIE 205 E N+ +F I DE KK++++ + S+ +NEE+ +KA I + N E Sbjct: 121 FE-NLDKNFNIIDERDQKKILKDVYEKLQFSL---SNEEIPNFRKAIDFISYVKNKELTF 176 Query: 206 TLISDIISNRTALKLIFFFFSYLW 229 I N T KL+ + +Y++ Sbjct: 177 EQIQANAQNSTEKKLVKIYKNYVY 200 >gi|296271994|ref|YP_003654625.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299] gi|296096169|gb|ADG92119.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299] Length = 684 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 35/69 (50%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 +S+Q A S + A AGSGKT + R+ L+ P+++L LT T AA EM Sbjct: 10 NESQQKAAKHIDGSLLILAGAGSGKTKTITTRLAYLISIGIDPTSILTLTFTNKAATEMR 69 Query: 80 HRVLEIITA 88 R +I + Sbjct: 70 ERAYAMIGS 78 >gi|150024958|ref|YP_001295784.1| ATP-dependent DNA helicase UvrD [Flavobacterium psychrophilum JIP02/86] gi|149771499|emb|CAL42968.1| ATP-dependent DNA helicase UvrD [Flavobacterium psychrophilum JIP02/86] Length = 777 Score = 42.7 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 29/51 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ N +L LT T AA EM R+ +I+ Sbjct: 25 VIAGAGSGKTRVLTVRIANLMSQNVDAFNILALTFTNKAAREMKKRIADIV 75 >gi|124026183|ref|YP_001015299.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. NATL1A] gi|123961251|gb|ABM76034.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str. NATL1A] Length = 1261 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 26/153 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT L VLRLL + + +L ++ T+A A+E+ R++E + L+ Sbjct: 21 IEASAGTGKTFSLSHLVLRLLTEKEYSINEILVVSFTEATASEIKARIIERLI----LAL 76 Query: 95 EILSAEITKIQGKKPNKSD-----------MSKAR-----HLLITILETPGGLKVQTIHA 138 +I+ + T + KP+K D SK R LL+ LE + TIH Sbjct: 77 KIIESINTTV---KPHKIDNVLNEWVDLNITSKERALYIASLLLEALERIDNADITTIHG 133 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 FC +++ +E + +I E+ S LI E Sbjct: 134 FCSKTLRRESIENGNNLNPSI--EKDSNSLINE 164 >gi|254252756|ref|ZP_04946074.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Burkholderia dolosa AUO158] gi|124895365|gb|EAY69245.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Burkholderia dolosa AUO158] Length = 1238 Score = 42.7 bits (99), Expect = 0.047, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 7/118 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 26 IEASAGTGKTWNICALYVRLLLEKDLGADQILVVTFTKAATAELHERIRGRLAQLAHALD 85 Query: 95 ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + A + + + D S A + L + TIHAFC+ +Q+ Sbjct: 86 TGDDGGDPFVARLLETTLGEHGALDASTAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143 >gi|299136332|ref|ZP_07029516.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8] gi|298602456|gb|EFI58610.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8] Length = 982 Score = 42.7 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 45/144 (31%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT ++ R+ L+ A P ++L +T T AA EM+ RV E I S L+ Sbjct: 69 AGAGSGKTRVITHRIAYLIKERGAAPDSILAVTFTNKAAKEMAERV-EKILGHSTLASPT 127 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA----- 151 L+ T H+FC ++++ +EA Sbjct: 128 LA------------------------------------TFHSFCVRVLRR-DIEALRVGN 150 Query: 152 -NITSHFAIADEEQSKKLIEEAKK 174 +T FAI DE + ++++A K Sbjct: 151 VGLTRSFAIYDENDQQAVVKQALK 174 >gi|288919731|ref|ZP_06414058.1| UvrD/REP helicase [Frankia sp. EUN1f] gi|288348920|gb|EFC83170.1| UvrD/REP helicase [Frankia sp. EUN1f] Length = 733 Score = 42.7 bits (99), Expect = 0.048, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ LL A P +L +T T AA EM RV ++ Sbjct: 94 VVAGAGSGKTRVLTHRIAYLLAARGVRPGEILAITFTNKAAGEMKERVEALV 145 >gi|270297067|ref|ZP_06203266.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273054|gb|EFA18917.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1112 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 11/133 (8%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAW-----S 90 A+AGSGKT L ++ L+ N H +L +T T A AEM R+L ++ W S Sbjct: 21 ASAGSGKTFTLAVEYIKHLIINPHAYRQILAVTFTNKATAEMKERILTQLYGIWKGAPSS 80 Query: 91 HLSDEILSAEITKIQGKKP----NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 E + KI+G+ +K +A L +L +V+TI +F +++M+ Sbjct: 81 EAYLERIKNYKLKIKGEGGGGLTDKEIRQRAGIALQYMLHDYSRFRVETIDSFFQSVMRN 140 Query: 147 FPLEANITSHFAI 159 E ++ + +I Sbjct: 141 LARELELSPNLSI 153 >gi|254493798|ref|ZP_05106969.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae 1291] gi|268594855|ref|ZP_06129022.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae 35/02] gi|268596765|ref|ZP_06130932.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae FA19] gi|268682226|ref|ZP_06149088.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID332] gi|226512838|gb|EEH62183.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae 1291] gi|268548244|gb|EEZ43662.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae 35/02] gi|268550553|gb|EEZ45572.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae FA19] gi|268622510|gb|EEZ54910.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID332] Length = 690 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 4/82 (4%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PST 64 F+ H + L +Q P +V A AGSGKT ++ Q++ L++ + P T Sbjct: 13 DFRRHQNMMKLNAQQLEAVRYLGGPL---FVLAGAGSGKTGVITQKIKHLIVNVGYLPHT 69 Query: 65 LLCLTHTKAAAAEMSHRVLEII 86 + +T T AAAEM RV +++ Sbjct: 70 VAAITFTNKAAAEMQERVAKML 91 >gi|281420327|ref|ZP_06251326.1| ATP-dependent DNA helicase PcrA [Prevotella copri DSM 18205] gi|281405629|gb|EFB36309.1| ATP-dependent DNA helicase PcrA [Prevotella copri DSM 18205] Length = 836 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L ++ LL P +++ LT T AA EM R+ +++ Sbjct: 24 VIAGAGSGKTRVLTYKIAYLLSQGMKPWSIMALTFTNKAAREMKERIGKLV 74 >gi|302346508|ref|YP_003814806.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845] gi|302150979|gb|ADK97240.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845] Length = 1100 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 4/138 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95 A+AGSGKT L + L++ +L +T T A EM R+L + +H L D Sbjct: 11 ASAGSGKTFTLASEYITLVVKYPQDYKKILAVTFTNKATQEMKTRILSQLYGIAHKLPDS 70 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 E + P + A L + +VQTI AF +++++ E N+T+ Sbjct: 71 QAYYEQVLRKTGFPELTIRENAAEALSLLTHHYNEFRVQTIDAFFQSVLRNLARELNLTA 130 Query: 156 HFAIA--DEEQSKKLIEE 171 + I DE+ + ++E Sbjct: 131 NLRIDLNDEQVEAQAVDE 148 >gi|224371114|ref|YP_002605278.1| PcrA1 [Desulfobacterium autotrophicum HRM2] gi|223693831|gb|ACN17114.1| PcrA1 [Desulfobacterium autotrophicum HRM2] Length = 619 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 ++L Q ++ L P A V A AGSGKT L +++ L+ P+ +L +T T Sbjct: 1 MELSEQQQTAVLHTGSP---ALVVAGAGSGKTRTLTAKIMHLIGQGFDPTRILAITFTNK 57 Query: 74 AAAEMSHRVLEI 85 AA EM R+ ++ Sbjct: 58 AAQEMKSRLYKL 69 >gi|315660158|ref|ZP_07913015.1| ATP-dependent DNA helicase PcrA [Staphylococcus lugdunensis M23590] gi|315494839|gb|EFU83177.1| ATP-dependent DNA helicase PcrA [Staphylococcus lugdunensis M23590] Length = 730 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 L++ EQ A T + A AGSGKT +L R+ LL P +L +T T Sbjct: 4 LVANMNDEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLNEKGVSPYNILAITFTNK 63 Query: 74 AAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 64 AAKEMKQRVEQLV 76 >gi|306833181|ref|ZP_07466311.1| ATP-dependent nuclease subunit A [Streptococcus bovis ATCC 700338] gi|304424755|gb|EFM27891.1| ATP-dependent nuclease subunit A [Streptococcus bovis ATCC 700338] Length = 1210 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 22/155 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT-AWSHLSD 94 VSA+AGSGKT ++V+R++ +L L T T AA E+ R+ + I+ A +D Sbjct: 45 VSASAGSGKTFVMVERIIDKILRGVTIDQLFISTFTVKAAGELKERIEKKISQALQETTD 104 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +D+ + + L+T + T+ AF + ++ Q+ I+ Sbjct: 105 -----------------NDLKNYLNEQLLGLQTA---DIGTMDAFTQKLVNQYGYTLGIS 144 Query: 155 SHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 F I D+ + L E + M NN EL Sbjct: 145 PTFRIMTDKSEQDILKNEVFFDLFSDYMTGNNAEL 179 >gi|260425183|ref|ZP_05779176.1| ATP-dependent nuclease subunit A [Dialister invisus DSM 15470] gi|260404424|gb|EEW97971.1| ATP-dependent nuclease subunit A [Dialister invisus DSM 15470] Length = 1285 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRV 82 +SA AGSGKT +L +R+ +L+ P+ LL LT T+A+A EM R+ Sbjct: 23 LSAAAGSGKTAVLTERIKKLITDMDDPADITELLVLTFTRASAGEMKTRI 72 >gi|229826175|ref|ZP_04452244.1| hypothetical protein GCWU000182_01547 [Abiotrophia defectiva ATCC 49176] gi|229789045|gb|EEP25159.1| hypothetical protein GCWU000182_01547 [Abiotrophia defectiva ATCC 49176] Length = 768 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 43/171 (25%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ L+ P +L LT T AA EM RV E+I Sbjct: 24 ILAGAGSGKTRVLTRRIAYLIKEYGVSPWNILALTFTNKAAREMRERVDELIE------- 76 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E + V T H+ C ++++F + Sbjct: 77 -------------------------------EGAENIWVSTFHSACVKMLRRFIDKIGYD 105 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 F I D + +K ++ K L ++ +DN E +K ++ + ++ I+ Sbjct: 106 RSFNIYDTDDTKAVV----KQVLKALNIDNKEFPEKTCLNVISNAKNDFID 152 >gi|222528367|ref|YP_002572249.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725] gi|222455214|gb|ACM59476.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725] Length = 951 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 30/128 (23%) Query: 37 SANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 +A+AG GKT + + L+ + A PS ++C+T+T+ AA E+ +R II+ + Sbjct: 8 TASAGCGKTESIANLYIDLINSQKALPSEIVCITYTEKAARELKNR---IISKAKQRGLD 64 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +L+ I+KIQ ++TIH+FC +++ + A + + Sbjct: 65 LLT--ISKIQNS------------------------HIKTIHSFCMYLLRFYWAWAKVDT 98 Query: 156 HFAIADEE 163 +F I E+ Sbjct: 99 NFKIVPEQ 106 >gi|88797135|ref|ZP_01112725.1| DNA helicase II [Reinekea sp. MED297] gi|88780004|gb|EAR11189.1| DNA helicase II [Reinekea sp. MED297] Length = 720 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ A A P ++L +T T AA EM RV ++ A S Sbjct: 26 VLAGAGSGKTRVLTHRIGWLIAAGLASPYSVLAVTFTNKAAREMKSRVEALLEAPSQ--- 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 GL + T H +++ +A + Sbjct: 83 -----------------------------------GLWIGTFHGLAHRLLKAHWQQAKLP 107 Query: 155 SHFAIADEEQSKKLIE 170 HF + D + +L++ Sbjct: 108 QHFQVMDSDDQLRLVK 123 >gi|269966191|ref|ZP_06180280.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio alginolyticus 40B] gi|269829106|gb|EEZ83351.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio alginolyticus 40B] Length = 1227 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 23/133 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT + LRLLL + T +L +T T+AA AE+ R+ Sbjct: 38 IEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRAR 97 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 I A SD ++ + + D +A +L+ V TIH F Sbjct: 98 IHDARIAFARGQSSDPVIQPLLNEF-------DDHKQAAEILLQAERQMDEAAVYTIHGF 150 Query: 140 CEAIMQQFPLEAN 152 C+ ++ Q E+ Sbjct: 151 CQRMLTQNAFESG 163 >gi|317124193|ref|YP_004098305.1| ATP-dependent DNA helicase PcrA [Intrasporangium calvum DSM 43043] gi|315588281|gb|ADU47578.1| ATP-dependent DNA helicase PcrA [Intrasporangium calvum DSM 43043] Length = 854 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ LL A P +L +T T AAAEM RV ++ Sbjct: 100 IVAGAGSGKTRVLTHRIAWLLGKRGAQPGQILAITFTNKAAAEMRERVEALV 151 >gi|268599073|ref|ZP_06133240.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae MS11] gi|268603757|ref|ZP_06137924.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID1] gi|268684377|ref|ZP_06151239.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-92-679] gi|268686698|ref|ZP_06153560.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-93-1035] gi|268583204|gb|EEZ47880.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae MS11] gi|268587888|gb|EEZ52564.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID1] gi|268624661|gb|EEZ57061.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-92-679] gi|268626982|gb|EEZ59382.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-93-1035] Length = 690 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 4/82 (4%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PST 64 F+ H + L +Q P +V A AGSGKT ++ Q++ L++ + P T Sbjct: 13 DFRRHQNMMKLNAQQLEAVRYLGGPL---FVLAGAGSGKTGVITQKIKHLIVNVGYLPHT 69 Query: 65 LLCLTHTKAAAAEMSHRVLEII 86 + +T T AAAEM RV +++ Sbjct: 70 VAAITFTNKAAAEMQERVAKML 91 >gi|153806585|ref|ZP_01959253.1| hypothetical protein BACCAC_00855 [Bacteroides caccae ATCC 43185] gi|149131262|gb|EDM22468.1| hypothetical protein BACCAC_00855 [Bacteroides caccae ATCC 43185] Length = 817 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 11/102 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII--------- 86 V A AGSGKT +L ++ LL +P +L LT T AA EM R+ + Sbjct: 26 VIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNKAAREMKERIARQVGMERARYLW 85 Query: 87 -TAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILE 126 + + IL AE + I K D + ++ LLITI++ Sbjct: 86 MGTFHSIFSRILRAEASYIGFTSKFTIYDTADSKSLLITIID 127 >gi|15611914|ref|NP_223565.1| putative ATP-dependent helicase [Helicobacter pylori J99] gi|4155417|gb|AAD06425.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99] Length = 676 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 5/79 (6%) Query: 19 QTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ + + A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKAASALQGHNLIIASAGTGKTSTIVGRILHLLNNGIKPEEILLLTFTNKASNE 65 Query: 78 MSHRVLEIITAWSHLSDEI 96 M RV +S LS +I Sbjct: 66 MIARV----AKYSKLSSKI 80 >gi|254708085|ref|ZP_05169913.1| DNA helicase II [Brucella pinnipedialis M163/99/10] Length = 611 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 3/83 (3%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 Q+H E D + EQ A T V A AG+GKT +L R+ +L A+PS + Sbjct: 37 QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95 Query: 66 LCLTHTKAAAAEMSHRVLEIITA 88 L +T T AA EM R+ ++ Sbjct: 96 LAVTFTNKAAREMKERIGHLVGG 118 >gi|288942739|ref|YP_003444979.1| UvrD/REP helicase [Allochromatium vinosum DSM 180] gi|288898111|gb|ADC63947.1| UvrD/REP helicase [Allochromatium vinosum DSM 180] Length = 732 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 40/152 (26%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 + +++DP + A AGSGKT +LV R+ LL + P ++L +T T AA EM R+ Sbjct: 16 EAVSADPGH-LLILAGAGSGKTRVLVHRIAWLLQVQQVQPWSILAVTFTNKAAREMRSRL 74 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 DE+L + GG+ V T H Sbjct: 75 -----------DEMLGTPV---------------------------GGMWVGTFHGLAHR 96 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 ++ +A + F I D + +LI+ K Sbjct: 97 FLRAHWQDAGLPQQFQILDSDDQLRLIKRLLK 128 >gi|240115748|ref|ZP_04729810.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae PID18] gi|268601426|ref|ZP_06135593.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID18] gi|268585557|gb|EEZ50233.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID18] Length = 274 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 75/188 (39%), Gaps = 49/188 (26%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 20 FVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKMLP------ 73 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 KP GL + T H+ I+++ Sbjct: 74 --------------KPQTR-----------------GLTICTFHSLGMKILREEANHIGY 102 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND----EDIETLIS 209 +F+I D S K+I E T E + KA ++I ND ED+ S Sbjct: 103 KKNFSILDSTDSAKIIGELLGGT-------GKEAVFKAQHQISLWKNDLKTPEDVVQTAS 155 Query: 210 DIISNRTA 217 ++ +TA Sbjct: 156 NVWEQQTA 163 >gi|121605345|ref|YP_982674.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2] gi|120594314|gb|ABM37753.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2] Length = 1141 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Query: 20 TKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T Q+ A++ +A+ + A G+GKT LVQR+ LL P ++L LT + AA E+ Sbjct: 200 TDLTQIAAANHRNTAFQLQAGPGTGKTRTLVQRIQSLLTDGVDPMSILVLTFSNKAANEL 259 Query: 79 SHRV 82 S R+ Sbjct: 260 SERL 263 >gi|319794637|ref|YP_004156277.1| pyridoxaL-5'-phosphate-dependent protein beta subunit [Variovorax paradoxus EPS] gi|315597100|gb|ADU38166.1| Pyridoxal-5'-phosphate-dependent protein beta subunit [Variovorax paradoxus EPS] Length = 358 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 33/168 (19%), Positives = 72/168 (42%), Gaps = 21/168 (12%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 W+ AG+G T + R LR + T +C+ + + + +A+ D Sbjct: 192 WIVVGAGTGGTSATIGRYLRYRCHD----TQVCVPDPEGS----------VFSAYHRTGD 237 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP--LEAN 152 L+A ++I+G + + S R L+ ++E P V +HA + ++ N Sbjct: 238 TTLTAVGSRIEGIGRPRVEPSFIRTLVDRMIEVPNLDSVAAMHALSALLGRKVGPSTGTN 297 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 A+ADE ++ ++ ++ S++ D+ E ++++ + N Sbjct: 298 FIGMLAVADEMRAA-----GRQGSILSLLCDSGERYLPSYHDAAWVKN 340 >gi|237820788|ref|ZP_04596633.1| recombination helicase AddA [Streptococcus pneumoniae CCRI 1974M2] Length = 1216 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L L S L T T AA E+ R+ + I+ +D+ Sbjct: 45 VSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|220903308|ref|YP_002478620.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867607|gb|ACL47942.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 1174 Score = 42.4 bits (98), Expect = 0.050, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A G+GKT +LV R+ LL P LL +T T+ AA EM R + A H+ D Sbjct: 538 VQAGPGAGKTRVLVGRIQHLLDQGTAPHKLLAVTFTRRAANEMRQR---LAAALPHMQD 593 >gi|297564148|ref|YP_003683121.1| ATP-dependent DNA helicase PcrA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848597|gb|ADH70615.1| ATP-dependent DNA helicase PcrA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 781 Score = 42.4 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 11/78 (14%) Query: 20 TKSEQLLA--SDPTRSA--------WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCL 68 + EQLL + P R A + A AGSGKT +L R+ L+ A P +L + Sbjct: 2 SSQEQLLEGLNGPQRDAVTHSGSPLLIVAGAGSGKTRVLTHRIAHLMAARGVRPGEILAI 61 Query: 69 THTKAAAAEMSHRVLEII 86 T T AAAEM R+ ++ Sbjct: 62 TFTNKAAAEMRERIQALL 79 >gi|229817712|ref|ZP_04447994.1| hypothetical protein BIFANG_02984 [Bifidobacterium angulatum DSM 20098] gi|229785501|gb|EEP21615.1| hypothetical protein BIFANG_02984 [Bifidobacterium angulatum DSM 20098] Length = 889 Score = 42.4 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ +L A PS +L +T T AAAEM R+ +I Sbjct: 55 IGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAAEMRERLTALI 106 >gi|217032458|ref|ZP_03437951.1| hypothetical protein HPB128_175g19 [Helicobacter pylori B128] gi|298736137|ref|YP_003728662.1| Rep helicase [Helicobacter pylori B8] gi|216945866|gb|EEC24486.1| hypothetical protein HPB128_175g19 [Helicobacter pylori B128] gi|298355326|emb|CBI66198.1| Rep helicase, single-stranded DNA-dependent ATPase (Rep) [Helicobacter pylori B8] Length = 675 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ + V A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65 Query: 78 MSHRVLEIITAWSHL 92 M RV + + S + Sbjct: 66 MIARVAKYFKSSSKI 80 >gi|225861093|ref|YP_002742602.1| recombination helicase AddA [Streptococcus pneumoniae Taiwan19F-14] gi|298230417|ref|ZP_06964098.1| recombination helicase AddA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255440|ref|ZP_06979026.1| recombination helicase AddA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502847|ref|YP_003724787.1| ATP-dependent deoxyribonuclease subunit A [Streptococcus pneumoniae TCH8431/19A] gi|225727192|gb|ACO23043.1| recombination helicase AddA [Streptococcus pneumoniae Taiwan19F-14] gi|298238442|gb|ADI69573.1| ATP-dependent deoxyribonuclease, subunit A [Streptococcus pneumoniae TCH8431/19A] Length = 1216 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L L S L T T AA E+ R+ + I+ +D+ Sbjct: 45 VSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|325300614|ref|YP_004260531.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170] gi|324320167|gb|ADY38058.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170] Length = 753 Score = 42.4 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 ++ +D +++++ E +L D + V A AGSGKT +L ++ LL P ++L LT Sbjct: 2 ADFLDGLNESQREAVLYVDG--PSLVIAGAGSGKTRVLTYKIAYLLDQGYEPWSILALTF 59 Query: 71 TKAAAAEMSHRV 82 T AA EM R+ Sbjct: 60 TNKAAREMKERI 71 >gi|307067686|ref|YP_003876652.1| ATP-dependent exoDNAse (exonuclease V) subunit beta [Streptococcus pneumoniae AP200] gi|306409223|gb|ADM84650.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Streptococcus pneumoniae AP200] Length = 1216 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L L S L T T AA E+ R+ + I+ +D+ Sbjct: 45 VSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|302340417|ref|YP_003805623.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293] gi|301637602|gb|ADK83029.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293] Length = 1137 Score = 42.4 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81 +Q A+ SA VSA AGSGKT IL +R + L+ A +L LT T+ AAAEM R Sbjct: 8 QQQEAAFTHHSAVVSAGAGSGKTTILSRRFVYLVETGRASVDEILTLTFTRKAAAEMYER 67 Query: 82 V 82 + Sbjct: 68 I 68 >gi|300309775|ref|YP_003773867.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1] gi|300072560|gb|ADJ61959.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae SmR1] Length = 759 Score = 42.4 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 P +SA + A AGSGKT +L R+ L+ PS +L +T T AA EM+ R+ Sbjct: 19 PAQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPSGILAVTFTNKAAKEMTARL 72 >gi|289550376|ref|YP_003471280.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus lugdunensis HKU09-01] gi|289179908|gb|ADC87153.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus lugdunensis HKU09-01] Length = 746 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 L++ EQ A T + A AGSGKT +L R+ LL P +L +T T Sbjct: 4 LVANMNDEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLNEKGVSPYNILAITFTNK 63 Query: 74 AAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 64 AAKEMKQRVEQLV 76 >gi|254779514|ref|YP_003057620.1| ATP-dependent single-stranded DNA helicase [Helicobacter pylori B38] gi|254001426|emb|CAX29421.1| ATP-dependent single-stranded DNA helicase [Helicobacter pylori B38] Length = 675 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ + V A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65 Query: 78 MSHRVLEIITAWSHL 92 M RV + + S + Sbjct: 66 MIARVAKYFKSSSKI 80 >gi|117927584|ref|YP_872135.1| ATP-dependent DNA helicase PcrA [Acidothermus cellulolyticus 11B] gi|117648047|gb|ABK52149.1| ATP-dependent DNA helicase PcrA [Acidothermus cellulolyticus 11B] Length = 763 Score = 42.4 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L +R+ LL A PS +L +T T AA EM R+ Sbjct: 41 VVAGAGSGKTRVLTRRIAYLLRARGVAPSEILAITFTNKAAGEMKRRL 88 >gi|262393458|ref|YP_003285312.1| exodeoxyribonuclease V subunit beta [Vibrio sp. Ex25] gi|262337052|gb|ACY50847.1| exodeoxyribonuclease V beta chain [Vibrio sp. Ex25] Length = 1224 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 23/133 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT + LRLLL + T +L +T T+AA AE+ R+ Sbjct: 35 IEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRAR 94 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 I A SD ++ + + D +A +L+ V TIH F Sbjct: 95 IHDARIAFARGQSSDPVIQPLLNEF-------DDHKQAAEILLQAERQMDEAAVYTIHGF 147 Query: 140 CEAIMQQFPLEAN 152 C+ ++ Q E+ Sbjct: 148 CQRMLTQNAFESG 160 >gi|229051608|ref|ZP_04195078.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH676] gi|228721719|gb|EEL73193.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH676] Length = 714 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 R A AGSGKT +L RV L+ +A+ S +L LT T+ AA EM R+ Sbjct: 90 RPVLAIAAAGSGKTRVLASRVGYLMCVAHVDASRILVLTFTRKAANEMKERI 141 >gi|148998405|ref|ZP_01825847.1| exonuclease RexA [Streptococcus pneumoniae SP11-BS70] gi|168576141|ref|ZP_02722035.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|168577182|ref|ZP_02722997.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|168577235|ref|ZP_02723036.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|168577251|ref|ZP_02723047.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|194397993|ref|YP_002037761.1| exonuclease RexA [Streptococcus pneumoniae G54] gi|251764542|sp|B5E4P5|ADDA_STRP4 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|147755802|gb|EDK62847.1| exonuclease RexA [Streptococcus pneumoniae SP11-BS70] gi|183577186|gb|EDT97714.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|183577191|gb|EDT97719.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|183577238|gb|EDT97766.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|183577934|gb|EDT98462.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|194357660|gb|ACF56108.1| exonuclease RexA [Streptococcus pneumoniae G54] Length = 1216 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L L S L T T AA E+ R+ + I+ +D+ Sbjct: 45 VSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|229496641|ref|ZP_04390355.1| ATP-dependent DNA helicase PcrA [Porphyromonas endodontalis ATCC 35406] gi|229316538|gb|EEN82457.1| ATP-dependent DNA helicase PcrA [Porphyromonas endodontalis ATCC 35406] Length = 809 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 ++ ++E +L D A V A AGSGKT +L ++ LL P L+ LT T AA Sbjct: 8 LNPAQAEAVLYDDG--PALVIAGAGSGKTRVLTYKLAHLLEEGYDPHKLMALTFTNKAAR 65 Query: 77 EMSHRVLEIITA 88 EM RV ++ + Sbjct: 66 EMLSRVESMVGS 77 >gi|203288066|ref|YP_002223081.1| exodeoxyribonuclease V, beta chain [Borrelia recurrentis A1] gi|201085286|gb|ACH94860.1| exodeoxyribonuclease V, beta chain [Borrelia recurrentis A1] Length = 1147 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 23/127 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT+ L + LL + P+ +L LT TK A EM R+L+ I H+ Sbjct: 16 IEASAGTGKTYTLEHIITNLLTTTMYTPNEILVLTFTKKATEEMHTRILKSI---EHIYQ 72 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +K +LL I E + + TI+ F + F +E Sbjct: 73 N-------------------AKTDNLLKNIYEQSNKIFISTINKFALYSLNNFQIETENF 113 Query: 155 SHFAIAD 161 S + + + Sbjct: 114 SKYTVKE 120 >gi|254370666|ref|ZP_04986671.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874988|ref|ZP_05247698.1| uvrD/REP helicase family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|151568909|gb|EDN34563.1| conserved hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254840987|gb|EET19423.1| uvrD/REP helicase family protein [Francisella tularensis subsp. tularensis MA00-2987] Length = 169 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 38/65 (58%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 ++++ D + A VSA AGSGKT L+ R+ L+ P+ +L L + K+A + + R+ Sbjct: 8 QKIINHDIAKHALVSAVAGSGKTQTLIARIGYLVSNQVAPNKILVLMYNKSAQLDFATRL 67 Query: 83 LEIIT 87 +++ Sbjct: 68 KKVLN 72 >gi|297622053|ref|YP_003710190.1| DNA helicase [Waddlia chondrophila WSU 86-1044] gi|297377354|gb|ADI39184.1| DNA helicase [Waddlia chondrophila WSU 86-1044] Length = 712 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V A AGSGKT ++ R+ L+ + S +L LT T AA EM R+ +I A SH+ Sbjct: 24 VLAGAGSGKTRVVTYRIAALIESGVPASQILGLTFTNKAAGEMQERIRKI--ANSHV 78 >gi|149006188|ref|ZP_01829900.1| exonuclease RexA [Streptococcus pneumoniae SP18-BS74] gi|307127336|ref|YP_003879367.1| recombination helicase AddA [Streptococcus pneumoniae 670-6B] gi|147761965|gb|EDK68927.1| exonuclease RexA [Streptococcus pneumoniae SP18-BS74] gi|306484398|gb|ADM91267.1| recombination helicase AddA [Streptococcus pneumoniae 670-6B] gi|332075086|gb|EGI85557.1| recombination helicase AddA [Streptococcus pneumoniae GA17545] Length = 1216 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L L S L T T AA E+ R+ + I+ +D+ Sbjct: 45 VSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|15639096|ref|NP_218542.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025336|ref|YP_001933108.1| Rep helicase, single-stranded DNA-dependent ATPase [Treponema pallidum subsp. pallidum SS14] gi|3322363|gb|AAC65097.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017911|gb|ACD70529.1| Rep helicase, single-stranded DNA-dependent ATPase [Treponema pallidum subsp. pallidum SS14] gi|291059520|gb|ADD72255.1| ATP-dependent helicase PcrA [Treponema pallidum subsp. pallidum str. Chicago] Length = 657 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 57/149 (38%), Gaps = 39/149 (26%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A AGSGKT ++ R+ +L S +L LT T AA EMS R Sbjct: 24 AGAGSGKTRVITARIAYMLECGILQSRILALTFTNKAAHEMSER---------------- 67 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157 I + GK + +S T HAF I+++ +F Sbjct: 68 ---IKALTGKPLRNTTVS-------------------TFHAFGVTILREHIHVLGWRKNF 105 Query: 158 AIADEEQSKKLIEEAKKST-LASIMLDNN 185 +I DE + LI EA K L +LD N Sbjct: 106 SIYDENDKRALIREAAKEVHLLPEVLDTN 134 >gi|86133361|ref|ZP_01051943.1| UvrD/REP helicase [Polaribacter sp. MED152] gi|85820224|gb|EAQ41371.1| UvrD/REP helicase [Polaribacter sp. MED152] Length = 774 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 +D +++ + + +L D + A AGSGKT +L R+ L+ + +L LT T Sbjct: 5 LDSLNEPQKQAVLQKDG--PMIIIAGAGSGKTRVLTYRIAHLMQSGVDAFNILSLTFTNK 62 Query: 74 AAAEMSHRVLEII 86 AA EM R+ ++ Sbjct: 63 AAREMKERIAGVV 75 >gi|311696294|gb|ADP99167.1| UvrD/REP helicase [marine bacterium HP15] Length = 721 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +LV R+ L+ + P T +L +T T AA EM +R+ +++ Sbjct: 27 VLAGAGSGKTRVLVHRIAWLMTVDRVPPTGILAVTFTNKAAKEMRYRIEQMM 78 >gi|224539562|ref|ZP_03680101.1| hypothetical protein BACCELL_04467 [Bacteroides cellulosilyticus DSM 14838] gi|224518843|gb|EEF87948.1| hypothetical protein BACCELL_04467 [Bacteroides cellulosilyticus DSM 14838] Length = 667 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 55/148 (37%), Gaps = 41/148 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT +L ++ LL P +L LT T AA EM R+ + D+ Sbjct: 26 VIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAAREMKERIAR------QVGDQ 79 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +ARHL + T H+ I+ TS Sbjct: 80 --------------------RARHLWMG-----------TFHSIFLRILHAEAANIGFTS 108 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLD 183 F I D SK L+ +S + + LD Sbjct: 109 QFTIYDTADSKSLV----RSIIKEMGLD 132 >gi|196047656|ref|ZP_03114862.1| ATP-dependent DNA helicase [Bacillus cereus 03BB108] gi|196021525|gb|EDX60226.1| ATP-dependent DNA helicase [Bacillus cereus 03BB108] Length = 263 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|254229524|ref|ZP_04922938.1| exodeoxyribonuclease V, beta subunit [Vibrio sp. Ex25] gi|151937989|gb|EDN56833.1| exodeoxyribonuclease V, beta subunit [Vibrio sp. Ex25] Length = 1227 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 23/133 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT + LRLLL + T +L +T T+AA AE+ R+ Sbjct: 38 IEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRAR 97 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 I A SD ++ + + D +A +L+ V TIH F Sbjct: 98 IHDARIAFARGQSSDPVIQPLLNEF-------DDHKQAAEILLQAERQMDEAAVYTIHGF 150 Query: 140 CEAIMQQFPLEAN 152 C+ ++ Q E+ Sbjct: 151 CQRMLTQNAFESG 163 >gi|222086413|ref|YP_002544947.1| DNA helicase II protein [Agrobacterium radiobacter K84] gi|221723861|gb|ACM27017.1| DNA helicase II protein [Agrobacterium radiobacter K84] Length = 828 Score = 42.4 bits (98), Expect = 0.054, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AG+GKT +L R+ +L N A PS +L +T T AA EM RV Sbjct: 73 VLAGAGTGKTRVLTTRIAHILSTNRAFPSQILAVTFTNKAAREMKERV 120 >gi|260584785|ref|ZP_05852530.1| ATP-dependent DNA helicase PcrA [Granulicatella elegans ATCC 700633] gi|260157442|gb|EEW92513.1| ATP-dependent DNA helicase PcrA [Granulicatella elegans ATCC 700633] Length = 755 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ +L HP +L +T T AA EM RV +++ Sbjct: 18 IMAGAGSGKTRVLTHRMAYILAEEEVHPWNILAITFTNKAAREMKERVSQLV 69 >gi|149198591|ref|ZP_01875635.1| UvrD/REP helicase [Lentisphaera araneosa HTCC2155] gi|149138306|gb|EDM26715.1| UvrD/REP helicase [Lentisphaera araneosa HTCC2155] Length = 645 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 27/45 (60%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKTH L RV +L+ + +L LT T+ AA EM R+ Sbjct: 22 AGAGTGKTHTLCCRVAKLIQSGVPAHKILMLTFTRKAAEEMKQRI 66 >gi|258545084|ref|ZP_05705318.1| UvrD/REP helicase [Cardiobacterium hominis ATCC 15826] gi|258519661|gb|EEV88520.1| UvrD/REP helicase [Cardiobacterium hominis ATCC 15826] Length = 1287 Score = 42.4 bits (98), Expect = 0.055, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 44/200 (22%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV---------- 82 A + A+AG+GKT L +LRLL+ + P ++ T T+ AAAEM RV Sbjct: 19 ALIEASAGTGKTWTLTGIILRLLIEGGYPPREIIATTFTRKAAAEMQQRVHKRLHALREN 78 Query: 83 LEIITAWSHLSDEI-------LSAEITKIQGKKPNKSDMSKARHLLITILETPG------ 129 L+ I A +L++E L+ + I G + D+ RHL++ + G Sbjct: 79 LKAIAA-RYLAEETVLNDDDGLATRLDDIIGG--SGGDLIN-RHLILNAVAKHGLDGLIA 134 Query: 130 -------------GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L + TI + C+ + +F LE I ++ +EE T Sbjct: 135 IFSRVESLQARLDELFIGTIDSLCQRWLAEFALETGNDERLQI---NENSPALEETIHDT 191 Query: 177 LASIMLDNNEELKKAFYEIL 196 L ++ +N++ + F ++L Sbjct: 192 LRRLLHENHQHDPETFAQML 211 >gi|254682605|ref|ZP_05146466.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus anthracis str. CNEVA-9066] Length = 280 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ +RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRNRV 115 >gi|251809891|ref|ZP_04824364.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis BCM-HMP0060] gi|282874545|ref|ZP_06283430.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis SK135] gi|251806556|gb|EES59213.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis BCM-HMP0060] gi|281296684|gb|EFA89193.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis SK135] Length = 729 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ SEQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LVKNMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63 Query: 74 AAAEMSHRV 82 AA EM+ RV Sbjct: 64 AAKEMNARV 72 >gi|255726244|ref|XP_002548048.1| predicted protein [Candida tropicalis MYA-3404] gi|240133972|gb|EER33527.1| predicted protein [Candida tropicalis MYA-3404] Length = 935 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A G+GKT +LV RV LL+ + P ++ T TK AA EM+ R+ ++ + D++ Sbjct: 36 AGPGTGKTKVLVSRVAHLLIVDKVRPDNMIVTTFTKKAANEMTDRLHRLLAGTNISVDKL 95 Query: 97 L 97 + Sbjct: 96 I 96 >gi|229125267|ref|ZP_04254369.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 95/8201] gi|228658193|gb|EEL13931.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 95/8201] Length = 714 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 R A AGSGKT +L RV L+ +A+ S +L LT T+ AA EM R+ Sbjct: 90 RPVLAIAAAGSGKTRVLASRVGYLMCVAHVDASRILVLTFTRKAANEMKERI 141 >gi|222151885|ref|YP_002561045.1| ATP-depentend DNA helicase [Macrococcus caseolyticus JCSC5402] gi|222121014|dbj|BAH18349.1| ATP-depentend DNA helicase [Macrococcus caseolyticus JCSC5402] Length = 721 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 + A AGSGKT +L R+ L+ + P +L +T T AA EM RV +II S + Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKDVSPYKILAITFTNKAAKEMKERVKKIIGDESDV 82 >gi|28899148|ref|NP_798753.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio parahaemolyticus RIMD 2210633] gi|260364728|ref|ZP_05777315.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus K5030] gi|260876768|ref|ZP_05889123.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus AN-5034] gi|260898155|ref|ZP_05906651.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus Peru-466] gi|28807372|dbj|BAC60637.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio parahaemolyticus RIMD 2210633] gi|308089095|gb|EFO38790.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus Peru-466] gi|308091467|gb|EFO41162.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus AN-5034] gi|308115342|gb|EFO52882.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus K5030] Length = 1227 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 23/133 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT + LRLLL + T +L +T T+AA AE+ R+ Sbjct: 38 IEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRAR 97 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 I A SD ++ + + D +A +L+ V TIH F Sbjct: 98 IHDARIAFARGQSSDPVIQPLLNEF-------DDHKQAAEILLQAERQMDEAAVYTIHGF 150 Query: 140 CEAIMQQFPLEAN 152 C+ ++ Q E+ Sbjct: 151 CQRMLTQNAFESG 163 >gi|254702135|ref|ZP_05163963.1| ATP-dependent DNA helicase pcrA [Brucella suis bv. 5 str. 513] gi|261752704|ref|ZP_05996413.1| UvrD/REP helicase [Brucella suis bv. 5 str. 513] gi|261742457|gb|EEY30383.1| UvrD/REP helicase [Brucella suis bv. 5 str. 513] Length = 858 Score = 42.4 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 Q+H E D + EQ A T V A AG+GKT +L R+ +L A+PS + Sbjct: 37 QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95 Query: 66 LCLTHTKAAAAEMSHRVLEII 86 L +T T AA EM R+ ++ Sbjct: 96 LAVTFTNKAAREMKERIGHLV 116 >gi|257793016|ref|YP_003186415.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479708|gb|ACV60026.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 706 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 T+D ++ + E A+ V A AGSGKT +L+ R+ L+ P +L T T+ Sbjct: 120 TLDQLNDAQREA--ATHKNGPCMVVAAAGSGKTAMLIARIQHLINQGVRPGDILACTFTR 177 Query: 73 AAAAEMSHRVLEII 86 AA EM+ R+L + Sbjct: 178 KAAQEMTDRLLAAV 191 >gi|203284532|ref|YP_002222272.1| exodeoxyribonuclease V, beta chain [Borrelia duttonii Ly] gi|201083975|gb|ACH93566.1| exodeoxyribonuclease V, beta chain [Borrelia duttonii Ly] Length = 1147 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 23/127 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT+ L + LL + P+ +L LT TK A EM R+L+ I H+ Sbjct: 16 IEASAGTGKTYTLEHIITNLLTTTMYTPNEILVLTFTKKATEEMHTRILKSI---EHIYQ 72 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +K +LL I E + + TI+ F + F +E Sbjct: 73 N-------------------AKTDNLLKNIYEQSNKIFISTINKFALYSLNNFQIETENF 113 Query: 155 SHFAIAD 161 S + + + Sbjct: 114 SKYTVKE 120 >gi|296188218|ref|ZP_06856610.1| ATP-dependent nuclease subunit A [Clostridium carboxidivorans P7] gi|296047344|gb|EFG86786.1| ATP-dependent nuclease subunit A [Clostridium carboxidivorans P7] Length = 1243 Score = 42.4 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 32/174 (18%) Query: 44 KTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100 KT +LV+R+++ + N LL +T T AAA+EM R+ Sbjct: 30 KTAVLVERIIQKITDNEDDVDVDKLLVVTFTNAAASEMRERI---------------GDA 74 Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160 I+K P ++ K LL + TIH+FC +++ ++ +F + Sbjct: 75 ISKKLEVMPESKNLQKQLMLL-------NKSNIMTIHSFCLQVIKNNFHIIDLDPNFRVC 127 Query: 161 DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI---SNDEDIETLISDI 211 DE +S L K+ T+ + D E+ + F ++++ ND +E +I D+ Sbjct: 128 DETESILL----KQETIDEVFEDKYEQSDEGFIQLVKCYGGKNDFKVENMILDL 177 >gi|291525748|emb|CBK91335.1| Superfamily I DNA and RNA helicases [Eubacterium rectale DSM 17629] Length = 763 Score = 42.4 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 79/195 (40%), Gaps = 45/195 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D++++ + E +L +D + A AGSGKT +L R L+ +P ++ +T T Sbjct: 3 LDMLNEQQREAVLTTDG--PLLILAGAGSGKTRVLTYRTAYLIDECGVNPYNIMAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +++ S + Sbjct: 61 KAAGEMRERIDDMVGYGSE--------------------------------------SIW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T H+ C I++++ ++F I D + K L+++ K + +D +K F Sbjct: 83 VSTFHSTCVRILRRYIDRLGYDTNFTIYDADDQKALMKDICK----RLEIDTKMYKEKMF 138 Query: 193 YEILEISNDEDIETL 207 ++ + DE I+ + Sbjct: 139 LNVISSAKDEMIDPI 153 >gi|260914154|ref|ZP_05920627.1| ATP-dependent helicase PcrA [Pasteurella dagmatis ATCC 43325] gi|260631787|gb|EEX49965.1| ATP-dependent helicase PcrA [Pasteurella dagmatis ATCC 43325] Length = 725 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 37/154 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLT 69 SE +D ++ + + + A P + V A AGSGKT +L R+ L+ +++ +T Sbjct: 4 SELLDGLNDKQRKAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIAVEGISEGSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM HR+ + +H S + Sbjct: 62 FTNKAAAEMRHRIESTLA--NHSSQRLF-------------------------------- 87 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE 163 G+ V T H+ +++ L+AN+ F I D + Sbjct: 88 GMWVGTFHSIAHRLLRAHHLDANLPQDFQILDSD 121 >gi|255523282|ref|ZP_05390252.1| recombination helicase AddA [Clostridium carboxidivorans P7] gi|255512936|gb|EET89206.1| recombination helicase AddA [Clostridium carboxidivorans P7] Length = 1226 Score = 42.4 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 32/174 (18%) Query: 44 KTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100 KT +LV+R+++ + N LL +T T AAA+EM R+ Sbjct: 30 KTAVLVERIIQKITDNEDDVDVDKLLVVTFTNAAASEMRERI---------------GDA 74 Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160 I+K P ++ K LL + TIH+FC +++ ++ +F + Sbjct: 75 ISKKLEVMPESKNLQKQLMLL-------NKSNIMTIHSFCLQVIKNNFHIIDLDPNFRVC 127 Query: 161 DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI---SNDEDIETLISDI 211 DE +S L K+ T+ + D E+ + F ++++ ND +E +I D+ Sbjct: 128 DETESILL----KQETIDEVFEDKYEQSDEGFIQLVKCYGGKNDFKVENMILDL 177 >gi|210135102|ref|YP_002301541.1| Rep helicase [Helicobacter pylori P12] gi|210133070|gb|ACJ08061.1| Rep helicase [Helicobacter pylori P12] Length = 675 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ ++ V A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKAALASKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65 Query: 78 MSHRVLEIITAWSHL 92 M RV + + S + Sbjct: 66 MIARVAKYFKSSSKI 80 >gi|158521072|ref|YP_001528942.1| exodeoxyribonuclease V, beta subunit [Desulfococcus oleovorans Hxd3] gi|158509898|gb|ABW66865.1| exodeoxyribonuclease V, beta subunit [Desulfococcus oleovorans Hxd3] Length = 1203 Score = 42.4 bits (98), Expect = 0.056, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII-TAWSHLS 93 V A+AG+GKT+ +V LRL+ +A +L +T+T+AA E+ ++ + A + Sbjct: 22 VEASAGTGKTYAIVGLFLRLIAETDAGVDNILAVTYTEAATQELKGKIRTALRKAATAFK 81 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 +S + K ++ + A L LE + TIH FC ++ +F E+ + Sbjct: 82 TGTMSGDPLIDGLLKKRETTRAVAARRLKRALEAFDQAAIFTIHGFCSRMLGEFAFESGV 141 >gi|89897835|ref|YP_514945.1| DNA/RNA helicase [Chlamydophila felis Fe/C-56] gi|89331207|dbj|BAE80800.1| DNA/RNA helicase [Chlamydophila felis Fe/C-56] Length = 636 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 P V A AG+GKT ++ R+L L+ P +L +T T AA E+ R+L Sbjct: 17 PLSPVLVLAGAGAGKTRVVTCRILHLIKEGIAPREILAVTFTNKAAKELKERIL 70 >gi|319788731|ref|YP_004090046.1| UvrD/REP helicase [Ruminococcus albus 7] gi|315450598|gb|ADU24160.1| UvrD/REP helicase [Ruminococcus albus 7] Length = 1231 Score = 42.4 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 3/69 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPST-LLCLTHTKA 73 +S T+ +Q R VSA AGSGKT +L++R++RLL A P+ LL +T T Sbjct: 3 VSWTEDQQKAIDSYGRGVTVSAAAGSGKTAVLIERIIRLLTDKEKAIPADRLLAVTFTID 62 Query: 74 AAAEMSHRV 82 AAA+M ++ Sbjct: 63 AAAQMRDKL 71 >gi|184200505|ref|YP_001854712.1| UvrD/REP helicase family protein [Kocuria rhizophila DC2201] gi|183580735|dbj|BAG29206.1| UvrD/Rep helicase family protein [Kocuria rhizophila DC2201] Length = 1145 Score = 42.4 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 23/168 (13%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPS 63 S Q+ +E + T+ + + + P V A AGSGKT + RV L+AN A P Sbjct: 14 SPQDIAEALGDFPPTEQQAEVIASPLTPRLVVAGAGSGKTTTMSDRV-TWLVANGLARPE 72 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L +T T+ AA E+S R+ + H ++P D + A Sbjct: 73 EILGVTFTRKAAGELSQRIATKLRMLRHAG-----------LIEEPGGDDDAPA------ 115 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 ++ P V T H++ ++++ + L I S + + Q+ +L E Sbjct: 116 AVQEP---TVSTYHSYANSLVRSYGLRLGIESDTVLLGQAQAWQLASE 160 >gi|253701545|ref|YP_003022734.1| UvrD/REP helicase [Geobacter sp. M21] gi|251776395|gb|ACT18976.1| UvrD/REP helicase [Geobacter sp. M21] Length = 678 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 +S+ EQL A T V A AGSGKT ++ R+ L+L P +L +T T A Sbjct: 4 LSRLNPEQLAAVKHTEGPLLVLAGAGSGKTGVITYRIAHLVLDKKVPPDQILAVTFTNKA 63 Query: 75 AAEMSHRV 82 A EM RV Sbjct: 64 AKEMKERV 71 >gi|308804119|ref|XP_003079372.1| ATP-dependent DNA helicase (ISS) [Ostreococcus tauri] gi|116057827|emb|CAL54030.1| ATP-dependent DNA helicase (ISS) [Ostreococcus tauri] Length = 859 Score = 42.4 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 8/74 (10%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A GSGKTH+L+ RV L+ P +LC+T T AA E+ R+ + I Sbjct: 84 PVGATRVLAGPGSGKTHVLIGRVAHLIHEEKTPPREILCITFTNKAAKELRERLRDKI-- 141 Query: 89 WSHLSDEILSAEIT 102 E+ + EIT Sbjct: 142 -----GEVAAKEIT 150 >gi|255535683|ref|YP_003096054.1| ATP-dependent DNA helicase UvrD/PcrA [Flavobacteriaceae bacterium 3519-10] gi|255341879|gb|ACU07992.1| ATP-dependent DNA helicase UvrD/PcrA [Flavobacteriaceae bacterium 3519-10] Length = 775 Score = 42.4 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ P +L LT T AA EM R+ +++ Sbjct: 24 VLAGAGSGKTRVLTMRIAHLITNLVDPFNILALTFTNKAAKEMKERIAKVV 74 >gi|149004237|ref|ZP_01829024.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS69] gi|147757787|gb|EDK64800.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS69] Length = 1421 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L L S L T T AA E+ R+ + I+ +D+ Sbjct: 250 VSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 309 Query: 96 I 96 + Sbjct: 310 V 310 >gi|221068754|ref|ZP_03544859.1| UvrD/REP helicase [Comamonas testosteroni KF-1] gi|220713777|gb|EED69145.1| UvrD/REP helicase [Comamonas testosteroni KF-1] Length = 827 Score = 42.4 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ EQL A + P A + A AGSGKT +L R+ LL A P +++ +T T Sbjct: 26 LLTGLNDEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQTGQATPGSIMAVTFTNK 85 Query: 74 AAAEMSHRV 82 AA EM R+ Sbjct: 86 AAKEMLTRL 94 >gi|91223408|ref|ZP_01258673.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio alginolyticus 12G01] gi|91191494|gb|EAS77758.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio alginolyticus 12G01] Length = 1227 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 23/133 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT + LRLLL + T +L +T T+AA AE+ R+ Sbjct: 38 IEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRAR 97 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 I A SD ++ + + D +A +L+ V TIH F Sbjct: 98 IHDARIAFARGQSSDPVIQPLLNEF-------DDHKQAAEILLQAERQMDEAAVYTIHGF 150 Query: 140 CEAIMQQFPLEAN 152 C+ ++ Q E+ Sbjct: 151 CQRMLTQNAFESG 163 >gi|306820669|ref|ZP_07454297.1| ATP-dependent DNA helicase PcrA [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551279|gb|EFM39242.1| ATP-dependent DNA helicase PcrA [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 729 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT ++ ++ L+ N +P +L +T T AA EM RV E+I Sbjct: 29 AGAGSGKTRVITNKIAYLIEEKNVNPYNILAITFTNKAAKEMLSRVEEMI 78 >gi|328474312|gb|EGF45117.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio parahaemolyticus 10329] Length = 1227 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 23/133 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT + LRLLL + T +L +T T+AA AE+ R+ Sbjct: 38 IEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRAR 97 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 I A SD ++ + + D +A +L+ V TIH F Sbjct: 98 IHDARIAFARGRSSDPVIQPLLNEF-------DDHKQAAEVLLQAERQMDEAAVYTIHGF 150 Query: 140 CEAIMQQFPLEAN 152 C+ ++ Q E+ Sbjct: 151 CQRMLTQNAFESG 163 >gi|306843240|ref|ZP_07475850.1| DNA helicase II [Brucella sp. BO2] gi|306286563|gb|EFM58142.1| DNA helicase II [Brucella sp. BO2] Length = 863 Score = 42.4 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 Q+H E D + EQ A T V A AG+GKT +L R+ +L A+PS + Sbjct: 37 QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95 Query: 66 LCLTHTKAAAAEMSHRVLEII 86 L +T T AA EM R+ ++ Sbjct: 96 LAVTFTNKAAREMKERIGHLV 116 >gi|225627865|ref|ZP_03785902.1| DNA helicase II [Brucella ceti str. Cudo] gi|254710455|ref|ZP_05172266.1| ATP-dependent DNA helicase pcrA [Brucella pinnipedialis B2/94] gi|254714448|ref|ZP_05176259.1| ATP-dependent DNA helicase pcrA [Brucella ceti M644/93/1] gi|254717346|ref|ZP_05179157.1| ATP-dependent DNA helicase pcrA [Brucella ceti M13/05/1] gi|256031949|ref|ZP_05445563.1| ATP-dependent DNA helicase pcrA [Brucella pinnipedialis M292/94/1] gi|256061471|ref|ZP_05451615.1| ATP-dependent DNA helicase pcrA [Brucella neotomae 5K33] gi|256160148|ref|ZP_05457842.1| ATP-dependent DNA helicase pcrA [Brucella ceti M490/95/1] gi|256255354|ref|ZP_05460890.1| ATP-dependent DNA helicase pcrA [Brucella ceti B1/94] gi|260169086|ref|ZP_05755897.1| ATP-dependent DNA helicase pcrA [Brucella sp. F5/99] gi|261219176|ref|ZP_05933457.1| UvrD/REP helicase [Brucella ceti M13/05/1] gi|261222555|ref|ZP_05936836.1| UvrD/REP helicase [Brucella ceti B1/94] gi|261318026|ref|ZP_05957223.1| UvrD/REP helicase [Brucella pinnipedialis B2/94] gi|261322237|ref|ZP_05961434.1| UvrD/REP helicase [Brucella ceti M644/93/1] gi|261325477|ref|ZP_05964674.1| UvrD/REP helicase [Brucella neotomae 5K33] gi|261758591|ref|ZP_06002300.1| UvrD/REP helicase [Brucella sp. F5/99] gi|265989057|ref|ZP_06101614.1| UvrD/REP helicase [Brucella pinnipedialis M292/94/1] gi|265998520|ref|ZP_06111077.1| UvrD/REP helicase [Brucella ceti M490/95/1] gi|294852740|ref|ZP_06793413.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella sp. NVSL 07-0026] gi|225617870|gb|EEH14915.1| DNA helicase II [Brucella ceti str. Cudo] gi|260921139|gb|EEX87792.1| UvrD/REP helicase [Brucella ceti B1/94] gi|260924265|gb|EEX90833.1| UvrD/REP helicase [Brucella ceti M13/05/1] gi|261294927|gb|EEX98423.1| UvrD/REP helicase [Brucella ceti M644/93/1] gi|261297249|gb|EEY00746.1| UvrD/REP helicase [Brucella pinnipedialis B2/94] gi|261301457|gb|EEY04954.1| UvrD/REP helicase [Brucella neotomae 5K33] gi|261738575|gb|EEY26571.1| UvrD/REP helicase [Brucella sp. F5/99] gi|262553144|gb|EEZ08978.1| UvrD/REP helicase [Brucella ceti M490/95/1] gi|264661254|gb|EEZ31515.1| UvrD/REP helicase [Brucella pinnipedialis M292/94/1] gi|294821329|gb|EFG38328.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella sp. NVSL 07-0026] Length = 858 Score = 42.4 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 Q+H E D + EQ A T V A AG+GKT +L R+ +L A+PS + Sbjct: 37 QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95 Query: 66 LCLTHTKAAAAEMSHRVLEII 86 L +T T AA EM R+ ++ Sbjct: 96 LAVTFTNKAAREMKERIGHLV 116 >gi|157163928|ref|YP_001466843.1| putative site-specific DNA methyltransferase [Campylobacter concisus 13826] gi|112801282|gb|EAT98626.1| UvrD/REP helicase [Campylobacter concisus 13826] Length = 677 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 33/63 (52%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 K + A+ P + A+AG+GKT +V R+ LL P +L LT T AA+EM Sbjct: 7 NKEQYTAATAPFGHNLIIASAGTGKTSTIVARIAHLLNLGVAPEKILLLTFTNKAASEMI 66 Query: 80 HRV 82 R+ Sbjct: 67 ERL 69 >gi|312891088|ref|ZP_07750611.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603] gi|311296396|gb|EFQ73542.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603] Length = 1053 Score = 42.4 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 8/86 (9%) Query: 3 YHNSFQEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLL-ANA 60 Y+ FQE ++ +QL A + V A G+GKT IL R+ ++L +A Sbjct: 8 YNAKFQE------ALNNLNPQQLAAVNKMDGPVLVIAGPGTGKTQILAARIGKILTETDA 61 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEII 86 P +LCLT+T A A M R+ + I Sbjct: 62 LPHEILCLTYTDAGAVAMRKRLFDFI 87 >gi|291295604|ref|YP_003507002.1| UvrD/REP helicase [Meiothermus ruber DSM 1279] gi|290470563|gb|ADD27982.1| UvrD/REP helicase [Meiothermus ruber DSM 1279] Length = 706 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A V A AGSGKT +V R+ LL +P+ +L +T T AA EM R+ +++ Sbjct: 22 PALVVAGAGSGKTRTVVHRIAYLLRERRVYPAEILAVTFTNKAAGEMKERLEKMV 76 >gi|281358424|ref|ZP_06244905.1| UvrD/REP helicase [Victivallis vadensis ATCC BAA-548] gi|281315047|gb|EFA99079.1| UvrD/REP helicase [Victivallis vadensis ATCC BAA-548] Length = 679 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 38/162 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 E +++ Q EQ A+ V A AG+GKT ++ R+ +L P +L +T Sbjct: 2 EKDEILKQLNPEQASAAGTVNGPVLVLAGAGTGKTRVITFRIAYMLACGIPPQMILGMTF 61 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ +++ ++ ++T Sbjct: 62 TNKAAREMRERLAQLVQPQ-------IARKVT---------------------------- 86 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 + T H+FC I+++ + F IADE + ++++A Sbjct: 87 --LGTFHSFCIKILRRDIAKLGYLPSFTIADESDQQGVLKQA 126 >gi|23502284|ref|NP_698411.1| DNA helicase II [Brucella suis 1330] gi|161619361|ref|YP_001593248.1| ATP-dependent DNA helicase pcrA [Brucella canis ATCC 23365] gi|254704671|ref|ZP_05166499.1| ATP-dependent DNA helicase pcrA [Brucella suis bv. 3 str. 686] gi|260566081|ref|ZP_05836551.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40] gi|261755364|ref|ZP_05999073.1| UvrD/REP helicase [Brucella suis bv. 3 str. 686] gi|23348259|gb|AAN30326.1| DNA helicase II [Brucella suis 1330] gi|161336172|gb|ABX62477.1| ATP-dependent DNA helicase pcrA [Brucella canis ATCC 23365] gi|260155599|gb|EEW90679.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40] gi|261745117|gb|EEY33043.1| UvrD/REP helicase [Brucella suis bv. 3 str. 686] Length = 858 Score = 42.4 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 Q+H E D + EQ A T V A AG+GKT +L R+ +L A+PS + Sbjct: 37 QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95 Query: 66 LCLTHTKAAAAEMSHRVLEII 86 L +T T AA EM R+ ++ Sbjct: 96 LAVTFTNKAAREMKERIGHLV 116 >gi|296169707|ref|ZP_06851325.1| ATP-dependent helicase PcrA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895704|gb|EFG75400.1| ATP-dependent helicase PcrA [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 777 Score = 42.4 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 40/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ L+ A +L +T T AAAEM RV+ ++ Sbjct: 38 IVAGAGSGKTAVLTRRIAYLIAARGVGVGQILAITFTNKAAAEMRERVVRLVG------- 90 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 ++AR + V T H+ C I++ Q L + Sbjct: 91 --------------------NRAR-----------AMWVSTFHSTCVRILRNQAALIEGL 119 Query: 154 TSHFAIADEEQSKKLIE 170 S+F+I D + S++L++ Sbjct: 120 NSNFSIYDADDSRRLLQ 136 >gi|254719445|ref|ZP_05181256.1| ATP-dependent DNA helicase pcrA [Brucella sp. 83/13] gi|265984450|ref|ZP_06097185.1| UvrD/REP helicase [Brucella sp. 83/13] gi|306839222|ref|ZP_07472039.1| DNA helicase II [Brucella sp. NF 2653] gi|264663042|gb|EEZ33303.1| UvrD/REP helicase [Brucella sp. 83/13] gi|306405769|gb|EFM62031.1| DNA helicase II [Brucella sp. NF 2653] Length = 858 Score = 42.4 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 Q+H E D + EQ A T V A AG+GKT +L R+ +L A+PS + Sbjct: 37 QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95 Query: 66 LCLTHTKAAAAEMSHRVLEII 86 L +T T AA EM R+ ++ Sbjct: 96 LAVTFTNKAAREMKERIGHLV 116 >gi|254689608|ref|ZP_05152862.1| DNA helicase II [Brucella abortus bv. 6 str. 870] gi|254694098|ref|ZP_05155926.1| DNA helicase II [Brucella abortus bv. 3 str. Tulya] gi|256257857|ref|ZP_05463393.1| DNA helicase II [Brucella abortus bv. 9 str. C68] gi|260755135|ref|ZP_05867483.1| UvrD/REP helicase [Brucella abortus bv. 6 str. 870] gi|260884147|ref|ZP_05895761.1| UvrD/REP helicase [Brucella abortus bv. 9 str. C68] gi|261214396|ref|ZP_05928677.1| UvrD/REP helicase [Brucella abortus bv. 3 str. Tulya] gi|297248693|ref|ZP_06932411.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella abortus bv. 5 str. B3196] gi|260675243|gb|EEX62064.1| UvrD/REP helicase [Brucella abortus bv. 6 str. 870] gi|260873675|gb|EEX80744.1| UvrD/REP helicase [Brucella abortus bv. 9 str. C68] gi|260916003|gb|EEX82864.1| UvrD/REP helicase [Brucella abortus bv. 3 str. Tulya] gi|297175862|gb|EFH35209.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella abortus bv. 5 str. B3196] Length = 858 Score = 42.4 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 Q+H E D + EQ A T V A AG+GKT +L R+ +L A+PS + Sbjct: 37 QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95 Query: 66 LCLTHTKAAAAEMSHRVLEII 86 L +T T AA EM R+ ++ Sbjct: 96 LAVTFTNKAAREMKERIGHLV 116 >gi|163843668|ref|YP_001628072.1| ATP-dependent DNA helicase pcrA [Brucella suis ATCC 23445] gi|163674391|gb|ABY38502.1| ATP-dependent DNA helicase pcrA [Brucella suis ATCC 23445] Length = 858 Score = 42.4 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 Q+H E D + EQ A T V A AG+GKT +L R+ +L A+PS + Sbjct: 37 QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95 Query: 66 LCLTHTKAAAAEMSHRVLEII 86 L +T T AA EM R+ ++ Sbjct: 96 LAVTFTNKAAREMKERIGHLV 116 >gi|149376496|ref|ZP_01894257.1| DNA-dependent helicase II [Marinobacter algicola DG893] gi|149359163|gb|EDM47626.1| DNA-dependent helicase II [Marinobacter algicola DG893] Length = 721 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 3/77 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLT 69 S ID ++ + E + A + V A AGSGKT +LV R+ L+ + P T +L +T Sbjct: 4 SHIIDALNDAQREAVTAQND--HLLVLAGAGSGKTRVLVHRIAWLMQVDKVPPTGILAVT 61 Query: 70 HTKAAAAEMSHRVLEII 86 T AA EM +R+ +++ Sbjct: 62 FTNKAAKEMRYRIEQMM 78 >gi|148558984|ref|YP_001259307.1| DNA helicase II [Brucella ovis ATCC 25840] gi|148370241|gb|ABQ60220.1| DNA helicase II [Brucella ovis ATCC 25840] Length = 858 Score = 42.4 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 Q+H E D + EQ A T V A AG+GKT +L R+ +L A+PS + Sbjct: 37 QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95 Query: 66 LCLTHTKAAAAEMSHRVLEII 86 L +T T AA EM R+ ++ Sbjct: 96 LAVTFTNKAAREMKERIGHLV 116 >gi|82701697|ref|YP_411263.1| UvrD/REP helicase [Nitrosospira multiformis ATCC 25196] gi|82409762|gb|ABB73871.1| ATP-dependent DNA helicase UvrD [Nitrosospira multiformis ATCC 25196] Length = 743 Score = 42.4 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 L++ EQL A + P +SA V A AGSGKT +L R+ L+ + P +L +T T Sbjct: 4 LLTALNPEQLEAVTLPHQSALVLAGAGSGKTKVLTTRIAYLIQSGEVSPHGILAVTFTNK 63 Query: 74 AAAEMSHRVLEII 86 AA EM R+ ++ Sbjct: 64 AAKEMLTRIAAML 76 >gi|62290306|ref|YP_222099.1| DNA helicase II [Brucella abortus bv. 1 str. 9-941] gi|82700230|ref|YP_414804.1| UvrD/REP helicase [Brucella melitensis biovar Abortus 2308] gi|189024540|ref|YP_001935308.1| UvrD/REP helicase [Brucella abortus S19] gi|237815813|ref|ZP_04594810.1| DNA helicase II [Brucella abortus str. 2308 A] gi|254730639|ref|ZP_05189217.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292] gi|260546849|ref|ZP_05822588.1| UvrD/REP helicase [Brucella abortus NCTC 8038] gi|260758354|ref|ZP_05870702.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292] gi|62196438|gb|AAX74738.1| DNA helicase II [Brucella abortus bv. 1 str. 9-941] gi|82616331|emb|CAJ11388.1| UvrD/REP helicase:ATP/GTP-binding site motif A (P-loop) [Brucella melitensis biovar Abortus 2308] gi|189020112|gb|ACD72834.1| UvrD/REP helicase [Brucella abortus S19] gi|237789111|gb|EEP63322.1| DNA helicase II [Brucella abortus str. 2308 A] gi|260095899|gb|EEW79776.1| UvrD/REP helicase [Brucella abortus NCTC 8038] gi|260668672|gb|EEX55612.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292] Length = 858 Score = 42.4 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 Q+H E D + EQ A T V A AG+GKT +L R+ +L A+PS + Sbjct: 37 QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95 Query: 66 LCLTHTKAAAAEMSHRVLEII 86 L +T T AA EM R+ ++ Sbjct: 96 LAVTFTNKAAREMKERIGHLV 116 >gi|33861659|ref|NP_893220.1| UvrD/REP helicase subunit B [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33640027|emb|CAE19562.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 1209 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 6/121 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GK+ L VLR +L S +L L+ TK E+ ++L Sbjct: 15 IEASAGTGKSFTLAHLVLRNVLEKKIKSEEILLLSFTKNTCTELRDKILSRFCKLKLFLQ 74 Query: 95 EILSAEI--TKIQGKKPNKSDMSKARHLLITI---LETPGGLKVQTIHAFCEAIMQQFPL 149 E+ T ++ K + + + + ++ I + T LKV T HAFC I+++F + Sbjct: 75 NPEETELDNTLLEWYKNFQKEETNPKKIIFDIDNFINTIYKLKVTTFHAFCNNILEEFSI 134 Query: 150 E 150 + Sbjct: 135 D 135 >gi|134300187|ref|YP_001113683.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum reducens MI-1] gi|134052887|gb|ABO50858.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum reducens MI-1] Length = 730 Score = 42.4 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 14 IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ++++SQ Q A T V A AGSGKT +L R+ ++L P +L +T T Sbjct: 1 MNILSQLNPAQEEAVQHTEGPLLVLAGAGSGKTRVLTHRIAQILSQGVRPYNILAITFTN 60 Query: 73 AAAAEMSHRVLEII 86 AA EM RV ++ Sbjct: 61 KAANEMRARVENLV 74 >gi|317012720|gb|ADU83328.1| Rep helicase [Helicobacter pylori Lithuania75] Length = 675 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ ++ V A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKAALASKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65 Query: 78 MSHRVLEIITAWSHL 92 M RV + + S + Sbjct: 66 MIARVAKYFKSSSKI 80 >gi|264677052|ref|YP_003276958.1| UvrD/REP helicase [Comamonas testosteroni CNB-2] gi|262207564|gb|ACY31662.1| UvrD/REP helicase [Comamonas testosteroni CNB-2] Length = 827 Score = 42.4 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ EQL A + P A + A AGSGKT +L R+ LL A P +++ +T T Sbjct: 26 LLTGLNDEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQTGQATPGSIMAVTFTNK 85 Query: 74 AAAEMSHRV 82 AA EM R+ Sbjct: 86 AAKEMLTRL 94 >gi|163753956|ref|ZP_02161079.1| UvrD/REP helicase [Kordia algicida OT-1] gi|161326170|gb|EDP97496.1| UvrD/REP helicase [Kordia algicida OT-1] Length = 969 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Query: 16 LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 + S+ Q LA D T + A G+GKT LV+R + L+ P +L T T+ A Sbjct: 1 MTSRNNPYQQLAIDTTEGPVLIIAGPGAGKTRTLVERTVNLIQKGTKPEEILVATFTEKA 60 Query: 75 AAEM----SHRVLEI 85 A E+ S+R+LE+ Sbjct: 61 AKELVTRISNRLLEL 75 >gi|86739360|ref|YP_479760.1| ATP-dependent DNA helicase PcrA [Frankia sp. CcI3] gi|86566222|gb|ABD10031.1| ATP-dependent DNA helicase PcrA [Frankia sp. CcI3] Length = 838 Score = 42.4 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ LL A P +L +T T AA EM RV ++ Sbjct: 82 VVAGAGSGKTRVLTHRIAYLLAARGVRPGEMLAITFTNKAANEMRERVSALV 133 >gi|41406991|ref|NP_959827.1| hypothetical protein MAP0893 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395342|gb|AAS03210.1| UvrD [Mycobacterium avium subsp. paratuberculosis K-10] Length = 774 Score = 42.4 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 40/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +RV L+ A +L +T T AAAEM RV+ ++ Sbjct: 38 IVAGAGSGKTAVLTRRVAYLIAARGVGVGQVLAITFTNKAAAEMRERVVRLVG------- 90 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 ++AR + V T H+ C I++ Q L + Sbjct: 91 --------------------NRAR-----------AMWVSTFHSTCVRILRNQASLIEGL 119 Query: 154 TSHFAIADEEQSKKLIE 170 S+F+I D + S++L++ Sbjct: 120 NSNFSIYDADDSRRLLQ 136 >gi|87121050|ref|ZP_01076941.1| DNA helicase II [Marinomonas sp. MED121] gi|86163542|gb|EAQ64816.1| DNA helicase II [Marinomonas sp. MED121] Length = 735 Score = 42.4 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 3/74 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +D ++ + E + A P ++ + A AGSGKT +LV R+ L+ A P +++ +T T Sbjct: 7 LDSLNDKQREAVAA--PLQNTLILAGAGSGKTRVLVHRIAWLMHAYEVSPFSIMAVTFTN 64 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +++ Sbjct: 65 KAAKEMQARIEQLV 78 >gi|329767008|ref|ZP_08258536.1| hypothetical protein HMPREF0428_00233 [Gemella haemolysans M341] gi|328837733|gb|EGF87358.1| hypothetical protein HMPREF0428_00233 [Gemella haemolysans M341] Length = 728 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 2/79 (2%) Query: 14 IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71 ++ + QL A T A V A AGSGKT +L R+ L+ N S +L +T T Sbjct: 1 MNFVQNMNDNQLKAILKTDGAVMVIAGAGSGKTRVLTNRIAYLIAEKNVLESNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWS 90 AA EM R+ ++ S Sbjct: 61 NKAAKEMKERIYALVGETS 79 >gi|254516482|ref|ZP_05128541.1| putative UvrD/REP helicase [gamma proteobacterium NOR5-3] gi|219674905|gb|EED31272.1| putative UvrD/REP helicase [gamma proteobacterium NOR5-3] Length = 1055 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 31/146 (21%) Query: 35 WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 ++SA AGSGKT+ L Q++ +LL + P+ ++ T TK AA E+ RV + Sbjct: 11 FISAGAGSGKTYSLTQKLEQLLSSQEVSPAGVIATTFTKLAAGELKERVRSKLIE----- 65 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 G+ + M +A + T++ C ++++F EA++ Sbjct: 66 -----------SGQLGVANQMEQAL--------------IGTVNGVCGDLLRRFAFEAHM 100 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLAS 179 + DE Q L +A + LA+ Sbjct: 101 PPDQLVLDEAQGDLLFYQAIEHALAT 126 >gi|91203329|emb|CAJ72968.1| strongly similar to ATP-dependent DNA helicase [Candidatus Kuenenia stuttgartiensis] Length = 729 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT ++ +R+ L+ P +L +T T AA EM+ RV Sbjct: 24 IVAGAGSGKTRVITRRIGYLMSEGISPYNILAITFTNKAANEMAERV 70 >gi|113477645|ref|YP_723706.1| ATP-dependent DNA helicase Rep [Trichodesmium erythraeum IMS101] gi|110168693|gb|ABG53233.1| ATP-dependent DNA helicase, Rep family [Trichodesmium erythraeum IMS101] Length = 781 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 20/145 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L RV+ L+ + HP +L +T T AA EM R+ + Sbjct: 27 VVAGAGSGKTRALTYRVVHLIRHHRVHPENILAVTFTNKAAQEMKDRI-----------E 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITIL--ETPGGLKVQTIHAFCEAIMQ------Q 146 ++ + E + + KP + S+ + L + + L V T H C I++ Q Sbjct: 76 KVFAQEQAEAKYNKPFSALTSEEQIRLRSQVYKNITKHLWVGTFHNLCARILRFDINKYQ 135 Query: 147 FPLEANITSHFAIADEEQSKKLIEE 171 + + +F+I DE ++ LI++ Sbjct: 136 DEKKRHWDKNFSIFDESDAQSLIKQ 160 >gi|332184470|gb|AEE26724.1| Exodeoxyribonuclease V beta chain [Francisella cf. novicida 3523] Length = 1197 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 16/119 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT + + +RLL+ P+ +L +T TK A E+ R VLE I+ Sbjct: 17 IEASAGTGKTFNITELYIRLLVEKKLLPNQILVMTFTKDATQEIIGRVEAKIRDVLEDIS 76 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + I E T IQ N +HL ++LE + TIH FC+ ++ + Sbjct: 77 EGKEVKVSIKGQE-TLIQKGDEN------YKHLKRSLLEIDEAA-IFTIHGFCKKVLSE 127 >gi|330995679|ref|ZP_08319577.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841] gi|329574738|gb|EGG56299.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841] Length = 1082 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 9/131 (6%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITA-WSHLS 93 A+AGSGKT L + ++ L+ S +L +T T A EM R+L+ + W L Sbjct: 10 ASAGSGKTFTLAIQYIKTLIEQESRHAYSHILAVTFTNKATTEMKDRILQQLYGIWKGLP 69 Query: 94 D-----EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 E L E+ + P + S+A L IL +V+TI +F +++++ Sbjct: 70 SSTNYLESLQKELRADSIELPEEEIRSRAGAALCHILHDYNRFRVETIDSFFQSVLKNLA 129 Query: 149 LEANITSHFAI 159 E ++T++ + Sbjct: 130 HELSLTANLKV 140 >gi|330815075|ref|YP_004358780.1| UvrD/REP helicase [Burkholderia gladioli BSR3] gi|327367468|gb|AEA58824.1| UvrD/REP helicase [Burkholderia gladioli BSR3] Length = 694 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIENKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +++E +T Sbjct: 117 PQFSIMDSDDCFGMVQEQMGTT 138 >gi|331694962|ref|YP_004331201.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190] gi|326949651|gb|AEA23348.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190] Length = 1224 Score = 42.4 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78 T+ + + + P+R A V A AG+GKT + RV+ L+ P +L LT T+ AA ++ Sbjct: 18 TEEQAAVIAAPSRPALVVAGAGAGKTETMAARVVWLVATGQVLPEQVLGLTFTRKAAQQL 77 Query: 79 SHRV 82 RV Sbjct: 78 GQRV 81 >gi|317178737|dbj|BAJ56525.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter pylori F30] Length = 676 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ + V A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65 Query: 78 MSHRV 82 M RV Sbjct: 66 MIARV 70 >gi|308184696|ref|YP_003928829.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Helicobacter pylori SJM180] gi|308060616|gb|ADO02512.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Helicobacter pylori SJM180] Length = 675 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 5/79 (6%) Query: 19 QTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ + + A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKAAKALQGHNLIIASAGTGKTSTIVGRILHLLDNGIKPEEILLLTFTNKASNE 65 Query: 78 MSHRVLEIITAWSHLSDEI 96 M RV +S LS +I Sbjct: 66 MIARV----AKYSKLSSKI 80 >gi|254697750|ref|ZP_05159578.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59] gi|260762180|ref|ZP_05874523.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59] gi|260672612|gb|EEX59433.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59] Length = 853 Score = 42.4 bits (98), Expect = 0.061, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 Q+H E D + EQ A T V A AG+GKT +L R+ +L A+PS + Sbjct: 37 QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95 Query: 66 LCLTHTKAAAAEMSHRVLEII 86 L +T T AA EM R+ ++ Sbjct: 96 LAVTFTNKAAREMKERIGHLV 116 >gi|251792613|ref|YP_003007339.1| exodeoxyribonuclease V subunit beta [Aggregatibacter aphrophilus NJ8700] gi|247534006|gb|ACS97252.1| exodeoxyribonuclease V, beta subunit [Aggregatibacter aphrophilus NJ8700] Length = 1220 Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 15/143 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLA---NAHPSTL-----LCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT+ + LRLLL NA P L L +T T+ A E+ ++ E I Sbjct: 17 IEASAGTGKTYTMGSLYLRLLLQAGKNAFPYALNVEQILVVTFTEMATEELKKKIRERIY 76 Query: 88 -------AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 + D + ++G +D+ A L + + TIH FC Sbjct: 77 DAKQKVIVYQQTRDLCAFEQDDFLRGLAETITDLPLAIQRLTLAEQNMDLAAIYTIHGFC 136 Query: 141 EAIMQQFPLEANITSHFAIADEE 163 ++ Q+ + I + ++ EE Sbjct: 137 RRMLVQYAFNSGIHFNLELSGEE 159 >gi|163868698|ref|YP_001609910.1| DNA helicase II [Bartonella tribocorum CIP 105476] gi|161018357|emb|CAK01915.1| DNA helicase II [Bartonella tribocorum CIP 105476] Length = 787 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 2/81 (2%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 ++ S D + Q EQ A T V A AG+GKT +L R+ +L + A P + Sbjct: 42 EKKSYNTDYLGQLNPEQQQAVINTEGPLLVLAGAGTGKTRVLTTRISHILRSGLASPQQI 101 Query: 66 LCLTHTKAAAAEMSHRVLEII 86 L +T T AA EM R+ E+I Sbjct: 102 LAVTFTNKAAREMKIRIGELI 122 >gi|85859318|ref|YP_461520.1| uvrD/rep helicase [Syntrophus aciditrophicus SB] gi|85722409|gb|ABC77352.1| uvrD/rep helicase [Syntrophus aciditrophicus SB] Length = 657 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT L RV RL+ P +L T T AA M +RV E++ Sbjct: 25 VLAGAGSGKTRTLTYRVARLVETGIKPERILLATFTNKAARSMLNRVRELV 75 >gi|317498206|ref|ZP_07956507.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA] gi|316894561|gb|EFV16742.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA] Length = 655 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 L+ Q QL A T V A AGSGKT L R L+ P +LC+T T Sbjct: 32 LLCQLNQAQLEAVTSTEGFIRVIAGAGSGKTRALSHRFAFLVNEIGILPGNILCVTFTNK 91 Query: 74 AAAEMSHRVLEII 86 AA EM HR+ +I Sbjct: 92 AANEMRHRIHNLI 104 >gi|265753474|ref|ZP_06088829.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263235188|gb|EEZ20712.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 796 Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 28/48 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 V A AGSGKT +L ++ LL P ++L LT T AA EM R++ Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLEQGYTPWSILALTFTNKAAREMKERIV 72 >gi|258514071|ref|YP_003190293.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum acetoxidans DSM 771] gi|257777776|gb|ACV61670.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum acetoxidans DSM 771] Length = 737 Score = 42.4 bits (98), Expect = 0.062, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ LLL+ P +L +T T AA EM RV I+ Sbjct: 34 ILAGAGSGKTRVLTHRIAHLLLSEKVSPFNILAITFTNKAALEMRERVAAIL 85 >gi|284992801|ref|YP_003411355.1| ATP-dependent DNA helicase PcrA [Geodermatophilus obscurus DSM 43160] gi|284066046|gb|ADB76984.1| ATP-dependent DNA helicase PcrA [Geodermatophilus obscurus DSM 43160] Length = 765 Score = 42.4 bits (98), Expect = 0.062, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 10/79 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI--------- 85 + A AGSGKT +L R+ LL A P +L +T T AA EM RV + Sbjct: 50 IVAGAGSGKTRVLTHRIAYLLGARGVQPGEVLAITFTNKAAGEMKERVAALVGPRARAMW 109 Query: 86 ITAWSHLSDEILSAEITKI 104 ++ + + IL AE K+ Sbjct: 110 VSTFHSMCVRILRAEAAKL 128 >gi|220906933|ref|YP_002482244.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7425] gi|219863544|gb|ACL43883.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7425] Length = 797 Score = 42.4 bits (98), Expect = 0.063, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 18/144 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+L + P +L +T T AA EM R+ ++ Sbjct: 28 VVAGAGSGKTRALTYRIANLVLTHRIAPENILAVTFTNKAAREMKERIKKLFA-----EQ 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA--- 151 + L I KP + + + + + TI+ L + T H+ C I+ +F +E Sbjct: 83 QALQQYGQSIASLKPFERNRLETQ-VYKTIIRD---LWIGTFHSLCARIL-RFEIEKYRD 137 Query: 152 ----NITSHFAIADEEQSKKLIEE 171 S+F+I DE + LI++ Sbjct: 138 SKGRQWQSNFSIFDESDVQSLIKD 161 >gi|220919102|ref|YP_002494406.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956956|gb|ACL67340.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1] Length = 1111 Score = 42.4 bits (98), Expect = 0.063, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 25/148 (16%) Query: 38 ANAGSGKTHILVQRVL-RLLLANAHPSTLL----CLTHTKAAAAEMSHRVLEIITAWSHL 92 A AG+GKT +LV R++ R+ + P+ L +T T+ AA E+ R+ E L Sbjct: 28 AGAGTGKTTLLVARLVERVAPEDDGPALPLGRIAAVTFTRKAAGELRLRIREA------L 81 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + A++T+++ R L L V TIHAF + +++ P+EA Sbjct: 82 LRALARADLTELR------------RRRLADALSALDTAHVGTIHAFADRLLRLRPVEAR 129 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASI 180 ++ + I +++ L++EA + L ++ Sbjct: 130 LSPSYDIVEDDAP--LVDEAFAAFLHAV 155 >gi|153062|gb|AAA72091.1| helicase [Staphylococcus aureus] gi|742312|prf||2009360A helicase Length = 675 Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ +EQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 74 AAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 64 AAREMKERVQKLV 76 >gi|187935645|ref|YP_001884643.1| helicase, UvrD/Rep family [Clostridium botulinum B str. Eklund 17B] gi|187723798|gb|ACD25019.1| helicase, UvrD/Rep family [Clostridium botulinum B str. Eklund 17B] Length = 750 Score = 42.0 bits (97), Expect = 0.064, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 55/138 (39%), Gaps = 39/138 (28%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT +L R+ ++ P +L +T T AA EM RV+ +I Sbjct: 26 AGAGSGKTRVLTYRMAHMIENIGIAPYNILAITFTNKAAKEMKDRVISLIG--------- 76 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 SKA ++ I+ T H+ C I+++ + S+ Sbjct: 77 ------------------SKAENMWIS-----------TFHSTCVRILRREIDKIGYNSN 107 Query: 157 FAIADEEQSKKLIEEAKK 174 F I D K LI+E K Sbjct: 108 FTIYDTSDQKVLIKECMK 125 >gi|186477746|ref|YP_001859216.1| UvrD/REP helicase [Burkholderia phymatum STM815] gi|184194205|gb|ACC72170.1| UvrD/REP helicase [Burkholderia phymatum STM815] Length = 731 Score = 42.0 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ P + +T T AAAEM RV Sbjct: 58 VLAGAGSGKTRVITQKIAHLIENKGFEPRHIAAVTFTNKAAAEMRERV-----------G 106 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 107 KLLEGKTLTAPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 152 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +I+E ST Sbjct: 153 PQFSIMDSDDCFGMIQEQVGST 174 >gi|152964726|ref|YP_001360510.1| ATP-dependent DNA helicase PcrA [Kineococcus radiotolerans SRS30216] gi|151359243|gb|ABS02246.1| ATP-dependent DNA helicase PcrA [Kineococcus radiotolerans SRS30216] Length = 773 Score = 42.0 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT +L R+ LL A P +L +T T AAAEM RV Sbjct: 54 IVAGAGSGKTRVLTHRIAYLLARGRATPGEVLAITFTNKAAAEMRERV 101 >gi|317009567|gb|ADU80147.1| Rep helicase [Helicobacter pylori India7] Length = 676 Score = 42.0 bits (97), Expect = 0.064, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 19 QTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ + V A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKATKALKGHNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASHE 65 Query: 78 MSHRV 82 M RV Sbjct: 66 MISRV 70 >gi|306844312|ref|ZP_07476904.1| DNA helicase II [Brucella sp. BO1] gi|306275384|gb|EFM57125.1| DNA helicase II [Brucella sp. BO1] Length = 858 Score = 42.0 bits (97), Expect = 0.064, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 Q+H E D + EQ A T V A AG+GKT +L R+ +L A+PS + Sbjct: 37 QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95 Query: 66 LCLTHTKAAAAEMSHRVLEII 86 L +T T AA EM R+ ++ Sbjct: 96 LAVTFTNKAAREMKERIGHLV 116 >gi|208434816|ref|YP_002266482.1| rephelicase, single-stranded DNA-dependent ATPase [Helicobacter pylori G27] gi|208432745|gb|ACI27616.1| rephelicase, single-stranded DNA-dependent ATPase [Helicobacter pylori G27] Length = 675 Score = 42.0 bits (97), Expect = 0.064, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ ++ V A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKAALASKGYNLVIASAGTGKTSTIVGRILHLLDNGIKPEEILLLTFTNKASNE 65 Query: 78 MSHRV 82 M RV Sbjct: 66 MIARV 70 >gi|147678864|ref|YP_001213079.1| superfamily I DNA/RNA helicase [Pelotomaculum thermopropionicum SI] gi|146274961|dbj|BAF60710.1| superfamily I DNA and RNA helicases [Pelotomaculum thermopropionicum SI] Length = 710 Score = 42.0 bits (97), Expect = 0.064, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL+SQ +Q+ A + V A AGSGKT +L RV LL P +L +T T Sbjct: 1 MDLLSQLNPDQVAAVTHGEGPLLVLAGAGSGKTRVLTCRVAYLLKEFKVLPHQILAITFT 60 Query: 72 KAAAAEMSHRVLEII 86 AA EM RV ++ Sbjct: 61 NKAAGEMRERVGALV 75 >gi|309801365|ref|ZP_07695494.1| putative ATP-dependent DNA helicase PcrA [Bifidobacterium dentium JCVIHMP022] gi|308222254|gb|EFO78537.1| putative ATP-dependent DNA helicase PcrA [Bifidobacterium dentium JCVIHMP022] Length = 794 Score = 42.0 bits (97), Expect = 0.065, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ LL S +L +T T AAAEM R+ ++ Sbjct: 36 IGAGAGSGKTRVLTRRIAWLLAHGIWASQILAITFTNKAAAEMRERLAALV 86 >gi|303240431|ref|ZP_07326948.1| ATP-dependent DNA helicase, RecQ family [Acetivibrio cellulolyticus CD2] gi|302591996|gb|EFL61727.1| ATP-dependent DNA helicase, RecQ family [Acetivibrio cellulolyticus CD2] Length = 1602 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 +++ + T+ V+A GSGKT +LV ++ LLL + LL +T ++AA E R+ Sbjct: 1055 KIITDNQTKHIVVAAGPGSGKTRVLVHKLASLLLMEDVKHEQLLMVTFSRAAVTEFKKRL 1114 Query: 83 LEII 86 L++I Sbjct: 1115 LKLI 1118 >gi|258591574|emb|CBE67875.1| DNA helicase II [NC10 bacterium 'Dutch sediment'] Length = 729 Score = 42.0 bits (97), Expect = 0.065, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 56/141 (39%), Gaps = 31/141 (21%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ +R+ L+ P +L +T T AA EM RV Sbjct: 27 VLAGAGSGKTRVITRRIAYLIGHCGVAPWNILAVTFTNKAAGEMKRRV------------ 74 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A++ +P D S G+ V T H+ C I+++ I Sbjct: 75 ----ADLVGQHASEPGLRDGS--------------GVWVGTFHSTCVRILRKHGAALGIK 116 Query: 155 SHFAIADEEQSKKLIEEAKKS 175 S F I DE L+ + ++ Sbjct: 117 SSFVIYDEGDQMSLMRDCLRA 137 >gi|229084316|ref|ZP_04216597.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-44] gi|228698973|gb|EEL51677.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-44] Length = 644 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + + HP +L LT T+ AA E+ RV Sbjct: 27 AGAGSGKTSVLTTRVGYLINVKHVHPRNILLLTFTQKAAEEIRSRV 72 >gi|188579666|ref|YP_001923111.1| UvrD/REP helicase [Methylobacterium populi BJ001] gi|179343164|gb|ACB78576.1| UvrD/REP helicase [Methylobacterium populi BJ001] Length = 798 Score = 42.0 bits (97), Expect = 0.065, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 12 ETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 E +S EQ A + T V A AG+GKT +L R+ L+ A P +L +T Sbjct: 39 EGASYLSGLNPEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIATGKARPYDILSVT 98 Query: 70 HTKAAAAEMSHRV 82 T AA EM HR+ Sbjct: 99 FTNKAAREMKHRI 111 >gi|154492504|ref|ZP_02032130.1| hypothetical protein PARMER_02138 [Parabacteroides merdae ATCC 43184] gi|154087729|gb|EDN86774.1| hypothetical protein PARMER_02138 [Parabacteroides merdae ATCC 43184] Length = 1619 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75 +S+T+ E ++ D S V A GSGKT +LV ++ LLL + LL LT ++AAA Sbjct: 1049 LSETQLE-IVKDDRPGSIVVMAGPGSGKTRVLVHKLAYLLLEEDVKHEQLLMLTFSRAAA 1107 Query: 76 AEMSHRVLEII 86 +E R+ ++I Sbjct: 1108 SEFRRRLWDLI 1118 >gi|82751561|ref|YP_417302.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122] gi|82657092|emb|CAI81529.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122] Length = 730 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ +EQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 74 AAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 64 AAREMKERVQKLV 76 >gi|323439849|gb|EGA97565.1| ATP-dependent DNA helicase [Staphylococcus aureus O11] gi|323443012|gb|EGB00633.1| ATP-dependent DNA helicase [Staphylococcus aureus O46] Length = 730 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ +EQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 74 AAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 64 AAREMKERVQKLV 76 >gi|289522440|ref|ZP_06439294.1| ATP-dependent helicase PcrA [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504276|gb|EFD25440.1| ATP-dependent helicase PcrA [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 662 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 65/168 (38%), Gaps = 43/168 (25%) Query: 12 ETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 +T L+SQ Q A T+ V A AGSGKT +L + L+ + A P +L +T Sbjct: 2 QTEQLLSQLNPRQREAVLYTKGPLLVLAGAGSGKTRVLTYKFAYLVASGLAQPWQILAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV W+ L +I Sbjct: 62 FTNKAAREMKERV------WALLGSDI--------------------------------N 83 Query: 130 GLKVQTIHAFCEAIMQQFP---LEANITSHFAIADEEQSKKLIEEAKK 174 L + T H++ + ++ EA I F++ D S+KL+E K Sbjct: 84 NLHISTFHSYGVEFLYRYTKEVGEAGIRVPFSVFDRGDSQKLVERLMK 131 >gi|221633115|ref|YP_002522340.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159] gi|221156880|gb|ACM06007.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159] Length = 534 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 10/111 (9%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 QT++ +L S R A V A+ G+GKT +L+ L+ H L LT T+ E+ Sbjct: 39 QTEAIPVLLSG--RDAIVQAHTGTGKTAAFALPILQGLVPYGHGPQALVLTPTR----EL 92 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 + +V E I H L A + + G +P + + RH + I+ TPG Sbjct: 93 AIQVAEAI----HRLGRYLDARVLALYGGQPIERQLRALRHPVDVIVGTPG 139 >gi|218132415|ref|ZP_03461219.1| hypothetical protein BACPEC_00274 [Bacteroides pectinophilus ATCC 43243] gi|217992753|gb|EEC58755.1| hypothetical protein BACPEC_00274 [Bacteroides pectinophilus ATCC 43243] Length = 766 Score = 42.0 bits (97), Expect = 0.065, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ L+ +P +L +T T AA+EM RV ++++ Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIEEQGVNPWNILAITFTNKAASEMRERVDKVVSM------ 77 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A H+ ++ T H+ C I++++ Sbjct: 78 ---------------------GAEHVWVS-----------TFHSMCVRILRRYIDRIGYD 105 Query: 155 SHFAIADEEQSKKLIEEAKK 174 ++F I D + K ++ EA K Sbjct: 106 TNFTIYDSDDQKSIVREAIK 125 >gi|217034405|ref|ZP_03439819.1| hypothetical protein HP9810_884g10 [Helicobacter pylori 98-10] gi|216943136|gb|EEC22608.1| hypothetical protein HP9810_884g10 [Helicobacter pylori 98-10] Length = 675 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ + V A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65 Query: 78 MSHRV 82 M RV Sbjct: 66 MIARV 70 >gi|240047396|ref|YP_002960784.1| ATP-dependent helicase PcrA [Mycoplasma conjunctivae HRC/581] gi|239984968|emb|CAT04961.1| ATP-dependent helicase PcrA [Mycoplasma conjunctivae] Length = 737 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AG+GKT +L +++ +++ A+P+ +L LT T AA EM R+ +I Sbjct: 18 IVAGAGTGKTSVLTKKIAYIVIEKKAYPNQILALTFTNKAAIEMKERLQSLI 69 >gi|305667011|ref|YP_003863298.1| putative helicase [Maribacter sp. HTCC2170] gi|88709246|gb|EAR01480.1| putative helicase [Maribacter sp. HTCC2170] Length = 787 Score = 42.0 bits (97), Expect = 0.066, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ +L LT T AA EM R+ EI+ Sbjct: 36 VIAGAGSGKTRVLTYRIAHLMAQGVDSFNILALTFTNKAAREMKKRIAEIV 86 >gi|261838287|gb|ACX98053.1| ATP-dependent single-stranded DNA helicase [Helicobacter pylori 51] Length = 676 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ + V A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65 Query: 78 MSHRV 82 M RV Sbjct: 66 MIARV 70 >gi|78484557|ref|YP_390482.1| UvrD/REP helicase [Thiomicrospira crunogena XCL-2] gi|78362843|gb|ABB40808.1| ATP-dependent DNA helicase Rep [Thiomicrospira crunogena XCL-2] Length = 677 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 39/153 (25%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A V A AGSGKT ++ +++ L+ + P + LT T AA EM RV +++ Sbjct: 19 ALVLAGAGSGKTRVITEKIAYLIRKHDVQPHHIYALTFTNKAAKEMKERVSKLL------ 72 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 K D SK GL V T H I++Q Sbjct: 73 ------------------KDDPSK-------------GLNVSTFHNLGLNIIRQEYHALG 101 Query: 153 ITSHFAIADEEQSKKLIEE-AKKSTLASIMLDN 184 S F+I D +K++++E KK L+ LD Sbjct: 102 YKSTFSIMDATDTKQILKELMKKQQLSEEELDG 134 >gi|56962858|ref|YP_174585.1| ATP-dependent DNA helicase UvrD [Bacillus clausii KSM-K16] gi|56909097|dbj|BAD63624.1| UvrD/REP family ATP-dependent DNA helicase [Bacillus clausii KSM-K16] Length = 751 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ LL ++ P +L LT T AA EM RV +++ Sbjct: 35 AGAGSGKTRVLTYRISYLLRRHSTPPWAVLALTFTNKAAREMKDRVAQLV 84 >gi|304392202|ref|ZP_07374144.1| ATP-dependent helicase PcrA [Ahrensia sp. R2A130] gi|303296431|gb|EFL90789.1| ATP-dependent helicase PcrA [Ahrensia sp. R2A130] Length = 860 Score = 42.0 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AG+GKT +L R+ +L A PS +L +T T AA EM HR+ Sbjct: 55 VLAGAGTGKTRVLTTRITHILQQRMAWPSQILAVTFTNKAAREMKHRI 102 >gi|284033229|ref|YP_003383160.1| UvrD/REP helicase [Kribbella flavida DSM 17836] gi|283812522|gb|ADB34361.1| UvrD/REP helicase [Kribbella flavida DSM 17836] Length = 1079 Score = 42.0 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 64/153 (41%), Gaps = 25/153 (16%) Query: 7 FQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPS 63 + ++ +DL+ S+Q L + P + A AGSGKT + RV+ L+ P Sbjct: 5 LESTADLVDLLGIPFSDQQLEAITAPLAPGVIVAGAGSGKTTAMAARVVWLICTGQVKPE 64 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE-------ILSAEITKIQGKKPNKSDMSK 116 +L LT TK AA E+ R+ E +T L IL+A + K PN Sbjct: 65 EVLGLTFTKKAANELDVRIREDLTKAGVLGSTLPPDQHPILAAHLRK---NVPNWEP--- 118 Query: 117 ARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 E PG V T HAF ++ + L Sbjct: 119 ---------EEPGEPVVSTYHAFAGTLIAEHGL 142 >gi|221140358|ref|ZP_03564851.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302751778|gb|ADL65955.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 730 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ +EQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 74 AAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 64 AAREMKERVQKLV 76 >gi|120556547|ref|YP_960898.1| DNA-dependent helicase II [Marinobacter aquaeolei VT8] gi|120326396|gb|ABM20711.1| ATP-dependent DNA helicase UvrD [Marinobacter aquaeolei VT8] Length = 726 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +LV R+ L+ + P+++L +T T AA EM +RV +++ Sbjct: 32 VLAGAGSGKTRVLVHRMAWLMSVDRVPPTSILAVTFTNKAAKEMRYRVEQMM 83 >gi|116671302|ref|YP_832235.1| UvrD/REP helicase [Arthrobacter sp. FB24] gi|116611411|gb|ABK04135.1| UvrD/REP helicase [Arthrobacter sp. FB24] Length = 1183 Score = 42.0 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 3/80 (3%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAA 75 S T + + S P V A AGSGKT + RV+ L+AN P +L +T T+ AA Sbjct: 26 SPTAEQSAIISSPLTPRLVIAGAGSGKTATMADRVV-WLVANGWVRPEEVLGVTFTRKAA 84 Query: 76 AEMSHRVLEIITAWSHLSDE 95 E++ R+ ++A ++ E Sbjct: 85 GELASRIRSKLSALQRIAAE 104 >gi|15924895|ref|NP_372429.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|15927479|ref|NP_375012.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus N315] gi|148268378|ref|YP_001247321.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus JH9] gi|150394440|ref|YP_001317115.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus JH1] gi|156980221|ref|YP_001442480.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus Mu3] gi|253316914|ref|ZP_04840127.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006692|ref|ZP_05145293.2| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257426037|ref|ZP_05602459.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus 55/2053] gi|257428710|ref|ZP_05605105.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus 65-1322] gi|257431320|ref|ZP_05607696.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus 68-397] gi|257434038|ref|ZP_05610389.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus E1410] gi|257436942|ref|ZP_05612984.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M876] gi|257793289|ref|ZP_05642268.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9781] gi|258408883|ref|ZP_05681165.1| ATP-dependent DNA helicase [Staphylococcus aureus A9763] gi|258421013|ref|ZP_05683944.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9719] gi|258422982|ref|ZP_05685881.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9635] gi|258430015|ref|ZP_05688385.1| ATP-dependent DNA helicase [Staphylococcus aureus A9299] gi|258443467|ref|ZP_05691809.1| ATP-dependent DNA helicase [Staphylococcus aureus A8115] gi|258445325|ref|ZP_05693516.1| ATP-dependent DNA helicase [Staphylococcus aureus A6300] gi|258447889|ref|ZP_05696023.1| ATP-dependent DNA helicase [Staphylococcus aureus A6224] gi|258453322|ref|ZP_05701307.1| ATP-dependent DNA helicase [Staphylococcus aureus A5937] gi|269203558|ref|YP_003282827.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ED98] gi|282894572|ref|ZP_06302800.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8117] gi|282904536|ref|ZP_06312421.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus C160] gi|282906309|ref|ZP_06314161.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus Btn1260] gi|282909225|ref|ZP_06317041.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911530|ref|ZP_06319330.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus WBG10049] gi|282914703|ref|ZP_06322488.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M899] gi|282917252|ref|ZP_06325007.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus D139] gi|282919740|ref|ZP_06327472.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus C427] gi|282925144|ref|ZP_06332804.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus C101] gi|282928078|ref|ZP_06335685.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A10102] gi|283771055|ref|ZP_06343946.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp. aureus H19] gi|283958666|ref|ZP_06376112.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus A017934/97] gi|293507780|ref|ZP_06667622.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus 58-424] gi|293510282|ref|ZP_06668988.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M809] gi|293539337|ref|ZP_06672016.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M1015] gi|295407286|ref|ZP_06817085.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8819] gi|296275663|ref|ZP_06858170.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus MR1] gi|297246189|ref|ZP_06930040.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8796] gi|54038823|sp|P64319|PCRA_STAAN RecName: Full=ATP-dependent DNA helicase pcrA gi|54041649|sp|P64318|PCRA_STAAM RecName: Full=ATP-dependent DNA helicase pcrA gi|13701698|dbj|BAB42991.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus N315] gi|14247677|dbj|BAB58067.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|147741447|gb|ABQ49745.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus JH9] gi|149946892|gb|ABR52828.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus JH1] gi|156722356|dbj|BAF78773.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus Mu3] gi|257271180|gb|EEV03337.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274354|gb|EEV05866.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus 65-1322] gi|257277969|gb|EEV08625.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus 68-397] gi|257280964|gb|EEV11108.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus E1410] gi|257283731|gb|EEV13856.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M876] gi|257787261|gb|EEV25601.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9781] gi|257840330|gb|EEV64792.1| ATP-dependent DNA helicase [Staphylococcus aureus A9763] gi|257842961|gb|EEV67379.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9719] gi|257846769|gb|EEV70784.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9635] gi|257849609|gb|EEV73577.1| ATP-dependent DNA helicase [Staphylococcus aureus A9299] gi|257851352|gb|EEV75292.1| ATP-dependent DNA helicase [Staphylococcus aureus A8115] gi|257855843|gb|EEV78767.1| ATP-dependent DNA helicase [Staphylococcus aureus A6300] gi|257858821|gb|EEV81690.1| ATP-dependent DNA helicase [Staphylococcus aureus A6224] gi|257864530|gb|EEV87273.1| ATP-dependent DNA helicase [Staphylococcus aureus A5937] gi|262075848|gb|ACY11821.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ED98] gi|282313102|gb|EFB43500.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus C101] gi|282316378|gb|EFB46755.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus C427] gi|282318879|gb|EFB49234.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus D139] gi|282321417|gb|EFB51743.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M899] gi|282324539|gb|EFB54851.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus WBG10049] gi|282326793|gb|EFB57090.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330506|gb|EFB60023.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus Btn1260] gi|282590142|gb|EFB95223.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A10102] gi|282595092|gb|EFC00059.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus C160] gi|282763059|gb|EFC03191.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8117] gi|283459649|gb|EFC06740.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp. aureus H19] gi|283471176|emb|CAQ50387.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ST398] gi|283789706|gb|EFC28528.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus A017934/97] gi|285817586|gb|ADC38073.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus aureus 04-02981] gi|290919872|gb|EFD96941.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M1015] gi|291094843|gb|EFE25111.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus 58-424] gi|291466646|gb|EFF09166.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M809] gi|294967861|gb|EFG43891.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8819] gi|297176896|gb|EFH36153.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8796] gi|298695247|gb|ADI98469.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus ED133] gi|302333570|gb|ADL23763.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp. aureus JKD6159] gi|312437628|gb|ADQ76699.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus TCH60] gi|312830278|emb|CBX35120.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129285|gb|EFT85279.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus CGS03] gi|315193435|gb|EFU23832.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus CGS00] gi|329724791|gb|EGG61295.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus 21172] Length = 730 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ +EQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 74 AAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 64 AAREMKERVQKLV 76 >gi|294775536|ref|ZP_06741046.1| UvrD/REP helicase [Bacteroides vulgatus PC510] gi|294450586|gb|EFG19076.1| UvrD/REP helicase [Bacteroides vulgatus PC510] Length = 1058 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 6/126 (4%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95 A+AGSGKT L ++LL+ N +L +T T A EM R+L ++ W + D+ Sbjct: 12 ASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIW--IKDK 69 Query: 96 ILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + KI + + P + + A L ++ +V+TI +F +++M+ E + Sbjct: 70 DSDPYLQKITEELEMPQEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLARELEL 129 Query: 154 TSHFAI 159 ++ I Sbjct: 130 GANLNI 135 >gi|239617417|ref|YP_002940739.1| Exodeoxyribonuclease V [Kosmotoga olearia TBF 19.5.1] gi|239506248|gb|ACR79735.1| Exodeoxyribonuclease V [Kosmotoga olearia TBF 19.5.1] Length = 991 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 29/151 (19%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTL-----LCL 68 DL E + R ++SA+AG+GKT+ LV +++ A H L + + Sbjct: 8 DLFGYFVEEGRIIVSVNRDIFISASAGTGKTYRLVSHYVQIFEEAFRHGEKLDVHNVVAI 67 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T+ A+ EM RV HL KI+ +P D R LI Sbjct: 68 TFTRKASKEMKERV--------HLRIN------EKIENNEP--GDWKNLRSRLIYAW--- 108 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAI 159 + TIH+FCE I+++ + I F I Sbjct: 109 ----ISTIHSFCERILRESSIFLGIDPGFEI 135 >gi|118466048|ref|YP_880325.1| ATP-dependent DNA helicase PcrA [Mycobacterium avium 104] gi|118167335|gb|ABK68232.1| ATP-dependent DNA helicase PcrA [Mycobacterium avium 104] Length = 774 Score = 42.0 bits (97), Expect = 0.067, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 40/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +RV L+ A +L +T T AAAEM RV+ ++ Sbjct: 38 IVAGAGSGKTAVLTRRVAYLIAARGVGVGQVLAITFTNKAAAEMRERVVRLVG------- 90 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 ++AR + V T H+ C I++ Q L + Sbjct: 91 --------------------NRAR-----------AMWVSTFHSTCVRILRNQASLIEGL 119 Query: 154 TSHFAIADEEQSKKLIE 170 S+F+I D + S++L++ Sbjct: 120 NSNFSIYDADDSRRLLQ 136 >gi|91793704|ref|YP_563355.1| exodeoxyribonuclease V, beta subunit [Shewanella denitrificans OS217] gi|91715706|gb|ABE55632.1| exodeoxyribonuclease V, beta subunit [Shewanella denitrificans OS217] Length = 1355 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 8/139 (5%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEII- 86 S+ + A+AG+GKT+ + LRLLL + L C +T T AA E+ R+ + I Sbjct: 47 SSLIEASAGTGKTYTISGLYLRLLLGHGELPPLSCEQILVVTFTNAATQELRDRIRKRIQ 106 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 A+ + E + +S+ A L L++ + TIH FC+ I+ Sbjct: 107 VAFKCFLGVAVEDEFVNALKQAFPESERQIALKRLDLALKSLDEAAIFTIHGFCQRILAD 166 Query: 147 FPLEANI--TSHFAIADEE 163 E+++ S F + D E Sbjct: 167 LAFESSLLFESEFTLDDSE 185 >gi|121601965|ref|YP_989213.1| putative DNA helicase II [Bartonella bacilliformis KC583] gi|120614142|gb|ABM44743.1| putative DNA helicase II [Bartonella bacilliformis KC583] Length = 816 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L L A+P +L +T T AA EM R+ E++ Sbjct: 63 VLAGAGTGKTRVLTTRIAHILHLGLAYPRQILAVTFTNKAANEMKIRIGELV 114 >gi|269793285|ref|YP_003318189.1| Exodeoxyribonuclease V [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100920|gb|ACZ19907.1| Exodeoxyribonuclease V [Thermanaerovibrio acidaminovorans DSM 6589] Length = 1125 Score = 42.0 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 25/127 (19%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 V A AG+GKTH L RV L+ + LT T+ AA EM R+ +I+ W Sbjct: 33 VKAGAGTGKTHTLSGRVAYLMATQEGLELDQVAVLTFTEKAAQEMGERIRDILLHWGR-- 90 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + K P + S+ G + TIH+F ++++ P EA + Sbjct: 91 -----------ELKMPRLEEASR----------RVGEAYISTIHSFALRLIRENPAEAKL 129 Query: 154 TSHFAIA 160 ++A Sbjct: 130 PVDASVA 136 >gi|154494054|ref|ZP_02033374.1| hypothetical protein PARMER_03399 [Parabacteroides merdae ATCC 43184] gi|154086314|gb|EDN85359.1| hypothetical protein PARMER_03399 [Parabacteroides merdae ATCC 43184] Length = 1075 Score = 42.0 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 14/134 (10%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII--TAWSHLSD 94 A+AG+GKTH L L LL +L +T T A EM R+++ + A SD Sbjct: 7 ASAGAGKTHKLTGEYLTLLFTGPGAFRRILAVTFTNKATDEMKTRIVDELYNLASGRKSD 66 Query: 95 --EILSA--EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 E+L + +T+IQ +K +A +LI IL + TI F + M+ F E Sbjct: 67 YVELLKSAYSLTEIQVRK-------QAAQILIDILHDYSAFNISTIDRFFQQTMRAFTRE 119 Query: 151 ANITSHFAIADEEQ 164 + + I +++ Sbjct: 120 IGLQGGYGIEMDQE 133 >gi|148263393|ref|YP_001230099.1| UvrD/REP helicase [Geobacter uraniireducens Rf4] gi|146396893|gb|ABQ25526.1| UvrD/REP helicase [Geobacter uraniireducens Rf4] Length = 678 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 2/68 (2%) Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAA 74 +S +QL A T A V A AGSGKT ++ R+ LLL P+ +L +T T A Sbjct: 4 LSTLNPQQLAAVKHTEGALLVLAGAGSGKTGVITYRIAHLLLNKKVPAMNILAVTFTNKA 63 Query: 75 AAEMSHRV 82 A EM RV Sbjct: 64 AKEMRERV 71 >gi|49484146|ref|YP_041370.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus MRSA252] gi|295428487|ref|ZP_06821114.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus EMRSA16] gi|68605635|sp|Q6GFF2|PCRA_STAAR RecName: Full=ATP-dependent DNA helicase pcrA gi|49242275|emb|CAG40982.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus MRSA252] gi|295127469|gb|EFG57108.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus EMRSA16] Length = 730 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ +EQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 74 AAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 64 AAREMKERVQKLV 76 >gi|38233432|ref|NP_939199.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae NCTC 13129] gi|38199692|emb|CAE49351.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae] Length = 805 Score = 42.0 bits (97), Expect = 0.068, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 40/141 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ L+ + P +L +T T AAAEM RV ++ + Sbjct: 44 IVAGAGSGKTSVLTRRIAYLMRVRGVQPQNILAITFTNKAAAEMRERVSSLVGPVAQR-- 101 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM-QQFPLEANI 153 + V T H+ C I+ +Q L + Sbjct: 102 ------------------------------------MWVSTFHSTCVRILREQAQLVPGL 125 Query: 154 TSHFAIADEEQSKKLIEEAKK 174 ++F I D + SK+L+ K Sbjct: 126 NTNFTIYDSDDSKRLLSMISK 146 >gi|328953552|ref|YP_004370886.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109] gi|328453876|gb|AEB09705.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109] Length = 652 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 31/56 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 V A AGSGKT LV R+ L+ P +L LT T+ A+ EM HR ++I H Sbjct: 36 VIAGAGSGKTRTLVYRLAYLVEHGIPPWNILLLTFTRKASQEMLHRASQLINRPLH 91 >gi|241661828|ref|YP_002980188.1| UvrD/REP helicase [Ralstonia pickettii 12D] gi|240863855|gb|ACS61516.1| UvrD/REP helicase [Ralstonia pickettii 12D] Length = 970 Score = 42.0 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 32/107 (29%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A AGSGK+ L R+ RL+ P+T++ +T T+ AA + R+ +++ Sbjct: 35 ACAGSGKSQTLAYRIARLMHQGVPPNTIVAITFTEKAADSIKRRIADVLVR--------- 85 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 G+ PN LI G + + TIHAFC+ ++ Sbjct: 86 -------TGQSPN----------LI------GQMFIGTIHAFCQNVL 109 >gi|238792356|ref|ZP_04635990.1| Helicase IV (75 kDa helicase) [Yersinia intermedia ATCC 29909] gi|238728282|gb|EEQ19802.1| Helicase IV (75 kDa helicase) [Yersinia intermedia ATCC 29909] Length = 684 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +LV R LL N A P +L L + AA EM+HR+ Sbjct: 214 VLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNHRI 261 >gi|326336392|ref|ZP_08202563.1| ATP-dependent helicase PcrA [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691566|gb|EGD33534.1| ATP-dependent helicase PcrA [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 773 Score = 42.0 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ P +L LT T AA EM R+ I+ Sbjct: 24 VIAGAGSGKTRVLTYRIAYLMQQGVDPFNILALTFTNKAAREMKERIGRIV 74 >gi|253734985|ref|ZP_04869150.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus TCH130] gi|253727167|gb|EES95896.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus TCH130] Length = 730 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ +EQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 74 AAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 64 AAREMKERVQKLV 76 >gi|220903357|ref|YP_002478669.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867656|gb|ACL47991.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 768 Score = 42.0 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 27/46 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 V A AGSGKT +V R+ L P ++L LT T+ AA EM HR Sbjct: 25 VVAGAGSGKTRTIVYRLAWLAENGVSPESMLLLTFTRKAAQEMLHR 70 >gi|183984523|ref|YP_001852814.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium marinum M] gi|183177849|gb|ACC42959.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium marinum M] Length = 769 Score = 42.0 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 40/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ L+ A +L +T T AAAEM RV+ ++ Sbjct: 32 IVAGAGSGKTAVLTRRIAYLIAARGVGVGQILAITFTNKAAAEMRERVVSLVGG------ 85 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 +A+++ ++ T H+ C I++ Q L + Sbjct: 86 ---------------------RAKYMWVS-----------TFHSTCVRILRNQAALIKGL 113 Query: 154 TSHFAIADEEQSKKLIE 170 S+F+I D + S++L++ Sbjct: 114 NSNFSIYDADDSRRLLQ 130 >gi|139439548|ref|ZP_01772980.1| Hypothetical protein COLAER_02007 [Collinsella aerofaciens ATCC 25986] gi|133775101|gb|EBA38921.1| Hypothetical protein COLAER_02007 [Collinsella aerofaciens ATCC 25986] Length = 966 Score = 42.0 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 41/159 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 ID ++ + E +L+++ V A AGSGKT +L R+ +L P +L +T T Sbjct: 59 IDSLNPAQREAVLSTEG--PLLVLAGAGSGKTRVLTFRIAHMLGDLGVKPWQVLAITFTN 116 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ +I + + G+ Sbjct: 117 KAAAEMRERLAALIPSGTR--------------------------------------GMW 138 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 V T HA C ++++ T F I D++ SK+++ + Sbjct: 139 VCTFHAMCVRMLREDADLLGYTGQFTIYDDDDSKRMVRD 177 >gi|186476348|ref|YP_001857818.1| UvrD/REP helicase [Burkholderia phymatum STM815] gi|184192807|gb|ACC70772.1| UvrD/REP helicase [Burkholderia phymatum STM815] Length = 790 Score = 42.0 bits (97), Expect = 0.069, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L++ EQ A + P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 3 ELLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGFASPPTILGVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMSRL 72 >gi|297182254|gb|ADI18424.1| superfamily I DNA and RNA helicases [uncultured delta proteobacterium HF4000_08N17] Length = 674 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +++QR+ L+ P +L +T T AA EM R+ E ++ Sbjct: 26 AGAGSGKTQVIIQRIAYLIRKKQVPPQQILAVTFTNKAAEEMRERLKETLSG 77 >gi|307244586|ref|ZP_07526690.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus stomatis DSM 17678] gi|306491967|gb|EFM64016.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus stomatis DSM 17678] Length = 623 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVL 83 V A GSGKT I+ QR++ ++L + P T +L ++ TKA++ EM R L Sbjct: 21 VLAGPGSGKTRIISQRIVSMVLDHDIPPTRILAISFTKASSLEMKKRTL 69 >gi|299532528|ref|ZP_07045918.1| UvrD/REP helicase [Comamonas testosteroni S44] gi|298719475|gb|EFI60442.1| UvrD/REP helicase [Comamonas testosteroni S44] Length = 827 Score = 42.0 bits (97), Expect = 0.070, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ EQL A + P A + A AGSGKT +L R+ LL A P +++ +T T Sbjct: 26 LLTGLNDEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQTGQATPGSIMAVTFTNK 85 Query: 74 AAAEMSHRV 82 AA EM R+ Sbjct: 86 AAKEMLTRL 94 >gi|228474096|ref|ZP_04058837.1| ATP-dependent DNA helicase PcrA [Capnocytophaga gingivalis ATCC 33624] gi|228274610|gb|EEK13451.1| ATP-dependent DNA helicase PcrA [Capnocytophaga gingivalis ATCC 33624] Length = 772 Score = 42.0 bits (97), Expect = 0.070, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ P +L LT T AA EM R+ I+ Sbjct: 24 VIAGAGSGKTRVLTYRIAYLIQQGVDPFNILALTFTNKAAREMKERIGRIV 74 >gi|254503334|ref|ZP_05115485.1| UvrD/REP helicase domain protein [Labrenzia alexandrii DFL-11] gi|222439405|gb|EEE46084.1| UvrD/REP helicase domain protein [Labrenzia alexandrii DFL-11] Length = 822 Score = 42.0 bits (97), Expect = 0.070, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D ++ EQ LA + T V A AG+GKT +L R+ +L + A P +L +T T Sbjct: 57 DYLTGLNPEQRLAVETTEGPLLVLAGAGTGKTRVLTTRIAHILASGLARPHEMLAVTFTN 116 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 117 KAAREMKERI 126 >gi|150005966|ref|YP_001300710.1| ATP-dependent helicase [Bacteroides vulgatus ATCC 8482] gi|149934390|gb|ABR41088.1| ATP-dependent helicase [Bacteroides vulgatus ATCC 8482] Length = 1058 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 6/126 (4%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95 A+AGSGKT L ++LL+ N +L +T T A EM R+L ++ W + D+ Sbjct: 12 ASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIW--IKDK 69 Query: 96 ILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + KI + + P + + A L ++ +V+TI +F +++M+ E + Sbjct: 70 DSDPYLQKITEELEMPQEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLARELEL 129 Query: 154 TSHFAI 159 ++ I Sbjct: 130 GANLNI 135 >gi|21283575|ref|NP_646663.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus MW2] gi|49486724|ref|YP_043945.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus MSSA476] gi|57650656|ref|YP_186790.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus COL] gi|87160459|ref|YP_494538.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195804|ref|YP_500614.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222055|ref|YP_001332877.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus str. Newman] gi|161510128|ref|YP_001575787.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253729683|ref|ZP_04863848.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|258451029|ref|ZP_05699065.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A5948] gi|282923244|ref|ZP_06330925.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9765] gi|284024952|ref|ZP_06379350.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp. aureus 132] gi|294849454|ref|ZP_06790196.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9754] gi|297208935|ref|ZP_06925339.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300913008|ref|ZP_07130446.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus TCH70] gi|304379093|ref|ZP_07361840.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|38604904|sp|Q8NVT1|PCRA_STAAW RecName: Full=ATP-dependent DNA helicase pcrA gi|68605626|sp|Q6G828|PCRA_STAAS RecName: Full=ATP-dependent DNA helicase pcrA gi|81694154|sp|Q5HEL7|PCRA_STAAC RecName: Full=ATP-dependent DNA helicase pcrA gi|110282982|sp|Q53727|PCRA_STAA8 RecName: Full=ATP-dependent DNA helicase pcrA gi|21205016|dbj|BAB95711.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus MW2] gi|49245167|emb|CAG43633.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus MSSA476] gi|57284842|gb|AAW36936.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus COL] gi|87126433|gb|ABD20947.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203362|gb|ABD31172.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374855|dbj|BAF68115.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus str. Newman] gi|160368937|gb|ABX29908.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253726569|gb|EES95298.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257861271|gb|EEV84083.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A5948] gi|269941377|emb|CBI49774.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus TW20] gi|282593155|gb|EFB98154.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9765] gi|294823591|gb|EFG40018.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9754] gi|296886425|gb|EFH25354.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885786|gb|EFK80993.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus TCH70] gi|304342328|gb|EFM08220.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196225|gb|EFU26580.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus CGS01] gi|320139714|gb|EFW31583.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus MRSA131] gi|320142369|gb|EFW34183.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus MRSA177] gi|329314582|gb|AEB88995.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp. aureus T0131] gi|329728640|gb|EGG65070.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus 21189] gi|329731448|gb|EGG67811.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus 21193] Length = 730 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ +EQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 74 AAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 64 AAREMKERVQKLV 76 >gi|304382260|ref|ZP_07364767.1| ATP-dependent helicase [Prevotella marshii DSM 16973] gi|304336617|gb|EFM02846.1| ATP-dependent helicase [Prevotella marshii DSM 16973] Length = 1088 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 10/143 (6%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSD- 94 A+AGSGKT L ++LL+ + + +++L +T T A EM R+L ++ W L D Sbjct: 24 ASAGSGKTFTLAVEYMKLLIRDPYAYASILAVTFTNKATEEMKMRILGQLYGIWKLLPDS 83 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + + I P + +A L +L +V+TI F +++++ E ++ Sbjct: 84 QAYTDRICHTLELSPAVA-AERAGIALRLLLHNYSYFRVETIDTFFQSVLRNLARELDLN 142 Query: 155 SHFAI------ADEEQSKKLIEE 171 ++ + +++ KLIEE Sbjct: 143 ANLRVELNDRQVEQQAVDKLIEE 165 >gi|237720843|ref|ZP_04551324.1| ATP-dependent helicase [Bacteroides sp. 2_2_4] gi|229449678|gb|EEO55469.1| ATP-dependent helicase [Bacteroides sp. 2_2_4] Length = 1056 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 4/125 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L ++L++ N +L +T T A AEM R+L + + D+ Sbjct: 9 ASAGSGKTFTLAVEYIKLIILNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQIGDKD 67 Query: 97 LSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A + +I+ + K + A L +L +V+TI +F +++M+ E ++ Sbjct: 68 SEAYLNRIKEETGKTEQEIREAAGVALSYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127 Query: 155 SHFAI 159 + I Sbjct: 128 PNLNI 132 >gi|228904778|ref|ZP_04068832.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222] gi|228854792|gb|EEM99396.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222] Length = 644 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 26/47 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L R+ LL P +L +T T +A EM RV Sbjct: 21 VLAGAGSGKTKVLTTRIAYLLQQGVDPWRILAITFTNKSAKEMKERV 67 >gi|228957601|ref|ZP_04119351.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802050|gb|EEM48917.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis serovar pakistani str. T13001] Length = 630 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ RV Sbjct: 12 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 57 >gi|171742279|ref|ZP_02918086.1| hypothetical protein BIFDEN_01385 [Bifidobacterium dentium ATCC 27678] gi|283456614|ref|YP_003361178.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1] gi|171277893|gb|EDT45554.1| hypothetical protein BIFDEN_01385 [Bifidobacterium dentium ATCC 27678] gi|283103248|gb|ADB10354.1| ATP-dependent DNA helicase, UvrD/REP family [Bifidobacterium dentium Bd1] Length = 1346 Score = 42.0 bits (97), Expect = 0.070, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 30/47 (63%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT+ + +R++ L+ P +L LT T+ AA+E+ RV Sbjct: 27 VVAGAGSGKTYTMTRRIINLIEQGVSPERILGLTFTRKAASELLSRV 73 >gi|59801156|ref|YP_207868.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae FA 1090] gi|240016517|ref|ZP_04723057.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae FA6140] gi|240112994|ref|ZP_04727484.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae MS11] gi|240118044|ref|ZP_04732106.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae PID1] gi|240125781|ref|ZP_04738667.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-92-679] gi|240128301|ref|ZP_04740962.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-93-1035] gi|293399023|ref|ZP_06643188.1| ATP-dependent DNA helicase Rep [Neisseria gonorrhoeae F62] gi|59718051|gb|AAW89456.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae FA 1090] gi|291610437|gb|EFF39547.1| ATP-dependent DNA helicase Rep [Neisseria gonorrhoeae F62] Length = 671 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 +V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 20 FVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72 >gi|218768450|ref|YP_002342962.1| ATP-dependent DNA helicase [Neisseria meningitidis Z2491] gi|254805228|ref|YP_003083449.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha14] gi|121052458|emb|CAM08794.1| ATP-dependent DNA helicase [Neisseria meningitidis Z2491] gi|254668770|emb|CBA06672.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha14] gi|325128494|gb|EGC51372.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis N1568] Length = 671 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 49/187 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKMLP------- 73 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 KP GL + T H+ I+++ Sbjct: 74 -------------KPQTR-----------------GLTICTFHSLGMKILREEANHIGYK 103 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND----EDIETLISD 210 +F+I D S K+I E T E + KA ++I ND ED+ S+ Sbjct: 104 KNFSILDSTDSAKIIGELLGGT-------GKEAVFKAQHQISLWKNDLKTPEDVVQTASN 156 Query: 211 IISNRTA 217 I +TA Sbjct: 157 IWEQQTA 163 >gi|88860136|ref|ZP_01134775.1| DNA helicase IV [Pseudoalteromonas tunicata D2] gi|88818130|gb|EAR27946.1| DNA helicase IV [Pseudoalteromonas tunicata D2] Length = 707 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 10/84 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVL------EIITA 88 V A AGSGKT ++V RV LL + A PS +L L + K AA EM R+ +I A Sbjct: 212 VLAGAGSGKTSVMVGRVGYLLQSGLAKPSQILMLAYGKDAAQEMDLRLKNSLQRHDIKCA 271 Query: 89 WSHLSDEILSAEITKIQGKKPNKS 112 H + + I ++QG PN S Sbjct: 272 TFH---SLALSIINQVQGVMPNIS 292 >gi|261839700|gb|ACX99465.1| ATP-dependent DNA helicase [Helicobacter pylori 52] Length = 671 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ + V A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 2 QLNHEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 61 Query: 78 MSHRVLEIITAWSHL 92 M RV + + S + Sbjct: 62 MIARVAKYFKSSSKI 76 >gi|229043074|ref|ZP_04190803.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH676] gi|228726259|gb|EEL77487.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH676] Length = 630 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ RV Sbjct: 12 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 57 >gi|218130915|ref|ZP_03459719.1| hypothetical protein BACEGG_02510 [Bacteroides eggerthii DSM 20697] gi|217987259|gb|EEC53590.1| hypothetical protein BACEGG_02510 [Bacteroides eggerthii DSM 20697] Length = 760 Score = 42.0 bits (97), Expect = 0.071, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 51/139 (36%), Gaps = 37/139 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT +L ++ LL + P +L LT T AA EM R+ Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLENDYQPWNILALTFTNKAAREMKERI------------- 71 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + + +ARHL + T H+ I+ + TS Sbjct: 72 -------------ARQVGVERARHLWMG-----------TFHSIFLRILHAEAAQIGFTS 107 Query: 156 HFAIADEEQSKKLIEEAKK 174 F I D SK L+ K Sbjct: 108 RFTIYDTADSKSLLRSIIK 126 >gi|328950824|ref|YP_004368159.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884] gi|328451148|gb|AEB12049.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884] Length = 716 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 T A V A AGSGKT +V R+ L+ +P+ +L +T T AA EM R+ ++ Sbjct: 19 TGPALVVAGAGSGKTRTVVHRIAYLIRHRGVYPTEILAVTFTNKAAGEMKERLARMV 75 >gi|317182211|dbj|BAJ59995.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter pylori F57] Length = 676 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ + V A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65 Query: 78 MSHRV 82 M RV Sbjct: 66 MIARV 70 >gi|239638038|ref|ZP_04678997.1| ATP-dependent DNA helicase PcrA [Staphylococcus warneri L37603] gi|239596321|gb|EEQ78859.1| ATP-dependent DNA helicase PcrA [Staphylococcus warneri L37603] Length = 730 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ +EQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LVKNMNAEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63 Query: 74 AAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 64 AAKEMKARVEQLV 76 >gi|319399870|gb|EFV88117.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis FRI909] Length = 729 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 62/162 (38%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ SEQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LVKNMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV HL E A++ + + Sbjct: 64 AAKEMKARV-------EHLVGE--EAQV-----------------------------IWM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D K +I+E KS Sbjct: 86 STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKEVLKS 127 >gi|317177700|dbj|BAJ55489.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter pylori F16] Length = 676 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ + V A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65 Query: 78 MSHRV 82 M RV Sbjct: 66 MIARV 70 >gi|297590041|ref|ZP_06948681.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus MN8] gi|297577169|gb|EFH95883.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus MN8] Length = 739 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ +EQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 74 AAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 64 AAREMKERVQKLV 76 >gi|171920710|ref|ZP_02695904.2| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185179010|ref|ZP_02964760.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024022|ref|ZP_02996781.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518328|ref|ZP_03003841.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524317|ref|ZP_03004355.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867968|ref|ZP_03079965.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273561|ref|ZP_03206097.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554036|ref|YP_002284945.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550706|ref|ZP_03771655.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551585|ref|ZP_03772531.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903451|gb|EDT49740.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209099|gb|EDU06142.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019050|gb|EDU57090.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998009|gb|EDU67106.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660157|gb|EDX53537.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660364|gb|EDX53624.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198250081|gb|EDY74861.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541537|gb|ACI59766.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379400|gb|EEH01765.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379860|gb|EEH02222.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 743 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ L+ + HPS +L T T AA EM RV + I Sbjct: 27 VIAGAGTGKTSVLTLRIAHLITEKHIHPSRILGFTFTNKAADEMKERVGKTI 78 >gi|153810489|ref|ZP_01963157.1| hypothetical protein RUMOBE_00870 [Ruminococcus obeum ATCC 29174] gi|149833668|gb|EDM88749.1| hypothetical protein RUMOBE_00870 [Ruminococcus obeum ATCC 29174] Length = 610 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74 +I + S+Q + + V A GSGKT ++V+R ++ PS +L +T ++AA Sbjct: 1 MIKRNPSQQRAIAHLSGPMMVLAGPGSGKTSVIVERTAYMINEGGISPSNILVVTFSRAA 60 Query: 75 AAEMSHRVL 83 A EM R L Sbjct: 61 AKEMKERFL 69 >gi|15677304|ref|NP_274459.1| ATP-dependent DNA helicase [Neisseria meningitidis MC58] gi|7226688|gb|AAF41807.1| ATP-dependent DNA helicase [Neisseria meningitidis MC58] gi|316984578|gb|EFV63543.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis H44/76] gi|325140608|gb|EGC63128.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis CU385] gi|325199937|gb|ADY95392.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis H44/76] Length = 671 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 49/187 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKMLP------- 73 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 KP GL + T H+ I+++ Sbjct: 74 -------------KPQTR-----------------GLTICTFHSLGMKILREEANHIGYK 103 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND----EDIETLISD 210 +F+I D S K+I E T E + KA ++I ND ED+ S+ Sbjct: 104 KNFSILDSTDSAKIIGELLGGT-------GKEAVFKAQHQISLWKNDLKTPEDVVQTASN 156 Query: 211 IISNRTA 217 I +TA Sbjct: 157 IWEQQTA 163 >gi|78221316|ref|YP_383063.1| ATP-dependent DNA helicase PcrA [Geobacter metallireducens GS-15] gi|78192571|gb|ABB30338.1| ATP-dependent DNA helicase PcrA [Geobacter metallireducens GS-15] Length = 742 Score = 42.0 bits (97), Expect = 0.073, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 44/158 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++V R+ L+ P +L +T T AA EM RV ++ A Sbjct: 24 VLAGAGSGKTRVIVHRIAHLICNLGVPPWQILAVTFTNKAAGEMRERVERLVGA------ 77 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G+ P + T H+ C +++ Sbjct: 78 -----------GEAP----------------------LIATFHSTCARFLRRDIHHLGYD 104 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 S FAI D++ ++KL++E +A + LD ++F Sbjct: 105 SSFAIYDDKDAEKLLKE----VIAGLGLDEKRFPARSF 138 >gi|27468508|ref|NP_765145.1| ATP-depentend DNA helicase [Staphylococcus epidermidis ATCC 12228] gi|293367781|ref|ZP_06614430.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis M23864:W2(grey)] gi|38604841|sp|Q8CRT9|PCRA_STAES RecName: Full=ATP-dependent DNA helicase pcrA gi|27316055|gb|AAO05189.1|AE016749_135 ATP-depentend DNA helicase [Staphylococcus epidermidis ATCC 12228] gi|291318120|gb|EFE58517.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis M23864:W2(grey)] gi|329726871|gb|EGG63329.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU144] gi|329734740|gb|EGG71046.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU045] Length = 729 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ SEQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LVKNMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63 Query: 74 AAAEMSHRV 82 AA EM RV Sbjct: 64 AAKEMKARV 72 >gi|325204434|gb|ADY99887.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M01-240355] Length = 671 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 49/187 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKMLP------- 73 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 KP GL + T H+ I+++ Sbjct: 74 -------------KPQTR-----------------GLTICTFHSLGMKILREEANHIGYK 103 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND----EDIETLISD 210 +F+I D S K+I E T E + KA ++I ND ED+ S+ Sbjct: 104 KNFSILDSTDSAKIIGELLGGT-------GKEAVFKAQHQISLWKNDLKTPEDVVQTASN 156 Query: 211 IISNRTA 217 I +TA Sbjct: 157 IWEQQTA 163 >gi|306822880|ref|ZP_07456256.1| possible ATP-dependent DNA helicase [Bifidobacterium dentium ATCC 27679] gi|304553512|gb|EFM41423.1| possible ATP-dependent DNA helicase [Bifidobacterium dentium ATCC 27679] Length = 885 Score = 42.0 bits (97), Expect = 0.073, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ LL S +L +T T AAAEM R+ ++ Sbjct: 44 IGAGAGSGKTRVLTRRIAWLLAHGIWASQILAITFTNKAAAEMRERLAALV 94 >gi|296501918|ref|YP_003663618.1| ATP-dependent DNA helicase [Bacillus thuringiensis BMB171] gi|296322970|gb|ADH05898.1| ATP-dependent DNA helicase [Bacillus thuringiensis BMB171] Length = 688 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115 >gi|270261242|ref|ZP_06189515.1| hypothetical protein SOD_a04670 [Serratia odorifera 4Rx13] gi|270044726|gb|EFA17817.1| hypothetical protein SOD_a04670 [Serratia odorifera 4Rx13] Length = 684 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 5/83 (6%) Query: 3 YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61 YH+ FQ TI+ S+ + S V A AGSGKT +LV R LL A Sbjct: 185 YHDFFQ----TIESSPLNDSQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRQEAE 240 Query: 62 PSTLLCLTHTKAAAAEMSHRVLE 84 P +L L + AA EM+ R+ E Sbjct: 241 PGQILLLAFGRQAAEEMNERIQE 263 >gi|228920050|ref|ZP_04083399.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839506|gb|EEM84798.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 688 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115 >gi|228938446|ref|ZP_04101055.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971325|ref|ZP_04131952.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977936|ref|ZP_04138316.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis Bt407] gi|228781724|gb|EEM29922.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis Bt407] gi|228788361|gb|EEM36313.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821183|gb|EEM67199.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938953|gb|AEA14849.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar chinensis CT-43] Length = 688 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115 >gi|229143938|ref|ZP_04272355.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST24] gi|228639501|gb|EEK95914.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST24] Length = 688 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115 >gi|194098703|ref|YP_002001765.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae NCCP11945] gi|239999007|ref|ZP_04718931.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae 35/02] gi|240080641|ref|ZP_04725184.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae FA19] gi|240123598|ref|ZP_04736554.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae PID332] gi|193933993|gb|ACF29817.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae NCCP11945] gi|317164300|gb|ADV07841.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae TCDC-NG08107] Length = 671 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 +V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 20 FVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72 >gi|167856609|ref|ZP_02479309.1| exodeoxyribonuclease V beta chain [Haemophilus parasuis 29755] gi|167852265|gb|EDS23579.1| exodeoxyribonuclease V beta chain [Haemophilus parasuis 29755] Length = 1195 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 5/59 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL-----LCLTHTKAAAAEMSHRVLE 84 +S+ + A+AG+GKT+ + LRL+L PS L L +T TKAA E+ R+ E Sbjct: 12 NQSSLIEASAGTGKTYTMANLYLRLILGVRCPSPLTVEQILVVTFTKAATQELRDRIRE 70 >gi|57867385|ref|YP_189012.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis RP62A] gi|81673999|sp|Q5HN29|PCRA_STAEQ RecName: Full=ATP-dependent DNA helicase pcrA gi|57638043|gb|AAW54831.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis RP62A] gi|329734814|gb|EGG71119.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU028] Length = 729 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ SEQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LVKNMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63 Query: 74 AAAEMSHRV 82 AA EM RV Sbjct: 64 AAKEMKARV 72 >gi|330685592|gb|EGG97238.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU121] Length = 730 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ +EQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LVKNMNAEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63 Query: 74 AAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 64 AAKEMKARVEQLV 76 >gi|319638964|ref|ZP_07993722.1| DNA helicase II [Neisseria mucosa C102] gi|317399868|gb|EFV80531.1| DNA helicase II [Neisseria mucosa C102] Length = 735 Score = 42.0 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ +EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNTEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|297537598|ref|YP_003673367.1| UvrD/REP helicase [Methylotenera sp. 301] gi|297256945|gb|ADI28790.1| UvrD/REP helicase [Methylotenera sp. 301] Length = 732 Score = 42.0 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ ++QL A + P +SA + A AGSGKT +L R+ L+ P+ LL +T T Sbjct: 7 LLTGLNNKQLEAVTLPQQSALILAGAGSGKTRVLTARIAWLIQTGQVSPTGLLAVTFTNK 66 Query: 74 AAAEMSHRV 82 AA EM R+ Sbjct: 67 AAKEMLTRI 75 >gi|254558836|ref|YP_003065931.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens DM4] gi|254266114|emb|CAX21866.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens DM4] Length = 795 Score = 42.0 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 12 ETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 E +S EQ A + T V A AG+GKT +L R+ L+ A P +L +T Sbjct: 39 EGASYLSGLNPEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIATGKARPYDILSVT 98 Query: 70 HTKAAAAEMSHRV 82 T AA EM HR+ Sbjct: 99 FTNKAAREMKHRI 111 >gi|240136984|ref|YP_002961453.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens AM1] gi|240006950|gb|ACS38176.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens AM1] Length = 795 Score = 42.0 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 12 ETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 E +S EQ A + T V A AG+GKT +L R+ L+ A P +L +T Sbjct: 39 EGASYLSGLNPEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIATGKARPYDILSVT 98 Query: 70 HTKAAAAEMSHRV 82 T AA EM HR+ Sbjct: 99 FTNKAAREMKHRI 111 >gi|229068885|ref|ZP_04202179.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus F65185] gi|228714169|gb|EEL66050.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus F65185] Length = 688 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115 >gi|229189418|ref|ZP_04316435.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus ATCC 10876] gi|228594009|gb|EEK51811.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus ATCC 10876] Length = 688 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115 >gi|227494918|ref|ZP_03925234.1| DNA helicase [Actinomyces coleocanis DSM 15436] gi|226831370|gb|EEH63753.1| DNA helicase [Actinomyces coleocanis DSM 15436] Length = 1119 Score = 42.0 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 26/47 (55%), Positives = 31/47 (65%), Gaps = 3/47 (6%) Query: 38 ANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT + QRVL LLAN P +L LT T+ AAAE +HR+ Sbjct: 2 AGAGSGKTETMSQRVL-FLLANYGIAPERVLGLTFTRKAAAEFAHRL 47 >gi|163849774|ref|YP_001637817.1| UvrD/REP helicase [Methylobacterium extorquens PA1] gi|163661379|gb|ABY28746.1| UvrD/REP helicase [Methylobacterium extorquens PA1] Length = 795 Score = 42.0 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 12 ETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 E +S EQ A + T V A AG+GKT +L R+ L+ A P +L +T Sbjct: 39 EGASYLSGLNPEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIATGKARPYDILSVT 98 Query: 70 HTKAAAAEMSHRV 82 T AA EM HR+ Sbjct: 99 FTNKAAREMKHRI 111 >gi|217973462|ref|YP_002358213.1| exodeoxyribonuclease V subunit beta [Shewanella baltica OS223] gi|217498597|gb|ACK46790.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS223] Length = 1273 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 10/140 (7%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87 S + A+AG+GKT+ + LRLLL + + L C +T T AA E+ R+ I Sbjct: 29 SRLIEASAGTGKTYTISGLYLRLLLGDGIAAPLTCEQILVVTFTNAATEELRDRIRRRIQ 88 Query: 88 AW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 L I + + P +S+ + A L++ + TIH FC+ I+ Sbjct: 89 VAFKCFLGLTIADPFVQALYDNTP-ESERAIALRRFDLALKSLDEAAIFTIHGFCQRILS 147 Query: 146 QFPLEANI--TSHFAIADEE 163 E+++ S F + D E Sbjct: 148 DLAFESSLLFESDFTLDDSE 167 >gi|94265519|ref|ZP_01289267.1| UvrD/REP helicase [delta proteobacterium MLMS-1] gi|93453960|gb|EAT04306.1| UvrD/REP helicase [delta proteobacterium MLMS-1] Length = 775 Score = 42.0 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 28/52 (53%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 P V A AGSGKT LV R+ L+ P LL LT T+ AA EM+ R Sbjct: 45 PPGPILVIAGAGSGKTRTLVHRLAWLVEQGTPPEQLLLLTFTRKAAQEMTAR 96 >gi|86742478|ref|YP_482878.1| UvrD/REP helicase [Frankia sp. CcI3] gi|86569340|gb|ABD13149.1| UvrD/REP helicase [Frankia sp. CcI3] Length = 1130 Score = 42.0 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 + T + A+ P + A AGSGKT ++ RV+ L+ P +L LT T AA Sbjct: 53 VPYTDEQIAAATAPLEPGVIIAGAGSGKTSVMAARVVWLVATGQVRPDQVLGLTFTTKAA 112 Query: 76 AEMSHRV 82 AE+S RV Sbjct: 113 AELSGRV 119 >gi|30019376|ref|NP_831007.1| ATP-dependent DNA helicase [Bacillus cereus ATCC 14579] gi|229126637|ref|ZP_04255649.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-Cer4] gi|29894919|gb|AAP08208.1| ATP-dependent DNA helicase [Bacillus cereus ATCC 14579] gi|228656577|gb|EEL12403.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-Cer4] Length = 688 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115 >gi|296130376|ref|YP_003637626.1| ATP-dependent DNA helicase PcrA [Cellulomonas flavigena DSM 20109] gi|296022191|gb|ADG75427.1| ATP-dependent DNA helicase PcrA [Cellulomonas flavigena DSM 20109] Length = 858 Score = 42.0 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ LL + A +L +T T AAAEM RV +++ Sbjct: 96 IVAGAGSGKTRVLTHRIAHLLATHRARAGEILAITFTNKAAAEMRERVEQLV 147 >gi|284045042|ref|YP_003395382.1| UvrD/REP helicase [Conexibacter woesei DSM 14684] gi|283949263|gb|ADB52007.1| UvrD/REP helicase [Conexibacter woesei DSM 14684] Length = 746 Score = 42.0 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 62/161 (38%), Gaps = 49/161 (30%) Query: 23 EQLLA--SDPTRSAWVS--------ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 + LLA ++P R A V A AGSGKT +L R+ L+ A P +L +T T Sbjct: 11 DALLAGLNEPQREAVVHGEGPLLILAGAGSGKTRVLTHRIAYLVGTGQARPDEILAITFT 70 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV E+L T+ + Sbjct: 71 NKAAQEMRERV------------EMLVGRRTR--------------------------AM 92 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 V T H+ C +++ T F I D+ +++L++ A Sbjct: 93 WVMTFHSACARMLRADAHRLGYTRQFTIYDQSDARRLVKRA 133 >gi|228906962|ref|ZP_04070829.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis IBL 200] gi|228852710|gb|EEM97497.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis IBL 200] Length = 688 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115 >gi|229177744|ref|ZP_04305118.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 172560W] gi|228605708|gb|EEK63155.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus 172560W] Length = 688 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115 >gi|206968634|ref|ZP_03229590.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus AH1134] gi|218232735|ref|YP_002366011.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus B4264] gi|229078522|ref|ZP_04211081.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock4-2] gi|229108789|ref|ZP_04238395.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-15] gi|229149534|ref|ZP_04277766.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus m1550] gi|206737554|gb|EDZ54701.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus AH1134] gi|218160692|gb|ACK60684.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus B4264] gi|228633880|gb|EEK90477.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus m1550] gi|228674656|gb|EEL29894.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-15] gi|228704747|gb|EEL57174.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock4-2] Length = 688 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115 >gi|154495304|ref|ZP_02034309.1| hypothetical protein PARMER_04361 [Parabacteroides merdae ATCC 43184] gi|154085228|gb|EDN84273.1| hypothetical protein PARMER_04361 [Parabacteroides merdae ATCC 43184] Length = 770 Score = 42.0 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 E + +++++ E ++ +D + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 3 EYLKQLNESQREAVVYTDG--PSLVVAGAGSGKTRVLTYKIAYLLRQGLPPQSILALTFT 60 Query: 72 KAAAAEMSHRV 82 AA EM R+ Sbjct: 61 NKAAREMKDRI 71 >gi|94264521|ref|ZP_01288308.1| UvrD/REP helicase [delta proteobacterium MLMS-1] gi|93455080|gb|EAT05307.1| UvrD/REP helicase [delta proteobacterium MLMS-1] Length = 771 Score = 42.0 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 28/52 (53%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 P V A AGSGKT LV R+ L+ P LL LT T+ AA EM+ R Sbjct: 45 PPGPILVIAGAGSGKTRTLVHRLAWLVEQGTPPEQLLLLTFTRKAAQEMTAR 96 >gi|306822220|ref|ZP_07455602.1| UvrD/REP helicase subfamily [Bifidobacterium dentium ATCC 27679] gi|309802289|ref|ZP_07696397.1| UvrD/REP helicase [Bifidobacterium dentium JCVIHMP022] gi|304554602|gb|EFM42507.1| UvrD/REP helicase subfamily [Bifidobacterium dentium ATCC 27679] gi|308221172|gb|EFO77476.1| UvrD/REP helicase [Bifidobacterium dentium JCVIHMP022] Length = 1346 Score = 42.0 bits (97), Expect = 0.075, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 30/47 (63%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT+ + +R++ L+ P +L LT T+ AA+E+ RV Sbjct: 27 VVAGAGSGKTYTMTRRIINLIEQGVSPERILGLTFTRKAASELLSRV 73 >gi|312194644|ref|YP_004014705.1| UvrD/REP helicase [Frankia sp. EuI1c] gi|311225980|gb|ADP78835.1| UvrD/REP helicase [Frankia sp. EuI1c] Length = 1243 Score = 42.0 bits (97), Expect = 0.075, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 3/71 (4%) Query: 15 DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHT 71 DL+ +E+ LA+ P + A AGSGKT ++ RV+ L+ P+ ++L LT T Sbjct: 84 DLLGVPYTEEQLAAICAPADPGVIVAGAGSGKTSVMAARVVWLVGHEQVPAESILGLTFT 143 Query: 72 KAAAAEMSHRV 82 + AAAE++ R+ Sbjct: 144 RKAAAELNERI 154 >gi|260440441|ref|ZP_05794257.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI2] gi|291043739|ref|ZP_06569455.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI2] gi|291012202|gb|EFE04191.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI2] Length = 671 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 +V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 20 FVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72 >gi|228899910|ref|ZP_04064151.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis IBL 4222] gi|228859689|gb|EEN04108.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis IBL 4222] Length = 688 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115 >gi|229095812|ref|ZP_04226791.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-29] gi|228687645|gb|EEL41544.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-29] Length = 688 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115 >gi|218289482|ref|ZP_03493710.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1] gi|218240350|gb|EED07532.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1] Length = 706 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 T+D ++ + E A+ V A AGSGKT +L+ R+ L+ P +L T T+ Sbjct: 120 TLDQLNDAQREA--ATHKNGPCMVVAAAGSGKTAMLIARIQYLINQGVKPGDILACTFTR 177 Query: 73 AAAAEMSHRVLEII 86 AA EM+ R+L + Sbjct: 178 KAAQEMTDRLLAAV 191 >gi|218896262|ref|YP_002444673.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus G9842] gi|228964277|ref|ZP_04125396.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis serovar sotto str. T04001] gi|218541534|gb|ACK93928.1| ATP-dependent DNA helicase, UvrD/REP family [Bacillus cereus G9842] gi|228795374|gb|EEM42862.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis serovar sotto str. T04001] Length = 688 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115 >gi|313674951|ref|YP_004052947.1| uvrd/rep helicase [Marivirga tractuosa DSM 4126] gi|312941649|gb|ADR20839.1| UvrD/REP helicase [Marivirga tractuosa DSM 4126] Length = 754 Score = 42.0 bits (97), Expect = 0.076, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ + N P ++L LT T AA EM R+ +I+ Sbjct: 24 IIAGAGSGKTRVLTYRIAHLITVKNVDPFSILALTFTNKAAKEMRERIEKIV 75 >gi|228951708|ref|ZP_04113810.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807993|gb|EEM54510.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 688 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115 >gi|323692617|ref|ZP_08106849.1| UvrD/REP helicase [Clostridium symbiosum WAL-14673] gi|323503314|gb|EGB19144.1| UvrD/REP helicase [Clostridium symbiosum WAL-14673] Length = 611 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 A GSGKT ++ QR+ L + N +P+ +L +T T+AAA EM R + + S ++ Sbjct: 22 AGPGSGKTTVITQRIKYLTESLNINPADILVITFTRAAAEEMKERYIRLTGNASRVT 78 >gi|238922029|ref|YP_002935543.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium eligens ATCC 27750] gi|238873701|gb|ACR73409.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium eligens ATCC 27750] Length = 717 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 11/76 (14%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E + I+QT+ +AS P GSGKT +L R+ L+ PS+++ LT Sbjct: 26 EQTEAITQTEGNIRVASVP----------GSGKTFVLTYRIAYLITELFVEPSSIVALTF 75 Query: 71 TKAAAAEMSHRVLEII 86 T AA++M HR+ I+ Sbjct: 76 TNKAASQMKHRLRNIV 91 >gi|229101910|ref|ZP_04232624.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-28] gi|228681493|gb|EEL35656.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock3-28] Length = 688 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115 >gi|323483653|ref|ZP_08089037.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14163] gi|323403080|gb|EGA95394.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14163] Length = 611 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 A GSGKT ++ QR+ L + N +P+ +L +T T+AAA EM R + + S ++ Sbjct: 22 AGPGSGKTTVITQRIKYLTESLNINPADILVITFTRAAAEEMKERYIRLTGNASRVT 78 >gi|237807954|ref|YP_002892394.1| UvrD/REP helicase [Tolumonas auensis DSM 9187] gi|237500215|gb|ACQ92808.1| UvrD/REP helicase [Tolumonas auensis DSM 9187] Length = 1013 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 14/114 (12%) Query: 28 SDPTRSAWVS--------ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 S P R A V+ A AG+GKT ++ + LL + A P +L L AA EM Sbjct: 214 SQPQRQACVTEEDHTLVVAGAGTGKTSTIIGKAGYLLHSGLAEPDNILLLAFGNKAAGEM 273 Query: 79 SHRV-LEIITAWSHLSDEILSAE----ITKIQGKKPNKSDMSKARHLLITILET 127 + R+ L + A + + A + +IQGKKP + ++ + L +ET Sbjct: 274 TERIALRLPEAHARIRATTFHAFGNQIMAEIQGKKPTLTRFAEQKEELRKFIET 327 >gi|218528416|ref|YP_002419232.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4] gi|218520719|gb|ACK81304.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4] Length = 795 Score = 42.0 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 12 ETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 E +S EQ A + T V A AG+GKT +L R+ L+ A P +L +T Sbjct: 39 EGASYLSGLNPEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIATGKARPYDILSVT 98 Query: 70 HTKAAAAEMSHRV 82 T AA EM HR+ Sbjct: 99 FTNKAAREMKHRI 111 >gi|75758386|ref|ZP_00738509.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74494112|gb|EAO57205.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 653 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 26/47 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L R+ LL P +L +T T +A EM RV Sbjct: 30 VLAGAGSGKTKVLTTRIAYLLQQGVDPWRILAITFTNKSAKEMKERV 76 >gi|189500494|ref|YP_001959964.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1] gi|189495935|gb|ACE04483.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1] Length = 1054 Score = 42.0 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 31/139 (22%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 ++SA AGSGKT L + + LL A P ++ T TK AAAE+ RV ++ Sbjct: 8 FISAGAGSGKTTRLTEILAEQLLDREAEPDGIIATTFTKKAAAELKERVRSMLL------ 61 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + N+ D++ ++I E ++ T+++ C ++++F E + Sbjct: 62 --------------EKNRQDLA------VSIAEA----QIGTVNSVCGGLLKRFAFELGL 97 Query: 154 TSHFAIADEEQSKKLIEEA 172 T + DE + + + A Sbjct: 98 TMEQKVIDEHAAMERLSRA 116 >gi|329904285|ref|ZP_08273751.1| ATP-dependent DNA helicase UvrD/PcrA [Oxalobacteraceae bacterium IMCC9480] gi|327548042|gb|EGF32776.1| ATP-dependent DNA helicase UvrD/PcrA [Oxalobacteraceae bacterium IMCC9480] Length = 631 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT +L +RV R L+ N ++ LT T AA EM R+ ++ Sbjct: 22 VLAAAGSGKTRVLTERV-RYLIENTRKDGVIALTFTNKAAEEMQTRLADL 70 >gi|229114763|ref|ZP_04244177.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-3] gi|228668828|gb|EEL24256.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus Rock1-3] Length = 688 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115 >gi|186476506|ref|YP_001857976.1| exodeoxyribonuclease V subunit beta [Burkholderia phymatum STM815] gi|184192965|gb|ACC70930.1| exodeoxyribonuclease V, beta subunit [Burkholderia phymatum STM815] Length = 1241 Score = 42.0 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV----LEIITAWS 90 + A+AG+GKT + +RLLL N +L +T TKAA AE+ R+ E+ A Sbjct: 28 IEASAGTGKTWNICALYVRLLLEKNLSADQILVVTFTKAATAELHERIRGRLAEVQRAIE 87 Query: 91 HLSD-------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 D + +++ +G D+ A ++ L T + TIHAFC+ Sbjct: 88 TGDDGGDPFIIRLFETTLSEARG-----VDLEAAAKIVRRALRTFDQAAIHTIHAFCQRA 142 Query: 144 MQQ 146 +Q+ Sbjct: 143 LQE 145 >gi|283782861|ref|YP_003373615.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis 409-05] gi|283441838|gb|ADB14304.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis 409-05] Length = 1023 Score = 42.0 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ +L A PS +L +T T AAAEM R+ ++I Sbjct: 161 IGAGAGSGKTRVLTRRIAWILSQKGAWPSQILAITFTNKAAAEMRERLSKLI 212 >gi|219871763|ref|YP_002476138.1| exodeoxyribonuclease V subunit beta [Haemophilus parasuis SH0165] gi|219691967|gb|ACL33190.1| exodeoxyribonuclease V, beta subunit [Haemophilus parasuis SH0165] Length = 1195 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 5/59 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL-----LCLTHTKAAAAEMSHRVLE 84 +S+ + A+AG+GKT+ + LRL+L PS L L +T TKAA E+ R+ E Sbjct: 12 NQSSLIEASAGTGKTYTMANLYLRLILGVRCPSPLTVEQILVVTFTKAATQELRDRIRE 70 >gi|207108775|ref|ZP_03242937.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Helicobacter pylori HPKX_438_CA4C1] Length = 297 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A+AG+GKT +V R+L LL P +L LT T A+ EM RV +S LS + Sbjct: 18 VIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNEMIARV----AKYSKLSSK 73 Query: 96 I 96 I Sbjct: 74 I 74 >gi|168703681|ref|ZP_02735958.1| ATP-dependent DNA helicase [Gemmata obscuriglobus UQM 2246] Length = 755 Score = 42.0 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT ++ +RV LL A +L +T T AA EM +RV Sbjct: 28 ILAGAGSGKTRVITRRVAYLLRAGVRAHNILAITFTNKAAGEMKNRV 74 >gi|119715745|ref|YP_922710.1| UvrD/REP helicase [Nocardioides sp. JS614] gi|119536406|gb|ABL81023.1| UvrD/REP helicase [Nocardioides sp. JS614] Length = 1073 Score = 42.0 bits (97), Expect = 0.078, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 S P A V A AGSGKT ++ RV+ L++ P +L LT T AA+E+ R+ + + Sbjct: 30 SAPLAPAVVIAGAGSGKTTLMAARVVYLVVTGQVRPDEVLGLTFTTKAASELRQRIRQAL 89 Query: 87 TAWSHLSD 94 A L + Sbjct: 90 KAAGALEE 97 >gi|89076421|ref|ZP_01162746.1| putative exodeoxyribonuclease V [Photobacterium sp. SKA34] gi|89047889|gb|EAR53482.1| putative exodeoxyribonuclease V [Photobacterium sp. SKA34] Length = 1203 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 15/148 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT +V LRLLL + + +L +T T+AA AE+ R+ + Sbjct: 23 IEASAGTGKTFTIVSLYLRLLLGHGNDDCAHLKPLDVDQILVVTFTEAATAELRDRIRKG 82 Query: 86 I-TAWSHLS-DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 I A+ S E + I + D A +L V TIH FC+ + Sbjct: 83 IRDAYVSFSRGESVGPFKDTISALLNDIHDHKYAARVLKDAERRMDEASVYTIHGFCQRM 142 Query: 144 MQQFPLEAN--ITSHFAIADEEQSKKLI 169 + Q E+ + F + DE Q K L+ Sbjct: 143 LTQNAFESGCRFNNEF-VTDESQLKNLV 169 >gi|300932820|ref|ZP_07148076.1| putative ATP-dependent DNA helicase II [Corynebacterium resistens DSM 45100] Length = 1224 Score = 42.0 bits (97), Expect = 0.079, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 3/64 (4%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEM 78 + Q++ + P+ + V A AG+GKT + RV+ L+AN + P +L LT T+ AA+E+ Sbjct: 40 QQAQVIGAKPSGAYLVVAGAGAGKTETMAARVV-WLVANGYVRPEQVLGLTFTRKAASEL 98 Query: 79 SHRV 82 + RV Sbjct: 99 AQRV 102 >gi|210635292|ref|ZP_03298488.1| hypothetical protein COLSTE_02419 [Collinsella stercoris DSM 13279] gi|210158453|gb|EEA89424.1| hypothetical protein COLSTE_02419 [Collinsella stercoris DSM 13279] Length = 1197 Score = 42.0 bits (97), Expect = 0.079, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 49/163 (30%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPS-----------------TLLCLTHTKAAAAE 77 +VSA AGSGKT L QR++ L + P +L +T T+ AA E Sbjct: 22 FVSAGAGSGKTFTLTQRIMYALRPGSKPQGQWADPQVPEPFLDSIDQVLAITFTEKAAEE 81 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 + R+ + L DE + AE K+ + TIH Sbjct: 82 LKERIR------AALIDEGMDAEAAKVDNA------------------------WISTIH 111 Query: 138 AFCEAIMQQFPLEANITSHFAIAD--EEQSKKLIEEAKKSTLA 178 C I++ L+ + F +A+ E+ + +E + +A Sbjct: 112 GMCSRIIRAHALDLGLDPAFGVAEYAEDLKRAAVEHVLRRAIA 154 >gi|42524707|ref|NP_970087.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100] gi|39576917|emb|CAE78146.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100] Length = 762 Score = 42.0 bits (97), Expect = 0.079, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 41/157 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ ++ S +LC+T T AA EM HR+ +I+ Sbjct: 28 ILAGAGSGKTRVLTHRMANMIGQGVAASDEILCVTFTNKAAKEMEHRIYKIL-------- 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 SDM +++T L + T H+FC +++Q + Sbjct: 80 -----------------SDMG-------AVVQTQ--LWISTFHSFCVRVLRQHITLLDYK 113 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 F I D S + + KK A LD N+++ A Sbjct: 114 PFFGIYD---SSDQLSQIKKVMTA---LDINDKMYPA 144 >gi|189346089|ref|YP_001942618.1| UvrD/REP helicase [Chlorobium limicola DSM 245] gi|189340236|gb|ACD89639.1| UvrD/REP helicase [Chlorobium limicola DSM 245] Length = 741 Score = 42.0 bits (97), Expect = 0.079, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 V A AGSGKT ++ R+ L+ N P +L LT T AA EM HR+ +++ + S Sbjct: 25 VLAGAGSGKTRVITYRIAHLIRNNGVTPYNILALTFTNKAAGEMRHRIDKLLQSGS 80 >gi|289641103|ref|ZP_06473271.1| ATP-dependent DNA helicase PcrA [Frankia symbiont of Datisca glomerata] gi|289509044|gb|EFD29975.1| ATP-dependent DNA helicase PcrA [Frankia symbiont of Datisca glomerata] Length = 822 Score = 42.0 bits (97), Expect = 0.080, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 50/135 (37%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ LL A +L +T T AA EM RV ++ A + Sbjct: 71 VVAGAGSGKTRVLTNRIAYLLAARGVRAGEILAITFTNKAANEMKERVAALVGARTR--- 127 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + V T H+ C I++ T Sbjct: 128 -----------------------------------AMWVSTFHSACVRILRSHAKRIGFT 152 Query: 155 SHFAIADEEQSKKLI 169 S F+I D +++LI Sbjct: 153 SGFSIYDAADAQRLI 167 >gi|94311565|ref|YP_584775.1| ATP-dependent DNA helicase UvrD [Cupriavidus metallidurans CH34] gi|93355417|gb|ABF09506.1| DNA-dependent ATPase I and helicase II [Cupriavidus metallidurans CH34] Length = 787 Score = 42.0 bits (97), Expect = 0.080, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKA 73 L++ +EQL A + P A + A AGSGKT +L R+ L+ P+ +L +T T Sbjct: 4 LLANLNAEQLAAVTLPDEPALILAGAGSGKTRVLTTRIAWLIQNGRVSPAGILAVTFTNK 63 Query: 74 AAAEMSHRVLEII 86 AA EM R+ ++ Sbjct: 64 AAKEMQTRLSSML 76 >gi|257465356|ref|ZP_05629727.1| exodeoxyribonuclease V beta chain [Actinobacillus minor 202] gi|257451016|gb|EEV25059.1| exodeoxyribonuclease V beta chain [Actinobacillus minor 202] Length = 1204 Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 65/141 (46%), Gaps = 27/141 (19%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPST---------LLCLTHTKAAAAEMSHRVL 83 S+ + A+AG+GKTH + LRLLL H + +L +T TKAA E+ R+ Sbjct: 16 SSLIEASAGTGKTHTIKNLYLRLLLGLGHDKSAFQPLTVAQILVVTFTKAATEELRERIR 75 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDM---------SKARHLL-ITILETPGGL-K 132 E I A E LS GK+ D +K LL + I E L Sbjct: 76 ENIQACYTFFQERLS-------GKETQSDDFFEQLFEQVENKEEALLRLRIAEREIDLAS 128 Query: 133 VQTIHAFCEAIMQQFPLEANI 153 V TIH+FC+ ++ QF ++ + Sbjct: 129 VFTIHSFCQKMLFQFAFDSGV 149 >gi|229166170|ref|ZP_04293930.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH621] gi|228617268|gb|EEK74333.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH621] Length = 688 Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKHVHPRNILLLTFTQKAAEEIRSRV 115 >gi|289167909|ref|YP_003446178.1| exonuclease RexA [Streptococcus mitis B6] gi|288907476|emb|CBJ22313.1| exonuclease RexA [Streptococcus mitis B6] Length = 1216 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ SD+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISQQIQESDD 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|261391767|emb|CAX49221.1| DNA helicase II [Neisseria meningitidis 8013] Length = 735 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|229132128|ref|ZP_04260987.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST196] gi|228651348|gb|EEL07324.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus BDRD-ST196] Length = 688 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKHVHPRNILLLTFTQKAAEEIRSRV 115 >gi|153806228|ref|ZP_01958896.1| hypothetical protein BACCAC_00483 [Bacteroides caccae ATCC 43185] gi|149130905|gb|EDM22111.1| hypothetical protein BACCAC_00483 [Bacteroides caccae ATCC 43185] Length = 1056 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 4/125 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + D+ Sbjct: 9 ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYG-IQTGDKG 67 Query: 97 LSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A + +I+ + K + A L +L +V+TI +F +++M+ E ++ Sbjct: 68 SEAYLNRIKEETGKTEQEIREAASIALGYMLHDYSRFRVETIDSFFQSVMRNLARELELS 127 Query: 155 SHFAI 159 + I Sbjct: 128 PNLNI 132 >gi|229010620|ref|ZP_04167821.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides DSM 2048] gi|228750664|gb|EEM00489.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus mycoides DSM 2048] Length = 688 Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKHVHPRNILLLTFTQKAAEEIRSRV 115 >gi|229016581|ref|ZP_04173520.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1273] gi|229022789|ref|ZP_04179313.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1272] gi|228738601|gb|EEL89073.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1272] gi|228744668|gb|EEL94731.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH1273] Length = 688 Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115 >gi|162448187|ref|YP_001621319.1| DNA helicase II [Acholeplasma laidlawii PG-8A] gi|161986294|gb|ABX81943.1| DNA helicase II [Acholeplasma laidlawii PG-8A] Length = 703 Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 35 WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 +V A AG+GKT L R+ L+ P ++L +T T AA EM R++E+ ++ Sbjct: 26 FVVAGAGTGKTRTLTTRIAYLIEELGVAPDSILAVTFTNKAAREMKERIVEMAGPYA 82 >gi|163939126|ref|YP_001644010.1| UvrD/REP helicase [Bacillus weihenstephanensis KBAB4] gi|163861323|gb|ABY42382.1| UvrD/REP helicase [Bacillus weihenstephanensis KBAB4] Length = 688 Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKHVHPRNILLLTFTQKAAEEIRSRV 115 >gi|302668932|ref|YP_003832757.1| ATP-dependent DNA helicase UvrD/REP family protein [Butyrivibrio proteoclasticus B316] gi|302397272|gb|ADL36175.1| ATP-dependent DNA helicase UvrD/REP family [Butyrivibrio proteoclasticus B316] Length = 924 Score = 42.0 bits (97), Expect = 0.082, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Query: 7 FQEHSETIDLIS-QTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPST 64 +E + T D+ + + Q A + T W ++A AG+GKT + RV LL P Sbjct: 280 LEEEASTKDISNLKLTQAQTAAVNVTNGFWRINAGAGAGKTMVTALRVWNLLNQGVRPEE 339 Query: 65 LLCLTHTKAAAAEMSHRV 82 +L +T T A A EM R+ Sbjct: 340 ILLITFTNAGAKEMRDRI 357 >gi|261378597|ref|ZP_05983170.1| DNA helicase II [Neisseria cinerea ATCC 14685] gi|269144930|gb|EEZ71348.1| DNA helicase II [Neisseria cinerea ATCC 14685] Length = 735 Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|171058460|ref|YP_001790809.1| exodeoxyribonuclease V subunit beta [Leptothrix cholodnii SP-6] gi|170775905|gb|ACB34044.1| exodeoxyribonuclease V, beta subunit [Leptothrix cholodnii SP-6] Length = 1272 Score = 42.0 bits (97), Expect = 0.082, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 18/137 (13%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAH-------------PSTLLCLTHTKAAAAEMS 79 S + A+AG+GKT + LRL+L + P+ +L +T T+AA E+S Sbjct: 14 SHLIEASAGTGKTWTIAALYLRLVLGHGERESVDSPLPRPLLPAEILVMTFTRAATRELS 73 Query: 80 HRVLE-IITAWSHLSDEILSAE----ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 R+ E +I A E A + ++ P +++ A + L E V Sbjct: 74 DRIRERLIEAARCFRGEAEPAPHDHFLRDLRADYPGEAERRDAAYRLALAAEGMDDAAVH 133 Query: 135 TIHAFCEAIMQQFPLEA 151 TI A+C+ ++++ ++ Sbjct: 134 TIDAWCQRMLREHAFDS 150 >gi|298253336|ref|ZP_06977128.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis 5-1] gi|297532731|gb|EFH71617.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis 5-1] Length = 978 Score = 41.6 bits (96), Expect = 0.083, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ +L A PS +L +T T AAAEM R+ ++I Sbjct: 139 IGAGAGSGKTRVLTRRIAWILSQKGAWPSQILAITFTNKAAAEMRERLSKLI 190 >gi|154148234|ref|YP_001406664.1| ATP-dependent DNA helicase PcrA [Campylobacter hominis ATCC BAA-381] gi|153804243|gb|ABS51250.1| ATP-dependent DNA helicase PcrA [Campylobacter hominis ATCC BAA-381] Length = 686 Score = 41.6 bits (96), Expect = 0.083, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 ++++L A+ + A AGSGKT + R+ LL P++ L LT T AA+EM Sbjct: 8 NENQKLAATHIDGPMLILAGAGSGKTKTITSRLAYLLSNGVDPASTLTLTFTNKAASEMR 67 Query: 80 HRVLEII 86 R +I Sbjct: 68 LRAYSLI 74 >gi|78223920|ref|YP_385667.1| UvrD/REP helicase [Geobacter metallireducens GS-15] gi|78195175|gb|ABB32942.1| UvrD/REP helicase [Geobacter metallireducens GS-15] Length = 678 Score = 41.6 bits (96), Expect = 0.083, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 11/84 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE---------- 84 V A AGSGKT ++ R+ LLL +L +T T AA EM RV E Sbjct: 24 VLAGAGSGKTRVITYRIGHLLLDKKVKAEDILAVTFTNKAAGEMKERVRELVGRGKAKGM 83 Query: 85 IITAWSHLSDEILSAEITKIQGKK 108 +I+ + L IL +I ++ KK Sbjct: 84 VISTFHSLGVRILRRDIERLGYKK 107 >gi|319902330|ref|YP_004162058.1| UvrD/REP helicase [Bacteroides helcogenes P 36-108] gi|319417361|gb|ADV44472.1| UvrD/REP helicase [Bacteroides helcogenes P 36-108] Length = 1104 Score = 41.6 bits (96), Expect = 0.084, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 20/142 (14%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA-WSH--LS 93 A+AGSGKT L ++ L+ N H +L +T T A AEM R+L+ + W S Sbjct: 8 ASAGSGKTFTLAVEYIKHLIQNPHAYRQILAVTFTNKATAEMKERILQQLYGIWKGDPAS 67 Query: 94 DEILSAEITKIQGKKPNKSDM----------------SKARHLLITILETPGGLKVQTIH 137 D LS + +K N S+ +A L +L +V+TI Sbjct: 68 DAYLSRIKEDLGKRKDNLSETEVISPFTAGSEDEELRKRAGMALQYMLHDYSRFRVETID 127 Query: 138 AFCEAIMQQFPLEANITSHFAI 159 +F +++M+ E ++ + I Sbjct: 128 SFFQSVMRNLARELELSPNLNI 149 >gi|289523886|ref|ZP_06440740.1| UvrD/REP helicase family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502542|gb|EFD23706.1| UvrD/REP helicase family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 1191 Score = 41.6 bits (96), Expect = 0.084, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 12/138 (8%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA AGSGKT L R L+ A +L +T T+ AA EM ++L + W + Sbjct: 33 VSAGAGSGKTRTLSWRFAWLVATGRARHDEILTITFTEKAAQEMEDKILSTLGDWLN--- 89 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + S+ +++ + + D K L + + ++ TIH+F +++ + I+ Sbjct: 90 AVRSSNLSRQK-----REDTEKRLELACSRFDEA---QISTIHSFAMNLLKSYSQFLEIS 141 Query: 155 SHFAIADEEQSKKLIEEA 172 F I +Q + A Sbjct: 142 PAFNIVTPQQEDLFYQSA 159 >gi|269302561|gb|ACZ32661.1| ATP-dependent DNA helicase pcrA [Chlamydophila pneumoniae LPCoLN] Length = 639 Score = 41.6 bits (96), Expect = 0.084, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 29/54 (53%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 P V A AG+GKT ++ R+L L+ P +L +T T AA E+ R++ Sbjct: 18 PLNPVLVLAGAGAGKTRVVTYRILHLINQGIAPREILAVTFTNKAARELKERIV 71 >gi|262038007|ref|ZP_06011419.1| ATP-dependent DNA helicase PcrA [Leptotrichia goodfellowii F0264] gi|261747960|gb|EEY35387.1| ATP-dependent DNA helicase PcrA [Leptotrichia goodfellowii F0264] Length = 733 Score = 41.6 bits (96), Expect = 0.084, Method: Compositional matrix adjust. Identities = 38/162 (23%), Positives = 60/162 (37%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 ++ + SEQ A++ T + A AGSGKT + R+ ++ P +L LT T Sbjct: 3 ILDELNSEQKKAAEKTEGPILILAGAGSGKTRTVTYRIAHMIKEIGISPMNILALTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R +I A S+ L V Sbjct: 63 AAREMKERAEALIGADSY--------------------------------------NLVV 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+F +++ + +F I D + K +I + KK Sbjct: 85 STFHSFSVKLLKTYADRIGFGRNFNIYDVDDQKSIITKIKKD 126 >gi|254819357|ref|ZP_05224358.1| ATP-dependent DNA helicase PcrA [Mycobacterium intracellulare ATCC 13950] Length = 780 Score = 41.6 bits (96), Expect = 0.084, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 40/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ L+ A +L +T T AAAEM RV+ ++ Sbjct: 38 IVAGAGSGKTAVLTRRIAYLIAARGVGVGQVLAITFTNKAAAEMRERVVRLVG------- 90 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 ++AR + V T H+ C I++ Q L + Sbjct: 91 --------------------NRAR-----------AMWVSTFHSTCVRILRNQASLIEGL 119 Query: 154 TSHFAIADEEQSKKLIE 170 S+F+I D + S++L++ Sbjct: 120 NSNFSIYDADDSRRLLQ 136 >gi|225010856|ref|ZP_03701324.1| UvrD/REP helicase [Flavobacteria bacterium MS024-3C] gi|225005064|gb|EEG43018.1| UvrD/REP helicase [Flavobacteria bacterium MS024-3C] Length = 773 Score = 41.6 bits (96), Expect = 0.084, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ +L LT T AA EM HR+ I+ Sbjct: 25 VIAGAGSGKTRVLTIRIAHLMSLGVDSFNILALTFTNKAAREMKHRISSIV 75 >gi|242310535|ref|ZP_04809690.1| ATP-dependent helicase [Helicobacter pullorum MIT 98-5489] gi|239522933|gb|EEQ62799.1| ATP-dependent helicase [Helicobacter pullorum MIT 98-5489] Length = 676 Score = 41.6 bits (96), Expect = 0.084, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 31/53 (58%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 P+ V A+AG+GKT +V R+ LL + P+ +L LT T AA EM R+ Sbjct: 17 PSGYNLVIASAGTGKTSTIVGRISHLLESGITPNEILLLTFTNKAAQEMLARL 69 >gi|325570044|ref|ZP_08145969.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus ATCC 12755] gi|325156872|gb|EGC69043.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus ATCC 12755] Length = 785 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ L+ N +P +L +T T AA EM RV +++ + Sbjct: 68 AGAGSGKTRVLTHRIAYLIEEKNVNPWNILAITFTNKAAREMKERVSQLLGS 119 >gi|294339627|emb|CAZ87986.1| DNA helicase II [Thiomonas sp. 3As] Length = 781 Score = 41.6 bits (96), Expect = 0.085, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 LI Q EQ A + P +A + A AGSGKT +L R+ L+ P+ +L +T T Sbjct: 4 LIQQLNPEQRAAVTLPAENALILAGAGSGKTRVLTTRIAWLISTGQVTPAGILAVTFTNK 63 Query: 74 AAAEMSHRV 82 AA EM R+ Sbjct: 64 AAKEMMARL 72 >gi|90580937|ref|ZP_01236738.1| putative exodeoxyribonuclease V [Vibrio angustum S14] gi|90437815|gb|EAS63005.1| putative exodeoxyribonuclease V [Vibrio angustum S14] Length = 1203 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 15/148 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT +V LRLLL + + +L +T T+AA AE+ R+ + Sbjct: 23 IEASAGTGKTFTIVSLYLRLLLGHGNDDCAHLKPLDVDQILVVTFTEAATAELRDRIRKG 82 Query: 86 I-TAWSHLS-DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 I A+ S E + I + D A +L V TIH FC+ + Sbjct: 83 IRDAYVSFSRGESVGPFKDTISALLNDIHDHKYAARVLKDAERRMDEASVYTIHGFCQRM 142 Query: 144 MQQFPLEAN--ITSHFAIADEEQSKKLI 169 + Q E+ + F + DE Q K L+ Sbjct: 143 LTQNAFESGCRFNNEF-VTDESQLKNLV 169 >gi|33860862|ref|NP_892423.1| UvrD/REP helicase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633804|emb|CAE18763.1| UvrD/REP helicase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 802 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 20/145 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+ N+ P +L +T T AA EM R L++ Sbjct: 29 VVAGAGSGKTKALTHRIANLIENNSVDPHNILAVTFTNKAAKEMKAR-LQV--------- 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITIL--ETPGGLKVQTIHAFCEAIMQ------Q 146 +L+ EI Q +P + ++ L T + E L + T HA +++ Q Sbjct: 79 -LLAQEIALNQFGQPWSTLKEFDQNQLRTNIDQERLRDLWIGTFHALFSRLLRYDIEKYQ 137 Query: 147 FPLEANITSHFAIADEEQSKKLIEE 171 P T F+I DE S+ L++E Sbjct: 138 DPEGLTWTRQFSIYDETDSQTLVKE 162 >gi|88802827|ref|ZP_01118354.1| ATP-dependent DNA helicase [Polaribacter irgensii 23-P] gi|88781685|gb|EAR12863.1| ATP-dependent DNA helicase [Polaribacter irgensii 23-P] Length = 773 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 26/49 (53%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ L+ +L LT T AA EM R+ ++ Sbjct: 27 AGAGSGKTRVLTYRIAHLMKQGVDSFNILSLTFTNKAAKEMKKRIASVV 75 >gi|330813748|ref|YP_004357987.1| ATP-dependent DNA helicase UvrD/PcrA [Candidatus Pelagibacter sp. IMCC9063] gi|327486843|gb|AEA81248.1| ATP-dependent DNA helicase UvrD/PcrA [Candidatus Pelagibacter sp. IMCC9063] Length = 744 Score = 41.6 bits (96), Expect = 0.086, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L RV L+ + + +LC+T T AA EM RV ++ Sbjct: 33 AGAGSGKTKVLTTRVTHLIQSKKCFSNQILCVTFTNKAANEMRERVQGLVVG 84 >gi|320095790|ref|ZP_08027434.1| UvrD/REP helicase [Actinomyces sp. oral taxon 178 str. F0338] gi|319977274|gb|EFW08973.1| UvrD/REP helicase [Actinomyces sp. oral taxon 178 str. F0338] Length = 1196 Score = 41.6 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKAAAAEMSHRV 82 P R V A AGSGKT + RVL L+AN PS++L LT T+ AA E+ R+ Sbjct: 44 PRRPLLVVAGAGSGKTETMSMRVL-WLVANHEDIAPSSVLGLTFTRKAAGELGDRL 98 >gi|238018443|ref|ZP_04598869.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748] gi|237864914|gb|EEP66204.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748] Length = 862 Score = 41.6 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 74/184 (40%), Gaps = 40/184 (21%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79 + +Q + + ++ + A+AG+GKT+ L RV L+ A +LC+T T AA EM Sbjct: 5 REQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGGYAKAENILCMTFTNKAANEMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ ++ + P K+ +++ T H+F Sbjct: 65 DRIQSLVGS--------------------PAKA------------------VEISTFHSF 86 Query: 140 CEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++QQ + + I DEE K+L E + L + N + K + + Sbjct: 87 CFFVLQQEGKRNETLYTDVTIFDEEDCKELSEPYRPGKLREMSFANIIGMVKEYRSLYGF 146 Query: 199 SNDE 202 +D+ Sbjct: 147 YSDD 150 >gi|237709818|ref|ZP_04540299.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229455911|gb|EEO61632.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 796 Score = 41.6 bits (96), Expect = 0.086, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L ++ LL P ++L LT T AA EM R+ Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLEQGYTPWSILALTFTNKAAREMKERI 71 >gi|229056964|ref|ZP_04196359.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH603] gi|228720353|gb|EEL71927.1| ATP-dependent DNA helicase, UvrD/REP [Bacillus cereus AH603] Length = 688 Score = 41.6 bits (96), Expect = 0.086, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKHVHPRNILLLTFTQKAAEEIRSRV 115 >gi|227543585|ref|ZP_03973634.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri CF48-3A] gi|300909386|ref|ZP_07126847.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri SD2112] gi|227186425|gb|EEI66496.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri CF48-3A] gi|300893251|gb|EFK86610.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri SD2112] Length = 757 Score = 41.6 bits (96), Expect = 0.086, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 11/100 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEI--------- 85 V A AGSGKT +L RV L+ N P +L +T T AA EM RV ++ Sbjct: 28 VMAGAGSGKTRVLTHRVAYLIEENGVLPWNILAITFTNKAAREMKERVGKLLGESANEIW 87 Query: 86 ITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITI 124 ++ + L IL +I KI + +D S+ R L+ I Sbjct: 88 VSTFHALCVRILRRDIEKIGYNRAFTIADTSEQRTLMKRI 127 >gi|33242131|ref|NP_877072.1| hypothetical protein CpB0800 [Chlamydophila pneumoniae TW-183] gi|33236641|gb|AAP98729.1| UvrD [Chlamydophila pneumoniae TW-183] Length = 639 Score = 41.6 bits (96), Expect = 0.086, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 29/54 (53%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 P V A AG+GKT ++ R+L L+ P +L +T T AA E+ R++ Sbjct: 18 PLNPVLVLAGAGAGKTRVVTYRILHLINQGIAPREILAVTFTNKAARELKERIV 71 >gi|15965897|ref|NP_386250.1| DNA helicase II protein [Sinorhizobium meliloti 1021] gi|307308207|ref|ZP_07587916.1| UvrD/REP helicase [Sinorhizobium meliloti BL225C] gi|307319674|ref|ZP_07599099.1| UvrD/REP helicase [Sinorhizobium meliloti AK83] gi|15075166|emb|CAC46723.1| Probable DNA helicase II [Sinorhizobium meliloti 1021] gi|306894605|gb|EFN25366.1| UvrD/REP helicase [Sinorhizobium meliloti AK83] gi|306901205|gb|EFN31811.1| UvrD/REP helicase [Sinorhizobium meliloti BL225C] Length = 857 Score = 41.6 bits (96), Expect = 0.086, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65 ++ ++ D +S EQ A + V A AG+GKT +L R+ +L A+PS + Sbjct: 35 RDKAQRPDYVSGLNPEQREAVEALEGPVLVLAGAGTGKTRVLTTRIAHILSTGRAYPSQI 94 Query: 66 LCLTHTKAAAAEMSHRV 82 L +T T AA EM R+ Sbjct: 95 LAVTFTNKAAREMKERI 111 >gi|315604922|ref|ZP_07879980.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313461|gb|EFU61520.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310] Length = 1138 Score = 41.6 bits (96), Expect = 0.087, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHTKAAA 75 + T + + P R V A AGSGKT + RVL LL + P+++L LT T+ AA Sbjct: 17 TPTPEQVRVVESPRRPLLVVAGAGSGKTETMSMRVLWLLANHPDLTPASILGLTFTRKAA 76 Query: 76 AEMSHRV 82 E+ R+ Sbjct: 77 GELGDRL 83 >gi|289178716|gb|ADC85962.1| PcrA [Bifidobacterium animalis subsp. lactis BB-12] Length = 1037 Score = 41.6 bits (96), Expect = 0.087, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ +L A PS +L +T T AAAEM R+ +I Sbjct: 166 IGAGAGSGKTRVLTRRIAWILTQFGAWPSQVLAITFTNKAAAEMRERLGALI 217 >gi|260654704|ref|ZP_05860194.1| UvrD/REP helicase family protein [Jonquetella anthropi E3_33 E1] gi|260630720|gb|EEX48914.1| UvrD/REP helicase family protein [Jonquetella anthropi E3_33 E1] Length = 1181 Score = 41.6 bits (96), Expect = 0.087, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 16/120 (13%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A+ R VSA AG+GKT L R L + A ++L LT T+ AA EM R+ + Sbjct: 31 ATSSERLTVVSAGAGTGKTWTLAWRFLWCMAQGAPAPSILTLTFTEKAAEEMRSRIAALT 90 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + + E ++++ +++ R L + + TIH FC ++++ Sbjct: 91 EGVARQAKEAGCVRLSEV---------LNEGRRCLDSAY-------ISTIHGFCLRVIKE 134 >gi|255066057|ref|ZP_05317912.1| DNA helicase II [Neisseria sicca ATCC 29256] gi|255049602|gb|EET45066.1| DNA helicase II [Neisseria sicca ATCC 29256] Length = 736 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|229097011|ref|ZP_04227979.1| UvrD/REP helicase [Bacillus cereus Rock3-29] gi|228686407|gb|EEL40317.1| UvrD/REP helicase [Bacillus cereus Rock3-29] Length = 1028 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 33/171 (19%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 T + ++A AG+GKT++++ R+ LL ++ +T T A+ EM R Sbjct: 316 TDNLMITAGAGTGKTYVMIDRIFYLLEKVGITLKDIIMVTFTNASTNEMKER-------- 367 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 L ++LS + K+ G K ++L E +++ TIHAF ++I+ Q Sbjct: 368 --LQKKLLS--MFKLTG---------KTKYLYFA--EEVKNIQISTIHAFSKSILTQLAH 412 Query: 150 EANITSHFAIADEEQSK-----KLIEEAKKSTLASIMLDNNEELKKAFYEI 195 E + + ++K KL E + A +++D L FYE+ Sbjct: 413 EIGFGRNLKVRSFIKTKSDILEKLANEFFQKHPAKVLVD----LNLKFYEV 459 >gi|171059448|ref|YP_001791797.1| UvrD/REP helicase [Leptothrix cholodnii SP-6] gi|170776893|gb|ACB35032.1| UvrD/REP helicase [Leptothrix cholodnii SP-6] Length = 848 Score = 41.6 bits (96), Expect = 0.087, Method: Composition-based stats. Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 4/58 (6%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 LA++P A + A AGSGKT +L R+ LL P L+ +T T AA EM HR+ Sbjct: 62 LAAEP---ALILAGAGSGKTRVLTTRIAWLLQTGQIGPGGLMAVTFTNKAAKEMVHRL 116 >gi|194466913|ref|ZP_03072900.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri 100-23] gi|194453949|gb|EDX42846.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri 100-23] Length = 757 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 11/100 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEI--------- 85 V A AGSGKT +L RV L+ N P +L +T T AA EM RV ++ Sbjct: 28 VMAGAGSGKTRVLTHRVAYLIEENGVLPWNILAITFTNKAAREMKERVGKLLGESANEIW 87 Query: 86 ITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITI 124 ++ + L IL +I KI + +D S+ R L+ I Sbjct: 88 VSTFHALCVRILRRDIEKIGYNRAFTIADTSEQRTLMKRI 127 >gi|319778234|ref|YP_004129147.1| ATP-dependent DNA helicase UvrD/PcrA [Taylorella equigenitalis MCE9] gi|317108258|gb|ADU91004.1| ATP-dependent DNA helicase UvrD/PcrA [Taylorella equigenitalis MCE9] Length = 735 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 57/152 (37%), Gaps = 43/152 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ A P +L +T T AA EM R+ + I Sbjct: 26 VLAGAGSGKTKVLTTRIAWLVQQGIATPERILAVTFTNKAAKEMMERIGKYIPV------ 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P L V T H+ C I++ E + Sbjct: 80 --------------------------------NPKSLWVGTFHSICHRILRAHHKEVGLP 107 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + F I D K ++ K L S+ LD+++ Sbjct: 108 AAFQILDMADQKSML----KRILKSMKLDDDK 135 >gi|239816452|ref|YP_002945362.1| pyridoxal-5'-phosphate-dependent protein subunit beta [Variovorax paradoxus S110] gi|239803029|gb|ACS20096.1| Pyridoxal-5'-phosphate-dependent protein beta subunit [Variovorax paradoxus S110] Length = 358 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 34/169 (20%), Positives = 71/169 (42%), Gaps = 21/169 (12%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 AW+ AG+G T + R LR + T +C+ + + + +A+ Sbjct: 191 AWIVVGAGTGGTSATIGRYLRYRCHD----TQVCVPDPEGS----------VFSAYHRSG 236 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP--LEA 151 D L+A ++I+G + + S R L+ ++E P V +HA + ++ Sbjct: 237 DATLTAAGSRIEGIGRPRVEPSFIRSLVDRMIEVPNLDSVAAMHALSALLGRKVGPSTGT 296 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 N AIA E ++ ++ ++ S++ D E ++++ + N Sbjct: 297 NFVGMLAIAGEMRAA-----GRQGSILSLLCDAGERYLPSYHDAAWVQN 340 >gi|15605371|ref|NP_220157.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis D/UW-3/CX] gi|237803068|ref|YP_002888262.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis B/Jali20/OT] gi|237804989|ref|YP_002889143.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis B/TZ1A828/OT] gi|255311463|ref|ZP_05354033.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 6276] gi|255317764|ref|ZP_05359010.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 6276s] gi|255349024|ref|ZP_05381031.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 70] gi|255503563|ref|ZP_05381953.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 70s] gi|8134452|sp|O84645|EX5B_CHLTR RecName: Full=Exodeoxyribonuclease V beta chain gi|3329087|gb|AAC68243.1| Exodeoxyribonuclease V, Beta [Chlamydia trachomatis D/UW-3/CX] gi|231273289|emb|CAX10204.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis B/TZ1A828/OT] gi|231274302|emb|CAX11097.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis B/Jali20/OT] gi|296437105|gb|ADH19275.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis G/11222] gi|297748769|gb|ADI51315.1| Exodeoxyribonuclease V beta chain [Chlamydia trachomatis D-EC] gi|297749649|gb|ADI52327.1| Exodeoxyribonuclease V beta chain [Chlamydia trachomatis D-LC] Length = 1026 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 8/120 (6%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVLEIITAWSHL 92 ++ A+AG+GKT + Q VLR LL + T +L +T T AA E+ R+ + L Sbjct: 18 FLEASAGTGKTFTIEQVVLRSLLEGSIEQTKNILVVTFTNAATNELKLRIQASLKQALSL 77 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITI---LETPGGLKVQTIHAFCEAIMQQ-FP 148 + LS T + S +K + L + I L T + + TIH FC ++Q FP Sbjct: 78 FSQALSHPGTPLPPYI--SSSETKVKQLYMKIRNSLATLDEMNIFTIHGFCRFTLEQHFP 135 >gi|121603267|ref|YP_980596.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2] gi|120592236|gb|ABM35675.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2] Length = 709 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ ++ RL+ P + +T T AAAEM R +I Sbjct: 31 VLAGAGSGKTRVITHKIGRLIQMGMKPEQIAAITFTNKAAAEMRERAKSLI 81 >gi|75762299|ref|ZP_00742182.1| ATP-dependent DNA helicase , uvrD-rep family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490222|gb|EAO53555.1| ATP-dependent DNA helicase , uvrD-rep family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 688 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKQVHPRNILLLTFTQKAAEEIRSRV 115 >gi|253568515|ref|ZP_04845926.1| ATP-dependent DNA helicase [Bacteroides sp. 1_1_6] gi|251842588|gb|EES70668.1| ATP-dependent DNA helicase [Bacteroides sp. 1_1_6] Length = 788 Score = 41.6 bits (96), Expect = 0.088, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 50/139 (35%), Gaps = 37/139 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT +L ++ LL P +L LT T AA EM R+ Sbjct: 26 VIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAAREMKERI------------- 72 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + M +AR+L + T H+ I++ TS Sbjct: 73 -------------ARQVGMERARYLWMG-----------TFHSVFSRILRAEAKYIGFTS 108 Query: 156 HFAIADEEQSKKLIEEAKK 174 F I D SK LI K Sbjct: 109 QFTIYDSADSKSLIRSIIK 127 >gi|152992778|ref|YP_001358499.1| ATP-dependent DNA helicase UvrD [Sulfurovum sp. NBC37-1] gi|151424639|dbj|BAF72142.1| ATP-dependent DNA helicase, UvrD/REP family [Sulfurovum sp. NBC37-1] Length = 689 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 17 ISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S +EQL A+ + + A+AG+GKT +V R+ LL PS +L LT T AA Sbjct: 3 LSTLNAEQLSAATASLGQNLIIASAGTGKTSTIVGRIAHLLNEGTDPSKILLLTFTNKAA 62 Query: 76 AEMSHRV 82 EM R+ Sbjct: 63 GEMIARL 69 >gi|67924839|ref|ZP_00518236.1| ATP-dependent DNA helicase PcrA [Crocosphaera watsonii WH 8501] gi|67853326|gb|EAM48688.1| ATP-dependent DNA helicase PcrA [Crocosphaera watsonii WH 8501] Length = 772 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 24/182 (13%) Query: 13 TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70 +++ +SQ Q +A + V A AGSGKT L R+ L+ P ++L +T Sbjct: 4 SVNFLSQLNPSQRIAVEHFCGPLLVVAGAGSGKTRALTYRIAHLITHYQVDPESILAVTF 63 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETP 128 T AA EM R+ + + + E+ Q +P S + + R L +T Sbjct: 64 TNKAAREMKDRL-----------ERLFAQEMALKQQGQPFNSLPEYDQKRLLSQVYKKTT 112 Query: 129 GGLKVQTIHAFCEAIMQ------QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 L + T H+ C I++ Q + +F+I DE + L+ K L L Sbjct: 113 KKLWIGTFHSLCARILRYDVNKYQDEKKRQWERNFSIFDESDVQSLV---KNIVLKQFNL 169 Query: 183 DN 184 D+ Sbjct: 170 DD 171 >gi|332177326|gb|AEE13016.1| UvrD/REP helicase [Porphyromonas asaccharolytica DSM 20707] Length = 789 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 54/141 (38%), Gaps = 37/141 (26%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 A V A AGSGKT ++ ++ L+ +P L LT T AA EM RV ++ L Sbjct: 22 ALVIAGAGSGKTRVITYKLAHLVDQGWNPQRLYALTFTNKAAGEMRSRVSDM------LG 75 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + I L++ T HA C I++++ Sbjct: 76 ESIAYR-------------------------------LRMGTFHAICGRILRRYAPLLGY 104 Query: 154 TSHFAIADEEQSKKLIEEAKK 174 + ++I D +K LI K Sbjct: 105 SQDYSIYDTSDTKALIRNCIK 125 >gi|304408643|ref|ZP_07390264.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS183] gi|307305472|ref|ZP_07585220.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica BA175] gi|304352464|gb|EFM16861.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS183] gi|306911775|gb|EFN42200.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica BA175] Length = 1273 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 10/140 (7%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87 S + A+AG+GKT+ + LRLLL + + L C +T T AA E+ R+ I Sbjct: 29 SRLIEASAGTGKTYTISGLYLRLLLGDGIAAPLTCEQILVVTFTNAATEELRDRIRRRIQ 88 Query: 88 AW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 L I + + P +S+ + A L++ + TIH FC+ I+ Sbjct: 89 VAFKCFLGLTIADPFVQALYDNTP-ESERAIALRRFDLALKSLDEAAIFTIHGFCQRILS 147 Query: 146 QFPLEANI--TSHFAIADEE 163 E+++ S F + D E Sbjct: 148 DLAFESSLLFESDFTLDDSE 167 >gi|300697919|ref|YP_003748580.1| atp-dependent dna helicase II protein (uvrD) [Ralstonia solanacearum CFBP2957] gi|299074643|emb|CBJ54200.1| putative atp-dependent dna helicase II protein (uvrD) [Ralstonia solanacearum CFBP2957] Length = 710 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 53/134 (39%), Gaps = 22/134 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT L RV L+ A P +L LT ++ AA+E+S R ++ Sbjct: 45 VLAGAGSGKTQTLGWRVAHLVAHGADPQRILLLTFSRRAASELSSRAGHLLA-------- 96 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +QG N S A T L G T H +++++ + Sbjct: 97 ------RAMQG---NTGTRSAAGTTYQTALPWAG-----TFHGIGARLLREYADRIGLAP 142 Query: 156 HFAIADEEQSKKLI 169 F I D S L+ Sbjct: 143 DFTIHDRSDSADLL 156 >gi|282858133|ref|ZP_06267328.1| ATP-dependent DNA helicase PcrA [Pyramidobacter piscolens W5455] gi|282584055|gb|EFB89428.1| ATP-dependent DNA helicase PcrA [Pyramidobacter piscolens W5455] Length = 658 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT +L ++ L+ A N P +L +T T AA EMS RV +++ Sbjct: 28 VLAGAGSGKTRVLTSKIAWLIAAQNVKPWRVLAVTFTNKAAREMSERVEKLLGG 81 >gi|15618681|ref|NP_224967.1| DNA helicase [Chlamydophila pneumoniae CWL029] gi|15836305|ref|NP_300829.1| DNA helicase [Chlamydophila pneumoniae J138] gi|16752269|ref|NP_445637.1| ATP-dependent helicase PcrA [Chlamydophila pneumoniae AR39] gi|4377080|gb|AAD18910.1| DNA Helicase [Chlamydophila pneumoniae CWL029] gi|7190013|gb|AAF38869.1| ATP-dependent helicase PcrA [Chlamydophila pneumoniae AR39] gi|8979145|dbj|BAA98980.1| DNA helicase [Chlamydophila pneumoniae J138] Length = 639 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 29/54 (53%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 P V A AG+GKT ++ R+L L+ P +L +T T AA E+ R++ Sbjct: 18 PLNPVLVLAGAGAGKTRVVTYRILHLINQGIAPREILAVTFTNKAARELKERIV 71 >gi|126090202|ref|YP_001041683.1| hypothetical protein Sbal_4565 [Shewanella baltica OS155] gi|126174495|ref|YP_001050644.1| exodeoxyribonuclease V subunit beta [Shewanella baltica OS155] gi|125997700|gb|ABN61775.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS155] gi|125999858|gb|ABN63928.1| hypothetical protein Sbal_4565 [Shewanella baltica OS155] Length = 1273 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 10/140 (7%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87 S + A+AG+GKT+ + LRLLL + + L C +T T AA E+ R+ I Sbjct: 29 SRLIEASAGTGKTYTISGLYLRLLLGDGIAAPLTCEQILVVTFTNAATEELRDRIRRRIQ 88 Query: 88 AW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 L I + + P +S+ + A L++ + TIH FC+ I+ Sbjct: 89 VAFKCFLGLTIADPFVQALYDNTP-ESERAIALRRFDLALKSLDEAAIFTIHGFCQRILS 147 Query: 146 QFPLEANI--TSHFAIADEE 163 E+++ S F + D E Sbjct: 148 DLAFESSLLFESDFTLDDSE 167 >gi|329121051|ref|ZP_08249682.1| ATP-dependent DNA helicase PcrA [Dialister micraerophilus DSM 19965] gi|327471213|gb|EGF16667.1| ATP-dependent DNA helicase PcrA [Dialister micraerophilus DSM 19965] Length = 735 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 27/51 (52%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT L R+ +L P +L +T T AA EM RV ++ Sbjct: 25 IMAGAGSGKTKALTCRIAHMLNNGIKPEEILAITFTNKAAQEMKERVQNLV 75 >gi|323142809|ref|ZP_08077522.1| putative ATP-dependent DNA helicase Rep [Succinatimonas hippei YIT 12066] gi|322417454|gb|EFY08075.1| putative ATP-dependent DNA helicase Rep [Succinatimonas hippei YIT 12066] Length = 671 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLC-LTHTKAAAAEMSHRV 82 V A AGSGKT ++ +++ L+ + P+ +C +T T AAAEM RV Sbjct: 20 VLAGAGSGKTRVITAKIVNLITGHKLPAKTVCAVTFTNKAAAEMRERV 67 >gi|313894242|ref|ZP_07827807.1| UvrD/REP helicase [Veillonella sp. oral taxon 158 str. F0412] gi|313441066|gb|EFR59493.1| UvrD/REP helicase [Veillonella sp. oral taxon 158 str. F0412] Length = 862 Score = 41.6 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 74/184 (40%), Gaps = 40/184 (21%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79 + +Q + + ++ + A+AG+GKT+ L RV L+ A +LC+T T AA EM Sbjct: 5 REQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGGYAKAENILCMTFTNKAANEMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ ++ + P K+ +++ T H+F Sbjct: 65 DRIQSLVGS--------------------PAKA------------------VEISTFHSF 86 Query: 140 CEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++QQ + + I DEE K+L E + L + N + K + + Sbjct: 87 CFFVLQQEGKRNETLYTDVTIFDEEDCKELSEPYRPGKLREMSFANIIGMVKEYRSLYGF 146 Query: 199 SNDE 202 +D+ Sbjct: 147 YSDD 150 >gi|313886343|ref|ZP_07820068.1| UvrD/REP helicase [Porphyromonas asaccharolytica PR426713P-I] gi|312924212|gb|EFR34996.1| UvrD/REP helicase [Porphyromonas asaccharolytica PR426713P-I] Length = 785 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 35/141 (24%), Positives = 54/141 (38%), Gaps = 37/141 (26%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 A V A AGSGKT ++ ++ L+ +P L LT T AA EM RV ++ L Sbjct: 22 ALVIAGAGSGKTRVITYKLAHLVDQGWNPQRLYALTFTNKAAGEMRSRVSDM------LG 75 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + I L++ T HA C I++++ Sbjct: 76 ESIAYR-------------------------------LRMGTFHAICGRILRRYAPLLGY 104 Query: 154 TSHFAIADEEQSKKLIEEAKK 174 + ++I D +K LI K Sbjct: 105 SQDYSIYDTSDTKALIRNCIK 125 >gi|242241668|ref|ZP_04796113.1| possible ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis W23144] gi|242234878|gb|EES37189.1| possible ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis W23144] Length = 295 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ SEQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LVKNMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63 Query: 74 AAAEMSHRVLEII 86 AA EM RV ++ Sbjct: 64 AAKEMKTRVEHLV 76 >gi|237709837|ref|ZP_04540318.1| ATP-dependent helicase [Bacteroides sp. 9_1_42FAA] gi|229455930|gb|EEO61651.1| ATP-dependent helicase [Bacteroides sp. 9_1_42FAA] Length = 1058 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 6/126 (4%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95 A+AGSGKT L ++LL+ N +L +T T A EM R+L ++ W + D+ Sbjct: 12 ASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIW--IKDK 69 Query: 96 ILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + + KI + + P + + A L ++ +V+TI +F +++M+ E + Sbjct: 70 DSNPYLQKITEELEMPPEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLARELEL 129 Query: 154 TSHFAI 159 ++ I Sbjct: 130 GANLNI 135 >gi|163794460|ref|ZP_02188431.1| UvrD/REP helicase [alpha proteobacterium BAL199] gi|159180184|gb|EDP64707.1| UvrD/REP helicase [alpha proteobacterium BAL199] Length = 798 Score = 41.6 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ LL L A P +L +T T A+ EM RV I+ Sbjct: 52 VLAGAGTGKTRVLTTRLAHLLALGKARPWNVLAVTFTNRASREMKERVARIV 103 >gi|157149814|ref|YP_001450693.1| first chain of major exonuclease RexA [Streptococcus gordonii str. Challis substr. CH1] gi|251764541|sp|A8AY33|ADDA_STRGC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|157074608|gb|ABV09291.1| first chain of major exonuclease RexA [Streptococcus gordonii str. Challis substr. CH1] Length = 1216 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 VSA+AGSGKT ++VQR++ +L L T T AA E+ R+ Sbjct: 45 VSASAGSGKTFVMVQRIIDQILRGVSIQELFISTFTVKAAGELKERL 91 >gi|51893634|ref|YP_076325.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863] gi|51857323|dbj|BAD41481.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863] Length = 671 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 28/53 (52%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AG+GKT R+ LL P ++C+T T AA EM R + ++ A Sbjct: 28 VIAGAGAGKTRTATHRLACLLARGVPPEAVMCITFTNKAAREMRDRAVALVGA 80 >gi|319952833|ref|YP_004164100.1| uvrd/rep helicase [Cellulophaga algicola DSM 14237] gi|319421493|gb|ADV48602.1| UvrD/REP helicase [Cellulophaga algicola DSM 14237] Length = 1041 Score = 41.6 bits (96), Expect = 0.090, Method: Compositional matrix adjust. Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 6/129 (4%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHL- 92 +A+AGSGKT+ L + L+++L++A + +L +T T A AEM R+++ + + + Sbjct: 10 NASAGSGKTYTLTKSYLKIILSSATSANYREILAITFTNKAVAEMKERIIDSLYDFGKVK 69 Query: 93 -SDEILSAEITKIQGKKPNKSDMSK-ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 +D S + ++ + + K A+ L IL V TI F +++ F + Sbjct: 70 TADHAPSMFLDLVKELHIDVETLQKRAKTRLKEILHNYAFFDVSTIDKFTHRLIRTFAKD 129 Query: 151 ANITSHFAI 159 + +F + Sbjct: 130 LKLPQNFEV 138 >gi|317165456|gb|ADV08997.1| hypothetical protein NGTW08_2046 [Neisseria gonorrhoeae TCDC-NG08107] Length = 735 Score = 41.6 bits (96), Expect = 0.090, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|322418722|ref|YP_004197945.1| UvrD/REP helicase [Geobacter sp. M18] gi|320125109|gb|ADW12669.1| UvrD/REP helicase [Geobacter sp. M18] Length = 678 Score = 41.6 bits (96), Expect = 0.090, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 2/68 (2%) Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAA 74 +S+ EQL A T A V A AGSGKT ++ R+ L+L P+ +L +T T A Sbjct: 4 LSRLNPEQLAAVKHTEGALLVLAGAGSGKTGVITYRIAHLILNKKVPADRVLAVTFTNKA 63 Query: 75 AAEMSHRV 82 + EM RV Sbjct: 64 SKEMKERV 71 >gi|300775551|ref|ZP_07085412.1| ATP-dependent DNA helicase PcrA [Chryseobacterium gleum ATCC 35910] gi|300505578|gb|EFK36715.1| ATP-dependent DNA helicase PcrA [Chryseobacterium gleum ATCC 35910] Length = 776 Score = 41.6 bits (96), Expect = 0.090, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ P +L LT T AA EM R+ +++ Sbjct: 24 VLAGAGSGKTRVLTMRIAHLIHNGIDPFNILALTFTNKAAREMKDRIAKVV 74 >gi|148544658|ref|YP_001272028.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri DSM 20016] gi|184154011|ref|YP_001842352.1| ATP-dependent DNA helicase [Lactobacillus reuteri JCM 1112] gi|227363781|ref|ZP_03847888.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM2-3] gi|325682992|ref|ZP_08162508.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM4-1A] gi|148531692|gb|ABQ83691.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri DSM 20016] gi|183225355|dbj|BAG25872.1| ATP-dependent DNA helicase [Lactobacillus reuteri JCM 1112] gi|227071138|gb|EEI09454.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM2-3] gi|324977342|gb|EGC14293.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM4-1A] Length = 757 Score = 41.6 bits (96), Expect = 0.090, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 11/100 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEI--------- 85 V A AGSGKT +L RV L+ N P +L +T T AA EM RV ++ Sbjct: 28 VMAGAGSGKTRVLTHRVAYLIEENGVLPWNILAITFTNKAAREMKERVGKLLGESANEIW 87 Query: 86 ITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITI 124 ++ + L IL +I KI + +D S+ R L+ I Sbjct: 88 VSTFHALCVRILRRDIEKIGYNRAFTIADTSEQRTLMKRI 127 >gi|326801224|ref|YP_004319043.1| UvrD/REP helicase [Sphingobacterium sp. 21] gi|326551988|gb|ADZ80373.1| UvrD/REP helicase [Sphingobacterium sp. 21] Length = 729 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 V A AG+GKT ++ +V L+ P+ +L LT T+ +A EM +RV +++ A S Sbjct: 117 VIAGAGTGKTRVITYKVSYLIEKGFEPNEILLLTFTRKSANEMLNRVQKLLHAKS 171 >gi|297622299|ref|YP_003703733.1| UvrD/REP helicase [Truepera radiovictrix DSM 17093] gi|297163479|gb|ADI13190.1| UvrD/REP helicase [Truepera radiovictrix DSM 17093] Length = 1106 Score = 41.6 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L++ EQ A++ + A V A AGSGKT +V R+ L+ A+ +P+ +L +T T Sbjct: 10 LLAVLNEEQRAAAEHFQGPALVLAGAGSGKTRTVVHRIAYLMDAHEVYPTEILAVTFTNK 69 Query: 74 AAAEMSHRVLEII 86 AA E+ RV ++ Sbjct: 70 AAGELKERVAHLM 82 >gi|297571780|ref|YP_003697554.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595] gi|296932127|gb|ADH92935.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595] Length = 1156 Score = 41.6 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 19/175 (10%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPST 64 +F + T D + ++ SD ++ V A AGSGKT + R+ LL + A P+ Sbjct: 2 NFADFVGTTDFPPTDEQAAVITSD-HQATLVIAGAGSGKTATMANRIAWLLASGKAQPNH 60 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT--KIQGKKPNKSDMSKARHLLI 122 +L LT T+ AA E++ RV + I + S+ +T I + K+ ++ A H Sbjct: 61 ILGLTFTRKAAGELAERVNKKIREITRRGIYTPSSMLTDGNIGDGEEGKNQIASAVH--- 117 Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 +T + T ++F I TS+ + E+ +L+ EA++ L Sbjct: 118 ---DTLSRPTISTYNSFASQIA---------TSYAMLIGEDPGARLMSEAERYQL 160 >gi|294671393|ref|ZP_06736243.1| hypothetical protein NEIELOOT_03101 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291306941|gb|EFE48184.1| hypothetical protein NEIELOOT_03101 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 735 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|237794676|ref|YP_002862228.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum Ba4 str. 657] gi|229260614|gb|ACQ51647.1| helicase, UvrD/REP/exonuclease family protein [Clostridium botulinum Ba4 str. 657] Length = 855 Score = 41.6 bits (96), Expect = 0.091, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 44/138 (31%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 ++AG+GKT L R+ ++ N A +LCLT T A EM +++E + Sbjct: 25 SSAGTGKTKTLSMRIGNIIAKNLALGEQILCLTFTNRACKEMKEKIIETV---------- 74 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIHAFC-EAIMQQFPLEANI 153 GK+ GLK V+T H+FC + I ++ +I Sbjct: 75 ---------GKE---------------------GLKVTVKTFHSFCFDVIKKEAKKNTDI 104 Query: 154 TSHFAIADEEQSKKLIEE 171 + F I DEE +K++I E Sbjct: 105 SFDFTIYDEEDTKEIISE 122 >gi|212692987|ref|ZP_03301115.1| hypothetical protein BACDOR_02488 [Bacteroides dorei DSM 17855] gi|237725615|ref|ZP_04556096.1| conserved hypothetical protein [Bacteroides sp. D4] gi|212664456|gb|EEB25028.1| hypothetical protein BACDOR_02488 [Bacteroides dorei DSM 17855] gi|229436302|gb|EEO46379.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 796 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L ++ LL P ++L LT T AA EM R+ Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLEQGYTPWSILALTFTNKAAREMKERI 71 >gi|153000571|ref|YP_001366252.1| exodeoxyribonuclease V subunit beta [Shewanella baltica OS185] gi|151365189|gb|ABS08189.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS185] Length = 1273 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 10/140 (7%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87 S + A+AG+GKT+ + LRLLL + + L C +T T AA E+ R+ I Sbjct: 29 SRLIEASAGTGKTYTISGLYLRLLLGDGIAAPLTCEQILVVTFTNAATEELRDRIRRRIQ 88 Query: 88 AW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 L I + + P +S+ + A L++ + TIH FC+ I+ Sbjct: 89 VAFKCFLGLTIADPFVQALYDNTP-ESERAIALRRFDLALKSLDEAAIFTIHGFCQRILS 147 Query: 146 QFPLEANI--TSHFAIADEE 163 E+++ S F + D E Sbjct: 148 DLAFESSLLFESDFTLDDSE 167 >gi|296436177|gb|ADH18351.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis G/9768] gi|296438037|gb|ADH20198.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis G/11074] gi|297140539|gb|ADH97297.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis G/9301] Length = 1026 Score = 41.6 bits (96), Expect = 0.092, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 8/120 (6%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVLEIITAWSHL 92 ++ A+AG+GKT + Q VLR LL + T +L +T T AA E+ R+ + L Sbjct: 18 FLEASAGTGKTFTIEQVVLRSLLEGSIEQTKNILVVTFTNAATNELKLRIQASLKQALSL 77 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITI---LETPGGLKVQTIHAFCEAIMQQ-FP 148 + LS T + S +K + L + I L T + + TIH FC ++Q FP Sbjct: 78 FSQALSHPGTPLPPYI--SSSETKVKQLYMKIRNSLATLDEMNIFTIHGFCRFTLEQHFP 135 >gi|295133070|ref|YP_003583746.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Zunongwangia profunda SM-A87] gi|294981085|gb|ADF51550.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Zunongwangia profunda SM-A87] Length = 773 Score = 41.6 bits (96), Expect = 0.092, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ ++ +L LT T AA EM HR+ +I+ Sbjct: 25 VIAGAGSGKTRVLTYRIAYMMSKGIDAFNILALTFTNKAAREMQHRISQIV 75 >gi|288959583|ref|YP_003449924.1| uvrD/REP helicase [Azospirillum sp. B510] gi|288911891|dbj|BAI73380.1| uvrD/REP helicase [Azospirillum sp. B510] Length = 1054 Score = 41.6 bits (96), Expect = 0.093, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 29/47 (61%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V+A+AG+GKTH L + L + A P +L T T+ AAAE+ R+ Sbjct: 13 VTASAGTGKTHRLTRAYLDAVAAGTAPEAILATTFTRKAAAELLERI 59 >gi|225012823|ref|ZP_03703257.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A] gi|225003097|gb|EEG41073.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A] Length = 775 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ + ++L LT T AA EM R+ ++ Sbjct: 29 VIAGAGSGKTRVLTYRIAHLMASGVDSFSILALTFTNKAAREMKARIGALV 79 >gi|160875207|ref|YP_001554523.1| exodeoxyribonuclease V subunit beta [Shewanella baltica OS195] gi|160860729|gb|ABX49263.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS195] gi|315267400|gb|ADT94253.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS678] Length = 1273 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 10/140 (7%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87 S + A+AG+GKT+ + LRLLL + + L C +T T AA E+ R+ I Sbjct: 29 SRLIEASAGTGKTYTISGLYLRLLLGDGIAAPLTCEQILVVTFTNAATEELRDRIRRRIQ 88 Query: 88 AW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 L I + + P +S+ + A L++ + TIH FC+ I+ Sbjct: 89 VAFKCFLGLTIADPFVQALYDNTP-ESERAIALRRFDLALKSLDEAAIFTIHGFCQRILS 147 Query: 146 QFPLEANI--TSHFAIADEE 163 E+++ S F + D E Sbjct: 148 DLAFESSLLFESDFTLDDSE 167 >gi|76789378|ref|YP_328464.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis A/HAR-13] gi|76167908|gb|AAX50916.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis A/HAR-13] Length = 1026 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 8/120 (6%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVLEIITAWSHL 92 ++ A+AG+GKT + Q VLR LL + T +L +T T AA E+ R+ + L Sbjct: 18 FLEASAGTGKTFTIEQVVLRSLLEGSIEQTKNILVVTFTNAATNELKLRIQASLKQALSL 77 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITI---LETPGGLKVQTIHAFCEAIMQQ-FP 148 + LS T + S +K + L + I L T + + TIH FC ++Q FP Sbjct: 78 FSQALSHPGTPLPPYI--SSSETKVKQLYMKIRNSLATLDEMNIFTIHGFCRFTLEQHFP 135 >gi|326390898|ref|ZP_08212449.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter ethanolicus JW 200] gi|325993046|gb|EGD51487.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter ethanolicus JW 200] Length = 711 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 51/138 (36%), Gaps = 40/138 (28%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT +L R+ L+ PS +L +T T AA EM RV + Sbjct: 27 AGAGSGKTRVLTHRIAYLIKEKKVSPSNILAITFTNKAAEEMKTRVED------------ 74 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 +L G L V T H+ C I+++ + + Sbjct: 75 ---------------------------LLGYIGDLWVSTFHSACVRILRRDIDKIGYDRN 107 Query: 157 FAIADEEQSKKLIEEAKK 174 F I D K LI+E K Sbjct: 108 FVIFDTTDQKALIQECLK 125 >gi|313891747|ref|ZP_07825352.1| putative ATP-dependent DNA helicase PcrA [Dialister microaerophilus UPII 345-E] gi|313119741|gb|EFR42928.1| putative ATP-dependent DNA helicase PcrA [Dialister microaerophilus UPII 345-E] Length = 735 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 27/51 (52%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT L R+ +L P +L +T T AA EM RV ++ Sbjct: 25 IMAGAGSGKTKALTCRIAHMLNNGIKPEEILAITFTNKAAQEMKERVQNLV 75 >gi|308389552|gb|ADO31872.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha710] Length = 671 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72 >gi|296314222|ref|ZP_06864163.1| ATP-dependent DNA helicase Rep [Neisseria polysaccharea ATCC 43768] gi|296839123|gb|EFH23061.1| ATP-dependent DNA helicase Rep [Neisseria polysaccharea ATCC 43768] Length = 671 Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72 >gi|296127434|ref|YP_003634686.1| Exodeoxyribonuclease V [Brachyspira murdochii DSM 12563] gi|296019250|gb|ADG72487.1| Exodeoxyribonuclease V [Brachyspira murdochii DSM 12563] Length = 1124 Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 32/49 (65%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 +V+A+AG+GKT + + ++LL S+++ +T TKAAA EM R+ Sbjct: 22 CFVNASAGTGKTSTITELYIKLLENREKVSSIVVITFTKAAANEMLLRI 70 >gi|241890126|ref|ZP_04777424.1| ATP-dependent helicase PcrA [Gemella haemolysans ATCC 10379] gi|241863748|gb|EER68132.1| ATP-dependent helicase PcrA [Gemella haemolysans ATCC 10379] Length = 727 Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 14 IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71 ++L+ QL A T A V A AGSGKT +L R+ L+ N + +L +T T Sbjct: 1 MNLVQNMNDNQLKAILKTEGAVMVIAGAGSGKTRVLTNRIAYLISEKNILENNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWS 90 AA EM R+ ++ S Sbjct: 61 NKAAKEMKERIYALVGETS 79 >gi|288801211|ref|ZP_06406666.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 299 str. F0039] gi|288331822|gb|EFC70305.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 299 str. F0039] Length = 803 Score = 41.6 bits (96), Expect = 0.095, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 V A AGSGKT +L ++ L+ P ++L LT T AA EM R+ ++ S Sbjct: 24 VIAGAGSGKTRVLTYKIAYLIEKGFMPWSILALTFTNKAANEMKERIATLVGEQS 78 >gi|28572258|ref|NP_789038.1| ATP-dependent DNA helicase [Tropheryma whipplei TW08/27] gi|28410389|emb|CAD66775.1| ATP-dependent DNA helicase [Tropheryma whipplei TW08/27] Length = 743 Score = 41.6 bits (96), Expect = 0.095, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 +SA AGSGKT +L R+ L A +L +T T AA+EM HR +++ Sbjct: 28 ISAGAGSGKTKVLTHRIAGFLATGEASCDQILAITFTNKAASEMRHRTGDLV 79 >gi|15602276|ref|NP_245348.1| DNA-dependent helicase II [Pasteurella multocida subsp. multocida str. Pm70] gi|12720662|gb|AAK02495.1| UvrD [Pasteurella multocida subsp. multocida str. Pm70] Length = 726 Score = 41.6 bits (96), Expect = 0.095, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 35/133 (26%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +L R+ L+ + +++ +T T AAAEM HR+ + Sbjct: 21 PLGNYLVLAGAGSGKTRVLTHRIAWLIAVEQVSEGSIMAVTFTNKAAAEMRHRIESTLA- 79 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +H S + G+ V T H+ +++ Sbjct: 80 -NHASQRLF--------------------------------GMWVGTFHSIAHRLLRAHH 106 Query: 149 LEANITSHFAIAD 161 L+AN+ F I D Sbjct: 107 LDANLPQDFQILD 119 >gi|325142627|gb|EGC65018.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis 961-5945] Length = 671 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 49/187 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKMLPK------ 74 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 S+ R GL + T H+ I+++ Sbjct: 75 --------------------SQTR-----------GLTICTFHSLGMKILREEANHIGYK 103 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND----EDIETLISD 210 +F+I D S K+I E T E + KA ++I ND ED+ S+ Sbjct: 104 KNFSILDSTDSAKIIGELLGGT-------GKEAVFKAQHQISLWKNDLKTPEDVVQTASN 156 Query: 211 IISNRTA 217 I +TA Sbjct: 157 IWEQQTA 163 >gi|21226292|ref|NP_632214.1| DNA helicase II [Methanosarcina mazei Go1] gi|20904537|gb|AAM29886.1| DNA helicase II [Methanosarcina mazei Go1] Length = 908 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 40/125 (32%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AG+GKT L ++++ LLL N P++++ T T+ AA M RV + + L E Sbjct: 36 AGAGAGKTETLTRKIVCLLLYENVKPASIVAFTFTEKAAQGMKSRVYDRV---RQLGGEE 92 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 + A++ G + + TIH +C +++ +H Sbjct: 93 ICAKL---------------------------GEMYIGTIHGYCSFLLE---------NH 116 Query: 157 FAIAD 161 F D Sbjct: 117 FKFGD 121 >gi|152974753|ref|YP_001374270.1| UvrD/REP helicase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023505|gb|ABS21275.1| UvrD/REP helicase [Bacillus cytotoxicus NVH 391-98] Length = 684 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L RV L+ + HP +L LT T+ AA E+ RV Sbjct: 70 AGAGSGKTSVLTTRVGYLVNVKKVHPRNILLLTFTQKAAEEIRSRV 115 >gi|322391963|ref|ZP_08065427.1| exonuclease RexA [Streptococcus peroris ATCC 700780] gi|321145189|gb|EFX40586.1| exonuclease RexA [Streptococcus peroris ATCC 700780] Length = 1215 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 19/135 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L L T T AA E+ R+ ++ Sbjct: 42 VSASAGSGKTFVMAERILDQLARGVEIRQLFISTFTVKAATELKERL-----------EK 90 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +S +I + Q D+ +HL + + P + T+ +F + + + N++ Sbjct: 91 KISQQIQETQ-------DLELKKHLGRQLADLPNA-AIGTMDSFTQKFLTKHGYLLNLSP 142 Query: 156 HFAIADEEQSKKLIE 170 +F I + E + L++ Sbjct: 143 NFRILENESEQLLLK 157 >gi|168492513|ref|ZP_02716656.1| recombination helicase AddA [Streptococcus pneumoniae CDC0288-04] gi|183573318|gb|EDT93846.1| recombination helicase AddA [Streptococcus pneumoniae CDC0288-04] Length = 1216 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 7/92 (7%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64 NS +E +T D I E + S ++ VSA+AGSGKT ++ +R+L L S Sbjct: 21 NSSKEQKKTTDQI-----EAIYTS--GQNILVSASAGSGKTFVMAERILNQLARGVEISQ 73 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 L T T AA E+ R+ + I+ +D++ Sbjct: 74 LFISTFTVKAATELKERLEKKISKKIQETDDV 105 >gi|28493047|ref|NP_787208.1| ATP-dependent DNA helicase [Tropheryma whipplei str. Twist] gi|28476087|gb|AAO44177.1| ATP-dependent DNA helicase [Tropheryma whipplei str. Twist] Length = 743 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 +SA AGSGKT +L R+ L A +L +T T AA+EM HR +++ Sbjct: 28 ISAGAGSGKTKVLTHRIAGFLATGEASCDQILAITFTNKAASEMRHRTGDLV 79 >gi|167038090|ref|YP_001665668.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116497|ref|YP_004186656.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856924|gb|ABY95332.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929588|gb|ADV80273.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 711 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A AGSGKT +L R+ L+ PS +L +T T AA EM RV +++ L Sbjct: 27 AGAGSGKTRVLTHRIAYLIKEKKVSPSNILAITFTNKAAEEMKTRVEDLLGYIGDL 82 >gi|319942765|ref|ZP_08017069.1| superfamily I DNA and RNA helicase [Sutterella wadsworthensis 3_1_45B] gi|319803645|gb|EFW00595.1| superfamily I DNA and RNA helicase [Sutterella wadsworthensis 3_1_45B] Length = 816 Score = 41.6 bits (96), Expect = 0.097, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 64/163 (39%), Gaps = 40/163 (24%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D+++ EQ A + P S + A AGSGKT +L R+ LL N A +L +T T Sbjct: 4 DILANLNPEQHRAVTAPEESVLILAGAGSGKTRVLTTRIAWLLEHNLATTGEILAVTFTN 63 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM +T+++G P D+ + + Sbjct: 64 KAAKEM----------------------LTRLEGMIP--YDLRR--------------MW 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V T H C I++ EA + F I D L++ K+ Sbjct: 86 VGTFHGLCNRILRIHAQEAGLPKTFQILDSGDQLSLVKRLMKA 128 >gi|302336244|ref|YP_003801451.1| UvrD/REP helicase [Olsenella uli DSM 7084] gi|301320084|gb|ADK68571.1| UvrD/REP helicase [Olsenella uli DSM 7084] Length = 879 Score = 41.6 bits (96), Expect = 0.097, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 68/175 (38%), Gaps = 49/175 (28%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71 T+DL +++ A V A AGSGKT +L R+ ++ P +L +T T Sbjct: 35 TVDLSGLNPAQRKAAETTHGPLLVLAGAGSGKTRVLTYRIAHMIADEGVRPWQVLAITFT 94 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM R+ ++ PGG Sbjct: 95 NKAAAEMRERLGALL-----------------------------------------PGGT 113 Query: 132 K---VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 + V T HA C ++++ +F I D++ S++L+ KS +A + +D Sbjct: 114 RGMWVCTFHAMCVRMLREDGELLGYQPNFTIYDDDDSRRLV----KSIMADLDID 164 >gi|255507242|ref|ZP_05382881.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis D(s)2923] gi|289525682|emb|CBJ15163.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis Sweden2] gi|296435250|gb|ADH17428.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis E/150] gi|296438969|gb|ADH21122.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis E/11023] Length = 1026 Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 8/120 (6%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVLEIITAWSHL 92 ++ A+AG+GKT + Q VLR LL T +L +T T AA E+ R+ + L Sbjct: 18 FLEASAGTGKTFTIEQVVLRSLLEGPIEQTKNILVVTFTNAATNELKLRIQASLKQALSL 77 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITI---LETPGGLKVQTIHAFCEAIMQQ-FP 148 + LS T + S +K + L + I L T + + TIH FC ++Q FP Sbjct: 78 FSQALSHPGTPLPPYI--SSSETKVKQLYMKIRNSLATLDEMNIFTIHGFCRFTLEQHFP 135 >gi|196228173|ref|ZP_03127040.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428] gi|196227576|gb|EDY22079.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428] Length = 678 Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 37/134 (27%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A AG+GKT ++ RV L+ PS +L +T T AA EM R+ ++I Sbjct: 28 AGAGTGKTRVITMRVAFLISQGVDPSHILAVTFTNKAADEMRERLAKMI----------- 76 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157 + S+A+ + ++ T HA C I++Q + +F Sbjct: 77 ---------------EPSQAKKVTMS-----------TFHALCVRILRQDIEKLGWKKNF 110 Query: 158 AIADEEQSKKLIEE 171 +I DE LI++ Sbjct: 111 SIYDEGDQMGLIKK 124 >gi|40063254|gb|AAR38081.1| DNA helicase II [uncultured marine bacterium 577] Length = 749 Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 L+S +EQL A + +SA V A AGSGKT +L R+ L+ + P ++L +T T Sbjct: 4 LLSSLNNEQLKAVTLQDQSALVLAGAGSGKTRVLTTRIAYLIQSRQVSPHSILAVTFTNK 63 Query: 74 AAAEMSHRV 82 AA EM RV Sbjct: 64 AAKEMLMRV 72 >gi|319411282|emb|CBY91690.1| DNA helicase II [Neisseria meningitidis WUE 2594] Length = 735 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|261392291|emb|CAX49817.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis 8013] gi|325134572|gb|EGC57216.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M13399] Length = 671 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72 >gi|260890362|ref|ZP_05901625.1| putative ATP-dependent nuclease subunit A [Leptotrichia hofstadii F0254] gi|260859982|gb|EEX74482.1| putative ATP-dependent nuclease subunit A [Leptotrichia hofstadii F0254] Length = 638 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 37/159 (23%), Positives = 75/159 (47%), Gaps = 11/159 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AG+GKT+ L + L+ + ++ +T TK A AE+ R+ + + + D+ Sbjct: 7 LKASAGTGKTYRLSLEFIANLVRGVNYKNIVVMTFTKKATAEIKERIFDFLYQIAF--DK 64 Query: 96 ILSAEITKIQGKKPNKSDMSKA--RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 AE+ K + +++K +++ +++ +++ TI F I + I Sbjct: 65 GNGAELEKNLKEIYKFDNLNKKELQNIYFEMIKNKEDIRISTIDRFTNQIFKN-----AI 119 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 T +F I + E +K +E L I+ NEE+ + F Sbjct: 120 TPYFNIYNYEIFEKETDEFYSKVLIKII--ENEEIFQKF 156 >gi|253582808|ref|ZP_04860028.1| UvrD/REP helicase [Fusobacterium varium ATCC 27725] gi|251835384|gb|EES63925.1| UvrD/REP helicase [Fusobacterium varium ATCC 27725] Length = 617 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 S I+ + EQL A + V A AGSGKT +V R ++ +L L Sbjct: 23 ESYKINYCKELNEEQLRALTSLEGQYLVIAGAGSGKTRTIVYRTAFMIERGIPEKKILML 82 Query: 69 THTKAAAAEMSHRV 82 T TK AA EM R+ Sbjct: 83 TFTKKAALEMEERI 96 >gi|229829221|ref|ZP_04455290.1| hypothetical protein GCWU000342_01308 [Shuttleworthia satelles DSM 14600] gi|229792384|gb|EEP28498.1| hypothetical protein GCWU000342_01308 [Shuttleworthia satelles DSM 14600] Length = 640 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86 A GSGKT ++++RV RL+ P+ +L +T T+ AA EM +R L ++ Sbjct: 26 AGPGSGKTSVIIRRVARLIEERKIPAEQILVITFTREAAMEMQNRFLSVL 75 >gi|237740038|ref|ZP_04570519.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 2_1_31] gi|229422055|gb|EEO37102.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 2_1_31] Length = 735 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 39/145 (26%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85 AS S + A AGSGKT + R+ ++ P ++L +T T AA EM RV Sbjct: 15 ASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVTFTNKAAKEMRERV--- 71 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 E L E+ K + T H+F +++ Sbjct: 72 ---------EDLVGEVAK--------------------------SCTISTFHSFGMRLLR 96 Query: 146 QFPLEANITSHFAIADEEQSKKLIE 170 + E + +F I D + K++I+ Sbjct: 97 MYAAEVGYSPNFTIYDTDDQKRIIK 121 >gi|325144733|gb|EGC67028.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M01-240013] Length = 671 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72 >gi|282858262|ref|ZP_06267448.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010] gi|282588971|gb|EFB94090.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010] Length = 1131 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 8/127 (6%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L + +L+ N + +L +T T A EM R+L + + + + Sbjct: 15 ASAGSGKTFTLTVEYISILVKNPEDYNKMLAVTFTNKATQEMKLRILSQLYG---IGNGL 71 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILET----PGGLKVQTIHAFCEAIMQQFPLEAN 152 S++ +Q K + R+ + ILE +VQTI AF + +++ E Sbjct: 72 PSSDNYLLQVKAKTGLTETSIRNNALYILEKLTHEYQNFRVQTIDAFFQTVLRNLGKELG 131 Query: 153 ITSHFAI 159 +T++ + Sbjct: 132 LTANLRV 138 >gi|254805722|ref|YP_003083943.1| DNA helicase II [Neisseria meningitidis alpha14] gi|254669264|emb|CBA08172.1| DNA helicase II [Neisseria meningitidis alpha14] Length = 735 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|261377453|ref|ZP_05982026.1| ATP-dependent DNA helicase Rep [Neisseria cinerea ATCC 14685] gi|269146180|gb|EEZ72598.1| ATP-dependent DNA helicase Rep [Neisseria cinerea ATCC 14685] Length = 671 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72 >gi|157415048|ref|YP_001482304.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni 81116] gi|157386012|gb|ABV52327.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni 81116] gi|307747689|gb|ADN90959.1| ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni M1] gi|315931191|gb|EFV10163.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp. jejuni 327] Length = 676 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 17 ISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 +S+ +EQ LA+ D R+ V A+AG+GKT +V R+ LL P ++ LT T A Sbjct: 3 LSKLNNEQYLAATADFGRN-LVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNKA 61 Query: 75 AAEMSHRV 82 + EM R+ Sbjct: 62 SKEMIGRL 69 >gi|78358610|ref|YP_390059.1| ATP-dependent DNA helicase UvrD [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78221015|gb|ABB40364.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 719 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +V R+ ++ S +L LT T+ AA EM HR +++ Sbjct: 25 VIAGAGSGKTRTVVYRLANMVQQGIAASNILLLTFTRKAAQEMQHRAAQLL 75 >gi|330826182|ref|YP_004389485.1| UvrD/REP helicase [Alicycliphilus denitrificans K601] gi|329311554|gb|AEB85969.1| UvrD/REP helicase [Alicycliphilus denitrificans K601] Length = 796 Score = 41.6 bits (96), Expect = 0.100, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ EQL A + P A + A AGSGKT +L R+ LL +A P +L +T T Sbjct: 14 LLQGLNPEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLSTGHATPGGILAVTFTNK 73 Query: 74 AAAEMSHRV 82 AA EM R+ Sbjct: 74 AAKEMLTRL 82 >gi|325145300|gb|EGC67578.1| DNA helicase II [Neisseria meningitidis M01-240013] Length = 735 Score = 41.6 bits (96), Expect = 0.100, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|288554983|ref|YP_003426918.1| ATP-dependent DNA helicase [Bacillus pseudofirmus OF4] gi|288546143|gb|ADC50026.1| ATP-dependent DNA helicase [Bacillus pseudofirmus OF4] Length = 742 Score = 41.6 bits (96), Expect = 0.100, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ LL A P +L +T T AA EM RV +++ Sbjct: 32 AGAGSGKTRVLTHRIAYLLREKAIAPWNVLAITFTNKAAREMKDRVAKLV 81 >gi|262282991|ref|ZP_06060758.1| exonuclease RexA [Streptococcus sp. 2_1_36FAA] gi|262261243|gb|EEY79942.1| exonuclease RexA [Streptococcus sp. 2_1_36FAA] Length = 1227 Score = 41.6 bits (96), Expect = 0.100, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 VSA+AGSGKT ++VQR++ +L L T T AA E+ R+ Sbjct: 56 VSASAGSGKTFVMVQRIIDQILRGVSIQELFISTFTVKAAGELKERL 102 >gi|257865963|ref|ZP_05645616.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC30] gi|257872296|ref|ZP_05651949.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC10] gi|257875590|ref|ZP_05655243.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC20] gi|257799897|gb|EEV28949.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC30] gi|257806460|gb|EEV35282.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC10] gi|257809756|gb|EEV38576.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC20] Length = 747 Score = 41.6 bits (96), Expect = 0.100, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ L+ N +P +L +T T AA EM RV +++ + Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKNVNPWNILAITFTNKAAREMKERVSQLLGS 81 >gi|269123730|ref|YP_003306307.1| UvrD/REP helicase [Streptobacillus moniliformis DSM 12112] gi|268315056|gb|ACZ01430.1| UvrD/REP helicase [Streptobacillus moniliformis DSM 12112] Length = 735 Score = 41.6 bits (96), Expect = 0.100, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 40/139 (28%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT L ++ ++ N +P +L LT T AA EM RV ++ ++EI Sbjct: 26 AGAGSGKTRTLTFKIAYMIKEKNINPRNILALTFTNKAAKEMKERVETLVGD----NNEI 81 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 L + T H+F +++ + T++ Sbjct: 82 L-----------------------------------ISTFHSFAVRLLRTYSERIGYTNN 106 Query: 157 FAIADEEQSKKLIEEAKKS 175 F I D K +I++ KS Sbjct: 107 FNIYDNNDQKSIIKKILKS 125 >gi|78186341|ref|YP_374384.1| DNA helicase II [Chlorobium luteolum DSM 273] gi|78166243|gb|ABB23341.1| ATP-dependent DNA helicase PcrA [Chlorobium luteolum DSM 273] Length = 735 Score = 41.6 bits (96), Expect = 0.100, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 55/138 (39%), Gaps = 38/138 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ R+ L+ PS +L LT T AA EM HRV D Sbjct: 25 VLAGAGSGKTRVITYRIAHLIGTKGVPSKNILALTFTNKAAGEMRHRV-----------D 73 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +L P S GL + T H+ +++ + + Sbjct: 74 TLLG----------PGASS----------------GLWIGTFHSVFARLLRDYIERLGYS 107 Query: 155 SHFAIADEEQSKKLIEEA 172 F+I D + SK LI ++ Sbjct: 108 RSFSIFDSDDSKSLIRQS 125 >gi|323463999|gb|ADX76152.1| ATP-dependent DNA helicase PcrA [Staphylococcus pseudintermedius ED99] Length = 731 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ EQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LVANMNKEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63 Query: 74 AAAEMSHRVLEII 86 AA EM RV ++ Sbjct: 64 AAKEMKERVQALV 76 >gi|296115456|ref|ZP_06834090.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769] gi|295978029|gb|EFG84773.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769] Length = 700 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 30/50 (60%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT+ L RV L+ + A P +L LT ++ A+ EM+ V I Sbjct: 44 VIAGAGSGKTNTLAHRVAHLIASGADPRRILLLTFSRRASVEMTRCVERI 93 >gi|257453822|ref|ZP_05619100.1| UvrD/REP helicase [Enhydrobacter aerosaccus SK60] gi|257448749|gb|EEV23714.1| UvrD/REP helicase [Enhydrobacter aerosaccus SK60] Length = 1504 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 6/88 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT L +LRL++ P ++ T T++AAAEM R+ E + + L Sbjct: 57 IEASAGTGKTWTLTGVMLRLIVQAGQPCEKIIATTFTRSAAAEMRQRIRERLQDFYQLLQ 116 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLI 122 I + T + N SD+ ++ + + Sbjct: 117 MINHSTFTPL-----NDSDLDSSKAIAV 139 >gi|296135521|ref|YP_003642763.1| UvrD/REP helicase [Thiomonas intermedia K12] gi|295795643|gb|ADG30433.1| UvrD/REP helicase [Thiomonas intermedia K12] Length = 781 Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 LI Q EQ A + P +A + A AGSGKT +L R+ L+ P+ +L +T T Sbjct: 4 LIQQLNPEQHAAVTLPAENALILAGAGSGKTRVLTTRIAWLISTGQVTPAGILAVTFTNK 63 Query: 74 AAAEMSHRV 82 AA EM R+ Sbjct: 64 AAKEMMARL 72 >gi|183601527|ref|ZP_02962897.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp. lactis HN019] gi|241190974|ref|YP_002968368.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196380|ref|YP_002969935.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219133|gb|EDT89774.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp. lactis HN019] gi|240249366|gb|ACS46306.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250934|gb|ACS47873.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793963|gb|ADG33498.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp. lactis V9] Length = 939 Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ +L A PS +L +T T AAAEM R+ +I Sbjct: 68 IGAGAGSGKTRVLTRRIAWILTQFGAWPSQVLAITFTNKAAAEMRERLGALI 119 >gi|315103757|gb|EFT75733.1| UvrD/REP helicase [Propionibacterium acnes HL050PA2] Length = 1071 Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AG+GKT ++ RV+ L+ + P +L LT TK A AE+S R+ +T Sbjct: 34 PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTKKATAELSERIESNLTR 93 Query: 89 WSHLSDE 95 L+ E Sbjct: 94 VGLLTSE 100 >gi|314923610|gb|EFS87441.1| UvrD/REP helicase [Propionibacterium acnes HL001PA1] Length = 1071 Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AG+GKT ++ RV+ L+ + P +L LT TK A AE+S R+ +T Sbjct: 34 PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTKKATAELSERIESNLTR 93 Query: 89 WSHLSDE 95 L+ E Sbjct: 94 VGLLTSE 100 >gi|304387165|ref|ZP_07369409.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis ATCC 13091] gi|304338769|gb|EFM04879.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis ATCC 13091] Length = 671 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72 >gi|288905008|ref|YP_003430230.1| ATP-dependent deoxyribonuclease (subunit A) [Streptococcus gallolyticus UCN34] gi|288731734|emb|CBI13295.1| ATP-dependent deoxyribonuclease (subunit A) [Streptococcus gallolyticus UCN34] Length = 1210 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 22/155 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT-AWSHLSD 94 VSA+AGSGKT ++V+R++ +L L T T AA E+ R+ + I+ A +D Sbjct: 45 VSASAGSGKTFVMVERIIDKILRGVTIDQLFISTFTVKAAGELKERIEKKISQALQETTD 104 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +D+ + + L+T + T+ AF + ++ Q+ I+ Sbjct: 105 -----------------NDLKNYLNEQLLGLQTA---DIGTMDAFTQKLVNQYGYTLGIS 144 Query: 155 SHFAIADEEQSKKLIE-EAKKSTLASIMLDNNEEL 188 F I E+ + +++ E + M N+ EL Sbjct: 145 PTFRIMTEKSEQDILKNEVFFDLFSDYMTGNDAEL 179 >gi|254670269|emb|CBA05543.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha153] gi|325136509|gb|EGC59113.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M0579] Length = 671 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 21 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72 >gi|238025782|ref|YP_002910013.1| UvrD/REP helicase [Burkholderia glumae BGR1] gi|237874976|gb|ACR27309.1| UvrD/REP helicase [Burkholderia glumae BGR1] Length = 694 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 26/142 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ P + +T T AAAEM RV Sbjct: 22 VLAGAGSGKTRVITQKIAHLIENKGFEPRHIAAVTFTNKAAAEMRERV-----------G 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++L + GK+ K +++ L V T H+ I++Q + Sbjct: 71 KLLEGKTLTTPGKEGRKVPVNQ--------------LTVCTFHSLGVQILRQEAEHVGLK 116 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 F+I D + +++E +T Sbjct: 117 PQFSIMDSDDCFGMVQEQIGTT 138 >gi|153009094|ref|YP_001370309.1| UvrD/REP helicase [Ochrobactrum anthropi ATCC 49188] gi|151560982|gb|ABS14480.1| UvrD/REP helicase [Ochrobactrum anthropi ATCC 49188] Length = 864 Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A+PS +L +T T AA EM R+ ++ Sbjct: 65 VLAGAGTGKTRVLTTRIAHILTTGLAYPSQILAVTFTNKAAREMKERIGHLV 116 >gi|219683935|ref|YP_002470318.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp. lactis AD011] gi|219621585|gb|ACL29742.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp. lactis AD011] Length = 907 Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ +L A PS +L +T T AAAEM R+ +I Sbjct: 36 IGAGAGSGKTRVLTRRIAWILTQFGAWPSQVLAITFTNKAAAEMRERLGALI 87 >gi|314966448|gb|EFT10547.1| UvrD/REP helicase [Propionibacterium acnes HL082PA2] gi|315092775|gb|EFT64751.1| UvrD/REP helicase [Propionibacterium acnes HL060PA1] gi|327327270|gb|EGE69046.1| putative ATP-dependent DNA helicase [Propionibacterium acnes HL103PA1] Length = 1071 Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AG+GKT ++ RV+ L+ + P +L LT TK A AE+S R+ +T Sbjct: 34 PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTKKATAELSERIESNLTR 93 Query: 89 WSHLSDE 95 L+ E Sbjct: 94 VGLLTSE 100 >gi|257869252|ref|ZP_05648905.1| ATP-dependent DNA helicase PcrA [Enterococcus gallinarum EG2] gi|257803416|gb|EEV32238.1| ATP-dependent DNA helicase PcrA [Enterococcus gallinarum EG2] Length = 750 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ L+ N +P +L +T T AA EM RV +++ + Sbjct: 34 AGAGSGKTRVLTHRIAYLIEEKNVNPWNILAITFTNKAAREMKERVNQLLGS 85 >gi|226951282|ref|ZP_03821746.1| UvrD/REP family helicase [Acinetobacter sp. ATCC 27244] gi|226837974|gb|EEH70357.1| UvrD/REP family helicase [Acinetobacter sp. ATCC 27244] Length = 587 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 15/97 (15%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII--- 86 T + +++A GSGKT + QRV + + A+ PS + L+ TK+AA E+ HR+ E I Sbjct: 17 TENIFLNACPGSGKTETIAQRVANEVESWANFPSGIAVLSFTKSAAKEIEHRIKEKIDNN 76 Query: 87 TAWSHLSDEI-----------LSAEITKIQGKKPNKS 112 T + H LS +I+K +G + S Sbjct: 77 TTYPHFIGTFDSFILKNIVNPLSKDISKYEGHNGDYS 113 >gi|34849423|gb|AAP58922.1| ATP-dependent DNA helicase [Spiroplasma kunkelii CR2-3x] Length = 729 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 5/78 (6%) Query: 11 SETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68 +E I+ ++ + E +L + P R + A AGSGKT ++ ++ L+ AN P + + Sbjct: 3 NEFIESLNPNQREAVLRITGPVR---IIAGAGSGKTRVITNKIAYLIKYANLQPWRICAV 59 Query: 69 THTKAAAAEMSHRVLEII 86 T T A EM R++E+I Sbjct: 60 TFTNKATNEMRTRIVEMI 77 >gi|15676157|ref|NP_273289.1| DNA helicase II [Neisseria meningitidis MC58] gi|7225454|gb|AAF40687.1| DNA helicase II [Neisseria meningitidis MC58] Length = 735 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|323697750|ref|ZP_08109662.1| UvrD/REP helicase [Desulfovibrio sp. ND132] gi|323457682|gb|EGB13547.1| UvrD/REP helicase [Desulfovibrio desulfuricans ND132] Length = 718 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 30/56 (53%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 V A AGSGKT +V R+ L+ P+ +L LT T+ AA EM R I+ H Sbjct: 26 VIAGAGSGKTRTIVYRLANLVQKGVDPAQILLLTFTRKAAQEMLARAETILGRPLH 81 >gi|316985163|gb|EFV64115.1| DNA helicase II [Neisseria meningitidis H44/76] gi|325141072|gb|EGC63575.1| DNA helicase II [Neisseria meningitidis CU385] gi|325199439|gb|ADY94894.1| DNA helicase II [Neisseria meningitidis H44/76] Length = 735 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|309379347|emb|CBX22120.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 735 Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|121998060|ref|YP_001002847.1| exodeoxyribonuclease V subunit beta [Halorhodospira halophila SL1] gi|121589465|gb|ABM62045.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Halorhodospira halophila SL1] Length = 1240 Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 89/194 (45%), Gaps = 16/194 (8%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVL 83 S + A+AG+GKT+ + LRL+L + P +L +T T+AA E+ R+ Sbjct: 20 SRLIEASAGTGKTYTIAALYLRLVLNHGREAAYGQSLTPPQILVVTFTEAATRELRERIR 79 Query: 84 -EIITAWSHLSDEILSAEITK----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + A + D + E+ + + P +++ ++A +L E V TIHA Sbjct: 80 SRLAEAAAAFRDPDQAVELDPFLDGLLREYPQRAERAQAARVLELAAEWMDEAAVATIHA 139 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 +C ++++ ++ S F E +L+ E+ + + + + E + F + + Sbjct: 140 WCYRMLREHAFDSG--SLFTQDLETDPGELLAESVRDYWRTFVYPLDPEAFQLFRQAVGA 197 Query: 199 SNDEDIETLISDII 212 ++ + ++ ++ +I Sbjct: 198 ADPDALQRALARLI 211 >gi|298385429|ref|ZP_06994987.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 1_1_14] gi|298261570|gb|EFI04436.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 1_1_14] Length = 788 Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 50/139 (35%), Gaps = 37/139 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT +L ++ LL P +L LT T AA EM R+ Sbjct: 26 VIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAAREMKDRI------------- 72 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + M +AR+L + T H+ I++ TS Sbjct: 73 -------------ARQVGMERARYLWMG-----------TFHSVFSRILRAEAKYIGFTS 108 Query: 156 HFAIADEEQSKKLIEEAKK 174 F I D SK LI K Sbjct: 109 QFTIYDSADSKSLIRSIIK 127 >gi|261379427|ref|ZP_05984000.1| DNA helicase II [Neisseria subflava NJ9703] gi|284797877|gb|EFC53224.1| DNA helicase II [Neisseria subflava NJ9703] Length = 735 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|29346067|ref|NP_809570.1| ATP-dependent DNA helicase [Bacteroides thetaiotaomicron VPI-5482] gi|29337961|gb|AAO75764.1| ATP-dependent DNA helicase [Bacteroides thetaiotaomicron VPI-5482] Length = 788 Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 50/139 (35%), Gaps = 37/139 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT +L ++ LL P +L LT T AA EM R+ Sbjct: 26 VIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAAREMKDRI------------- 72 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + M +AR+L + T H+ I++ TS Sbjct: 73 -------------ARQVGMERARYLWMG-----------TFHSVFSRILRAEAKYIGFTS 108 Query: 156 HFAIADEEQSKKLIEEAKK 174 F I D SK LI K Sbjct: 109 QFTIYDSADSKSLIRSIIK 127 >gi|325198582|gb|ADY94038.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis G2136] Length = 671 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 21 VLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72 >gi|322516094|ref|ZP_08069031.1| exonuclease RexA [Streptococcus vestibularis ATCC 49124] gi|322125509|gb|EFX96855.1| exonuclease RexA [Streptococcus vestibularis ATCC 49124] Length = 1217 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 19/124 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L ++ L T T AA E+ R+ L+++ Sbjct: 45 VSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELKERL------EKRLTEQ 98 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + AE + R L + G + T+ AF + ++ Q+ ++ Sbjct: 99 LGQAET-------------DEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSP 145 Query: 156 HFAI 159 F I Sbjct: 146 IFRI 149 >gi|300814173|ref|ZP_07094456.1| UvrD/REP helicase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511830|gb|EFK39047.1| UvrD/REP helicase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 613 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T+ ++L+ A V A G+GKT IL+ R L L+ +L +T +KAA EMS Sbjct: 4 TEKQKLVTLHRDGPALVLAVPGAGKTTILLHRTLNLIKTGVDAKRILTITFSKAATNEMS 63 Query: 80 HR 81 R Sbjct: 64 KR 65 >gi|302845461|ref|XP_002954269.1| hypothetical protein VOLCADRAFT_118642 [Volvox carteri f. nagariensis] gi|300260474|gb|EFJ44693.1| hypothetical protein VOLCADRAFT_118642 [Volvox carteri f. nagariensis] Length = 1705 Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 8/86 (9%) Query: 11 SETIDLISQTKSEQL----LASDPTRSA---WVSANAGSGKTHILVQRVLRLL-LANAHP 62 +E D SQ + + L LA+ RSA VSA GSGKT L+ RV L+ + HP Sbjct: 341 AEAADTRSQHRYDGLNDEQLAAVRDRSAPIVTVSAGPGSGKTRTLIARVTELVQVHGVHP 400 Query: 63 STLLCLTHTKAAAAEMSHRVLEIITA 88 + +T T+ A E+S R+ E + A Sbjct: 401 RNIGLVTFTRKTADELSSRLREALGA 426 >gi|254881838|ref|ZP_05254548.1| ATP-dependent helicase [Bacteroides sp. 4_3_47FAA] gi|319641141|ref|ZP_07995844.1| ATP-dependent helicase [Bacteroides sp. 3_1_40A] gi|254834631|gb|EET14940.1| ATP-dependent helicase [Bacteroides sp. 4_3_47FAA] gi|317387272|gb|EFV68148.1| ATP-dependent helicase [Bacteroides sp. 3_1_40A] Length = 1058 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 6/126 (4%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95 A+AGSGKT L ++LL+ N +L +T T A EM R+L ++ W + D+ Sbjct: 12 ASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIW--IKDK 69 Query: 96 ILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + KI + + P + + A L ++ +V+TI +F +++M+ E + Sbjct: 70 DSDPYLQKITEELEIPQEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLARELEL 129 Query: 154 TSHFAI 159 ++ I Sbjct: 130 GANLNI 135 >gi|162451111|ref|YP_001613478.1| exodeoxyribonuclease V beta chain [Sorangium cellulosum 'So ce 56'] gi|161161693|emb|CAN92998.1| Exodeoxyribonuclease V beta chain [Sorangium cellulosum 'So ce 56'] Length = 1347 Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 21/176 (11%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPST--------------LLCLTHTKAAAAE 77 R+ V+A+AG+GKTH L + L L ++ T ++AAA E Sbjct: 22 RNVVVAASAGTGKTHRLTALYVLLTLGLTSLGLPDAASAAPPVPPDRIVATTFSRAAARE 81 Query: 78 MSHRV---LEIITAWSHLSD----EILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 ++HRV L I W+ +D +IL A + G +++ R L Sbjct: 82 IAHRVERSLREIARWNGEADIPFADILRARQAAVAGLGGASLPVAELRKRAEEALARLPA 141 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 ++ T+H + I+ + + ++ I DEE+++ L + A L+ + + E Sbjct: 142 ARIDTLHGVAKQIVDRHAIAMGLSPSARILDEEEAQALSDLAVDEALSRALAEGGE 197 >gi|15645527|ref|NP_207703.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Helicobacter pylori 26695] gi|2314046|gb|AAD07956.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Helicobacter pylori 26695] Length = 675 Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 19 QTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ + + A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKAAKALQGHNLIIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65 Query: 78 MSHRVLEIITAWSHL 92 M RV + + S + Sbjct: 66 MIARVAKYFKSSSKI 80 >gi|84494608|ref|ZP_00993727.1| putative DNA helicase [Janibacter sp. HTCC2649] gi|84384101|gb|EAP99981.1| putative DNA helicase [Janibacter sp. HTCC2649] Length = 1103 Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Query: 11 SETIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLC 67 +E I L + EQ + P R V A AGSGKT + RV+ L+AN P +L Sbjct: 20 AEAIGLPHRPTPEQTAVIEAPLRPLLVIAGAGSGKTETMAARVV-WLVANGFVEPEDVLG 78 Query: 68 LTHTKAAAAEMSHRV 82 LT T+ AA E+S R+ Sbjct: 79 LTFTRKAATELSDRI 93 >gi|319892948|ref|YP_004149823.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus pseudintermedius HKU10-03] gi|317162644|gb|ADV06187.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus pseudintermedius HKU10-03] Length = 731 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ EQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LVANMNKEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63 Query: 74 AAAEMSHRVLEII 86 AA EM RV ++ Sbjct: 64 AAKEMKERVQALV 76 >gi|315605038|ref|ZP_07880092.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313317|gb|EFU61380.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 180 str. F0310] Length = 932 Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 39/141 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL A +L +T T AAAEM R ++ Sbjct: 107 ILAGAGSGKTRVLTHRIAYLLATGRARAGQILAITFTNKAAAEMRERAGALVGG------ 160 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 AR + ++ T H+ C +++ A ++ Sbjct: 161 ---------------------DARRMWVS-----------TFHSACVRLLRYEHEAAGLS 188 Query: 155 SHFAIADEEQSKKLIEEAKKS 175 S F I D + S++LI+ K+ Sbjct: 189 SSFTIYDAQDSQRLIQMVLKA 209 >gi|126695666|ref|YP_001090552.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9301] gi|126542709|gb|ABO16951.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9301] Length = 802 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 2/54 (3%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT L R+ L+ N+ P +L +T T AA EM R LE++ A Sbjct: 29 VVAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAKEMKGR-LEVLLA 81 >gi|82776253|ref|YP_402602.1| DNA helicase IV [Shigella dysenteriae Sd197] gi|81240401|gb|ABB61111.1| DNA helicase IV [Shigella dysenteriae Sd197] Length = 684 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R LL+ A P +L L + AA EM R+ E W H D Sbjct: 214 VLAGAGSGKTSVLVARAGWLLVRGEASPEQILLLAFGRKAAEEMDERIRE----WLHTED 269 >gi|325132192|gb|EGC54888.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M6190] gi|325138125|gb|EGC60698.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis ES14902] Length = 671 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 21 VLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72 >gi|237725569|ref|ZP_04556050.1| ATP-dependent helicase [Bacteroides sp. D4] gi|229436256|gb|EEO46333.1| ATP-dependent helicase [Bacteroides dorei 5_1_36/D4] Length = 1058 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 6/126 (4%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95 A+AGSGKT L ++LL+ N +L +T T A EM R+L ++ W + D+ Sbjct: 12 ASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIW--IKDK 69 Query: 96 ILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + KI + + P + + A L ++ +V+TI +F +++M+ E + Sbjct: 70 DSDPYLQKITEELEMPPEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLARELEL 129 Query: 154 TSHFAI 159 ++ I Sbjct: 130 GANLNI 135 >gi|254515937|ref|ZP_05127997.1| DNA helicase II [gamma proteobacterium NOR5-3] gi|219675659|gb|EED32025.1| DNA helicase II [gamma proteobacterium NOR5-3] Length = 717 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 V A AGSGKT +LV R+ L+ A P LL +T T AA EM R+ ++ +H Sbjct: 27 VLAGAGSGKTRVLVHRIAWLIRAEGLSPHALLAVTFTNKAAREMRGRIEHMLQIPTH 83 >gi|15895932|ref|NP_349281.1| ATP-dependent DNA helicase [Clostridium acetobutylicum ATCC 824] gi|15025705|gb|AAK80621.1|AE007765_3 ATP-dependent superfamily I DNA helicase, PCRA [Clostridium acetobutylicum ATCC 824] gi|325510084|gb|ADZ21720.1| ATP-dependent superfamily I DNA helicase, PCRA [Clostridium acetobutylicum EA 2018] Length = 756 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ ++ +PS +L +T T AA EM RV +I Sbjct: 26 AGAGSGKTRVLTYRIAHMVKDLEIYPSQILAITFTNKAAKEMKDRVKALIGG 77 >gi|309786700|ref|ZP_07681320.1| helicase IV [Shigella dysenteriae 1617] gi|308925393|gb|EFP70880.1| helicase IV [Shigella dysenteriae 1617] Length = 684 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R LL+ A P +L L + AA EM R+ E W H D Sbjct: 214 VLAGAGSGKTSVLVARAGWLLVRGEASPEQILLLAFGRKAAEEMDERIRE----WLHTED 269 >gi|309805876|ref|ZP_07699911.1| ATP-dependent helicase PcrA [Lactobacillus iners LactinV 03V1-b] gi|308167785|gb|EFO69929.1| ATP-dependent helicase PcrA [Lactobacillus iners LactinV 03V1-b] Length = 577 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L +R+ L+ P +L +T T AA+EM RV +++ Sbjct: 27 VVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLD------- 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 S A + ++ T HA C I++++ + Sbjct: 80 --------------------SDADSIWMS-----------TFHALCVRILRRYAEKIGYA 108 Query: 155 SHFAIADEEQSKKLIE 170 ++F+IAD + LI+ Sbjct: 109 NNFSIADTAEQLTLIK 124 >gi|262199184|ref|YP_003270393.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365] gi|262082531|gb|ACY18500.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365] Length = 787 Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +LV R+ ++ P +L +T T AA EM R+ E++ Sbjct: 24 VLAGAGTGKTRVLVNRIAHMVDRGVPPRDILAVTFTNKAAKEMRERLRELL 74 >gi|298529833|ref|ZP_07017236.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1] gi|298511269|gb|EFI35172.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1] Length = 1027 Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 30/50 (60%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A G+GKT L+ +V RLL +P +L LT T+ AA E+ R++ I Sbjct: 481 VMAGPGTGKTQTLMGKVSRLLEQEVNPRHILVLTFTRKAARELKDRLISI 530 >gi|212693031|ref|ZP_03301159.1| hypothetical protein BACDOR_02538 [Bacteroides dorei DSM 17855] gi|212664398|gb|EEB24970.1| hypothetical protein BACDOR_02538 [Bacteroides dorei DSM 17855] Length = 1058 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 6/126 (4%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95 A+AGSGKT L ++LL+ N +L +T T A EM R+L ++ W + D+ Sbjct: 12 ASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIW--IKDK 69 Query: 96 ILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + KI + + P + + A L ++ +V+TI +F +++M+ E + Sbjct: 70 DSDPYLQKITEELEMPPEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLARELEL 129 Query: 154 TSHFAI 159 ++ I Sbjct: 130 GANLNI 135 >gi|207724952|ref|YP_002255349.1| atp-dependent dna helicase II protein [Ralstonia solanacearum MolK2] gi|206590179|emb|CAQ37140.1| atp-dependent dna helicase II protein [Ralstonia solanacearum MolK2] Length = 710 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 53/134 (39%), Gaps = 22/134 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT L RV L+ A P +L LT ++ AA+E+S R ++ Sbjct: 45 VLAGAGSGKTQTLGWRVAHLVAHGADPQRILLLTFSRRAASELSSRAGHLLA-------- 96 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +QG N S A T L G T H +++++ + Sbjct: 97 ------RAMQG---NTGTRSAAGTTYQTALPWAG-----TFHGIGARLLREYAERIGLAP 142 Query: 156 HFAIADEEQSKKLI 169 F I D S L+ Sbjct: 143 DFTIHDRSDSADLL 156 >gi|119503547|ref|ZP_01625630.1| DNA helicase II [marine gamma proteobacterium HTCC2080] gi|119460609|gb|EAW41701.1| DNA helicase II [marine gamma proteobacterium HTCC2080] Length = 721 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L+ A P LL +T T AA EM R+ ++ Sbjct: 27 VLAGAGSGKTRVLVHRMAWLIRAEGVSPHALLSVTFTNKAAREMRSRIESML-------- 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 D+S G+ V T H +++Q EA + Sbjct: 79 ------------------DVSTQ------------GMWVGTFHGLAHRLLKQHWQEAQLP 108 Query: 155 SHFAIADEEQSKKLIE 170 +F I D + +L++ Sbjct: 109 QNFQILDSDDQLRLVK 124 >gi|265753493|ref|ZP_06088848.1| ATP-dependent helicase [Bacteroides sp. 3_1_33FAA] gi|263235207|gb|EEZ20731.1| ATP-dependent helicase [Bacteroides sp. 3_1_33FAA] Length = 1058 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 6/126 (4%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSDE 95 A+AGSGKT L ++LL+ N +L +T T A EM R+L ++ W + D+ Sbjct: 12 ASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIW--IKDK 69 Query: 96 ILSAEITKI--QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + KI + + P + + A L ++ +V+TI +F +++M+ E + Sbjct: 70 DSDPYLQKITEELEMPPEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLARELEL 129 Query: 154 TSHFAI 159 ++ I Sbjct: 130 GANLNI 135 >gi|300781705|ref|ZP_07091559.1| ATP-dependent DNA helicase PcrA [Corynebacterium genitalium ATCC 33030] gi|300533412|gb|EFK54473.1| ATP-dependent DNA helicase PcrA [Corynebacterium genitalium ATCC 33030] Length = 764 Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 50/179 (27%), Positives = 69/179 (38%), Gaps = 49/179 (27%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 DL +Q A + T S + A AGSGKT +L +R+ LL P +L +T T Sbjct: 4 DLTLGLNPQQKAAVEHTGSPLLIVAGAGSGKTAVLTRRIAYLLQERGVAPWEILAITFTN 63 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV +I P M Sbjct: 64 KAAAEMKERVGALI---------------------GPQAERMW----------------- 85 Query: 133 VQTIHAFCEAIM-QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 V T H+ C I+ QQ L + ++F I D + S++L L I + N +LKK Sbjct: 86 VATFHSVCVRILRQQAQLVPGLNTNFTIYDGDDSRRL--------LGMIAKEMNLDLKK 136 >gi|240014083|ref|ZP_04720996.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI18] gi|240121644|ref|ZP_04734606.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae PID24-1] Length = 671 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 +V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 20 FVLAGAGSGKTGVITQKMKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72 >gi|163756939|ref|ZP_02164046.1| Superfamily I DNA and RNA helicase [Kordia algicida OT-1] gi|161323058|gb|EDP94400.1| Superfamily I DNA and RNA helicase [Kordia algicida OT-1] Length = 914 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 33/49 (67%), Gaps = 1/49 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 A AG+GKT ++ QR++ +L + P ++ T+T+ AAAE+ RVL++ Sbjct: 22 ACAGAGKTQVISQRLVEVLKQKDVEPINVIAFTYTEKAAAELKTRVLKL 70 >gi|73662195|ref|YP_300976.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494710|dbj|BAE18031.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 738 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+++ EQ A T + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LVNKMNDEQSQAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 74 AAAEMSHRV 82 AA EM RV Sbjct: 64 AAKEMKARV 72 >gi|23098214|ref|NP_691680.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831] gi|22776439|dbj|BAC12715.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831] Length = 741 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ + P +L +T T AA EM RV +++ Sbjct: 29 IMAGAGSGKTRVLTHRIAYLMGEKDVSPRNILAITFTNKAAREMKERVSKLV 80 >gi|325205799|gb|ADZ01252.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M04-240196] Length = 671 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 21 VLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72 >gi|319761999|ref|YP_004125936.1| uvrd/rep helicase [Alicycliphilus denitrificans BC] gi|317116560|gb|ADU99048.1| UvrD/REP helicase [Alicycliphilus denitrificans BC] Length = 796 Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ EQL A + P A + A AGSGKT +L R+ LL +A P +L +T T Sbjct: 14 LLQGLNPEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLSTGHATPGGILAVTFTNK 73 Query: 74 AAAEMSHRV 82 AA EM R+ Sbjct: 74 AAKEMLTRL 82 >gi|297242864|ref|ZP_06926802.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis AMD] gi|296889075|gb|EFH27809.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis AMD] Length = 981 Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ +L A PS +L +T T AAAEM R+ +I Sbjct: 127 IGAGAGSGKTRVLTRRIAWILSQKGAWPSQILAITFTNKAAAEMRERLSNLI 178 >gi|293189079|ref|ZP_06607806.1| ATP-dependent DNA helicase [Actinomyces odontolyticus F0309] gi|292821993|gb|EFF80925.1| ATP-dependent DNA helicase [Actinomyces odontolyticus F0309] Length = 944 Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 39/141 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL A +L +T T AAAEM R A + + D Sbjct: 106 ILAGAGSGKTRVLTHRIAYLLATGRARAGEILAITFTNKAAAEMRER------AGALVGD 159 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + AR + ++ T H+ C +++ A ++ Sbjct: 160 D---------------------ARRMWVS-----------TFHSACVRLLRYKHEAAGLS 187 Query: 155 SHFAIADEEQSKKLIEEAKKS 175 S F I D + S++LI+ K+ Sbjct: 188 SSFTIYDAQDSQRLIQMVLKA 208 >gi|253995787|ref|YP_003047851.1| UvrD/REP helicase [Methylotenera mobilis JLW8] gi|253982466|gb|ACT47324.1| UvrD/REP helicase [Methylotenera mobilis JLW8] Length = 736 Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ ++QL A + P +SA + A AGSGKT +L R+ L+ P+ LL +T T Sbjct: 11 LLAGLNNKQLEAVTLPQQSALILAGAGSGKTRVLTARIAWLIQTEQVSPTGLLAVTFTNK 70 Query: 74 AAAEMSHRV 82 AA EM R+ Sbjct: 71 AAKEMLTRI 79 >gi|261400922|ref|ZP_05987047.1| DNA helicase II [Neisseria lactamica ATCC 23970] gi|269209154|gb|EEZ75609.1| DNA helicase II [Neisseria lactamica ATCC 23970] Length = 735 Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|322832278|ref|YP_004212305.1| UvrD/REP helicase [Rahnella sp. Y9602] gi|321167479|gb|ADW73178.1| UvrD/REP helicase [Rahnella sp. Y9602] Length = 684 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL AHP +L L + AA EM+ R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLRRQEAHPEQILLLAFGRQAADEMNGRIKE 263 >gi|152991215|ref|YP_001356937.1| ATP-dependent DNA helicase UvrD [Nitratiruptor sp. SB155-2] gi|151423076|dbj|BAF70580.1| ATP-dependent DNA helicase, UvrD/REP family [Nitratiruptor sp. SB155-2] Length = 681 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT + R+ L+ P+++L LT T AA EM R L ++ + Sbjct: 27 AGAGSGKTKTITTRLAYLISLGIDPASILTLTFTNKAAKEMRERALSMLDS 77 >gi|118467070|ref|YP_883295.1| superfamily protein I DNA and RNA helicases [Mycobacterium avium 104] gi|118168357|gb|ABK69254.1| superfamily protein I DNA and RNA helicases [Mycobacterium avium 104] Length = 1096 Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPS 63 S +E + + L T+ + + + P V A AG+GKT + RV+ L+AN AHP Sbjct: 6 SPRELACALGLFPPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLIANGYAHPG 64 Query: 64 TLLCLTHTKAAAAEMSHRV 82 +L LT T+ AA ++ RV Sbjct: 65 QVLGLTFTRKAAGQLLRRV 83 >gi|157803783|ref|YP_001492332.1| DNA helicase II [Rickettsia canadensis str. McKiel] gi|157785046|gb|ABV73547.1| DNA helicase II [Rickettsia canadensis str. McKiel] Length = 661 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AG+GKT +L R+ ++ N A P +L +T T AA EM RV +I Sbjct: 39 AGAGTGKTKVLTSRIANIIYQNLASPHNILAVTFTNKAAKEMVERVHSLINC 90 >gi|41409398|ref|NP_962234.1| hypothetical protein MAP3300c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398229|gb|AAS05850.1| hypothetical protein MAP_3300c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 1096 Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPS 63 S +E + + L T+ + + + P V A AG+GKT + RV+ L+AN AHP Sbjct: 6 SPRELACALGLFPPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLIANGYAHPG 64 Query: 64 TLLCLTHTKAAAAEMSHRV 82 +L LT T+ AA ++ RV Sbjct: 65 QVLGLTFTRKAAGQLLRRV 83 >gi|329901071|ref|ZP_08272696.1| ATP-dependent DNA helicase UvrD/PcrA [Oxalobacteraceae bacterium IMCC9480] gi|327549259|gb|EGF33838.1| ATP-dependent DNA helicase UvrD/PcrA [Oxalobacteraceae bacterium IMCC9480] Length = 753 Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +L+ EQL A + P + A + A AGSGKT +L R+ L+ A P+ +L +T T Sbjct: 3 NLLHNLNPEQLAAVTLPAQHALILAGAGSGKTRVLTTRIAWLIQNGAVAPNGVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM+ R+ Sbjct: 63 KAAKEMTLRL 72 >gi|239832290|ref|ZP_04680619.1| DNA helicase II [Ochrobactrum intermedium LMG 3301] gi|239824557|gb|EEQ96125.1| DNA helicase II [Ochrobactrum intermedium LMG 3301] Length = 859 Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A+PS +L +T T AA EM R+ ++ Sbjct: 65 VLAGAGTGKTRVLTTRIAHILTTGLAYPSQILAVTFTNKAAREMKERIGHLV 116 >gi|154509660|ref|ZP_02045302.1| hypothetical protein ACTODO_02193 [Actinomyces odontolyticus ATCC 17982] gi|153799294|gb|EDN81714.1| hypothetical protein ACTODO_02193 [Actinomyces odontolyticus ATCC 17982] Length = 900 Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 39/141 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL A +L +T T AAAEM R A + + D Sbjct: 106 ILAGAGSGKTRVLTHRIAYLLARGRARAGEILAITFTNKAAAEMRER------AGALVGD 159 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + AR + ++ T H+ C +++ A ++ Sbjct: 160 D---------------------ARRMWVS-----------TFHSACVRLLRYEHEAAGLS 187 Query: 155 SHFAIADEEQSKKLIEEAKKS 175 S F I D + S++LI+ K+ Sbjct: 188 SSFTIYDAQDSQRLIQMVLKA 208 >gi|121635136|ref|YP_975381.1| ATP-dependent DNA helicase [Neisseria meningitidis FAM18] gi|120866842|emb|CAM10600.1| ATP-dependent DNA helicase [Neisseria meningitidis FAM18] Length = 690 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 40 VLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 91 >gi|120613110|ref|YP_972788.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1] gi|120591574|gb|ABM35014.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1] Length = 689 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ ++ RL+ P + +T T AAAEM R +I Sbjct: 22 VLAGAGSGKTRVITMKIGRLIETGLEPRRIAAITFTNKAAAEMRERAQHLI 72 >gi|159185029|ref|NP_355024.2| DNA helicase II [Agrobacterium tumefaciens str. C58] gi|159140303|gb|AAK87809.2| DNA helicase II [Agrobacterium tumefaciens str. C58] Length = 824 Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AG+GKT +L R+ +L A+PS +L +T T AA EM R+ Sbjct: 73 VLAGAGTGKTRVLTTRIAHILATGRAYPSQILAVTFTNKAAREMKERI 120 >gi|189466027|ref|ZP_03014812.1| hypothetical protein BACINT_02391 [Bacteroides intestinalis DSM 17393] gi|189434291|gb|EDV03276.1| hypothetical protein BACINT_02391 [Bacteroides intestinalis DSM 17393] Length = 1073 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 9/129 (6%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA-WSHLSDE 95 A+AGSGKT L ++ L+ N +L +T T A AEM R+L+ + W +SD Sbjct: 8 ASAGSGKTFTLAVEYIKHLILNPRAYRQILAVTFTNKATAEMKERILQQLYGIW--VSDP 65 Query: 96 ILSAEITKI----QGKKPNKSDMS-KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + +I Q K ++ D+ A L +L +V+TI +F +++M+ E Sbjct: 66 ASEPYLNRIREDLQRKNLSEDDIRLAAGTALQYMLHDYSRFRVETIDSFFQSVMRNLARE 125 Query: 151 ANITSHFAI 159 ++ + I Sbjct: 126 LELSPNLNI 134 >gi|257075812|ref|ZP_05570173.1| ATP-dependent DNA helicase [Ferroplasma acidarmanus fer1] Length = 890 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 26/52 (50%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 R V +N G+GKT ++ V+ L+ P +LC+T T A E+ + Sbjct: 3 NRDTLVISNPGTGKTTMISNEVINLIKEGVKPEKILCITFTNNAVGELQKSI 54 >gi|86141573|ref|ZP_01060119.1| putative helicase [Leeuwenhoekiella blandensis MED217] gi|85832132|gb|EAQ50587.1| putative helicase [Leeuwenhoekiella blandensis MED217] Length = 773 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 27/51 (52%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ +L LT T AA EM R+ I+ Sbjct: 25 VIAGAGSGKTRVLTMRIAHLMQQGVDAFNILSLTFTNKAAREMKSRIGTIV 75 >gi|152978934|ref|YP_001344563.1| DNA-dependent helicase II [Actinobacillus succinogenes 130Z] gi|150840657|gb|ABR74628.1| DNA helicase II [Actinobacillus succinogenes 130Z] Length = 731 Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 3/81 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLT 69 SE +D ++ + E + A P + V A AGSGKT +L QR+ L+ +++ +T Sbjct: 4 SELLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTQRIAWLIAVEGISEGSIMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWS 90 T AAAEM R+ + +S Sbjct: 62 FTNKAAAEMRQRIESALARYS 82 >gi|325996193|gb|ADZ51598.1| ATP-dependent DNA helicase [Helicobacter pylori 2018] Length = 403 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 11/101 (10%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A+AG+GKT +V R+L LL P +L LT T A+ EM RV +S LS +I Sbjct: 26 ASAGTGKTSTIVGRILHLLNNGIKPEEILLLTFTNKASNEMIARV----AKYSKLSSKIE 81 Query: 98 SAEITKIQGK-----KPNKS--DMSKARHLLITILETPGGL 131 + + + PN S + R LL +I++T L Sbjct: 82 AGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKNAL 122 >gi|299131903|ref|ZP_07025098.1| UvrD/REP helicase [Afipia sp. 1NLS2] gi|298592040|gb|EFI52240.1| UvrD/REP helicase [Afipia sp. 1NLS2] Length = 830 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A P +L +T T AA EM HR+ E++ Sbjct: 55 VLAGAGTGKTRVLTSRIAHILSQGRARPFEILSVTFTNKAAREMKHRLGEML 106 >gi|254672332|emb|CBA05496.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha275] Length = 671 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 21 VLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 72 >gi|323341292|ref|ZP_08081537.1| ATP-dependent DNA helicase PcrA [Lactobacillus ruminis ATCC 25644] gi|323091286|gb|EFZ33913.1| ATP-dependent DNA helicase PcrA [Lactobacillus ruminis ATCC 25644] Length = 756 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + A AGSGKT +L RV L+ N +P +L +T T AA EM R+ ++ S Sbjct: 38 IMAGAGSGKTRVLTHRVAYLIEHQNVNPWNILAITFTNKAAREMRERIDRLVEYGS 93 >gi|312887473|ref|ZP_07747072.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603] gi|311300113|gb|EFQ77183.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603] Length = 758 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 26/48 (54%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 A AGSGKT ++ RV L+ +L LT T AA EM R++ + Sbjct: 26 AGAGSGKTRVITYRVAHLVQKGVDSFNILVLTFTNKAAREMRERIMHV 73 >gi|149914444|ref|ZP_01902975.1| Putative uvrD/DNA Helicase II [Roseobacter sp. AzwK-3b] gi|149811963|gb|EDM71796.1| Putative uvrD/DNA Helicase II [Roseobacter sp. AzwK-3b] Length = 786 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L +R++ LL +A PS +L +T T AA EM RV Sbjct: 50 AGAGTGKTKALTKRIVHLLNTGSARPSEILAVTFTNKAAREMKSRV 95 >gi|307354471|ref|YP_003895522.1| UvrD/REP helicase [Methanoplanus petrolearius DSM 11571] gi|307157704|gb|ADN37084.1| UvrD/REP helicase [Methanoplanus petrolearius DSM 11571] Length = 1004 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A GSGKT ++ +++L ++ N A P +L LT ++ AAAEM+ R+ Sbjct: 25 VLAGPGSGKTRVITEKILHMIRENGAKPEEILALTFSEKAAAEMAERL 72 >gi|242240110|ref|YP_002988291.1| DNA helicase IV [Dickeya dadantii Ech703] gi|242132167|gb|ACS86469.1| UvrD/REP helicase [Dickeya dadantii Ech703] Length = 685 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A A P +L L + AA EM+ RV E Sbjct: 214 VLAGAGSGKTSVLVARAAWLLRSAQARPEQILLLAFGRQAAEEMNGRVRE 263 >gi|291456202|ref|ZP_06595592.1| UvrD/REP helicase family protein [Bifidobacterium breve DSM 20213] gi|291381479|gb|EFE88997.1| UvrD/REP helicase family protein [Bifidobacterium breve DSM 20213] Length = 1311 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT + QR++ L+ P +L LT T+ AA E+ RV Sbjct: 24 VVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLERV 70 >gi|213692487|ref|YP_002323073.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523948|gb|ACJ52695.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458632|dbj|BAJ69253.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 897 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ +L A PS +L +T T AAAEM R+ +I Sbjct: 36 IGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAAEMRERLGSLI 87 >gi|108563318|ref|YP_627634.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter pylori HPAG1] gi|107837091|gb|ABF84960.1| rep helicase, single-stranded DNA-dependent ATPase [Helicobacter pylori HPAG1] Length = 675 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 19 QTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q EQL A+ + + A+AG+GKT +V R+L LL P +L LT T A+ E Sbjct: 6 QLNPEQLKAAKALQGHNLIIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNE 65 Query: 78 MSHRVLEIITAWSHL 92 M RV + + S + Sbjct: 66 MIARVAKYFKSSSKI 80 >gi|325911371|ref|ZP_08173783.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 143-D] gi|325476721|gb|EGC79875.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 143-D] Length = 742 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L +R+ L+ P +L +T T AA+EM RV +++ Sbjct: 27 VVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLD------- 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 S A + ++ T HA C I++++ + Sbjct: 80 --------------------SDADSIWMS-----------TFHALCVRILRRYAEKIGYA 108 Query: 155 SHFAIADEEQSKKLIE 170 ++F+IAD + LI+ Sbjct: 109 NNFSIADTAEQLTLIK 124 >gi|260892971|ref|YP_003239068.1| UvrD/REP helicase [Ammonifex degensii KC4] gi|260865112|gb|ACX52218.1| UvrD/REP helicase [Ammonifex degensii KC4] Length = 707 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 39/137 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ P +L LT T AA EM RV ++ Sbjct: 24 VLAGAGSGKTRVLTYRIAYLITYRGVPPEAILALTFTNKAAEEMRARVTSLL-------- 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P +++ L V T HA C +++Q Sbjct: 76 --------------PREAE----------------DLWVMTFHAACARLLRQEIHHLGRD 105 Query: 155 SHFAIADEEQSKKLIEE 171 FAI DE+ + L+ E Sbjct: 106 RDFAIYDEDDRRALMRE 122 >gi|237746997|ref|ZP_04577477.1| DNA helicase II [Oxalobacter formigenes HOxBLS] gi|229378348|gb|EEO28439.1| DNA helicase II [Oxalobacter formigenes HOxBLS] Length = 762 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +++ EQL A + P++SA + A AGSGKT +L R+ LL S ++ +T T Sbjct: 3 NMLENLNPEQLAAVTLPSQSALILAGAGSGKTRVLTTRIAWLLKTGQVSTSGIMAVTFTN 62 Query: 73 AAAAEMSHRVLEIITA 88 AA EM R+ + A Sbjct: 63 KAAKEMMSRLSTLFPA 78 >gi|207738731|ref|YP_002257124.1| atp-dependent dna helicase II protein [Ralstonia solanacearum IPO1609] gi|206592099|emb|CAQ59005.1| atp-dependent dna helicase II protein [Ralstonia solanacearum IPO1609] Length = 691 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 52/134 (38%), Gaps = 22/134 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT L RV L+ A P +L LT ++ AA+E+S R ++ S Sbjct: 26 VLAGAGSGKTQTLGWRVAHLVAHGADPQRILLLTFSRRAASELSSRAGHLLARAMQGSTG 85 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 SA T Q T L G T H +++++ + Sbjct: 86 TRSAAGTTYQ-----------------TALPWAG-----TFHGIGARLLREYAERIGLAP 123 Query: 156 HFAIADEEQSKKLI 169 F I D S L+ Sbjct: 124 DFTIHDRSDSADLL 137 >gi|190346242|gb|EDK38280.2| hypothetical protein PGUG_02378 [Meyerozyma guilliermondii ATCC 6260] Length = 830 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 37/138 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A G+GKT +LV RV LLL + P ++ T TK AA EM R+ ++ Sbjct: 30 VIAGPGTGKTKVLVSRVAHLLLHDQIPPQQIIVTTFTKKAANEMVSRLRLVL-------- 81 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +D+ R L V T H+ C I++++ + Sbjct: 82 ---------------QDTDIDVNR------------LMVGTFHSICYRIIKKYGHLIGLE 114 Query: 155 SHFAIADEEQSKKLIEEA 172 F IADE+ S L+EE Sbjct: 115 G-FTIADEKDSIHLLEEC 131 >gi|71906186|ref|YP_283773.1| ATP-dependent DNA helicase UvrD [Dechloromonas aromatica RCB] gi|71845807|gb|AAZ45303.1| ATP-dependent DNA helicase UvrD [Dechloromonas aromatica RCB] Length = 713 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL++ S QL A + P A + A AGSGKT +L R+ L+ P +L +T T Sbjct: 3 DLLANLNSPQLQAVTLPPVHALILAGAGSGKTRVLTTRIAWLISTGQVGPHGVLAVTFTN 62 Query: 73 AAAAEMSHRVLEII 86 AA EM+ R+ ++ Sbjct: 63 KAAKEMTARLSSLV 76 >gi|319655031|ref|ZP_08009102.1| PcrA protein [Bacillus sp. 2_A_57_CT2] gi|317393298|gb|EFV74065.1| PcrA protein [Bacillus sp. 2_A_57_CT2] Length = 743 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT +L R+ L++ +P +L +T T AA EM R+ Sbjct: 29 IMAGAGSGKTRVLTHRIAYLMVEKGVNPYNILAITFTNKAAREMRDRI 76 >gi|224476962|ref|YP_002634568.1| ATP-dependent DNA helicase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421569|emb|CAL28383.1| ATP-dependent DNA helicase [Staphylococcus carnosus subsp. carnosus TM300] Length = 731 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ LL P +L +T T AA EM RV +++ Sbjct: 25 IMAGAGSGKTRVLTHRIAYLLDEKGVSPYNVLAITFTNKAAREMKERVEKLV 76 >gi|161870316|ref|YP_001599486.1| ATP-dependent DNA helicase [Neisseria meningitidis 053442] gi|161595869|gb|ABX73529.1| ATP-dependent DNA helicase [Neisseria meningitidis 053442] Length = 690 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ L++ + P T+ +T T AAAEM RV +++ Sbjct: 40 VLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAEMQERVAKML 91 >gi|146301512|ref|YP_001196103.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101] gi|146155930|gb|ABQ06784.1| ATP-dependent DNA helicase, Rep family [Flavobacterium johnsoniae UW101] Length = 787 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 10/83 (12%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV---------LEI 85 V A AGSGKT L R ++ + S +LC+T T AA EM RV L Sbjct: 26 VIAGAGSGKTKALTSRFAYIVDRLGINSSNILCVTFTNKAAQEMKKRVKALIGDTYDLAF 85 Query: 86 ITAWSHLSDEILSAEITKIQGKK 108 IT + L EI KI K Sbjct: 86 ITTYHGFCVRFLREEINKIHFPK 108 >gi|317482225|ref|ZP_07941247.1| ATP-dependent DNA helicase PcrA [Bifidobacterium sp. 12_1_47BFAA] gi|316916363|gb|EFV37763.1| ATP-dependent DNA helicase PcrA [Bifidobacterium sp. 12_1_47BFAA] Length = 884 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ +L A PS +L +T T AAAEM R+ +I Sbjct: 36 IGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAAEMRERLGSLI 87 >gi|189439490|ref|YP_001954571.1| superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A] gi|312132895|ref|YP_004000234.1| uvrd2 [Bifidobacterium longum subsp. longum BBMN68] gi|322688951|ref|YP_004208685.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp. infantis 157F] gi|189427925|gb|ACD98073.1| Superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A] gi|311773868|gb|ADQ03356.1| UvrD2 [Bifidobacterium longum subsp. longum BBMN68] gi|320460287|dbj|BAJ70907.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp. infantis 157F] Length = 900 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ +L A PS +L +T T AAAEM R+ +I Sbjct: 36 IGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAAEMRERLGSLI 87 >gi|50955506|ref|YP_062794.1| ATP-dependent DNA helicase II [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951988|gb|AAT89689.1| ATP-dependent DNA helicase II [Leifsonia xyli subsp. xyli str. CTCB07] Length = 833 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ L+ + A PS +L +T T AA EM RV +++ Sbjct: 66 IVAGAGSGKTSVLTRRIAGLIESREAWPSEILAITFTNKAANEMRERVEQLL 117 >gi|23465464|ref|NP_696067.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum NCC2705] gi|239622010|ref|ZP_04665041.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|23326117|gb|AAN24703.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum NCC2705] gi|239515201|gb|EEQ55068.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 881 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ +L A PS +L +T T AAAEM R+ +I Sbjct: 36 IGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAAEMRERLGSLI 87 >gi|322690920|ref|YP_004220490.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp. longum JCM 1217] gi|320455776|dbj|BAJ66398.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp. longum JCM 1217] Length = 900 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ +L A PS +L +T T AAAEM R+ +I Sbjct: 36 IGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAAEMRERLGSLI 87 >gi|309804689|ref|ZP_07698754.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV 09V1-c] gi|309809370|ref|ZP_07703232.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN 2503V10-D] gi|312873367|ref|ZP_07733418.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2052A-d] gi|308166081|gb|EFO68299.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV 09V1-c] gi|308170281|gb|EFO72312.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN 2503V10-D] gi|311091051|gb|EFQ49444.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2052A-d] Length = 742 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L +R+ L+ P +L +T T AA+EM RV +++ Sbjct: 27 VVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLD------- 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 S A + ++ T HA C I++++ + Sbjct: 80 --------------------SDADSIWMS-----------TFHALCVRILRRYAEKIGYA 108 Query: 155 SHFAIADEEQSKKLIE 170 ++F+IAD + LI+ Sbjct: 109 NNFSIADTAEQLTLIK 124 >gi|282882935|ref|ZP_06291540.1| UvrD/REP helicase [Peptoniphilus lacrimalis 315-B] gi|281297346|gb|EFA89837.1| UvrD/REP helicase [Peptoniphilus lacrimalis 315-B] Length = 613 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T+ ++L+ A V A G+GKT IL+ R L L+ +L +T +KAA EMS Sbjct: 4 TEKQKLVTLHRDGPALVLAVPGAGKTTILLHRTLNLIKTGVDAKRILTITFSKAATNEMS 63 Query: 80 HR 81 R Sbjct: 64 KR 65 >gi|326319149|ref|YP_004236821.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375985|gb|ADX48254.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 688 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ ++ RL+ P + +T T AAAEM R +I Sbjct: 22 VLAGAGSGKTRVITMKIGRLIETGLEPRRIAAITFTNKAAAEMRERAQHLI 72 >gi|240129046|ref|ZP_04741707.1| UvrD [Neisseria gonorrhoeae SK-93-1035] gi|268687424|ref|ZP_06154286.1| DNA helicase II [Neisseria gonorrhoeae SK-93-1035] gi|268627708|gb|EEZ60108.1| DNA helicase II [Neisseria gonorrhoeae SK-93-1035] Length = 735 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|254506751|ref|ZP_05118891.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus 16] gi|219550332|gb|EED27317.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus 16] Length = 1194 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 23/133 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT + LRLLL + T +L +T T+AA AE+ R+ Sbjct: 11 IEASAGTGKTFTIAGLYLRLLLGHGSSETQHQTPLTVDQILVVTFTEAATAELRDRIRAR 70 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + A D ++ + +I D +A ++L+ V TIH F Sbjct: 71 IHDARLAFARGQTHDPVIQPLLEEI-------DDHKQAANILLQAERQMDEAAVYTIHGF 123 Query: 140 CEAIMQQFPLEAN 152 C+ ++ Q E+ Sbjct: 124 CQRMLTQNAFESG 136 >gi|194100011|ref|YP_002003150.1| UvrD [Neisseria gonorrhoeae NCCP11945] gi|193935301|gb|ACF31125.1| UvrD [Neisseria gonorrhoeae NCCP11945] Length = 735 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|167039196|ref|YP_001662181.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X514] gi|300913209|ref|ZP_07130526.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X561] gi|307723777|ref|YP_003903528.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X513] gi|166853436|gb|ABY91845.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X514] gi|300889894|gb|EFK85039.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X561] gi|307580838|gb|ADN54237.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X513] Length = 711 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A AGSGKT +L R+ L+ PS +L +T T AA EM RV +++ L Sbjct: 27 AGAGSGKTRVLTHRIAYLIKEKKISPSNILAITFTNKAAEEMKTRVEDLLGYIGDL 82 >gi|59802078|ref|YP_208790.1| hypothetical protein NGO1757 [Neisseria gonorrhoeae FA 1090] gi|240017454|ref|ZP_04723994.1| UvrD [Neisseria gonorrhoeae FA6140] gi|240118830|ref|ZP_04732892.1| UvrD [Neisseria gonorrhoeae PID1] gi|260439632|ref|ZP_05793448.1| UvrD [Neisseria gonorrhoeae DGI2] gi|268604542|ref|ZP_06138709.1| DNA helicase II [Neisseria gonorrhoeae PID1] gi|291042871|ref|ZP_06568612.1| DNA helicase II [Neisseria gonorrhoeae DGI2] gi|293398115|ref|ZP_06642320.1| DNA helicase II [Neisseria gonorrhoeae F62] gi|59718973|gb|AAW90378.1| putative DNA helicase II [Neisseria gonorrhoeae FA 1090] gi|268588673|gb|EEZ53349.1| DNA helicase II [Neisseria gonorrhoeae PID1] gi|291013305|gb|EFE05271.1| DNA helicase II [Neisseria gonorrhoeae DGI2] gi|291611378|gb|EFF40448.1| DNA helicase II [Neisseria gonorrhoeae F62] Length = 735 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|312870767|ref|ZP_07730873.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 3008A-a] gi|311093643|gb|EFQ51981.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 3008A-a] Length = 742 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L +R+ L+ P +L +T T AA+EM RV +++ Sbjct: 27 VVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLD------- 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 S A + ++ T HA C I++++ + Sbjct: 80 --------------------SDADSIWMS-----------TFHALCVRILRRYAEKIGYA 108 Query: 155 SHFAIADEEQSKKLIE 170 ++F+IAD + LI+ Sbjct: 109 NNFSIADTAEQLTLIK 124 >gi|308125359|ref|ZP_07663372.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|308113235|gb|EFO50775.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] Length = 738 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 + A G+GKT LV+RV LL P +L LT + AA EM+ R+ Sbjct: 214 LEAGPGTGKTQTLVKRVEGLLDEGVDPRRILILTFSNKAAGEMAERL 260 >gi|228949915|ref|ZP_04112110.1| UvrD/REP helicase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809766|gb|EEM56192.1| UvrD/REP helicase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 1028 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 33/171 (19%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 T + ++A AG+GKT++++ R+ LL ++ +T T A+ EM R Sbjct: 316 TDNLMITAGAGTGKTYVMIDRIFYLLEKVGITLKDIIMVTFTNASTNEMKER-------- 367 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 L ++LS + K+ G K ++L E +++ TIHAF ++++ Q Sbjct: 368 --LQKKLLS--MFKLTG---------KTKYLYFA--EEVKNIQISTIHAFSKSVLTQLAH 412 Query: 150 EANITSHFAIADEEQSK-----KLIEEAKKSTLASIMLDNNEELKKAFYEI 195 E + + ++K KL E + A +++D L FYE+ Sbjct: 413 EIGFGRNLKVRSFIKTKSDILEKLANEFFQKHPAKVLVD----LNLKFYEV 459 >gi|227494729|ref|ZP_03925045.1| ATP-dependent DNA helicase [Actinomyces coleocanis DSM 15436] gi|226831729|gb|EEH64112.1| ATP-dependent DNA helicase [Actinomyces coleocanis DSM 15436] Length = 868 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 39/141 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ LL A +L +T T AAAEM RV ++ Sbjct: 72 VIAGAGSGKTRVLTHRIAYLLQTGRARAGEILAITFTNKAAAEMRERVANLVG------- 124 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +AR + V T H+ C I+++ A + Sbjct: 125 --------------------PQARRMW-----------VFTFHSACVRILREQYQAAGLR 153 Query: 155 SHFAIADEEQSKKLIEEAKKS 175 S F I D S++LI K+ Sbjct: 154 SSFTIYDAADSQRLITLVSKN 174 >gi|119899502|ref|YP_934715.1| DNA helicase II [Azoarcus sp. BH72] gi|119671915|emb|CAL95829.1| DNA helicase II [Azoarcus sp. BH72] Length = 739 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 P++ A + A AGSGKT +L R+ L+ + A P+ +L +T T AA EM R+ ++ Sbjct: 19 PSQHALILAGAGSGKTRVLTTRIAWLVQSGQASPAEILAVTFTNKAAKEMHARLAAML 76 >gi|33152168|ref|NP_873521.1| DNA-dependent helicase II [Haemophilus ducreyi 35000HP] gi|33148390|gb|AAP95910.1| DNA helicase II [Haemophilus ducreyi 35000HP] Length = 729 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 35/137 (25%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 S P + V A AGSGKT +L R+ L+ + + +++L +T T AAAEM +R+ + Sbjct: 19 SAPLGNYLVLAGAGSGKTRVLTHRIAWLMRVEHISEASILAVTFTNKAAAEMRNRIEYTL 78 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + MS L G+ V T H+ +++ Sbjct: 79 S--------------------------MSSQHRLF--------GMWVGTFHSIAHRLLRS 104 Query: 147 FPLEANITSHFAIADEE 163 L+AN+ F I D E Sbjct: 105 HYLDANLPQDFQIMDTE 121 >gi|118580949|ref|YP_902199.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379] gi|118503659|gb|ABL00142.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379] Length = 672 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 11/85 (12%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLE---------IIT 87 A AGSGKT ++ R++ L+ P+ +L +T T AA EM RV II+ Sbjct: 23 AGAGSGKTQVITTRIVHLIKDRQVPAENILAVTFTNKAAREMRERVASMAGKSSEGIIIS 82 Query: 88 AWSHLSDEILSAEITKIQGKKPNKS 112 + L IL +I + G KPN S Sbjct: 83 TFHSLGVRILRRDIRSL-GFKPNFS 106 >gi|325137063|gb|EGC59659.1| DNA helicase II [Neisseria meningitidis M0579] gi|325202934|gb|ADY98388.1| DNA helicase II [Neisseria meningitidis M01-240149] gi|325207267|gb|ADZ02719.1| DNA helicase II [Neisseria meningitidis NZ-05/33] Length = 735 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|296454009|ref|YP_003661152.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301] gi|296183440|gb|ADH00322.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301] Length = 897 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ +L A PS +L +T T AAAEM R+ +I Sbjct: 36 IGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAAEMRERLGSLI 87 >gi|290969003|ref|ZP_06560538.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Megasphaera genomosp. type_1 str. 28L] gi|290780959|gb|EFD93552.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Megasphaera genomosp. type_1 str. 28L] Length = 869 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AG+GKT IL R+ +L A +LCLT T A E+ HR+ E+I Sbjct: 24 LQAPAGTGKTAILAHRIAYILACRRAREKEILCLTFTNRACKELQHRLQELI 75 >gi|229917962|ref|YP_002886608.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sp. AT1b] gi|229469391|gb|ACQ71163.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sp. AT1b] Length = 738 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L RV L+ A P +L +T T AA EM R+ ++ Sbjct: 29 IMAGAGSGKTRVLTHRVAYLMAAKQVAPWNILAITFTNKAAREMKDRIARLVGG 82 >gi|170751333|ref|YP_001757593.1| UvrD/REP helicase [Methylobacterium radiotolerans JCM 2831] gi|170657855|gb|ACB26910.1| UvrD/REP helicase [Methylobacterium radiotolerans JCM 2831] Length = 797 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ L+ A P +L +T T AA EM HR+ +I Sbjct: 55 VLAGAGTGKTRVLTTRIAHLIATGRARPFDILAVTFTNKAAREMKHRIGALI 106 >gi|168184157|ref|ZP_02618821.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf] gi|182672739|gb|EDT84700.1| helicase, UvrD/REP/exonuclease family [Clostridium botulinum Bf] Length = 855 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 44/138 (31%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 ++AG+GKT L R+ ++ N A +LCLT T A EM +++E + Sbjct: 25 SSAGTGKTKTLSMRIGNIIAKNLALGEQILCLTFTNRACKEMKEKIIETV---------- 74 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK--VQTIHAFC-EAIMQQFPLEANI 153 GK+ GLK V+T H+FC + I ++ +I Sbjct: 75 ---------GKE---------------------GLKVTVKTFHSFCFDVIKKEAKKNTDI 104 Query: 154 TSHFAIADEEQSKKLIEE 171 + F I DEE +K++I E Sbjct: 105 SFDFTIYDEEYTKEIISE 122 >gi|15901017|ref|NP_345621.1| exonuclease RexA [Streptococcus pneumoniae TIGR4] gi|15903084|ref|NP_358634.1| exonuclease RexA [Streptococcus pneumoniae R6] gi|116515444|ref|YP_816490.1| exonuclease RexA [Streptococcus pneumoniae D39] gi|81531934|sp|Q97QP9|ADDA_STRPN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA; AltName: Full=Exonuclease RexA gi|81588100|sp|Q8DPR6|ADDA_STRR6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|122278624|sp|Q04KF8|ADDA_STRP2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|14972629|gb|AAK75261.1| exonuclease RexA [Streptococcus pneumoniae TIGR4] gi|15458659|gb|AAK99844.1| First subunit of major exonuclease [Streptococcus pneumoniae R6] gi|116076020|gb|ABJ53740.1| exonuclease RexA [Streptococcus pneumoniae D39] Length = 1216 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 20/136 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKIS-------- 96 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 KIQ D+ +HL + + P + T+ +F + + + +I Sbjct: 97 ------KKIQ----ETDDVDLKQHLGRQLADLPNA-AIGTMDSFTQKFLGKHGYLLDIAP 145 Query: 156 HFAIADEEQSKKLIEE 171 +F I + QS++LI E Sbjct: 146 NFRIL-QNQSEQLILE 160 >gi|316933463|ref|YP_004108445.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1] gi|315601177|gb|ADU43712.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1] Length = 1133 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 38/136 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A G+GKT L+ RV LL P +L LT + AA EM+ R+ Sbjct: 214 LEAGPGTGKTQTLIARVEGLLEEGIDPRRILLLTFSNKAAGEMAERIAR----------- 262 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 K+P E + + T HAF I+++F E ++ Sbjct: 263 -----------KRP----------------EAAAAMWIGTFHAFGLDIIRRFHAELGLSK 295 Query: 156 HFAIADEEQSKKLIEE 171 + D ++ +L+EE Sbjct: 296 DPRMMDRTEAVELLEE 311 >gi|258647140|ref|ZP_05734609.1| ATP-dependent DNA helicase PcrA [Prevotella tannerae ATCC 51259] gi|260853104|gb|EEX72973.1| ATP-dependent DNA helicase PcrA [Prevotella tannerae ATCC 51259] Length = 794 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +V LL P +L LT T AA EM R+ +++ Sbjct: 23 IIAGAGSGKTRVLTYKVAYLLQNGYQPWEILALTFTNKAAREMRERIAQLV 73 >gi|111657164|ref|ZP_01407943.1| hypothetical protein SpneT_02001617 [Streptococcus pneumoniae TIGR4] Length = 1177 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 20/136 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKIS-------- 96 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 KIQ D+ +HL + + P + T+ +F + + + +I Sbjct: 97 ------KKIQ----ETDDVDLKQHLGRQLADLPNA-AIGTMDSFTQKFLGKHGYLLDIAP 145 Query: 156 HFAIADEEQSKKLIEE 171 +F I + QS++LI E Sbjct: 146 NFRIL-QNQSEQLILE 160 >gi|325913324|ref|ZP_08175692.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 60-B] gi|325477427|gb|EGC80571.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 60-B] Length = 742 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L +R+ L+ P +L +T T AA+EM RV +++ Sbjct: 27 VVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLD------- 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 S A + ++ T HA C I++++ + Sbjct: 80 --------------------SDADSIWMS-----------TFHALCVRILRRYAEKIGYA 108 Query: 155 SHFAIADEEQSKKLIE 170 ++F+IAD + LI+ Sbjct: 109 NNFSIADTAEQLTLIK 124 >gi|322375244|ref|ZP_08049757.1| exonuclease RexA [Streptococcus sp. C300] gi|321279507|gb|EFX56547.1| exonuclease RexA [Streptococcus sp. C300] Length = 562 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ +D+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISQQIQETDD 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|307637600|gb|ADN80050.1| ATP-dependent DNA helicase [Helicobacter pylori 908] gi|325997789|gb|ADZ49997.1| ATP-dependent DNA helicase [Helicobacter pylori 2017] Length = 678 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 4/59 (6%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AG+GKT +V R+L LL P +L LT T A+ EM RV +S LS +I Sbjct: 26 ASAGTGKTSTIVGRILHLLNNGIKPEEILLLTFTNKASNEMIARV----AKYSKLSSKI 80 >gi|259501107|ref|ZP_05744009.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners DSM 13335] gi|315653835|ref|ZP_07906751.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners ATCC 55195] gi|259167801|gb|EEW52296.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners DSM 13335] gi|315488531|gb|EFU78177.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners ATCC 55195] Length = 744 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L +R+ L+ P +L +T T AA+EM RV +++ Sbjct: 29 VVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLD------- 81 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 S A + ++ T HA C I++++ + Sbjct: 82 --------------------SDADSIWMS-----------TFHALCVRILRRYAEKIGYA 110 Query: 155 SHFAIADEEQSKKLIE 170 ++F+IAD + LI+ Sbjct: 111 NNFSIADTAEQLTLIK 126 >gi|302877434|ref|YP_003845998.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2] gi|302580223|gb|ADL54234.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2] Length = 723 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 L+S QL A + P +SA + A AGSGKT +L R+ L+ A P +L +T T Sbjct: 15 LLSGLNPPQLQAVTLPRQSALILAGAGSGKTRVLTTRIAYLISTGAVSPHGILAVTFTNK 74 Query: 74 AAAEMSHRV 82 AA EM R+ Sbjct: 75 AAKEMVTRL 83 >gi|27381672|ref|NP_773201.1| DNA helicase II [Bradyrhizobium japonicum USDA 110] gi|27354841|dbj|BAC51826.1| DNA helicase II [Bradyrhizobium japonicum USDA 110] Length = 872 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A P+ +L +T T AA EM HR+ +++ Sbjct: 71 VLAGAGTGKTRVLTTRIAHILSQGRARPAEILSVTFTNKAAREMKHRLGQML 122 >gi|83749766|ref|ZP_00946741.1| ATP-dependent DNA helicase pcrA [Ralstonia solanacearum UW551] gi|83723556|gb|EAP70759.1| ATP-dependent DNA helicase pcrA [Ralstonia solanacearum UW551] Length = 710 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 52/134 (38%), Gaps = 22/134 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT L RV L+ A P +L LT ++ AA+E+S R ++ S Sbjct: 45 VLAGAGSGKTQTLGWRVAHLVAHGADPQRILLLTFSRRAASELSSRAGHLLARAMQGSTG 104 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 SA T Q T L G T H +++++ + Sbjct: 105 TRSAAGTTYQ-----------------TALPWAG-----TFHGIGARLLREYAERIGLAP 142 Query: 156 HFAIADEEQSKKLI 169 F I D S L+ Sbjct: 143 DFTIHDRSDSADLL 156 >gi|329929647|ref|ZP_08283344.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. HGF5] gi|328935973|gb|EGG32428.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. HGF5] Length = 673 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D + + +Q A + T + A AGSGKT +L R+ L+ A P ++L +T T Sbjct: 8 DAVRRLNPQQRQAVEATDGPLLIMAGAGSGKTRVLTHRIAYLIATRKAAPWSILAITFTN 67 Query: 73 AAAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 68 KAAREMQERVSKLV 81 >gi|327470754|gb|EGF16210.1| exonuclease RexA [Streptococcus sanguinis SK330] Length = 1224 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 VSA+AGSGKT ++VQR++ +L L T T AA E+ R+ Sbjct: 45 VSASAGSGKTFVMVQRIIDQILRGVAVRQLFISTFTVKAAGELKERL 91 >gi|254670947|emb|CBA07597.1| DNA helicase II [Neisseria meningitidis alpha153] Length = 735 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|126179428|ref|YP_001047393.1| UvrD/REP helicase [Methanoculleus marisnigri JR1] gi|125862222|gb|ABN57411.1| UvrD/REP helicase [Methanoculleus marisnigri JR1] Length = 911 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 5/63 (7%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL-S 93 + A AG+GKT L +R++ LLL PS ++ T T+ AA M RV E + HL Sbjct: 36 IIAGAGAGKTETLTRRIVYLLLVQQVEPSAIVAFTFTEKAAQSMKSRVYERV---KHLGG 92 Query: 94 DEI 96 DEI Sbjct: 93 DEI 95 >gi|119945195|ref|YP_942875.1| exodeoxyribonuclease V, beta subunit [Psychromonas ingrahamii 37] gi|119863799|gb|ABM03276.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Psychromonas ingrahamii 37] Length = 1226 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 36/139 (25%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN----AHPSTL-----LCLTHTKAAAAEMSHRVLEII 86 + A+AG+GKT+ + +RLLL + AH L L +T T+AA AE+ +R+ E Sbjct: 32 IEASAGTGKTYTIASLFIRLLLGHGEQAAHQGPLTVDQILVVTFTEAATAELRNRIRE-- 89 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK-------------V 133 I + IQG +SD + LL +++ ++ + Sbjct: 90 --------RIQDVRLDFIQG----ESDNPFTQSLLKEVVDHQVAIRLLRFAELQMDEAAI 137 Query: 134 QTIHAFCEAIMQQFPLEAN 152 TIH FC+ ++ Q E+ Sbjct: 138 FTIHGFCQRMLMQNAFESG 156 >gi|315644888|ref|ZP_07898017.1| UvrD/REP helicase [Paenibacillus vortex V453] gi|315279830|gb|EFU43131.1| UvrD/REP helicase [Paenibacillus vortex V453] Length = 819 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEI 85 A AGSGKT +LV R L+ A P+++L +T + AAAEM R++ + Sbjct: 72 AGAGSGKTSVLVSRTGYLIAAQRVDPASILLVTFSSKAAAEMKERIMAL 120 >gi|254776585|ref|ZP_05218101.1| hypothetical protein MaviaA2_18221 [Mycobacterium avium subsp. avium ATCC 25291] Length = 1139 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPS 63 S +E + + L T+ + + + P V A AG+GKT + RV+ L+AN AHP Sbjct: 49 SPRELACALALFPPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLIANGYAHPG 107 Query: 64 TLLCLTHTKAAAAEMSHRV 82 +L LT T+ AA ++ RV Sbjct: 108 QVLGLTFTRKAAGQLLRRV 126 >gi|282599796|ref|ZP_05971895.2| helicase IV [Providencia rustigianii DSM 4541] gi|282567853|gb|EFB73388.1| helicase IV [Providencia rustigianii DSM 4541] Length = 692 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 4/83 (4%) Query: 1 MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59 + +++ F +H E+ L S+ L + + V A AGSGKT +LV R LLL Sbjct: 190 LTHYSDFFQHIESSPL---NNSQSLSVINGEDNVLVLAGAGSGKTSVLVARAGWLLLRGL 246 Query: 60 AHPSTLLCLTHTKAAAAEMSHRV 82 A P +L L + AA EM+ R+ Sbjct: 247 AKPEQILLLAFGRKAAEEMNERI 269 >gi|209694270|ref|YP_002262198.1| exodeoxyribonuclease V beta chain [Aliivibrio salmonicida LFI1238] gi|208008221|emb|CAQ78366.1| exodeoxyribonuclease V beta chain [Aliivibrio salmonicida LFI1238] Length = 1208 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 23/136 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT + LRLLL + ++ +L +T T+AA AE+ R+ Sbjct: 23 IEASAGTGKTFTIASLYLRLLLGHGDENSRHSEELTVDKILVVTFTEAATAELRERIRAK 82 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNK---------SDMSKARHLLITILETPGGLKVQTI 136 I H + + + K K + SD A H+L+ + + TI Sbjct: 83 I----HDARLAFARAVHKSDYKSGDPVIDPLLAAISDHKSAAHILLNAERSMDEASIFTI 138 Query: 137 HAFCEAIMQQFPLEAN 152 H FC+ ++ Q E+ Sbjct: 139 HGFCQRMLTQNAFESG 154 >gi|15829169|ref|NP_326529.1| ATP-dependent helicase PcrA [Mycoplasma pulmonis UAB CTIP] gi|14090113|emb|CAC13871.1| ATP-DEPENDENT HELICASE PCRA [Mycoplasma pulmonis] Length = 734 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 42/157 (26%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKA 73 +L + K + P R + A AGSGKT ++ ++ L+ P +L LT T Sbjct: 4 NLNQRQKEAVVYTKGPLR---IIAGAGSGKTRVITSKIAYLIEHEKIAPWKILGLTFTNK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R L++I KA H +++ Sbjct: 61 AAREMKERALKMIGP---------------------------KASH-----------VEL 82 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H+ C I++Q + +F I DE K++++ Sbjct: 83 STFHSLCNVILKQDIDKIGYPKNFEIVDESDKKQILK 119 >gi|119356509|ref|YP_911153.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeobacteroides DSM 266] gi|119353858|gb|ABL64729.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeobacteroides DSM 266] Length = 734 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++ R+ L+ N + S +L LT T AA EM HRV Sbjct: 25 VLAGAGSGKTRVITYRIA-WLIKNGYASAKNILALTFTNKAAGEMRHRV 72 >gi|332075466|gb|EGI85935.1| recombination helicase AddA [Streptococcus pneumoniae GA41301] Length = 1216 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 20/136 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKIS-------- 96 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 KIQ D+ +HL + + P + T+ +F + + + +I Sbjct: 97 ------KKIQ----ETDDVDLKQHLGRQLADLPNA-AIGTMDSFTQKFLGKHGYLLDIAP 145 Query: 156 HFAIADEEQSKKLIEE 171 +F I + QS++LI E Sbjct: 146 NFRIL-QNQSEQLILE 160 >gi|329920500|ref|ZP_08277232.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN 1401G] gi|328936176|gb|EGG32629.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN 1401G] Length = 742 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L +R+ L+ P +L +T T AA+EM RV +++ Sbjct: 27 VVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLD------- 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 S A + ++ T HA C I++++ + Sbjct: 80 --------------------SDADSIWMS-----------TFHALCVRILRRYAEKIGYA 108 Query: 155 SHFAIADEEQSKKLIE 170 ++F+IAD + LI+ Sbjct: 109 NNFSIADTAEQLTLIK 124 >gi|325205321|gb|ADZ00774.1| DNA helicase II [Neisseria meningitidis M04-240196] Length = 735 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|325130964|gb|EGC53691.1| DNA helicase II [Neisseria meningitidis OX99.30304] Length = 735 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|319956827|ref|YP_004168090.1| uvrd/rep helicase [Nitratifractor salsuginis DSM 16511] gi|319419231|gb|ADV46341.1| UvrD/REP helicase [Nitratifractor salsuginis DSM 16511] Length = 685 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A+ P + A+AG+GKT +V R+ LL P +L LT T AA EM R+ Sbjct: 14 ATAPFGHNLIIASAGTGKTSTIVGRIAYLLQKGVPPEKILLLTFTNKAAGEMVTRL 69 >gi|300021793|ref|YP_003754404.1| UvrD/REP helicase [Hyphomicrobium denitrificans ATCC 51888] gi|299523614|gb|ADJ22083.1| UvrD/REP helicase [Hyphomicrobium denitrificans ATCC 51888] Length = 818 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AG+GKT +L R+ +L A+PS +L +T T AA EM R+ Sbjct: 83 VLAGAGTGKTRVLTTRIAHILATGKAYPSQILAVTFTNKAAREMRDRI 130 >gi|254674097|emb|CBA09881.1| DNA helicase II [Neisseria meningitidis alpha275] Length = 735 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|227545941|ref|ZP_03975990.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213575|gb|EEI81424.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 910 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ +L A PS +L +T T AAAEM R+ +I Sbjct: 46 IGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAAEMRERLGSLI 97 >gi|221201441|ref|ZP_03574480.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans CGD2M] gi|221208004|ref|ZP_03581010.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans CGD2] gi|221214000|ref|ZP_03586973.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans CGD1] gi|221166177|gb|EED98650.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans CGD1] gi|221172189|gb|EEE04630.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans CGD2] gi|221178709|gb|EEE11117.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans CGD2M] Length = 1236 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 7/118 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 26 IEASAGTGKTWNICALYVRLLLEQDLGADQILVVTFTKAATAELHERIRGRLAQLAHALD 85 Query: 95 ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + A++ + D + A + L + TIHAFC+ +Q+ Sbjct: 86 TGDDGGDPFVAKLFETTLAAGGPLDTATAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143 >gi|83590844|ref|YP_430853.1| ATP-dependent DNA helicase PcrA [Moorella thermoacetica ATCC 39073] gi|83573758|gb|ABC20310.1| ATP-dependent DNA helicase PcrA [Moorella thermoacetica ATCC 39073] Length = 729 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 26/47 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L RV L+ P +L +T T AA EM R+ Sbjct: 28 VLAGAGSGKTRVLTYRVAALIQEGVRPENILAVTFTNKAAQEMKERL 74 >gi|309803805|ref|ZP_07697890.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV 11V1-d] gi|312873066|ref|ZP_07733125.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2062A-h1] gi|308164039|gb|EFO66301.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV 11V1-d] gi|311091299|gb|EFQ49684.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2062A-h1] Length = 742 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L +R+ L+ P +L +T T AA+EM RV +++ Sbjct: 27 VVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLD------- 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 S A + ++ T HA C I++++ + Sbjct: 80 --------------------SDADSIWMS-----------TFHALCVRILRRYAEKIGYA 108 Query: 155 SHFAIADEEQSKKLIE 170 ++F+IAD + LI+ Sbjct: 109 NNFSIADTAEQLTLIK 124 >gi|304389059|ref|ZP_07371104.1| excision endonuclease subunit UvrD [Neisseria meningitidis ATCC 13091] gi|304336989|gb|EFM03178.1| excision endonuclease subunit UvrD [Neisseria meningitidis ATCC 13091] Length = 735 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|302190445|ref|ZP_07266699.1| superfamily I DNA/RNA helicase [Lactobacillus iners AB-1] Length = 742 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L +R+ L+ P +L +T T AA+EM RV +++ Sbjct: 27 VVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLD------- 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 S A + ++ T HA C I++++ + Sbjct: 80 --------------------SDADSIWMS-----------TFHALCVRILRRYAEKIGYA 108 Query: 155 SHFAIADEEQSKKLIE 170 ++F+IAD + LI+ Sbjct: 109 NNFSIADTAEQLTLIK 124 >gi|239813421|ref|YP_002942331.1| UvrD/REP helicase [Variovorax paradoxus S110] gi|239799998|gb|ACS17065.1| UvrD/REP helicase [Variovorax paradoxus S110] Length = 712 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 53/145 (36%), Gaps = 30/145 (20%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 L A R V A AGSGKT L RV L+ LL LT ++ AA EM R + Sbjct: 48 LTAGRDERPLLVIAGAGSGKTSTLAHRVAHLIAGGVDLQRLLLLTFSRRAAQEMERRAGQ 107 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 ++ A + ++ KP P T H ++ Sbjct: 108 VL------------ARVLGLKSDKP------------------PALPWAGTFHGIGARLL 137 Query: 145 QQFPLEANITSHFAIADEEQSKKLI 169 +++ + HF I D ++ L+ Sbjct: 138 REYAAHIGLNDHFTIHDRGDAEDLM 162 >gi|197302046|ref|ZP_03167107.1| hypothetical protein RUMLAC_00774 [Ruminococcus lactaris ATCC 29176] gi|197298855|gb|EDY33394.1| hypothetical protein RUMLAC_00774 [Ruminococcus lactaris ATCC 29176] Length = 767 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ L+ N +P +L +T T AA EM RV ++ S Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIEERNVNPWNILAITFTNKAAGEMRERVDSLVGFGSE--- 80 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + V T H+ C I+++F Sbjct: 81 -----------------------------------SIWVSTFHSMCVRILRRFIDRLGYD 105 Query: 155 SHFAIADEEQSKKLIEEAKK 174 + F I D + K L++E K Sbjct: 106 NRFTIYDTDDQKTLMKEVCK 125 >gi|7414502|emb|CAB86224.1| putative DNA helicase [Prochlorococcus marinus subsp. pastoris str. NATL2] Length = 304 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 28/187 (14%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT L R+ L+ PS++L +T T AA EM R LE+ + Sbjct: 31 AGAGSGKTRALTHRIAHLITEYKVDPSSILAVTFTNKAAREMKDR-LEL----------L 79 Query: 97 LSAEITKIQGKKPNKS-DMSKARHLLITI-LETPGGLKVQTIHAFCEAIMQ------QFP 148 L+ ++ + KP + +++ R + I E L + T HA +++ + P Sbjct: 80 LAKRLSSLTHGKPWTALQVAEQREIRNRIHREISRELWIGTFHALFSRLLRFDIDKFKDP 139 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILEISNDEDIETL 207 T F+I DE ++ LI+E + LD E KK + I N + L Sbjct: 140 EGLTWTKQFSIYDETDAQSLIKEI---VTQDLQLDPKRFEPKKVRWAISNAKN----QCL 192 Query: 208 ISDIISN 214 + D +SN Sbjct: 193 LPDDLSN 199 >gi|313159744|gb|EFR59101.1| putative ATP-dependent helicase PcrA [Alistipes sp. HGB5] Length = 858 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 29/51 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ ++ P +L LT T AA +M R+ ++I Sbjct: 42 IIAGAGSGKTRVLTSRIAYMIEQGVAPFNILALTFTNKAAEQMRERIAQMI 92 >gi|291461061|ref|ZP_06026707.2| ATP-dependent DNA helicase PcrA [Fusobacterium periodonticum ATCC 33693] gi|291379194|gb|EFE86712.1| ATP-dependent DNA helicase PcrA [Fusobacterium periodonticum ATCC 33693] Length = 739 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 39/145 (26%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85 AS S + A AGSGKT + R+ ++ P ++L +T T AA EM RV Sbjct: 19 ASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVTFTNKAAKEMRERV--- 75 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 E L E+ K + T H+F +++ Sbjct: 76 ---------EDLVGEVAK--------------------------SCTISTFHSFGMRLLR 100 Query: 146 QFPLEANITSHFAIADEEQSKKLIE 170 + E +F I D + K++I+ Sbjct: 101 MYAAEVGYNPNFTIYDTDDQKRIIK 125 >gi|166153980|ref|YP_001654098.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 434/Bu] gi|166154855|ref|YP_001653110.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335177|ref|ZP_07223421.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis L2tet1] gi|165929968|emb|CAP03451.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis 434/Bu] gi|165930843|emb|CAP06405.1| exodeoxyribonuclease V beta chain [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 1026 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 8/120 (6%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVLEIITAWSHL 92 ++ A+AG+GKT + Q +LR LL + T +L +T T AA E+ R+ + L Sbjct: 18 FLEASAGTGKTFTIEQVILRSLLEGSIEQTKNILVVTFTNAATNELKLRIQASLKQALSL 77 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITI---LETPGGLKVQTIHAFCEAIMQQ-FP 148 + LS T + S +K + L + I L T + + TIH FC ++Q FP Sbjct: 78 FSQALSHPGTPLPPYI--SSSETKVKQLYMKIRNSLATLDEMNIFTIHGFCRFTLEQHFP 135 >gi|218767076|ref|YP_002341588.1| DNA helicase II [Neisseria meningitidis Z2491] gi|6900436|emb|CAB72035.1| DNA helicase II [Neisseria meningitidis] gi|121051084|emb|CAM07354.1| DNA helicase II [Neisseria meningitidis Z2491] Length = 735 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|154245373|ref|YP_001416331.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] gi|154159458|gb|ABS66674.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] Length = 817 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L RV +L A+PS +L +T T AA EM R+ ++ Sbjct: 60 VLAGAGTGKTRVLTARVAHILSQGRAYPSQILVVTFTNKAAREMKDRIHAMV 111 >gi|312875404|ref|ZP_07735408.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2053A-b] gi|311089067|gb|EFQ47507.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2053A-b] Length = 742 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L +R+ L+ P +L +T T AA+EM RV +++ Sbjct: 27 VVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLD------- 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 S A + ++ T HA C I++++ + Sbjct: 80 --------------------SDADSIWMS-----------TFHALCVRILRRYAEKIGYA 108 Query: 155 SHFAIADEEQSKKLIE 170 ++F+IAD + LI+ Sbjct: 109 NNFSIADTAEQLTLIK 124 >gi|298369602|ref|ZP_06980919.1| DNA helicase II [Neisseria sp. oral taxon 014 str. F0314] gi|298282159|gb|EFI23647.1| DNA helicase II [Neisseria sp. oral taxon 014 str. F0314] Length = 735 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|294102168|ref|YP_003554026.1| UvrD/REP helicase [Aminobacterium colombiense DSM 12261] gi|293617148|gb|ADE57302.1| UvrD/REP helicase [Aminobacterium colombiense DSM 12261] Length = 660 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT +L ++ L+ A P +L +T T AA EM RV ++ A Sbjct: 28 VLAGAGSGKTRVLAHKIAYLIEKGYASPKGILAVTFTNKAAREMGERVQALVGA 81 >gi|225848053|ref|YP_002728216.1| ATP-dependent DNA helicase PcrA [Sulfurihydrogenibium azorense Az-Fu1] gi|225644159|gb|ACN99209.1| ATP-dependent DNA helicase PcrA [Sulfurihydrogenibium azorense Az-Fu1] Length = 700 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 47/156 (30%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ +++ L+ + P +L +T T AA EM RV Sbjct: 27 VLAGAGSGKTKVITHKIMYLVKSLGIPIHRILAITFTNKAAEEMKERV------------ 74 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 K G++P V T H+F ++ + Sbjct: 75 -------EKALGERPQW---------------------VMTFHSFAAKFLRFEAEKVGYD 106 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 +F I DE+ SKKLI++ K L+ NEEL K Sbjct: 107 RNFVIYDEDDSKKLIKKVLKD------LNLNEELIK 136 >gi|218960875|ref|YP_001740650.1| Superfamily I DNA and RNA helicases [Candidatus Cloacamonas acidaminovorans] gi|167729532|emb|CAO80444.1| Superfamily I DNA and RNA helicases [Candidatus Cloacamonas acidaminovorans] Length = 732 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 63/163 (38%), Gaps = 48/163 (29%) Query: 18 SQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75 SQ QL + +D V A AGSGKT L+ R L+ HP +L +T T AA Sbjct: 15 SQLNERQLEVVTDTENPVLVLAGAGSGKTRSLIYRTAYLIKEKQVHPWNILIVTFTNKAA 74 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ R+ +++ P +S L V T Sbjct: 75 RELQERLEKLLNI--------------------PVRS------------------LWVGT 96 Query: 136 IHAFCEAIMQ----QFPLEANITSHFAIADEEQSKKLIEEAKK 174 HA C I++ P AN F+I DE+ K L+++ K Sbjct: 97 FHAICCRILRFESAHLPFNAN----FSIYDEDTQKSLLKKIYK 135 >gi|163758971|ref|ZP_02166057.1| putative ATP-dependent DNA helicase [Hoeflea phototrophica DFL-43] gi|162283375|gb|EDQ33660.1| putative ATP-dependent DNA helicase [Hoeflea phototrophica DFL-43] Length = 840 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AG+GKT +L R+ +L L A PS +L +T T AA EM R+ Sbjct: 76 VLAGAGTGKTRVLTTRIAHILNLGLAFPSQILSVTFTNKAAREMKERI 123 >gi|148656349|ref|YP_001276554.1| UvrD/REP helicase [Roseiflexus sp. RS-1] gi|148568459|gb|ABQ90604.1| ATP-dependent DNA helicase, Rep family [Roseiflexus sp. RS-1] Length = 659 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 L + EQ A + P V A AGSGKT +L R+ L++ + PS +L LT T Sbjct: 8 LFASLNPEQRTAVAAPPGPILVRAGAGSGKTRVLTLRIAYLIVEHGVSPSNILALTFTNK 67 Query: 74 AAAEMSHRVLEI 85 AA EM R+ ++ Sbjct: 68 AAREMRQRLRDM 79 >gi|2909716|gb|AAC12966.1| exonuclease RexA [Lactococcus lactis subsp. cremoris MG1363] Length = 1173 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 28/187 (14%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 ++ VSA+AGSGKT ++ QR++ + L T TK AA+E+ R Sbjct: 19 KNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAASELRMR---------- 68 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 L ++ K + SD +A H L L+ + T+ +F + + + Sbjct: 69 -----LERDLKKA---RQESSDDEEA-HRLTLALQNLSNADIGTMDSFTQKLTKANFNRV 119 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 NI +F I ++ LI + L L +E L IS D+ E LI + Sbjct: 120 NIDPNFRILADQTESDLIRQEVFEQLVESYLSADESLN--------ISKDK-FEKLIKNF 170 Query: 212 ISNRTAL 218 +R L Sbjct: 171 SKDRNIL 177 >gi|325129035|gb|EGC51885.1| DNA helicase II [Neisseria meningitidis N1568] Length = 735 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|226226146|ref|YP_002760252.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27] gi|226089337|dbj|BAH37782.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27] Length = 702 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 38/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A AGSGKT L+ RV L+ P +L LT T+ +A EM R ++ S Sbjct: 44 IVAGAGSGKTRTLIHRVAALIRRGIPPHRILLLTFTRRSAQEMLSRCERLVGPASQ---- 99 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +QG T H ++++F A + + Sbjct: 100 -------SVQGG---------------------------TFHGVAHRLLRRFGPSAGLPA 125 Query: 156 HFAIADEEQSKKLIEEAKKS 175 F I D+ + L+ A+ + Sbjct: 126 DFTILDQSDAGDLMGLARSA 145 >gi|88602638|ref|YP_502816.1| UvrD/REP helicase [Methanospirillum hungatei JF-1] gi|88188100|gb|ABD41097.1| UvrD/REP helicase [Methanospirillum hungatei JF-1] Length = 526 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 37/129 (28%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AG+GKT L ++++ LLL + P++++ T T+ AAA M R+ + + L ++ Sbjct: 36 AGAGAGKTETLTRKIVSLLLVEHVEPASIVAFTFTEKAAANMKSRIYKRV---KELGEDA 92 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANITS 155 L A + G + V TIH FC +++ QF + Sbjct: 93 LCARL---------------------------GEMYVGTIHGFCFHLLEDQFGYGS---- 121 Query: 156 HFAIADEEQ 164 + + DE Q Sbjct: 122 -WGVLDENQ 129 >gi|315613168|ref|ZP_07888078.1| ATP-dependent nuclease subunit A [Streptococcus sanguinis ATCC 49296] gi|315314730|gb|EFU62772.1| ATP-dependent nuclease subunit A [Streptococcus sanguinis ATCC 49296] Length = 1217 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ +D+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISQQIQETDD 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|290967937|ref|ZP_06559487.1| ATP-dependent DNA helicase PcrA [Megasphaera genomosp. type_1 str. 28L] gi|290782076|gb|EFD94654.1| ATP-dependent DNA helicase PcrA [Megasphaera genomosp. type_1 str. 28L] Length = 738 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 ++A AGSGKT +L R+ LL P +L +T T AA EM RV +++ Sbjct: 25 ITAGAGSGKTKVLTCRIAYLLEKGVAPYRILAITFTNKAAKEMRERVEKLV 75 >gi|261749558|ref|YP_003257244.1| putative helicase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497651|gb|ACX84101.1| putative helicase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 707 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++ R++ ++ PS +L LT T AA EM R+ Sbjct: 24 VIAGAGSGKTRVITHRIVHMINNLGIDPSRILALTFTNKAAKEMKMRI 71 >gi|121634106|ref|YP_974351.1| DNA helicase II [Neisseria meningitidis FAM18] gi|120865812|emb|CAM09544.1| DNA helicase II [Neisseria meningitidis FAM18] gi|325131618|gb|EGC54325.1| DNA helicase II [Neisseria meningitidis M6190] gi|325139127|gb|EGC61673.1| DNA helicase II [Neisseria meningitidis ES14902] Length = 735 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|78778691|ref|YP_396803.1| ATP-dependent DNA helicase Rep [Prochlorococcus marinus str. MIT 9312] gi|78712190|gb|ABB49367.1| ATP-dependent DNA helicase, Rep family [Prochlorococcus marinus str. MIT 9312] Length = 802 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 2/54 (3%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT L R+ L+ N+ P +L +T T AA EM R LE++ A Sbjct: 29 VVAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAKEMKAR-LEVLLA 81 >gi|219667567|ref|YP_002458002.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium hafniense DCB-2] gi|219537827|gb|ACL19566.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium hafniense DCB-2] Length = 755 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ P +L +T T AA EM RV ++ Sbjct: 24 ILAGAGSGKTRVLTYRIAHLIAQGVEPWHILAITFTNKAAQEMRDRVYSLV 74 >gi|325135039|gb|EGC57667.1| DNA helicase II [Neisseria meningitidis M13399] Length = 735 Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|296314732|ref|ZP_06864673.1| DNA helicase II [Neisseria polysaccharea ATCC 43768] gi|296838466|gb|EFH22404.1| DNA helicase II [Neisseria polysaccharea ATCC 43768] Length = 735 Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|123967864|ref|YP_001008722.1| UvrD/REP helicase [Prochlorococcus marinus str. AS9601] gi|123197974|gb|ABM69615.1| UvrD/REP helicase [Prochlorococcus marinus str. AS9601] Length = 802 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 2/54 (3%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT L R+ L+ N+ P +L +T T AA EM R LE++ A Sbjct: 29 VVAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAKEMKAR-LEVLLA 81 >gi|56696067|ref|YP_166421.1| DNA helicase II, putative [Ruegeria pomeroyi DSS-3] gi|56677804|gb|AAV94470.1| DNA helicase II, putative [Ruegeria pomeroyi DSS-3] Length = 779 Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ LL+ A P+ +L +T T AA EM +RV Sbjct: 31 AGAGTGKTKALTARIVHLLMTGRARPNEILAVTFTNKAAREMKNRV 76 >gi|56477926|ref|YP_159515.1| ATP-dependent DNA helicase [Aromatoleum aromaticum EbN1] gi|56313969|emb|CAI08614.1| ATP-dependent DNA helicase [Aromatoleum aromaticum EbN1] Length = 740 Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL++ EQL A + P + A V A AGSGKT +L R+ L+ P +L +T T Sbjct: 3 DLLANLNPEQLQAVTLPPQHALVLAGAGSGKTRVLTTRIAWLVQTGQVDPQGVLAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA E+ R+ Sbjct: 63 KAAKELLARL 72 >gi|304384333|ref|ZP_07366744.1| ATP-dependent helicase PcrA [Prevotella marshii DSM 16973] gi|304334649|gb|EFM00931.1| ATP-dependent helicase PcrA [Prevotella marshii DSM 16973] Length = 789 Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 15/118 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT-------- 87 V A AGSGKT +L ++ LL P +L LT T AA EM R+ +++ Sbjct: 26 VIAGAGSGKTRVLTYKIAHLLNNGFEPWHILALTFTNKAATEMKTRIGHLVSMERARYLN 85 Query: 88 --AWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGG----LKVQTIHA 138 + + IL E +I GK+ D + +R L I++ G K T+HA Sbjct: 86 MGTFHSVFSHILRTEAERIGFGKQYTIYDENDSRSLCKVIIKEMGLDDKIYKPATVHA 143 >gi|289435096|ref|YP_003464968.1| DNA helicase, ATP-dependent [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171340|emb|CBH27882.1| DNA helicase, ATP-dependent [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 731 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +L+ EQ A + T + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 5 ELVDGLNPEQKRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 64 Query: 73 AAAAEMSHRVLEIITA 88 AA EM R+ ++ Sbjct: 65 KAAREMKSRIGNLMGG 80 >gi|291549932|emb|CBL26194.1| Superfamily I DNA and RNA helicases [Ruminococcus torques L2-14] Length = 768 Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 39/137 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ L+ +P +L +T T AA EM RV ++ Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIGERGVNPWNILAITFTNKAAEEMRQRVDNLVG------- 76 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 AE + V T H+ C I+++F Sbjct: 77 --FGAE-----------------------------SVWVSTFHSACVRILRRFIDRLGYE 105 Query: 155 SHFAIADEEQSKKLIEE 171 +HF I D + K LI+E Sbjct: 106 NHFTIYDTDDQKTLIKE 122 >gi|28897857|ref|NP_797462.1| putative ATP-dependent DNA helicase [Vibrio parahaemolyticus RIMD 2210633] gi|153838039|ref|ZP_01990706.1| UvrD/REP helicase [Vibrio parahaemolyticus AQ3810] gi|260877018|ref|ZP_05889373.1| UvrD/REP helicase [Vibrio parahaemolyticus AN-5034] gi|260899090|ref|ZP_05907531.1| UvrD/REP helicase [Vibrio parahaemolyticus Peru-466] gi|28806070|dbj|BAC59346.1| putative ATP-dependent DNA helicase [Vibrio parahaemolyticus RIMD 2210633] gi|149748573|gb|EDM59432.1| UvrD/REP helicase [Vibrio parahaemolyticus AQ3810] gi|308089138|gb|EFO38833.1| UvrD/REP helicase [Vibrio parahaemolyticus Peru-466] gi|308093677|gb|EFO43372.1| UvrD/REP helicase [Vibrio parahaemolyticus AN-5034] Length = 1139 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 26/45 (57%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A G+GKT LV+RV LL P +L LT + AA EM+ R+ Sbjct: 216 AGPGTGKTQTLVKRVEGLLDEGVDPRRILILTFSNKAAGEMAERL 260 >gi|326443255|ref|ZP_08217989.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] Length = 1198 Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 48/214 (22%), Positives = 82/214 (38%), Gaps = 41/214 (19%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T AA Sbjct: 17 IPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 76 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E++ RV ++ A +T P++ PG ++ T Sbjct: 77 GELAERV----------RTALVRAGVTDPDAIDPDRP---------------PGEPRIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK-------------STLASIML 182 HAF ++ L + + + +L + + STL +L Sbjct: 112 YHAFAGQLLTDHGLRIGLEPTARLLADATRYQLAAQVLRAAPGPYPALTRSFSTLVGDLL 171 Query: 183 DNNEELKKAFY--EILEISNDEDIETLISDIISN 214 + EL + E+L ++E +ETL S ++N Sbjct: 172 ALDAELSEHLVRPELLAAHDEELLETLASASLTN 205 >gi|325143147|gb|EGC65493.1| DNA helicase II [Neisseria meningitidis 961-5945] gi|325197521|gb|ADY92977.1| DNA helicase II [Neisseria meningitidis G2136] Length = 735 Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|325287669|ref|YP_004263459.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489] gi|324323123|gb|ADY30588.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489] Length = 773 Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 28/50 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT +L R+ L+ P +L LT T AA EM R+ +I Sbjct: 25 VIAGAGSGKTRVLTYRIAYLIQQGVDPYNILSLTFTNKAAREMKVRIADI 74 >gi|294814880|ref|ZP_06773523.1| Putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] gi|294327479|gb|EFG09122.1| Putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] Length = 1200 Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 48/214 (22%), Positives = 82/214 (38%), Gaps = 41/214 (19%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T AA Sbjct: 19 IPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 78 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E++ RV ++ A +T P++ PG ++ T Sbjct: 79 GELAERV----------RTALVRAGVTDPDAIDPDRP---------------PGEPRIST 113 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK-------------STLASIML 182 HAF ++ L + + + +L + + STL +L Sbjct: 114 YHAFAGQLLTDHGLRIGLEPTARLLADATRYQLAAQVLRAAPGPYPALTRSFSTLVGDLL 173 Query: 183 DNNEELKKAFY--EILEISNDEDIETLISDIISN 214 + EL + E+L ++E +ETL S ++N Sbjct: 174 ALDAELSEHLVRPELLAAHDEELLETLASASLTN 207 >gi|218296511|ref|ZP_03497239.1| UvrD/REP helicase [Thermus aquaticus Y51MC23] gi|218243053|gb|EED09585.1| UvrD/REP helicase [Thermus aquaticus Y51MC23] Length = 701 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 A V A AGSGKT +V RV L+ PS +L +T T AA EM R+ ++ Sbjct: 29 PALVVAGAGSGKTRTVVHRVAYLIARRGVFPSEILAVTFTNKAAEEMKARLKAMVRGAGE 88 Query: 92 L 92 L Sbjct: 89 L 89 >gi|308388456|gb|ADO30776.1| DNA helicase II [Neisseria meningitidis alpha710] Length = 735 Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|238917480|ref|YP_002930997.1| hypothetical protein EUBELI_01558 [Eubacterium eligens ATCC 27750] gi|238872840|gb|ACR72550.1| Hypothetical protein EUBELI_01558 [Eubacterium eligens ATCC 27750] Length = 822 Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats. Identities = 48/197 (24%), Positives = 74/197 (37%), Gaps = 50/197 (25%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ L+ P ++ +T T AA EM RV Sbjct: 23 IIAGAGSGKTRVLTNRIAYLIEECGVDPYNIMAITFTNKAAREMKERV------------ 70 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E T QG G + V T H+ C I++++ Sbjct: 71 -----ETTVAQGA---------------------GAVWVSTFHSTCVRILRRYIDRIGYD 104 Query: 155 SHFAIADEEQSKKLIEE-AKKSTLASIMLDN----------NEELKKAFYEILEISNDED 203 ++F I D + K +I++ KK + + ML +ELK LE ND + Sbjct: 105 NNFTIYDTDDQKSVIKDICKKMNIDTKMLKERAIMSKISSAKDELKTPDEFELEAGNDYN 164 Query: 204 IETLISDIISNRTALKL 220 + + + LKL Sbjct: 165 LRRIAGVYREYQKTLKL 181 >gi|15613211|ref|NP_241514.1| ATP-dependent DNA helicase [Bacillus halodurans C-125] gi|10173262|dbj|BAB04367.1| ATP-dependent DNA helicase [Bacillus halodurans C-125] Length = 747 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT +L R+ LL P +L +T T AA EM RV +++ ++D+I Sbjct: 39 AGAGSGKTRVLTHRIAYLLREKGVAPWNVLAITFTNKAAREMKDRVAQLV---GPIADDI 95 >gi|163938296|ref|YP_001643180.1| ATP-dependent DNA helicase PcrA [Bacillus weihenstephanensis KBAB4] gi|163860493|gb|ABY41552.1| ATP-dependent DNA helicase PcrA [Bacillus weihenstephanensis KBAB4] Length = 747 Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 3/82 (3%) Query: 8 QEHSETID-LISQTKSEQLLASDPTRSAWV-SANAGSGKTHILVQRVLRLLLANA-HPST 64 Q H T D L++ +Q A T A + A AGSGKT +L R+ LL P Sbjct: 2 QAHMSTTDKLLNGLNPQQQKAVQTTNGALLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEII 86 +L +T T AA EM R+ +++ Sbjct: 62 VLAITFTNKAAREMRERIDKLV 83 >gi|325203353|gb|ADY98806.1| DNA helicase II [Neisseria meningitidis M01-240355] Length = 735 Score = 40.8 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|313680112|ref|YP_004057851.1| ATP-dependent DNA helicase, rep family [Oceanithermus profundus DSM 14977] gi|313152827|gb|ADR36678.1| ATP-dependent DNA helicase, Rep family [Oceanithermus profundus DSM 14977] Length = 719 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 A V A AGSGKT +V RV LL +P+ +L +T T AA EM R+ ++ Sbjct: 25 ALVIAGAGSGKTRTVVHRVAYLLAEREVYPAEVLAVTFTNKAAGEMRERLSRMV 78 >gi|309808887|ref|ZP_07702768.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV 01V1-a] gi|308167885|gb|EFO70022.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV 01V1-a] Length = 742 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L +R+ L+ P +L +T T AA+EM RV +++ Sbjct: 27 VVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKAASEMRERVKQLLD------- 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 S A + ++ T HA C I++++ + Sbjct: 80 --------------------SDADSIWMS-----------TFHALCVRILRRYAEKIGYA 108 Query: 155 SHFAIADEEQSKKLIE 170 ++F+IAD + LI+ Sbjct: 109 NNFSIADTAEQLTLIK 124 >gi|292670877|ref|ZP_06604303.1| ATP-dependent DNA helicase PcrA [Selenomonas noxia ATCC 43541] gi|292647498|gb|EFF65470.1| ATP-dependent DNA helicase PcrA [Selenomonas noxia ATCC 43541] Length = 747 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ LL P +L +T T AA EM RV +I Sbjct: 24 IVAGAGSGKTRVLTFRIANLLEHAVPPYRILAITFTNKAAREMRDRVDTLI 74 >gi|86160294|ref|YP_467079.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776805|gb|ABC83642.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C] Length = 1111 Score = 40.8 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 25/148 (16%) Query: 38 ANAGSGKTHILVQRVL-RLLLANAHPSTLL----CLTHTKAAAAEMSHRVLEIITAWSHL 92 A AG+GKT +LV R++ R+ + P+ L +T T+ AA E+ R+ E L Sbjct: 28 AGAGTGKTTLLVARLVERVAPEDDGPALPLGRIAAVTFTRKAAGELRLRIREA------L 81 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + A++T+++ R L L V TIH+F + +++ P+EA Sbjct: 82 LRALARADLTELR------------RRRLADALSALDTAHVGTIHSFADRLLRLRPVEAR 129 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASI 180 ++ + I +++ L++EA + L ++ Sbjct: 130 LSPSYDIVEDDAP--LVDEAFAAFLHAV 155 >gi|33865451|ref|NP_897010.1| exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp. WH 8102] gi|33632620|emb|CAE07432.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp. WH 8102] Length = 1186 Score = 40.8 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 29/144 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV----------LE 84 + A+AG+GKT L LRL+ A P +LL +T T AAAAE+ R+ LE Sbjct: 17 LEASAGTGKTFALAHLTLRLISEAAMPLPSLLVVTFTDAAAAELRSRIGQRLQDALAGLE 76 Query: 85 IITAWSHL--SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE- 141 + L +D +L + + + +S+ ++ LE + TIH FC Sbjct: 77 AVARGDALPKADSVLQQWWQQAPQGQSRRDWISR----VLMALEQLDAADITTIHGFCSR 132 Query: 142 ----------AIMQQFPLEANITS 155 A MQQ LE + T+ Sbjct: 133 SLRRQAINSGAAMQQ-QLETDATA 155 >gi|254526415|ref|ZP_05138467.1| UvrD/REP helicase domain protein [Prochlorococcus marinus str. MIT 9202] gi|221537839|gb|EEE40292.1| UvrD/REP helicase domain protein [Prochlorococcus marinus str. MIT 9202] Length = 802 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 2/54 (3%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT L R+ L+ N+ P +L +T T AA EM R LE++ A Sbjct: 29 VVAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAKEMKAR-LEVLLA 81 >gi|242280176|ref|YP_002992305.1| exodeoxyribonuclease V [Desulfovibrio salexigens DSM 2638] gi|242123070|gb|ACS80766.1| Exodeoxyribonuclease V [Desulfovibrio salexigens DSM 2638] Length = 1059 Score = 40.8 bits (94), Expect = 0.14, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 28/147 (19%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC---------------LTHTKAAAAEMS 79 V A+AGSGKT+ L R L LL A S +C +T T AAAEM Sbjct: 5 VKASAGSGKTYELTGRFLSLLAGAQEEDSVPVCKSSQGKGYCWPEIMAVTFTNKAAAEMK 64 Query: 80 HRVLEIITAWS-HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV+ + + + + L A+ + KK LI IL+ L ++TI + Sbjct: 65 ERVIRSLKNRALDIEGDGLGADWKPLDAKKQ-----------LIPILQRYNRLNIRTIDS 113 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQS 165 +++ F LE ++ F + E Q+ Sbjct: 114 LLNLLVRIFALELGLSPEFELLFEPQA 140 >gi|16800937|ref|NP_471205.1| ATP-dependent DNA helicase [Listeria innocua Clip11262] gi|16414372|emb|CAC97101.1| ATP-dependent DNA helicase [Listeria innocua Clip11262] Length = 731 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +L+ EQ A + T + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 5 ELVDGLNPEQRKAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 64 Query: 73 AAAAEMSHRVLEIITA 88 AA EM R+ ++ Sbjct: 65 KAAREMKSRIGNLMGG 80 >gi|332034769|gb|EGI71309.1| hypothetical protein PH505_du00060 [Pseudoalteromonas haloplanktis ANT/505] Length = 650 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 S +S AGSGKT+ LV+ +L+ +L +++ C+T+T AA E+ RV Sbjct: 27 SFLLSGGAGSGKTYSLVE-ILKAVLVENPTTSIACITYTNAAVDEIEERV 75 >gi|255994849|ref|ZP_05427984.1| ATP-dependent DNA helicase PcrA [Eubacterium saphenum ATCC 49989] gi|255993562|gb|EEU03651.1| ATP-dependent DNA helicase PcrA [Eubacterium saphenum ATCC 49989] Length = 753 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHR 81 V A AGSGKT ++ R+ L+L N P +L +T T AA EM R Sbjct: 34 VLAGAGSGKTKMMTHRMAYLILEKNVDPQNILAVTFTNKAANEMKQR 80 >gi|227822621|ref|YP_002826593.1| DNA helicase II [Sinorhizobium fredii NGR234] gi|227341622|gb|ACP25840.1| DNA helicase II [Sinorhizobium fredii NGR234] Length = 871 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AG+GKT +L R+ +L A+PS +L +T T AA EM R+ Sbjct: 64 VLAGAGTGKTRVLTTRIAHILSTGRAYPSQILAVTFTNKAAREMKERI 111 >gi|167645425|ref|YP_001683088.1| UvrD/REP helicase [Caulobacter sp. K31] gi|167347855|gb|ABZ70590.1| UvrD/REP helicase [Caulobacter sp. K31] Length = 804 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Query: 23 EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 EQ A + T V A AG+GKT +L R+ +L A P LL +T T AA EM Sbjct: 50 EQRAAVEATEGPVLVLAGAGTGKTRVLTTRLAHILATGRARPWELLVVTFTNKAAREMRE 109 Query: 81 RVLEII 86 R+ II Sbjct: 110 RITHII 115 >gi|221231865|ref|YP_002511017.1| putative ATP-dependent exonuclease subunit A [Streptococcus pneumoniae ATCC 700669] gi|251764564|sp|B8ZQ32|ADDA_STRPJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|220674325|emb|CAR68871.1| putative ATP-dependent exonuclease subunit A [Streptococcus pneumoniae ATCC 700669] Length = 1216 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ +D+ Sbjct: 45 VSASAGSGKTFVMAERILNQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|148995044|ref|ZP_01823987.1| exonuclease RexA [Streptococcus pneumoniae SP9-BS68] gi|168488979|ref|ZP_02713178.1| recombination helicase AddA [Streptococcus pneumoniae SP195] gi|147926887|gb|EDK77936.1| exonuclease RexA [Streptococcus pneumoniae SP9-BS68] gi|183572407|gb|EDT92935.1| recombination helicase AddA [Streptococcus pneumoniae SP195] gi|332073494|gb|EGI83973.1| recombination helicase AddA [Streptococcus pneumoniae GA17570] Length = 1216 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 19/135 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKIS-------- 96 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 KIQ D+ +HL + + P + T+ +F + + + +I Sbjct: 97 ------KKIQ----ETDDVDLKQHLGCQLADLPNA-AIGTMDSFTQKFLGKHGYLLDIAP 145 Query: 156 HFAIADEEQSKKLIE 170 +F I + + L+E Sbjct: 146 NFRILQNQSEQLLLE 160 >gi|325690487|gb|EGD32490.1| exonuclease RexA [Streptococcus sanguinis SK115] Length = 1224 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 VSA+AGSGKT ++VQR++ +L L T T AA E+ R+ Sbjct: 45 VSASAGSGKTFVMVQRIIDQILRGVAVRQLFISTFTVKAAGELKERL 91 >gi|224418438|ref|ZP_03656444.1| ATP-dependent helicase [Helicobacter canadensis MIT 98-5491] gi|253827754|ref|ZP_04870639.1| putative helicase [Helicobacter canadensis MIT 98-5491] gi|313141969|ref|ZP_07804162.1| ATP-dependent helicase [Helicobacter canadensis MIT 98-5491] gi|253511160|gb|EES89819.1| putative helicase [Helicobacter canadensis MIT 98-5491] gi|313131000|gb|EFR48617.1| ATP-dependent helicase [Helicobacter canadensis MIT 98-5491] Length = 674 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 31/53 (58%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 P+ + A+AG+GKT +V R+ LL + P+ +L LT T AA EM R+ Sbjct: 17 PSGYNLIIASAGTGKTSTIVGRISYLLESGILPNEILLLTFTNKAAQEMLKRL 69 >gi|167947687|ref|ZP_02534761.1| DNA helicase II [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 127 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 3/77 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLT 69 S +D +++ + + + S P + + A AGSGKT +LV R+ L+ A P ++L +T Sbjct: 4 SPILDPLNEAQRDAV--SAPVGNLLILAGAGSGKTRVLVHRIAWLMAVEATSPWSILAVT 61 Query: 70 HTKAAAAEMSHRVLEII 86 T AA EM R+ E++ Sbjct: 62 FTNKAAKEMRGRIEELM 78 >gi|89896637|ref|YP_520124.1| hypothetical protein DSY3891 [Desulfitobacterium hafniense Y51] gi|89336085|dbj|BAE85680.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 760 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ P +L +T T AA EM RV ++ Sbjct: 29 ILAGAGSGKTRVLTYRIAHLIAQGVEPWHILAITFTNKAAQEMRDRVYSLV 79 >gi|30249444|ref|NP_841514.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718] gi|30138807|emb|CAD85384.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718] Length = 744 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L++ EQL A + +SA V A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LLTDLNPEQLEAVTWSHQSALVLAGAGSGKTRVLTTRIAYLLQSGRTRPQNILAVTFTNK 63 Query: 74 AAAEMSHRV 82 AA EM R+ Sbjct: 64 AAREMVARI 72 >gi|329928663|ref|ZP_08282517.1| UvrD/REP helicase [Paenibacillus sp. HGF5] gi|328937626|gb|EGG34041.1| UvrD/REP helicase [Paenibacillus sp. HGF5] Length = 822 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI 85 A AGSGKT +LV R L+ A + PS++L +T + AA EM R++ + Sbjct: 72 AGAGSGKTSVLVSRTGYLIAAKSVDPSSILLVTFSSKAATEMKERIMAL 120 >gi|325977976|ref|YP_004287692.1| ATP-dependent exonuclease subunit A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177904|emb|CBZ47948.1| ATP-dependent exonuclease subunit A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 1168 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 22/155 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT-AWSHLSD 94 VSA+AGSGKT ++V+R++ +L L T T AA E+ R+ + I+ A +D Sbjct: 2 VSASAGSGKTFVMVERIIDKILRGVTIDQLFISTFTVKAAGELKERIEKKISQALQETTD 61 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +D+ + + L+T + T+ AF + ++ Q+ I+ Sbjct: 62 -----------------NDLKNYLNEQLLGLQTA---DIGTMDAFTQKLVNQYGYTLGIS 101 Query: 155 SHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 F I D+ + L E + M N+ EL Sbjct: 102 PTFRIMTDKSEQDILKNEVFFDLFSDYMTGNDAEL 136 >gi|209542394|ref|YP_002274623.1| UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5] gi|209530071|gb|ACI50008.1| UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5] Length = 760 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 40/159 (25%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 D + + EQ A + T V A AG+GKT +L R +LL+ A P +L +T T Sbjct: 35 DYLQRLNPEQRAAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLSGRARPYQILAVTFTN 94 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ E GL Sbjct: 95 KAAREMRERIGALLG--------------------------------------EPVEGLW 116 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 + T HA C ++++ + S F I D + +L+++ Sbjct: 117 LGTFHALCARMLRRHAEYVGLGSGFTILDTDDQLRLLKQ 155 >gi|162147772|ref|YP_001602233.1| putative DNA helicase II [Gluconacetobacter diazotrophicus PAl 5] gi|161786349|emb|CAP55931.1| putative DNA helicase II [Gluconacetobacter diazotrophicus PAl 5] Length = 743 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 40/159 (25%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 D + + EQ A + T V A AG+GKT +L R +LL+ A P +L +T T Sbjct: 18 DYLQRLNPEQRAAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLSGRARPYQILAVTFTN 77 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ E GL Sbjct: 78 KAAREMRERIGALLG--------------------------------------EPVEGLW 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 + T HA C ++++ + S F I D + +L+++ Sbjct: 100 LGTFHALCARMLRRHAEYVGLGSGFTILDTDDQLRLLKQ 138 >gi|116074476|ref|ZP_01471738.1| UvrD/REP helicase [Synechococcus sp. RS9916] gi|116069781|gb|EAU75533.1| UvrD/REP helicase [Synechococcus sp. RS9916] Length = 795 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 20/145 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+ + A P+ +L +T T AA EM R LE++ L+ Sbjct: 24 VVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFTNKAAREMKER-LELL-----LAQ 77 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQQFPLEA-- 151 + S++ + P + R L I E L + T HA A M +F ++ Sbjct: 78 RLASSQFGQPWSTLP----AVEQRQLRSRIYREVTKELWIGTFHALF-ARMLRFDIDKFK 132 Query: 152 -----NITSHFAIADEEQSKKLIEE 171 T F+I DE ++ L++E Sbjct: 133 DAEGLTWTKQFSIYDEADAQSLVKE 157 >gi|325971006|ref|YP_004247197.1| UvrD/REP helicase [Spirochaeta sp. Buddy] gi|324026244|gb|ADY13003.1| UvrD/REP helicase [Spirochaeta sp. Buddy] Length = 672 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L R+ +L ++L LT T AA EM R+ Sbjct: 26 VIAGAGSGKTRMLTYRIANMLQNGIKEESILALTFTNKAAKEMGERI 72 >gi|260436511|ref|ZP_05790481.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus sp. WH 8109] gi|260414385|gb|EEX07681.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus sp. WH 8109] Length = 1206 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 17/127 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV----------LE 84 + A+AG+GKT L LRL+ A+ LL +T T AAA E+ R+ LE Sbjct: 19 LEASAGTGKTFALAHLCLRLITEADYALEALLVVTFTDAAAEELRSRIGQRLQQSLQGLE 78 Query: 85 IITAWSHLS--DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + S D +L+ ++ G +P ++ R LL+ LE + TIH FC Sbjct: 79 RLEQGMEASAPDTVLADWLS---GSEPGEARQRWIRRLLVA-LEQLDRADITTIHGFCRR 134 Query: 143 IMQQFPL 149 +++ L Sbjct: 135 SLRRLAL 141 >gi|170732538|ref|YP_001764485.1| exodeoxyribonuclease V subunit beta [Burkholderia cenocepacia MC0-3] gi|169815780|gb|ACA90363.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia MC0-3] Length = 1235 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 25 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRSRLAQLAHALD 84 Query: 95 ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + A + + D A + L + TIHAFC+ +Q+ Sbjct: 85 TGDDGGDPFIARLLETTLGDDGALDSETAAKRIRRALRAFDQAAIHTIHAFCQRALQE 142 >gi|92118249|ref|YP_577978.1| UvrD/REP helicase [Nitrobacter hamburgensis X14] gi|91801143|gb|ABE63518.1| ATP-dependent DNA helicase, Rep family [Nitrobacter hamburgensis X14] Length = 833 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A P +L +T T AA EM HR+ +++ Sbjct: 55 VLAGAGTGKTRVLTTRIAHILSQGRARPGEILSVTFTNKAAREMKHRLGQML 106 >gi|254245830|ref|ZP_04939151.1| ATP-dependent exoDNAse [Burkholderia cenocepacia PC184] gi|124870606|gb|EAY62322.1| ATP-dependent exoDNAse [Burkholderia cenocepacia PC184] Length = 1235 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 25 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRSRLAQLAHALD 84 Query: 95 ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + A + + D A + L + TIHAFC+ +Q+ Sbjct: 85 TGDDGGDPFIARLLETTLGDDGALDSETAAKRIRRALRAFDQAAIHTIHAFCQRALQE 142 >gi|107022291|ref|YP_620618.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia AU 1054] gi|105892480|gb|ABF75645.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia AU 1054] Length = 2007 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 25 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRSRLAQLAHALD 84 Query: 95 ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + A + + D A + L + TIHAFC+ +Q+ Sbjct: 85 TGDDGGDPFIARLLETTLGDDGALDSGTAAKRIRRALRAFDQAAIHTIHAFCQRALQE 142 >gi|229816023|ref|ZP_04446344.1| hypothetical protein COLINT_03076 [Collinsella intestinalis DSM 13280] gi|229808337|gb|EEP44118.1| hypothetical protein COLINT_03076 [Collinsella intestinalis DSM 13280] Length = 950 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 46/162 (28%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 ID ++ + E +L ++ V A AGSGKT +L R+ R++ P +L +T T Sbjct: 82 IDTLNPAQREAVLTTEG--PLLVLAGAGSGKTRVLTFRIARMIGDLGIRPWQILAITFTN 139 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R LSA + P+ GG++ Sbjct: 140 KAAAEMRER---------------LSAML-------PD------------------GGMR 159 Query: 133 ---VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 V T HA C ++++ T F I D++ S++++ E Sbjct: 160 GMWVCTFHAMCVRMLREDADLLGYTGQFTIYDDDDSRRMVRE 201 >gi|296169029|ref|ZP_06850691.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896288|gb|EFG75947.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 1135 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%) Query: 1 MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59 MI S E ++ + L T+ + + + P V A AG+GKT + RV+ L+AN Sbjct: 44 MIPRFSPAELADALGLFPPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLIANG 102 Query: 60 -AHPSTLLCLTHTKAAAAEMSHRV 82 A P +L LT T+ AA ++ RV Sbjct: 103 YAEPGQVLGLTFTRKAAGQLLRRV 126 >gi|255076889|ref|XP_002502109.1| ATP-dependent DNA helicase [Micromonas sp. RCC299] gi|226517374|gb|ACO63367.1| ATP-dependent DNA helicase [Micromonas sp. RCC299] Length = 907 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVL 83 P V A GSGKT +LV RV L+ PS +LC+T T AA EM R++ Sbjct: 70 PVAPMKVLAGPGSGKTRVLVGRVTHLINELGVPPSHILCITFTNKAAREMRERLV 124 >gi|167752257|ref|ZP_02424384.1| hypothetical protein ALIPUT_00500 [Alistipes putredinis DSM 17216] gi|167660498|gb|EDS04628.1| hypothetical protein ALIPUT_00500 [Alistipes putredinis DSM 17216] Length = 813 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 S+ + ++Q + + ++ D + + A AGSGKT +L R+ ++ P +L LT Sbjct: 3 SQILKGLNQAQRDAVVNYD--SPSLIIAGAGSGKTRVLTSRIAYMIEQGVAPYNILALTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSH 91 T AA +M R+ +++ H Sbjct: 61 TNKAAEQMRERIAQMLPDGRH 81 >gi|125622886|ref|YP_001031369.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp. cremoris MG1363] gi|251764529|sp|A2RH77|ADDA_LACLM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|124491694|emb|CAL96613.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp. cremoris MG1363] gi|300069624|gb|ADJ59024.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp. cremoris NZ9000] Length = 1203 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 28/187 (14%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 ++ VSA+AGSGKT ++ QR++ + L T TK AA+E+ R Sbjct: 19 KNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAASELRMR---------- 68 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 L ++ K + SD +A H L L+ + T+ +F + + + Sbjct: 69 -----LERDLKKA---RQESSDDEEA-HRLTLALQNLSNADIGTMDSFTQKLTKANFNRV 119 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 NI +F I ++ LI + L L +E L IS D+ E LI + Sbjct: 120 NIDPNFRILADQTESDLIRQEVFEQLVESYLSADESLN--------ISKDK-FEKLIKNF 170 Query: 212 ISNRTAL 218 +R L Sbjct: 171 SKDRNIL 177 >gi|161525258|ref|YP_001580270.1| exodeoxyribonuclease V subunit beta [Burkholderia multivorans ATCC 17616] gi|189350004|ref|YP_001945632.1| exodeoxyribonuclease V subunit beta [Burkholderia multivorans ATCC 17616] gi|160342687|gb|ABX15773.1| exodeoxyribonuclease V, beta subunit [Burkholderia multivorans ATCC 17616] gi|189334026|dbj|BAG43096.1| exodeoxyribonuclease V beta subunit [Burkholderia multivorans ATCC 17616] Length = 1236 Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 7/118 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 26 IEASAGTGKTWNICALYVRLLLEQDLGADQILVVTFTKAATAELHERIRGRLAQLAHALD 85 Query: 95 ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + A++ + D + A + L + TIHAFC+ +Q+ Sbjct: 86 TGDDGGDPFVAKLFETTLAAGGPLDAATAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143 >gi|20807099|ref|NP_622270.1| superfamily I DNA/RNA helicase [Thermoanaerobacter tengcongensis MB4] gi|20515591|gb|AAM23874.1| Superfamily I DNA and RNA helicases [Thermoanaerobacter tengcongensis MB4] Length = 713 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ L+ PS +L +T T AA EM RV Sbjct: 33 AGAGSGKTRVLTHRIAYLIKEKKVSPSNILAITFTNKAAEEMKTRV 78 >gi|56477159|ref|YP_158748.1| hypothetical protein ebA3053 [Aromatoleum aromaticum EbN1] gi|56313202|emb|CAI07847.1| similar to ATP-dependent DNA helicase,putative replication protein [Aromatoleum aromaticum EbN1] Length = 660 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 38/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ ++ L+ A +P + +T T AA EM RV ++ Sbjct: 22 VLAGAGSGKTRVITHKIAHLINACGLNPVNIAAITFTNKAAKEMQERVAGLMGG------ 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 PGGL V T HA I++Q + Sbjct: 76 -------------------------------RVPGGLTVCTFHALGVKIVRQEAKHCGLK 104 Query: 155 SHFAIADEEQSKKLI 169 F+I D + +++ Sbjct: 105 PQFSILDASDTVQIV 119 >gi|150017986|ref|YP_001310240.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052] gi|149904451|gb|ABR35284.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052] Length = 691 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 9/73 (12%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 D + + V+AN GSGKT +L+ +++ L A N ++ LT T AA E+ R++ Sbjct: 20 DESDACVVNANVGSGKTTVLISKIVYLHYAKNISYKDMIVLTFTNKAANEIKERLM---- 75 Query: 88 AWSHLSDEILSAE 100 +SDE + +E Sbjct: 76 ----VSDESIKSE 84 >gi|94984975|ref|YP_604339.1| UvrD/REP helicase [Deinococcus geothermalis DSM 11300] gi|94555256|gb|ABF45170.1| UvrD/REP helicase [Deinococcus geothermalis DSM 11300] Length = 741 Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 2/79 (2%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++Q Q A++ T A V A AGSGKT LV R+ L+ P +L +T T Sbjct: 9 LLAQLNPNQAQAANHYTGPALVIAGAGSGKTRTLVYRIAHLIGHYGVDPGEILAVTFTNK 68 Query: 74 AAAEMSHRVLEIITAWSHL 92 AAAEM R ++ L Sbjct: 69 AAAEMRERARHLVEGADRL 87 >gi|158426099|ref|YP_001527391.1| DNA helicase II [Azorhizobium caulinodans ORS 571] gi|158332988|dbj|BAF90473.1| DNA helicase II [Azorhizobium caulinodans ORS 571] Length = 835 Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A+PS +L +T T AA EM R+ ++ Sbjct: 89 VLAGAGTGKTRVLTTRIAHILSQGRAYPSQILAVTFTNKAAREMKERIHAMV 140 >gi|152981250|ref|YP_001352009.1| DNA helicase II / ATP-dependent DNA helicase [Janthinobacterium sp. Marseille] gi|151281327|gb|ABR89737.1| DNA helicase II / ATP-dependent DNA helicase [Janthinobacterium sp. Marseille] Length = 760 Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +L+ EQL A + P + A + A AGSGKT +L R+ L+ P+ +L +T T Sbjct: 3 NLLHNLNPEQLAAVTLPAQPALILAGAGSGKTRVLTTRIAWLIQTGQVSPAGILAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAKEMMTRL 72 >gi|172056503|ref|YP_001812963.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sibiricum 255-15] gi|171989024|gb|ACB59946.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sibiricum 255-15] Length = 741 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 L+S EQ A T + A AGSGKT +L RV L+ A P +L +T T Sbjct: 8 LVSGLNPEQAKAVKHTDGPLLIMAGAGSGKTRVLTHRVAYLMAAKQVAPWNILAITFTNK 67 Query: 74 AAAEMSHRVLEIITA 88 AA EM R+ ++ Sbjct: 68 AAREMRDRISRLVGG 82 >gi|301310450|ref|ZP_07216389.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 20_3] gi|300832024|gb|EFK62655.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 20_3] Length = 779 Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 E ++ +++++ E ++ ++ + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 5 EYLNQLNESQREAVVYNEG--PSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 62 Query: 72 KAAAAEMSHRVLEI 85 AA EM R+ I Sbjct: 63 NKAAREMKERIAAI 76 >gi|261409570|ref|YP_003245811.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. Y412MC10] gi|261286033|gb|ACX68004.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. Y412MC10] Length = 776 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D + + +Q A + T + A AGSGKT +L R+ L+ A P ++L +T T Sbjct: 8 DAVRRLNPQQRQAVEATDGPLLIMAGAGSGKTRVLTHRIAYLIATRKAAPWSILAITFTN 67 Query: 73 AAAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 68 KAAREMQERVSKLV 81 >gi|123966427|ref|YP_001011508.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9515] gi|123200793|gb|ABM72401.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9515] Length = 1212 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 12/124 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A+AG+GK+ L VLR +L P +L L+ TK +E+ ++L + ++ L Sbjct: 15 VEASAGTGKSFTLAHLVLRNVLEKKIKPEEILLLSFTKNTCSELKDKIL---SRFNKLKS 71 Query: 95 EILSAEITKIQG------KKPNKSDMSKARHL--LITILETPGGLKVQTIHAFCEAIMQQ 146 + + + T+I K +K + + + + LKV T HAFC I+++ Sbjct: 72 FLQNHDDTEIDDTLLEWYDKYHKEEKYPENIIFEIDNFVNAFYKLKVTTFHAFCNNILEE 131 Query: 147 FPLE 150 + ++ Sbjct: 132 YSID 135 >gi|118580565|ref|YP_901815.1| exodeoxyribonuclease V, beta subunit [Pelobacter propionicus DSM 2379] gi|118503275|gb|ABK99757.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pelobacter propionicus DSM 2379] Length = 1203 Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 10/123 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVL-EIITAWSHLS 93 + A+AG+GKT+ + LRL++ ++ P +L +T+T+AA E+ R+ I A S Sbjct: 17 IEASAGTGKTYAIACLYLRLVIESDLTPEQILVVTYTEAATEELRGRIRSRIRQALDTFS 76 Query: 94 -----DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 D L + K+ + P + AR+ L L++ + TIH FC +Q Sbjct: 77 GTVSKDPFLLGLVQKVNKEGPGE---DIARNRLDRALKSFDLASIFTIHGFCLRALQDNA 133 Query: 149 LEA 151 E+ Sbjct: 134 FES 136 >gi|116689237|ref|YP_834860.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia HI2424] gi|116647326|gb|ABK07967.1| exodeoxyribonuclease V, beta subunit [Burkholderia cenocepacia HI2424] Length = 1235 Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 25 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRSRLAQLAHALD 84 Query: 95 ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + A + + D A + L + TIHAFC+ +Q+ Sbjct: 85 TGDDGGDPFIARLLETTLGDDGALDSGTAAKRIRRALRAFDQAAIHTIHAFCQRALQE 142 >gi|306835613|ref|ZP_07468623.1| ATP-dependent DNA helicase PcrA [Corynebacterium accolens ATCC 49726] gi|304568504|gb|EFM44059.1| ATP-dependent DNA helicase PcrA [Corynebacterium accolens ATCC 49726] Length = 847 Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 11 SETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCL 68 +E+ L +QL A T R + A AGSGKT +L +R+ L+ +P +L + Sbjct: 44 AESDPLTQGLNPQQLEAVTHTGRPLLIVAGAGSGKTAVLTRRIAYLMRHRGVNPWEILAI 103 Query: 69 THTKAAAAEMSHRVLEII 86 T T AAAEM RV ++ Sbjct: 104 TFTNKAAAEMKERVGSLV 121 >gi|306831079|ref|ZP_07464240.1| ATP-dependent nuclease subunit A [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426645|gb|EFM29756.1| ATP-dependent nuclease subunit A [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 1210 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 22/155 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT-AWSHLSD 94 VSA+AGSGKT ++V+R++ +L L T T AA E+ R+ + I+ A +D Sbjct: 45 VSASAGSGKTFVMVERIIDKILRGVTIDQLFISTFTVKAAGELKERIEKKISQALQETTD 104 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +D+ + + L+T + T+ AF + ++ Q+ I+ Sbjct: 105 -----------------NDLKNYLNEQLLGLQTA---DIGTMDAFTQKLVNQYGYTLGIS 144 Query: 155 SHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 F I D+ + L E + M N+ EL Sbjct: 145 PTFRIMTDKSEQDILKNEVFFDLFSDYMTGNDAEL 179 >gi|229821382|ref|YP_002882908.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333] gi|229567295|gb|ACQ81146.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333] Length = 1136 Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 3/55 (5%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRV 82 P V A AGSGKT + RV L+AN+ PS +L LT T+ AA+E++ RV Sbjct: 39 PLEPMLVVAGAGSGKTATMTDRV-TYLVANSLVRPSEVLGLTFTRKAASELAERV 92 >gi|134093547|ref|YP_001098622.1| DNA helicase II [Herminiimonas arsenicoxydans] gi|133737450|emb|CAL60493.1| DNA helicase II [Herminiimonas arsenicoxydans] Length = 762 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +L+ EQL A + P + A + A AGSGKT +L R+ L+ P+ +L +T T Sbjct: 3 NLLHNLNPEQLAAVTLPAQPALILAGAGSGKTRVLTTRIAWLIQTGQVSPAGILAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAKEMMTRL 72 >gi|332174077|gb|AEE23331.1| UvrD/REP helicase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 947 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 8/115 (6%) Query: 2 IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NA 60 +Y N F + E+ L + + ++ D S + A AG+GKT ++V R LL + A Sbjct: 226 LYRNYF-DTVESNPLTEKQRRASVIDDD---SNLLLAGAGTGKTSVMVARAGYLLTSEQA 281 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT---KIQGKKPNKS 112 P +L L + K AA EM R+ + + S + S +T +++GK+P+ S Sbjct: 282 RPEEILLLAYGKKAATEMDERIKDKLGIDSIKTSTFHSLGLTIISQVEGKQPSLS 336 >gi|329955139|ref|ZP_08296096.1| ATP-dependent DNA helicase PcrA [Bacteroides clarus YIT 12056] gi|328526138|gb|EGF53157.1| ATP-dependent DNA helicase PcrA [Bacteroides clarus YIT 12056] Length = 785 Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 37/139 (26%), Positives = 49/139 (35%), Gaps = 37/139 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT +L ++ LL P +L LT T AA EM R+ Sbjct: 29 VIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAAREMKERI------------- 75 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + + +ARHL + T H+ I+ TS Sbjct: 76 -------------ARQVGIERARHLWMG-----------TFHSIFLRILHAEAARIGFTS 111 Query: 156 HFAIADEEQSKKLIEEAKK 174 F I D SK L+ K Sbjct: 112 KFTIYDTADSKSLLRSIIK 130 >gi|327314682|ref|YP_004330119.1| UvrD/REP helicase [Prevotella denticola F0289] gi|326944136|gb|AEA20021.1| UvrD/REP helicase [Prevotella denticola F0289] Length = 1094 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 8/127 (6%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH-LSD- 94 A+AGSGKT L + L++ N +L +T T A EM R+L + +H L D Sbjct: 10 ASAGSGKTFTLASEYITLVVKNPQDYKKILAVTFTNKATQEMKIRILSQLYGIAHHLPDS 69 Query: 95 EILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + ++ + G + + + ++A LL +VQTI AF +++++ E N Sbjct: 70 QAYFDQVVRKTGFQETVIRENAAEALSLLTHHYNE---FRVQTIDAFFQSVLRNLARELN 126 Query: 153 ITSHFAI 159 +T++ I Sbjct: 127 LTANLRI 133 >gi|255018267|ref|ZP_05290393.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL F2-515] Length = 241 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +L+ EQ A + T + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 7 ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 66 Query: 73 AAAAEMSHRVLEIITA 88 AA EM R+ ++ Sbjct: 67 KAAREMKSRIGNLMGG 82 >gi|322387878|ref|ZP_08061485.1| exonuclease RexA [Streptococcus infantis ATCC 700779] gi|321141151|gb|EFX36649.1| exonuclease RexA [Streptococcus infantis ATCC 700779] Length = 1216 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 19/134 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L L T T AA E+ R+ ++ Sbjct: 42 VSASAGSGKTFVMAERILDQLARGVEIRQLFISTFTVKAATELKERL-----------EK 90 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +S +I + Q DM +HL + + P + T+ +F + + + ++ Sbjct: 91 KISQQIQETQ-------DMELKKHLGRQLADLPNA-AIGTMDSFTQKFLAKHGYLIDLAP 142 Query: 156 HFAIADEEQSKKLI 169 +F I + E + L+ Sbjct: 143 NFRILENESEQLLL 156 >gi|288927546|ref|ZP_06421393.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 317 str. F0108] gi|288330380|gb|EFC68964.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 317 str. F0108] Length = 823 Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 39/157 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 +D +++++ E ++ +D + V A AGSGKT +L ++ LL P +L LT T Sbjct: 5 LDKLNESQREAVVYTDGPQ--LVIAGAGSGKTRVLTFKIAYLLQQGLKPWNILALTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ A+HL + Sbjct: 63 AANEMKARIGNLV--------------------------GHEGAKHLFMG---------- 86 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H+ I++ +S+F I DE S+ LI+ Sbjct: 87 -TFHSIFSRILRVEAPRIGFSSNFTIYDETDSRSLIK 122 >gi|256113967|ref|ZP_05454750.1| DNA helicase II [Brucella melitensis bv. 3 str. Ether] gi|265995308|ref|ZP_06107865.1| UvrD/REP helicase [Brucella melitensis bv. 3 str. Ether] gi|262766421|gb|EEZ12210.1| UvrD/REP helicase [Brucella melitensis bv. 3 str. Ether] Length = 858 Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A+PS +L +T T AA EM R+ ++ Sbjct: 65 VLAGAGTGKTRVLTTRIAHILSTGLAYPSQILAVTFTNKAAREMKERIGHLV 116 >gi|225852895|ref|YP_002733128.1| ATP-dependent DNA helicase PcrA [Brucella melitensis ATCC 23457] gi|256045044|ref|ZP_05447945.1| DNA helicase II [Brucella melitensis bv. 1 str. Rev.1] gi|256263623|ref|ZP_05466155.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9] gi|260565357|ref|ZP_05835841.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M] gi|265991470|ref|ZP_06104027.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. Rev.1] gi|225641260|gb|ACO01174.1| ATP-dependent DNA helicase pcrA [Brucella melitensis ATCC 23457] gi|260151425|gb|EEW86519.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M] gi|263002254|gb|EEZ14829.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. Rev.1] gi|263093675|gb|EEZ17680.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9] gi|326409437|gb|ADZ66502.1| ATP-dependent DNA helicase PcrA [Brucella melitensis M28] gi|326539143|gb|ADZ87358.1| ATP-dependent DNA helicase pcrA [Brucella melitensis M5-90] Length = 858 Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A+PS +L +T T AA EM R+ ++ Sbjct: 65 VLAGAGTGKTRVLTTRIAHILSTGLAYPSQILAVTFTNKAAREMKERIGHLV 116 >gi|170696477|ref|ZP_02887603.1| exodeoxyribonuclease V, beta subunit [Burkholderia graminis C4D1M] gi|170138630|gb|EDT06832.1| exodeoxyribonuclease V, beta subunit [Burkholderia graminis C4D1M] Length = 1233 Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 7/118 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSH 91 + A+AG+GKT + +RLLL N + +L +T TKAA AE+ R+ L + Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRGRLAELHRAIE 86 Query: 92 LSDEILSAEITKI--QGKKPNKS-DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 L D+ I ++ P + D A ++ L T + TIHAFC+ +Q+ Sbjct: 87 LDDDGGDPFIRRLFETTLAPERGIDRETALKVVRRALRTFDQAAIHTIHAFCQRALQE 144 >gi|298375530|ref|ZP_06985487.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_19] gi|298268030|gb|EFI09686.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_19] Length = 778 Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 E ++ +++++ E ++ ++ + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 3 EYLNQLNESQREAVVYNEG--PSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 60 Query: 72 KAAAAEMSHRVLEI 85 AA EM R+ I Sbjct: 61 NKAAREMKERIAAI 74 >gi|257092577|ref|YP_003166218.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045101|gb|ACV34289.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 724 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL++ QL A + P + A + A AGSGKT +L R+ L+ P +L +T T Sbjct: 3 DLLANLNPPQLAAVTLPAQHALILAGAGSGKTRVLTTRIAWLISTGQVGPQGILAVTFTN 62 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ ++ Sbjct: 63 KAAKEMQSRLAAML 76 >gi|255013887|ref|ZP_05286013.1| putative helicase [Bacteroides sp. 2_1_7] Length = 780 Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 E ++ +++++ E ++ ++ + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 5 EYLNQLNESQREAVVYNEG--PSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 62 Query: 72 KAAAAEMSHRVLEI 85 AA EM R+ I Sbjct: 63 NKAAREMKERIAAI 76 >gi|150007586|ref|YP_001302329.1| putative helicase [Parabacteroides distasonis ATCC 8503] gi|149936010|gb|ABR42707.1| putative helicase [Parabacteroides distasonis ATCC 8503] Length = 780 Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 E ++ +++++ E ++ ++ + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 5 EYLNQLNESQREAVVYNEG--PSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 62 Query: 72 KAAAAEMSHRVLEI 85 AA EM R+ I Sbjct: 63 NKAAREMKERIAAI 76 >gi|298244729|ref|ZP_06968535.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963] gi|297552210|gb|EFH86075.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963] Length = 959 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 13/94 (13%) Query: 2 IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-A 60 +YH E + I IS + L+ + P GSGKTH + + LLL+ A Sbjct: 9 LYHGRMNEEQQAI--ISHREGPLLVIAGP----------GSGKTHSITLLAMNLLLSGEA 56 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 PS L+ T+T+ AA EM R+ I A + +D Sbjct: 57 TPSQLILCTYTEKAALEMQDRLAGIAKAVDYRTD 90 >gi|159900168|ref|YP_001546415.1| UvrD/REP helicase [Herpetosiphon aurantiacus ATCC 23779] gi|159893207|gb|ABX06287.1| UvrD/REP helicase [Herpetosiphon aurantiacus ATCC 23779] Length = 641 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 40/139 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT +L R+ L+ A +++ +T T AA+E+ R+ +++ Sbjct: 22 VKAGAGSGKTRVLTYRIAYLIEQGASSDSIVSVTFTNKAASELRTRLRDLL--------- 72 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF--PLEANI 153 GK+ GL T HA C +++Q N Sbjct: 73 ----------GKRSR-------------------GLTAGTFHAICGKLLRQHINGRIRNY 103 Query: 154 TSHFAIADEEQSKKLIEEA 172 T++F I ++ +L+++A Sbjct: 104 TANFTIYAGDEQLQLVQQA 122 >gi|108757579|ref|YP_629768.1| ATP-dependent DNA helicase PcrA [Myxococcus xanthus DK 1622] gi|108461459|gb|ABF86644.1| ATP-dependent DNA helicase PcrA [Myxococcus xanthus DK 1622] Length = 783 Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V + AGSGKT ++ +RV L+ + N +P +L +T T AA EM R+++++ A Sbjct: 32 VLSGAGSGKTRVITRRVAYLVKVHNVYPWRILAVTFTNKAAREMRERLVQLLGA 85 >gi|271962781|ref|YP_003336977.1| ATP-dependent DNA helicase [Streptosporangium roseum DSM 43021] gi|270505956|gb|ACZ84234.1| ATP-dependent DNA helicase [Streptosporangium roseum DSM 43021] Length = 762 Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 51/135 (37%), Gaps = 39/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ LL A P +L +T T AA EM RV +I S Sbjct: 43 IVAGAGSGKTRVLTHRIAYLLGERGAQPQEILAITFTNKAAREMKDRVDNLIGPRS---- 98 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + V T H+ C I+++ Sbjct: 99 ----------------------------------AAMWVMTFHSACVRILRREAKRLGFP 124 Query: 155 SHFAIADEEQSKKLI 169 S F+I D+ S++L+ Sbjct: 125 SSFSIYDQADSQRLM 139 >gi|251772975|gb|EES53533.1| UvrD/REP helicase [Leptospirillum ferrodiazotrophum] Length = 1166 Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 10/118 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT-AWSHLSD 94 + A+AG+GKT L Q L +L+ +L +T T+AA E+ R+ +++ A SH Sbjct: 18 IEASAGTGKTFALTQLYLAAVLSGVPVEQILVVTFTEAATDELRGRLRTLLSHARSHALG 77 Query: 95 EILSAEITKIQG--KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 EI + + + + +S+A L P V TIH+FC +++++ E Sbjct: 78 VAPPPEILPLVADVRPEHLTLLSRA---LFDFDRAP----VATIHSFCRRVLREYAFE 128 >gi|240169399|ref|ZP_04748058.1| exonuclease V beta subunit recB [Mycobacterium kansasii ATCC 12478] Length = 1089 Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 29/153 (18%) Query: 25 LLASDPTRSAWV--SANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHR 81 LL P A + A+AG+GKT L V R L + +L +T +AA+ E+ R Sbjct: 6 LLGPLPAHGATIVLEASAGTGKTFALAGLVTRYLAETDVTLDEMLLITFNRAASRELRER 65 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL---------- 131 V D+I++A + + G+ P +D+ RHLL + E L Sbjct: 66 V----------RDQIVAA-VAALDGRMPTDTDL--VRHLLGSEAERAVRLARLRDALANF 112 Query: 132 ---KVQTIHAFCEAIMQQFPLEANITSHFAIAD 161 + T H FC ++++ + + S F + + Sbjct: 113 DAATIATTHEFCGSVLRSLGVAGDSDSGFTLRE 145 >gi|154483242|ref|ZP_02025690.1| hypothetical protein EUBVEN_00943 [Eubacterium ventriosum ATCC 27560] gi|149736050|gb|EDM51936.1| hypothetical protein EUBVEN_00943 [Eubacterium ventriosum ATCC 27560] Length = 780 Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 39/141 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ L+ + P ++ +T T AA EM RV +I+ Sbjct: 28 ILAGAGSGKTRVLTHRIAYLIEEKHVQPYNIMAITFTNKAAGEMRERVNKIVG------- 80 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 AE + V T H+ C I++++ + Sbjct: 81 --FGAE-----------------------------QVWVSTFHSACVRILRRYIDRIGYS 109 Query: 155 SHFAIADEEQSKKLIEEAKKS 175 + F I D E KKL+++ K+ Sbjct: 110 NDFTIYDTEDQKKLLKDVIKN 130 >gi|88860009|ref|ZP_01134648.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Pseudoalteromonas tunicata D2] gi|88818003|gb|EAR27819.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Pseudoalteromonas tunicata D2] Length = 1183 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 16/130 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLA------NAHPST---LLCLTHTKAAAAEMSHRVLE-I 85 + A+AG+GKT+ + LR LL P T +L +T T+AA AE+ RV + I Sbjct: 17 IEASAGTGKTYTITALYLRHLLGLQVAGQTGVPLTVEQILVVTFTEAATAEIKDRVRKRI 76 Query: 86 ITAWSHLSDEILSAEITK--IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 I A D ++ + +Q S+ A LL ++ + TIH FC+ + Sbjct: 77 ILA----RDALMGGDCDDAVVQAILSEVSETKMAFALLDAAAKSMDDAAIFTIHGFCQRM 132 Query: 144 MQQFPLEANI 153 ++Q E+ + Sbjct: 133 LKQHAFESGV 142 >gi|256839771|ref|ZP_05545280.1| ATP-dependent DNA helicase PcrA [Parabacteroides sp. D13] gi|256738701|gb|EEU52026.1| ATP-dependent DNA helicase PcrA [Parabacteroides sp. D13] Length = 778 Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 E ++ +++++ E ++ ++ + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 3 EYLNQLNESQREAVVYNEG--PSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 60 Query: 72 KAAAAEMSHRVLEI 85 AA EM R+ I Sbjct: 61 NKAAREMKERIAAI 74 >gi|253575957|ref|ZP_04853291.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. oral taxon 786 str. D14] gi|251844751|gb|EES72765.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. oral taxon 786 str. D14] Length = 661 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 +S+ +Q A + T + A AGSGKT +L R+ L+ A P +L +T T A Sbjct: 16 VSRLNPQQRQAVEATEGPLLIMAGAGSGKTRVLTHRIAYLIATRKAPPWAILAITFTNKA 75 Query: 75 AAEMSHRVLEIITA 88 A EM RV ++ Sbjct: 76 AREMQDRVSRLVGG 89 >gi|238924183|ref|YP_002937699.1| ATP-dependent DNA helicase [Eubacterium rectale ATCC 33656] gi|238875858|gb|ACR75565.1| ATP-dependent DNA helicase [Eubacterium rectale ATCC 33656] Length = 617 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 V A GSGKT ++ R +L+ + PS +L +T TKAAA EM R Sbjct: 20 VLAGPGSGKTAVITHRTKKLITKHHVKPSEILVITFTKAAANEMKER 66 >gi|152964961|ref|YP_001360745.1| exodeoxyribonuclease V, beta subunit [Kineococcus radiotolerans SRS30216] gi|151359478|gb|ABS02481.1| exodeoxyribonuclease V, beta subunit [Kineococcus radiotolerans SRS30216] Length = 1125 Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 63/146 (43%), Gaps = 13/146 (8%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + + A+AG+GKT+ + V R + A LL +T +AA AE+ RV E + A Sbjct: 18 PVATTVLEASAGTGKTYTIAGLVTRYVAEGVATVDQLLVVTFGRAATAELRDRVRERLVA 77 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL---KVQTIHAFCEAIMQ 145 + SA ++ +D ++A + E G V TIH FC ++ Sbjct: 78 TRDALADPASARRSRDAVLAHLAADDARAAEHRARLSEALAGFDTATVATIHEFCRQVL- 136 Query: 146 QFPLEANITSHFAIADEEQSKKLIEE 171 TS AD + S L+E+ Sbjct: 137 --------TSLGTAADVDPSATLVED 154 >gi|326387191|ref|ZP_08208801.1| ATP-dependent DNA helicase Rep [Novosphingobium nitrogenifigens DSM 19370] gi|326208372|gb|EGD59179.1| ATP-dependent DNA helicase Rep [Novosphingobium nitrogenifigens DSM 19370] Length = 764 Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70 E + +++ + E +L++D + A AG+GKT L R+ LL A PS +LC+T Sbjct: 14 EWLSRLNEPQREAVLSTDG--PVLMLAGAGTGKTAALTARLAWLLRQRLAWPSEILCVTF 71 Query: 71 TKAAAAEMSHRVLEII 86 T AA EM RV +I Sbjct: 72 TNKAAREMRERVGHLI 87 >gi|298293080|ref|YP_003695019.1| UvrD/REP helicase [Starkeya novella DSM 506] gi|296929591|gb|ADH90400.1| UvrD/REP helicase [Starkeya novella DSM 506] Length = 833 Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 3/74 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D ++ + E + A+D V A AG+GKT +L R+ +L L A PS +L +T T Sbjct: 68 LDGLNPEQREAVEATDG--PVLVLAGAGTGKTRVLTTRIAHILSLGLAWPSQILAVTFTN 125 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ ++ Sbjct: 126 KAAREMKERIHAMV 139 >gi|326791279|ref|YP_004309100.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427] gi|326542043|gb|ADZ83902.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427] Length = 681 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78 KS++ + + V A GSGKTH+++ RV ++ N P +L +T +K AA EM Sbjct: 4 NKSQKQAVTCLLKPTLVIAGPGSGKTHVIINRVHYMIEQLNCAPQHILVVTFSKLAAEEM 63 Query: 79 SHRVLEI 85 R +I Sbjct: 64 KQRYEKI 70 >gi|256374998|ref|YP_003098658.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827] gi|255919301|gb|ACU34812.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827] Length = 1349 Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Query: 4 HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--H 61 H S + ++ + L T + + + P A V A AG+GKT + RV+ L+AN Sbjct: 18 HASPADIADALGLHPPTPEQAAVIASPAAPALVVAGAGAGKTETMAARVV-YLVANGVVT 76 Query: 62 PSTLLCLTHTKAAAAEMSHRV 82 P +L LT T+ AA ++ RV Sbjct: 77 PDRVLGLTFTRKAARQLGERV 97 >gi|317153478|ref|YP_004121526.1| UvrD/REP helicase [Desulfovibrio aespoeensis Aspo-2] gi|316943729|gb|ADU62780.1| UvrD/REP helicase [Desulfovibrio aespoeensis Aspo-2] Length = 715 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 29/51 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +V R+ L+ P+ +L LT T+ AA EM R I+ Sbjct: 24 VIAGAGSGKTRTIVYRLAHLVRQGVDPAQILLLTFTRKAAQEMLARAGAIL 74 >gi|271501509|ref|YP_003334535.1| UvrD/REP helicase [Dickeya dadantii Ech586] gi|270345064|gb|ACZ77829.1| UvrD/REP helicase [Dickeya dadantii Ech586] Length = 685 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM+ R+LE Sbjct: 214 VLAGAGSGKTSVLVARAAWLLHRGEASPQQILLLAFGRQAAEEMNSRILE 263 >gi|261365712|ref|ZP_05978595.1| DNA helicase II [Neisseria mucosa ATCC 25996] gi|288565733|gb|EFC87293.1| DNA helicase II [Neisseria mucosa ATCC 25996] Length = 735 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNLEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|217968706|ref|YP_002353940.1| UvrD/REP helicase [Thauera sp. MZ1T] gi|217506033|gb|ACK53044.1| UvrD/REP helicase [Thauera sp. MZ1T] Length = 663 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 38/137 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ ++ L+ P+ + +T T AA EM RV I+ Sbjct: 22 VLAGAGSGKTRVITHKIAHLINECGISPNNIAAITFTNKAAKEMQERVAHIMGG------ 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 PGGL V T HA I++Q + Sbjct: 76 -------------------------------RVPGGLTVCTFHALGVRIVRQEAKHCGLK 104 Query: 155 SHFAIADEEQSKKLIEE 171 F+I D + +++ + Sbjct: 105 PQFSILDASDTVQIVSD 121 >gi|110680547|ref|YP_683554.1| DNA helicase II, putative [Roseobacter denitrificans OCh 114] gi|109456663|gb|ABG32868.1| DNA helicase II, putative [Roseobacter denitrificans OCh 114] Length = 810 Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AG+GKT L R++ LL A P+ +L +T T AA EM +RV E++ Sbjct: 50 AGAGTGKTRALTARIVHLLNTGRARPNEVLAVTFTNKAAREMKNRVGEML 99 >gi|329767683|ref|ZP_08259202.1| hypothetical protein HMPREF0428_00899 [Gemella haemolysans M341] gi|328839033|gb|EGF88621.1| hypothetical protein HMPREF0428_00899 [Gemella haemolysans M341] Length = 1212 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 31/130 (23%) Query: 30 PTRSAW-----------VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAE 77 PT W V+A AGSGKT +L +R+ R + LL LT T AAA Sbjct: 18 PTPPQWQAIAITGADVLVAAAAGSGKTEVLSERIARKVATKRWDIDRLLVLTFTTAAAKN 77 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M I+ +S+ +LS K+ + + K R L+ V TI Sbjct: 78 M------IVRIEDKISERLLST------NKEEDLLFLRKQRMLM-------NDAYVSTID 118 Query: 138 AFCEAIMQQF 147 +FC ++++F Sbjct: 119 SFCLNVLKKF 128 >gi|315655698|ref|ZP_07908596.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 51333] gi|315489762|gb|EFU79389.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 51333] Length = 1191 Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 89/197 (45%), Gaps = 15/197 (7%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78 T+ + + + P V A AGSGKT + R++ ++ A P +L LT T+ AAAEM Sbjct: 26 TQEQSAVITAPRGQLLVVAGAGSGKTETIANRLVYWVVNAGIVPEAILGLTFTRKAAAEM 85 Query: 79 SHRVLEIITAWSHLSDEI----LSAEITKIQGKKPNKSDMSKARHLLITILE---TPGGL 131 + R + ++ L + + +AE+T + K D+++ R T+++ TP L Sbjct: 86 AARFSLRLDRFASLLESVQERRQTAEVTAVL--KAADFDLNQLRQRFDTLVQRGMTPEML 143 Query: 132 K----VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + V T ++ ++ +F S F + +++ + +S ++ E Sbjct: 144 RHPVSVSTYDSYAGTLLTEFGTLVGRESGFTTITDAARYQIMTDVVQSWTGALGTKREGE 203 Query: 188 LKKAFYEI-LEISNDED 203 + I L ++ND + Sbjct: 204 NAENLVNILLSLANDTN 220 >gi|312114573|ref|YP_004012169.1| UvrD/REP helicase [Rhodomicrobium vannielii ATCC 17100] gi|311219702|gb|ADP71070.1| UvrD/REP helicase [Rhodomicrobium vannielii ATCC 17100] Length = 793 Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ LL + A P+ +L +T T AA EM RV +++ Sbjct: 54 VLAGAGTGKTRVLTTRMAHLLWTHRARPNEILAVTFTNKAAREMKERVGKLV 105 >gi|323525707|ref|YP_004227860.1| exodeoxyribonuclease V subunit beta [Burkholderia sp. CCGE1001] gi|323382709|gb|ADX54800.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. CCGE1001] Length = 1235 Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 7/118 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSH 91 + A+AG+GKT + +RLLL N + +L +T TKAA AE+ R+ L + Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRGRLAELHRAIE 86 Query: 92 LSDEILSAEITKI--QGKKPNKS-DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 L D+ I ++ P + D A ++ L T + TIHAFC+ +Q+ Sbjct: 87 LDDDGGDPFIRRLFETTLAPERGIDREAALKVVRRALRTFDQAAIHTIHAFCQRALQE 144 >gi|262381917|ref|ZP_06075055.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262297094|gb|EEY85024.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 780 Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 E ++ +++++ E ++ ++ + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 5 EYLNQLNESQREAVVYNEG--PSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 62 Query: 72 KAAAAEMSHRVLEI 85 AA EM R+ I Sbjct: 63 NKAAREMKERIAAI 76 >gi|322417761|ref|YP_004196984.1| UvrD/REP helicase [Geobacter sp. M18] gi|320124148|gb|ADW11708.1| UvrD/REP helicase [Geobacter sp. M18] Length = 730 Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 56/137 (40%), Gaps = 40/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++V R+ L+ P +L +T T AA EM RV Sbjct: 24 VLAGAGSGKTRVIVHRIAYLIHELGVPPWQILAVTFTNKAAGEMRERV------------ 71 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 RH+L ETP + T H+ C I++ Sbjct: 72 -----------------------RHMLGE-GETP---LISTFHSTCARILRSDIKSLGYD 104 Query: 155 SHFAIADEEQSKKLIEE 171 S+FAI D++ ++L++E Sbjct: 105 SNFAIYDDKDCERLLKE 121 >gi|172038900|ref|YP_001805401.1| ATP-dependent DNA helicase [Cyanothece sp. ATCC 51142] gi|171700354|gb|ACB53335.1| ATP-dependent DNA helicase [Cyanothece sp. ATCC 51142] Length = 772 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 24/182 (13%) Query: 13 TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70 +++ +SQ Q +A + V A AGSGKT L R+ L+ P ++L +T Sbjct: 4 SVNFLSQLNPSQRIAVEHFCGPLLVVAGAGSGKTRALTYRIAHLITHYQVDPESILAVTF 63 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEIT-KIQGKKPNK-SDMSKARHLLITILETP 128 T AA EM R+ + + + E+ K G+ N S+ + R L +T Sbjct: 64 TNKAAREMKDRL-----------ERLFAQEMALKHHGQPFNSLSEYDQKRLLSQVYKKTT 112 Query: 129 GGLKVQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAKKSTLASIML 182 L + T H+ C I++ ++ E T +F+I DE + L+ K L L Sbjct: 113 KKLWIGTFHSLCARILRYDINKYQDERKRTWERNFSIFDESDVQSLV---KNIVLKQFNL 169 Query: 183 DN 184 D+ Sbjct: 170 DD 171 >gi|165975830|ref|YP_001651423.1| exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875931|gb|ABY68979.1| exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 1202 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 8/129 (6%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEMSHRVLEIITA 88 +A + A+AG+GKT + LRLLL S +L +T TKAA E+ R+ I A Sbjct: 14 TALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNIKA 73 Query: 89 WSHLSDEILSAEITKIQG---KKPNKSDMSKARHLLITILETPGGL-KVQTIHAFCEAIM 144 E + + I + + + + L + I E L + TIH+FC+ ++ Sbjct: 74 CRRFLQEYDAEKTYDINDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIHSFCQKML 133 Query: 145 QQFPLEANI 153 QF ++ + Sbjct: 134 FQFAFDSGM 142 >gi|148262658|ref|YP_001229364.1| exodeoxyribonuclease V, beta subunit [Geobacter uraniireducens Rf4] gi|146396158|gb|ABQ24791.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Geobacter uraniireducens Rf4] Length = 1085 Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 14/123 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIIT------A 88 + A+AG+GKT + LRL+L +L +T T+AA E+ R+ E + A Sbjct: 17 IEASAGTGKTFTIAGIYLRLVLERQLAVGDILVVTFTEAATKELRERIRERLREAENAFA 76 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 SD +L+ G + D + AR LL T L + + TIH FC+ ++Q+ P Sbjct: 77 IGTSSDRLLA-------GLLESAIDRAAARRLLTTALRSFDEASIFTIHGFCQRMLQENP 129 Query: 149 LEA 151 E+ Sbjct: 130 FES 132 >gi|148266336|ref|YP_001233042.1| UvrD/REP helicase [Geobacter uraniireducens Rf4] gi|146399836|gb|ABQ28469.1| ATP-dependent DNA helicase PcrA [Geobacter uraniireducens Rf4] Length = 744 Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 44/158 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT ++V R+ L+ + P +L +T T AA EM RV +++ Sbjct: 24 ILAGAGSGKTRVIVHRIAYLIKERSVPPWQILAVTFTNKAAGEMRERVEKLLGG------ 77 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G+ P + T H+ C I+++ Sbjct: 78 -----------GELP----------------------LISTFHSACARILRREIHHLGYD 104 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 ++FAI D++ ++KL++E +A + LD K+F Sbjct: 105 ANFAIYDDKDAEKLLKE----IVAELNLDEKRYPVKSF 138 >gi|15615542|ref|NP_243846.1| ATP-dependent nuclease subunit A [Bacillus halodurans C-125] gi|10175602|dbj|BAB06699.1| ATP-dependent nuclease subunit A [Bacillus halodurans C-125] Length = 1129 Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 79/188 (42%), Gaps = 43/188 (22%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-------------AHPSTLLCLTHTKAAAAEMSHRV 82 +SA AGSGKT +L +R + + A L+ +T T+ AA EM R+ Sbjct: 22 LSAGAGSGKTRVLTERFVHICEQKWQETQNDLEASFGAEVDELVAITFTEKAAREMKERI 81 Query: 83 LEIITAWSHLSDEILSAEITKIQGK----KPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + L +++ A+ G+ + K + +AR + T H+ Sbjct: 82 RQ------RLLEKVEEAKAHGDAGQMIFWQKQKEGLERAR--------------ISTFHS 121 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC+ ++ ++ EA I F + DE ++ + K+ L + D L+ F ++LE Sbjct: 122 FCQRLLLEYAQEAGIPPTFIVLDEVEAAIM----KREILDDLFQD--ALLRPLFAKLLEC 175 Query: 199 SNDEDIET 206 +E+ Sbjct: 176 YTKRSLES 183 >gi|16330097|ref|NP_440825.1| DNA helicase II [Synechocystis sp. PCC 6803] gi|1652584|dbj|BAA17505.1| DNA helicase II [Synechocystis sp. PCC 6803] Length = 793 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 18/143 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIIT-AWSHLS 93 V A AGSGKT L R+ L+ + +P +L +T T AA EM R+ +I AW+ Sbjct: 30 VVAGAGSGKTRALTYRIAHLIRQHRINPENILAVTFTNKAAKEMKERLEKIFAQAWAQQE 89 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ------QF 147 ++ ++ GK K +S+ + + P L + T H+ C I++ Q Sbjct: 90 ----FSQRWELLGKYEQKQLLSR----VYKTVTKP--LWIGTFHSLCSRILRYDIDKYQD 139 Query: 148 PLEANITSHFAIADEEQSKKLIE 170 T F+I DE + L + Sbjct: 140 SSGRRWTKQFSIFDESDVQSLFK 162 >gi|323342977|ref|ZP_08083208.1| ATP-dependent DNA helicase PcrA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463041|gb|EFY08236.1| ATP-dependent DNA helicase PcrA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 715 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 44/142 (30%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R++ L+ +PS + +T T AA EM R+ ++ Sbjct: 24 VIAGAGSGKTRVLTTRIVHLIADLGYYPSKICAITFTNKAANEMKERMEAML-------- 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ--TIHAFCEAIMQQFPLEAN 152 P ++V TIH+ C I+++ N Sbjct: 76 ---------------------------------PDAIRVHTSTIHSLCVRIIREEYEALN 102 Query: 153 ITSHFAIADEEQSKKLIEEAKK 174 + +F I D + ++ EA K Sbjct: 103 LVRNFTILDTSDQQAVMREAYK 124 >gi|227875827|ref|ZP_03993953.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35243] gi|227843575|gb|EEJ53758.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35243] Length = 900 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 81/226 (35%), Gaps = 62/226 (27%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + P + V A AGSGKT +L +R+ LL P +L +T T AA EM RV Sbjct: 67 THPGGALLVMAGAGSGKTRVLTRRIAWLLATGRVRPWEILAITFTNKAAGEMRERV---- 122 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 E L K + V T H+ C I++ Sbjct: 123 --------ETLVGNAAKY--------------------------MWVSTFHSSCVRILRA 148 Query: 147 FPLEANITSHFAIADEEQSKKLIEE------------AKKSTLASIMLDNNEELKKAFYE 194 IT F+I D +K L+ KS A I NE ++ A + Sbjct: 149 EAETLGITRSFSIYDTADTKALLTRIIKGRGLDPKRFTPKSFAARISNAKNELVEPATFA 208 Query: 195 ILEISNDEDIETLISDIISNRTAL--KLIFFFFS-------YLWRR 231 E++ + I L ++I + L + F F YLWRR Sbjct: 209 --EMAAPDKISQLTAEIYAEYQQLLRRANAFDFDDLIAEVVYLWRR 252 >gi|149921690|ref|ZP_01910138.1| ATP-dependent DNA helicase PcrA [Plesiocystis pacifica SIR-1] gi|149817428|gb|EDM76900.1| ATP-dependent DNA helicase PcrA [Plesiocystis pacifica SIR-1] Length = 845 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 33/137 (24%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A AG+GKT ++ QRV L+ +L +T T AA EM R+ +L Sbjct: 26 AGAGTGKTRVITQRVAALIDEGVPAWRILAVTFTNKAAGEMRERIA-----------GLL 74 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157 E+ +++ P + T H+ C I+++ +T +F Sbjct: 75 EMELDELRRDGP----------------------WIGTFHSICARILRRHGQGVGLTRNF 112 Query: 158 AIADEEQSKKLIEEAKK 174 +I D + K L+ K Sbjct: 113 SIYDADDQKTLMRRVLK 129 >gi|307700275|ref|ZP_07637315.1| putative ATP-dependent DNA helicase PcrA [Mobiluncus mulieris FB024-16] gi|307614486|gb|EFN93715.1| putative ATP-dependent DNA helicase PcrA [Mobiluncus mulieris FB024-16] Length = 900 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 81/226 (35%), Gaps = 62/226 (27%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + P + V A AGSGKT +L +R+ LL P +L +T T AA EM RV Sbjct: 67 THPGGALLVMAGAGSGKTRVLTRRIAWLLATGRVRPWEILAITFTNKAAGEMRERV---- 122 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 E L K + V T H+ C I++ Sbjct: 123 --------ETLVGNAAKY--------------------------MWVSTFHSSCVRILRA 148 Query: 147 FPLEANITSHFAIADEEQSKKLIEE------------AKKSTLASIMLDNNEELKKAFYE 194 IT F+I D +K L+ KS A I NE ++ A + Sbjct: 149 EAETLGITRSFSIYDTADTKALLTRIIKGRGLDPKRFTPKSFAARISNAKNELVEPATFA 208 Query: 195 ILEISNDEDIETLISDIISNRTAL--KLIFFFFS-------YLWRR 231 E++ + I L ++I + L + F F YLWRR Sbjct: 209 --EMAAPDKISQLTAEIYAEYQQLLRRANAFDFDDLIAEVVYLWRR 252 >gi|229818113|ref|ZP_04448395.1| hypothetical protein BIFANG_03405 [Bifidobacterium angulatum DSM 20098] gi|229784717|gb|EEP20831.1| hypothetical protein BIFANG_03405 [Bifidobacterium angulatum DSM 20098] Length = 1288 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 31/53 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT+ + +R++ L+ P +L LT T+ AA E+ RV + A Sbjct: 24 VVAGAGSGKTYTMTRRIVSLIEHGVAPERILGLTFTRKAAGELLSRVSAAVLA 76 >gi|298345279|ref|YP_003717966.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063] gi|298235340|gb|ADI66472.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063] Length = 1191 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 89/197 (45%), Gaps = 15/197 (7%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78 T+ + + + P V A AGSGKT + R++ ++ A P +L LT T+ AAAEM Sbjct: 26 TQEQSAVITAPRGQLLVVAGAGSGKTETIANRLVYWVVNAGIVPEAILGLTFTRKAAAEM 85 Query: 79 SHRVLEIITAWSHLSDEI----LSAEITKIQGKKPNKSDMSKARHLLITILE---TPGGL 131 + R + ++ L + + +AE+T + K D+++ R T+++ TP L Sbjct: 86 AARFSLRLDRFASLLESVQERRQTAEVTAVL--KAADFDLNQLRQRFDTLVQRGMTPEML 143 Query: 132 K----VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + V T ++ ++ +F S F + +++ + +S ++ E Sbjct: 144 RHPVSVSTYDSYAGTLLTEFGTLVGRESGFTTITDAARYQIMTDVVQSWTGALGTKREGE 203 Query: 188 LKKAFYEI-LEISNDED 203 + I L ++ND + Sbjct: 204 NAENLVNILLSLANDTN 220 >gi|148259238|ref|YP_001233365.1| UvrD/REP helicase [Acidiphilium cryptum JF-5] gi|326402391|ref|YP_004282472.1| DNA helicase II [Acidiphilium multivorum AIU301] gi|146400919|gb|ABQ29446.1| ATP-dependent DNA helicase, Rep family [Acidiphilium cryptum JF-5] gi|325049252|dbj|BAJ79590.1| DNA helicase II [Acidiphilium multivorum AIU301] Length = 728 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 S+ +D ++ + E + A D V A AG+GKT +L R +LL A P+ +L +T Sbjct: 2 SDYLDRLNPAQREAVEAVDG--PVLVLAGAGTGKTRVLTTRFAHILLTRRAFPNQVLAVT 59 Query: 70 HTKAAAAEMSHRV 82 T AA EM RV Sbjct: 60 FTNKAAREMRERV 72 >gi|307700038|ref|ZP_07637087.1| UvrD/REP helicase [Mobiluncus mulieris FB024-16] gi|307614799|gb|EFN94019.1| UvrD/REP helicase [Mobiluncus mulieris FB024-16] Length = 1213 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78 T+ ++ + P V A AGSGKT + R++ ++ A P ++L LT TK A AEM Sbjct: 24 TEEQEQVIKAPLEPLLVVAGAGSGKTETIANRLVYWVVNGAISPQSVLGLTFTKKATAEM 83 Query: 79 SHR 81 R Sbjct: 84 GQR 86 >gi|303260559|ref|ZP_07346525.1| exonuclease RexA [Streptococcus pneumoniae SP-BS293] gi|303262692|ref|ZP_07348631.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS292] gi|303265228|ref|ZP_07351139.1| exonuclease RexA [Streptococcus pneumoniae BS397] gi|303266991|ref|ZP_07352865.1| exonuclease RexA [Streptococcus pneumoniae BS457] gi|303269649|ref|ZP_07355407.1| exonuclease RexA [Streptococcus pneumoniae BS458] gi|302636124|gb|EFL66620.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS292] gi|302638272|gb|EFL68741.1| exonuclease RexA [Streptococcus pneumoniae SP-BS293] gi|302640820|gb|EFL71209.1| exonuclease RexA [Streptococcus pneumoniae BS458] gi|302643471|gb|EFL73744.1| exonuclease RexA [Streptococcus pneumoniae BS457] gi|302645199|gb|EFL75435.1| exonuclease RexA [Streptococcus pneumoniae BS397] Length = 1216 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ +D+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|304317509|ref|YP_003852654.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779011|gb|ADL69570.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 716 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ L+ P+ +L +T T AA EM RV Sbjct: 26 AGAGSGKTRVLTHRIAYLIKEKRVSPANILAITFTNKAAQEMKDRV 71 >gi|227509969|ref|ZP_03940018.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190575|gb|EEI70642.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 743 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 56/196 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ ++ N P +L +T T AA EM RV +++ Sbjct: 27 IMAGAGSGKTRVLTHRIAYIIEHNHVMPWNILAITFTNKAAREMRERVSKLLD------- 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E+ + V T HA C I+++ + Sbjct: 80 -------------------------------ESGDDVWVSTFHALCVRILRRNIDQLGFN 108 Query: 155 SHFAIADEEQSKKLIEEA------------KKSTLASIMLDNNEEL-KKAFYEILEISND 201 F IAD + + L++ ++ L+SI N+ L KAF + D Sbjct: 109 RAFTIADTSEQRTLVKRVLRELNIDPKKFDPRAVLSSISNAKNDLLTPKAF----KAQAD 164 Query: 202 EDIETLISDIISNRTA 217 D + +++D+ + A Sbjct: 165 NDFDQIVADVYARYQA 180 >gi|46143262|ref|ZP_00135577.2| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207854|ref|YP_001053079.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae L20] gi|303252613|ref|ZP_07338776.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247370|ref|ZP_07529417.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|126096646|gb|ABN73474.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302648581|gb|EFL78774.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856067|gb|EFM88223.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 1202 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 8/129 (6%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEMSHRVLEIITA 88 +A + A+AG+GKT + LRLLL S +L +T TKAA E+ R+ I A Sbjct: 14 TALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNIKA 73 Query: 89 WSHLSDEILSAEITKIQG---KKPNKSDMSKARHLLITILETPGGL-KVQTIHAFCEAIM 144 E + + I + + + + L + I E L + TIH+FC+ ++ Sbjct: 74 CRRFLQEYDAEKTYDINDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIHSFCQKML 133 Query: 145 QQFPLEANI 153 QF ++ + Sbjct: 134 FQFAFDSGM 142 >gi|322688621|ref|YP_004208355.1| DNA helicase [Bifidobacterium longum subsp. infantis 157F] gi|320459957|dbj|BAJ70577.1| DNA helicase [Bifidobacterium longum subsp. infantis 157F] Length = 1343 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT + QR++ L+ P +L LT T+ AA E+ RV Sbjct: 24 VVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLERV 70 >gi|322690607|ref|YP_004220177.1| DNA helicase [Bifidobacterium longum subsp. longum JCM 1217] gi|320455463|dbj|BAJ66085.1| DNA helicase [Bifidobacterium longum subsp. longum JCM 1217] Length = 1343 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT + QR++ L+ P +L LT T+ AA E+ RV Sbjct: 24 VVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLERV 70 >gi|317482570|ref|ZP_07941585.1| UvrD/REP helicase [Bifidobacterium sp. 12_1_47BFAA] gi|316915992|gb|EFV37399.1| UvrD/REP helicase [Bifidobacterium sp. 12_1_47BFAA] Length = 1343 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT + QR++ L+ P +L LT T+ AA E+ RV Sbjct: 24 VVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLERV 70 >gi|312133222|ref|YP_004000561.1| uvrd3 [Bifidobacterium longum subsp. longum BBMN68] gi|311772423|gb|ADQ01911.1| UvrD3 [Bifidobacterium longum subsp. longum BBMN68] Length = 1343 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT + QR++ L+ P +L LT T+ AA E+ RV Sbjct: 24 VVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLERV 70 >gi|307244600|ref|ZP_07526704.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus stomatis DSM 17678] gi|306491981|gb|EFM64030.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus stomatis DSM 17678] Length = 787 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ L+ P+ +L +T T AA EM RV II Sbjct: 25 AGAGSGKTKVLTTRIAYLVEDKQVMPANILAITFTNKAANEMRERVENII 74 >gi|294790511|ref|ZP_06755669.1| UvrD/REP helicase subfamily [Scardovia inopinata F0304] gi|294458408|gb|EFG26761.1| UvrD/REP helicase subfamily [Scardovia inopinata F0304] Length = 1578 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKTH + +R++ L+ + P+ +L LT T+ AAAE+ RV + + A Sbjct: 43 IVAGAGSGKTHAMTERIITLIKRDHIDPNRILGLTFTRKAAAELLSRVTKEVAA 96 >gi|291517284|emb|CBK70900.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Bifidobacterium longum subsp. longum F8] Length = 1343 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT + QR++ L+ P +L LT T+ AA E+ RV Sbjct: 24 VVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLERV 70 >gi|225856772|ref|YP_002738283.1| recombination helicase AddA [Streptococcus pneumoniae P1031] gi|225725942|gb|ACO21794.1| recombination helicase AddA [Streptococcus pneumoniae P1031] Length = 1216 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ +D+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|227546375|ref|ZP_03976424.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622378|ref|ZP_04665409.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|227213356|gb|EEI81228.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514375|gb|EEQ54242.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 1343 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT + QR++ L+ P +L LT T+ AA E+ RV Sbjct: 24 VVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLERV 70 >gi|213692896|ref|YP_002323482.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524357|gb|ACJ53104.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459071|dbj|BAJ69692.1| DNA helicase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 1343 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT + QR++ L+ P +L LT T+ AA E+ RV Sbjct: 24 VVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLERV 70 >gi|157370002|ref|YP_001477991.1| DNA helicase IV [Serratia proteamaculans 568] gi|157321766|gb|ABV40863.1| UvrD/REP helicase [Serratia proteamaculans 568] Length = 684 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 5/87 (5%) Query: 3 YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61 YH+ FQ I+ S+ + S V A AGSGKT +LV R LL A Sbjct: 185 YHDFFQ----NIETSPLNDSQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRQEAE 240 Query: 62 PSTLLCLTHTKAAAAEMSHRVLEIITA 88 P +L L + AA EM+ R+ E + + Sbjct: 241 PGQILLLAFGRQAAEEMNERIQERLGS 267 >gi|23465762|ref|NP_696365.1| ATP-dependent DNA helicase [Bifidobacterium longum NCC2705] gi|23326449|gb|AAN25001.1| widely conserved ATP-dependent DNA helicase; Rep-like protein [Bifidobacterium longum NCC2705] Length = 1343 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT + QR++ L+ P +L LT T+ AA E+ RV Sbjct: 24 VVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLERV 70 >gi|46191135|ref|ZP_00206689.1| COG0210: Superfamily I DNA and RNA helicases [Bifidobacterium longum DJO10A] gi|189439817|ref|YP_001954898.1| superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A] gi|189428252|gb|ACD98400.1| Superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A] Length = 1343 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT + QR++ L+ P +L LT T+ AA E+ RV Sbjct: 24 VVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLERV 70 >gi|332040845|gb|EGI77217.1| UvrD/REP helicase [Hylemonella gracilis ATCC 19624] Length = 846 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 2/78 (2%) Query: 11 SETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68 S + L++ +EQ A + P A + A AGSGKT +L R+ LL P LL + Sbjct: 38 SSDMPLLAGLNTEQRAAVTLPAEPALILAGAGSGKTRVLTTRIAWLLQTGQISPGGLLAV 97 Query: 69 THTKAAAAEMSHRVLEII 86 T T AA EM R+ ++ Sbjct: 98 TFTNKAAREMMTRLQSML 115 >gi|307249590|ref|ZP_07531577.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858445|gb|EFM90514.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 1202 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 8/129 (6%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEMSHRVLEIITA 88 +A + A+AG+GKT + LRLLL S +L +T TKAA E+ R+ I A Sbjct: 14 TALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNIKA 73 Query: 89 WSHLSDEILSAEITKIQG---KKPNKSDMSKARHLLITILETPGGL-KVQTIHAFCEAIM 144 E + + I + + + + L + I E L + TIH+FC+ ++ Sbjct: 74 CRRFLQEYDAEKTYDINDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIHSFCQKML 133 Query: 145 QQFPLEANI 153 QF ++ + Sbjct: 134 FQFAFDSGM 142 >gi|227875854|ref|ZP_03993980.1| UvrD/REP helicase [Mobiluncus mulieris ATCC 35243] gi|306819135|ref|ZP_07452849.1| UvrD/REP helicase subfamily [Mobiluncus mulieris ATCC 35239] gi|227843602|gb|EEJ53785.1| UvrD/REP helicase [Mobiluncus mulieris ATCC 35243] gi|304648111|gb|EFM45422.1| UvrD/REP helicase subfamily [Mobiluncus mulieris ATCC 35239] Length = 1213 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78 T+ ++ + P V A AGSGKT + R++ ++ A P ++L LT TK A AEM Sbjct: 24 TEEQEQVIKAPLEPLLVVAGAGSGKTETIANRLVYWVVNGAISPQSVLGLTFTKKATAEM 83 Query: 79 SHR 81 R Sbjct: 84 GQR 86 >gi|241205526|ref|YP_002976622.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859416|gb|ACS57083.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 826 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 33 SAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 S V A AG+GKT +L R+ +L A PS +L +T T AA EM R+ Sbjct: 73 SVLVLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTNKAAREMKERI 123 >gi|254286015|ref|ZP_04960976.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae AM-19226] gi|150423925|gb|EDN15865.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae AM-19226] Length = 1208 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 23/133 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + A D +L + + + +D S A LL+ + TIH F Sbjct: 85 LHDARLAFARGASDDPLLRSLLAEF-------TDHSLAVSLLLNAERQMDEAAIFTIHGF 137 Query: 140 CEAIMQQFPLEAN 152 C+ ++ Q E+ Sbjct: 138 CQRMLTQNAFESG 150 >gi|153809769|ref|ZP_01962437.1| hypothetical protein RUMOBE_00150 [Ruminococcus obeum ATCC 29174] gi|149833947|gb|EDM89027.1| hypothetical protein RUMOBE_00150 [Ruminococcus obeum ATCC 29174] Length = 744 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 41/158 (25%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 D ++ + E +L +D + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 6 DTLNDRQKEAVLHTDG--PLLILAGAGSGKTRVLTHRIAYLIAEKGVNPWNILAITFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV D+I +E G + V Sbjct: 64 AAHEMRERV-----------DKIAGSE---------------------------GGSVWV 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ C I+++ ++F I D + K LI+E Sbjct: 86 STFHSTCVRILRRHIDRLGYDNNFTIYDADDQKTLIKE 123 >gi|15671986|ref|NP_266160.1| ATP-dependent exonuclease subunit a [Lactococcus lactis subsp. lactis Il1403] gi|81538647|sp|Q9CJI9|ADDA_LACLA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|12722839|gb|AAK04102.1|AE006239_4 subunit A of ATP-dependent exonuclease [Lactococcus lactis subsp. lactis Il1403] Length = 1203 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV-LEIITAWS 90 ++ VSA+AGSGKT ++ QR++ + L T TK AA+E+ R+ ++ A Sbjct: 19 KNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAASELRMRLERDLKKARQ 78 Query: 91 HLSDEILSAEIT 102 SDE + +T Sbjct: 79 ESSDENQACRLT 90 >gi|325120853|emb|CBZ56408.1| Helicase-like protein nhl, related [Neospora caninum Liverpool] Length = 991 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 2/53 (3%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A GSGKT + R++RLLL P +L LT TK A E+ RVL+ +++ Sbjct: 432 VIAGPGSGKTTAITARIIRLLLEGEGP--ILALTFTKRGAEELRERVLDGLSS 482 >gi|307256414|ref|ZP_07538196.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865044|gb|EFM96945.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 1202 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEMSHRVLEIITA 88 +A + A+AG+GKT + LRLLL S +L +T TKAA E+ R+ I A Sbjct: 14 TALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNIKA 73 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARH----------LLITILETPGGL-KVQTIH 137 E AE K + +D H L + I E L + TIH Sbjct: 74 CRRFLQEY-DAE------KSYDANDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIH 126 Query: 138 AFCEAIMQQFPLEANI 153 +FC+ ++ QF ++ + Sbjct: 127 SFCQKMLFQFAFDSGM 142 >gi|291528122|emb|CBK93708.1| Superfamily I DNA and RNA helicases [Eubacterium rectale M104/1] Length = 763 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 79/195 (40%), Gaps = 45/195 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D++++ + E +L ++ + A AGSGKT +L R L+ +P ++ +T T Sbjct: 3 LDMLNEQQREAVLTTEG--PLLILAGAGSGKTRVLTYRTAYLIDECGVNPYNIMAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +++ S + Sbjct: 61 KAAGEMRERIDDMVGYGSE--------------------------------------SIW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T H+ C I++++ ++F I D + K L+++ K + +D +K F Sbjct: 83 VSTFHSTCVRILRRYIDRLGYDTNFTIYDADDQKALMKDICK----RLEIDTKMYKEKMF 138 Query: 193 YEILEISNDEDIETL 207 ++ + DE I+ + Sbjct: 139 LNVISSAKDEMIDPI 153 >gi|269977489|ref|ZP_06184461.1| UvrD/REP helicase [Mobiluncus mulieris 28-1] gi|269934405|gb|EEZ90967.1| UvrD/REP helicase [Mobiluncus mulieris 28-1] Length = 1213 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78 T+ ++ + P V A AGSGKT + R++ ++ A P ++L LT TK A AEM Sbjct: 24 TEEQEQVIKAPLEPLLVVAGAGSGKTETIANRLVYWVVNGAISPQSVLGLTFTKKATAEM 83 Query: 79 SHR 81 R Sbjct: 84 GQR 86 >gi|269792359|ref|YP_003317263.1| UvrD/REP helicase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099994|gb|ACZ18981.1| UvrD/REP helicase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 653 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 A AGSGKT +L +++ L+ PS +L +T T AA EM RV ++ H Sbjct: 32 AGAGSGKTRVLTRKIAYLISHKGVSPSKILAVTFTNKAAGEMRQRVERLLGGSLH 86 >gi|240081594|ref|ZP_04726137.1| UvrD [Neisseria gonorrhoeae FA19] gi|240124369|ref|ZP_04737325.1| UvrD [Neisseria gonorrhoeae PID332] gi|268597691|ref|ZP_06131858.1| DNA helicase II [Neisseria gonorrhoeae FA19] gi|268682996|ref|ZP_06149858.1| DNA helicase II [Neisseria gonorrhoeae PID332] gi|268551479|gb|EEZ46498.1| DNA helicase II [Neisseria gonorrhoeae FA19] gi|268623280|gb|EEZ55680.1| DNA helicase II [Neisseria gonorrhoeae PID332] Length = 735 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHR 81 AA EM R Sbjct: 69 KAAKEMQTR 77 >gi|307152628|ref|YP_003888012.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7822] gi|306982856|gb|ADN14737.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7822] Length = 772 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 18/143 (12%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+ P +L +T T AA EM R+ + +D Sbjct: 28 VVAGAGSGKTRALTYRIAHLIRYHQVEPEHILAVTFTNKAAREMRERLERL------FAD 81 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILET-PGGLKVQTIHAFCEAIMQ------QF 147 E+ + G++ + + + LL + T L + T H+ C I++ Q Sbjct: 82 ELAQEKY----GQRFSLLSEYEQKQLLSKVYRTVTKKLWIGTFHSLCSRILRYDINKYQD 137 Query: 148 PLEANITSHFAIADEEQSKKLIE 170 + S+F+I DE ++ LI+ Sbjct: 138 ERGRSWKSNFSIVDESDAQSLIK 160 >gi|167631017|ref|YP_001681516.1| ATP-dependent deoxyribonuclease subunit a [Heliobacterium modesticaldum Ice1] gi|251764526|sp|B0TDI0|ADDA_HELMI RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|167593757|gb|ABZ85505.1| ATP-dependent deoxyribonuclease subunit a [Heliobacterium modesticaldum Ice1] Length = 1396 Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 22/121 (18%) Query: 44 KTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITK 103 KT +LV+R++ ++ LL +T T AAAAEM R+ +TK Sbjct: 53 KTAVLVERLIGIIKEGVDVDRLLVVTFTNAAAAEMRERI---------------RTALTK 97 Query: 104 IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE 163 + P+++ + + LL + T+H+FC +++++ ++ F +ADE Sbjct: 98 ELARHPHQTWLRQQLVLL-------NRATITTLHSFCLDLVRKYYYRLDLDPAFRVADET 150 Query: 164 Q 164 + Sbjct: 151 E 151 >gi|49474442|ref|YP_032484.1| DNA helicase II [Bartonella quintana str. Toulouse] gi|49239946|emb|CAF26350.1| DNA helicase II [Bartonella quintana str. Toulouse] Length = 776 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L + A P +L +T T AA EM R+ E+I Sbjct: 64 VLAGAGTGKTRVLTTRISHILRSGLASPKQILAVTFTNKAALEMKMRIGELI 115 >gi|296453651|ref|YP_003660794.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301] gi|296183082|gb|ADG99963.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301] Length = 1340 Score = 40.4 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT + QR++ L+ P +L LT T+ AA E+ RV Sbjct: 24 VVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLERV 70 >gi|239998017|ref|ZP_04717941.1| UvrD [Neisseria gonorrhoeae 35/02] gi|240113875|ref|ZP_04728365.1| UvrD [Neisseria gonorrhoeae MS11] gi|240116607|ref|ZP_04730669.1| UvrD [Neisseria gonorrhoeae PID18] gi|240124760|ref|ZP_04737646.1| UvrD [Neisseria gonorrhoeae SK-92-679] gi|268593866|ref|ZP_06128033.1| DNA helicase II [Neisseria gonorrhoeae 35/02] gi|268599941|ref|ZP_06134108.1| DNA helicase II [Neisseria gonorrhoeae MS11] gi|268602276|ref|ZP_06136443.1| DNA helicase II [Neisseria gonorrhoeae PID18] gi|268683334|ref|ZP_06150196.1| DNA helicase II [Neisseria gonorrhoeae SK-92-679] gi|268547255|gb|EEZ42673.1| DNA helicase II [Neisseria gonorrhoeae 35/02] gi|268584072|gb|EEZ48748.1| DNA helicase II [Neisseria gonorrhoeae MS11] gi|268586407|gb|EEZ51083.1| DNA helicase II [Neisseria gonorrhoeae PID18] gi|268623618|gb|EEZ56018.1| DNA helicase II [Neisseria gonorrhoeae SK-92-679] Length = 735 Score = 40.4 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHR 81 AA EM R Sbjct: 69 KAAKEMQTR 77 >gi|240015007|ref|ZP_04721920.1| UvrD [Neisseria gonorrhoeae DGI18] gi|240122076|ref|ZP_04735038.1| UvrD [Neisseria gonorrhoeae PID24-1] gi|254494631|ref|ZP_05107802.1| DNA helicase II [Neisseria gonorrhoeae 1291] gi|226513671|gb|EEH63016.1| DNA helicase II [Neisseria gonorrhoeae 1291] Length = 735 Score = 40.4 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHR 81 AA EM R Sbjct: 69 KAAKEMQTR 77 >gi|261365067|ref|ZP_05977950.1| exodeoxyribonuclease V, beta subunit [Neisseria mucosa ATCC 25996] gi|288566486|gb|EFC88046.1| exodeoxyribonuclease V, beta subunit [Neisseria mucosa ATCC 25996] Length = 1213 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 28/146 (19%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV----------LE 84 + A+AG+GKT+ + RL++ P ++L +T TKAA AE+ R+ LE Sbjct: 23 IEASAGTGKTYGIAALFTRLVVLEQMPVESILTVTFTKAATAELKTRLRARLDEVLQALE 82 Query: 85 IITAWSHLSDEILSAEITKIQGK-------KPNKSDMSKARHLLITILETPGGLK---VQ 134 + +LSD++ + G K + S+AR L++ + G + Sbjct: 83 SVEDTDNLSDDLAAYCRDNHPGDVFITGLLKQALAQESRAR-LIVRLKAAIGQFDNAAIY 141 Query: 135 TIHAFCEAIMQQF------PLEANIT 154 TIH FC+ I++ + P++ +T Sbjct: 142 TIHGFCQRILRDYAFLCRAPMDVELT 167 >gi|146342459|ref|YP_001207507.1| DNA helicase II [Bradyrhizobium sp. ORS278] gi|146195265|emb|CAL79290.1| DNA helicase II [Bradyrhizobium sp. ORS278] Length = 865 Score = 40.4 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L + A P +L +T T AA EM R+ E++ Sbjct: 57 VLAGAGTGKTRVLTTRIAHILSMGRARPGEILSVTFTNKAAREMKTRLAEML 108 >gi|91069901|gb|ABE10830.1| UvrD/REP helicase [uncultured Prochlorococcus marinus clone ASNC2150] Length = 802 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 2/54 (3%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT L R+ L+ N+ P +L +T T AA EM R LE++ A Sbjct: 29 VIAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAKEMKAR-LEVLLA 81 >gi|86158934|ref|YP_465719.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C] gi|85775445|gb|ABC82282.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C] Length = 1192 Score = 40.4 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 20/139 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-----HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 VSA AGSGKT LV+ +RLL +A P L +T T+ AA E Sbjct: 23 VSAGAGSGKTTALVELCVRLLEGSALGSPCEPRELAAITFTEKAAQE------------- 69 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 L + + A + + + + +AR L L + V TIH FC ++++ E Sbjct: 70 -LEERLRGAVAARARAAREADPESPEARAWL-ERLHGLDAMAVGTIHGFCGRLLREHAPE 127 Query: 151 ANITSHFAIADEEQSKKLI 169 A + A+ +E+++ I Sbjct: 128 AGLDPEAAVLEEDRASGWI 146 >gi|332042510|gb|EGI78712.1| UvrD/REP helicase [Lacinutrix algicola 5H-3-7-4] Length = 779 Score = 40.4 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ +L LT T AA EM R+ EI+ Sbjct: 25 VIAGAGSGKTRVLTYRIAYLMNQGVDSFNILALTFTNKAAKEMKGRIAEIV 75 >gi|325989603|ref|YP_004249302.1| DNA helicase, UvrD type [Mycoplasma suis KI3806] gi|323574688|emb|CBZ40344.1| DNA helicase, UvrD type [Mycoplasma suis] Length = 744 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 2/66 (3%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 +++ + R+ + A GSGKT ++++++ R L+N P +L +T+T E+ R+ Sbjct: 23 EIINFNENRNVGIIAGPGSGKTFVIIEKI-RFYLSNKIEPRKILLVTYTNRGIIEIKQRI 81 Query: 83 LEIITA 88 + + A Sbjct: 82 NKFVKA 87 >gi|315122506|ref|YP_004062995.1| DNA helicase II [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495908|gb|ADR52507.1| DNA helicase II [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 681 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 42/135 (31%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AG+GKT +L+ R+L L+ P S +L +T T A EM +R+ Sbjct: 54 AGAGTGKTTVLIARMLHLIYQKKIPASKILAMTFTNQAIQEMKNRL------------AC 101 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 LS I +I QT H+F +I++Q + + Sbjct: 102 LSGHIPQI-----------------------------QTFHSFSASILRQHGNVVGLPTD 132 Query: 157 FAIADEEQSKKLIEE 171 F I D S+ +I+E Sbjct: 133 FTILDSGDSRTIIKE 147 >gi|303247976|ref|ZP_07334243.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ] gi|302490700|gb|EFL50603.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ] Length = 1070 Score = 40.4 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 29/51 (56%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 R V A G+GKTH L+ ++ LL A P +L +T T+ AA E+ R+ Sbjct: 488 RHLLVVAGPGTGKTHTLLAKIRALLDTGAPPGDILAVTFTRRAAGELRERL 538 >gi|289423398|ref|ZP_06425202.1| ATP-dependent DNA helicase PcrA [Peptostreptococcus anaerobius 653-L] gi|289156156|gb|EFD04817.1| ATP-dependent DNA helicase PcrA [Peptostreptococcus anaerobius 653-L] Length = 786 Score = 40.4 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ N +PS +L +T T AA EM RV II Sbjct: 23 ILAGAGSGKTKVLTTRISYLVEDKNINPSNILAITFTNKAANEMRERVESII 74 >gi|269977462|ref|ZP_06184434.1| ATP-dependent DNA helicase PcrA [Mobiluncus mulieris 28-1] gi|306819108|ref|ZP_07452822.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35239] gi|269934378|gb|EEZ90940.1| ATP-dependent DNA helicase PcrA [Mobiluncus mulieris 28-1] gi|304648084|gb|EFM45395.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35239] Length = 900 Score = 40.4 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 81/226 (35%), Gaps = 62/226 (27%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + P + V A AGSGKT +L +R+ LL P +L +T T AA EM RV Sbjct: 67 THPGGALLVMAGAGSGKTRVLTRRIAWLLATGRVRPWEILAITFTNKAAGEMRERV---- 122 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 E L K + V T H+ C I++ Sbjct: 123 --------ETLVGNAAKY--------------------------MWVSTFHSSCVRILRA 148 Query: 147 FPLEANITSHFAIADEEQSKKLIEE------------AKKSTLASIMLDNNEELKKAFYE 194 IT F+I D +K L+ KS A I NE ++ A + Sbjct: 149 EAETLGITRSFSIYDTADTKALLTRIIKGRGLDPKRFTPKSFAARISNAKNELVEPATFA 208 Query: 195 ILEISNDEDIETLISDIISNRTAL--KLIFFFFS-------YLWRR 231 E++ + I L ++I + L + F F YLWRR Sbjct: 209 --EMAAPDKISQLTAEIYAEYQQLLRRANAFDFDDLIAEVVYLWRR 252 >gi|219685727|ref|ZP_03540539.1| exodeoxyribonuclease V, beta subunit [Borrelia garinii Far04] gi|219672722|gb|EED29749.1| exodeoxyribonuclease V, beta subunit [Borrelia garinii Far04] Length = 1169 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA--WSHL 92 + A+AG+GKTHIL V+ L+ + + +L LT T A EM R+L+ I + + Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTNKATEEMHTRILKAIESAYFGSK 75 Query: 93 SDEIL 97 ++EIL Sbjct: 76 TNEIL 80 >gi|182684115|ref|YP_001835862.1| exonuclease RexA [Streptococcus pneumoniae CGSP14] gi|303255773|ref|ZP_07341815.1| exonuclease RexA [Streptococcus pneumoniae BS455] gi|251764565|sp|B2IPX3|ADDA_STRPS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|182629449|gb|ACB90397.1| exonuclease RexA [Streptococcus pneumoniae CGSP14] gi|301801979|emb|CBW34707.1| putative ATP-dependent exonuclease subunit A [Streptococcus pneumoniae INV200] gi|302597285|gb|EFL64389.1| exonuclease RexA [Streptococcus pneumoniae BS455] Length = 1216 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ +D+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|149013113|ref|ZP_01833959.1| exonuclease RexA [Streptococcus pneumoniae SP19-BS75] gi|147763058|gb|EDK70001.1| exonuclease RexA [Streptococcus pneumoniae SP19-BS75] Length = 1216 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ +D+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|330445114|ref|ZP_08308766.1| exodeoxyribonuclease V, beta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489305|dbj|GAA03263.1| exodeoxyribonuclease V, beta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 1210 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 31/156 (19%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT +V LRLLL + + +L +T T+AA AE+ R+ + Sbjct: 23 IEASAGTGKTFTIVSLYLRLLLGHGNDDCAHIKPLDVDQILVVTFTEAATAELRDRIRKG 82 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKS----------DMSKARHLLITILETPGGLKVQT 135 I D +S ++ + P K D A +L V T Sbjct: 83 I------RDAYVS--FSRGESVGPFKDTISVLLNDIHDHKYAARVLKDAERRMDEASVYT 134 Query: 136 IHAFCEAIMQQFPLEAN--ITSHFAIADEEQSKKLI 169 IH FC+ ++ Q E+ + F + DE Q K L+ Sbjct: 135 IHGFCQRMLTQNAFESGCRFNNEF-VTDESQLKSLV 169 >gi|313887113|ref|ZP_07820809.1| UvrD/REP helicase [Porphyromonas asaccharolytica PR426713P-I] gi|312923342|gb|EFR34155.1| UvrD/REP helicase [Porphyromonas asaccharolytica PR426713P-I] Length = 1123 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 5/116 (4%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTKAAAAEMSHRVL-EIITAWSHLSD 94 A+AG+GKTH + + LR +L S + +T T A E+ R E+ T + + Sbjct: 13 ASAGAGKTHTMTEAFLRHVLEKPRSSYQEVQAVTFTNLATRELKERFFKELYTLATKPKE 72 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 K S +KAR L +IL GGL+V+TI +F + I+ +E Sbjct: 73 SPFYDSFNKEGYSDAQLS--TKARTALQSILFDYGGLRVKTIDSFFQDIIHALAIE 126 >gi|268590116|ref|ZP_06124337.1| helicase IV [Providencia rettgeri DSM 1131] gi|291314385|gb|EFE54838.1| helicase IV [Providencia rettgeri DSM 1131] Length = 683 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 5/81 (6%) Query: 3 YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61 YH+ FQ+ ET L S+ L + + V A AGSGKT +LV R L+L A Sbjct: 185 YHDFFQQ-VETSPL---NYSQSLSVINGEDNVLVLAGAGSGKTSVLVARAGWLILRGLAK 240 Query: 62 PSTLLCLTHTKAAAAEMSHRV 82 P +L L + AA EM+ R+ Sbjct: 241 PEQILLLAFGRKAADEMNGRI 261 >gi|238923773|ref|YP_002937289.1| ATP-dependent DNA helicase PcrA [Eubacterium rectale ATCC 33656] gi|238875448|gb|ACR75155.1| ATP-dependent DNA helicase PcrA [Eubacterium rectale ATCC 33656] Length = 763 Score = 40.4 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 79/195 (40%), Gaps = 45/195 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +D++++ + E +L ++ + A AGSGKT +L R L+ +P ++ +T T Sbjct: 3 LDMLNEQQREAVLTTEG--PLLILAGAGSGKTRVLTYRTAYLIDECGVNPYNIMAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +++ S + Sbjct: 61 KAAGEMRERIDDMVGYGSE--------------------------------------SIW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T H+ C I++++ ++F I D + K L+++ K + +D +K F Sbjct: 83 VSTFHSTCVRILRRYIDRLGYDTNFTIYDADDQKALMKDICK----RLEIDTKMYKEKMF 138 Query: 193 YEILEISNDEDIETL 207 ++ + DE I+ + Sbjct: 139 LNVISSAKDEMIDPI 153 >gi|283796111|ref|ZP_06345264.1| ATP-dependent DNA helicase PcrA [Clostridium sp. M62/1] gi|291076326|gb|EFE13690.1| ATP-dependent DNA helicase PcrA [Clostridium sp. M62/1] Length = 830 Score = 40.4 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ +P ++ +T T AAAEM RV +I+ Sbjct: 25 VLAGAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTNKAAAEMRERVDQIV 76 >gi|221194558|ref|ZP_03567615.1| ATP-dependent DNA helicase PcrA [Atopobium rimae ATCC 49626] gi|221185462|gb|EEE17852.1| ATP-dependent DNA helicase PcrA [Atopobium rimae ATCC 49626] Length = 843 Score = 40.4 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 61/152 (40%), Gaps = 49/152 (32%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ ++ P +L +T T AAAEM R Sbjct: 39 VLAGAGSGKTRVLTYRIAHMIADEGVRPWQILAITFTNKAAAEMRER------------- 85 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK---VQTIHAFCEAIMQQFPLEA 151 L T+L PGG + V T HA C ++++ Sbjct: 86 --------------------------LGTLL--PGGTRGMWVCTFHAMCVRMLREDSEAV 117 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 +F I D++ SK+L+ K+ +A + +D Sbjct: 118 GFGPNFTIYDDDDSKRLV----KAIMADLDID 145 >gi|325973160|ref|YP_004250224.1| DNA helicase II [Mycoplasma suis str. Illinois] gi|323651762|gb|ADX97844.1| DNA helicase II [Mycoplasma suis str. Illinois] Length = 744 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 2/66 (3%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 +++ + R+ + A GSGKT ++++++ R L+N P +L +T+T E+ R+ Sbjct: 23 EIINFNENRNVGIIAGPGSGKTFVIIEKI-RFYLSNKIEPRKILLVTYTNRGIIEIKQRI 81 Query: 83 LEIITA 88 + + A Sbjct: 82 NKFVKA 87 >gi|302330242|gb|ADL20436.1| Putative helicase [Corynebacterium pseudotuberculosis 1002] Length = 1074 Score = 40.4 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 5/82 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSH 91 V A AG+GKT + RV+ L+ N A+P +L LT T+ AA ++S R+ LE + Sbjct: 34 VVAGAGAGKTETMAARVVWLVANNIANPDRILGLTFTRKAAQQLSQRIRGRLEQLAGMDA 93 Query: 92 LSDEILSAEIT-KIQGKKPNKS 112 L D S E++ K++ P S Sbjct: 94 LRDIDPSGELSYKLEAIAPTVS 115 >gi|229829264|ref|ZP_04455333.1| hypothetical protein GCWU000342_01351 [Shuttleworthia satelles DSM 14600] gi|229792427|gb|EEP28541.1| hypothetical protein GCWU000342_01351 [Shuttleworthia satelles DSM 14600] Length = 753 Score = 40.4 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 41/165 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S+ +DL+++ + + +L ++ + A AGSGKT +L R L+ P ++ +T Sbjct: 2 SKILDLLNEQQRDGVLTTEG--PVLILAGAGSGKTRVLTHRAAYLIDEKGVAPYQIMAIT 59 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ ++++ E Sbjct: 60 FTNKAAEEMRERINKLVS---------FGGE----------------------------- 81 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + V T H+ C I+++F S F I D + K LI++ K Sbjct: 82 AVWVATFHSSCVKILRRFADRVGYDSRFTIYDGDDQKSLIKDVCK 126 >gi|237749450|ref|ZP_04579930.1| ATP-dependent DNA helicase Rep [Oxalobacter formigenes OXCC13] gi|229380812|gb|EEO30903.1| ATP-dependent DNA helicase Rep [Oxalobacter formigenes OXCC13] Length = 685 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 37/137 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ + + + + LT T AAAEM R+ +++T Sbjct: 24 VLAGAGSGKTRVITQKIAHLIDSGVYEAKNIAALTFTNKAAAEMQERISKLLT------- 76 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +P ++ L + T H+ I++Q E N+ Sbjct: 77 -------------EPKQASQ----------------LTISTFHSLGVKILRQEAAELNLK 107 Query: 155 SHFAIADEEQSKKLIEE 171 F+I D + L+++ Sbjct: 108 DRFSILDSDDCFSLVQD 124 >gi|225854627|ref|YP_002736139.1| recombination helicase AddA [Streptococcus pneumoniae JJA] gi|225723772|gb|ACO19625.1| recombination helicase AddA [Streptococcus pneumoniae JJA] Length = 1216 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ +D+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|219684318|ref|ZP_03539262.1| exodeoxyribonuclease V, beta subunit [Borrelia garinii PBr] gi|219672307|gb|EED29360.1| exodeoxyribonuclease V, beta subunit [Borrelia garinii PBr] Length = 1169 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA--WSHL 92 + A+AG+GKTHIL V+ L+ + + +L LT T A EM R+L+ I + + Sbjct: 16 IEASAGTGKTHILENVVINLIKTKLYSINEILVLTFTNKATEEMHTRILKAIESAYFGSK 75 Query: 93 SDEIL 97 ++EIL Sbjct: 76 TNEIL 80 >gi|307704790|ref|ZP_07641686.1| recombination helicase AddA [Streptococcus mitis SK597] gi|307621699|gb|EFO00740.1| recombination helicase AddA [Streptococcus mitis SK597] Length = 1216 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 20/134 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ Sbjct: 45 VSASAGSGKTFVMAERILDQLTRGVEISQLFISTFTVKAATELKERLEKKIS-------- 96 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +IQ SD+ +HL + + P + T+ +F + + + +I Sbjct: 97 ------QQIQ----ESSDVDLKQHLGRQLADLPNA-AIGTMDSFTQKFLGKHGYLIDIAP 145 Query: 156 HFAIADEEQSKKLI 169 +F I + QS++L+ Sbjct: 146 NFRIL-QNQSEQLL 158 >gi|303249732|ref|ZP_07335936.1| exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251919|ref|ZP_07533820.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651299|gb|EFL81451.1| exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860611|gb|EFM92623.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 1202 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEMSHRVLEIITA 88 +A + A+AG+GKT + LRLLL S +L +T TKAA E+ R+ I A Sbjct: 14 TALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNIKA 73 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARH----------LLITILETPGGL-KVQTIH 137 E AE K + +D H L + I E L + TIH Sbjct: 74 CRRFLQEY-DAE------KSYDANDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIH 126 Query: 138 AFCEAIMQQFPLEANI 153 +FC+ ++ QF ++ + Sbjct: 127 SFCQKMLFQFAFDSGM 142 >gi|189466065|ref|ZP_03014850.1| hypothetical protein BACINT_02435 [Bacteroides intestinalis DSM 17393] gi|189434329|gb|EDV03314.1| hypothetical protein BACINT_02435 [Bacteroides intestinalis DSM 17393] Length = 784 Score = 40.4 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 51/139 (36%), Gaps = 37/139 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT +L ++ LL P +L LT T AA EM R+ + D+ Sbjct: 26 VIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAAREMKERIAR------QVGDQ 79 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +ARHL + T H+ I+ + TS Sbjct: 80 --------------------RARHLWMG-----------TFHSIFLRILHVEAVNIGFTS 108 Query: 156 HFAIADEEQSKKLIEEAKK 174 F I D SK L+ K Sbjct: 109 QFTIYDTADSKSLMRSIIK 127 >gi|216263506|ref|ZP_03435501.1| exodeoxyribonuclease V, beta subunit [Borrelia afzelii ACA-1] gi|215980350|gb|EEC21171.1| exodeoxyribonuclease V, beta subunit [Borrelia afzelii ACA-1] Length = 1170 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 3/65 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII--TAWSHL 92 + A+AG+GKT+IL V+ L+ + + +L LT TK A EM R+L+ I ++ Sbjct: 16 IEASAGTGKTYILENLVINLMKTKLYSINEILVLTFTKKATEEMHARILKAIENAYFNSK 75 Query: 93 SDEIL 97 ++EIL Sbjct: 76 TNEIL 80 >gi|332177512|gb|AEE13202.1| UvrD/REP helicase [Porphyromonas asaccharolytica DSM 20707] Length = 1123 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 5/116 (4%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTKAAAAEMSHRVL-EIITAWSHLSD 94 A+AG+GKTH + + LR +L S + +T T A E+ R E+ T + + Sbjct: 13 ASAGAGKTHTMTEAFLRHVLEKPRSSYQEVQAVTFTNLATRELKERFFKELYTLATKPQE 72 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 K S +KAR L +IL GGL+V+TI +F + I+ +E Sbjct: 73 SPFYDSFNKEGYSDAQLS--TKARTALQSILFDYGGLRVKTIDSFFQDIIHALAIE 126 >gi|308172547|ref|YP_003919252.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens DSM 7] gi|307605411|emb|CBI41782.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens DSM 7] gi|328552312|gb|AEB22804.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens TA208] gi|328910656|gb|AEB62252.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens LL3] Length = 739 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 6/61 (9%) Query: 38 ANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 A AGSGKT +L R+ L+A H P +L +T T AA EM RV I+ +DE Sbjct: 31 AGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMKERVESILGPG---ADE 86 Query: 96 I 96 I Sbjct: 87 I 87 >gi|237752434|ref|ZP_04582914.1| ATP-dependent helicase [Helicobacter winghamensis ATCC BAA-430] gi|229375923|gb|EEO26014.1| ATP-dependent helicase [Helicobacter winghamensis ATCC BAA-430] Length = 679 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 31/53 (58%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 P+ V A+AG+GKT +V R+ LL P+ +L LT T AA+EM R+ Sbjct: 17 PSGHNLVIASAGTGKTSTIVGRISFLLQNGILPNEILLLTFTNKAASEMLSRL 69 >gi|221194693|ref|ZP_03567750.1| UvrD/REP helicase [Atopobium rimae ATCC 49626] gi|221185597|gb|EEE17987.1| UvrD/REP helicase [Atopobium rimae ATCC 49626] Length = 1169 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 47/197 (23%), Positives = 81/197 (41%), Gaps = 42/197 (21%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL------ANAHPSTL- 65 T+D S T ++ + +V+A AGSGKT L +RV+ L A+ +L Sbjct: 2 TLDFHSYTPGQKQAIQTLDKPLFVAAGAGSGKTFTLTKRVVWALSKGSGTDGGAYLDSLD 61 Query: 66 --LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 L +T T AA E+ RV + L D+ L+ + I Sbjct: 62 QALIITFTNEAAKEIKERVRSALEE-EGLFDQALNVDSAWI------------------- 101 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 TIH+ C I++ + I F + DE + +L++E+ + L+S L Sbjct: 102 ----------STIHSMCARILRSHAFDLGIDPDFIVLDEHRRNELLQESLEEVLSS--LR 149 Query: 184 NNEELKKAFYEILEISN 200 +E K F+ + ++ + Sbjct: 150 ETDEY-KGFFSVFDLKD 165 >gi|126728040|ref|ZP_01743856.1| hypothetical protein SSE37_18657 [Sagittula stellata E-37] gi|126711005|gb|EBA10055.1| hypothetical protein SSE37_18657 [Sagittula stellata E-37] Length = 729 Score = 40.4 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 36/60 (60%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 ++++A P A V A G+GKT + +R+ RLL + +PS + + +++ A AE+ RV Sbjct: 191 DRVVALPPDARAVVVAGPGAGKTFTIQRRICRLLESGLNPSAISVIAYSRTAVAELLARV 250 >gi|55981396|ref|YP_144693.1| UvrD protein [Thermus thermophilus HB8] gi|55772809|dbj|BAD71250.1| UvrD protein [Thermus thermophilus HB8] Length = 692 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A V A AGSGKT +V RV L+ PS +L +T T AA EM R+ ++ Sbjct: 23 PALVVAGAGSGKTRTVVHRVAYLVARRGVFPSEILAVTFTNKAAEEMRERLRGLVPG 79 >gi|296130310|ref|YP_003637560.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109] gi|296022125|gb|ADG75361.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109] Length = 1162 Score = 40.4 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 3/62 (4%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77 T ++ + P R + V A AGSGKT + RV+ L+AN P +L LT T+ AA E Sbjct: 27 TDEQRAVIEAPLRPSLVVAGAGSGKTETMAARVV-WLVANGLVAPDQVLGLTFTRKAAGE 85 Query: 78 MS 79 +S Sbjct: 86 LS 87 >gi|17986879|ref|NP_539513.1| DNA helicase II [Brucella melitensis bv. 1 str. 16M] gi|17982519|gb|AAL51777.1| DNA helicase ii [Brucella melitensis bv. 1 str. 16M] Length = 827 Score = 40.4 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A+PS +L +T T AA EM R+ ++ Sbjct: 34 VLAGAGTGKTRVLTTRIAHILSTGLAYPSQILAVTFTNKAAREMKERIGHLV 85 >gi|2618592|dbj|BAA23380.1| UvrD [Thermus thermophilus] Length = 692 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A V A AGSGKT +V RV L+ PS +L +T T AA EM R+ ++ Sbjct: 23 PALVVAGAGSGKTRTVVHRVAYLVARRGVFPSEILAVTFTNKAAEEMRERLRGLVPG 79 >gi|310819562|ref|YP_003951920.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1] gi|309392634|gb|ADO70093.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1] Length = 781 Score = 40.4 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 V + AGSGKT ++ +RV L+ + P +L +T T AA EM R+++++ A +H Sbjct: 36 VLSGAGSGKTRVITRRVAHLVKVRRVFPWRILAVTFTNKAAREMRERLVQLLGAQAH 92 >gi|154685156|ref|YP_001420317.1| PcrA [Bacillus amyloliquefaciens FZB42] gi|154351007|gb|ABS73086.1| PcrA [Bacillus amyloliquefaciens FZB42] Length = 739 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 6/61 (9%) Query: 38 ANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 A AGSGKT +L R+ L+A H P +L +T T AA EM RV I+ +DE Sbjct: 31 AGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMKERVESILGPG---ADE 86 Query: 96 I 96 I Sbjct: 87 I 87 >gi|124025096|ref|YP_001014212.1| UvrD/REP helicase [Prochlorococcus marinus str. NATL1A] gi|123960164|gb|ABM74947.1| UvrD/REP helicase [Prochlorococcus marinus str. NATL1A] Length = 805 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 28/189 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+ PS++L +T T AA EM R LE+ Sbjct: 29 VVAGAGSGKTRALTHRIAHLITEYKVDPSSILAVTFTNKAAREMKDR-LEL--------- 78 Query: 95 EILSAEITKIQGKKP-NKSDMSKARHLLITI-LETPGGLKVQTIHAFCEAIMQ------Q 146 +L+ ++ + KP +++ R + I E L + T HA +++ + Sbjct: 79 -LLAKRLSSLTHGKPWTALQVAEQREIRNRIHREISRELWIGTFHALFSRLLRFDIDKFK 137 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILEISNDEDIE 205 P T F+I DE ++ LI+E + LD E KK + I N + Sbjct: 138 DPEGLTWTKQFSIYDETDAQSLIKEI---VTQDLQLDPKRFEPKKVRWAISNAKN----Q 190 Query: 206 TLISDIISN 214 L+ D +SN Sbjct: 191 CLLPDDLSN 199 >gi|111115465|ref|YP_710083.1| exodeoxyribonuclease V, beta chain [Borrelia afzelii PKo] gi|110890739|gb|ABH01907.1| exodeoxyribonuclease V, beta chain [Borrelia afzelii PKo] Length = 1170 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 3/65 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII--TAWSHL 92 + A+AG+GKT+IL V+ L+ + + +L LT TK A EM R+L+ I ++ Sbjct: 16 IEASAGTGKTYILENLVINLMKTKLYSINEILVLTFTKKATEEMHARILKAIENAYFNSK 75 Query: 93 SDEIL 97 ++EIL Sbjct: 76 TNEIL 80 >gi|72383505|ref|YP_292860.1| ATP-dependent DNA helicase Rep [Prochlorococcus marinus str. NATL2A] gi|72003355|gb|AAZ59157.1| ATP-dependent DNA helicase, Rep family [Prochlorococcus marinus str. NATL2A] Length = 805 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 28/189 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+ PS++L +T T AA EM R LE+ Sbjct: 29 VVAGAGSGKTRALTHRIAHLITEYKVDPSSILAVTFTNKAAREMKDR-LEL--------- 78 Query: 95 EILSAEITKIQGKKP-NKSDMSKARHLLITI-LETPGGLKVQTIHAFCEAIMQ------Q 146 +L+ ++ + KP +++ R + I E L + T HA +++ + Sbjct: 79 -LLAKRLSSLTHGKPWTALQVAEQREIRNRIHREISRELWIGTFHALFSRLLRFDIDKFK 137 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILEISNDEDIE 205 P T F+I DE ++ LI+E + LD E KK + I N + Sbjct: 138 DPEGLTWTKQFSIYDETDAQSLIKEI---VTQDLQLDPKRFEPKKVRWAISNAKN----Q 190 Query: 206 TLISDIISN 214 L+ D +SN Sbjct: 191 CLLPDDLSN 199 >gi|46199364|ref|YP_005031.1| DNA helicase uvrD [Thermus thermophilus HB27] gi|46196989|gb|AAS81404.1| DNA helicase uvrD [Thermus thermophilus HB27] Length = 692 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A V A AGSGKT +V RV L+ PS +L +T T AA EM R+ ++ Sbjct: 23 PALVVAGAGSGKTRTVVHRVAYLVARRGVFPSEILAVTFTNKAAEEMRERLRGLVPG 79 >gi|326804259|ref|YP_004322077.1| ATP-dependent DNA helicase PcrA [Aerococcus urinae ACS-120-V-Col10a] gi|326650562|gb|AEA00745.1| ATP-dependent DNA helicase PcrA [Aerococcus urinae ACS-120-V-Col10a] Length = 818 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ LL A P +L +T T AA EM RV ++ Sbjct: 28 IMAGAGSGKTRVLTHRMAYLLEEKAVRPWNILAITFTNKAANEMKERVKNLV 79 >gi|302205690|gb|ADL10032.1| Putative UvrD-helicase [Corynebacterium pseudotuberculosis C231] gi|308275925|gb|ADO25824.1| Putative helicase [Corynebacterium pseudotuberculosis I19] Length = 1074 Score = 40.4 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 5/82 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSH 91 V A AG+GKT + RV+ L+ N A+P +L LT T+ AA ++S R+ LE + Sbjct: 34 VVAGAGAGKTETMAARVVWLVANNIANPDRILGLTFTRKAAQQLSQRIRGRLEQLAGMDA 93 Query: 92 LSDEILSAEIT-KIQGKKPNKS 112 L D S E++ K++ P S Sbjct: 94 LRDIDPSGELSYKLEAIAPTVS 115 >gi|300857961|ref|YP_003782944.1| hypothetical protein cpfrc_00543 [Corynebacterium pseudotuberculosis FRC41] gi|300685415|gb|ADK28337.1| hypothetical protein cpfrc_00543 [Corynebacterium pseudotuberculosis FRC41] Length = 1074 Score = 40.4 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 5/82 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSH 91 V A AG+GKT + RV+ L+ N A+P +L LT T+ AA ++S R+ LE + Sbjct: 34 VVAGAGAGKTETMAARVVWLVANNIANPDRILGLTFTRKAAQQLSQRIRGRLEQLAGMDA 93 Query: 92 LSDEILSAEIT-KIQGKKPNKS 112 L D S E++ K++ P S Sbjct: 94 LRDIDPSGELSYKLEAIAPTVS 115 >gi|19552005|ref|NP_600007.1| putative helicase [Corynebacterium glutamicum ATCC 13032] gi|62389668|ref|YP_225070.1| DNA helicase RECQ [Corynebacterium glutamicum ATCC 13032] gi|21323545|dbj|BAB98172.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum ATCC 13032] gi|41325003|emb|CAF19484.1| PUTATIVE DNA HELICASE RECQ [Corynebacterium glutamicum ATCC 13032] Length = 678 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 I+L + +++ AS P + A AG+GKT + R+ L+ P+ +L +T T Sbjct: 2 INLQDLDEDQRIAASAPRGPVCILAGAGTGKTRTITYRIAHLIDQGFVSPNRVLAVTFTS 61 Query: 73 AAAAEMSHRV 82 AA EM HR+ Sbjct: 62 RAAGEMRHRL 71 >gi|325838896|ref|ZP_08166702.1| ATP-dependent DNA helicase PcrA [Turicibacter sp. HGF1] gi|325490637|gb|EGC92948.1| ATP-dependent DNA helicase PcrA [Turicibacter sp. HGF1] Length = 741 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ P +L +T T AA EM RV ++I Sbjct: 25 VMAGAGSGKTRVLTHRIAYLMSEKLVAPYNILAITFTNKAAREMKERVEKLI 76 >gi|307245198|ref|ZP_07527289.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254145|ref|ZP_07535990.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306853842|gb|EFM86056.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862845|gb|EFM94794.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] Length = 1202 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEMSHRVLEIITA 88 +A + A+AG+GKT + LRLLL S +L +T TKAA E+ R+ I A Sbjct: 14 TALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNIKA 73 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARH----------LLITILETPGGL-KVQTIH 137 E AE K + +D H L + I E L + TIH Sbjct: 74 CRRFLQEY-DAE------KSYDANDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIH 126 Query: 138 AFCEAIMQQFPLEANI 153 +FC+ ++ QF ++ + Sbjct: 127 SFCQKMLFQFAFDSGM 142 >gi|301794254|emb|CBW36675.1| putative ATP-dependent exonuclease subunit A [Streptococcus pneumoniae INV104] Length = 1216 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ +D+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|253996605|ref|YP_003048669.1| UvrD/REP helicase [Methylotenera mobilis JLW8] gi|253983284|gb|ACT48142.1| UvrD/REP helicase [Methylotenera mobilis JLW8] Length = 672 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 14/105 (13%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85 V A AGSGKT ++ Q++ L+ A P + +T T AA EM RV ++ Sbjct: 22 VLAGAGSGKTRVITQKISYLINEAGYAPKEIAAITFTNKAALEMQERVGKLMQGTNIKGL 81 Query: 86 -ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILET 127 I + L ++L AE T + G KP S D S + +L +L T Sbjct: 82 TIATFHSLGLQMLRAEAT-LLGYKPQFSILDSSDSFKILADVLAT 125 >gi|255531341|ref|YP_003091713.1| UvrD/REP helicase [Pedobacter heparinus DSM 2366] gi|255344325|gb|ACU03651.1| UvrD/REP helicase [Pedobacter heparinus DSM 2366] Length = 769 Score = 40.4 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D ++ +Q A + T+ A + A AGSGKT ++ RV L+ +L LT T Sbjct: 1 MDYLAGLNPQQRAAVENTQGPAMIVAGAGSGKTRVITYRVAHLIEKGVDAFNILVLTFTN 60 Query: 73 AAAAEMSHRVLEII 86 A+ +M R++++I Sbjct: 61 KASKDMRERIMKVI 74 >gi|269955531|ref|YP_003325320.1| ATP-dependent DNA helicase PcrA [Xylanimonas cellulosilytica DSM 15894] gi|269304212|gb|ACZ29762.1| ATP-dependent DNA helicase PcrA [Xylanimonas cellulosilytica DSM 15894] Length = 896 Score = 40.4 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ LL A +L +T T AAAEM RV ++ Sbjct: 97 IVAGAGSGKTRVLTHRIAYLLATGRARAGEILAITFTNKAAAEMRERVEHLV 148 >gi|168486450|ref|ZP_02710958.1| recombination helicase AddA [Streptococcus pneumoniae CDC1087-00] gi|183570541|gb|EDT91069.1| recombination helicase AddA [Streptococcus pneumoniae CDC1087-00] Length = 1216 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ +D+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|145294942|ref|YP_001137763.1| hypothetical protein cgR_0888 [Corynebacterium glutamicum R] gi|140844862|dbj|BAF53861.1| hypothetical protein [Corynebacterium glutamicum R] Length = 678 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 I+L + +++ AS P + A AG+GKT + R+ L+ P+ +L +T T Sbjct: 2 INLQDLDEDQRIAASAPRGPVCILAGAGTGKTRTITYRIAHLIDQGFVSPNRVLAVTFTS 61 Query: 73 AAAAEMSHRV 82 AA EM HR+ Sbjct: 62 RAAGEMRHRL 71 >gi|134299275|ref|YP_001112771.1| UvrD-like DNA helicase, C terminal [Desulfotomaculum reducens MI-1] gi|251764523|sp|A4J4E3|ADDA_DESRM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|134051975|gb|ABO49946.1| DNA helicase/exodeoxyribonuclease V, subunit A [Desulfotomaculum reducens MI-1] Length = 1244 Score = 40.4 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 25/128 (19%) Query: 44 KTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100 KT +LV+R++ L+ P LL +T T AAAAEM R+ Sbjct: 31 KTAVLVERIIGLITDPHRPVDVDQLLIVTFTNAAAAEMRERI---------------GQA 75 Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA 160 ++K + P+ +++ +T+L + T+H+FC +++++ + ++ F +A Sbjct: 76 LSKALQENPHSKRLARQ----LTMLNRA---SITTLHSFCLDLLRRYFYQLDLDPGFRVA 128 Query: 161 DEEQSKKL 168 DE +++ L Sbjct: 129 DEVEAELL 136 >gi|315655665|ref|ZP_07908563.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii ATCC 51333] gi|315489729|gb|EFU79356.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii ATCC 51333] Length = 877 Score = 40.4 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L +R+ LL P +L +T T AAAEM RV ++ Sbjct: 82 VMAGAGSGKTRVLTRRIAWLLATERIRPWEVLAITFTNKAAAEMRQRVESLV 133 >gi|258620942|ref|ZP_05715976.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM573] gi|258586330|gb|EEW11045.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM573] Length = 1208 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 23/133 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + A D +L + + + +D S A LL+ + TIH F Sbjct: 85 LHDARLAFARGASEDPLLRSLLAEF-------TDHSLAVSLLLNAERQMDEAAIFTIHGF 137 Query: 140 CEAIMQQFPLEAN 152 C+ ++ Q E+ Sbjct: 138 CQRMLTQNAFESG 150 >gi|225858940|ref|YP_002740450.1| recombination helicase AddA [Streptococcus pneumoniae 70585] gi|225720195|gb|ACO16049.1| recombination helicase AddA [Streptococcus pneumoniae 70585] Length = 1216 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ +D+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|254458617|ref|ZP_05072042.1| ATP-dependent DNA helicase, RecQ family, putative [Campylobacterales bacterium GD 1] gi|207084925|gb|EDZ62212.1| ATP-dependent DNA helicase, RecQ family, putative [Campylobacterales bacterium GD 1] Length = 1596 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 ++++ + ++ + A GSGKT +LV ++ L+L N L LT+++ A E R Sbjct: 1045 KKVIDDNESQGMMILAGPGSGKTKVLVHKIASLILQENIKADQFLMLTYSRTAMLEFKSR 1104 Query: 82 VLEIITAWSH 91 + E+I ++ Sbjct: 1105 LFELIGQLAY 1114 >gi|325852036|ref|ZP_08171119.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A] gi|325484592|gb|EGC87508.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A] Length = 896 Score = 40.4 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A+ G GKTHIL +R+ +LCLT T AA EM++R+ +++ Sbjct: 27 VLASPGCGKTHILAERIRYARERGVKYEDMLCLTFTNRAAREMTNRIQKVV 77 >gi|269960508|ref|ZP_06174880.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834585|gb|EEZ88672.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 1212 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 23/133 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT + LRLLL + T +L +T T+AA AE+ R+ Sbjct: 23 IEASAGTGKTFTIAGLYLRLLLGHGTTDTKHHVPLTVDQILVVTFTEAATAELRDRIRAR 82 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 I A D ++ + +++ D +A +L+ V TIH F Sbjct: 83 IHDARIAFARGQSLDPVIQPLLEEVE-------DHKQAAEILLQAERQMDEAAVYTIHGF 135 Query: 140 CEAIMQQFPLEAN 152 C+ ++ Q E+ Sbjct: 136 CQRMLTQNAFESG 148 >gi|260776643|ref|ZP_05885538.1| exodeoxyribonuclease V beta chain [Vibrio coralliilyticus ATCC BAA-450] gi|260607866|gb|EEX34131.1| exodeoxyribonuclease V beta chain [Vibrio coralliilyticus ATCC BAA-450] Length = 1206 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 23/133 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-------HPST---LLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT + LRLLL + P T +L +T T+AA AE+ R+ Sbjct: 23 IEASAGTGKTFTIAGLYLRLLLGHGCAESKHQQPLTVDQILVVTFTEAATAELRDRIRAR 82 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + + D ++ + I D S+A +L+ V TIH F Sbjct: 83 IHDARLAFSRGQSGDPVIQPLLEAI-------DDHSQAAEILLQAERQMDEAAVYTIHGF 135 Query: 140 CEAIMQQFPLEAN 152 C+ ++ Q E+ Sbjct: 136 CQRMLTQNAFESG 148 >gi|227504218|ref|ZP_03934267.1| ATP-dependent DNA helicase [Corynebacterium striatum ATCC 6940] gi|227199173|gb|EEI79221.1| ATP-dependent DNA helicase [Corynebacterium striatum ATCC 6940] Length = 869 Score = 40.4 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 29/191 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI--------- 85 + A AGSGKT +L +R+ L+ P +L +T T AAAEM RV ++ Sbjct: 95 IVAGAGSGKTAVLTRRIAYLMRNRGVAPWEILAITFTNKAAAEMKERVGQLVGPVAERMW 154 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIHAFCEAI 143 ++ + + IL + G N + D AR LL I + +++ + Sbjct: 155 VSTFHSICVRILRQNAQLVPGLNTNFTIYDGDDARRLLTMIAKD---MQLDLKKYTARVL 211 Query: 144 MQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 Q N ++ +A+A+ E++K + T+A + + L+ A N Sbjct: 212 ANQISNHKNELVSPDYALAEAEKTKNPFD----ITVARVFDEYQRRLRAA--------NS 259 Query: 202 EDIETLISDII 212 D + LI +++ Sbjct: 260 VDFDDLIGEVV 270 >gi|222149095|ref|YP_002550052.1| DNA helicase II [Agrobacterium vitis S4] gi|221736080|gb|ACM37043.1| DNA helicase II [Agrobacterium vitis S4] Length = 858 Score = 40.4 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AG+GKT +L R+ +L A PS +L +T T AA EM RV Sbjct: 99 VLAGAGTGKTRVLTTRIAHILATGRAFPSQILSVTFTNKAAREMKERV 146 >gi|222111848|ref|YP_002554112.1| uvrd/rep helicase [Acidovorax ebreus TPSY] gi|221731292|gb|ACM34112.1| UvrD/REP helicase [Acidovorax ebreus TPSY] Length = 826 Score = 40.4 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L+ EQL A + P A + A AGSGKT +L R+ LL A P +L +T T Sbjct: 43 LLQNLNPEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQNGLATPGGILAVTFTNK 102 Query: 74 AAAEMSHRV 82 AA EM R+ Sbjct: 103 AAKEMLTRL 111 >gi|148985758|ref|ZP_01818886.1| exonuclease RexA [Streptococcus pneumoniae SP3-BS71] gi|147922062|gb|EDK73185.1| exonuclease RexA [Streptococcus pneumoniae SP3-BS71] gi|301800092|emb|CBW32693.1| putative ATP-dependent exonuclease subunit A [Streptococcus pneumoniae OXC141] Length = 1216 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ +D+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|121610666|ref|YP_998473.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2] gi|121555306|gb|ABM59455.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2] Length = 1142 Score = 40.4 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 9/66 (13%) Query: 26 LASDPTRSA---------WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 L DPT++ + A G+GKT LV+R+ LL P+T+L LT + AA Sbjct: 199 LTPDPTQAQAAAHRGLAFQLQAGPGTGKTRTLVRRIEGLLADGVDPTTILVLTFSNKAAN 258 Query: 77 EMSHRV 82 E+ R+ Sbjct: 259 ELCERI 264 >gi|293376176|ref|ZP_06622421.1| ATP-dependent DNA helicase PcrA [Turicibacter sanguinis PC909] gi|292645163|gb|EFF63228.1| ATP-dependent DNA helicase PcrA [Turicibacter sanguinis PC909] Length = 741 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ P +L +T T AA EM RV ++I Sbjct: 25 VMAGAGSGKTRVLTHRIAYLMSEKLVAPYNILAITFTNKAAREMKERVEKLI 76 >gi|146417360|ref|XP_001484649.1| hypothetical protein PGUG_02378 [Meyerozyma guilliermondii ATCC 6260] Length = 830 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 37/138 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A G+GKT +LV RV LLL + P ++ T TK AA EM R+ ++ Sbjct: 30 VIAGPGTGKTKVLVSRVAHLLLHDQIPPQQIIVTTFTKKAANEMVLRLRLVL-------- 81 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +D+ R L V T H+ C I++++ + Sbjct: 82 ---------------QDTDIDVNR------------LMVGTFHSICYRIIKKYGHLIGLE 114 Query: 155 SHFAIADEEQSKKLIEEA 172 F IADE+ S L+EE Sbjct: 115 G-FTIADEKDSIHLLEEC 131 >gi|190149661|ref|YP_001968186.1| exodeoxyribonuclease V subunit beta [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307260844|ref|ZP_07542530.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262969|ref|ZP_07544591.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914792|gb|ACE61044.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306869411|gb|EFN01202.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871595|gb|EFN03317.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 1202 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEMSHRVLEIITA 88 +A + A+AG+GKT + LRLLL S +L +T TKAA E+ R+ I A Sbjct: 14 TALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNIKA 73 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARH----------LLITILETPGGL-KVQTIH 137 E AE K + +D H L + I E L + TIH Sbjct: 74 CRRFLQEY-DAE------KSYDANDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIH 126 Query: 138 AFCEAIMQQFPLEANI 153 +FC+ ++ QF ++ + Sbjct: 127 SFCQKMLFQFAFDSGM 142 >gi|312863341|ref|ZP_07723579.1| ATP-dependent nuclease subunit A [Streptococcus vestibularis F0396] gi|311100877|gb|EFQ59082.1| ATP-dependent nuclease subunit A [Streptococcus vestibularis F0396] Length = 1217 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 19/124 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L ++ L T T AA E+ R+ ++ Sbjct: 45 VSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELKERL-----------EK 93 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 L+ ++ +++ + R L + G + T+ AF + ++ Q+ ++ Sbjct: 94 RLTEQLGQVE--------TDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSP 145 Query: 156 HFAI 159 F I Sbjct: 146 IFRI 149 >gi|294668891|ref|ZP_06733981.1| exodeoxyribonuclease V, beta subunit [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309188|gb|EFE50431.1| exodeoxyribonuclease V, beta subunit [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 1189 Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 33/169 (19%) Query: 22 SEQLLASDPTR-----SAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA 75 S +L DP +A + A+AG+GKT+ + RL+L P +L +T TKAA Sbjct: 2 SRSILPFDPLTVPVQGTALIEASAGTGKTYGIAALFARLILLEKLPVDKVLVVTFTKAAT 61 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL--ITILETPGGLKV 133 AE+ R+ L +I+G K ++ R LL ETP L++ Sbjct: 62 AELKTRL-----------RGRLDEAFRRIRGDKMDEEADGFMRGLLEQAARQETPERLEL 110 Query: 134 Q--------------TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 + TIH FC+ ++ + + + AD+ ++L Sbjct: 111 RLKAALSQFDNAAIYTIHGFCQRLLGDYAFLCQVPFETSSADDNDKREL 159 >gi|261884575|ref|ZP_06008614.1| putative recombination protein RecB [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 135 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 23/137 (16%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 +R + A+A SG T L R + L+L + +L LT TK AA EM R II A+ Sbjct: 4 SRYLALEASAASGITFALSVRFIALILQGNDIAEILALTFTKKAANEMKSR---IIDAFC 60 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHL----LITILETPGG------LKVQTIHAFC 140 +L + KK +++ K L ++++ + G LK+ T +F Sbjct: 61 NLHE----------SSKKNELNELEKILELSAVDILSLRDKYMGNFLKNELKISTFDSFF 110 Query: 141 EAIMQQFPLEANITSHF 157 I++QF L I F Sbjct: 111 TMILRQFSLNLGIMPDF 127 >gi|226310272|ref|YP_002770166.1| ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599] gi|226093220|dbj|BAH41662.1| ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599] Length = 782 Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT +L QR+ L+ A P ++L +T T AA EM +RV Sbjct: 28 ILAGAGSGKTKVLTQRIAYLISAKQVAPWSILAITFTNKAAREMQNRV 75 >gi|283798327|ref|ZP_06347480.1| ATP-dependent DNA helicase PcrA [Clostridium sp. M62/1] gi|291073910|gb|EFE11274.1| ATP-dependent DNA helicase PcrA [Clostridium sp. M62/1] Length = 618 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHR 81 V A GSGKT ++ RV L+ + +PS++L +T T+AAA EM R Sbjct: 20 VLAGPGSGKTTVVTHRVQSLIERHGVNPSSILVITFTRAAAREMKER 66 >gi|171779650|ref|ZP_02920606.1| hypothetical protein STRINF_01487 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281752|gb|EDT47186.1| hypothetical protein STRINF_01487 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 1208 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 22/148 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R++ +L L T T AA E+ R+ + I+ Sbjct: 45 VSASAGSGKTFVMVERIIDKILRGITVDRLFISTFTVKAAGELKERLEKKISQAL----- 99 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +K +D+ + + L+T + T+ AF + ++ Q+ I+ Sbjct: 100 -----------QKATDNDLKTYLNEQLLALQTA---DIGTMDAFTQKLVNQYGYTLGISP 145 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLD 183 F I ++ + L+ K A + D Sbjct: 146 TFRIMTDKSEQDLV---KNDVFADLFAD 170 >gi|330429421|gb|AEC20755.1| DNA helicase [Pusillimonas sp. T7-7] Length = 639 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86 A GSGKT +L R+ RLL+ + +L LT T AA EM R+++I+ Sbjct: 34 AGPGSGKTRVLTARIARLLVESLDDRWRILALTFTNRAADEMRSRIIDIV 83 >gi|327312374|ref|YP_004327811.1| UvrD/REP helicase [Prevotella denticola F0289] gi|326945342|gb|AEA21227.1| UvrD/REP helicase [Prevotella denticola F0289] Length = 896 Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A+ G GKTHIL +R+ +LCLT T AA EM++R+ +++ Sbjct: 27 VLASPGCGKTHILAERIRYARERGVKYEDMLCLTFTNRAAREMTNRIQKVV 77 >gi|307693333|ref|ZP_07635570.1| UvrD/REP family ATP-dependent DNA helicase [Ruminococcaceae bacterium D16] Length = 699 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 27/44 (61%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 A GSGKT +LV R+ L+ P +L +T+T +AA +MS R Sbjct: 33 AVPGSGKTTVLVSRIGYLIAQGVSPENILTMTYTVSAARDMSRR 76 >gi|295116233|emb|CBL37080.1| Superfamily I DNA and RNA helicases [butyrate-producing bacterium SM4/1] Length = 618 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHR 81 V A GSGKT ++ RV L+ + +PS++L +T T+AAA EM R Sbjct: 20 VLAGPGSGKTTVVTHRVQSLIERHGVNPSSILVITFTRAAAREMKER 66 >gi|121595626|ref|YP_987522.1| ATP-dependent DNA helicase UvrD [Acidovorax sp. JS42] gi|120607706|gb|ABM43446.1| ATP-dependent DNA helicase UvrD [Acidovorax sp. JS42] Length = 816 Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L+ EQL A + P A + A AGSGKT +L R+ LL A P +L +T T Sbjct: 33 LLQNLNPEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQNGLATPGGILAVTFTNK 92 Query: 74 AAAEMSHRV 82 AA EM R+ Sbjct: 93 AAKEMLTRL 101 >gi|189425128|ref|YP_001952305.1| UvrD/REP helicase [Geobacter lovleyi SZ] gi|189421387|gb|ACD95785.1| UvrD/REP helicase [Geobacter lovleyi SZ] Length = 665 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%) Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAA 74 +SQ EQ +A T V A AGSGKT ++ R++ LL P+ +L +T T A Sbjct: 1 MSQLNPEQFIAVHHTEGPLLVLAGAGSGKTQVITSRIVHLLGTLKVPADQILAVTFTNKA 60 Query: 75 AAEMSHRV 82 A EM RV Sbjct: 61 AKEMQERV 68 >gi|304413632|ref|ZP_07395076.1| DNA-dependent ATPase I and helicase II [Candidatus Regiella insecticola LSR1] gi|304283723|gb|EFL92117.1| DNA-dependent ATPase I and helicase II [Candidatus Regiella insecticola LSR1] Length = 715 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 40/141 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGK+ +LV R+ LL + P +++ +T T +AAEM HR+ + Sbjct: 25 VLAGAGSGKSRVLVHRIAWLLSQEDISPFSIIAVTFTNKSAAEMRHRIENL--------- 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G+ N G+ V T H +++ L AN+ Sbjct: 76 -----------GRAHN-------------------GMWVGTFHGLAHRLLRIHHLAANLP 105 Query: 155 SHFAIADEEQSKKLIEEAKKS 175 F + D + + ++ KS Sbjct: 106 QDFQVLDSDDQLRFVKRIIKS 126 >gi|294786844|ref|ZP_06752098.1| ATP-dependent helicase PcrA [Parascardovia denticolens F0305] gi|315226480|ref|ZP_07868268.1| ATP-dependent DNA helicase PcrA [Parascardovia denticolens DSM 10105] gi|294485677|gb|EFG33311.1| ATP-dependent helicase PcrA [Parascardovia denticolens F0305] gi|315120612|gb|EFT83744.1| ATP-dependent DNA helicase PcrA [Parascardovia denticolens DSM 10105] Length = 901 Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ L +A+PS +L +T T AA EM R+ +I Sbjct: 71 IGAGAGSGKTRVLTRRIAWALSQWHAYPSQILAITFTNKAAREMKERLGSLI 122 >gi|258652355|ref|YP_003201511.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233] gi|258555580|gb|ACV78522.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233] Length = 1106 Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 + + L + T + + P V A AGSGKT + RV+ L+ P +L LT Sbjct: 8 ARELGLPAPTAEQAAVIEAPLEPGLVVAGAGSGKTETMAARVVYLIATGQVRPEQVLGLT 67 Query: 70 HTKAAAAEMSHRV 82 T+ AAA ++ R+ Sbjct: 68 FTRKAAAALAQRI 80 >gi|115372354|ref|ZP_01459663.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1] gi|115370567|gb|EAU69493.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1] Length = 774 Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 V + AGSGKT ++ +RV L+ + P +L +T T AA EM R+++++ A +H Sbjct: 29 VLSGAGSGKTRVITRRVAHLVKVRRVFPWRILAVTFTNKAAREMRERLVQLLGAQAH 85 >gi|93569010|gb|ABF13475.1| helicase [Arcanobacterium pyogenes] Length = 868 Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ + + PS +L +T T AA EM R+ +I Sbjct: 85 VVAGAGSGKTRVLTTRIYHLISSGSVRPSEILAITFTNKAAKEMRERLESMI 136 >gi|116490506|ref|YP_810050.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni PSU-1] gi|290889906|ref|ZP_06552993.1| hypothetical protein AWRIB429_0383 [Oenococcus oeni AWRIB429] gi|116091231|gb|ABJ56385.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni PSU-1] gi|290480516|gb|EFD89153.1| hypothetical protein AWRIB429_0383 [Oenococcus oeni AWRIB429] Length = 748 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 11/80 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85 + A AGSGKT +L RV L+ + P ++L +T T AA EM R+ + Sbjct: 25 IMAGAGSGKTRVLTHRVAYLVKEKHVDPWSILAITFTNKAAREMKERIAGLVDEEDARSI 84 Query: 86 -ITAWSHLSDEILSAEITKI 104 ++ + LS IL ++ KI Sbjct: 85 WVSTFHALSARILRRDVDKI 104 >gi|326771896|ref|ZP_08231181.1| UvrD/REP helicase [Actinomyces viscosus C505] gi|326638029|gb|EGE38930.1| UvrD/REP helicase [Actinomyces viscosus C505] Length = 1142 Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLL 66 Q +E + + + T+ + + + V A AGSGKT + QRV+ L+ P +L Sbjct: 12 QALAEALGIHTPTQEQARVIAHRLSPLLVVAGAGSGKTATMAQRVVYLVATGQVRPDQIL 71 Query: 67 CLTHTKAAAAEMSHRV 82 LT T+ A AE+ RV Sbjct: 72 GLTFTRKATAELDQRV 87 >gi|227498671|ref|ZP_03928815.1| ATP-dependent DNA helicase pcrA [Acidaminococcus sp. D21] gi|226904127|gb|EEH90045.1| ATP-dependent DNA helicase pcrA [Acidaminococcus sp. D21] Length = 750 Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 15 DLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 DL+S ++Q A + A AGSGKT L R+ LL P ++L +T T Sbjct: 3 DLLSSLNTQQAEAVKHVAGPILILAGAGSGKTKALTTRIAYLLEKGVPPYSILAITFTNK 62 Query: 74 AAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 63 AAKEMRERVDKLV 75 >gi|254369409|ref|ZP_04985421.1| UvrD/REP superfamily I DNA and RNA helicases [Francisella tularensis subsp. holarctica FSC022] gi|157122359|gb|EDO66499.1| UvrD/REP superfamily I DNA and RNA helicases [Francisella tularensis subsp. holarctica FSC022] Length = 671 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 38/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++++++ L+ +P+ ++L +T T AA EM RV Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV------------ 69 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 KS + K E GL + T H+F +I+++ E Sbjct: 70 ----------------KSRLDK---------EKSKGLMISTFHSFGLSILKKHFNELGYK 104 Query: 155 SHFAIADEEQSKKLI 169 +F + D S LI Sbjct: 105 KNFTLFDSHDSLALI 119 >gi|15602381|ref|NP_245453.1| hypothetical protein PM0516 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720777|gb|AAK02600.1| RecB [Pasteurella multocida subsp. multocida str. Pm70] Length = 1230 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 28/160 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLL-----ANAHPST---LLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT+ + LRLLL + + P T +L +T T+AA E+ R+ E I Sbjct: 20 IEASAGTGKTYTIGSLYLRLLLQAGENSFSQPLTVEQILVVTFTEAATEELKGRIRERI- 78 Query: 88 AWSHLSDEILSAEITKIQGKKPNK------------SDMSKARHLLITILETPGGLKVQT 135 H + + L A + QG++ + SD+ A L +T + T Sbjct: 79 ---HQAKKALIA--YQEQGEQALQDDPFLLACLASISDLDLAIQRLTIAEQTMDLAAIYT 133 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 IH FC ++ Q+ + + HF + + L+E K+ Sbjct: 134 IHGFCRRMLMQYAFHSRV--HFNLTLNKDETALLERLFKA 171 >gi|317491508|ref|ZP_07949944.1| UvrD/REP helicase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921055|gb|EFV42378.1| UvrD/REP helicase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 684 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LLL A P +L L + AA EM+ R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLLRKEATPEQILLLAFGRKAAEEMNDRIQE 263 >gi|153836760|ref|ZP_01989427.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus AQ3810] gi|149749906|gb|EDM60651.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus AQ3810] Length = 1227 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 23/133 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT + LRLLL + T +L +T T+AA AE+ R+ Sbjct: 38 IEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRAR 97 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 I A D ++ + + D +A +L+ V TIH F Sbjct: 98 IHDARIAFARGQSYDPVIQPLLNEF-------DDHKQAAEILLQAERQMDEAAVYTIHGF 150 Query: 140 CEAIMQQFPLEAN 152 C+ ++ Q E+ Sbjct: 151 CQRMLTQNAFESG 163 >gi|56476966|ref|YP_158555.1| ATP-dependent exoDNAse beta subunit [Aromatoleum aromaticum EbN1] gi|56313009|emb|CAI07654.1| ATP-dependent exoDNAse beta subunit [Aromatoleum aromaticum EbN1] Length = 1229 Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 13/147 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA-WSHLS 93 + A+AG+GKT + LRLL+ +L +T T+AA AE+ RV E I ++L Sbjct: 27 IEASAGTGKTWNICGLFLRLLVERELAVDAILVVTFTRAATAELKSRVRERIAGTLAYLD 86 Query: 94 ------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 D ++ + ++ + ++ + R L L+T + TIH +C+ + Sbjct: 87 GTAADGDPFVAQLVAALESQAIARAQI---RERLDLALQTFDEAAIFTIHGYCQRALADT 143 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKK 174 P A + FA+ E +L EA + Sbjct: 144 PFAAALP--FALELTEDDLELRLEAAR 168 >gi|326204932|ref|ZP_08194785.1| UvrD/REP helicase [Clostridium papyrosolvens DSM 2782] gi|325984981|gb|EGD45824.1| UvrD/REP helicase [Clostridium papyrosolvens DSM 2782] Length = 1049 Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 28/149 (18%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRV 82 +D ++ V A AG+GKT+ +V R+ L P ++ +T T AA M R+ Sbjct: 340 ADSEKNTLVKAGAGTGKTYSMVSRIAYLCNNKNKPVISLADSIAMVTFTNEAANNMKRRL 399 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 ++ + +L+ K P I +E ++V TIH F + Sbjct: 400 KQLFINYFNLT-------------KNPK----------YIKFIEEVEQMQVSTIHKFAKK 436 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEE 171 I+Q E + F++ + S++ I E Sbjct: 437 IIQTAGFELGLGKSFSVTSSDFSREKIYE 465 >gi|118587527|ref|ZP_01544951.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni ATCC BAA-1163] gi|118431978|gb|EAV38720.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni ATCC BAA-1163] Length = 748 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 11/80 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85 + A AGSGKT +L RV L+ + P ++L +T T AA EM R+ + Sbjct: 25 IMAGAGSGKTRVLTHRVAYLVKEKHVDPWSILAITFTNKAAREMKERIAGLVDEEDARSI 84 Query: 86 -ITAWSHLSDEILSAEITKI 104 ++ + LS IL ++ KI Sbjct: 85 WVSTFHALSARILRRDVDKI 104 >gi|49475840|ref|YP_033881.1| DNA helicase II [Bartonella henselae str. Houston-1] gi|49238648|emb|CAF27892.1| DNA helicase II [Bartonella henselae str. Houston-1] Length = 778 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L + A P +L +T T AA EM R+ E+I Sbjct: 64 VLAGAGTGKTRVLTTRISHILHSGLASPQQILAVTFTNKAAREMKMRIGELI 115 >gi|219856415|ref|YP_002473537.1| hypothetical protein CKR_3072 [Clostridium kluyveri NBRC 12016] gi|219570139|dbj|BAH08123.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 754 Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ ++ N +PS +L +T T AA EM R+ +++ D Sbjct: 33 ILAGAGSGKTRVLTYRIAHMIKDLNIYPSKILAITFTNKAAGEMKDRIRKLV------GD 86 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E+ S + V T H+ C I+++ + Sbjct: 87 EVDS--------------------------------MWVSTFHSSCVRILRREIDKLGYN 114 Query: 155 SHFAIADEEQSKKLIEEAKK 174 +FAI D K LI++ K Sbjct: 115 RNFAIYDSYDQKVLIKQCMK 134 >gi|254388945|ref|ZP_05004176.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] gi|197702663|gb|EDY48475.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] Length = 1162 Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 45/193 (23%), Positives = 76/193 (39%), Gaps = 41/193 (21%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT ++ RV+ L+ P +L LT T AA E++ RV + Sbjct: 2 AGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAAGELAERV----------RTAL 51 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 + A +T P++ PG ++ T HAF ++ L + Sbjct: 52 VRAGVTDPDAIDPDRP---------------PGEPRISTYHAFAGQLLTDHGLRIGLEPT 96 Query: 157 FAIADEEQSKKLIEEAKK-------------STLASIMLDNNEELKKAFY--EILEISND 201 + + +L + + STL +L + EL + E+L ++ Sbjct: 97 ARLLADATRYQLAAQVLRAAPGPYPALTRSFSTLVGDLLALDAELSEHLVRPELLAAHDE 156 Query: 202 EDIETLISDIISN 214 E +ETL S ++N Sbjct: 157 ELLETLASASLTN 169 >gi|149177805|ref|ZP_01856404.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797] gi|148843295|gb|EDL57659.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797] Length = 657 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AG+GKT ++ R++ L+ P +L +T T AA EM R+ Sbjct: 33 VLAGAGTGKTRVITYRMVELIRTGVAPDKILSVTFTNKAAKEMQERM 79 >gi|153956081|ref|YP_001396846.1| PcrA [Clostridium kluyveri DSM 555] gi|146348939|gb|EDK35475.1| PcrA [Clostridium kluyveri DSM 555] Length = 745 Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ ++ N +PS +L +T T AA EM R+ +++ D Sbjct: 24 ILAGAGSGKTRVLTYRIAHMIKDLNIYPSKILAITFTNKAAGEMKDRIRKLV------GD 77 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E+ S + V T H+ C I+++ + Sbjct: 78 EVDS--------------------------------MWVSTFHSSCVRILRREIDKLGYN 105 Query: 155 SHFAIADEEQSKKLIEEAKK 174 +FAI D K LI++ K Sbjct: 106 RNFAIYDSYDQKVLIKQCMK 125 >gi|255262002|ref|ZP_05341344.1| hypothetical protein TR2A62_3590 [Thalassiobium sp. R2A62] gi|255104337|gb|EET47011.1| hypothetical protein TR2A62_3590 [Thalassiobium sp. R2A62] Length = 789 Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V+A GSGKTH +RV+ L+ P+ + +T T+ AA E+ R+ Sbjct: 237 VTAGPGSGKTHTATERVINLVQQGLSPARIRLITFTRVAAEEVGRRI 283 >gi|298345243|ref|YP_003717930.1| ATP-dependent DNA helicase [Mobiluncus curtisii ATCC 43063] gi|298235304|gb|ADI66436.1| ATP-dependent DNA helicase [Mobiluncus curtisii ATCC 43063] Length = 877 Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L +R+ LL P +L +T T AAAEM RV ++ Sbjct: 82 VMAGAGSGKTRVLTRRIAWLLATERIRPWEVLAITFTNKAAAEMRQRVESLV 133 >gi|197124367|ref|YP_002136318.1| UvrD/REP helicase [Anaeromyxobacter sp. K] gi|196174216|gb|ACG75189.1| UvrD/REP helicase [Anaeromyxobacter sp. K] Length = 1111 Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 25/148 (16%) Query: 38 ANAGSGKTHILVQRVL-RLLLANAHPSTLL----CLTHTKAAAAEMSHRVLEIITAWSHL 92 A AG+GKT +LV R++ R+ + P+ L +T T+ AA E+ R+ E L Sbjct: 28 AGAGTGKTTLLVARLVERVAPEDDGPALPLGRIAAVTFTRKAAGELRLRIREA------L 81 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + A++T ++ R L L V TIH+F + +++ P+EA Sbjct: 82 LRALARADLTDLR------------RRRLADALSALDTAHVGTIHSFADRLLRLRPVEAR 129 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASI 180 ++ + I +++ L++EA + L ++ Sbjct: 130 LSPSYDIVEDDAP--LVDEAFAAFLHAV 155 >gi|295092248|emb|CBK78355.1| Superfamily I DNA and RNA helicases [Clostridium cf. saccharolyticum K10] Length = 830 Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ +P ++ +T T AAAEM RV +I+ Sbjct: 25 VLAGAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTNKAAAEMRERVDQIV 76 >gi|307730045|ref|YP_003907269.1| exodeoxyribonuclease V subunit beta [Burkholderia sp. CCGE1003] gi|307584580|gb|ADN57978.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. CCGE1003] Length = 1232 Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 7/118 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSH 91 + A+AG+GKT + +RLLL N + +L +T TKAA AE+ R+ L + Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRGRLAELHRAIE 86 Query: 92 LSDEILSAEITKI--QGKKPNKS-DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + D+ I ++ P + D A ++ L T + TIHAFC+ +Q+ Sbjct: 87 MDDDGGDPFIRRLFETTLAPERGVDREAAAKVVRRALRTFDQAAIHTIHAFCQRALQE 144 >gi|229097023|ref|ZP_04227991.1| UvrD/REP helicase [Bacillus cereus Rock3-29] gi|228686419|gb|EEL40329.1| UvrD/REP helicase [Bacillus cereus Rock3-29] Length = 825 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 4/102 (3%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII-TAWSHLS 93 V A AG+GKT +++ R+L LL+ PS ++ +T T+ AA M ++ ++ T + S Sbjct: 96 VKAGAGTGKTTVMIDRILYLLIKEEVKPSEIVMITFTRDAAQNMHTKLRNLLFTRFKATS 155 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQ 134 + + I K+ + D S A+ LL + G GL VQ Sbjct: 156 SVVFLSLIEKLNDIRIQTID-SFAKDLLKELGSLRGFGLNVQ 196 >gi|254476738|ref|ZP_05090124.1| UvrD/REP helicase domain protein [Ruegeria sp. R11] gi|214030981|gb|EEB71816.1| UvrD/REP helicase domain protein [Ruegeria sp. R11] Length = 786 Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ LL+ +A P+ +L +T T AA EM RV Sbjct: 50 AGAGTGKTKALTARIVHLLMTGSAKPNEILAVTFTNKAAREMKDRV 95 >gi|254462521|ref|ZP_05075937.1| UvrD/REP helicase domain protein [Rhodobacterales bacterium HTCC2083] gi|206679110|gb|EDZ43597.1| UvrD/REP helicase domain protein [Rhodobacteraceae bacterium HTCC2083] Length = 817 Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ L+ A A P+ +L +T T AA EM +RV Sbjct: 52 AGAGTGKTKALTARIVHLMNAAKARPNEILAVTFTNKAAREMKNRV 97 >gi|172060153|ref|YP_001807805.1| exodeoxyribonuclease V subunit beta [Burkholderia ambifaria MC40-6] gi|171992670|gb|ACB63589.1| exodeoxyribonuclease V, beta subunit [Burkholderia ambifaria MC40-6] Length = 1234 Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 26 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 85 Query: 95 ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + A + + D A + L + TIHAFC+ +Q+ Sbjct: 86 TGDDGGDPFVARLLETTLGDAGTLDPETAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143 >gi|15826976|ref|NP_301239.1| putative ATP-dependent DNA helicase [Mycobacterium leprae TN] gi|221229454|ref|YP_002502870.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923] gi|13632801|sp|Q9CD72|PCRA_MYCLE RecName: Full=ATP-dependent DNA helicase pcrA gi|13092523|emb|CAC29661.1| putative ATP-dependent DNA helicase [Mycobacterium leprae] gi|219932561|emb|CAR70246.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923] Length = 778 Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 39/137 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ L+ A + S +L +T T AAAEM RV ++ Sbjct: 38 IVAGAGSGKTTVLARRIAYLIAARSVGVSQILAITFTNKAAAEMRERVARLVGD------ 91 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 T + V T H+ C I++ Q L + Sbjct: 92 -------------------------------HTGPSMWVSTFHSTCVRILRNQASLIGGL 120 Query: 154 TSHFAIADEEQSKKLIE 170 S+F+I D + S+ L++ Sbjct: 121 NSNFSIYDVDDSRSLLQ 137 >gi|134295236|ref|YP_001118971.1| exodeoxyribonuclease V subunit beta [Burkholderia vietnamiensis G4] gi|134138393|gb|ABO54136.1| exodeoxyribonuclease V, beta subunit [Burkholderia vietnamiensis G4] Length = 1234 Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 7/118 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 26 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 85 Query: 95 ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + A + + + D A + L + TIHAFC+ +Q+ Sbjct: 86 TGDDGGDPFVARLLETTLGEGGALDPDTAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143 >gi|315649755|ref|ZP_07902838.1| ATP-dependent DNA helicase PcrA [Paenibacillus vortex V453] gi|315274729|gb|EFU38110.1| ATP-dependent DNA helicase PcrA [Paenibacillus vortex V453] Length = 776 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ A P ++L +T T AA EM RV +++ Sbjct: 30 IMAGAGSGKTRVLTHRIGYLIATRKAAPWSILAITFTNKAAREMQERVSKLV 81 >gi|307298415|ref|ZP_07578218.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915580|gb|EFN45964.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2] Length = 969 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 60/138 (43%), Gaps = 35/138 (25%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLL--------LANAHPSTLLCLTHTKAAAAEMSHRV 82 + +V+A+AG+GKT LV+ + + + H ++ +T T AA EM RV Sbjct: 2 NKDIFVTASAGTGKTFSLVKEYVGVFDRSFRIGERLDVH--NVVAITFTNKAAREMKDRV 59 Query: 83 LEIITAWSHLSDEILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 IT H I S G KP ++ MS A + TIH+FCE Sbjct: 60 ---ITEIDH---RIASGH----PGSWKPLRNKMSYAW--------------ISTIHSFCE 95 Query: 142 AIMQQFPLEANITSHFAI 159 I+++ L A I F I Sbjct: 96 RILRESALFAGIDPGFQI 113 >gi|260900330|ref|ZP_05908725.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus AQ4037] gi|308108575|gb|EFO46115.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus AQ4037] Length = 1227 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 23/133 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT + LRLLL + T +L +T T+AA AE+ R+ Sbjct: 38 IEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRAR 97 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 I A D ++ + + D +A +L+ V TIH F Sbjct: 98 IHDARIAFARGQSYDPVIQPLLNEF-------DDHKQAAEILLQAERQMDEAAVYTIHGF 150 Query: 140 CEAIMQQFPLEAN 152 C+ ++ Q E+ Sbjct: 151 CQRMLTQNAFESG 163 >gi|258507444|ref|YP_003170195.1| UvrD/REP helicase [Lactobacillus rhamnosus GG] gi|257147371|emb|CAR86344.1| UvrD/REP helicase [Lactobacillus rhamnosus GG] gi|259648798|dbj|BAI40960.1| hypothetical protein [Lactobacillus rhamnosus GG] Length = 595 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 V A GSGKT +L +VLRLL N + C+THT A E+ R+ Sbjct: 32 VVAGPGSGKTTVLAAKVLRLLTTRNYEDKGICCITHTNVAVKEILARL 79 >gi|294790788|ref|ZP_06755946.1| ATP-dependent DNA helicase PcrA [Scardovia inopinata F0304] gi|294458685|gb|EFG27038.1| ATP-dependent DNA helicase PcrA [Scardovia inopinata F0304] Length = 885 Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 3/71 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 ++Q ++E + P + + A AGSGKT +L +R+ L A+PS +L +T T AA Sbjct: 41 LNQQQAEAVRYQGP--ALLIGAGAGSGKTRVLTRRIAWALSQWGAYPSQILAITFTNKAA 98 Query: 76 AEMSHRVLEII 86 EM R+ ++ Sbjct: 99 REMKERLATLV 109 >gi|295688867|ref|YP_003592560.1| UvrD/REP helicase [Caulobacter segnis ATCC 21756] gi|295430770|gb|ADG09942.1| UvrD/REP helicase [Caulobacter segnis ATCC 21756] Length = 806 Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A P LL +T T AA EM R+ II Sbjct: 60 VLAGAGTGKTRVLTTRLAHILATGRARPWELLAVTFTNKAAREMRERITHII 111 >gi|315653960|ref|ZP_07906876.1| UvrD/REP helicase subfamily [Lactobacillus iners ATCC 55195] gi|315488656|gb|EFU78302.1| UvrD/REP helicase subfamily [Lactobacillus iners ATCC 55195] Length = 642 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Query: 36 VSANAGSGKTHILVQRVLRL-----LLANAHPSTLLCLTHTKAAAAEMSHRV 82 + A G+GKTH +V+ + + L+ N+ +LC+T+T A E+++R+ Sbjct: 22 IYAGPGAGKTHFIVENIKNIISTNKLITNSENRKILCITYTNKAVDEIANRL 73 >gi|306829519|ref|ZP_07462709.1| ATP-dependent nuclease subunit A [Streptococcus mitis ATCC 6249] gi|304428605|gb|EFM31695.1| ATP-dependent nuclease subunit A [Streptococcus mitis ATCC 6249] Length = 1217 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I +D+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKIGQQIQETDD 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|118399025|ref|XP_001031839.1| UvrD/REP helicase family protein [Tetrahymena thermophila] gi|89286173|gb|EAR84176.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210] Length = 1961 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 ++ SD + + A AGSGKT LV R+ LL P+ ++ T A +S +V E Sbjct: 701 VIVSDIKKDTKIIACAGSGKTTTLVIRLKYLLDHGVKPNQIIISTFNIEAGKHISQKVYE 760 Query: 85 IITAWSHLSDEILSAEITKI 104 +I S IL I KI Sbjct: 761 MIGKEVQQS--ILIGNIDKI 778 >gi|76811844|ref|YP_332924.1| exodeoxyribonuclease V subunit beta [Burkholderia pseudomallei 1710b] gi|76581297|gb|ABA50772.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 1710b] Length = 1934 Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 691 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 750 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P ++ + R L + + TIHAFC+ Sbjct: 751 TGDGGGDPFIARLFETTLAPGRGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 805 Query: 144 MQQ 146 +Q+ Sbjct: 806 LQE 808 >gi|291536958|emb|CBL10070.1| Superfamily I DNA and RNA helicases [Roseburia intestinalis M50/1] Length = 689 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 9/77 (11%) Query: 14 IDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA------NAHPSTL 65 IDL+++ KS L SD S ++ AGSGKT+ L+Q L+ +++ H + Sbjct: 9 IDLMNEKKSLNKLFECSDSFTSVVFNSGAGSGKTYALIQ-CLKYIISIHHDDLKNHNQKI 67 Query: 66 LCLTHTKAAAAEMSHRV 82 C+T+T AA + H++ Sbjct: 68 GCITYTNVAAEHIKHQL 84 >gi|254432144|ref|ZP_05045847.1| ATP-dependent DNA helicase PcrA [Cyanobium sp. PCC 7001] gi|197626597|gb|EDY39156.1| ATP-dependent DNA helicase PcrA [Cyanobium sp. PCC 7001] Length = 800 Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 20/145 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+ + A P+ LL +T T AA EM R LE+ Sbjct: 25 VVAGAGSGKTRALTHRIAHLIGHHGADPAELLAVTFTNKAAREMKER-LEL--------- 74 Query: 95 EILSAEITKIQGKKP-NKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQ------Q 146 +L+ ++ + Q +P + + + R L I E L + T HA +++ + Sbjct: 75 -LLAQKLAQSQFGQPWSTLPLLEQRQLRSRIYREVIKDLWIGTFHALFARLLRFDIDKFR 133 Query: 147 FPLEANITSHFAIADEEQSKKLIEE 171 P + T F+I DE + LI+E Sbjct: 134 DPEGLSWTRQFSIYDEGDVQSLIKE 158 >gi|312874821|ref|ZP_07734840.1| UvrD/REP helicase [Lactobacillus iners LEAF 2053A-b] gi|311089566|gb|EFQ47991.1| UvrD/REP helicase [Lactobacillus iners LEAF 2053A-b] Length = 642 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Query: 36 VSANAGSGKTHILVQRVLRL-----LLANAHPSTLLCLTHTKAAAAEMSHRV 82 + A G+GKTH +V+ + + L+ N+ +LC+T+T A E+++R+ Sbjct: 22 IYAGPGAGKTHFIVENIKNIISTNKLITNSENRKILCITYTNKAVDEIANRL 73 >gi|171318888|ref|ZP_02908022.1| exodeoxyribonuclease V, beta subunit [Burkholderia ambifaria MEX-5] gi|171095918|gb|EDT40856.1| exodeoxyribonuclease V, beta subunit [Burkholderia ambifaria MEX-5] Length = 1234 Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 26 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 85 Query: 95 ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + A + + D A + L + TIHAFC+ +Q+ Sbjct: 86 TGDDGGDPFVARLLETTLGDAGTLDPETAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143 >gi|157691415|ref|YP_001485877.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032] gi|157680173|gb|ABV61317.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032] Length = 740 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 38 ANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ L+A H P +L +T T AA EM RV I+ Sbjct: 31 AGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMRERVQAIL 80 >gi|325841946|ref|ZP_08167523.1| UvrD/REP helicase [Turicibacter sp. HGF1] gi|325489779|gb|EGC92134.1| UvrD/REP helicase [Turicibacter sp. HGF1] Length = 849 Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 41/178 (23%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 +L ++ + S+ + V A AG+GKT ++ RV + +LCLT T A Sbjct: 6 ELTGLNDAQSEVVSNLNDNLLVMAPAGTGKTKVISLRVAGFINQGIEAKEILCLTFTNKA 65 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 E++ R+L++ L+ E+ V+ Sbjct: 66 CHELAERLLKVTNG---LAKEVF-----------------------------------VK 87 Query: 135 TIHAFC-EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS--TLASIMLDNNEELK 189 T H+FC + I ++ I+ F++ DEE K L+ + K +A + +ELK Sbjct: 88 TFHSFCFQLIKEEAKNFGKISRDFSVMDEEDGKFLVRQLMKDDYVIADLAYQYLQELK 145 >gi|293375967|ref|ZP_06622227.1| UvrD/REP helicase [Turicibacter sanguinis PC909] gi|292645404|gb|EFF63454.1| UvrD/REP helicase [Turicibacter sanguinis PC909] Length = 849 Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 41/178 (23%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 +L ++ + S+ + V A AG+GKT ++ RV + +LCLT T A Sbjct: 6 ELTGLNDAQSEVVSNLNDNLLVMAPAGTGKTKVISLRVAGFINQGIEAKEILCLTFTNKA 65 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 E++ R+L++ L+ E+ V+ Sbjct: 66 CHELAERLLKVTNG---LAKEVF-----------------------------------VK 87 Query: 135 TIHAFC-EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS--TLASIMLDNNEELK 189 T H+FC + I ++ I+ F++ DEE K L+ + K +A + +ELK Sbjct: 88 TFHSFCFQLIKEEAKNFGKISRDFSVMDEEDGKFLVRQLMKDDYVIADLAYQYLQELK 145 >gi|302536761|ref|ZP_07289103.1| UvrD/REP helicase [Streptomyces sp. C] gi|302445656|gb|EFL17472.1| UvrD/REP helicase [Streptomyces sp. C] Length = 832 Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 72/163 (44%), Gaps = 34/163 (20%) Query: 23 EQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 EQL + P + A AGSGKT ++ RV+ L+ P +L LT T AA E++ Sbjct: 29 EQLACVTAPAAPQVIVAGAGSGKTTVMAARVVWLVGTGTVAPEQVLGLTFTNKAAGELAE 88 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG-LKVQTIHAF 139 RV + + A + ++D P+ +D+ T GG ++ T HAF Sbjct: 89 RVRKAL-AQAGVTD------------PDPSPADVEAG---------TAGGEPRISTYHAF 126 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 +++ L + E S +L+ +A + LA+ +L Sbjct: 127 AGQLLKDHGLRIGL---------EPSARLLADATRFQLAAKVL 160 >gi|167762854|ref|ZP_02434981.1| hypothetical protein BACSTE_01212 [Bacteroides stercoris ATCC 43183] gi|167699194|gb|EDS15773.1| hypothetical protein BACSTE_01212 [Bacteroides stercoris ATCC 43183] Length = 781 Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 13/106 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA------- 88 V A AGSGKT +L ++ LL P +L LT T AA EM R+ + A Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLENGYRPWDILALTFTNKAAREMKERIARQVGAERARHLW 84 Query: 89 ---WSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPG 129 + + IL AE +I G P + D + ++ LL +I++ G Sbjct: 85 MGTFHSIFLRILHAEAAQI-GFTPKFTVYDTADSKSLLRSIIKEMG 129 >gi|158334598|ref|YP_001515770.1| ATP-dependent DNA helicase PcrA [Acaryochloris marina MBIC11017] gi|158304839|gb|ABW26456.1| ATP-dependent DNA helicase PcrA [Acaryochloris marina MBIC11017] Length = 780 Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 16/143 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L++ + +P +L +T T AA EM R+ ++ D Sbjct: 28 VVAGAGSGKTRALTYRISNLVMRHQVNPENILAVTFTNKAAREMKERIEKLFAEQLAQQD 87 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ------QFP 148 + E+ Q + +K R + + P L + T H+ C +++ Q Sbjct: 88 HGKALELLAPQQQ-------TKLRSQVYKTITKP--LWIGTFHSLCARLLRMEIEKYQDE 138 Query: 149 LEANITSHFAIADEEQSKKLIEE 171 +F+I DE + LI++ Sbjct: 139 KGRKWQRNFSIFDESDVQSLIKD 161 >gi|315656421|ref|ZP_07909310.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492980|gb|EFU82582.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 877 Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L +R+ LL P +L +T T AAAEM RV ++ Sbjct: 82 VMAGAGSGKTRVLTRRIAWLLATERIRPWEVLAITFTNKAAAEMRQRVESLV 133 >gi|227486206|ref|ZP_03916522.1| ATP-dependent DNA helicase [Anaerococcus lactolyticus ATCC 51172] gi|227235837|gb|EEI85852.1| ATP-dependent DNA helicase [Anaerococcus lactolyticus ATCC 51172] Length = 853 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78 +S++++ A V A G+GKT+ +V++V+ L+ P+ +L T TK AA+E+ Sbjct: 3 NESQRIIIEKARTPAAVIAGPGTGKTYTIVKKVISLIKNEGISPNRILLTTFTKKAASEL 62 Query: 79 SHRVL 83 R++ Sbjct: 63 QTRII 67 >gi|194367786|ref|YP_002030396.1| exodeoxyribonuclease V subunit beta [Stenotrophomonas maltophilia R551-3] gi|194350590|gb|ACF53713.1| exodeoxyribonuclease V, beta subunit [Stenotrophomonas maltophilia R551-3] Length = 1226 Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 22/153 (14%) Query: 21 KSEQLLASDPTRS------AWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 K Q +A DP + + A+AG+GKT L RL++ +L +T T A Sbjct: 8 KETQRMAGDPYLALPLDGIRLIEASAGTGKTFTLATLFTRLVVEQGLRIGQILAVTFTDA 67 Query: 74 AAAEMSHRVLEIITAWSHLSD------EILSAEITK------IQGKKPNKSDMSKARHLL 121 A E+ R+ E + + L D E A +T+ +QG + S + + + Sbjct: 68 ATQELRKRIRERLALAARLVDLEPAEGEAPDARLTRDVLQRHLQGGSESASALKRRLQVA 127 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++ + TIH FC ++++ LE+ T Sbjct: 128 ADEIDLA---SIFTIHGFCTRVLREHALESGHT 157 >gi|21673182|ref|NP_661247.1| DNA helicase II [Chlorobium tepidum TLS] gi|21646262|gb|AAM71589.1| DNA helicase II [Chlorobium tepidum TLS] Length = 759 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 V A AGSGKT ++ R+ L+ P +L LT T AA EM R+ I+ S Sbjct: 36 VLAGAGSGKTRVITYRIAHLIRNVGVLPQNILALTFTNKAAGEMRQRIDSILEYGS 91 >gi|328955121|ref|YP_004372454.1| UvrD/REP helicase [Coriobacterium glomerans PW2] gi|328455445|gb|AEB06639.1| UvrD/REP helicase [Coriobacterium glomerans PW2] Length = 847 Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 39/137 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ ++ P +L +T T AAAEM R+ ++ Sbjct: 28 VLAGAGSGKTRVLTYRIAHMVADLGVRPWQILAITFTNKAAAEMRERIQALMDG------ 81 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G + G+ V T HA C I+++ T Sbjct: 82 -----------GMR---------------------GMWVCTFHAMCVRILREDADLIGYT 109 Query: 155 SHFAIADEEQSKKLIEE 171 F I D++ S++L+ + Sbjct: 110 GQFTIYDDDDSRRLVRD 126 >gi|194015861|ref|ZP_03054476.1| ATP-dependent DNA helicase PcrA [Bacillus pumilus ATCC 7061] gi|194012216|gb|EDW21783.1| ATP-dependent DNA helicase PcrA [Bacillus pumilus ATCC 7061] Length = 740 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 38 ANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ L+A H P +L +T T AA EM RV I+ Sbjct: 31 AGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMRERVQAIL 80 >gi|189463105|ref|ZP_03011890.1| hypothetical protein BACCOP_03815 [Bacteroides coprocola DSM 17136] gi|189430084|gb|EDU99068.1| hypothetical protein BACCOP_03815 [Bacteroides coprocola DSM 17136] Length = 784 Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 58/149 (38%), Gaps = 41/149 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT +L ++ LL P ++L LT T AA EM R+ + A Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLDNGYEPWSILALTFTNKAAREMKERIARRVGA------- 77 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +AR+L + T H+ I++ ++ Sbjct: 78 -------------------ERARYLWMG-----------TFHSIFSRILRTEAAAIGFSA 107 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDN 184 +F I D SK LI K+ + + LD+ Sbjct: 108 NFTIYDAADSKSLI----KAIIKEMQLDD 132 >gi|187776812|ref|ZP_02993285.1| hypothetical protein CLOSPO_00328 [Clostridium sporogenes ATCC 15579] gi|187775471|gb|EDU39273.1| hypothetical protein CLOSPO_00328 [Clostridium sporogenes ATCC 15579] Length = 738 Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Query: 14 IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71 +DL ++ EQ A+ + A AGSGKT +L R+ ++ N +PS +L +T T Sbjct: 1 MDLKNKLNKEQYEAATTIDGPLLILAGAGSGKTRVLTHRIAHMIENLNIYPSKILAITFT 60 Query: 72 KAAAAEMSHRVLEII 86 AA EM R+ ++ Sbjct: 61 NKAAGEMKERIKALV 75 >gi|87124723|ref|ZP_01080571.1| similar to UvrD/REP helicase [Synechococcus sp. RS9917] gi|86167602|gb|EAQ68861.1| similar to UvrD/REP helicase [Synechococcus sp. RS9917] Length = 1214 Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 21/155 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV-------LEIIT 87 + A+AG+GKT L VLRL+ + + LL +T T AAAAE+ R+ L+ + Sbjct: 18 LEASAGTGKTFALAHLVLRLITERDLDLNQLLVVTFTDAAAAELRDRIGRRLEQALQGLL 77 Query: 88 AWSHLSDEILSAEITKIQGKKP--------NKSDMSKARHL---LITILETPGGLKVQTI 136 A D + Q P + + R L L++ LE+ + TI Sbjct: 78 AIQTPEDSAAAQCGAAQQEADPVLRDWLARQGQEAGRCRELASRLLSALESLERADITTI 137 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 H FC +Q+ L++ A+ E S +L E Sbjct: 138 HGFCRRTLQRQALQSGQAMDPAL--ESDSDRLCRE 170 >gi|282882609|ref|ZP_06291228.1| putative DNA helicase II [Peptoniphilus lacrimalis 315-B] gi|281297584|gb|EFA90061.1| putative DNA helicase II [Peptoniphilus lacrimalis 315-B] Length = 977 Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 37/151 (24%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 + AG+GKT +L QR + ++ A N +L LT T A EM++R+ + L+ Sbjct: 22 SGAGTGKTGVLTQRFINIIKAQNGKFDNILALTFTDKATEEMNNRI------YHELAKTS 75 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 I K L + TIH+FC+ ++ + +I S+ Sbjct: 76 YDFNIDK---------------------------LNIMTIHSFCKDLILSYNRYLHINSN 108 Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 F + ++ + L++E+ K L++ NNE+ Sbjct: 109 FDLDNDFFCQILLKESIKKILSTY---NNED 136 >gi|315498764|ref|YP_004087568.1| uvrd/rep helicase [Asticcacaulis excentricus CB 48] gi|315416776|gb|ADU13417.1| UvrD/REP helicase [Asticcacaulis excentricus CB 48] Length = 772 Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A P +LC+T T AA EM R ++ Sbjct: 45 VLAGAGTGKTRVLTTRIAHILAQGLARPWEILCVTFTNKAAREMRERTTRLV 96 >gi|238921998|ref|YP_002935512.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium eligens ATCC 27750] gi|238873670|gb|ACR73378.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium eligens ATCC 27750] Length = 189 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 11/75 (14%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E + I+QT+ +AS P GSGKT +L R+ L+ PS+++ LT Sbjct: 78 EQTEAITQTEGNIRVASVP----------GSGKTFVLTYRIAYLITELFVEPSSIVALTF 127 Query: 71 TKAAAAEMSHRVLEI 85 T AA++M HR+ +I Sbjct: 128 TNKAASQMKHRLWKI 142 >gi|126664112|ref|ZP_01735105.1| ATP-dependent DNA helicase II [Flavobacteria bacterium BAL38] gi|126623826|gb|EAZ94521.1| ATP-dependent DNA helicase II [Flavobacteria bacterium BAL38] Length = 778 Score = 40.4 bits (93), Expect = 0.24, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 17 ISQ-TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 ISQ +++QL V A AGSGKT +L R+ L+ +L LT T AA Sbjct: 8 ISQLNEAQQLPVLQKDGPMIVIAGAGSGKTRVLTVRIANLMSQGVDAFNILALTFTNKAA 67 Query: 76 AEMSHRVLEII 86 EM R+ +I+ Sbjct: 68 REMKKRIADIV 78 >gi|260428560|ref|ZP_05782539.1| DNA helicase II [Citreicella sp. SE45] gi|260423052|gb|EEX16303.1| DNA helicase II [Citreicella sp. SE45] Length = 815 Score = 40.0 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ LL++ A P+ +L +T T AA EM RV Sbjct: 50 AGAGTGKTKALTSRIVHLLVSGKARPNEILSVTFTNKAAREMKERV 95 >gi|194246823|ref|YP_002004462.1| ATP-dependent DNA helicase [Candidatus Phytoplasma mali] gi|193807180|emb|CAP18621.1| ATP-dependent DNA helicase [Candidatus Phytoplasma mali] Length = 708 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 38/163 (23%), Positives = 69/163 (42%), Gaps = 43/163 (26%) Query: 17 ISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 + Q S+Q A + ++ ++ A AG+GKT L R+ L+ N + +L +T T A Sbjct: 7 LKQLNSKQYQAVTSKDKAVYLVAGAGTGKTKTLTIRIAYLIKYLNINNEKILAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM R++ + K D+ K+ + Sbjct: 67 ASEMKERLVAM-------------------------KVDIYKST--------------IC 87 Query: 135 TIHAFCEAIMQQF--PLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ I+++F L N S+++I D + S K+I++ K Sbjct: 88 TFHSLGNRILKKFIHVLNNNFDSNYSILDIKDSLKIIKKISKD 130 >gi|325269993|ref|ZP_08136602.1| DNA polymerase III, epsilon subunit [Prevotella multiformis DSM 16608] gi|324987716|gb|EGC19690.1| DNA polymerase III, epsilon subunit [Prevotella multiformis DSM 16608] Length = 896 Score = 40.0 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A+ G GKTHIL +R+ +LCLT T AA EM++R+ +++ Sbjct: 27 VLASPGCGKTHILAERIKYARERGVKYEDMLCLTFTNRAAREMTNRIQKVV 77 >gi|290559702|gb|EFD93027.1| DNA helicase II [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 108 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 32/107 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + AN G+GKT L RV+ L+ + + ++CLT T A EM ++ +E Sbjct: 9 IKANPGTGKTTALADRVVELVKNGVNENEIVCLTFTNKAVDEMFDKITN-----KFKENE 63 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 I A I GL + T H+FC A Sbjct: 64 IEPARIN---------------------------GLTIATFHSFCNA 83 >gi|326318047|ref|YP_004235719.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374883|gb|ADX47152.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 818 Score = 40.0 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 23 EQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMS 79 EQL A + P A + A AGSGKT +L R+ LL N + P +L +T T AA EM+ Sbjct: 38 EQLAAVTLPAGHALILAGAGSGKTRVLTTRI-AWLLQNGYVSPGGILAVTFTNKAAKEMT 96 Query: 80 HRV 82 R+ Sbjct: 97 ARL 99 >gi|308234140|ref|ZP_07664877.1| UvrD/REP helicase [Atopobium vaginae DSM 15829] gi|328943635|ref|ZP_08241100.1| ATP-dependent helicase PcrA [Atopobium vaginae DSM 15829] gi|327491604|gb|EGF23378.1| ATP-dependent helicase PcrA [Atopobium vaginae DSM 15829] Length = 868 Score = 40.0 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 47/156 (30%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ P ++L +T T AA EM R+ ++ Sbjct: 61 VLAGAGSGKTRVLTYRIAYLIEEQGVSPWSILAITFTNKAAKEMRERIEALL-------- 112 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P ++ G+ V T HA C I++ + Sbjct: 113 --------------PGRTQ----------------GMWVSTFHAMCVRILRTHAERLGYS 142 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 +F I D + +K+LI+ IM D N + KK Sbjct: 143 KNFTIYDTDDTKRLIKH--------IMGDLNLDPKK 170 >gi|297538070|ref|YP_003673839.1| UvrD/REP helicase [Methylotenera sp. 301] gi|297257417|gb|ADI29262.1| UvrD/REP helicase [Methylotenera sp. 301] Length = 677 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 14/105 (13%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85 V A AGSGKT ++ Q++ L+ A P + +T T AA EM RV ++ Sbjct: 22 VLAGAGSGKTRVITQKISYLIDEAGYSPKEIAAITFTNKAAREMQERVGKLMVGKNIKGL 81 Query: 86 -ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILET 127 I + L ++L AE + + G KP S D S + +L IL T Sbjct: 82 TIATFHSLGLQMLRAEAS-LLGYKPQFSILDSSDSFKILADILAT 125 >gi|258593628|emb|CBE69969.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 991 Score = 40.0 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 + A AG+GKT ++ R+ L+ + A P +L LT T+ AAAEM RV Sbjct: 37 IIAGAGTGKTTVIAHRIAHLINSRRARPEQVLALTFTEKAAAEMERRV 84 >gi|289422673|ref|ZP_06424513.1| ATP-dependent DNA helicase PcrA [Peptostreptococcus anaerobius 653-L] gi|289156852|gb|EFD05477.1| ATP-dependent DNA helicase PcrA [Peptostreptococcus anaerobius 653-L] Length = 625 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEI 85 V A GSGKT ++ R++ ++ ++ P T +L ++ TKA++ EM R L++ Sbjct: 21 VIAGPGSGKTRVIAHRIINMVKNHSIPPTRILAISFTKASSLEMKSRTLDM 71 >gi|170739391|ref|YP_001768046.1| UvrD/REP helicase [Methylobacterium sp. 4-46] gi|168193665|gb|ACA15612.1| UvrD/REP helicase [Methylobacterium sp. 4-46] Length = 789 Score = 40.0 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 2/68 (2%) Query: 23 EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 EQ A + T V A AG+GKT +L R+ L+ + A P +L +T T AA EM Sbjct: 38 EQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIAIGRARPFDILAVTFTNKAAREMKE 97 Query: 81 RVLEIITA 88 R+ +I A Sbjct: 98 RIGGLIGA 105 >gi|260062807|ref|YP_003195887.1| putative helicase [Robiginitalea biformata HTCC2501] gi|88784375|gb|EAR15545.1| putative helicase [Robiginitalea biformata HTCC2501] Length = 771 Score = 40.0 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ +L LT T AA EM R+ +I+ Sbjct: 23 VIAGAGSGKTRVLTYRIAHLMNQGVDAFNILSLTFTNKAAREMKKRIADIV 73 >gi|326776760|ref|ZP_08236025.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1] gi|326657093|gb|EGE41939.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1] Length = 1199 Score = 40.0 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 35/167 (20%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T AA Sbjct: 49 IPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 108 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E++ RV + + A A +T P+ PG + T Sbjct: 109 GELAERVRKALIA----------AGVTDPDVIDPDNP---------------PGEPTIST 143 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 HAF ++ + L + E S +L+ +A + LA+ +L Sbjct: 144 YHAFAGRLLTEHGLRIGL---------EPSTRLLADATRYQLAAKVL 181 >gi|309808403|ref|ZP_07702302.1| UvrD/REP helicase [Lactobacillus iners LactinV 01V1-a] gi|308168231|gb|EFO70350.1| UvrD/REP helicase [Lactobacillus iners LactinV 01V1-a] Length = 473 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%) Query: 36 VSANAGSGKTHILVQRVLRL-----LLANAHPSTLLCLTHTKAAAAEMSHRV 82 + A G+GKTH +V+ + + L+ N+ +LC+T+T A E+++R+ Sbjct: 22 IYAGPGAGKTHFIVENIKNIISTNKLITNSENRKILCITYTNKAVDEIANRL 73 >gi|189485729|ref|YP_001956670.1| ATP-dependent UvrD family DNA helicase PcrA [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287688|dbj|BAG14209.1| ATP-dependent UvrD family DNA helicase PcrA [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 772 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AG+GKT ++ R+ LL ++L +T T AA+EM R+ ++I Sbjct: 26 IFAGAGTGKTRVITHRIAYLLSLGVVSQSVLAVTFTNKAASEMKKRISDLIPG 78 >gi|87199314|ref|YP_496571.1| ATP-dependent DNA helicase Rep [Novosphingobium aromaticivorans DSM 12444] gi|87134995|gb|ABD25737.1| ATP-dependent DNA helicase, Rep family [Novosphingobium aromaticivorans DSM 12444] Length = 765 Score = 40.0 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AG+GKT L R+ LL A PS +LC+T T AA EM RV +I Sbjct: 38 AGAGTGKTAALTARLANLLRQRLAWPSEILCVTFTNKAAREMRERVGNLI 87 >gi|311067135|ref|YP_003972058.1| ATP-dependent DNA helicase [Bacillus atrophaeus 1942] gi|310867652|gb|ADP31127.1| ATP-dependent DNA helicase [Bacillus atrophaeus 1942] Length = 739 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 38 ANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ L+A H P +L +T T AA EM RV I+ Sbjct: 31 AGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMKERVESIL 80 >gi|304390802|ref|ZP_07372754.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325685|gb|EFL92931.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 877 Score = 40.0 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L +R+ LL P +L +T T AAAEM RV ++ Sbjct: 82 VMAGAGSGKTRVLTRRIAWLLATERIRPWEVLAITFTNKAAAEMRQRVESLV 133 >gi|118595284|ref|ZP_01552631.1| UvrD/REP helicase [Methylophilales bacterium HTCC2181] gi|118441062|gb|EAV47689.1| UvrD/REP helicase [Methylophilales bacterium HTCC2181] Length = 725 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 53/144 (36%), Gaps = 39/144 (27%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 +SA + A AGSGKT +L R L+ A P +L +T T AA EM Sbjct: 29 QSALILAGAGSGKTKVLTSRFAWLIQNQIASPGGILAVTFTNKAAKEM------------ 76 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + +I + P P G+ V T H C +++ + Sbjct: 77 ----------LVRISAQLP----------------INPRGMWVGTFHGLCNRFLKKHYQD 110 Query: 151 ANITSHFAIADEEQSKKLIEEAKK 174 A++ F I D K I+ K Sbjct: 111 ASLPQIFQILDSADQKSAIKRVMK 134 >gi|322373657|ref|ZP_08048193.1| ATP-dependent nuclease subunit A [Streptococcus sp. C150] gi|321278699|gb|EFX55768.1| ATP-dependent nuclease subunit A [Streptococcus sp. C150] Length = 1217 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 19/135 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L ++ L T T AA E+ R+ ++ Sbjct: 45 VSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELKERL-----------EK 93 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 L+ ++ +++ + R L + G + T+ AF + ++ Q+ ++ Sbjct: 94 RLTEQLGQVE--------TDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSP 145 Query: 156 HFAIADEEQSKKLIE 170 F I + + L++ Sbjct: 146 IFRIMTDPAEQTLMK 160 >gi|319902365|ref|YP_004162093.1| ATP-dependent DNA helicase PcrA [Bacteroides helcogenes P 36-108] gi|319417396|gb|ADV44507.1| ATP-dependent DNA helicase PcrA [Bacteroides helcogenes P 36-108] Length = 763 Score = 40.0 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 26/47 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L ++ LL P +L LT T AA EM R+ Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAAREMKERI 71 >gi|296118283|ref|ZP_06836864.1| ATP-dependent DNA helicase PcrA [Corynebacterium ammoniagenes DSM 20306] gi|295968841|gb|EFG82085.1| ATP-dependent DNA helicase PcrA [Corynebacterium ammoniagenes DSM 20306] Length = 926 Score = 40.0 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 53/206 (25%), Positives = 81/206 (39%), Gaps = 51/206 (24%) Query: 3 YHNSFQEHSETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANA 60 Y N Q + L+ +Q+ A T S + A AGSGKT +L +R+ L+ Sbjct: 119 YRNRPQLNVNEDKLVEGLNPQQVEAVQHTGSPLLIIAGAGSGKTAVLTRRIAYLMGTRGV 178 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 P +L +T T AAAEM RV +++ P M Sbjct: 179 APWEILAITFTNKAAAEMKERVGQLV---------------------GPVAERMW----- 212 Query: 121 LITILETPGGLKVQTIHAFCEAIM-QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 V T H+ C I+ QQ L + ++F I D + S++L L Sbjct: 213 ------------VATFHSICVRILRQQAQLVPGLNTNFTIYDGDDSRRL--------LTM 252 Query: 180 IMLDNNEELKKAFYEIL--EISNDED 203 I D ++KK +L +ISN ++ Sbjct: 253 IAKDMQLDIKKFTSRVLANQISNHKN 278 >gi|224024112|ref|ZP_03642478.1| hypothetical protein BACCOPRO_00831 [Bacteroides coprophilus DSM 18228] gi|224017334|gb|EEF75346.1| hypothetical protein BACCOPRO_00831 [Bacteroides coprophilus DSM 18228] Length = 793 Score = 40.0 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L ++ LL P ++L LT T AA EM R+ Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLDQGYKPWSILALTFTNKAAREMKERI 71 >gi|163800600|ref|ZP_02194501.1| putative ATP-dependent DNA helicase [Vibrio sp. AND4] gi|159176043|gb|EDP60837.1| putative ATP-dependent DNA helicase [Vibrio sp. AND4] Length = 637 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 +S AGSGKT+ LV+ +LR ++ + + C+T+T AA +E+ R+ Sbjct: 30 LSGGAGSGKTYSLVE-ILRAVINDTPSVNIACITYTNAAVSEIEDRL 75 >gi|153002977|ref|YP_001377302.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5] gi|152026550|gb|ABS24318.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5] Length = 779 Score = 40.0 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++V R+ RL+ P +L +T T AA EM R+ + Sbjct: 28 VLAGAGSGKTRVIVHRIARLVRDERVMPWHVLAVTFTNKAAGEMKDRL-----------E 76 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +L + ++ L VQT HAF +++ A + Sbjct: 77 ALLGTQASE---------------------------LWVQTFHAFGARFLRREAARAGLP 109 Query: 155 SHFAIADEEQSKKLIE 170 FAI D++ ++++ Sbjct: 110 PSFAIYDDDDQIRVVK 125 >gi|328957929|ref|YP_004375315.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. 17-4] gi|328674253|gb|AEB30299.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. 17-4] Length = 748 Score = 40.0 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 11/102 (10%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85 + A AGSGKT +L R+ L+ N +P +L +T T AA EM RV + Sbjct: 28 IMAGAGSGKTRVLTHRIAYLIEEKNVNPWNILAITFTNKAAKEMKERVTRLMKEGGSDVW 87 Query: 86 ITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILE 126 ++ + + IL +I +I K SD S+ + L+ IL+ Sbjct: 88 VSTFHSMCVRILRRDIDRIGYTKAFTISDPSEQQTLMKRILK 129 >gi|323499832|ref|ZP_08104791.1| exodeoxyribonuclease V beta chain [Vibrio sinaloensis DSM 21326] gi|323315073|gb|EGA68125.1| exodeoxyribonuclease V beta chain [Vibrio sinaloensis DSM 21326] Length = 1206 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 11/127 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT + LRLLL + T +L +T T+AA AE+ R+ Sbjct: 23 IEASAGTGKTFTIAGLYLRLLLGHGSAETRHQAPLTVDQILVVTFTEAATAELRDRIRAR 82 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 I A + L+ S+ I D +A +L+ V TIH FC+ ++ Sbjct: 83 IHA-ARLAFSRGSSHDPVIAPLLEEMPDHKQAAEVLLQAERQMDEAAVYTIHGFCQRMLT 141 Query: 146 QFPLEAN 152 Q E+ Sbjct: 142 QNAFESG 148 >gi|296330119|ref|ZP_06872601.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673364|ref|YP_003865036.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii str. W23] gi|296152708|gb|EFG93575.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411608|gb|ADM36727.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii str. W23] Length = 739 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 38 ANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ L+A H P +L +T T AA EM RV I+ Sbjct: 31 AGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMKERVESIL 80 >gi|294782871|ref|ZP_06748197.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 1_1_41FAA] gi|294481512|gb|EFG29287.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 1_1_41FAA] Length = 737 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 39/145 (26%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85 AS S + A AGSGKT + R+ ++ P ++L +T T AA EM RV Sbjct: 17 ASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVTFTNKAAKEMRERV--- 73 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 E L E+ K + T H+F +++ Sbjct: 74 ---------EDLVGEVAK--------------------------SCTISTFHSFGMRLLR 98 Query: 146 QFPLEANITSHFAIADEEQSKKLIE 170 + E +F I D + +++I+ Sbjct: 99 MYAAEVGYNPNFTIYDTDDQRRIIK 123 >gi|289640615|ref|ZP_06472787.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata] gi|289509504|gb|EFD30431.1| UvrD/REP helicase [Frankia symbiont of Datisca glomerata] Length = 1229 Score = 40.0 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Query: 22 SEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMS 79 SEQ+ A+ P + A AGSGKT ++ RV+ L+ P +L LT T AA E++ Sbjct: 70 SEQIAAATAPLEPGVIVAGAGSGKTSVMAARVVWLVATGQVAPGDVLGLTFTTKAAGELT 129 Query: 80 HRV 82 R+ Sbjct: 130 DRI 132 >gi|253580201|ref|ZP_04857468.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848720|gb|EES76683.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 744 Score = 40.0 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 39/137 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ L+ +P +L +T T AA+EM RV +I+ S Sbjct: 25 ILAGAGSGKTRVLTHRIAYLIDKKGINPWNILAITFTNKAASEMRERVDKIVGFGSE--- 81 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + V T H+ C I++++ Sbjct: 82 -----------------------------------SVWVSTFHSTCVRILRRYIDRLGYD 106 Query: 155 SHFAIADEEQSKKLIEE 171 + FAI D E K L++E Sbjct: 107 TRFAIYDTEDQKTLMKE 123 >gi|118619792|ref|YP_908124.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium ulcerans Agy99] gi|118571902|gb|ABL06653.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium ulcerans Agy99] Length = 769 Score = 40.0 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 40/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ L+ A +L +T T AAAE+ RV+ ++ Sbjct: 32 IVAGAGSGKTAVLTRRIAYLIAARGVGVGQILAITFTNKAAAEVRERVVSLVGG------ 85 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 +A+++ ++ T H+ C I++ Q L + Sbjct: 86 ---------------------RAKYMWVS-----------TFHSTCVRILRNQAALIKGL 113 Query: 154 TSHFAIADEEQSKKLIE 170 S+F+I D + S++L++ Sbjct: 114 NSNFSIYDADDSRRLLQ 130 >gi|16077729|ref|NP_388543.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str. 168] gi|221308498|ref|ZP_03590345.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str. 168] gi|221312821|ref|ZP_03594626.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317745|ref|ZP_03599039.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str. JH642] gi|221322024|ref|ZP_03603318.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str. SMY] gi|7674149|sp|O34580|PCRA_BACSU RecName: Full=ATP-dependent DNA helicase pcrA gi|2577965|emb|CAA75552.1| PcrA protein [Bacillus subtilis subsp. subtilis str. 168] gi|2632975|emb|CAB12481.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str. 168] Length = 739 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 38 ANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ L+A H P +L +T T AA EM RV I+ Sbjct: 31 AGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMKERVESIL 80 >gi|237808232|ref|YP_002892672.1| UvrD/REP helicase [Tolumonas auensis DSM 9187] gi|237500493|gb|ACQ93086.1| UvrD/REP helicase [Tolumonas auensis DSM 9187] Length = 698 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 16/86 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHR-----------VL 83 V A AG+GKT ++ R LL+ A A P +L L K AA EM R Sbjct: 217 VLAGAGTGKTSTMIGRAGYLLVTAQAQPEKILMLAFAKKAAGEMQERQDKCLRPLLKNAT 276 Query: 84 EIITAWSHLSDEILSAEITKIQGKKP 109 +I + L EI I K++GK P Sbjct: 277 PVIKTFHALGLEI----IGKVEGKWP 298 >gi|223040423|ref|ZP_03610697.1| ATP-dependent DNA helicase PcrA [Campylobacter rectus RM3267] gi|222878273|gb|EEF13380.1| ATP-dependent DNA helicase PcrA [Campylobacter rectus RM3267] Length = 698 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 DL+ Q Q +A+ A + A AGSGKT + R+ L+ PS L LT T Sbjct: 7 DLLDQLNENQRVAASHIDGAMLILAGAGSGKTKTITTRLAYLISEVGIAPSNTLTLTFTN 66 Query: 73 AAAAEMSHRVLEII 86 AA EM R L+++ Sbjct: 67 KAANEMRTRALKML 80 >gi|198275887|ref|ZP_03208418.1| hypothetical protein BACPLE_02062 [Bacteroides plebeius DSM 17135] gi|198271516|gb|EDY95786.1| hypothetical protein BACPLE_02062 [Bacteroides plebeius DSM 17135] Length = 784 Score = 40.0 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 ++ ++ +++++ E +L ++ + V A AGSGKT +L ++ LL P ++L LT Sbjct: 2 TDYLNELNESQREAVLYNEG--PSLVIAGAGSGKTRVLTYKIAYLLDNGYEPWSILALTF 59 Query: 71 TKAAAAEMSHRV 82 T AA EM R+ Sbjct: 60 TNKAAREMKERI 71 >gi|167766232|ref|ZP_02438285.1| hypothetical protein CLOSS21_00735 [Clostridium sp. SS2/1] gi|167712059|gb|EDS22638.1| hypothetical protein CLOSS21_00735 [Clostridium sp. SS2/1] gi|291559884|emb|CBL38684.1| ATP-dependent DNA helicase PcrA [butyrate-producing bacterium SSC/2] Length = 733 Score = 40.0 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ L+ +P ++ +T T AA EM RV +++ Sbjct: 26 AGAGSGKTRVLTHRIAYLMDQGVNPYHIMAITFTNKAAKEMRERVDDLV 74 >gi|73748886|ref|YP_308125.1| ATP-dependent DNA helicase PcrA [Dehalococcoides sp. CBDB1] gi|73660602|emb|CAI83209.1| ATP-dependent DNA helicase PcrA [Dehalococcoides sp. CBDB1] Length = 738 Score = 40.0 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 43/149 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A GSGKT ++ R+ L+ + P ++ +T T AA EM R+ ++ + Sbjct: 25 ILAGPGSGKTRVITHRIAYLIKVVGITPHRIMAVTFTNKAAREMETRLNQLAPS------ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G L + T HA C I++Q L + Sbjct: 79 --------------------------------AVGRLTMGTFHAICARILRQDGLPLGVP 106 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLD 183 S F I D++ + LI++A +A + LD Sbjct: 107 SDFVIYDDDDQQSLIKQA----MAELELD 131 >gi|255692465|ref|ZP_05416140.1| ATP-dependent DNA helicase PcrA [Bacteroides finegoldii DSM 17565] gi|260621733|gb|EEX44604.1| ATP-dependent DNA helicase PcrA [Bacteroides finegoldii DSM 17565] Length = 789 Score = 40.0 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 29/53 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT +L ++ LL +P +L LT T AA EM R+ + A Sbjct: 26 VIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNKAAREMKERIARQVGA 78 >gi|116334214|ref|YP_795741.1| superfamily I DNA/RNA helicase [Lactobacillus brevis ATCC 367] gi|116099561|gb|ABJ64710.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis ATCC 367] Length = 750 Score = 40.0 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 55/136 (40%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L RV L+ N P +L +T T AA EM RV++++ Sbjct: 27 VLAGAGSGKTRVLTHRVAYLIEHNNVMPWRILAITFTNKAAKEMRERVIKLL-------- 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P+ +D+ V T HA C I+++ + Sbjct: 79 -------------GPDGNDVW-----------------VSTFHALCVRILRRDADKLGYN 108 Query: 155 SHFAIADEEQSKKLIE 170 F IAD + + LI+ Sbjct: 109 RAFTIADPGEQRTLIK 124 >gi|116510847|ref|YP_808063.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactococcus lactis subsp. cremoris SK11] gi|123025697|sp|Q033I1|ADDA_LACLS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116106501|gb|ABJ71641.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactococcus lactis subsp. cremoris SK11] Length = 1203 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 ++ VSA+AGSGKT ++ QR++ + L T TK AA+E+ R+ Sbjct: 19 KNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAASELRMRL 69 >gi|321314390|ref|YP_004206677.1| ATP-dependent DNA helicase [Bacillus subtilis BSn5] gi|320020664|gb|ADV95650.1| ATP-dependent DNA helicase [Bacillus subtilis BSn5] Length = 739 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 38 ANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ L+A H P +L +T T AA EM RV I+ Sbjct: 31 AGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMKERVESIL 80 >gi|313200171|ref|YP_004038829.1| uvrd/rep helicase [Methylovorus sp. MP688] gi|312439487|gb|ADQ83593.1| UvrD/REP helicase [Methylovorus sp. MP688] Length = 720 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 P +SA + A AGSGKT +L R+ L+ P+ LL +T T AA EM R+ Sbjct: 25 PHQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPNGLLAVTFTNKAAKEMLTRL 78 >gi|291483101|dbj|BAI84176.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. natto BEST195] Length = 739 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 38 ANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ L+A H P +L +T T AA EM RV I+ Sbjct: 31 AGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMKERVESIL 80 >gi|113954443|ref|YP_729463.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9311] gi|113881794|gb|ABI46752.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9311] Length = 803 Score = 40.0 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 20/145 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+ + A P+ +L +T T AA EM R LE+ Sbjct: 24 VVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFTNKAAREMKER-LEL--------- 73 Query: 95 EILSAEITKIQGKKP-NKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQ------Q 146 +L+ + + Q +P + + R L I E L + T HA +++ + Sbjct: 74 -LLAQRLAQSQFGQPWSTLPPVEQRQLRTRIYREITKELWIGTFHALFARMLRFDIDKFK 132 Query: 147 FPLEANITSHFAIADEEQSKKLIEE 171 P T F+I DE ++ L++E Sbjct: 133 DPEGLTWTKQFSIYDEADAQSLVKE 157 >gi|37521963|ref|NP_925340.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421] gi|35212962|dbj|BAC90335.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421] Length = 793 Score = 40.0 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT +L R+ L+ P +L +T T AA EM R+L++ Sbjct: 26 VVAGAGSGKTRVLTYRIAHLIETYQVDPEHILAVTFTNKAAGEMKERILQL 76 >gi|317497585|ref|ZP_07955903.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 5_1_63FAA] gi|316895144|gb|EFV17308.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 5_1_63FAA] Length = 733 Score = 40.0 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ L+ +P ++ +T T AA EM RV +++ Sbjct: 26 AGAGSGKTRVLTHRIAYLMDQGVNPYHIMAITFTNKAAKEMRERVDDLV 74 >gi|289432882|ref|YP_003462755.1| UvrD/REP helicase [Dehalococcoides sp. GT] gi|288946602|gb|ADC74299.1| UvrD/REP helicase [Dehalococcoides sp. GT] Length = 738 Score = 40.0 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 43/149 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A GSGKT ++ R+ L+ + P ++ +T T AA EM R+ ++ + Sbjct: 25 ILAGPGSGKTRVITHRIAYLIKVVGITPHRIMAVTFTNKAAREMETRLNQLAPS------ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G L + T HA C I++Q L + Sbjct: 79 --------------------------------AVGRLTMGTFHAICARILRQDGLPLGVP 106 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLD 183 S F I D++ + LI++A +A + LD Sbjct: 107 SDFVIYDDDDQQSLIKQA----MAELELD 131 >gi|256369829|ref|YP_003107340.1| DNA helicase II [Brucella microti CCM 4915] gi|255999992|gb|ACU48391.1| DNA helicase II [Brucella microti CCM 4915] Length = 858 Score = 40.0 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 3/81 (3%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 Q+H E D + EQ A T V A AG+GKT +L R+ +L A+PS + Sbjct: 37 QQHGEP-DYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQI 95 Query: 66 LCLTHTKAAAAEMSHRVLEII 86 L +T AA EM R+ ++ Sbjct: 96 LAVTFINKAAREMKERIGHLV 116 >gi|114766608|ref|ZP_01445560.1| DNA helicase II, putative [Pelagibaca bermudensis HTCC2601] gi|114541148|gb|EAU44201.1| DNA helicase II, putative [Roseovarius sp. HTCC2601] Length = 816 Score = 40.0 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ LL++ A P+ +L +T T AA EM RV Sbjct: 50 AGAGTGKTKALTSRIVHLLVSGKARPNEILSVTFTNKAAREMKTRV 95 >gi|329946360|ref|ZP_08293927.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386] gi|328527336|gb|EGF54334.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386] Length = 1146 Score = 40.0 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT + QRV+ L+ P +L LT T+ A AE+ RV +T Sbjct: 40 VVAGAGSGKTATMAQRVVYLVATGQVRPDQVLGLTFTRKATAELDQRVASRLTG 93 >gi|270294147|ref|ZP_06200349.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275614|gb|EFA21474.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 784 Score = 40.0 bits (92), Expect = 0.26, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 26/47 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L ++ LL P +L LT T AA EM R+ Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAAREMKERI 71 >gi|253998105|ref|YP_003050168.1| UvrD/REP helicase [Methylovorus sp. SIP3-4] gi|253984784|gb|ACT49641.1| UvrD/REP helicase [Methylovorus sp. SIP3-4] Length = 720 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 P +SA + A AGSGKT +L R+ L+ P+ LL +T T AA EM R+ Sbjct: 25 PHQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPNGLLAVTFTNKAAKEMLTRL 78 >gi|241896132|ref|ZP_04783428.1| ATP-dependent DNA helicase PcrA [Weissella paramesenteroides ATCC 33313] gi|241870646|gb|EER74397.1| ATP-dependent DNA helicase PcrA [Weissella paramesenteroides ATCC 33313] Length = 759 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 14/104 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85 + A AGSGKT +L RV L+ + P +L +T T AA EM R+ ++ Sbjct: 25 IMAGAGSGKTRVLTHRVAHLIQDLDVLPWRILAITFTNKAAREMKERISQLVEESDAEAV 84 Query: 86 -ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILE 126 ++ + L+ IL +I K+ G K + S D S R L+ IL+ Sbjct: 85 WVSTFHALAVRILRRDIDKL-GYKKDFSIIDASAQRTLIKRILK 127 >gi|227523030|ref|ZP_03953079.1| ATP-dependent DNA helicase PcrA [Lactobacillus hilgardii ATCC 8290] gi|227089848|gb|EEI25160.1| ATP-dependent DNA helicase PcrA [Lactobacillus hilgardii ATCC 8290] Length = 743 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 56/190 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ ++ N P +L +T T AA EM RV +++ Sbjct: 27 IMAGAGSGKTRVLTHRIAYIIEHNHVMPWNILAITFTNKAAREMRERVSKLLD------- 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E+ + V T HA C I+++ + Sbjct: 80 -------------------------------ESGDDVWVSTFHALCVRILRRNIDQLGFN 108 Query: 155 SHFAIADEEQSKKLIEEA------------KKSTLASIMLDNNEEL-KKAFYEILEISND 201 F IAD + + L++ ++ L+SI N+ L KAF + D Sbjct: 109 RAFTIADTSEQRTLVKRVLRELNIDPKRFDPRAVLSSISNAKNDLLTPKAF----KAQAD 164 Query: 202 EDIETLISDI 211 D + +++D+ Sbjct: 165 SDFDQIVADV 174 >gi|195977957|ref|YP_002123201.1| ATP-dependent nuclease subunit A AddA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|251764553|sp|B4U2H1|ADDA_STREM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|195974662|gb|ACG62188.1| ATP-dependent nuclease subunit A AddA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 1214 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 21/125 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII-TAWSHLSD 94 VSA+AGSGKT ++V+R+L +L L T T AA E+ R+ + + TA + D Sbjct: 46 VSASAGSGKTFVMVERILDKILRGISVDRLFISTFTVKAATELIERIEKKLHTAIAETQD 105 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 L A + Q + +++D+ T+ AF + ++ Q I+ Sbjct: 106 YQLKAYLND-QLQALSQADIG-------------------TMDAFAQKLVHQHGYVLGIS 145 Query: 155 SHFAI 159 HF I Sbjct: 146 PHFRI 150 >gi|157412666|ref|YP_001483532.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9215] gi|157387241|gb|ABV49946.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9215] Length = 802 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 2/54 (3%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT L R+ L+ N+ P +L +T T AA EM R LE++ A Sbjct: 29 VVAGAGSGKTKALTHRIANLIENNSIDPYNILAVTFTNKAAKEMKAR-LEVLLA 81 >gi|148244458|ref|YP_001219152.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Candidatus Vesicomyosocius okutanii HA] gi|146326285|dbj|BAF61428.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Candidatus Vesicomyosocius okutanii HA] Length = 717 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 ++A + A AGSGKT +L+ R+ L+ + H +L +T T AA EM R+ +++ Sbjct: 24 KNALILAGAGSGKTKVLIHRIAYLITQKDIHIDAILAVTFTNKAATEMCERLSKLL 79 >gi|88705431|ref|ZP_01103142.1| DNA helicase II [Congregibacter litoralis KT71] gi|88700521|gb|EAQ97629.1| DNA helicase II [Congregibacter litoralis KT71] Length = 717 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 V A AGSGKT +LV R+ L+ A P +L +T T AA EM R+ ++ +H Sbjct: 27 VLAGAGSGKTRVLVHRIAWLIRAEGLSPHAVLAVTFTNKAAREMRGRIEHMLQIPTH 83 >gi|319954736|ref|YP_004166003.1| uvrd/rep helicase [Cellulophaga algicola DSM 14237] gi|319423396|gb|ADV50505.1| UvrD/REP helicase [Cellulophaga algicola DSM 14237] Length = 686 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AG+GKT ++ R L+ + PS + LT TK AA E+ RV Sbjct: 24 VLAGAGTGKTRTIIARAAHLIASGVDPSKIQILTFTKKAANEIVERV 70 >gi|262170720|ref|ZP_06038398.1| exodeoxyribonuclease V beta chain [Vibrio mimicus MB-451] gi|261891796|gb|EEY37782.1| exodeoxyribonuclease V beta chain [Vibrio mimicus MB-451] Length = 1208 Score = 40.0 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 11/126 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + + L+ ++E ++ +D S A LL+ + TIH FC+ ++ Sbjct: 85 LHD-ARLAFARGASEDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRMLT 143 Query: 146 QFPLEA 151 Q E+ Sbjct: 144 QNAFES 149 >gi|307547016|ref|YP_003899495.1| DNA-dependent helicase II [Halomonas elongata DSM 2581] gi|307219040|emb|CBV44310.1| DNA-dependent helicase II [Halomonas elongata DSM 2581] Length = 762 Score = 40.0 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPS 63 ++F T L +++ S P + V A AGSGKT +LV R+ L+ A P Sbjct: 25 DAFPMDDVTAILDQMNPAQREAVSAPQGNMLVLAGAGSGKTRVLVHRIAWLMQAEGLSPY 84 Query: 64 TLLCLTHTKAAAAEMSHRV 82 +L +T T AA EM R+ Sbjct: 85 AVLAVTFTNKAAREMRTRL 103 >gi|294786537|ref|ZP_06751791.1| UvrD/REP helicase subfamily [Parascardovia denticolens F0305] gi|315226115|ref|ZP_07867903.1| UvrD/REP helicase subfamily [Parascardovia denticolens DSM 10105] gi|294485370|gb|EFG33004.1| UvrD/REP helicase subfamily [Parascardovia denticolens F0305] gi|315120247|gb|EFT83379.1| UvrD/REP helicase subfamily [Parascardovia denticolens DSM 10105] Length = 1674 Score = 40.0 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAA 76 + + E ++ + + + A AGSGKT+++ +R+ +L+ + P +L LT T+ AA Sbjct: 10 ANEQQEDIIQAPADQDLLIVAGAGSGKTYVMTKRIAKLITDDGVAPHKILGLTFTRKAAG 69 Query: 77 EMSHRVLEIITAWS 90 E+ RV + ++ S Sbjct: 70 ELLDRVTKETSSLS 83 >gi|169833925|ref|YP_001694551.1| recombination helicase AddA [Streptococcus pneumoniae Hungary19A-6] gi|251764563|sp|B1IBR6|ADDA_STRPI RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|168996427|gb|ACA37039.1| recombination helicase AddA [Streptococcus pneumoniae Hungary19A-6] Length = 1216 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ +D+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAANELKERLEKKISKKIQETDD 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|254566359|ref|XP_002490290.1| Mitochondrial inner membrane localized ATP-dependent DNA helicase [Pichia pastoris GS115] gi|238030086|emb|CAY68009.1| Mitochondrial inner membrane localized ATP-dependent DNA helicase [Pichia pastoris GS115] gi|328350684|emb|CCA37084.1| hypothetical protein PP7435_Chr1-0950 [Pichia pastoris CBS 7435] Length = 701 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 32/58 (55%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 +P + + A G GKTH L+ R++ LL + P +L L+ T A + R+++++ Sbjct: 27 EPLTALKIVAGPGCGKTHTLIARIVHLLNSEVDPCQILVLSLTNRAVLSLRSRLIDLV 84 >gi|160889899|ref|ZP_02070902.1| hypothetical protein BACUNI_02330 [Bacteroides uniformis ATCC 8492] gi|317478904|ref|ZP_07938052.1| UvrD/REP helicase [Bacteroides sp. 4_1_36] gi|156860891|gb|EDO54322.1| hypothetical protein BACUNI_02330 [Bacteroides uniformis ATCC 8492] gi|316904938|gb|EFV26744.1| UvrD/REP helicase [Bacteroides sp. 4_1_36] Length = 784 Score = 40.0 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 26/47 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L ++ LL P +L LT T AA EM R+ Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNKAAREMKERI 71 >gi|320531921|ref|ZP_08032829.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337] gi|320135863|gb|EFW27903.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337] Length = 886 Score = 40.0 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT + QRV+ L+ P +L LT T+ A AE+ RV Sbjct: 40 VVAGAGSGKTATMAQRVVHLVATGQVRPDQILGLTFTRKATAELDQRV 87 >gi|258627298|ref|ZP_05722082.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM603] gi|258580336|gb|EEW05301.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM603] Length = 1208 Score = 40.0 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 11/126 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + + L+ ++E ++ +D S A LL+ + TIH FC+ ++ Sbjct: 85 LHD-ARLAFARGASEDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRMLT 143 Query: 146 QFPLEA 151 Q E+ Sbjct: 144 QNAFES 149 >gi|227554836|ref|ZP_03984883.1| possible ATP-dependent DNA helicase PcrA [Enterococcus faecalis HH22] gi|227176036|gb|EEI57008.1| possible ATP-dependent DNA helicase PcrA [Enterococcus faecalis HH22] Length = 405 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ +P +L +T T AA EM RV Sbjct: 67 VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153 NK +LET G + V T H+ C I+++ + Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147 Query: 154 TSHFAIADEEQSKKLIE 170 +F I D + K L++ Sbjct: 148 NRNFTIIDPSEQKTLMK 164 >gi|205356745|ref|ZP_03223505.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345384|gb|EDZ32027.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni CG8421] Length = 676 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S+ +EQ LA+ V A+AG+GKT +V R+ LL P ++ LT T A+ Sbjct: 3 LSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNKAS 62 Query: 76 AEMSHRV 82 EM R+ Sbjct: 63 KEMIGRL 69 >gi|220927829|ref|YP_002504738.1| ATP-dependent DNA helicase PcrA [Clostridium cellulolyticum H10] gi|219998157|gb|ACL74758.1| ATP-dependent DNA helicase PcrA [Clostridium cellulolyticum H10] Length = 785 Score = 40.0 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ + +PS +L +T T AA EM R+ +I Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIEQHGIYPSNILAITFTNKAAREMKERIAGLI 75 >gi|225075883|ref|ZP_03719082.1| hypothetical protein NEIFLAOT_00906 [Neisseria flavescens NRL30031/H210] gi|224952829|gb|EEG34038.1| hypothetical protein NEIFLAOT_00906 [Neisseria flavescens NRL30031/H210] Length = 666 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 49/187 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L++ + P T+ +T T AA EM RV +++ Sbjct: 20 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAATEMQERVSKMLPK------ 73 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 S+ R GL + T H+ I+++ + Sbjct: 74 --------------------SQTR-----------GLTICTFHSLGMKILREEANQIGYK 102 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND----EDIETLISD 210 +F+I D S K+I E T E + KA ++I ND ED+ S+ Sbjct: 103 KNFSILDSTDSAKIIGELLGGT-------GKEAIFKAQHQISLWKNDLKTPEDVVQTASN 155 Query: 211 IISNRTA 217 + +TA Sbjct: 156 VWEQQTA 162 >gi|149025505|ref|ZP_01836438.1| exonuclease RexA [Streptococcus pneumoniae SP23-BS72] gi|147929377|gb|EDK80374.1| exonuclease RexA [Streptococcus pneumoniae SP23-BS72] Length = 1216 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ +D+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAANELKERLEKKISKKIQETDD 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|148243810|ref|YP_001220049.1| UvrD/REP helicase [Acidiphilium cryptum JF-5] gi|146400373|gb|ABQ28907.1| ATP-dependent DNA helicase, Rep family [Acidiphilium cryptum JF-5] Length = 717 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 28/50 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT L RV L++ P +L ++ ++ AAAEM R I Sbjct: 55 VIAGAGSGKTSTLAHRVAHLIVNGVDPRRILLMSFSRRAAAEMIRRAERI 104 >gi|85714693|ref|ZP_01045680.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A] gi|85698578|gb|EAQ36448.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A] Length = 814 Score = 40.0 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A P +L +T T AA EM HR+ +++ Sbjct: 53 VLAGAGTGKTRVLTTRIAHILSQGRARPGEVLSVTFTNKAAREMKHRLGQML 104 >gi|254225834|ref|ZP_04919438.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V51] gi|125621648|gb|EAZ49978.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V51] Length = 1208 Score = 40.0 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 11/126 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + + L+ ++E ++ +D S A LL+ + TIH FC+ ++ Sbjct: 85 LHD-ARLAFARGASEDLLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRMLT 143 Query: 146 QFPLEA 151 Q E+ Sbjct: 144 QNAFES 149 >gi|302386124|ref|YP_003821946.1| UvrD/REP helicase [Clostridium saccharolyticum WM1] gi|302196752|gb|ADL04323.1| UvrD/REP helicase [Clostridium saccharolyticum WM1] Length = 762 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ + +P +L +T T AA EM RV ++ Sbjct: 24 VLAGAGSGKTRVLTHRIAYLIEEKSINPWNILAITFTNKAAGEMRERVDRLV 75 >gi|262166384|ref|ZP_06034121.1| exodeoxyribonuclease V beta chain [Vibrio mimicus VM223] gi|262026100|gb|EEY44768.1| exodeoxyribonuclease V beta chain [Vibrio mimicus VM223] Length = 1208 Score = 40.0 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 11/126 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + + L+ ++E ++ +D S A LL+ + TIH FC+ ++ Sbjct: 85 LHD-ARLAFARGASEDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRMLT 143 Query: 146 QFPLEA 151 Q E+ Sbjct: 144 QNAFES 149 >gi|146280569|ref|YP_001170722.1| DNA-dependent helicase II [Pseudomonas stutzeri A1501] gi|145568774|gb|ABP77880.1| DNA helicase II [Pseudomonas stutzeri A1501] Length = 729 Score = 40.0 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 39/142 (27%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P V A AGSGKT +LV R+ L + A ++L +T T AAAEM R+ +++ Sbjct: 23 PLGRQLVLAGAGSGKTRVLVHRIAWLHQVERASLHSILSVTFTNKAAAEMRQRIEQLL-- 80 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 H++ P G+ V T H +++ Sbjct: 81 --HVN----------------------------------PQGMWVGTFHGLAHRLLRAHW 104 Query: 149 LEANITSHFAIADEEQSKKLIE 170 EA + +F I D + ++L++ Sbjct: 105 REAKLAENFQILDSDDQQRLVK 126 >gi|319426281|gb|ADV54355.1| exodeoxyribonuclease V, beta subunit [Shewanella putrefaciens 200] Length = 1256 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 10/140 (7%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87 S + A+AG+GKT+ + LRLLL + + L C +T T AA E+ R+ I Sbjct: 35 SRLIEASAGTGKTYTISGLYLRLLLGDGIDTPLTCEQILVVTFTNAATEELRDRIRRRIQ 94 Query: 88 AW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 L I + + P + S A L++ + TIH FC+ I+ Sbjct: 95 VAFKCFLGLPIEDPFVQALYDNTP-VDERSIALRRFDLALKSLDEAAIFTIHGFCQRILS 153 Query: 146 QFPLEANI--TSHFAIADEE 163 E+++ S F + D E Sbjct: 154 DLAFESSLLFESDFTLDDSE 173 >gi|121613648|ref|YP_001000466.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni 81-176] gi|87249507|gb|EAQ72467.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp. jejuni 81-176] Length = 676 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S+ +EQ LA+ V A+AG+GKT +V R+ LL P ++ LT T A+ Sbjct: 3 LSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNKAS 62 Query: 76 AEMSHRV 82 EM R+ Sbjct: 63 KEMIGRL 69 >gi|329118947|ref|ZP_08247642.1| ATP-dependent helicase PcrA [Neisseria bacilliformis ATCC BAA-1200] gi|327464975|gb|EGF11265.1| ATP-dependent helicase PcrA [Neisseria bacilliformis ATCC BAA-1200] Length = 671 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 42/155 (27%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAA 76 SQT++ + L +V A AGSGKT ++ +++ ++ A P T+ +T T AA Sbjct: 6 SQTEAVRYLGG----PLFVLAGAGSGKTRVITEKIAYMITQAGYKPHTIAAITFTNKAAR 61 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV +++ S+ R GL V T Sbjct: 62 EMQERVAKMLP--------------------------RSQTR-----------GLTVCTF 84 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 H+ I+++ A + +F+I D S K+I E Sbjct: 85 HSLGMRILREEAHAAGLKKNFSILDATDSGKIIGE 119 >gi|327389308|gb|EGE87653.1| ATP-dependent helicase/nuclease subunit A domain protein [Streptococcus pneumoniae GA04375] Length = 183 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 VSA+AGSGKT ++V+R+L L S L T T AA E+ R+ Sbjct: 45 VSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELKERL 91 >gi|289191863|ref|YP_003457804.1| UvrD/REP helicase [Methanocaldococcus sp. FS406-22] gi|288938313|gb|ADC69068.1| UvrD/REP helicase [Methanocaldococcus sp. FS406-22] Length = 734 Score = 40.0 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 35 WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 WV A GSGKT LV R L+L+ N +P +++ T T+ AA + R+ Sbjct: 35 WVIAGPGSGKTETLVIRTLKLIFVDNVNPKSIVITTFTEKAAKNIKDRI 83 >gi|182436134|ref|YP_001823853.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464650|dbj|BAG19170.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 1162 Score = 40.0 bits (92), Expect = 0.28, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 35/167 (20%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T AA Sbjct: 17 IPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 76 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E++ RV + + A A +T P+ PG + T Sbjct: 77 GELAERVRKALIA----------AGVTDPDVIDPDNP---------------PGEPTIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 HAF ++ + L + E S +L+ +A + LA+ +L Sbjct: 112 YHAFAGRLLTEHGLRIGL---------EPSTRLLADATRYQLAAKVL 149 >gi|154175325|ref|YP_001408248.1| acyl carrier protein [Campylobacter curvus 525.92] gi|112802789|gb|EAU00133.1| acyl carrier protein [Campylobacter curvus 525.92] Length = 677 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 17 ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S+ EQ A+ P + A+AG+GKT +V R+ LL +L LT T AA Sbjct: 3 LSRLNKEQYTAATAPAGHNLIIASAGTGKTSTIVARIAHLLNLGIDAKRILLLTFTNKAA 62 Query: 76 AEMSHRV 82 AEM R+ Sbjct: 63 AEMIERL 69 >gi|227512902|ref|ZP_03942951.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri ATCC 11577] gi|227083902|gb|EEI19214.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri ATCC 11577] Length = 743 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 56/190 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ ++ N P +L +T T AA EM RV +++ Sbjct: 27 IMAGAGSGKTRVLTHRIAYIIEHNHVMPWNILAITFTNKAAREMRERVSKLLD------- 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E+ + V T HA C I+++ + Sbjct: 80 -------------------------------ESGDDVWVSTFHALCVRILRRNIDQLGFN 108 Query: 155 SHFAIADEEQSKKLIEEA------------KKSTLASIMLDNNEEL-KKAFYEILEISND 201 F IAD + + L++ ++ L+SI N+ L KAF + D Sbjct: 109 RAFTIADTSEQRTLVKRVLRELNIDPKRFDPRAVLSSISNAKNDLLTPKAF----KAQAD 164 Query: 202 EDIETLISDI 211 D + +++D+ Sbjct: 165 SDFDQIVADV 174 >gi|109898585|ref|YP_661840.1| UvrD/REP helicase [Pseudoalteromonas atlantica T6c] gi|109700866|gb|ABG40786.1| UvrD/REP helicase [Pseudoalteromonas atlantica T6c] Length = 957 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AG+GKT ++V R LL + A P +L L + + AA E+ R+ + S + Sbjct: 259 AGAGTGKTSVMVGRAGYLLTSGQAKPDDILLLAYGQKAATEIDERIKHKLDGQSIKASTF 318 Query: 97 LSAE---ITKIQGKKP 109 S IT ++GKKP Sbjct: 319 HSLGLYIITSVEGKKP 334 >gi|253578540|ref|ZP_04855812.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850858|gb|EES78816.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 608 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII 86 V A GSGKT ++V+R ++ P S++L +T ++AAA EM R L+ + Sbjct: 20 VLAGPGSGKTSVIVERTAYMINEGKIPASSILVVTFSRAAATEMKERFLKFV 71 >gi|328884882|emb|CCA58121.1| ATP-dependent DNA helicase [Streptomyces venezuelae ATCC 10712] Length = 919 Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 35/167 (20%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 I T + + P V A AGSGKT ++ RV+ L+ P +L LT T AA Sbjct: 27 IPFTPEQTACITAPLAPQVVVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 86 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E++ RV ++ A +T P+ E PG ++ T Sbjct: 87 GELAERV----------RTALVRAGVTDPDVIDPD---------------EPPGEPRIST 121 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 HAF ++ L + E + +L+ +A + LA+ +L Sbjct: 122 YHAFAGRLLTDHGLRIGL---------EPTSRLLADATRYQLAARVL 159 >gi|325860059|ref|ZP_08173185.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A] gi|325482344|gb|EGC85351.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A] Length = 1111 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 8/127 (6%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH--LSD 94 A+AGSGKT L + L++ N +L +T T A EM R+L + +H Sbjct: 27 ASAGSGKTFTLASEYITLVVKNPQDYKKILAVTFTNKATQEMKIRILSQLYGIAHHLPGS 86 Query: 95 EILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + ++ + G + + + ++A LL +VQTI AF +++++ E N Sbjct: 87 QAYFDQVVRKTGFQETVIRENAAEALSLLTHHYNE---FRVQTIDAFFQSVLRNLARELN 143 Query: 153 ITSHFAI 159 +T++ I Sbjct: 144 LTANLRI 150 >gi|260881564|ref|ZP_05404714.2| helicase, UvrD/REP/exonuclease family protein [Mitsuokella multacida DSM 20544] gi|260848768|gb|EEX68775.1| helicase, UvrD/REP/exonuclease family protein [Mitsuokella multacida DSM 20544] Length = 874 Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVL 83 D T + + A AG+GKT+ L R+ +L A P +LCLT T A EM R++ Sbjct: 28 DLTDNILLLAPAGTGKTNTLAYRIANILAEGRAEPEEILCLTFTNKACREMKERIV 83 >gi|169630596|ref|YP_001704245.1| ATP-dependent DNA helicase [Mycobacterium abscessus ATCC 19977] gi|169242563|emb|CAM63591.1| Probable ATP-dependent DNA helicase [Mycobacterium abscessus] Length = 1078 Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 3/76 (3%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLL 66 E S + L T + + P V A AG+GKT + RV+ L+AN A P +L Sbjct: 8 ELSRVLGLFEPTDEQAAVIGAPPGPMVVIAGAGAGKTETMAARVV-WLVANGYATPGQVL 66 Query: 67 CLTHTKAAAAEMSHRV 82 LT T+ AAA++ RV Sbjct: 67 GLTFTRKAAAQLLRRV 82 >gi|163789389|ref|ZP_02183828.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. AT7] gi|159875243|gb|EDP69308.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. AT7] Length = 750 Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 11/102 (10%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85 + A AGSGKT +L R+ L+ N +P +L +T T AA EM RV + Sbjct: 28 IMAGAGSGKTRVLTHRIAYLIEEKNVNPWNILAITFTNKAAKEMKERVTRLMKEGGSDVW 87 Query: 86 ITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILE 126 ++ + + IL +I +I K SD S+ + L+ IL+ Sbjct: 88 VSTFHSMCVRILRRDIDRIGYTKAFTISDPSEQQTLMKRILK 129 >gi|146293207|ref|YP_001183631.1| exodeoxyribonuclease V subunit beta [Shewanella putrefaciens CN-32] gi|145564897|gb|ABP75832.1| exodeoxyribonuclease V, beta subunit [Shewanella putrefaciens CN-32] Length = 1251 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 10/140 (7%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87 S + A+AG+GKT+ + LRLLL + + L C +T T AA E+ R+ I Sbjct: 30 SRLIEASAGTGKTYTISGLYLRLLLGDGIDTPLTCEQILVVTFTNAATEELRDRIRRRIQ 89 Query: 88 AW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 L I + + P + S A L++ + TIH FC+ I+ Sbjct: 90 VAFKCFLGLPIEDPFVQALYDNTP-VDERSIALRRFDLALKSLDEAAIFTIHGFCQRILS 148 Query: 146 QFPLEANI--TSHFAIADEE 163 E+++ S F + D E Sbjct: 149 DLAFESSLLFESDFTLDDSE 168 >gi|9257172|pdb|2PJR|A Chain A, Helicase Product Complex gi|9257173|pdb|2PJR|F Chain F, Helicase Product Complex Length = 548 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT +L R+ L+A H P +L +T T AA EM RV Sbjct: 29 IMAGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMRERV 76 >gi|147669647|ref|YP_001214465.1| UvrD/REP helicase [Dehalococcoides sp. BAV1] gi|146270595|gb|ABQ17587.1| UvrD/REP helicase [Dehalococcoides sp. BAV1] Length = 738 Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 43/149 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A GSGKT ++ R+ L+ + P ++ +T T AA EM R+ ++ + Sbjct: 25 ILAGPGSGKTRVITHRIAYLIKVVGITPHRIMAVTFTNKAAREMETRLNQLAPS------ 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G L + T HA C I++Q L + Sbjct: 79 --------------------------------AVGRLTMGTFHAICARILRQDGLPLGVP 106 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLD 183 S F I D++ + LI++A +A + LD Sbjct: 107 SDFVIYDDDDQQSLIKQA----MAELELD 131 >gi|120598716|ref|YP_963290.1| exodeoxyribonuclease V subunit beta [Shewanella sp. W3-18-1] gi|120558809|gb|ABM24736.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. W3-18-1] Length = 1256 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 10/140 (7%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87 S + A+AG+GKT+ + LRLLL + + L C +T T AA E+ R+ I Sbjct: 35 SRLIEASAGTGKTYTISGLYLRLLLGDGIDTPLTCEQILVVTFTNAATEELRDRIRRRIQ 94 Query: 88 AW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 L I + + P + S A L++ + TIH FC+ I+ Sbjct: 95 VAFKCFLGLPIEDPFVQALYDNTP-VDERSIALRRFDLALKSLDEAAIFTIHGFCQRILS 153 Query: 146 QFPLEANI--TSHFAIADEE 163 E+++ S F + D E Sbjct: 154 DLAFESSLLFESDFTLDDSE 173 >gi|297580957|ref|ZP_06942882.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae RC385] gi|297534783|gb|EFH73619.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae RC385] Length = 1208 Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 11/126 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + + L+ ++E ++ +D S A LL+ + TIH FC+ ++ Sbjct: 85 LHD-ARLAFARGASEDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRMLT 143 Query: 146 QFPLEA 151 Q E+ Sbjct: 144 QNAFES 149 >gi|124266334|ref|YP_001020338.1| ATP-dependent DNA helicase UvrD [Methylibium petroleiphilum PM1] gi|124259109|gb|ABM94103.1| ATP-dependent DNA helicase UvrD [Methylibium petroleiphilum PM1] Length = 788 Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 12 ETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 E L+ EQL A + P +A + A AGSGKT +L R+ L+ P+ ++ +T Sbjct: 14 EAAGLLRHLNPEQLAAVTLPAGNALILAGAGSGKTRVLTTRIAWLVQTGQVSPAGVMAVT 73 Query: 70 HTKAAAAEMSHRV 82 T AA EM R+ Sbjct: 74 FTNKAAKEMLTRL 86 >gi|163746115|ref|ZP_02153474.1| DNA helicase II, putative [Oceanibulbus indolifex HEL-45] gi|161380860|gb|EDQ05270.1| DNA helicase II, putative [Oceanibulbus indolifex HEL-45] Length = 805 Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AG+GKT L R++ LL A P+ +L +T T AA EM +RV +++ Sbjct: 50 AGAGTGKTRALTARIVHLLNTGRARPNEVLAVTFTNKAAREMKNRVGQML 99 >gi|150397238|ref|YP_001327705.1| UvrD/REP helicase [Sinorhizobium medicae WSM419] gi|150028753|gb|ABR60870.1| UvrD/REP helicase [Sinorhizobium medicae WSM419] Length = 850 Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65 ++ ++ D +S EQ A + V A AG+GKT +L R+ +L A PS + Sbjct: 35 RDKAQRPDYLSGLNPEQREAVEALEGPVLVLAGAGTGKTRVLTTRIAHILSTGRAFPSQI 94 Query: 66 LCLTHTKAAAAEMSHRV 82 L +T T AA EM R+ Sbjct: 95 LAVTFTNKAAREMKERI 111 >gi|77920551|ref|YP_358366.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380] gi|77546634|gb|ABA90196.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380] Length = 678 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 38/135 (28%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT ++ R+ LL PS +L +T T AA EM RV I+ Sbjct: 25 AGAGSGKTRVITSRIAFLLQDRGVPSQAILAVTFTNKAAREMRERVEGIV---------- 74 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 G+K K G+ + T HA C I+++ + + Sbjct: 75 ---------GRKQAK------------------GMVISTFHALCVRILKEDIEQLGYKKN 107 Query: 157 FAIADEEQSKKLIEE 171 F+I +LI + Sbjct: 108 FSIYGGADQLRLIRD 122 >gi|121726748|ref|ZP_01679966.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V52] gi|121630782|gb|EAX63166.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V52] Length = 1208 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 23/133 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + A D +L + + + +D + A LL++ + TIH F Sbjct: 85 LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137 Query: 140 CEAIMQQFPLEAN 152 C+ ++ Q E+ Sbjct: 138 CQRMLTQNAFESG 150 >gi|116747950|ref|YP_844637.1| UvrD/REP helicase [Syntrophobacter fumaroxidans MPOB] gi|116697014|gb|ABK16202.1| ATP-dependent DNA helicase, Rep family [Syntrophobacter fumaroxidans MPOB] Length = 620 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 27/59 (45%), Positives = 33/59 (55%), Gaps = 4/59 (6%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A V+A AGSGKT L ++ L+ N H P +L +T T AA EM R LE IT S Sbjct: 21 AIVTAGAGSGKTRTLTNKIA-YLVNNLHYDPERILAITFTNKAADEMKSR-LEKITGRS 77 >gi|224531711|ref|ZP_03672343.1| exodeoxyribonuclease V, beta subunit [Borrelia valaisiana VS116] gi|224511176|gb|EEF81582.1| exodeoxyribonuclease V, beta subunit [Borrelia valaisiana VS116] Length = 1169 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII 86 + A+AG+GKTH+L V+ L+ + + +L LT T+ A EM R+L+ I Sbjct: 16 IEASAGTGKTHVLENVVISLMQNKLYSINEILVLTFTRKATEEMHTRILKAI 67 >gi|158522126|ref|YP_001529996.1| UvrD/REP helicase [Desulfococcus oleovorans Hxd3] gi|158510952|gb|ABW67919.1| UvrD/REP helicase [Desulfococcus oleovorans Hxd3] Length = 616 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 A V+A AGSGKT L ++ L+ P +L +T T AA EM R++ + Sbjct: 20 ALVTAGAGSGKTRTLTAKIAHLISLGYPPERILAITFTNKAADEMKRRLVAL 71 >gi|238786418|ref|ZP_04630341.1| Helicase IV (75 kDa helicase) [Yersinia bercovieri ATCC 43970] gi|238712678|gb|EEQ04767.1| Helicase IV (75 kDa helicase) [Yersinia bercovieri ATCC 43970] Length = 684 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +LV R LL N A P +L L + AA EM+ R+ Sbjct: 214 VLAGAGSGKTSVLVARAAWLLRRNEARPEQILLLAFGRQAADEMNSRI 261 >gi|57237622|ref|YP_178870.1| putative ATP-dependent DNA helicase [Campylobacter jejuni RM1221] gi|86153455|ref|ZP_01071659.1| atp-dependent helicase [Campylobacter jejuni subsp. jejuni HB93-13] gi|57166426|gb|AAW35205.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni RM1221] gi|85843181|gb|EAQ60392.1| atp-dependent helicase [Campylobacter jejuni subsp. jejuni HB93-13] gi|315058231|gb|ADT72560.1| ATP-dependent DNA helicase UvrD/PcrA/Rep, epsilon proteobacterial type 1 [Campylobacter jejuni subsp. jejuni S3] Length = 676 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S+ +EQ LA+ V A+AG+GKT +V R+ LL P ++ LT T A+ Sbjct: 3 LSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNKAS 62 Query: 76 AEMSHRV 82 EM R+ Sbjct: 63 KEMIGRL 69 >gi|169831771|ref|YP_001717753.1| ATP-dependent DNA helicase PcrA [Candidatus Desulforudis audaxviator MP104C] gi|169638615|gb|ACA60121.1| ATP-dependent DNA helicase PcrA [Candidatus Desulforudis audaxviator MP104C] Length = 718 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 63/163 (38%), Gaps = 40/163 (24%) Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 +D +++ Q A P V A AGSGKT +L R+ L+ + P +L +T T Sbjct: 7 LDFLTELNPAQAEAVCHPGGPLLVLAGAGSGKTRVLTSRIAYLVRVHRVEPHRILAITFT 66 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ H D+ L Sbjct: 67 NRAAREMKERVASLV---PHAVDD-----------------------------------L 88 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 V T HA C I+++ + + +F I DE + +I++ K Sbjct: 89 WVMTFHAACLRILRREIEKLGYSKNFVIYDEADQQTVIKDCLK 131 >gi|159045024|ref|YP_001533818.1| DNA helicase II [Dinoroseobacter shibae DFL 12] gi|157912784|gb|ABV94217.1| DNA helicase II [Dinoroseobacter shibae DFL 12] Length = 807 Score = 40.0 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AG+GKT L R+ LLL A P+ +L +T T AA EM RV ++ Sbjct: 61 AGAGTGKTKALTCRIAHLLLTGTARPNEILAVTFTNKAAREMKERVATLM 110 >gi|53713817|ref|YP_099809.1| ATP-dependent DNA helicase [Bacteroides fragilis YCH46] gi|52216682|dbj|BAD49275.1| ATP-dependent DNA helicase [Bacteroides fragilis YCH46] Length = 786 Score = 40.0 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L ++ LL +P +L LT T AA EM R+ Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNKAAREMKERI 71 >gi|83858903|ref|ZP_00952425.1| DNA helicase II [Oceanicaulis alexandrii HTCC2633] gi|83853726|gb|EAP91578.1| DNA helicase II [Oceanicaulis alexandrii HTCC2633] Length = 766 Score = 40.0 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A P +L +T T AA EM RV +II Sbjct: 42 VLAGAGTGKTRVLTTRLAHILATGKAQPWNILAVTFTNKAAREMKERVGKII 93 >gi|239908036|ref|YP_002954777.1| UvrD/REP helicase family protein [Desulfovibrio magneticus RS-1] gi|239797902|dbj|BAH76891.1| UvrD/REP helicase family protein [Desulfovibrio magneticus RS-1] Length = 1060 Score = 40.0 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 42/141 (29%), Positives = 58/141 (41%), Gaps = 36/141 (25%) Query: 36 VSANAGSGKTHILVQRVLRLLL----------------ANAHPSTLLCLTHTKAAAAEMS 79 V A+AGSGKTH L R + L+L A A P +L +T T AAAEM Sbjct: 5 VKASAGSGKTHALTGRFIDLVLGASRDLPRACGDASDGAYAVPD-ILAVTFTNKAAAEMR 63 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK---ARHLLITILETPGGLKVQTI 136 RV+E + K PN + K AR L ++L L ++TI Sbjct: 64 DRVIEAL----------------KRLALDPNPAQPGKRATARRELESLLVHAQRLGIRTI 107 Query: 137 HAFCEAIMQQFPLEANITSHF 157 + + + F LE + F Sbjct: 108 DSLLYLLARVFALELGLRPDF 128 >gi|258651813|ref|YP_003200969.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233] gi|258555038|gb|ACV77980.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233] Length = 685 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTK 72 +D + + +LA P+ V A AG+GKT + R+ L+ AHP S +L +T T Sbjct: 4 LDGLDDGQRAAVLA--PSGPVCVLAGAGTGKTRTITHRIAHLVATGAHPASEVLAVTFTT 61 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 62 RAAGEMRLRL 71 >gi|220913223|ref|YP_002488532.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6] gi|219860101|gb|ACL40443.1| UvrD/REP helicase [Arthrobacter chlorophenolicus A6] Length = 1167 Score = 40.0 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 20/154 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77 T + + S P V A AGSGKT + RV+ L+AN P +L +T T+ AA E Sbjct: 44 TAEQSAIISSPLTPRLVIAGAGSGKTATMADRVV-WLVANGWVRPEEVLGVTFTRKAAGE 102 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 ++ R+ + A ++ + + M A + LE KV T H Sbjct: 103 LASRIRAKLVALQRVA-------------ARGAGAPMFPAGMISSDALEP----KVSTYH 145 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 +F I+ + L + + Q+ +L E Sbjct: 146 SFASGIVSDYGLRLGVERDVVLLGGAQAWQLATE 179 >gi|218886850|ref|YP_002436171.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757804|gb|ACL08703.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1244 Score = 40.0 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 LA+ P + V A G+GKT LV RVL L+ +L +T T+ AAAEM R+ Sbjct: 568 LAAGP-QPVLVLAGPGTGKTRTLVGRVLHLVETGIDARRILAVTFTRRAAAEMDERL 623 >gi|167582406|ref|ZP_02375280.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis TXDOH] Length = 927 Score = 40.0 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P ++ + R L + + TIHAFC+ Sbjct: 87 TGDDGGDPFVARLFETTLAPGRGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|86150141|ref|ZP_01068368.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152070|ref|ZP_01070282.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp. jejuni 260.94] gi|88597504|ref|ZP_01100738.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp. jejuni 84-25] gi|218562405|ref|YP_002344184.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315124301|ref|YP_004066305.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85839257|gb|EAQ56519.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp. jejuni CF93-6] gi|85840855|gb|EAQ58105.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp. jejuni 260.94] gi|88190096|gb|EAQ94071.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp. jejuni 84-25] gi|112360111|emb|CAL34905.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926023|gb|ADC28375.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni IA3902] gi|315018023|gb|ADT66116.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315928295|gb|EFV07611.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 676 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S+ +EQ LA+ V A+AG+GKT +V R+ LL P ++ LT T A+ Sbjct: 3 LSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNKAS 62 Query: 76 AEMSHRV 82 EM R+ Sbjct: 63 KEMIGRL 69 >gi|331266377|ref|YP_004326007.1| exonuclease RexA, RecB, ATP-dependent exoDNAse,beta subunit (contains helicase and exonuclease domains) [Streptococcus oralis Uo5] gi|326683049|emb|CBZ00666.1| exonuclease RexA, RecB, ATP-dependent exoDNAse,beta subunit (contains helicase and exonuclease domains) [Streptococcus oralis Uo5] Length = 1217 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ S++ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISQQIQESND 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|297566348|ref|YP_003685320.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946] gi|296850797|gb|ADH63812.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946] Length = 726 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 A V A AGSGKT +V R+ LL + + +L +T T AA EM R+ +++ +H Sbjct: 29 PALVVAGAGSGKTRTVVHRIAYLLREHRVYAGEILAVTFTNKAAGEMKERLGKMVGRAAH 88 >gi|90407538|ref|ZP_01215720.1| superfamily I DNA and RNA helicase [Psychromonas sp. CNPT3] gi|90311348|gb|EAS39451.1| superfamily I DNA and RNA helicase [Psychromonas sp. CNPT3] Length = 969 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 12/118 (10%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII-------TAW 89 A AG+GKT ++V R LL + A S +L L + +AAA EM R+++ + T + Sbjct: 207 AGAGTGKTSVMVGRAGYLLNSLQAQHSDVLLLAYGRAAADEMDARIVDKLRTDKISATTF 266 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 L I I +++G KP S + ++T + A+C I++ F Sbjct: 267 HSLGQSI----IAQVEGAKPCLSIFAGDEKAKAKWIQTYFEGLIYNNEAYCSLILEYF 320 >gi|116617682|ref|YP_818053.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096529|gb|ABJ61680.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 766 Score = 40.0 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ N +P +L +T T AA EM R+ +++ Sbjct: 44 IMAGAGSGKTRVLTHRIAHLVQDKNVYPWRILAITFTNKAAREMRERIAQLV 95 >gi|301163499|emb|CBW23050.1| putative helicase [Bacteroides fragilis 638R] Length = 786 Score = 40.0 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L ++ LL +P +L LT T AA EM R+ Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNKAAREMKERI 71 >gi|298492943|ref|YP_003723120.1| ATP-dependent DNA helicase PcrA ['Nostoc azollae' 0708] gi|298234861|gb|ADI65997.1| ATP-dependent DNA helicase PcrA ['Nostoc azollae' 0708] Length = 776 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 V A AGSGKT L R+ L+L + +P ++ +T T AA EM R+ + + Sbjct: 28 VVAGAGSGKTRALTYRIANLILKHRVNPENIIAVTFTNKAAREMKDRIQRLFS 80 >gi|257139612|ref|ZP_05587874.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis E264] Length = 1272 Score = 40.0 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P ++ + R L + + TIHAFC+ Sbjct: 87 TGDDGGDPFVARLFETTLAPGRGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|167620501|ref|ZP_02389132.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis Bt4] Length = 1253 Score = 40.0 bits (92), Expect = 0.30, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P ++ + R L + + TIHAFC+ Sbjct: 87 TGDDGGDPFVARLFETTLAPGRGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|108803668|ref|YP_643605.1| ATP-dependent DNA helicase PcrA [Rubrobacter xylanophilus DSM 9941] gi|108764911|gb|ABG03793.1| ATP-dependent DNA helicase PcrA [Rubrobacter xylanophilus DSM 9941] Length = 694 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L R+ LL A P +L +T T AA EM RV Sbjct: 10 VLAGAGSGKTRVLTHRIAYLLERGLAAPDEVLAITFTNKAADEMKERV 57 >gi|283957241|ref|ZP_06374702.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni 1336] gi|283791253|gb|EFC30061.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni 1336] Length = 676 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S+ +EQ LA+ V A+AG+GKT +V R+ LL P ++ LT T A+ Sbjct: 3 LSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNKAS 62 Query: 76 AEMSHRV 82 EM R+ Sbjct: 63 KEMIGRL 69 >gi|255009480|ref|ZP_05281606.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12] gi|313147251|ref|ZP_07809444.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12] gi|313136018|gb|EFR53378.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12] Length = 786 Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L ++ LL +P +L LT T AA EM R+ Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNKAAREMKERI 71 >gi|253565788|ref|ZP_04843243.1| ATP-dependent DNA helicase [Bacteroides sp. 3_2_5] gi|251946067|gb|EES86474.1| ATP-dependent DNA helicase [Bacteroides sp. 3_2_5] Length = 786 Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L ++ LL +P +L LT T AA EM R+ Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNKAAREMKERI 71 >gi|229823253|ref|ZP_04449322.1| hypothetical protein GCWU000282_00551 [Catonella morbi ATCC 51271] gi|229787419|gb|EEP23533.1| hypothetical protein GCWU000282_00551 [Catonella morbi ATCC 51271] Length = 798 Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 ++A AGSGKT +L R+ L+ +P +L +T T AAAEM RV ++ Sbjct: 33 IAAGAGSGKTRVLTHRIAYLIQERQVNPWNILAITFTNKAAAEMRERVQRLV 84 >gi|83720729|ref|YP_443363.1| exodeoxyribonuclease V subunit beta [Burkholderia thailandensis E264] gi|83654554|gb|ABC38617.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis E264] Length = 1321 Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 76 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 135 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P ++ + R L + + TIHAFC+ Sbjct: 136 TGDDGGDPFVARLFETTLAPGRGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 190 Query: 144 MQQ 146 +Q+ Sbjct: 191 LQE 193 >gi|60682035|ref|YP_212179.1| putative helicase [Bacteroides fragilis NCTC 9343] gi|60493469|emb|CAH08255.1| putative helicase [Bacteroides fragilis NCTC 9343] Length = 786 Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L ++ LL +P +L LT T AA EM R+ Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNKAAREMKERI 71 >gi|301165556|emb|CBW25127.1| ATP-dependent DNA helicase [Bacteriovorax marinus SJ] Length = 752 Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT LV R+ LL + P +L LT + AA EM R+ ++ A Sbjct: 26 ILAGAGSGKTKTLVTRISYLLEELHVSPYQVLALTFSNKAAREMRDRIGSMVEA------ 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G L++ T HAFC I++ ++ Sbjct: 80 --------------------------------DVGALQITTFHAFCARILRSEANYLGLS 107 Query: 155 SHFAIADEEQSKKLIE 170 +F I D + K +++ Sbjct: 108 RNFTIYDTSEQKAVVK 123 >gi|301299732|ref|ZP_07205982.1| ATP-dependent DNA helicase PcrA [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852663|gb|EFK80297.1| ATP-dependent DNA helicase PcrA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 744 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT +L RV L+ +P +L +T T AA EM RV Sbjct: 27 IMAGAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTNKAAREMRERV 74 >gi|225870333|ref|YP_002746280.1| ATP-dependent exonuclease subunit A [Streptococcus equi subsp. equi 4047] gi|225699737|emb|CAW93495.1| putative ATP-dependent exonuclease subunit A [Streptococcus equi subsp. equi 4047] Length = 1213 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 21/136 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII-TAWSHLSD 94 VSA+AGSGKT ++V+R+L +L L T T AA E+ R+ + + TA + D Sbjct: 46 VSASAGSGKTFVMVERILDKILRGIPVDCLFISTFTVKAATELIERIEKKLHTAIAETQD 105 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 L A + Q + +++D+ T+ AF + ++ Q I+ Sbjct: 106 YQLKAYLND-QLQALSQADIG-------------------TMDAFAQKLVHQHGYVLGIS 145 Query: 155 SHFAIADEEQSKKLIE 170 HF I ++ + +++ Sbjct: 146 PHFRIIQDKAEQDILK 161 >gi|148926945|ref|ZP_01810622.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni CG8486] gi|145845029|gb|EDK22126.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp. jejuni CG8486] Length = 676 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S+ +EQ LA+ V A+AG+GKT +V R+ LL P ++ LT T A+ Sbjct: 3 LSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNKAS 62 Query: 76 AEMSHRV 82 EM R+ Sbjct: 63 KEMIGRL 69 >gi|153951004|ref|YP_001398295.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp. doylei 269.97] gi|152938450|gb|ABS43191.1| putative ATP-dependent DNA helicase [Campylobacter jejuni subsp. doylei 269.97] Length = 676 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S+ +EQ LA+ V A+AG+GKT +V R+ LL P ++ LT T A+ Sbjct: 3 LSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVTPQKIMLLTFTNKAS 62 Query: 76 AEMSHRV 82 EM R+ Sbjct: 63 KEMIGRL 69 >gi|90023404|ref|YP_529231.1| DNA-dependent helicase II [Saccharophagus degradans 2-40] gi|89953004|gb|ABD83019.1| ATP-dependent DNA helicase UvrD [Saccharophagus degradans 2-40] Length = 724 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLT 69 S +D +++ + E + S P + V A AGSGKT +LV R+ + + P ++ +T Sbjct: 4 SYLLDGLNEPQREAV--SAPLGNILVLAGAGSGKTRVLVHRIAWHIQVEGLSPHQIMAVT 61 Query: 70 HTKAAAAEMSHRVLEII 86 T AA EM R+ EI+ Sbjct: 62 FTNKAAREMRSRLDEIM 78 >gi|329890022|ref|ZP_08268365.1| DNA helicase II [Brevundimonas diminuta ATCC 11568] gi|328845323|gb|EGF94887.1| DNA helicase II [Brevundimonas diminuta ATCC 11568] Length = 778 Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 D +S EQ A + T V A AG+GKT +L R+ +L A P LL +T T Sbjct: 24 DYLSGLNPEQREAVETTEGPVLVLAGAGTGKTRVLTTRLAHILATGRAKPWELLVVTFTN 83 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 84 KAAREMRERIGHLI 97 >gi|289450713|ref|YP_003474825.1| UvrD/REP helicase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185260|gb|ADC91685.1| UvrD/REP helicase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 849 Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 10/80 (12%) Query: 17 ISQTKSEQLLA-SDPTRSA--------WVSANAGSGKTHILVQRVLRLL-LANAHPSTLL 66 I+Q K++ L ++P + A + A AGSGKT ++ R+ L+ N S++L Sbjct: 33 IAQNKTDLLAGLNEPQKKAVLHKDGPLLILAGAGSGKTKVITHRIAYLVEHENVPASSIL 92 Query: 67 CLTHTKAAAAEMSHRVLEII 86 +T T AA EM R++++I Sbjct: 93 AITFTNKAAQEMRQRIIKLI 112 >gi|260911425|ref|ZP_05918016.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 472 str. F0295] gi|260634472|gb|EEX52571.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 472 str. F0295] Length = 823 Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 ++ +++++ E ++ +D + V A AGSGKT +L ++ LL P +L LT T Sbjct: 5 LEKLNESQREAVVYTDGPQ--LVIAGAGSGKTRVLTFKIAHLLQLGLKPWNILALTFTNK 62 Query: 74 AAAEMSHRVLEII 86 AA EM R+ +++ Sbjct: 63 AANEMKARIGDLV 75 >gi|256419942|ref|YP_003120595.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588] gi|256034850|gb|ACU58394.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588] Length = 1066 Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLL-ANAHP 62 + +Q+H ++ + +Q A D T V A G+GKT IL R+ ++L + P Sbjct: 4 DQYQQHFR--EMYDRLNRQQRQAVDQTDGPVMVIAGPGTGKTQILASRIGKILQDTDYQP 61 Query: 63 STLLCLTHTKAAAAEMSHRVLEII 86 +LCLT+T A M R+ I Sbjct: 62 QNILCLTYTDAGTVAMRKRLTGFI 85 >gi|224823759|ref|ZP_03696868.1| UvrD/REP helicase [Lutiella nitroferrum 2002] gi|224604214|gb|EEG10388.1| UvrD/REP helicase [Lutiella nitroferrum 2002] Length = 586 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 18/150 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLA---NAHPSTL---LCLTHTKAAAAE----MSHRVLEI 85 + A+AG+GKT + RLLL A P ++ L +T+TKAA AE + HR+ E+ Sbjct: 19 IEASAGTGKTWTIAALYTRLLLEERDGAPPPSIEQILVVTYTKAATAELRERLRHRLAEL 78 Query: 86 --ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + D L A + +P ++ AR L + + TIH FC+ + Sbjct: 79 AAVLDGTPTRDGFLLAMAQRF--AEPAAREL--ARQRLTAAITGFDAAAIYTIHGFCQRV 134 Query: 144 MQQFPLEAN--ITSHFAIADEEQSKKLIEE 171 + E+ T+ D E+ +++++ Sbjct: 135 LTDAAFESGQTFTAELIADDAERLTEVVDD 164 >gi|126667776|ref|ZP_01738743.1| ATP-dependent DNA helicase [Marinobacter sp. ELB17] gi|126627724|gb|EAZ98354.1| ATP-dependent DNA helicase [Marinobacter sp. ELB17] Length = 698 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 35/68 (51%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T+ + +AS V A AGSGKT LV R RL+ + P +L T ++ AA Sbjct: 7 IPLTEQQNAIASHKDGPMIVLAGAGSGKTATLVARTGRLIDQHISPRNILITTFSRKAAT 66 Query: 77 EMSHRVLE 84 E+ R+ E Sbjct: 67 EIKKRLSE 74 >gi|109900377|ref|YP_663632.1| DNA helicase II [Pseudoalteromonas atlantica T6c] gi|109702658|gb|ABG42578.1| DNA helicase II [Pseudoalteromonas atlantica T6c] Length = 724 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ Q +Q A + P + A AGSGKT +LV R+ L+ + P +L +T T Sbjct: 6 LLEQLNDKQRDAVASPAADMLILAGAGSGKTRVLVHRIAWLMEVEGIAPWGILAVTFTNK 65 Query: 74 AAAEMSHRVLEI 85 AA EM R+ E+ Sbjct: 66 AAREMRGRIEEL 77 >gi|302385714|ref|YP_003821536.1| UvrD/REP helicase [Clostridium saccharolyticum WM1] gi|302196342|gb|ADL03913.1| UvrD/REP helicase [Clostridium saccharolyticum WM1] Length = 614 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A GSGKT + R+ L+ PS +L +T TKAAA EM R ++ Sbjct: 24 VLAGPGSGKTFTITHRICHLIKEYGVDPSNILVITFTKAAAREMKERFESLVDG 77 >gi|262191393|ref|ZP_06049582.1| exodeoxyribonuclease V beta chain [Vibrio cholerae CT 5369-93] gi|262032724|gb|EEY51273.1| exodeoxyribonuclease V beta chain [Vibrio cholerae CT 5369-93] Length = 1208 Score = 39.7 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 23/132 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTYTIAGLYLRLVLGHGCVETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + A D +L + + + +D S A LL+ + TIH F Sbjct: 85 LHDARLAFARGASDDPLLRSLLAEF-------TDHSLAVSLLLNAERQMDEAAIFTIHGF 137 Query: 140 CEAIMQQFPLEA 151 C+ ++ Q E+ Sbjct: 138 CQRMLTQNAFES 149 >gi|241763721|ref|ZP_04761769.1| UvrD/REP helicase [Acidovorax delafieldii 2AN] gi|241367026|gb|EER61411.1| UvrD/REP helicase [Acidovorax delafieldii 2AN] Length = 821 Score = 39.7 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Query: 23 EQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSH 80 EQL A + P A + A AGSGKT +L R+ LL A P +L +T T AA EM Sbjct: 35 EQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQNGYATPGGILAVTFTNKAAKEMVA 94 Query: 81 RV 82 R+ Sbjct: 95 RL 96 >gi|163802370|ref|ZP_02196264.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio sp. AND4] gi|159173899|gb|EDP58713.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio sp. AND4] Length = 1212 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 23/133 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT + LRLLL + T +L +T T+AA AE+ R+ Sbjct: 23 IEASAGTGKTFTIAGLYLRLLLGHGTTDTKHRVPLTVDQILVVTFTEAATAELRDRIRAR 82 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 I + D ++ + +I D +A +L+ V TIH F Sbjct: 83 IHDARIAFSRGQSLDPVIQPLLVEI-------DDHKQATEILLQAERQMDEAAVYTIHGF 135 Query: 140 CEAIMQQFPLEAN 152 C+ ++ Q E+ Sbjct: 136 CQRMLTQNAFESG 148 >gi|328541555|ref|YP_004301665.1| UvrD/REP helicase [Polymorphum gilvum SL003B-26A1] gi|326415759|gb|ADZ72821.1| UvrD/REP helicase [Polymorphum gilvum SL003B-26A1] Length = 426 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 25/45 (55%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A G+GKT LV RV LL P +L LT + AA EM+ R+ Sbjct: 216 AGPGTGKTQTLVARVEGLLADGVDPRRILLLTFSNKAAGEMAERI 260 >gi|153801076|ref|ZP_01955662.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-3] gi|124123430|gb|EAY42173.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-3] Length = 1208 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 23/133 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + A D +L + + + +D + A LL++ + TIH F Sbjct: 85 LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137 Query: 140 CEAIMQQFPLEAN 152 C+ ++ Q E+ Sbjct: 138 CQRMLTQNAFESG 150 >gi|300214971|gb|ADJ79387.1| ATP-dependent DNA helicase [Lactobacillus salivarius CECT 5713] Length = 744 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT +L RV L+ +P +L +T T AA EM RV Sbjct: 27 IMAGAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTNKAAREMRERV 74 >gi|118471354|ref|YP_889771.1| ATP-dependent DNA helicase PcrA [Mycobacterium smegmatis str. MC2 155] gi|118172641|gb|ABK73537.1| ATP-dependent DNA helicase PcrA [Mycobacterium smegmatis str. MC2 155] Length = 783 Score = 39.7 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 40/136 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L +R+ LL +L +T T AAAEM RV++++ Sbjct: 37 IVAGAGSGKTAVLTRRIAYLLAEREVGVGQVLAITFTNKAAAEMRERVVQLV-------- 88 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ-QFPLEANI 153 +KA + V T H+ C I++ Q L + Sbjct: 89 -----------------GPRAKA-------------MWVSTFHSTCVRILRNQASLLPGL 118 Query: 154 TSHFAIADEEQSKKLI 169 S+F+I D + S++L+ Sbjct: 119 NSNFSIYDSDDSRRLL 134 >gi|86358422|ref|YP_470314.1| DNA helicase II protein [Rhizobium etli CFN 42] gi|86282524|gb|ABC91587.1| DNA helicase II protein [Rhizobium etli CFN 42] Length = 808 Score = 39.7 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AG+GKT +L R+ +L A PS +L +T T AA EM R+ Sbjct: 58 VLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTNKAAREMKERI 105 >gi|147674146|ref|YP_001217828.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O395] gi|262168313|ref|ZP_06036010.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC27] gi|146316029|gb|ABQ20568.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O395] gi|227014216|gb|ACP10426.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O395] gi|262023205|gb|EEY41909.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC27] Length = 1208 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 23/133 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + A D +L + + + +D + A LL++ + TIH F Sbjct: 85 LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137 Query: 140 CEAIMQQFPLEAN 152 C+ ++ Q E+ Sbjct: 138 CQRMLTQNAFESG 150 >gi|332171921|gb|AEE21175.1| DNA helicase II [Glaciecola agarilytica 4H-3-7+YE-5] Length = 724 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ Q +Q A + P + A AGSGKT +LV R+ L+ + P +L +T T Sbjct: 6 LLEQLNDKQRDAVASPAADMLILAGAGSGKTRVLVHRIAWLMEVEGIAPWGILAVTFTNK 65 Query: 74 AAAEMSHRVLEI 85 AA EM R+ E+ Sbjct: 66 AAREMRGRIEEL 77 >gi|320108905|ref|YP_004184495.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4] gi|319927426|gb|ADV84501.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4] Length = 1126 Score = 39.7 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 31/60 (51%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 ++L A + + A G+GKT LV RV LL P +L LT + AA+EM R+ Sbjct: 201 QELAAKHRGEAYLLEAGPGTGKTRTLVARVEGLLADGVDPRRILVLTFSNKAASEMGERI 260 >gi|296393904|ref|YP_003658788.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985] gi|296181051|gb|ADG97957.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985] Length = 789 Score = 39.7 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT ++ +RV LL +A P +L +T T AA E+ RV Sbjct: 28 IIAGAGSGKTSVITRRVAWLLAEGHARPGEILAITFTNKAAGELKERV 75 >gi|227432451|ref|ZP_03914438.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351772|gb|EEJ42011.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 749 Score = 39.7 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ N +P +L +T T AA EM R+ +++ Sbjct: 27 IMAGAGSGKTRVLTHRIAHLVQDKNVYPWRILAITFTNKAAREMRERIAQLV 78 >gi|291288294|ref|YP_003505110.1| UvrD/REP helicase [Denitrovibrio acetiphilus DSM 12809] gi|290885454|gb|ADD69154.1| UvrD/REP helicase [Denitrovibrio acetiphilus DSM 12809] Length = 703 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT ++ R+ L+ PS +L +T T AA EM R+L+++ Sbjct: 25 VLAGAGTGKTRVITYRIAHLINNMRVPSRNILAVTFTNKAAGEMKERILKLV 76 >gi|116253019|ref|YP_768857.1| ATP-dependent DNA helicase [Rhizobium leguminosarum bv. viciae 3841] gi|115257667|emb|CAK08764.1| putative ATP-dependent DNA helicase [Rhizobium leguminosarum bv. viciae 3841] Length = 829 Score = 39.7 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AG+GKT +L R+ +L A PS +L +T T AA EM R+ Sbjct: 79 VLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTNKAAREMKERI 126 >gi|78223100|ref|YP_384847.1| DNA helicase/exodeoxyribonuclease V subunit beta [Geobacter metallireducens GS-15] gi|78194355|gb|ABB32122.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Geobacter metallireducens GS-15] Length = 1200 Score = 39.7 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 10/123 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI------ITA 88 + A+AG+GKT+ + LRL++ P +L +T T+AA E+ R+ E + A Sbjct: 17 IEASAGTGKTYAIACLYLRLVVERGLKPEEILVVTFTEAATKELRSRIRERLREARDVFA 76 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + +D+ L + + P + + L + + + TIH FC +Q+ Sbjct: 77 GAGTTDDFLLKMGDTNRKEWPGTEEALRRLDLALRTFDCAA---ISTIHGFCSRALQENA 133 Query: 149 LEA 151 E+ Sbjct: 134 FES 136 >gi|255067628|ref|ZP_05319483.1| exodeoxyribonuclease V, beta subunit [Neisseria sicca ATCC 29256] gi|255048102|gb|EET43566.1| exodeoxyribonuclease V, beta subunit [Neisseria sicca ATCC 29256] Length = 1213 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 28/146 (19%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV----------LE 84 + A+AG+GKT+ + RL++ P ++L +T TKAA AE+ R+ LE Sbjct: 23 IEASAGTGKTYGIAALFTRLVVLEQMPVESILTVTFTKAATAELKTRLRARLDEVLHALE 82 Query: 85 IITAWSHLSDEILSAEITKIQGK-------KPNKSDMSKARHLLITILETPGGLK---VQ 134 + +LSD++ + G K + S+AR L++ + G + Sbjct: 83 SVEDTDNLSDDLEAYCRDNHPGDVFLTGLLKQALAQESRAR-LIVRLKAAIGQFDNAAIY 141 Query: 135 TIHAFCEAIMQQF------PLEANIT 154 TIH FC+ I++ + P++ +T Sbjct: 142 TIHGFCQRILRDYAFLCHAPMDVELT 167 >gi|34557966|ref|NP_907781.1| ATP-dependent helicase [Wolinella succinogenes DSM 1740] gi|34483684|emb|CAE10681.1| ATP-DEPENDENT HELICASE [Wolinella succinogenes] Length = 675 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 35/69 (50%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + L S +Q +S P + A+AG+GKT +V R+ L+ P +L LT T Sbjct: 1 MPLSSLNAEQQAASSAPLGHNLIIASAGTGKTSTIVGRIAHLMHQGITPQEILLLTFTNK 60 Query: 74 AAAEMSHRV 82 AA EM R+ Sbjct: 61 AANEMISRL 69 >gi|84501742|ref|ZP_00999914.1| Putative uvrD/DNA Helicase II [Oceanicola batsensis HTCC2597] gi|84390363|gb|EAQ02922.1| Putative uvrD/DNA Helicase II [Oceanicola batsensis HTCC2597] Length = 862 Score = 39.7 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ LL A A P+ +L +T T AA EM RV Sbjct: 50 AGAGTGKTKALTARIVHLLSTARAAPNEILAVTFTNKAAKEMKARV 95 >gi|222823786|ref|YP_002575360.1| ATP-dependent DNA helicase [Campylobacter lari RM2100] gi|222539008|gb|ACM64109.1| ATP-dependent DNA helicase [Campylobacter lari RM2100] Length = 675 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 17 ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S+ EQ A+ P + A+AG+GKT +V R+ LL +P ++ LT T A+ Sbjct: 3 LSRLNEEQYKAACAPFGHNLIIASAGTGKTSTIVARIAFLLQNGTNPEKIMLLTFTNKAS 62 Query: 76 AEMSHRV 82 EM R+ Sbjct: 63 KEMIERL 69 >gi|261822106|ref|YP_003260212.1| DNA helicase IV [Pectobacterium wasabiae WPP163] gi|261606119|gb|ACX88605.1| UvrD/REP helicase [Pectobacterium wasabiae WPP163] Length = 685 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 18/101 (17%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R L+ A P +L L + AA EM+ R+LE + +D Sbjct: 214 VLAGAGSGKTSVLVARAAWLMHRQEAAPDQILLLAFGRKAAEEMNERILERLN-----TD 268 Query: 95 EILSAE--------ITKIQGKKPN----KSDMSKARHLLIT 123 EI + I + K P +SD + R LLI+ Sbjct: 269 EIQAKTFHALALHIIQQASRKAPMISQLESDAKQRRELLIS 309 >gi|253680774|ref|ZP_04861577.1| helicase, UvrD/Rep family [Clostridium botulinum D str. 1873] gi|253562623|gb|EES92069.1| helicase, UvrD/Rep family [Clostridium botulinum D str. 1873] Length = 761 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHT 71 +DL S EQ A+ V A AGSGKT +L R+ ++ P +L +T T Sbjct: 1 MDLKSLLNKEQYKAATAIEGPVLVLAGAGSGKTRVLTYRIAHMIEDLGIPQYNILAITFT 60 Query: 72 KAAAAEMSHRVLEIIT 87 AA EM R+ ++++ Sbjct: 61 NKAAGEMKDRIKKLVS 76 >gi|134283868|ref|ZP_01770565.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 305] gi|134244856|gb|EBA44953.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 305] Length = 1270 Score = 39.7 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P ++ + R L + + TIHAFC+ Sbjct: 87 TGDDGGDPFIARLFETTLAPERGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|90962321|ref|YP_536237.1| ATP-dependent DNA helicase [Lactobacillus salivarius UCC118] gi|90821515|gb|ABE00154.1| ATP-dependent DNA helicase [Lactobacillus salivarius UCC118] Length = 744 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT +L RV L+ +P +L +T T AA EM RV Sbjct: 27 IMAGAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTNKAAREMRERV 74 >gi|126455228|ref|YP_001065663.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 1106a] gi|242316641|ref|ZP_04815657.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 1106b] gi|126228870|gb|ABN92410.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 1106a] gi|242139880|gb|EES26282.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 1106b] Length = 1270 Score = 39.7 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P ++ + R L + + TIHAFC+ Sbjct: 87 TGDDGGDPFIARLFETTLAPERGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|254197985|ref|ZP_04904407.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei S13] gi|169654726|gb|EDS87419.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei S13] Length = 1270 Score = 39.7 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P ++ + R L + + TIHAFC+ Sbjct: 87 TGDDGGDPFIARLFETTLAPERGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|254180283|ref|ZP_04886882.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 1655] gi|184210823|gb|EDU07866.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 1655] Length = 1270 Score = 39.7 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P ++ + R L + + TIHAFC+ Sbjct: 87 TGDDGGDPFIARLFETTLAPERGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|323693634|ref|ZP_08107834.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14673] gi|323502325|gb|EGB18187.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14673] Length = 813 Score = 39.7 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ +P ++ +T T AAAEM RV +I+ Sbjct: 24 VLAGAGSGKTRVLTHRIAYLIEEKQVNPWNIMAITFTNKAAAEMRERVDKIV 75 >gi|322514244|ref|ZP_08067305.1| exodeoxyribonuclease V beta subunit [Actinobacillus ureae ATCC 25976] gi|322119856|gb|EFX91870.1| exodeoxyribonuclease V beta subunit [Actinobacillus ureae ATCC 25976] Length = 1202 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 8/129 (6%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLA-NAHPST---LLCLTHTKAAAAEMSHRVLEIITA 88 +A + A+AG+GKT + LRLLL P T +L +T TKAA E+ R+ + I A Sbjct: 14 TALIEASAGTGKTFTMANLYLRLLLGIGCAPLTVEQILVVTFTKAATEELRDRIRKNIKA 73 Query: 89 WSHLSDEI---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGL-KVQTIHAFCEAIM 144 E S + + + + + L + I E L + TIH+FC+ ++ Sbjct: 74 CCTFLQEYDAEKSYDANDFFFQLGQQIESVEEAILRLRIAEREIDLASIFTIHSFCQKML 133 Query: 145 QQFPLEANI 153 QF ++ + Sbjct: 134 FQFAFDSGM 142 >gi|296876208|ref|ZP_06900262.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis ATCC 15912] gi|296432919|gb|EFH18712.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis ATCC 15912] Length = 1221 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 40/186 (21%), Positives = 69/186 (37%), Gaps = 33/186 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++VQR+L + L T T AA E+ R Sbjct: 45 VSASAGSGKTFVMVQRILDQMQRGISIKELFISTFTVKAAGELKER-------------- 90 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 L +E+ GK SD + + L + + T+ +F + ++ ++ + Sbjct: 91 -LESEL----GKALQASDDPELKQHLARQIADVATSDIGTMDSFTQKVLTRYGYLLGLAP 145 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215 F I ++L++ NE + F + N E ++ + R Sbjct: 146 QFRILQNASEQRLLQ--------------NEVFQAVFDRYYQGENQEAFVQMVKNFTGQR 191 Query: 216 TALKLI 221 L L Sbjct: 192 KNLTLF 197 >gi|294787676|ref|ZP_06752920.1| DNA helicase II [Simonsiella muelleri ATCC 29453] gi|294483969|gb|EFG31652.1| DNA helicase II [Simonsiella muelleri ATCC 29453] Length = 735 Score = 39.7 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 5/74 (6%) Query: 13 TIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS--TLLCL 68 T DL+ +Q A +P SA + A AGSGKT +L R+ LL N H ++ + Sbjct: 7 TPDLLRHLNPQQAQAVECNPKTSALILAGAGSGKTRVLTTRI-AWLLQNQHAGVHNIMAV 65 Query: 69 THTKAAAAEMSHRV 82 T T AA EM R+ Sbjct: 66 TFTNKAAKEMQTRL 79 >gi|282881333|ref|ZP_06290013.1| putative ATP-dependent DNA helicase PcrA [Prevotella timonensis CRIS 5C-B1] gi|281304809|gb|EFA96889.1| putative ATP-dependent DNA helicase PcrA [Prevotella timonensis CRIS 5C-B1] Length = 808 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L ++ + P +L LT T AA EM R+ +++ Sbjct: 25 VIAGAGSGKTRVLTYKIAYQIQQGMKPWNILALTFTNKAANEMKERIGQLV 75 >gi|255526474|ref|ZP_05393385.1| UvrD/REP helicase [Clostridium carboxidivorans P7] gi|296184847|ref|ZP_06853258.1| putative ATP-dependent DNA helicase PcrA [Clostridium carboxidivorans P7] gi|255509856|gb|EET86185.1| UvrD/REP helicase [Clostridium carboxidivorans P7] gi|296050629|gb|EFG90052.1| putative ATP-dependent DNA helicase PcrA [Clostridium carboxidivorans P7] Length = 754 Score = 39.7 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ ++ N +PS +L +T T AA EM RV ++ Sbjct: 24 ILAGAGSGKTRVLTYRIAHMINDLNIYPSKILAITFTNKAAGEMKDRVRSLV 75 >gi|254881794|ref|ZP_05254504.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319641188|ref|ZP_07995889.1| helicase [Bacteroides sp. 3_1_40A] gi|254834587|gb|EET14896.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317387162|gb|EFV68040.1| helicase [Bacteroides sp. 3_1_40A] Length = 796 Score = 39.7 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 57/149 (38%), Gaps = 42/149 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT +L ++ LL P ++L LT T AA EM R+ + Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLERGYTPWSILALTFTNKAAREMKERIARQVG-------- 76 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +AR+L + T H+ I++ TS Sbjct: 77 -------------------DQARYLWMG-----------TFHSIFSRILRCEAQAVGFTS 106 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDN 184 +F I D SK LI KS + + LD+ Sbjct: 107 NFTIYDSSDSKSLI----KSIVKEMQLDD 131 >gi|238917159|ref|YP_002930676.1| hypothetical protein EUBELI_01231 [Eubacterium eligens ATCC 27750] gi|238872519|gb|ACR72229.1| Hypothetical protein EUBELI_01231 [Eubacterium eligens ATCC 27750] Length = 621 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78 V A GSGKT +L RV L+ +PS +L +T TKAAA +M Sbjct: 23 VIAGPGSGKTTVLTHRVRYLIDRCGVNPSDILVITFTKAAAEQM 66 >gi|229521160|ref|ZP_04410580.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TM 11079-80] gi|229341692|gb|EEO06694.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TM 11079-80] Length = 1208 Score = 39.7 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 23/132 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + A D +L + + + +D S A LL+ + TIH F Sbjct: 85 LHDARLAFARGASDDPLLRSLLAEF-------TDHSLAVSLLLNAERQMDEAAIFTIHGF 137 Query: 140 CEAIMQQFPLEA 151 C+ ++ Q E+ Sbjct: 138 CQRMLTQNAFES 149 >gi|227892257|ref|ZP_04010062.1| ATP-dependent DNA helicase [Lactobacillus salivarius ATCC 11741] gi|227865898|gb|EEJ73319.1| ATP-dependent DNA helicase [Lactobacillus salivarius ATCC 11741] Length = 747 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT +L RV L+ +P +L +T T AA EM RV Sbjct: 30 IMAGAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTNKAAREMRERV 77 >gi|190892554|ref|YP_001979096.1| ATP-dependent DNA helicase II protein [Rhizobium etli CIAT 652] gi|190697833|gb|ACE91918.1| ATP-dependent DNA helicase II protein [Rhizobium etli CIAT 652] Length = 832 Score = 39.7 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AG+GKT +L R+ +L A PS +L +T T AA EM R+ Sbjct: 82 VLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTNKAAREMKERI 129 >gi|209550144|ref|YP_002282061.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535900|gb|ACI55835.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 825 Score = 39.7 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AG+GKT +L R+ +L A PS +L +T T AA EM R+ Sbjct: 75 VLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTNKAAREMKERI 122 >gi|116328207|ref|YP_797927.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330931|ref|YP_800649.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120951|gb|ABJ78994.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124620|gb|ABJ75891.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 730 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 T + A AGSGKT ++ R+ LL+ N + LT T AAAEM RV ++ Sbjct: 21 TGPVLILAGAGSGKTRVITHRIANLLV-NHGIDRICALTFTNKAAAEMVERVKNLV 75 >gi|315929648|gb|EFV08828.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp. jejuni 305] Length = 387 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S+ +EQ LA+ V A+AG+GKT +V R+ LL P ++ LT T A+ Sbjct: 3 LSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGVAPQKIMLLTFTNKAS 62 Query: 76 AEMSHRV 82 EM R+ Sbjct: 63 KEMIGRL 69 >gi|265764162|ref|ZP_06092730.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_16] gi|263256770|gb|EEZ28116.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_16] Length = 786 Score = 39.7 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L ++ LL +P +L LT T AA EM R+ Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNKAAREMKERI 71 >gi|227536350|ref|ZP_03966399.1| UvrD/REP helicase domain protein [Sphingobacterium spiritivorum ATCC 33300] gi|227243726|gb|EEI93741.1| UvrD/REP helicase domain protein [Sphingobacterium spiritivorum ATCC 33300] Length = 1075 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 5/129 (3%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AGSGKT L L LL + + +L +T T A EM R+L+++ ++ Sbjct: 10 LKASAGSGKTFSLAVHYLTLLFHHEYKYREILAVTFTNKATEEMKTRILDVLKGLANNDP 69 Query: 95 EILSAEITKIQGKK-PNKSDM---SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + ++ K P S++ +A+ + IL V TI F + +++ F E Sbjct: 70 SPGTDNYRQLLLKAYPQYSNIELQDRAQKIYRRILHDYSHFSVSTIDGFVQKVIRGFAFE 129 Query: 151 ANITSHFAI 159 + + +++ Sbjct: 130 LGLDAAYSL 138 >gi|317502698|ref|ZP_07960810.1| ATP-dependent DNA helicase PcrA [Prevotella salivae DSM 15606] gi|315666184|gb|EFV05739.1| ATP-dependent DNA helicase PcrA [Prevotella salivae DSM 15606] Length = 761 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 12/103 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII----TAWS 90 V A AGSGKT +L ++ L+ + P ++L LT T AA EM +R+ ++ T + Sbjct: 22 VIAGAGSGKTRVLTYKIAYLIDEKQYEPWSILALTFTNKAANEMRNRIARVVGQDRTRYL 81 Query: 91 HLS------DEILSAEITKIQ-GKKPNKSDMSKARHLLITILE 126 ++ IL E K+ K+ D S +R LL +I++ Sbjct: 82 YMGTFHSIFSRILRVEAEKLGYSKQFTIYDESDSRSLLKSIIK 124 >gi|309810384|ref|ZP_07704218.1| UvrD/REP helicase [Dermacoccus sp. Ellin185] gi|308435624|gb|EFP59422.1| UvrD/REP helicase [Dermacoccus sp. Ellin185] Length = 1176 Score = 39.7 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 9/92 (9%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCL 68 ++ ++ T + + P V A AGSGKT + RV+ L+AN P +L L Sbjct: 33 ADALERYHHTPEQVAVIEAPLEPLLVVAGAGSGKTDTMASRVV-WLVANGLVRPQEILGL 91 Query: 69 THTKAAAAEMSHRV------LEIITAWSHLSD 94 T T+ AA E++ RV LE WS D Sbjct: 92 TFTRKAAGELAERVNQRLRMLEASGLWSPPDD 123 >gi|291521009|emb|CBK79302.1| ATP-dependent DNA helicase PcrA [Coprococcus catus GD/7] Length = 768 Score = 39.7 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ +P +L +T T AA EM RV +I+ Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIDECQVNPWNILAITFTNKAAGEMRERVDQIV 75 >gi|297626182|ref|YP_003687945.1| UvrD/REP helicase / ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921947|emb|CBL56507.1| UvrD/REP helicase / ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 1118 Score = 39.7 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Query: 23 EQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 EQL + + P V A AGSGKT ++ RV+ L+ +L LT T+ AAAE+S+ Sbjct: 23 EQLAVIAAPLEPGVVIAAAGSGKTTVMAARVVWLVGTGQVRADQVLGLTFTRKAAAELSN 82 Query: 81 RV 82 RV Sbjct: 83 RV 84 >gi|225850544|ref|YP_002730778.1| ATP-dependent DNA helicase PcrA [Persephonella marina EX-H1] gi|225645384|gb|ACO03570.1| ATP-dependent DNA helicase PcrA [Persephonella marina EX-H1] Length = 696 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 64/167 (38%), Gaps = 39/167 (23%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ +++ L+ P +L +T T AA+EM RV Sbjct: 24 VLAGAGSGKTKVITHKIIFLIKELEIPLDRILAITFTNKAASEMKERVKN---------- 73 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + + E P + T H+FC +++ + Sbjct: 74 --------------------------YLGLEEEPQW--ISTFHSFCVKVLRSEAESIGYS 105 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 F I DEE SKK I++ K + L E +K F I + +D Sbjct: 106 RDFIIYDEEDSKKAIKDVVKELNLNSDLYKPERVKHIFSNIKQSLDD 152 >gi|94265105|ref|ZP_01288871.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1] gi|93454435|gb|EAT04730.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1] Length = 1239 Score = 39.7 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 5/123 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + LR +L P +L L+ T+AA AE+ R+ + Sbjct: 19 IEASAGTGKTWSITALYLRFILERQLPVEKILVLSFTEAATAELHERLRARLQGAVDAYQ 78 Query: 95 EILSAEITK----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 L+ E + + + ++ + LL L + V TIH FC ++QQ E Sbjct: 79 RFLNGEQPASDPFLAALTSHSRNPAQDQVLLQRALASIDQAAVLTIHGFCHRMLQQGAFE 138 Query: 151 ANI 153 + + Sbjct: 139 SGM 141 >gi|51598887|ref|YP_073075.1| exodeoxyribonuclease V, beta chain [Borrelia garinii PBi] gi|51573458|gb|AAU07483.1| exodeoxyribonuclease V, beta chain [Borrelia garinii PBi] Length = 1168 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII 86 + A+AG+GKTHIL V+ L+ + + +L LT T A EM R+L+ I Sbjct: 16 IEASAGTGKTHILENLVINLIKTKLYSINEVLVLTFTNKATEEMHTRILKAI 67 >gi|327478847|gb|AEA82157.1| DNA-dependent helicase II [Pseudomonas stutzeri DSM 4166] Length = 729 Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 39/136 (28%) Query: 36 VSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +LV R+ L + A ++L +T T AAAEM R+ +++ H++ Sbjct: 29 VLAGAGSGKTRVLVHRIAWLHQVERASLHSILSVTFTNKAAAEMRQRIEQLL----HVN- 83 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P G+ V T H +++ EA + Sbjct: 84 ---------------------------------PQGMWVGTFHGLAHRLLRAHWREAKLA 110 Query: 155 SHFAIADEEQSKKLIE 170 +F I D + ++L++ Sbjct: 111 ENFQILDSDDQQRLVK 126 >gi|328542978|ref|YP_004303087.1| DNA helicase II protein [Polymorphum gilvum SL003B-26A1] gi|326412724|gb|ADZ69787.1| DNA helicase II protein [Polymorphum gilvum SL003B-26A1] Length = 812 Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L + A PS +L +T T AA EM R+ +I Sbjct: 66 VLAGAGTGKTRVLTTRIAHILSSGRAWPSQILAVTFTNKAAREMRERIGHLI 117 >gi|307566117|ref|ZP_07628575.1| putative phage head-tail adaptor [Prevotella amnii CRIS 21A-A] gi|307345305|gb|EFN90684.1| putative phage head-tail adaptor [Prevotella amnii CRIS 21A-A] Length = 1140 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 6/126 (4%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSH-LS 93 A+AGSGKT L + +L+ +P + +L +T T A +EM R+L + H L+ Sbjct: 16 ASAGSGKTFTLTVEFISILV--KYPEDYNKMLAVTFTNKATSEMKLRILSQLYGIGHGLA 73 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 E K + + A ++L + +VQTI AF +A+++ E + Sbjct: 74 SSKSYLEKVKANTALTEATIRNNALYVLEKLTHEYHYFRVQTIDAFFQAVLRNLGKELGL 133 Query: 154 TSHFAI 159 T++ + Sbjct: 134 TANLRV 139 >gi|297571848|ref|YP_003697622.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595] gi|296932195|gb|ADH93003.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595] Length = 836 Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L R+ L+ A A P +L +T T AA EM R+ Sbjct: 73 VVAGAGSGKTRVLTTRIAYLIAAGKARPGEILAITFTNKAAKEMRERL 120 >gi|255067137|ref|ZP_05318992.1| ATP-dependent DNA helicase Rep [Neisseria sicca ATCC 29256] gi|255048505|gb|EET43969.1| ATP-dependent DNA helicase Rep [Neisseria sicca ATCC 29256] Length = 666 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ L++ + P T+ +T T AA EM RV +++ Sbjct: 20 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAATEMQERVAKML 71 >gi|241759542|ref|ZP_04757645.1| DNA helicase II [Neisseria flavescens SK114] gi|241320099|gb|EER56460.1| DNA helicase II [Neisseria flavescens SK114] Length = 735 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQTSVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|319638182|ref|ZP_07992945.1| ATP-dependent DNA helicase [Neisseria mucosa C102] gi|317400455|gb|EFV81113.1| ATP-dependent DNA helicase [Neisseria mucosa C102] Length = 666 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ L++ + P T+ +T T AA EM RV +++ Sbjct: 20 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAATEMQERVAKML 71 >gi|311740890|ref|ZP_07714717.1| ATP-dependent DNA helicase PcrA [Corynebacterium pseudogenitalium ATCC 33035] gi|311304410|gb|EFQ80486.1| ATP-dependent DNA helicase PcrA [Corynebacterium pseudogenitalium ATCC 33035] Length = 841 Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 53/216 (24%), Positives = 89/216 (41%), Gaps = 58/216 (26%) Query: 10 HSETIDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLL 66 SE+ D +++ + Q L + + A AGSGKT +L +R+ L+ +P +L Sbjct: 34 QSESPDALTEGLNPQQLEAVTHSGSPLLIVAGAGSGKTAVLTRRIAYLMRHRGVNPWEIL 93 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AAAEM RV ++ P M Sbjct: 94 AITFTNKAAAEMKERVGGLV---------------------GPVAERMW----------- 121 Query: 127 TPGGLKVQTIHAFCEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 V T H+ C I++Q L + ++F I D + +++L L+ I D Sbjct: 122 ------VSTFHSICVRILRQNAQLVPGLNTNFTIYDGDDARRL--------LSMIAKDMQ 167 Query: 186 EELKKAFYEIL--EISNDEDIETLISDIISNRTALK 219 +LKK +L +ISN ++ ++I +TAL+ Sbjct: 168 LDLKKYTPRVLANQISNHKN------ELIGPKTALE 197 >gi|295676242|ref|YP_003604766.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. CCGE1002] gi|295436085|gb|ADG15255.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. CCGE1002] Length = 1243 Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 7/118 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSH 91 + A+AG+GKT + +RLLL N + +L +T TKAA AE+ R+ L + Sbjct: 28 IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRGRLAELHRAIE 87 Query: 92 LSDEILSAEITKI---QGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + D+ I ++ N + A ++ L T + TIHAFC+ +Q+ Sbjct: 88 MDDDAGDPFIRRLFETTLAPDNGIEREAALKVVRRALRTFDQAAIHTIHAFCQRALQE 145 >gi|226198600|ref|ZP_03794166.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei Pakistan 9] gi|225929343|gb|EEH25364.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei Pakistan 9] Length = 1270 Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P ++ + R L + + TIHAFC+ Sbjct: 87 TGDDGGDPFIARLFETTLAPERGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|150006034|ref|YP_001300778.1| putative helicase [Bacteroides vulgatus ATCC 8482] gi|149934458|gb|ABR41156.1| putative helicase [Bacteroides vulgatus ATCC 8482] Length = 796 Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 57/149 (38%), Gaps = 42/149 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT +L ++ LL P ++L LT T AA EM R+ + Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLERGYTPWSILALTFTNKAAREMKERIARQVG-------- 76 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +AR+L + T H+ I++ TS Sbjct: 77 -------------------DQARYLWMG-----------TFHSIFSRILRCEAQAVGFTS 106 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDN 184 +F I D SK LI KS + + LD+ Sbjct: 107 NFTIYDSSDSKSLI----KSIVKEMQLDD 131 >gi|53718918|ref|YP_107904.1| putative exodeoxyribonuclease V subunit beta [Burkholderia pseudomallei K96243] gi|52209332|emb|CAH35277.1| putative exodeoxyribonuclease V beta chain [Burkholderia pseudomallei K96243] Length = 1270 Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P ++ + R L + + TIHAFC+ Sbjct: 87 TGDDGGDPFIARLFETTLAPERGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|53724197|ref|YP_103384.1| exodeoxyribonuclease V subunit beta [Burkholderia mallei ATCC 23344] gi|121599132|ref|YP_992524.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei SAVP1] gi|124385391|ref|YP_001026675.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei NCTC 10229] gi|126449813|ref|YP_001080042.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei NCTC 10247] gi|167004431|ref|ZP_02270189.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei PRL-20] gi|254178330|ref|ZP_04884985.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei ATCC 10399] gi|254200341|ref|ZP_04906707.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei FMH] gi|254358920|ref|ZP_04975193.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei 2002721280] gi|52427620|gb|AAU48213.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei ATCC 23344] gi|121227942|gb|ABM50460.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei SAVP1] gi|124293411|gb|ABN02680.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei NCTC 10229] gi|126242683|gb|ABO05776.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei NCTC 10247] gi|147749937|gb|EDK57011.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei FMH] gi|148028047|gb|EDK86068.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei 2002721280] gi|160699369|gb|EDP89339.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei ATCC 10399] gi|243060257|gb|EES42443.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei PRL-20] Length = 1270 Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P ++ + R L + + TIHAFC+ Sbjct: 87 TGDDGGDPFIARLFETTLAPERGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|255262981|ref|ZP_05342323.1| DNA helicase II [Thalassiobium sp. R2A62] gi|255105316|gb|EET47990.1| DNA helicase II [Thalassiobium sp. R2A62] Length = 797 Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ L+ NA P+ +L +T T AA EM RV Sbjct: 52 AGAGTGKTKALTSRIVHLMSTGNARPNEILAVTFTNKAAREMKIRV 97 >gi|164687187|ref|ZP_02211215.1| hypothetical protein CLOBAR_00828 [Clostridium bartlettii DSM 16795] gi|164603611|gb|EDQ97076.1| hypothetical protein CLOBAR_00828 [Clostridium bartlettii DSM 16795] Length = 739 Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 64/223 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A G+GKT I+ V +LL N + +L LT+ +AA R+ +I+ Sbjct: 26 VPAVPGAGKTFIVTNLVAKLLEENKNEKGKILILTYMNSAANNFKGRIKKILEEKG---- 81 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +E+ G +V TIH+ I+++ P ++ Sbjct: 82 ------------------------------IESTNGFEVMTIHSLAAKIIKEKPEAMMLS 111 Query: 155 SHFAIADEEQSKKL--------------------IEEAKKSTLASIMLDNNEELKKAFYE 194 F IAD+ Q + ++E K I L E + F+E Sbjct: 112 EDFNIADDFQKTMMLNDCINTFRASGGETAFRFFLKEQKNQMWYDIQL---EAWENGFFE 168 Query: 195 ILEIS------NDEDIETLISDIISNRTALKLIFFFFSYLWRR 231 ++ S ND ++L ++ +SN+ LK+I F ++ +R Sbjct: 169 LVSKSISNLKYNDISPQSLEANTLSNKGILKIISFIYTEYDKR 211 >gi|163788705|ref|ZP_02183150.1| ATP-dependent DNA helicase II [Flavobacteriales bacterium ALC-1] gi|159875942|gb|EDP70001.1| ATP-dependent DNA helicase II [Flavobacteriales bacterium ALC-1] Length = 776 Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ +L LT T AA EM R+ +I+ Sbjct: 25 IIAGAGSGKTRVLTYRIAYLMAQGVDAFNILALTFTNKAAKEMKGRIADIV 75 >gi|72382484|ref|YP_291839.1| DNA helicase/exodeoxyribonuclease V subunit beta [Prochlorococcus marinus str. NATL2A] gi|72002334|gb|AAZ58136.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Prochlorococcus marinus str. NATL2A] Length = 1261 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 24/132 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT L VLRLL + + +L ++ T+A A+E+ R++E + L+ Sbjct: 21 IEASAGTGKTFSLSHLVLRLLTEKEYSINEILVVSFTEATASEIKARIIERLI----LAL 76 Query: 95 EILSAEITKIQGKKPNKSD-----------MSKAR-----HLLITILETPGGLKVQTIHA 138 +I+ + T + KP K D SK + LL+ LE + TIH Sbjct: 77 KIIESINTNV---KPYKIDNVLNEWVDLNITSKEKALYIASLLLEALERIDNADITTIHG 133 Query: 139 FCEAIMQQFPLE 150 FC +++ +E Sbjct: 134 FCSKTLRREAIE 145 >gi|331270358|ref|YP_004396850.1| UvrD/REP helicase [Clostridium botulinum BKT015925] gi|329126908|gb|AEB76853.1| UvrD/REP helicase [Clostridium botulinum BKT015925] Length = 761 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHT 71 +DL S EQ A+ V A AGSGKT +L R+ ++ P +L +T T Sbjct: 1 MDLKSLLNEEQYKAATAIEGPVLVLAGAGSGKTRVLTYRIAHMIEDLGIPQYNILAITFT 60 Query: 72 KAAAAEMSHRVLEIIT 87 AA EM R+ ++++ Sbjct: 61 NKAAGEMKDRIKKLVS 76 >gi|307706581|ref|ZP_07643388.1| recombination helicase AddA [Streptococcus mitis SK321] gi|307618036|gb|EFN97196.1| recombination helicase AddA [Streptococcus mitis SK321] Length = 1216 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ +D Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERLEKKISQQIQETDG 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|237811673|ref|YP_002896124.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei MSHR346] gi|237504018|gb|ACQ96336.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei MSHR346] Length = 1260 Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P ++ + R L + + TIHAFC+ Sbjct: 87 TGDDGGDPFIARLFETTLAPERGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|261365097|ref|ZP_05977980.1| ATP-dependent DNA helicase Rep [Neisseria mucosa ATCC 25996] gi|288566523|gb|EFC88083.1| ATP-dependent DNA helicase Rep [Neisseria mucosa ATCC 25996] Length = 666 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ L++ + P T+ +T T AA EM RV +++ Sbjct: 20 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAATEMQERVAKML 71 >gi|190571383|ref|YP_001975741.1| helicase II, UvrD [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018782|ref|ZP_03334590.1| helicase II, UvrD [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357655|emb|CAQ55099.1| helicase II, UvrD [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995733|gb|EEB56373.1| helicase II, UvrD [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 637 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 D +S EQ LA ++ + A AG+GKT + R+ ++ +A+ +L +T T Sbjct: 3 DYLSLLNPEQQLAVTNINGPVLILAGAGTGKTRTITSRIAHIIRNGHAYSDEILAVTFTN 62 Query: 73 AAAAEMSHRVLEI 85 AA EM RVLE+ Sbjct: 63 KAANEMVSRVLEL 75 >gi|118497381|ref|YP_898431.1| UvrD/REP superfamily I DNA/RNA helicase [Francisella tularensis subsp. novicida U112] gi|195536071|ref|ZP_03079078.1| UvrD/REP helicase family protein [Francisella tularensis subsp. novicida FTE] gi|254372746|ref|ZP_04988235.1| ATP-dependent DNA helicase [Francisella tularensis subsp. novicida GA99-3549] gi|118423287|gb|ABK89677.1| UvrD/REP superfamily I DNA and RNA helicases [Francisella novicida U112] gi|151570473|gb|EDN36127.1| ATP-dependent DNA helicase [Francisella novicida GA99-3549] gi|194372548|gb|EDX27259.1| UvrD/REP helicase family protein [Francisella tularensis subsp. novicida FTE] Length = 671 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 38/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++++++ L+ +P+ ++L +T T AA EM RV Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV------------ 69 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 KS + K E GL + T H+ +I+++ +E Sbjct: 70 ----------------KSRLDK---------EKSKGLMISTFHSLGLSILKKHFIELGYK 104 Query: 155 SHFAIADEEQSKKLI 169 +F + D S LI Sbjct: 105 KNFTLFDSHDSLALI 119 >gi|116050720|ref|YP_790459.1| putative DNA helicase [Pseudomonas aeruginosa UCBPP-PA14] gi|115585941|gb|ABJ11956.1| putative DNA helicase [Pseudomonas aeruginosa UCBPP-PA14] Length = 1707 Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEM 78 T + ++A D + V A GSGKT ++V R+ LL P+T ++ LT + AA E+ Sbjct: 1100 TTQKLIVADDDDINRLVLAGPGSGKTRVIVHRIAYLLRVRRVPATSIVALTFNRHAANEI 1159 Query: 79 SHRVLEIITA 88 R+L ++ A Sbjct: 1160 RKRLLALVGA 1169 >gi|312623315|ref|YP_004024928.1| uvrd/rep helicase [Caldicellulosiruptor kronotskyensis 2002] gi|312203782|gb|ADQ47109.1| UvrD/REP helicase [Caldicellulosiruptor kronotskyensis 2002] Length = 954 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 30/128 (23%) Query: 37 SANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 SA+AG GKT + + ++ + A P+ ++C+T+T+ AA E+ R II+ + Sbjct: 8 SASAGCGKTESIANLYIDIINSEKATPNEIVCITYTEKAAKELKSR---IISKAKQKGLD 64 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +L+ I+KIQ ++TIH+FC +++ + A + + Sbjct: 65 LLT--ISKIQNS------------------------HIKTIHSFCMYLLRFYWAWARVDA 98 Query: 156 HFAIADEE 163 +F I ++ Sbjct: 99 NFKIVPDQ 106 >gi|291456654|ref|ZP_06596044.1| ATP-dependent DNA helicase PcrA [Bifidobacterium breve DSM 20213] gi|291381931|gb|EFE89449.1| ATP-dependent DNA helicase PcrA [Bifidobacterium breve DSM 20213] Length = 901 Score = 39.7 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L +R+ +L A PS +L +T T AA EM R+ +I Sbjct: 46 IGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNKAAVEMRERLGSLI 97 >gi|225868711|ref|YP_002744659.1| ATP-dependent exonuclease subunit A [Streptococcus equi subsp. zooepidemicus] gi|251764568|sp|C0MGY6|ADDA_STRS7 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|225701987|emb|CAW99551.1| putative ATP-dependent exonuclease subunit A [Streptococcus equi subsp. zooepidemicus] Length = 1214 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 21/136 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII-TAWSHLSD 94 VSA+AGSGKT ++V+R+L +L L T T AA E+ R+ + + TA + D Sbjct: 46 VSASAGSGKTFVMVERILDKILRGIPVDRLFISTFTVKAATELIERIEKKLHTAIAETQD 105 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 L A + Q + +++D+ T+ AF + ++ Q I+ Sbjct: 106 YQLKAYLND-QLQALSQADIG-------------------TMDAFAQKLVHQHGYVLGIS 145 Query: 155 SHFAIADEEQSKKLIE 170 HF I ++ + +++ Sbjct: 146 PHFRIIQDKAEQDILK 161 >gi|254458799|ref|ZP_05072223.1| UvrD/REP helicase subfamily [Campylobacterales bacterium GD 1] gi|207084565|gb|EDZ61853.1| UvrD/REP helicase subfamily [Campylobacterales bacterium GD 1] Length = 682 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSH 91 A AGSGKT +V R+ L+ P S L LT T AA EM R L++I S+ Sbjct: 27 AGAGSGKTTTIVSRLAYLVEVLGIPASNTLTLTFTNKAAKEMRERALDMIKDISY 81 >gi|298368953|ref|ZP_06980271.1| ATP-dependent DNA helicase Rep [Neisseria sp. oral taxon 014 str. F0314] gi|298282956|gb|EFI24443.1| ATP-dependent DNA helicase Rep [Neisseria sp. oral taxon 014 str. F0314] Length = 688 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ L++ + P T+ +T T AA EM RV +++ Sbjct: 38 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAATEMQERVAKML 89 >gi|255348990|ref|ZP_05380997.1| DNA helicase [Chlamydia trachomatis 70] gi|255503529|ref|ZP_05381919.1| DNA helicase [Chlamydia trachomatis 70s] gi|255507207|ref|ZP_05382846.1| DNA helicase [Chlamydia trachomatis D(s)2923] gi|296435215|gb|ADH17393.1| DNA helicase [Chlamydia trachomatis E/150] gi|296438934|gb|ADH21087.1| DNA helicase [Chlamydia trachomatis E/11023] Length = 634 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L S+ + Q+ A + P + V A AG+GKT ++ R+L L+ + P +L +T T Sbjct: 2 LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILHLIEESRLDPKQILAITFTNK 61 Query: 74 AAAEMSHRV 82 AA E+ RV Sbjct: 62 AANELKERV 70 >gi|94263170|ref|ZP_01286988.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1] gi|93456541|gb|EAT06655.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1] Length = 1239 Score = 39.7 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 5/123 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + LR +L P +L L+ T+AA AE+ R+ + Sbjct: 19 IEASAGTGKTWSITALYLRFILERQLPVEKILVLSFTEAATAELHERLRARLQGAVDAYQ 78 Query: 95 EILSAEITK----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 L+ E + + + ++ + LL L + V TIH FC ++QQ E Sbjct: 79 RFLNGEQPASDPFLAALTSHSRNPAQDQVLLQRALASIDQAAVLTIHGFCHRMLQQGAFE 138 Query: 151 ANI 153 + + Sbjct: 139 SGM 141 >gi|85708952|ref|ZP_01040018.1| DNA and RNA helicase [Erythrobacter sp. NAP1] gi|85690486|gb|EAQ30489.1| DNA and RNA helicase [Erythrobacter sp. NAP1] Length = 771 Score = 39.7 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R+ L+ A PS +LC+T T AA EM RV Sbjct: 44 AGAGTGKTAALTSRLAHLVATRRAWPSQILCVTFTNKAAREMRERV 89 >gi|323484921|ref|ZP_08090276.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14163] gi|323401802|gb|EGA94145.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14163] Length = 813 Score = 39.7 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ +P ++ +T T AAAEM RV +I+ Sbjct: 24 VLAGAGSGKTRVLTHRIAYLIEEKQVNPWNIMAITFTNKAAAEMRERVDKIV 75 >gi|302669040|ref|YP_003832865.1| ATP-dependent DNA helicase UvrD/REP family protein [Butyrivibrio proteoclasticus B316] gi|302397380|gb|ADL36283.1| ATP-dependent DNA helicase UvrD/REP family [Butyrivibrio proteoclasticus B316] Length = 643 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 6/65 (9%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A AGSGKT + R+ ++ A +L +T T AA EM R L + L D++L Sbjct: 27 AGAGSGKTRTITYRIAYMIDAGIDTRNILAITFTNKAAKEMKERALAL------LDDKVL 80 Query: 98 SAEIT 102 +T Sbjct: 81 PPTLT 85 >gi|300689860|ref|YP_003750855.1| ATP-dependent DNA helicase [Ralstonia solanacearum PSI07] gi|299076920|emb|CBJ49533.1| ATP-dependent DNA helicase [Ralstonia solanacearum PSI07] Length = 705 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++ Q++ L+L P + +T T AA EM RV +++ Sbjct: 26 VLAGAGSGKTRVITQKIAHLILDKGFEPRNIAAVTFTNKAAKEMQERVAKLMDG 79 >gi|302407938|ref|XP_003001804.1| ATP-dependent DNA helicase srs2 [Verticillium albo-atrum VaMs.102] gi|261359525|gb|EEY21953.1| ATP-dependent DNA helicase srs2 [Verticillium albo-atrum VaMs.102] Length = 999 Score = 39.7 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 3/67 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75 +++ + + +S PT + + A GSGKTH L RV+ LL A HP+ ++ T T +A Sbjct: 18 LNKAQCRAVTSSAPTVA--ILAGPGSGKTHTLTSRVVWLLENAGYHPADIVVATFTVKSA 75 Query: 76 AEMSHRV 82 EM R+ Sbjct: 76 REMKERI 82 >gi|220920723|ref|YP_002496024.1| UvrD/REP helicase [Methylobacterium nodulans ORS 2060] gi|219945329|gb|ACL55721.1| UvrD/REP helicase [Methylobacterium nodulans ORS 2060] Length = 816 Score = 39.7 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Query: 22 SEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMS 79 +EQ A + T V A AG+GKT +L R+ L+ + A P +L +T T AA EM Sbjct: 74 AEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIAIGRARPFDILAVTFTNKAAREMK 133 Query: 80 HRVLEII 86 R+ +I Sbjct: 134 ERIGALI 140 >gi|328951182|ref|YP_004368517.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884] gi|328451506|gb|AEB12407.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884] Length = 900 Score = 39.7 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 14/108 (12%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A+AG+GKT LV+R L LL A+ P + +T T+AAAA++ R I +S L E Sbjct: 6 ASAGTGKTTALVRRYLELLEAHP-PHRVAAVTFTRAAAAQLKSR---IYAGFSVLERE-- 59 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 G P + + L +L P + TIH F +++ Sbjct: 60 ----GAYYGYVPPPERLPRLFSLKEAVLAAP----IHTIHGFFAELLR 99 >gi|310820608|ref|YP_003952966.1| ATP-dependent DNA helicase, uvrd/rep family protein [Stigmatella aurantiaca DW4/3-1] gi|309393680|gb|ADO71139.1| ATP-dependent DNA helicase, UvrD/REP family protein [Stigmatella aurantiaca DW4/3-1] Length = 1213 Score = 39.7 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 15/136 (11%) Query: 44 KTHILVQRVLRLLLANAH------PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS--DE 95 KT+ LV VL LL P+ L LT T AAAEM R + A + + Sbjct: 23 KTYSLVTMVLHLLAGAREAAPALRPAKLCMLTFTDKAAAEMRARTRSRLDALAQAEAKEP 82 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 L A + ++ P + R E G + T H+ C ++++ P I Sbjct: 83 ELRASLERLDRPFPAQDAWRAMR-------EELGSATLGTFHSLCGQLLRRAPPGLGIDP 135 Query: 156 HFAIADEEQSKKLIEE 171 F + DE ++ L+++ Sbjct: 136 SFEVLDELEASNLVQD 151 >gi|300173630|ref|YP_003772796.1| ATP-dependent DNA helicase PcrA [Leuconostoc gasicomitatum LMG 18811] gi|299888009|emb|CBL91977.1| ATP-dependent DNA helicase PcrA [Leuconostoc gasicomitatum LMG 18811] Length = 747 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +LIS +Q A T+ + A AGSGKT +L R+ L+ N P +L +T T Sbjct: 5 ELISGMNDKQAEAVQITQGPLLIMAGAGSGKTRVLTHRIAHLVQDLNVFPWRILAITFTN 64 Query: 73 AAAAEMSHRVLEIIT 87 AA EM R+ +++ Sbjct: 65 KAAKEMRERISSLLS 79 >gi|289525651|emb|CBJ15132.1| DNA helicase [Chlamydia trachomatis Sweden2] Length = 634 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L S+ + Q+ A + P + V A AG+GKT ++ R+L L+ + P +L +T T Sbjct: 2 LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILHLIEESRLDPKQILAITFTNK 61 Query: 74 AAAEMSHRV 82 AA E+ RV Sbjct: 62 AANELKERV 70 >gi|315156747|gb|EFU00764.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0043] Length = 791 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ +P +L +T T AA EM RV Sbjct: 67 VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153 NK +LET G + V T H+ C I+++ + Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147 Query: 154 TSHFAIADEEQSKKLIE 170 +F I D + K L++ Sbjct: 148 NRNFTIIDPSEQKTLMK 164 >gi|212638095|ref|YP_002314615.1| ATP-dependent DNA helicase PcrA [Anoxybacillus flavithermus WK1] gi|212559575|gb|ACJ32630.1| ATP-dependent DNA helicase PcrA [Anoxybacillus flavithermus WK1] Length = 726 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ P +L +T T AA EM RV I+ Sbjct: 34 IMAGAGSGKTRVLTHRIAYLMAEKGVAPWNILAITFTNKAAREMKERVERIV 85 >gi|154482468|ref|ZP_02024916.1| hypothetical protein EUBVEN_00135 [Eubacterium ventriosum ATCC 27560] gi|149736669|gb|EDM52555.1| hypothetical protein EUBVEN_00135 [Eubacterium ventriosum ATCC 27560] Length = 609 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 34 AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81 A V A GSGKT ++ R+ L+ A P +L +T TKAAA M R Sbjct: 17 AMVLAGPGSGKTTVITHRIKNLIEKAEVRPENILVVTFTKAAAISMQKR 65 >gi|254188292|ref|ZP_04894803.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|254260700|ref|ZP_04951754.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 1710a] gi|157935971|gb|EDO91641.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|254219389|gb|EET08773.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 1710a] Length = 1270 Score = 39.7 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P ++ + R L + + TIHAFC+ Sbjct: 87 TGDGGGDPFIARLFETTLAPGRGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|325846585|ref|ZP_08169500.1| putative ATP-dependent DNA helicase PcrA [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481343|gb|EGC84384.1| putative ATP-dependent DNA helicase PcrA [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 729 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 39/137 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L + L+ +P+ +L +T T AA EM R+ S+L + Sbjct: 23 VVAGAGSGKTRVLTTSISYLIKEKFVNPTNILAITFTNKAANEMKERI-------SNLLN 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E +S HL I T H+ C I++ + Sbjct: 76 EDVS--------------------HLWIG-----------TFHSICARILRMNINKIGYD 104 Query: 155 SHFAIADEEQSKKLIEE 171 ++F I D K L++E Sbjct: 105 NNFTIYDTNDQKTLVKE 121 >gi|307825819|ref|ZP_07656035.1| exodeoxyribonuclease V, beta subunit [Methylobacter tundripaludum SV96] gi|307733127|gb|EFO03988.1| exodeoxyribonuclease V, beta subunit [Methylobacter tundripaludum SV96] Length = 1185 Score = 39.7 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 14/128 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT+ + VLR ++ P LL +T TKAA E+ RV + D Sbjct: 20 IEASAGTGKTYAIAMLVLRFVVEQGIPIEKLLVVTFTKAATEELKDRVRSRLAEARRALD 79 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 E + I K + ++ K R L + +L+ + TIH FC+ + Sbjct: 80 SLDRQAQGRHTENIDDNIVDWLAKLDIEPELVKQR-LQMALLDIDQA-GIFTIHGFCQRV 137 Query: 144 MQQFPLEA 151 +++ LE+ Sbjct: 138 LREHALES 145 >gi|124024248|ref|YP_001018555.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9303] gi|123964534|gb|ABM79290.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9303] Length = 802 Score = 39.7 bits (91), Expect = 0.37, Method: Composition-based stats. Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 2/54 (3%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT L R+ L+ A+ A P+ +L +T T AA EM R LE++ A Sbjct: 24 VVAGAGSGKTRALTHRIAHLIGAHGADPAQILAVTFTNKAAREMKDR-LELLLA 76 >gi|221234533|ref|YP_002516969.1| DNA helicase II [Caulobacter crescentus NA1000] gi|220963705|gb|ACL95061.1| DNA helicase II [Caulobacter crescentus NA1000] Length = 811 Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A P +L +T T AA EM R+ II Sbjct: 66 VLAGAGTGKTRVLTTRLAHILATGRARPWEILAVTFTNKAAREMRERITHII 117 >gi|218194490|gb|EEC76917.1| hypothetical protein OsI_15164 [Oryza sativa Indica Group] Length = 684 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM+ R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLRRQEAEPGQILLLAFGRQAAGEMNDRIKE 263 >gi|196018414|ref|XP_002118799.1| hypothetical protein TRIADDRAFT_62806 [Trichoplax adhaerens] gi|190578180|gb|EDV18715.1| hypothetical protein TRIADDRAFT_62806 [Trichoplax adhaerens] Length = 863 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E S + ++S+TK + AS A A AG+GKT +L RV+ L+ A PS +L Sbjct: 380 EFSNFVGILSKTKVKLDQASKAIGDAEYKAGAGTGKTKVLTSRVIHLINKGFAFPSQILA 439 Query: 68 LTHT 71 +T T Sbjct: 440 VTFT 443 >gi|87123150|ref|ZP_01079001.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. RS9917] gi|86168870|gb|EAQ70126.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. RS9917] Length = 796 Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 22/146 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+ + A P+ +L +T T AA EM R LE+ Sbjct: 24 VVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFTNKAAREMKER-LEL--------- 73 Query: 95 EILSAEITKIQGKKP-NKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQQFPLEA- 151 +L+ + + Q +P + + R L I E L + T HA A M +F ++ Sbjct: 74 -LLAQRLAQSQFGQPWSTLPPVEQRQLRSRIYREVTKDLWIGTFHALF-ARMLRFDIDKF 131 Query: 152 ------NITSHFAIADEEQSKKLIEE 171 + T F+I DE ++ L++E Sbjct: 132 KDAEGLSWTKQFSIYDETDAQSLVKE 157 >gi|294789337|ref|ZP_06754575.1| ATP-dependent DNA helicase Rep [Simonsiella muelleri ATCC 29453] gi|294482762|gb|EFG30451.1| ATP-dependent DNA helicase Rep [Simonsiella muelleri ATCC 29453] Length = 663 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 38/138 (27%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +V A AGSGKT ++ +++ L+ A P + +T T AA EM R+ Sbjct: 19 FVLAGAGSGKTRVITEKIAYLITQAGYKPHHIAAITFTNKAAKEMQERI----------- 67 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 S + K Q + GL V T HA I+++ N Sbjct: 68 ----SHRLGKNQTR----------------------GLIVSTFHALGMRILREEATNLNY 101 Query: 154 TSHFAIADEEQSKKLIEE 171 +F+I D S KLI E Sbjct: 102 KKNFSILDSSDSAKLIGE 119 >gi|229548667|ref|ZP_04437392.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 29200] gi|307269775|ref|ZP_07551105.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4248] gi|312953106|ref|ZP_07771955.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0102] gi|229306183|gb|EEN72179.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 29200] gi|306513885|gb|EFM82487.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4248] gi|310628940|gb|EFQ12223.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0102] gi|315036100|gb|EFT48032.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0027] gi|315153983|gb|EFT97999.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0031] Length = 791 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ +P +L +T T AA EM RV Sbjct: 67 VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153 NK +LET G + V T H+ C I+++ + Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147 Query: 154 TSHFAIADEEQSKKLIE 170 +F I D + K L++ Sbjct: 148 NRNFTIIDPSEQKTLMK 164 >gi|217423556|ref|ZP_03455057.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 576] gi|217393414|gb|EEC33435.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 576] Length = 1270 Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P ++ + R L + + TIHAFC+ Sbjct: 87 TGDDGGDPFIARLFETTLAPERGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|212696136|ref|ZP_03304264.1| hypothetical protein ANHYDRO_00672 [Anaerococcus hydrogenalis DSM 7454] gi|212676765|gb|EEB36372.1| hypothetical protein ANHYDRO_00672 [Anaerococcus hydrogenalis DSM 7454] Length = 730 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 39/137 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L + L+ +P+ +L +T T AA EM R+ S+L + Sbjct: 24 VVAGAGSGKTRVLTTSISYLIKEKFVNPTNILAITFTNKAANEMKERI-------SNLLN 76 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E +S HL I T H+ C I++ + Sbjct: 77 EDVS--------------------HLWIG-----------TFHSICARILRMNINKIGYD 105 Query: 155 SHFAIADEEQSKKLIEE 171 ++F I D K L++E Sbjct: 106 NNFTIYDTNDQKTLVKE 122 >gi|254418189|ref|ZP_05031913.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3] gi|196184366|gb|EDX79342.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3] Length = 785 Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 D + EQ A + T V A AG+GKT +L R+ +L A P LL +T T Sbjct: 25 DYLEGLNPEQREAVEATEGPVLVLAGAGTGKTRVLTTRLAHILATGRARPWELLVVTFTN 84 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 85 KAAREMRERITHLI 98 >gi|254298121|ref|ZP_04965574.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 406e] gi|157807178|gb|EDO84348.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 406e] Length = 1270 Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P ++ + R L + + TIHAFC+ Sbjct: 87 TGDDGGDPFIARLFETTLAPERGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|126441299|ref|YP_001058429.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 668] gi|126220792|gb|ABN84298.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 668] Length = 1263 Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P ++ + R L + + TIHAFC+ Sbjct: 87 TGDDGGDPFIARLFETTLAPERGLDP-QTAAKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|148989180|ref|ZP_01820570.1| exonuclease RexA [Streptococcus pneumoniae SP6-BS73] gi|147925403|gb|EDK76481.1| exonuclease RexA [Streptococcus pneumoniae SP6-BS73] Length = 141 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ + I+ +D+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGIEISQLFISTFTVKAATELKERLEKKISKKIQETDD 104 Query: 96 I 96 + Sbjct: 105 V 105 >gi|310827141|ref|YP_003959498.1| hypothetical protein ELI_1549 [Eubacterium limosum KIST612] gi|308738875|gb|ADO36535.1| hypothetical protein ELI_1549 [Eubacterium limosum KIST612] Length = 1065 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68 H +L++ + E ++ + R+ V A G+GKT LV R+L LL P+ + + Sbjct: 456 HPIVTELLNAEQQEAVITA--RRAIAVIAGPGTGKTKTLVSRILHLLNERRVKPTEITAV 513 Query: 69 THTKAAAAEMSHRVLEIITAWS 90 T T AAAEM R+ +++ S Sbjct: 514 TFTNKAAAEMRERLEKVLGKRS 535 >gi|307289586|ref|ZP_07569530.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0109] gi|306499400|gb|EFM68773.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0109] gi|315164585|gb|EFU08602.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1302] Length = 791 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ +P +L +T T AA EM RV Sbjct: 67 VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153 NK +LET G + V T H+ C I+++ + Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147 Query: 154 TSHFAIADEEQSKKLIE 170 +F I D + K L++ Sbjct: 148 NRNFTIIDPSEQKTLMK 164 >gi|295426521|ref|ZP_06819171.1| ATP-dependent DNA helicase PcrA [Lactobacillus amylolyticus DSM 11664] gi|295063889|gb|EFG54847.1| ATP-dependent DNA helicase PcrA [Lactobacillus amylolyticus DSM 11664] Length = 749 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81 V A AGSGKT +L +R+ L+ N +P +L +T T AA EM R Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEKNNVNPWNILAITFTNKAANEMRER 73 >gi|118380926|ref|XP_001023625.1| UvrD/REP helicase family protein [Tetrahymena thermophila] gi|89305392|gb|EAS03380.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210] Length = 1027 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%) Query: 1 MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60 M+ N+FQ E + ++ SD ++ + A AGSGKT L+ RV L+ N Sbjct: 1 MLNKNNFQLSEEQLKIVQ---------SDIYQNQKIGACAGSGKTTTLIYRVKYLIDNNI 51 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEII 86 P ++ T AA + + +++ Sbjct: 52 EPQKIILTTFNVEAAQNLKKKAEQVL 77 >gi|16125775|ref|NP_420339.1| DNA helicase II [Caulobacter crescentus CB15] gi|13422909|gb|AAK23507.1| DNA helicase II [Caulobacter crescentus CB15] Length = 805 Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A P +L +T T AA EM R+ II Sbjct: 60 VLAGAGTGKTRVLTTRLAHILATGRARPWEILAVTFTNKAAREMRERITHII 111 >gi|328754850|gb|EGF68466.1| UvrD/REP helicase [Propionibacterium acnes HL020PA1] Length = 1072 Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AG+GKT ++ RV+ L+ + P +L LT T A AE+S R+ +T Sbjct: 34 PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93 Query: 89 WSHLSDE 95 L+ E Sbjct: 94 VGLLTSE 100 >gi|327329920|gb|EGE71674.1| putative ATP-dependent DNA helicase [Propionibacterium acnes HL097PA1] Length = 1072 Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AG+GKT ++ RV+ L+ + P +L LT T A AE+S R+ +T Sbjct: 34 PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93 Query: 89 WSHLSDE 95 L+ E Sbjct: 94 VGLLTSE 100 >gi|315109404|gb|EFT81380.1| UvrD/REP helicase [Propionibacterium acnes HL030PA2] Length = 1072 Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AG+GKT ++ RV+ L+ + P +L LT T A AE+S R+ +T Sbjct: 34 PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93 Query: 89 WSHLSDE 95 L+ E Sbjct: 94 VGLLTSE 100 >gi|314967655|gb|EFT11754.1| UvrD/REP helicase [Propionibacterium acnes HL037PA1] Length = 1072 Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AG+GKT ++ RV+ L+ + P +L LT T A AE+S R+ +T Sbjct: 34 PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93 Query: 89 WSHLSDE 95 L+ E Sbjct: 94 VGLLTSE 100 >gi|313809680|gb|EFS47414.1| UvrD/REP helicase [Propionibacterium acnes HL083PA1] Length = 1072 Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AG+GKT ++ RV+ L+ + P +L LT T A AE+S R+ +T Sbjct: 34 PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93 Query: 89 WSHLSDE 95 L+ E Sbjct: 94 VGLLTSE 100 >gi|313792361|gb|EFS40460.1| UvrD/REP helicase [Propionibacterium acnes HL110PA1] gi|313801691|gb|EFS42931.1| UvrD/REP helicase [Propionibacterium acnes HL110PA2] gi|314962480|gb|EFT06580.1| UvrD/REP helicase [Propionibacterium acnes HL082PA1] gi|315077696|gb|EFT49747.1| UvrD/REP helicase [Propionibacterium acnes HL053PA2] gi|327453453|gb|EGF00108.1| UvrD/REP helicase [Propionibacterium acnes HL092PA1] Length = 1072 Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AG+GKT ++ RV+ L+ + P +L LT T A AE+S R+ +T Sbjct: 34 PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93 Query: 89 WSHLSDE 95 L+ E Sbjct: 94 VGLLTSE 100 >gi|313771951|gb|EFS37917.1| UvrD/REP helicase [Propionibacterium acnes HL074PA1] Length = 1072 Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AG+GKT ++ RV+ L+ + P +L LT T A AE+S R+ +T Sbjct: 34 PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93 Query: 89 WSHLSDE 95 L+ E Sbjct: 94 VGLLTSE 100 >gi|294669243|ref|ZP_06734323.1| ATP-dependent DNA helicase Rep [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308875|gb|EFE50118.1| ATP-dependent DNA helicase Rep [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 623 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ L++ + P T+ +T T AA EM RV +++ Sbjct: 20 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAATEMQERVAKML 71 >gi|282853719|ref|ZP_06263056.1| UvrD/REP helicase [Propionibacterium acnes J139] gi|282583172|gb|EFB88552.1| UvrD/REP helicase [Propionibacterium acnes J139] gi|314983238|gb|EFT27330.1| UvrD/REP helicase [Propionibacterium acnes HL110PA3] gi|315090100|gb|EFT62076.1| UvrD/REP helicase [Propionibacterium acnes HL110PA4] Length = 1071 Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AG+GKT ++ RV+ L+ + P +L LT T A AE+S R+ +T Sbjct: 34 PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93 Query: 89 WSHLSDE 95 L+ E Sbjct: 94 VGLLTSE 100 >gi|239993134|ref|ZP_04713658.1| UvrD/REP helicase [Alteromonas macleodii ATCC 27126] Length = 701 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 40/82 (48%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64 N Q+ + L S E L+ + + A AG+GKT+ L + +L+L P Sbjct: 8 NPQQQEAVNYGLSSVGAGETELSDETHHPLLIIAGAGTGKTNTLAHKTAQLILHGVAPER 67 Query: 65 LLCLTHTKAAAAEMSHRVLEII 86 +L +T + A++E+S R II Sbjct: 68 ILLMTFARRASSELSSRANRII 89 >gi|256420067|ref|YP_003120720.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588] gi|256034975|gb|ACU58519.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588] Length = 783 Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ +L LT T AA EM RV +I+ Sbjct: 26 IVAGAGSGKTKVLTTRIAHLMRNGVDAFNILSLTFTNKAAREMKERVEKIL 76 >gi|50842799|ref|YP_056026.1| putative ATP-dependent DNA helicase [Propionibacterium acnes KPA171202] gi|289425489|ref|ZP_06427266.1| UvrD/REP helicase [Propionibacterium acnes SK187] gi|295130853|ref|YP_003581516.1| UvrD/REP helicase [Propionibacterium acnes SK137] gi|50840401|gb|AAT83068.1| putative ATP-dependent DNA helicase [Propionibacterium acnes KPA171202] gi|289154467|gb|EFD03155.1| UvrD/REP helicase [Propionibacterium acnes SK187] gi|291376029|gb|ADD99883.1| UvrD/REP helicase [Propionibacterium acnes SK137] gi|313764135|gb|EFS35499.1| UvrD/REP helicase [Propionibacterium acnes HL013PA1] gi|313819377|gb|EFS57091.1| UvrD/REP helicase [Propionibacterium acnes HL046PA2] gi|313820642|gb|EFS58356.1| UvrD/REP helicase [Propionibacterium acnes HL036PA1] gi|313822553|gb|EFS60267.1| UvrD/REP helicase [Propionibacterium acnes HL036PA2] gi|313827479|gb|EFS65193.1| UvrD/REP helicase [Propionibacterium acnes HL063PA2] gi|313830016|gb|EFS67730.1| UvrD/REP helicase [Propionibacterium acnes HL007PA1] gi|313832980|gb|EFS70694.1| UvrD/REP helicase [Propionibacterium acnes HL056PA1] gi|313838405|gb|EFS76119.1| UvrD/REP helicase [Propionibacterium acnes HL086PA1] gi|314914865|gb|EFS78696.1| UvrD/REP helicase [Propionibacterium acnes HL005PA4] gi|314918020|gb|EFS81851.1| UvrD/REP helicase [Propionibacterium acnes HL050PA1] gi|314920396|gb|EFS84227.1| UvrD/REP helicase [Propionibacterium acnes HL050PA3] gi|314924885|gb|EFS88716.1| UvrD/REP helicase [Propionibacterium acnes HL036PA3] gi|314929976|gb|EFS93807.1| UvrD/REP helicase [Propionibacterium acnes HL067PA1] gi|314956488|gb|EFT00776.1| UvrD/REP helicase [Propionibacterium acnes HL027PA1] gi|314957332|gb|EFT01435.1| UvrD/REP helicase [Propionibacterium acnes HL002PA1] gi|314960467|gb|EFT04569.1| UvrD/REP helicase [Propionibacterium acnes HL002PA2] gi|314972837|gb|EFT16934.1| UvrD/REP helicase [Propionibacterium acnes HL053PA1] gi|314975741|gb|EFT19836.1| UvrD/REP helicase [Propionibacterium acnes HL045PA1] gi|314983661|gb|EFT27753.1| UvrD/REP helicase [Propionibacterium acnes HL005PA1] gi|314986296|gb|EFT30388.1| UvrD/REP helicase [Propionibacterium acnes HL005PA2] gi|314989617|gb|EFT33708.1| UvrD/REP helicase [Propionibacterium acnes HL005PA3] gi|315080858|gb|EFT52834.1| UvrD/REP helicase [Propionibacterium acnes HL078PA1] gi|315084654|gb|EFT56630.1| UvrD/REP helicase [Propionibacterium acnes HL027PA2] gi|315085339|gb|EFT57315.1| UvrD/REP helicase [Propionibacterium acnes HL002PA3] gi|315095786|gb|EFT67762.1| UvrD/REP helicase [Propionibacterium acnes HL038PA1] gi|315101553|gb|EFT73529.1| UvrD/REP helicase [Propionibacterium acnes HL046PA1] gi|315105905|gb|EFT77881.1| UvrD/REP helicase [Propionibacterium acnes HL030PA1] gi|327329833|gb|EGE71588.1| putative ATP-dependent DNA helicase [Propionibacterium acnes HL096PA2] gi|327442647|gb|EGE89301.1| UvrD/REP helicase [Propionibacterium acnes HL043PA1] gi|327443715|gb|EGE90369.1| UvrD/REP helicase [Propionibacterium acnes HL043PA2] gi|327452206|gb|EGE98860.1| UvrD/REP helicase [Propionibacterium acnes HL087PA3] gi|327452695|gb|EGE99349.1| UvrD/REP helicase [Propionibacterium acnes HL083PA2] gi|328752851|gb|EGF66467.1| UvrD/REP helicase [Propionibacterium acnes HL025PA2] gi|328753882|gb|EGF67498.1| UvrD/REP helicase [Propionibacterium acnes HL087PA1] gi|328761486|gb|EGF75010.1| putative ATP-dependent DNA helicase [Propionibacterium acnes HL099PA1] Length = 1072 Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AG+GKT ++ RV+ L+ + P +L LT T A AE+S R+ +T Sbjct: 34 PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93 Query: 89 WSHLSDE 95 L+ E Sbjct: 94 VGLLTSE 100 >gi|25027350|ref|NP_737404.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens YS-314] gi|23492631|dbj|BAC17604.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens YS-314] Length = 694 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 I+L + +++ A+ P + A AG+GKT + R+ L+ P+ +L +T T Sbjct: 19 INLQDLDEDQRIAATAPRGPVCILAGAGTGKTRTITYRIAHLIDQGFVSPNRVLAVTFTS 78 Query: 73 AAAAEMSHRV 82 AA EM HR+ Sbjct: 79 RAAGEMRHRL 88 >gi|314978138|gb|EFT22232.1| UvrD/REP helicase [Propionibacterium acnes HL072PA2] gi|315088601|gb|EFT60577.1| UvrD/REP helicase [Propionibacterium acnes HL072PA1] Length = 1072 Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AG+GKT ++ RV+ L+ + P +L LT T A AE+S R+ +T Sbjct: 34 PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93 Query: 89 WSHLSDE 95 L+ E Sbjct: 94 VGLLTSE 100 >gi|313812634|gb|EFS50348.1| UvrD/REP helicase [Propionibacterium acnes HL025PA1] Length = 1072 Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AG+GKT ++ RV+ L+ + P +L LT T A AE+S R+ +T Sbjct: 34 PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93 Query: 89 WSHLSDE 95 L+ E Sbjct: 94 VGLLTSE 100 >gi|189424989|ref|YP_001952166.1| UvrD/REP helicase [Geobacter lovleyi SZ] gi|189421248|gb|ACD95646.1| UvrD/REP helicase [Geobacter lovleyi SZ] Length = 1082 Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V+A G+GKT LV R+ RLL A P ++ +T T A EM R+ Sbjct: 483 VAAGPGTGKTFTLVSRLQRLLDQGADPGRVVAITFTTRTAEEMRERL 529 >gi|270308367|ref|YP_003330425.1| UvrD/REP helicase [Dehalococcoides sp. VS] gi|270154259|gb|ACZ62097.1| UvrD/REP helicase [Dehalococcoides sp. VS] Length = 738 Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 43/149 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A GSGKT ++ R+ L+ + +P ++ +T T AA EM R Sbjct: 25 ILAGPGSGKTRVITHRIAYLIKIVGINPHRIMAVTFTNKAAREMETR------------- 71 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 L + G L + T HA C I++Q L + Sbjct: 72 -------------------------LNLLAPSAAGRLTMGTFHAICARILRQDGLPLGVP 106 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLD 183 + F I D++ + LI++A +A + LD Sbjct: 107 ADFVIYDDDDQQSLIKQA----MAELELD 131 >gi|238796709|ref|ZP_04640215.1| UvrD/REP helicase [Yersinia mollaretii ATCC 43969] gi|238719440|gb|EEQ11250.1| UvrD/REP helicase [Yersinia mollaretii ATCC 43969] Length = 1136 Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 28/52 (53%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 + A G+GKT LV RV LL P +L LT + AA EM+ R+ + T Sbjct: 214 LEAGPGTGKTQTLVGRVKGLLADGVDPRKILLLTFSNKAAGEMAERIARVDT 265 >gi|327534311|gb|AEA93145.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis OG1RF] Length = 791 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ +P +L +T T AA EM RV Sbjct: 67 VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153 NK +LET G + V T H+ C I+++ + Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147 Query: 154 TSHFAIADEEQSKKLIE 170 +F I D + K L++ Sbjct: 148 NRNFTIIDPSEQKTLMK 164 >gi|312900317|ref|ZP_07759628.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0470] gi|311292505|gb|EFQ71061.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0470] gi|315170713|gb|EFU14730.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1342] Length = 791 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ +P +L +T T AA EM RV Sbjct: 67 VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153 NK +LET G + V T H+ C I+++ + Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147 Query: 154 TSHFAIADEEQSKKLIE 170 +F I D + K L++ Sbjct: 148 NRNFTIIDPSEQKTLMK 164 >gi|313106395|ref|ZP_07792629.1| putative helicase [Pseudomonas aeruginosa 39016] gi|310879131|gb|EFQ37725.1| putative helicase [Pseudomonas aeruginosa 39016] Length = 646 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 6/89 (6%) Query: 10 HSETIDLISQTKSEQ---LLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTL 65 + T+ ++S EQ +L P A + A AGSGK+ LV RV+ +L P L Sbjct: 100 QAATLGVVSPPSEEQWAMILCRQPL--ARIFAGAGSGKSTTLVLRVVFMLCHLGVEPQRL 157 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 ++ T A+ A++ ++L ++ W + D Sbjct: 158 TVISFTNASCAQLREQLLRVLAHWQYPFD 186 >gi|255971180|ref|ZP_05421766.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T1] gi|256761491|ref|ZP_05502071.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T3] gi|255962198|gb|EET94674.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T1] gi|256682742|gb|EEU22437.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T3] gi|323479917|gb|ADX79356.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis 62] Length = 746 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ +P +L +T T AA EM RV Sbjct: 22 VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 69 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153 NK +LET G + V T H+ C I+++ + Sbjct: 70 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 102 Query: 154 TSHFAIADEEQSKKLIE 170 +F I D + K L++ Sbjct: 103 NRNFTIIDPSEQKTLMK 119 >gi|227486911|ref|ZP_03917227.1| superfamily I ATP-dependent helicase [Corynebacterium glucuronolyticum ATCC 51867] gi|227092985|gb|EEI28297.1| superfamily I ATP-dependent helicase [Corynebacterium glucuronolyticum ATCC 51867] Length = 686 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTH 70 E+ L +++ A+ P + A AG+GKT + R+ L+ A P +L +T Sbjct: 4 ESFSLEDLDPDQRVAATAPRGPVCILAGAGTGKTRTITYRIAHLINTGAVSPQRVLAVTF 63 Query: 71 TKAAAAEMSHRV 82 TK AA EM R+ Sbjct: 64 TKRAAGEMRDRL 75 >gi|225174552|ref|ZP_03728551.1| ATP-dependent DNA helicase, RecQ family [Dethiobacter alkaliphilus AHT 1] gi|225170337|gb|EEG79132.1| ATP-dependent DNA helicase, RecQ family [Dethiobacter alkaliphilus AHT 1] Length = 1609 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 76/176 (43%), Gaps = 18/176 (10%) Query: 36 VSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A GSGKT +LV ++ L L+ + LL LT ++AAA E R+ ++I ++ + Sbjct: 1065 VLAGPGSGKTRVLVHKLASLILMEDVKHEQLLMLTFSRAAATEFKKRLTQLIGGAANFIE 1124 Query: 95 -EILSAEITKIQGKKPNK---SDMSKARHLLITILETPGGLKVQTIHAFCEA-------- 142 + + + G+ N D+ KA I E G +T+ EA Sbjct: 1125 IKTFHSYCFDLMGRVGNAEKFDDVVKATIEKIRNGEVEPGRITKTVLVLDEAQDMDQDVF 1184 Query: 143 -IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 ++Q + A+ D++Q+ + L M++N + A YE+LE Sbjct: 1185 NLVQTLMAQNEDMRVIAVGDDDQNIYEFRGSSSKYLREFMVEN----QAAHYELLE 1236 >gi|218887057|ref|YP_002436378.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758011|gb|ACL08910.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 789 Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 27/46 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 V A AGSGKT +V R+ L+ S +L LT T+ +A EM HR Sbjct: 25 VIAGAGSGKTRTIVYRLANLVEQGVPASAILLLTFTRKSAREMLHR 70 >gi|313816227|gb|EFS53941.1| UvrD/REP helicase [Propionibacterium acnes HL059PA1] gi|315098848|gb|EFT70824.1| UvrD/REP helicase [Propionibacterium acnes HL059PA2] Length = 1072 Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AG+GKT ++ RV+ L+ + P +L LT T A AE+S R+ +T Sbjct: 34 PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93 Query: 89 WSHLSDE 95 L+ E Sbjct: 94 VGLLTSE 100 >gi|307944882|ref|ZP_07660219.1| ATP-dependent DNA helicase PcrA [Roseibium sp. TrichSKD4] gi|307771806|gb|EFO31030.1| ATP-dependent DNA helicase PcrA [Roseibium sp. TrichSKD4] Length = 801 Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AG+GKT +L R+ +L NA P +L +T T AA EM R+ Sbjct: 61 VLAGAGTGKTRVLTTRIAHILATGNARPFEVLAVTFTNKAAREMKERI 108 >gi|307284517|ref|ZP_07564679.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0860] gi|306503194|gb|EFM72448.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0860] Length = 791 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ +P +L +T T AA EM RV Sbjct: 67 VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153 NK +LET G + V T H+ C I+++ + Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147 Query: 154 TSHFAIADEEQSKKLIE 170 +F I D + K L++ Sbjct: 148 NRNFTIIDPSEQKTLMK 164 >gi|289428125|ref|ZP_06429828.1| UvrD/REP helicase [Propionibacterium acnes J165] gi|289158725|gb|EFD06926.1| UvrD/REP helicase [Propionibacterium acnes J165] gi|313807183|gb|EFS45676.1| UvrD/REP helicase [Propionibacterium acnes HL087PA2] gi|313825512|gb|EFS63226.1| UvrD/REP helicase [Propionibacterium acnes HL063PA1] gi|327327125|gb|EGE68904.1| putative ATP-dependent DNA helicase [Propionibacterium acnes HL096PA3] gi|327443750|gb|EGE90404.1| UvrD/REP helicase [Propionibacterium acnes HL013PA2] Length = 1072 Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AG+GKT ++ RV+ L+ + P +L LT T A AE+S R+ +T Sbjct: 34 PLKPCAVIAGAGTGKTTVMAARVVWLVASRLVSPEEILGLTFTNKATAELSERIESNLTR 93 Query: 89 WSHLSDE 95 L+ E Sbjct: 94 VGLLTSE 100 >gi|3024353|sp|P56255|PCRA_BACST RecName: Full=ATP-dependent DNA helicase pcrA gi|4930230|pdb|3PJR|A Chain A, Helicase Substrate Complex gi|15988533|pdb|1QHG|A Chain A, Structure Of Dna Helicase Mutant With Adpnp gi|157833507|pdb|1PJR|A Chain A, Structure Of Dna Helicase Length = 724 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+A H P +L +T T AA EM RV ++ Sbjct: 29 IMAGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGG 82 >gi|329117216|ref|ZP_08245933.1| ATP-dependent nuclease subunit A [Streptococcus parauberis NCFD 2020] gi|326907621|gb|EGE54535.1| ATP-dependent nuclease subunit A [Streptococcus parauberis NCFD 2020] Length = 1212 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 ++ VSA+AGSGKT ++V+R++ LL + T T AA E+ R+ Sbjct: 41 QNVLVSASAGSGKTFVMVERIIDKLLRGVAIEEMFISTFTVKAATELKERL 91 >gi|315146962|gb|EFT90978.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4244] Length = 791 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ +P +L +T T AA EM RV Sbjct: 67 VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153 NK +LET G + V T H+ C I+++ + Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147 Query: 154 TSHFAIADEEQSKKLIE 170 +F I D + K L++ Sbjct: 148 NRNFTIIDPSEQKTLMK 164 >gi|302340231|ref|YP_003805437.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293] gi|301637416|gb|ADK82843.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293] Length = 728 Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 49/167 (29%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTK 72 +D +++ + E +L P S + A AGSGKT ++ ++ ++ + P ++L +T T Sbjct: 10 LDALNRAQQEAVLYEGP--SLLILAGAGSGKTRVITSKIAYMIDRLGYDPYSILAVTFTN 67 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ P G K Sbjct: 68 KAAGEMRQRVAAMV-----------------------------------------PDGAK 86 Query: 133 V--QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL---IEEAKK 174 V +T H+F + ++ ++ +F I D+E S L +EE KK Sbjct: 87 VMIRTFHSFGAWLCRRHAKLLDLDPNFTIYDDEDSLTLLHALEEGKK 133 >gi|295394601|ref|ZP_06804820.1| ATP-dependent DNA helicase [Brevibacterium mcbrellneri ATCC 49030] gi|294972494|gb|EFG48350.1| ATP-dependent DNA helicase [Brevibacterium mcbrellneri ATCC 49030] Length = 1103 Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPS 63 S ++ +E +DL T + + A AGSGKT ++ QRVL L+AN P Sbjct: 4 SAKQIAERLDLPEPTDEQCAIIEADLTPGITIAGAGSGKTTVVSQRVL-YLVANGLVEPQ 62 Query: 64 TLLCLTHTKAAAAEMSHRV 82 ++ LT T AA EMS ++ Sbjct: 63 QIIGLTFTNKAAGEMSDKI 81 >gi|294778328|ref|ZP_06743753.1| putative ATP-dependent helicase PcrA [Bacteroides vulgatus PC510] gi|294447835|gb|EFG16410.1| putative ATP-dependent helicase PcrA [Bacteroides vulgatus PC510] Length = 796 Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 57/149 (38%), Gaps = 42/149 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT +L ++ LL P ++L LT T AA EM R+ + Sbjct: 25 VIAGAGSGKTRVLTYKIAYLLERGYTPWSILALTFTNKAAREMKERIARQVG-------- 76 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +AR+L + T H+ I++ TS Sbjct: 77 -------------------DQARYLWMG-----------TFHSIFSRILRCESQSIGFTS 106 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDN 184 +F I D SK LI KS + + LD+ Sbjct: 107 NFTIYDSSDSKSLI----KSIVKEMQLDD 131 >gi|282858994|ref|ZP_06268131.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010] gi|282588223|gb|EFB93391.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010] Length = 894 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 24/47 (51%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A G GKTHIL +R+ +LCLT T AA EM R+ Sbjct: 24 VLAPPGCGKTHILAERIKNARAEGVAFKDMLCLTFTNRAAREMESRI 70 >gi|259047692|ref|ZP_05738093.1| ATP-dependent DNA helicase PcrA [Granulicatella adiacens ATCC 49175] gi|259035883|gb|EEW37138.1| ATP-dependent DNA helicase PcrA [Granulicatella adiacens ATCC 49175] Length = 773 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ +L P +L +T T AA+EM RV ++ Sbjct: 28 VMAGAGSGKTRVLTHRMAYILAEEEVQPWNILAITFTNKAASEMKERVSALV 79 >gi|255973804|ref|ZP_05424390.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T2] gi|255966676|gb|EET97298.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T2] Length = 746 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ +P +L +T T AA EM RV Sbjct: 22 VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 69 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153 NK +LET G + V T H+ C I+++ + Sbjct: 70 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 102 Query: 154 TSHFAIADEEQSKKLIE 170 +F I D + K L++ Sbjct: 103 NRNFTIIDPSEQKTLMK 119 >gi|227517687|ref|ZP_03947736.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0104] gi|229546558|ref|ZP_04435283.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1322] gi|293385045|ref|ZP_06630879.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis R712] gi|293389316|ref|ZP_06633777.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis S613] gi|307272535|ref|ZP_07553788.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0855] gi|307274690|ref|ZP_07555862.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2134] gi|307296389|ref|ZP_07576213.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0411] gi|312904260|ref|ZP_07763422.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0635] gi|312906034|ref|ZP_07765047.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 512] gi|312909380|ref|ZP_07768236.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 516] gi|227074842|gb|EEI12805.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0104] gi|229308303|gb|EEN74290.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1322] gi|291077723|gb|EFE15087.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis R712] gi|291081338|gb|EFE18301.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis S613] gi|306496044|gb|EFM65629.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0411] gi|306508619|gb|EFM77717.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2134] gi|306510820|gb|EFM79837.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0855] gi|310628029|gb|EFQ11312.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 512] gi|310632356|gb|EFQ15639.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0635] gi|311290404|gb|EFQ68960.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 516] gi|315025780|gb|EFT37712.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2137] gi|315029104|gb|EFT41036.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4000] gi|315031452|gb|EFT43384.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0017] gi|315145224|gb|EFT89240.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2141] gi|315151577|gb|EFT95593.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0012] gi|315157733|gb|EFU01750.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0312] gi|315161923|gb|EFU05940.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0645] gi|315575349|gb|EFU87540.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0309B] gi|315578806|gb|EFU90997.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0630] gi|315581379|gb|EFU93570.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0309A] Length = 791 Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ +P +L +T T AA EM RV Sbjct: 67 VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153 NK +LET G + V T H+ C I+++ + Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147 Query: 154 TSHFAIADEEQSKKLIE 170 +F I D + K L++ Sbjct: 148 NRNFTIIDPSEQKTLMK 164 >gi|218258215|ref|ZP_03474617.1| hypothetical protein PRABACTJOHN_00271 [Parabacteroides johnsonii DSM 18315] gi|218225664|gb|EEC98314.1| hypothetical protein PRABACTJOHN_00271 [Parabacteroides johnsonii DSM 18315] Length = 1075 Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 14/134 (10%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII--TAWSHLSD 94 A+AG+GKTH L L LL +L +T T A EM R+++ + A SD Sbjct: 7 ASAGAGKTHKLTGEYLTLLFTGPGAFRRILAVTFTNKATDEMKTRIVDELYNLASGRKSD 66 Query: 95 --EILSA--EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 E+L++ +T+ Q +K +A +LI IL + TI F + M+ F E Sbjct: 67 YVELLTSTYSLTEDQVRK-------QAAKILIDILHDYSAFNISTIDRFFQQTMRAFTRE 119 Query: 151 ANITSHFAIADEEQ 164 + + I +++ Sbjct: 120 IGLQGGYGIEMDQE 133 >gi|213962690|ref|ZP_03390951.1| ATP-dependent DNA helicase PcrA [Capnocytophaga sputigena Capno] gi|213954685|gb|EEB66006.1| ATP-dependent DNA helicase PcrA [Capnocytophaga sputigena Capno] Length = 783 Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ +L LT T AA EM R+ +I+ Sbjct: 28 VIAGAGSGKTRVLTYRIANLMRQGVDAFHILALTFTNKAANEMKKRIADIV 78 >gi|262182885|ref|ZP_06042306.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] Length = 841 Score = 39.7 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 29/191 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI--------- 85 + A AGSGKT +L +R+ L+ P +L +T T AAAEM RV ++ Sbjct: 64 IVAGAGSGKTAVLTRRIAYLMRERGVAPWQILAITFTNKAAAEMKERVGQLVGPVAERMW 123 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIHAFCEAI 143 ++ + + IL + G N + D AR LL T++ L ++ A + Sbjct: 124 VSTFHSICVRILRNNAQLVPGLNTNFTIYDGDDARRLL-TMIAKDMQLDLKKYSA--RVL 180 Query: 144 MQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 Q N I+ A A+ E++K E T+AS+ + L+ A N Sbjct: 181 ANQISNRKNELISPEQARAEAERTKNPFE----ITVASVYEEYQRRLRAA--------NS 228 Query: 202 EDIETLISDII 212 D + LI +++ Sbjct: 229 VDFDDLIGEVV 239 >gi|228950057|ref|ZP_04112242.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809584|gb|EEM56020.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 702 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 A AGSGKT +L +V ++ +P+ ++ LT TK AA EM R+ ++ Sbjct: 80 AGAGSGKTSVLTSKVGYMMNYKQINPANIMILTFTKKAAEEMRSRISDL 128 >gi|170758795|ref|YP_001788588.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A3 str. Loch Maree] gi|169405784|gb|ACA54195.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A3 str. Loch Maree] Length = 738 Score = 39.7 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ ++ N +PS +L +T T AA EM R+ ++ Sbjct: 24 ILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFTNKAAGEMKERIKALV 75 >gi|315166930|gb|EFU10947.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1341] Length = 791 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ +P +L +T T AA EM RV Sbjct: 67 VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153 NK +LET G + V T H+ C I+++ + Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147 Query: 154 TSHFAIADEEQSKKLIE 170 +F I D + K L++ Sbjct: 148 NRNFTIIDPSEQKTLMK 164 >gi|238926784|ref|ZP_04658544.1| ATP-dependent DNA helicase [Selenomonas flueggei ATCC 43531] gi|238885316|gb|EEQ48954.1| ATP-dependent DNA helicase [Selenomonas flueggei ATCC 43531] Length = 746 Score = 39.7 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ LL P +L +T T AA EM RV +I Sbjct: 24 IVAGAGSGKTRVLTFRIANLLEHGVPPYRILAITFTNKAAREMRERVDTLI 74 >gi|227889452|ref|ZP_04007257.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii ATCC 33200] gi|227849930|gb|EEJ60016.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii ATCC 33200] Length = 772 Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L +R+ L+ P +L +T T AA EM RV +++ Sbjct: 51 VVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLL 102 >gi|199597352|ref|ZP_03210783.1| Superfamily I DNA and RNA helicase [Lactobacillus rhamnosus HN001] gi|199591868|gb|EDY99943.1| Superfamily I DNA and RNA helicase [Lactobacillus rhamnosus HN001] Length = 750 Score = 39.7 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 3/71 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 ++ ++E +LA++ + A AGSGKT +L R+ L+ N +P +L +T T AA Sbjct: 10 MNDKQAEAVLATEG--PVLIMAGAGSGKTRVLTHRIAYLVEEKNVNPWNILAITFTNKAA 67 Query: 76 AEMSHRVLEII 86 EM RV +++ Sbjct: 68 REMRERVGKLV 78 >gi|42519596|ref|NP_965526.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii NCC 533] gi|41583885|gb|AAS09492.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii NCC 533] Length = 748 Score = 39.7 bits (91), Expect = 0.41, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L +R+ L+ P +L +T T AA+EM RV Sbjct: 27 VVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAASEMKERV------------ 74 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 K+ G + MS T HA C I+++ + + Sbjct: 75 -------QKLLGPAADSVWMS-------------------TFHALCVRILRRDAKKIGYS 108 Query: 155 SHFAIADEEQSKKLIEEAKK 174 ++F+IAD + LI+ +K Sbjct: 109 NNFSIADSAEQLTLIKRIEK 128 >gi|258508010|ref|YP_003170761.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus GG] gi|257147937|emb|CAR86910.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus GG] gi|259649338|dbj|BAI41500.1| DNA helicase [Lactobacillus rhamnosus GG] Length = 750 Score = 39.3 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 3/71 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 ++ ++E +LA++ + A AGSGKT +L R+ L+ N +P +L +T T AA Sbjct: 10 MNDKQAEAVLATEG--PVLIMAGAGSGKTRVLTHRIAYLVEEKNVNPWNILAITFTNKAA 67 Query: 76 AEMSHRVLEII 86 EM RV +++ Sbjct: 68 REMRERVGKLV 78 >gi|229551867|ref|ZP_04440592.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus LMS2-1] gi|258539285|ref|YP_003173784.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus Lc 705] gi|229314811|gb|EEN80784.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus LMS2-1] gi|257150961|emb|CAR89933.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus Lc 705] Length = 750 Score = 39.3 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 3/71 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 ++ ++E +LA++ + A AGSGKT +L R+ L+ N +P +L +T T AA Sbjct: 10 MNDKQAEAVLATEG--PVLIMAGAGSGKTRVLTHRIAYLVEEKNVNPWNILAITFTNKAA 67 Query: 76 AEMSHRVLEII 86 EM RV +++ Sbjct: 68 REMRERVGKLV 78 >gi|58578906|ref|YP_197118.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden] gi|58417532|emb|CAI26736.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden] Length = 639 Score = 39.3 bits (90), Expect = 0.41, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AG+GKT + R+ +L N A PS +L +T T AA EM R+ E+ A Sbjct: 27 AGAGTGKTRTMTSRIAYVLNNNFALPSQILAVTFTNKAANEMLSRINELTCA 78 >gi|84516406|ref|ZP_01003765.1| putative uvrD/DNA Helicase II [Loktanella vestfoldensis SKA53] gi|84509442|gb|EAQ05900.1| putative uvrD/DNA Helicase II [Loktanella vestfoldensis SKA53] Length = 797 Score = 39.3 bits (90), Expect = 0.41, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AG+GKT L R+ +L +A P +L +T T AA EM HR+ ++ Sbjct: 52 AGAGTGKTKALTSRIAHVLATRSARPQEVLAVTFTNKAAREMKHRIAALM 101 >gi|311898256|dbj|BAJ30664.1| putative ATP-dependent DNA helicase [Kitasatospora setae KM-6054] Length = 1073 Score = 39.3 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Query: 23 EQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSH 80 EQ+ A P + A AGSGKT ++ RV+ L+ + A P +L LT T AA E++ Sbjct: 24 EQVAAIGAPMAPGVIVAGAGSGKTTVMAARVVWLVGSGAVRPEQVLGLTFTNKAAGELAE 83 Query: 81 RV 82 RV Sbjct: 84 RV 85 >gi|291447590|ref|ZP_06586980.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998] gi|291350537|gb|EFE77441.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998] Length = 1201 Score = 39.3 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 35/154 (22%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + A AGSGKT ++ RV+ L+ P +L LT T AA E++ RV + + A Sbjct: 40 PPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAAGELAERVRKALIA 99 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 A +T P+ PG + T HAF ++ + Sbjct: 100 ----------AGVTDPDVIDPDNP---------------PGEPTISTYHAFAGRLLTEHG 134 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 L + E S +L+ +A + LA+ +L Sbjct: 135 LRIGL---------EPSTRLLADATRYQLAAKVL 159 >gi|257784187|ref|YP_003179404.1| UvrD/REP helicase [Atopobium parvulum DSM 20469] gi|257472694|gb|ACV50813.1| UvrD/REP helicase [Atopobium parvulum DSM 20469] Length = 812 Score = 39.3 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 43/149 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ ++ P +L +T T AAAEM R+ ++ Sbjct: 25 VLAGAGSGKTRVLTFRIAHMIADEGVRPWQVLAITFTNKAAAEMRERLEALL-------- 76 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 PN G+ V T HA C ++++ Sbjct: 77 --------------PNNIR----------------GMWVCTFHAMCVRLLREDGDRLGYG 106 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLD 183 +FAI D++ SK+L+ K+ L+ + +D Sbjct: 107 PNFAIYDDDDSKRLV----KAILSDLDID 131 >gi|57238970|ref|YP_180106.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden] gi|57161049|emb|CAH57956.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden] Length = 639 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AG+GKT + R+ +L N A PS +L +T T AA EM R+ E+ A Sbjct: 27 AGAGTGKTRTITSRIAYILNNNFALPSQILAVTFTNKAANEMLSRINELTCA 78 >gi|315172193|gb|EFU16210.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1346] Length = 791 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ +P +L +T T AA EM RV Sbjct: 67 VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153 NK +LET G + V T H+ C I+++ + Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147 Query: 154 TSHFAIADEEQSKKLIE 170 +F I D + K L++ Sbjct: 148 NRNFTIIDPSEQKTLMK 164 >gi|291539996|emb|CBL13107.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis XB6B4] Length = 755 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A AGSGKT +L R L+ +P ++ +T T AA EM R+ +I+ S Sbjct: 34 AGAGSGKTRVLTHRTAYLIEEKGVNPYHIMAITFTNKAAGEMRERIDKIVGFGS 87 >gi|293365449|ref|ZP_06612158.1| ATP-dependent exonuclease RexA [Streptococcus oralis ATCC 35037] gi|291315817|gb|EFE56261.1| ATP-dependent exonuclease RexA [Streptococcus oralis ATCC 35037] Length = 1217 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERL 91 >gi|282866610|ref|ZP_06275652.1| UvrD/REP helicase [Streptomyces sp. ACTE] gi|282558512|gb|EFB64072.1| UvrD/REP helicase [Streptomyces sp. ACTE] Length = 1164 Score = 39.3 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 35/167 (20%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T AA Sbjct: 25 IPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 84 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E++ RV + + A A +T P+ PG + T Sbjct: 85 GELAERVRKALVA----------AGVTDPDVIDPDNP---------------PGEPSIST 119 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 HAF ++ + L + E + +L+ +A + LA+ +L Sbjct: 120 YHAFAGRLLTEHGLRIGL---------EPTTRLLADATRYQLAARVL 157 >gi|239944122|ref|ZP_04696059.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998] gi|239990574|ref|ZP_04711238.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 11379] Length = 1191 Score = 39.3 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 35/154 (22%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + A AGSGKT ++ RV+ L+ P +L LT T AA E++ RV + + A Sbjct: 30 PPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAAGELAERVRKALIA 89 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 A +T P+ PG + T HAF ++ + Sbjct: 90 ----------AGVTDPDVIDPDNP---------------PGEPTISTYHAFAGRLLTEHG 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 L + E S +L+ +A + LA+ +L Sbjct: 125 LRIGL---------EPSTRLLADATRYQLAAKVL 149 >gi|153939400|ref|YP_001392617.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum F str. Langeland] gi|152935296|gb|ABS40794.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum F str. Langeland] Length = 738 Score = 39.3 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ ++ N +PS +L +T T AA EM R+ ++ Sbjct: 24 ILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFTNKAAGEMKERIKALV 75 >gi|304436816|ref|ZP_07396782.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370188|gb|EFM23847.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 746 Score = 39.3 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ LL P +L +T T AA EM RV +I Sbjct: 24 IVAGAGSGKTRVLTFRIANLLEHGVPPYRILAITFTNKAAREMRERVDALI 74 >gi|227541926|ref|ZP_03971975.1| superfamily I ATP-dependent helicase [Corynebacterium glucuronolyticum ATCC 51866] gi|227182369|gb|EEI63341.1| superfamily I ATP-dependent helicase [Corynebacterium glucuronolyticum ATCC 51866] Length = 686 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTH 70 E+ L +++ A+ P + A AG+GKT + R+ L+ A P +L +T Sbjct: 4 ESFSLEDLDPDQRVAATAPRGPVCILAGAGTGKTRTITYRIAHLINTGAVSPQRVLAVTF 63 Query: 71 TKAAAAEMSHRV 82 TK AA EM R+ Sbjct: 64 TKRAAGEMRDRL 75 >gi|330429634|gb|AEC20968.1| ATP-dependent DNA helicase [Pusillimonas sp. T7-7] Length = 717 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++ Q++ LL + + ++ LT T AA EMS RV +++ Sbjct: 30 VLAGAGSGKTRVITQKIAYLLRECGYQARQVVALTFTNKAAREMSERVKQLVDG 83 >gi|317472670|ref|ZP_07931985.1| ATP-dependent DNA helicase PcrA [Anaerostipes sp. 3_2_56FAA] gi|316899847|gb|EFV21846.1| ATP-dependent DNA helicase PcrA [Anaerostipes sp. 3_2_56FAA] Length = 735 Score = 39.3 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 26/45 (57%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ L+ +P ++ +T T AA EM RV Sbjct: 26 AGAGSGKTRVLTHRIAYLIEQGVNPYHIMAITFTNKAAREMRERV 70 >gi|291537470|emb|CBL10582.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis M50/1] Length = 747 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A AGSGKT +L R L+ +P ++ +T T AA EM R+ +I+ S Sbjct: 26 AGAGSGKTRVLTHRTAYLIEEKGVNPYHIMAITFTNKAAGEMRERIDKIVGFGS 79 >gi|257420982|ref|ZP_05597972.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis X98] gi|257162806|gb|EEU92766.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis X98] Length = 752 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ +P +L +T T AA EM RV Sbjct: 28 VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153 NK +LET G + V T H+ C I+++ + Sbjct: 76 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 108 Query: 154 TSHFAIADEEQSKKLIE 170 +F I D + K L++ Sbjct: 109 NRNFTIIDPSEQKTLMK 125 >gi|241760514|ref|ZP_04758607.1| ATP-dependent DNA helicase Rep [Neisseria flavescens SK114] gi|241319018|gb|EER55520.1| ATP-dependent DNA helicase Rep [Neisseria flavescens SK114] Length = 666 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 11/84 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEI--------- 85 V A AGSGKT ++ Q++ L++ + P T+ +T T AA EM RV ++ Sbjct: 20 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAATEMQERVSKMLPKSQTRGL 79 Query: 86 -ITAWSHLSDEILSAEITKIQGKK 108 I + L +IL E +I KK Sbjct: 80 TICTFHSLGMKILREEANQIGYKK 103 >gi|261380715|ref|ZP_05985288.1| ATP-dependent DNA helicase Rep [Neisseria subflava NJ9703] gi|284796427|gb|EFC51774.1| ATP-dependent DNA helicase Rep [Neisseria subflava NJ9703] Length = 666 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 11/84 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEI--------- 85 V A AGSGKT ++ Q++ L++ + P T+ +T T AA EM RV ++ Sbjct: 20 VLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAATEMQERVSKMLPKSQTRGL 79 Query: 86 -ITAWSHLSDEILSAEITKIQGKK 108 I + L +IL E +I KK Sbjct: 80 TICTFHSLGMKILREEANQIGYKK 103 >gi|58336855|ref|YP_193440.1| ATP-dependent helicase [Lactobacillus acidophilus NCFM] gi|227903414|ref|ZP_04021219.1| ATP-dependent helicase [Lactobacillus acidophilus ATCC 4796] gi|58254172|gb|AAV42409.1| ATP-dependent helicase [Lactobacillus acidophilus NCFM] gi|227868890|gb|EEJ76311.1| ATP-dependent helicase [Lactobacillus acidophilus ATCC 4796] Length = 746 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L +R+ L+ N P +L +T T AA+EM R +++ Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEENNVAPWNILAITFTNKAASEMREREQDLL 78 >gi|15605339|ref|NP_220125.1| DNA helicase [Chlamydia trachomatis D/UW-3/CX] gi|76789347|ref|YP_328433.1| DNA helicase [Chlamydia trachomatis A/HAR-13] gi|237804958|ref|YP_002889112.1| DNA helicase [Chlamydia trachomatis B/TZ1A828/OT] gi|3329053|gb|AAC68211.1| DNA Helicase [Chlamydia trachomatis D/UW-3/CX] gi|76167877|gb|AAX50885.1| DNA helicase [Chlamydia trachomatis A/HAR-13] gi|231273258|emb|CAX10173.1| DNA helicase [Chlamydia trachomatis B/TZ1A828/OT] gi|296436144|gb|ADH18318.1| DNA helicase [Chlamydia trachomatis G/9768] gi|296437072|gb|ADH19242.1| DNA helicase [Chlamydia trachomatis G/11222] gi|296438004|gb|ADH20165.1| DNA helicase [Chlamydia trachomatis G/11074] gi|297140506|gb|ADH97264.1| DNA helicase [Chlamydia trachomatis G/9301] gi|297748738|gb|ADI51284.1| PcrA [Chlamydia trachomatis D-EC] gi|297749618|gb|ADI52296.1| PcrA [Chlamydia trachomatis D-LC] Length = 634 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L S+ + Q+ A + P + V A AG+GKT ++ R+L L+ + P +L +T T Sbjct: 2 LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILYLIEESRLDPKQILAITFTNK 61 Query: 74 AAAEMSHRV 82 AA E+ RV Sbjct: 62 AANELKERV 70 >gi|84494604|ref|ZP_00993723.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649] gi|84384097|gb|EAP99977.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649] Length = 729 Score = 39.3 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLE 84 +A++PT V A AG+GKT + R+ +L+ A P L +T T AA EM R+ + Sbjct: 24 VAANPTGPMVVLAGAGTGKTRAITHRIAYAVLSGAQQPQRTLAVTFTARAAGEMRTRLRD 83 Query: 85 I 85 + Sbjct: 84 L 84 >gi|237749150|ref|ZP_04579630.1| DNA helicase II/ATP-dependent DNA helicase [Oxalobacter formigenes OXCC13] gi|229380512|gb|EEO30603.1| DNA helicase II/ATP-dependent DNA helicase [Oxalobacter formigenes OXCC13] Length = 757 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 ++ EQL A + P++SA + A AGSGKT +L R+ LL S ++ +T T Sbjct: 4 ILDNLNPEQLAAVTLPSQSALILAGAGSGKTRVLTTRIAWLLKTGQVSTSGIMAVTFTNK 63 Query: 74 AAAEMSHRV 82 AA EM R+ Sbjct: 64 AAKEMLSRL 72 >gi|239631845|ref|ZP_04674876.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526310|gb|EEQ65311.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 751 Score = 39.3 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 ++ +SE +LA++ + A AGSGKT +L R+ L+ + +P +L +T T AA Sbjct: 10 MNDKQSEAVLATEG--PVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFTNKAA 67 Query: 76 AEMSHRVLEIITA 88 EM RV +++ A Sbjct: 68 REMRERVGKLVDA 80 >gi|191637996|ref|YP_001987162.1| ATP-dependent DNA helicase [Lactobacillus casei BL23] gi|190712298|emb|CAQ66304.1| ATP-dependent DNA helicase [Lactobacillus casei BL23] gi|327382072|gb|AEA53548.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei LC2W] gi|327385216|gb|AEA56690.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei BD-II] Length = 751 Score = 39.3 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 ++ +SE +LA++ + A AGSGKT +L R+ L+ + +P +L +T T AA Sbjct: 10 MNDKQSEAVLATEG--PVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFTNKAA 67 Query: 76 AEMSHRVLEIITA 88 EM RV +++ A Sbjct: 68 REMRERVGKLVDA 80 >gi|116494556|ref|YP_806290.1| superfamily I DNA/RNA helicase [Lactobacillus casei ATCC 334] gi|116104706|gb|ABJ69848.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei ATCC 334] Length = 751 Score = 39.3 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 ++ +SE +LA++ + A AGSGKT +L R+ L+ + +P +L +T T AA Sbjct: 10 MNDKQSEAVLATEG--PVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFTNKAA 67 Query: 76 AEMSHRVLEIITA 88 EM RV +++ A Sbjct: 68 REMRERVGKLVDA 80 >gi|329667843|gb|AEB93791.1| ATP-dependent DNA helicase [Lactobacillus johnsonii DPC 6026] Length = 748 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L +R+ L+ P +L +T T AA EM RV +++ Sbjct: 27 VVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLL 78 >gi|322389861|ref|ZP_08063402.1| exonuclease RexA [Streptococcus parasanguinis ATCC 903] gi|321143442|gb|EFX38879.1| exonuclease RexA [Streptococcus parasanguinis ATCC 903] Length = 1221 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 40/186 (21%), Positives = 69/186 (37%), Gaps = 33/186 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++VQR+L + L T T AA E+ R Sbjct: 45 VSASAGSGKTFVMVQRILDQMQRGISIKELFISTFTVKAAGELKER-------------- 90 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 L +E+ GK SD + + L + + T+ +F + ++ ++ + Sbjct: 91 -LESEL----GKALQASDDPELKQHLARQIADVATSDIGTMDSFTQKVLTRYGYLLGLAP 145 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215 F I ++L++ NE + F + N E ++ + R Sbjct: 146 QFRILQNASEQRLLQ--------------NEVFQAVFDRYYQGENQEAFVQMVKNFTGQR 191 Query: 216 TALKLI 221 L L Sbjct: 192 KNLTLF 197 >gi|312867393|ref|ZP_07727602.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis F0405] gi|311097094|gb|EFQ55329.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis F0405] Length = 1221 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 40/186 (21%), Positives = 69/186 (37%), Gaps = 33/186 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++VQR+L + L T T AA E+ R Sbjct: 45 VSASAGSGKTFVMVQRILDQMQRGISIKELFISTFTVKAAGELKER-------------- 90 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 L +E+ GK SD + + L + + T+ +F + ++ ++ + Sbjct: 91 -LESEL----GKALQASDDPELKQHLARQIADVATSDIGTMDSFTQKVLTRYGYLLGLAP 145 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215 F I ++L++ NE + F + N E ++ + R Sbjct: 146 QFRILQNASEQRLLQ--------------NEVFQAVFDRYYQGENQEAFVQMVKNFTGQR 191 Query: 216 TALKLI 221 L L Sbjct: 192 KNLTLF 197 >gi|310780023|ref|YP_003968355.1| UvrD/REP helicase [Ilyobacter polytropus DSM 2926] gi|309749346|gb|ADO84007.1| UvrD/REP helicase [Ilyobacter polytropus DSM 2926] Length = 1041 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 8/135 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI---ITAWSHL 92 + A+AG+GKT+ L + LL + ++ LT T+ A E+ R+L IT Sbjct: 7 LKASAGTGKTYRLSLEYIASLLLGENFQEIMVLTFTRKATGEIRERILSFLKEITTDGED 66 Query: 93 SDEILSAEITKIQGKKPN-KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 + EI + I+ P+ D K + I++ LK+ TI +F I ++ + Sbjct: 67 AQEI----VENIKKLYPDLVVDTEKLVDVYSEIMKNKDRLKIHTIDSFTNIIFKKSIAPS 122 Query: 152 NITSHFAIADEEQSK 166 + I D++++K Sbjct: 123 LGIYSYEIIDDDRNK 137 >gi|259506511|ref|ZP_05749413.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314] gi|259165931|gb|EEW50485.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314] Length = 677 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 I+L + +++ A+ P + A AG+GKT + R+ L+ P+ +L +T T Sbjct: 2 INLQDLDEDQRIAATAPRGPVCILAGAGTGKTRTITYRIAHLIDQGFVSPNRVLAVTFTS 61 Query: 73 AAAAEMSHRV 82 AA EM HR+ Sbjct: 62 RAAGEMRHRL 71 >gi|255321476|ref|ZP_05362634.1| ATP-dependent DNA helicase PcrA [Campylobacter showae RM3277] gi|255301332|gb|EET80591.1| ATP-dependent DNA helicase PcrA [Campylobacter showae RM3277] Length = 694 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL+ + Q A+ T A + A AGSGKT + R+ L+ PS L LT T Sbjct: 3 DLLDELNESQREAASHTDGAMLILAGAGSGKTKTITTRLAYLISELGIPPSNTLTLTFTN 62 Query: 73 AAAAEMSHRVLEII 86 AA+EM R L+++ Sbjct: 63 KAASEMRARALKML 76 >gi|89891413|ref|ZP_01202919.1| DNA helicase [Flavobacteria bacterium BBFL7] gi|89516444|gb|EAS19105.1| DNA helicase [Flavobacteria bacterium BBFL7] Length = 775 Score = 39.3 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ +L LT T AA EM R+ +I+ Sbjct: 25 VIAGAGSGKTRVLTLRIAYLMQQGVDAFNILSLTFTNKAAREMKKRIADIV 75 >gi|30248124|ref|NP_840194.1| recQ; ATP-dependent DNA helicase [Nitrosomonas europaea ATCC 19718] gi|30180009|emb|CAD84004.1| recQ; ATP-dependent DNA helicase [Nitrosomonas europaea ATCC 19718] Length = 1457 Score = 39.3 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEM 78 T + ++A D + V A GSGKT ++V R+ LL P+T ++ LT + AA E+ Sbjct: 850 TTQKLIVADDDDINRLVLAGPGSGKTRVIVHRIAYLLRVRRVPATSIVALTFNRHAANEI 909 Query: 79 SHRVLEIITA 88 R+L ++ A Sbjct: 910 RKRLLALVGA 919 >gi|189499756|ref|YP_001959226.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1] gi|189495197|gb|ACE03745.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1] Length = 735 Score = 39.3 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 62/163 (38%), Gaps = 39/163 (23%) Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 ID++ Q Q A T V A AGSGKT ++ R+ L+ P +L LT T Sbjct: 2 IDILEQLNDVQQQAVQKTDGPVMVLAGAGSGKTRVITYRLAYLIGQKQVAPHQILALTFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ DE+L P S GL Sbjct: 62 NKAANEMRQRI-----------DELL----------HPGSSR----------------GL 84 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + T H+ +++ + +F+I D + SK LI + K Sbjct: 85 WIGTFHSIFARLLRNYIHLIGYDGNFSIYDSDDSKSLIRQVMK 127 >gi|225388765|ref|ZP_03758489.1| hypothetical protein CLOSTASPAR_02501 [Clostridium asparagiforme DSM 15981] gi|225045172|gb|EEG55418.1| hypothetical protein CLOSTASPAR_02501 [Clostridium asparagiforme DSM 15981] Length = 609 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTKAAAAEMSHR 81 A + A GSGKT ++ R+ R L +PS++L +T T+AAA EM R Sbjct: 18 ALILAGPGSGKTTVITNRI-RFLTEEEGVNPSSILVITFTRAAATEMQKR 66 >gi|167748917|ref|ZP_02421044.1| hypothetical protein ANACAC_03698 [Anaerostipes caccae DSM 14662] gi|167651539|gb|EDR95668.1| hypothetical protein ANACAC_03698 [Anaerostipes caccae DSM 14662] Length = 735 Score = 39.3 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 26/45 (57%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ L+ +P ++ +T T AA EM RV Sbjct: 26 AGAGSGKTRVLTHRIAYLIEQGVNPYHIMAITFTNKAAREMRERV 70 >gi|160942246|ref|ZP_02089555.1| hypothetical protein CLOBOL_07132 [Clostridium bolteae ATCC BAA-613] gi|158434803|gb|EDP12570.1| hypothetical protein CLOBOL_07132 [Clostridium bolteae ATCC BAA-613] Length = 780 Score = 39.3 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 39/141 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L RV L+ +P +L +T T AA EM RV +++ Sbjct: 24 ILAGAGSGKTRVLTHRVAYLIEEKQVNPWNILAITFTNKAAGEMRERVDQLVG------- 76 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 AE + V T H+ C I+++ T Sbjct: 77 --FGAE-----------------------------SIWVSTFHSTCVRILRRHIEYLGYT 105 Query: 155 SHFAIADEEQSKKLIEEAKKS 175 ++F+I D + K L+++ K+ Sbjct: 106 TNFSIYDSDDQKTLMKQVFKA 126 >gi|29375317|ref|NP_814471.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis V583] gi|256617608|ref|ZP_05474454.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 4200] gi|256854412|ref|ZP_05559776.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T8] gi|256959857|ref|ZP_05564028.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Merz96] gi|256964441|ref|ZP_05568612.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis HIP11704] gi|257083649|ref|ZP_05578010.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Fly1] gi|257086081|ref|ZP_05580442.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis D6] gi|257089148|ref|ZP_05583509.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis CH188] gi|257415291|ref|ZP_05592285.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis AR01/DG] gi|257418333|ref|ZP_05595327.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis T11] gi|300861762|ref|ZP_07107842.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TUSoD Ef11] gi|29342777|gb|AAO80541.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis V583] gi|256597135|gb|EEU16311.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 4200] gi|256709972|gb|EEU25016.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T8] gi|256950353|gb|EEU66985.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Merz96] gi|256954937|gb|EEU71569.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis HIP11704] gi|256991679|gb|EEU78981.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Fly1] gi|256994111|gb|EEU81413.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis D6] gi|256997960|gb|EEU84480.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis CH188] gi|257157119|gb|EEU87079.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ARO1/DG] gi|257160161|gb|EEU90121.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis T11] gi|300848287|gb|EFK76044.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TUSoD Ef11] Length = 752 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ +P +L +T T AA EM RV Sbjct: 28 VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153 NK +LET G + V T H+ C I+++ + Sbjct: 76 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 108 Query: 154 TSHFAIADEEQSKKLIE 170 +F I D + K L++ Sbjct: 109 NRNFTIIDPSEQKTLMK 125 >gi|323698557|ref|ZP_08110469.1| UvrD/REP helicase [Desulfovibrio sp. ND132] gi|323458489|gb|EGB14354.1| UvrD/REP helicase [Desulfovibrio desulfuricans ND132] Length = 1032 Score = 39.3 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A G+GKT L+ RV RL+ +P +L LT T+ AA E+ R+ Sbjct: 479 VLAGPGTGKTQTLMGRVERLMDEGVNPKRILALTFTRRAAQELRDRL 525 >gi|257080987|ref|ZP_05575348.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis E1Sol] gi|256989017|gb|EEU76319.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis E1Sol] Length = 752 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ +P +L +T T AA EM RV Sbjct: 28 VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153 NK +LET G + V T H+ C I+++ + Sbjct: 76 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 108 Query: 154 TSHFAIADEEQSKKLIE 170 +F I D + K L++ Sbjct: 109 NRNFTIIDPSEQKTLMK 125 >gi|237803037|ref|YP_002888231.1| DNA helicase [Chlamydia trachomatis B/Jali20/OT] gi|231274271|emb|CAX11066.1| DNA helicase [Chlamydia trachomatis B/Jali20/OT] Length = 634 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L S+ + Q+ A + P + V A AG+GKT ++ R+L L+ + P +L +T T Sbjct: 2 LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILYLIEESRLDPKQILAITFTNK 61 Query: 74 AAAEMSHRV 82 AA E+ RV Sbjct: 62 AANELKERV 70 >gi|240146225|ref|ZP_04744826.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis L1-82] gi|257201636|gb|EEU99920.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis L1-82] Length = 755 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A AGSGKT +L R L+ +P ++ +T T AA EM R+ +I+ S Sbjct: 34 AGAGSGKTRVLTHRTAYLIEEKGVNPYHIMAITFTNKAAGEMRERIDKIVGFGS 87 >gi|197335191|ref|YP_002156443.1| helicase IV [Vibrio fischeri MJ11] gi|197316681|gb|ACH66128.1| helicase IV [Vibrio fischeri MJ11] Length = 687 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 4/80 (5%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 +F E+ L +S LL D T V A AGSGKT +LV RV L+ + A Sbjct: 187 TFFSECESQPLNESQQSALLLNEDHTL---VLAGAGSGKTSVLVARVNYLIQSGQAQADE 243 Query: 65 LLCLTHTKAAAAEMSHRVLE 84 +L L + AA EMS R+++ Sbjct: 244 ILLLAFGRQAAQEMSGRIID 263 >gi|126668208|ref|ZP_01739169.1| exodeoxyribonuclease V, beta subunit [Marinobacter sp. ELB17] gi|126627357|gb|EAZ97993.1| exodeoxyribonuclease V, beta subunit [Marinobacter sp. ELB17] Length = 1241 Score = 39.3 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 22/159 (13%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPS-----------TLLCLTHTKAAAAEMSHR 81 S + A+AG+GKT + +RL+L + P LL +T T AA E+ R Sbjct: 21 STLIEASAGTGKTFTIAILYVRLVLGHGQPEGGALAAGLVPPNLLVVTFTDAATKELRDR 80 Query: 82 VLEIITAWSHLSDEIL-----SAEITKIQGKK----PNKSDMSKARHLLITILETPGGLK 132 + +T + + + +AE I + P+ + R L+ E Sbjct: 81 IRIRLTQAAEVFSNVAGNTTPTAETALIHQLRDDSYPDPATWPDCRKKLLLAAEWMDEAA 140 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 V TIHA+C ++ + ++ S F + E L++E Sbjct: 141 VSTIHAWCNRMLSEHAFDSG--SLFRLTLETDQSSLMDE 177 >gi|89099734|ref|ZP_01172607.1| YjcD [Bacillus sp. NRRL B-14911] gi|89085481|gb|EAR64609.1| YjcD [Bacillus sp. NRRL B-14911] Length = 761 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R +L P +++ +T T AAAEM R+++ S + Sbjct: 158 VLAGAGSGKTRVLTTRTAYMLQELRIDPKSIMLVTFTAKAAAEMKRRLIDYPGIKSAQAQ 217 Query: 95 EILSA 99 ++L+ Sbjct: 218 QLLAG 222 >gi|302553996|ref|ZP_07306338.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM 40736] gi|302471614|gb|EFL34707.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM 40736] Length = 1044 Score = 39.3 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 35/167 (20%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T AA Sbjct: 25 IPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 84 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AE++ RV + ++ A +T P+ PG + T Sbjct: 85 AELAERVRK----------ALVKAGVTDPDAIDPDNP---------------PGEPVIST 119 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 HAF ++ L + E + +L+ +A + LA+ +L Sbjct: 120 YHAFAGRLLTDHGLRIGL---------EPTSRLLADATRFQLAARVL 157 >gi|300722702|ref|YP_003711992.1| putative UvrD/REP helicase [Xenorhabdus nematophila ATCC 19061] gi|297629209|emb|CBJ89806.1| putative UvrD/REP helicase [Xenorhabdus nematophila ATCC 19061] Length = 631 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT +L +RV R L+ N ++ LT + AA EM R+ ++ Sbjct: 22 VLAAAGSGKTRVLTERV-RYLIENTRKDGIIALTFSNKAAEEMQIRLADL 70 >gi|261335293|emb|CBH18287.1| ATP-dependent DNA helicase, putative [Trypanosoma brucei gambiense DAL972] Length = 845 Score = 39.3 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Query: 12 ETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 E ++S + Q +A +P++ + A AGSGKT + R+ L+L N P +L L Sbjct: 23 EIEQILSALDNSQRVAVCENPSQPLLIIAGAGSGKTLTMASRIAFLILNNVAPQNILGLC 82 Query: 70 HTKAAAAEMSHRVLEII 86 ++ AA + RV ++ Sbjct: 83 FSRQAAETLRGRVASVL 99 >gi|238757661|ref|ZP_04618845.1| Helicase IV (75 kDa helicase) [Yersinia aldovae ATCC 35236] gi|238704166|gb|EEP96699.1| Helicase IV (75 kDa helicase) [Yersinia aldovae ATCC 35236] Length = 684 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 1 MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59 ++ + F + ET L +S++ + S V A AGSGKT +LV R LL N Sbjct: 182 LVEYQDFFQQVETSPL---NESQRRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNE 238 Query: 60 AHPSTLLCLTHTKAAAAEMSHRV 82 A P +L L + AA EM+ R+ Sbjct: 239 ALPEQILLLAFGRQAADEMNSRI 261 >gi|300361106|ref|ZP_07057283.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri JV-V03] gi|300353725|gb|EFJ69596.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri JV-V03] Length = 757 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L +R+ L+ P +L +T T AA EM RV +++ Sbjct: 37 VVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLL 88 >gi|187939873|gb|ACD39011.1| helicase-related protein [Pseudomonas aeruginosa] Length = 1126 Score = 39.3 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 5/59 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV-----LEIITAW 89 + A G+GKT LV RV LL P +L LT + A+AEM+ R+ LE W Sbjct: 214 LQAGPGTGKTRTLVARVENLLDEGVDPRRILLLTFSNRASAEMAERIARKRPLEAAALW 272 >gi|83816462|ref|YP_444656.1| ATP-dependent DNA helicase [Salinibacter ruber DSM 13855] gi|83757856|gb|ABC45969.1| ATP-dependent DNA helicase [Salinibacter ruber DSM 13855] Length = 712 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 38/126 (30%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A AG+GKT L+ R+ L+ P ++ LT T+ AA +M+ R + Sbjct: 46 IVAGAGTGKTRTLIYRLAYLVETGTRPQQIVLLTFTRRAANDMTAR-----------ASN 94 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +L K++G T HAFC +++Q Sbjct: 95 LLDGRCEKVRGG---------------------------TFHAFCLEVLRQHAEALGFPR 127 Query: 156 HFAIAD 161 +F + D Sbjct: 128 NFTVLD 133 >gi|74025512|ref|XP_829322.1| ATP-dependent DNA helicase [Trypanosoma brucei TREU927] gi|70834708|gb|EAN80210.1| ATP-dependent DNA helicase, putative [Trypanosoma brucei] Length = 843 Score = 39.3 bits (90), Expect = 0.44, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Query: 12 ETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 E ++S + Q +A +P++ + A AGSGKT + R+ L+L N P +L L Sbjct: 23 EIEQILSALDNSQRVAVCENPSQPLLIIAGAGSGKTLTMASRIAFLILNNVAPQNILGLC 82 Query: 70 HTKAAAAEMSHRVLEII 86 ++ AA + RV ++ Sbjct: 83 FSRQAAETLRGRVASVL 99 >gi|268319977|ref|YP_003293633.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii FI9785] gi|262398352|emb|CAX67366.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii FI9785] Length = 748 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L +R+ L+ P +L +T T AA EM RV +++ Sbjct: 27 VVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLL 78 >gi|227832630|ref|YP_002834337.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] gi|227453646|gb|ACP32399.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] Length = 852 Score = 39.3 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 29/191 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI--------- 85 + A AGSGKT +L +R+ L+ P +L +T T AAAEM RV ++ Sbjct: 75 IVAGAGSGKTAVLTRRIAYLMRERGVAPWQILAITFTNKAAAEMKERVGQLVGPVAERMW 134 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIHAFCEAI 143 ++ + + IL + G N + D AR LL T++ L ++ A + Sbjct: 135 VSTFHSICVRILRNNAQLVPGLNTNFTIYDGDDARRLL-TMIAKDMQLDLKKYSA--RVL 191 Query: 144 MQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 Q N I+ A A+ E++K E T+AS+ + L+ A N Sbjct: 192 ANQISNRKNELISPEQARAEAERTKNPFE----ITVASVYEEYQRRLRAA--------NS 239 Query: 202 EDIETLISDII 212 D + LI +++ Sbjct: 240 VDFDDLIGEVV 250 >gi|239814543|ref|YP_002943453.1| UvrD/REP helicase [Variovorax paradoxus S110] gi|239801120|gb|ACS18187.1| UvrD/REP helicase [Variovorax paradoxus S110] Length = 809 Score = 39.3 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ EQ A + P +A + A AGSGKT +L R+ LL P +L +T T Sbjct: 23 LLANLNPEQRAAVTLPAGNALILAGAGSGKTRVLTTRIAWLLQTGQVSPGGILAVTFTNK 82 Query: 74 AAAEMSHRVLEII 86 AA EM R+ ++ Sbjct: 83 AAKEMMTRLTAML 95 >gi|152978852|ref|YP_001344481.1| exodeoxyribonuclease V, beta subunit [Actinobacillus succinogenes 130Z] gi|150840575|gb|ABR74546.1| exodeoxyribonuclease V, beta subunit [Actinobacillus succinogenes 130Z] Length = 1227 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 26/148 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLL-----ANAHPST---LLCLTHTKAAAAEMSHRV----- 82 + A+AG+GKT + LRLLL A + P T +L +T T+A+ E+ R+ Sbjct: 19 IEASAGTGKTFTMASLYLRLLLQAGDNAFSVPLTVEQILVVTFTEASTEELKERIRARIH 78 Query: 83 -----------LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + +T + + +E L E ++ + K D ++A L + Sbjct: 79 LAKAQFAAYRETQDLTVFLNTDNEFLVKENGQLTDRFLAKLDPNEAFRRLGFAEQNMDLA 138 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAI 159 V TIH FC ++ Q+ + + I HF + Sbjct: 139 AVYTIHGFCRRMLMQYAVNSGI--HFNL 164 >gi|327484827|gb|AEA79234.1| Exodeoxyribonuclease V beta chain RecB [Vibrio cholerae LMA3894-4] Length = 1208 Score = 39.3 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 23/148 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + A D +L + + + +D + A LL++ + TIH F Sbjct: 85 LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKK 167 C+ ++ Q E+ +E S K Sbjct: 138 CQRMLTQNAFESGSRFENEFVTDESSLK 165 >gi|302308651|ref|NP_985640.2| AFR093Wp [Ashbya gossypii ATCC 10895] gi|299790729|gb|AAS53464.2| AFR093Wp [Ashbya gossypii ATCC 10895] Length = 1131 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 DPT++ + A G+GKT +L R L+ + +P +++ T TK AA E+ RV I+ Sbjct: 20 DPTKALQIVAGPGTGKTKVLTTRYAYLVAIKKINPLSIIMTTFTKKAADEIKARVEPIL 78 >gi|256957408|ref|ZP_05561579.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DS5] gi|257077596|ref|ZP_05571957.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis JH1] gi|294779926|ref|ZP_06745307.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis PC1.1] gi|256947904|gb|EEU64536.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DS5] gi|256985626|gb|EEU72928.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis JH1] gi|294452975|gb|EFG21396.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis PC1.1] Length = 752 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ +P +L +T T AA EM RV Sbjct: 28 VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153 NK +LET G + V T H+ C I+++ + Sbjct: 76 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 108 Query: 154 TSHFAIADEEQSKKLIE 170 +F I D + K L++ Sbjct: 109 NRNFTIIDPSEQKTLMK 125 >gi|238854177|ref|ZP_04644524.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 202-4] gi|238833253|gb|EEQ25543.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 202-4] Length = 747 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L +R+ L+ P +L +T T AA EM RV +++ Sbjct: 27 VVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLL 78 >gi|229528683|ref|ZP_04418073.1| exodeoxyribonuclease V beta chain [Vibrio cholerae 12129(1)] gi|229332457|gb|EEN97943.1| exodeoxyribonuclease V beta chain [Vibrio cholerae 12129(1)] Length = 1208 Score = 39.3 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 23/148 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + A D +L + + + +D + A LL++ + TIH F Sbjct: 85 LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKK 167 C+ ++ Q E+ +E S K Sbjct: 138 CQRMLTQNAFESGSRFENEFVTDESSLK 165 >gi|254037294|ref|ZP_04871371.1| I DNA and RNA helicase [Escherichia sp. 1_1_43] gi|226840400|gb|EEH72402.1| I DNA and RNA helicase [Escherichia sp. 1_1_43] Length = 1131 Score = 39.3 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 28/52 (53%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 + A G+GKT LV RV LL P +L LT + AA EM+ R+ + T Sbjct: 209 LEAGPGTGKTQTLVGRVKGLLSDGVDPRKILLLTFSNKAAGEMAERIARVDT 260 >gi|254515002|ref|ZP_05127063.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [gamma proteobacterium NOR5-3] gi|219677245|gb|EED33610.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [gamma proteobacterium NOR5-3] Length = 1042 Score = 39.3 bits (90), Expect = 0.45, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 33/146 (22%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +SA AGSGKT+ L + LR LLA+ P ++ T T+ AA E+ RV + H Sbjct: 7 ISAGAGSGKTYTLTGK-LRDLLASGTIRPEGVVATTFTRLAAGELKERVRGSLIKGGH-- 63 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 H + T +E + T+++ C ++++F EA + Sbjct: 64 -------------------------HTVATEVEQA---LIGTVNSVCGVLLKRFAFEAGL 95 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLAS 179 +E Q+ L A + LA+ Sbjct: 96 PPEQRTLEETQAALLFNRAMEHALAT 121 >gi|116630137|ref|YP_815309.1| superfamily I DNA/RNA helicase [Lactobacillus gasseri ATCC 33323] gi|116095719|gb|ABJ60871.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri ATCC 33323] Length = 757 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L +R+ L+ P +L +T T AA EM RV +++ Sbjct: 37 VVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLL 88 >gi|306825212|ref|ZP_07458554.1| ATP-dependent nuclease subunit A [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432648|gb|EFM35622.1| ATP-dependent nuclease subunit A [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 1217 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERL 91 >gi|295114066|emb|CBL32703.1| ATP-dependent DNA helicase PcrA [Enterococcus sp. 7L76] Length = 752 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ +P +L +T T AA EM RV Sbjct: 28 VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 75 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153 NK +LET G + V T H+ C I+++ + Sbjct: 76 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 108 Query: 154 TSHFAIADEEQSKKLIE 170 +F I D + K L++ Sbjct: 109 NRNFTIIDPSEQKTLMK 125 >gi|295698460|ref|YP_003603115.1| DNA helicase II [Candidatus Riesia pediculicola USDA] gi|291157481|gb|ADD79926.1| DNA helicase II [Candidatus Riesia pediculicola USDA] Length = 651 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 39/155 (25%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +K ++ + + + V A AGSGKT +LV R++ LL +++L LT + A E Sbjct: 6 NSKQKEAVTAPSEENILVLAGAGSGKTRVLVHRIIWLLKKIRVSSTSILTLTFSNKAVLE 65 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 + RV +II +L E L + T H Sbjct: 66 IRRRVNDII----NLCQE----------------------------------NLIIDTFH 87 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 ++ E N+ +F I D E K I +A Sbjct: 88 GLAYRFLRVHYSEVNLPYNFQILDSEDQKYFIRKA 122 >gi|196250519|ref|ZP_03149210.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. G11MC16] gi|196210009|gb|EDY04777.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. G11MC16] Length = 724 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT +L R+ L+A H P +L +T T AA EM RV Sbjct: 29 IMAGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMRERV 76 >gi|171915021|ref|ZP_02930491.1| ATP-dependent DNA helicase [Verrucomicrobium spinosum DSM 4136] Length = 665 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 28/49 (57%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AG+GKT + R+ ++ PS +L +T T AA EM RV +++ Sbjct: 27 AGAGTGKTRTVTMRIAHMVDEGISPSNILSVTFTNKAANEMRERVKDML 75 >gi|114570609|ref|YP_757289.1| ATP-dependent DNA helicase Rep [Maricaulis maris MCS10] gi|114341071|gb|ABI66351.1| ATP-dependent DNA helicase, Rep family [Maricaulis maris MCS10] Length = 763 Score = 39.3 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A P +L +T T AA EM RV +II Sbjct: 39 VLAGAGTGKTRVLTTRLAHILATGRARPWEILAVTFTNKAAREMKERVGKII 90 >gi|294506408|ref|YP_003570466.1| ATP-dependent DNA helicase [Salinibacter ruber M8] gi|294342736|emb|CBH23514.1| ATP-dependent DNA helicase [Salinibacter ruber M8] Length = 712 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 38/126 (30%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A AG+GKT L+ R+ L+ P ++ LT T+ AA +M+ R + Sbjct: 46 IVAGAGTGKTRTLIYRLAYLVETGTRPQQIVLLTFTRRAANDMTAR-----------ASN 94 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +L K++G T HAFC +++Q Sbjct: 95 LLDGRCEKVRGG---------------------------TFHAFCLEVLRQHAEALGFPR 127 Query: 156 HFAIAD 161 +F + D Sbjct: 128 NFTVLD 133 >gi|282851210|ref|ZP_06260575.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 224-1] gi|282557178|gb|EFB62775.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 224-1] Length = 730 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L +R+ L+ P +L +T T AA EM RV +++ Sbjct: 10 VVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLL 61 >gi|183598401|ref|ZP_02959894.1| hypothetical protein PROSTU_01795 [Providencia stuartii ATCC 25827] gi|188020579|gb|EDU58619.1| hypothetical protein PROSTU_01795 [Providencia stuartii ATCC 25827] Length = 684 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 4/82 (4%) Query: 4 HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62 ++ F +H ET L S S+ L + + V A AGSGKT +LV R LLL A Sbjct: 185 YSDFFQHVETSPLNS---SQALSVINGEDNVLVLAGAGSGKTSVLVARAGWLLLRKLAKA 241 Query: 63 STLLCLTHTKAAAAEMSHRVLE 84 +L L + AA EM+ R+ E Sbjct: 242 EQILLLAFGRKAAQEMNERIQE 263 >gi|138893931|ref|YP_001124384.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2] gi|134265444|gb|ABO65639.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2] Length = 724 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT +L R+ L+A H P +L +T T AA EM RV Sbjct: 29 IMAGAGSGKTRVLTHRIA-YLMAEKHVVPWNILAITFTNKAAREMRERV 76 >gi|255311430|ref|ZP_05354000.1| DNA helicase [Chlamydia trachomatis 6276] gi|255317731|ref|ZP_05358977.1| DNA helicase [Chlamydia trachomatis 6276s] Length = 634 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L S+ + Q+ A + P + V A AG+GKT ++ R+L L+ + P +L +T T Sbjct: 2 LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILYLIEESRLDPKQILAITFTNK 61 Query: 74 AAAEMSHRV 82 AA E+ RV Sbjct: 62 AANELKERV 70 >gi|57167773|ref|ZP_00366913.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Campylobacter coli RM2228] gi|305432203|ref|ZP_07401367.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Campylobacter coli JV20] gi|57020895|gb|EAL57559.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Campylobacter coli RM2228] gi|304444746|gb|EFM37395.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Campylobacter coli JV20] Length = 676 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S+ EQ LA+ + A+AG+GKT +V R+ LL P ++ LT T A+ Sbjct: 3 LSRLNEEQYLAATANFGHNLIIASAGTGKTSTIVARISYLLSQGVSPQKIMLLTFTNKAS 62 Query: 76 AEMSHRV 82 EM R+ Sbjct: 63 KEMISRL 69 >gi|23014129|ref|ZP_00053963.1| COG0210: Superfamily I DNA and RNA helicases [Magnetospirillum magnetotacticum MS-1] Length = 760 Score = 39.3 bits (90), Expect = 0.46, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V + AG+GKT +L R+ +L +N A P L +T T AA EM RV +++ Sbjct: 53 VLSGAGTGKTKVLTSRLAHILASNLAQPWQCLAVTFTNRAAREMKERVAQLV 104 >gi|295401728|ref|ZP_06811694.1| ATP-dependent DNA helicase PcrA [Geobacillus thermoglucosidasius C56-YS93] gi|312112464|ref|YP_003990780.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y4.1MC1] gi|294976215|gb|EFG51827.1| ATP-dependent DNA helicase PcrA [Geobacillus thermoglucosidasius C56-YS93] gi|311217565|gb|ADP76169.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y4.1MC1] Length = 730 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT +L R+ LL P +L +T T AA EM RV Sbjct: 29 IMAGAGSGKTRVLTHRIAYLLAEKQVAPWNILAITFTNKAAREMKERV 76 >gi|229055131|ref|ZP_04195559.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH603] gi|228721207|gb|EEL72736.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH603] Length = 743 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWV-SANAGSGKTHILVQRVLRLLLANA-HPSTLLCL 68 S T L++ +Q A T A + A AGSGKT +L R+ LL P +L + Sbjct: 2 STTDKLLNGLNPQQQKAVQTTNGALLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAI 61 Query: 69 THTKAAAAEMSHRVLEII 86 T T AA EM R+ +++ Sbjct: 62 TFTNKAAREMRERIDKLV 79 >gi|59712229|ref|YP_205005.1| DNA helicase IV [Vibrio fischeri ES114] gi|59480330|gb|AAW86117.1| DNA helicase IV [Vibrio fischeri ES114] Length = 687 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 4/80 (5%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 +F E+ L +S LL D T V A AGSGKT +LV RV L+ + A Sbjct: 187 TFFSECESQPLNESQQSALLLNEDHTL---VLAGAGSGKTSVLVARVNYLIQSGQAQADE 243 Query: 65 LLCLTHTKAAAAEMSHRVLE 84 +L L + AA EMS R+++ Sbjct: 244 ILLLAFGRQAAQEMSGRIID 263 >gi|322376656|ref|ZP_08051149.1| ATP-dependent nuclease subunit A [Streptococcus sp. M334] gi|321282463|gb|EFX59470.1| ATP-dependent nuclease subunit A [Streptococcus sp. M334] Length = 1216 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERL 91 >gi|301066102|ref|YP_003788125.1| superfamily I DNA and RNA helicase [Lactobacillus casei str. Zhang] gi|300438509|gb|ADK18275.1| Superfamily I DNA and RNA helicase [Lactobacillus casei str. Zhang] Length = 751 Score = 39.3 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 ++ +SE +LA++ + A AGSGKT +L R+ L+ + +P +L +T T AA Sbjct: 10 MNDKQSEAVLATEG--PVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFTNKAA 67 Query: 76 AEMSHRVLEIITA 88 EM RV +++ A Sbjct: 68 REMRERVGKLVDA 80 >gi|294497110|ref|YP_003560810.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium QM B1551] gi|294347047|gb|ADE67376.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium QM B1551] Length = 741 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ L+ P +L +T T AA EM RV I+ Sbjct: 31 AGAGSGKTRVLTHRIAFLMAEKEVAPWNILAITFTNKAAREMRERVASIVGG 82 >gi|229131293|ref|ZP_04260195.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST196] gi|229165271|ref|ZP_04293058.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH621] gi|228618096|gb|EEK75134.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH621] gi|228652179|gb|EEL08114.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST196] Length = 743 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWV-SANAGSGKTHILVQRVLRLLLANA-HPSTLLCL 68 S T L++ +Q A T A + A AGSGKT +L R+ LL P +L + Sbjct: 2 STTDKLLNGLNPQQQKAVQTTNGALLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAI 61 Query: 69 THTKAAAAEMSHRVLEII 86 T T AA EM R+ +++ Sbjct: 62 TFTNKAAREMRERIDKLV 79 >gi|296444468|ref|ZP_06886433.1| UvrD/REP helicase [Methylosinus trichosporium OB3b] gi|296258115|gb|EFH05177.1| UvrD/REP helicase [Methylosinus trichosporium OB3b] Length = 777 Score = 39.3 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AG+GKT +L R+ +L A A P +L +T T AA EM RV Sbjct: 51 VLAGAGTGKTRVLTTRIAHILASAKARPWEILAVTFTNKAAREMRERV 98 >gi|226950697|ref|YP_002805788.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A2 str. Kyoto] gi|226843377|gb|ACO86043.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A2 str. Kyoto] Length = 738 Score = 39.3 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ ++ N +PS +L +T T AA EM R+ ++ Sbjct: 24 ILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFTNKAAGEMKERIKALV 75 >gi|170755491|ref|YP_001782895.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum B1 str. Okra] gi|169120703|gb|ACA44539.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum B1 str. Okra] Length = 738 Score = 39.3 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ ++ N +PS +L +T T AA EM R+ ++ Sbjct: 24 ILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFTNKAAGEMKERIKALV 75 >gi|148381216|ref|YP_001255757.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC 3502] gi|153933103|ref|YP_001385591.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC 19397] gi|153936248|ref|YP_001388997.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. Hall] gi|168179081|ref|ZP_02613745.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum NCTC 2916] gi|148290700|emb|CAL84830.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502] gi|152929147|gb|ABS34647.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC 19397] gi|152932162|gb|ABS37661.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. Hall] gi|182670183|gb|EDT82159.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum NCTC 2916] Length = 738 Score = 39.3 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ ++ N +PS +L +T T AA EM R+ ++ Sbjct: 24 ILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFTNKAAGEMKERIKALV 75 >gi|119510681|ref|ZP_01629809.1| DNA helicase II [Nodularia spumigena CCY9414] gi|119464635|gb|EAW45544.1| DNA helicase II [Nodularia spumigena CCY9414] Length = 774 Score = 39.3 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 11 SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCL 68 + TID +S Q A + V A AGSGKT L R+ L+L + +P +L + Sbjct: 2 TTTIDFLSHLNPSQRQAVEHYCGPLLVVAGAGSGKTRALTYRIANLILKHGVYPEHILAV 61 Query: 69 THTKAAAAEMSHRV 82 T T AA EM R+ Sbjct: 62 TFTNKAAREMKERI 75 >gi|89899997|ref|YP_522468.1| UvrD/REP helicase [Rhodoferax ferrireducens T118] gi|89344734|gb|ABD68937.1| UvrD/REP helicase [Rhodoferax ferrireducens T118] Length = 1112 Score = 39.3 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Query: 23 EQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSH 80 +QLLA P R V A GSGKT LV R+ L+ A PS +L LT T AA E+ Sbjct: 200 DQLLAIQAPERYVNVVAGPGSGKTSTLVHRIRYLIDEKAVDPSHILVLTFTNKAAFELVD 259 Query: 81 RV 82 R+ Sbjct: 260 RL 261 >gi|13508079|ref|NP_110028.1| DNA helicase II [Mycoplasma pneumoniae M129] gi|2495150|sp|P75438|Y340_MYCPN RecName: Full=Probable DNA helicase MPN_340 gi|1674189|gb|AAB96144.1| DNA helicase II [Mycoplasma pneumoniae M129] Length = 529 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 44/191 (23%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V + AG+GKT ++ +R L+ +P ++L T T AA+EM R++++I Sbjct: 21 VYSGAGTGKTTVIAERFAYLVNEKGVNPQSILAFTFTDKAASEMRQRIIKLI-------- 72 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-----FPL 149 P KS L + T H+F +Q+ F + Sbjct: 73 --------------PQKSLQD---------------LHIYTFHSFANRFLQKHGKSDFAI 103 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209 ++ F+ + + + E K+ + + LD N E AF + + +ED T+ + Sbjct: 104 LSDSNRFFSDYEMGDQLQTVVEIYKNKVVDLELD-NLEYNSAFRDACTDTFNEDFSTISN 162 Query: 210 DIISNRTALKL 220 R A L Sbjct: 163 GQFRKRAATAL 173 >gi|301633254|gb|ADK86808.1| UvrD/REP helicase [Mycoplasma pneumoniae FH] Length = 529 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 54/196 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V + AG+GKT ++ +R L+ +P ++L T T AA+EM R++++I Sbjct: 21 VYSGAGTGKTTVIAERFAYLVNEKGVNPQSILAFTFTDKAASEMRQRIIKLI-------- 72 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P KS L + T H+F +Q+ + Sbjct: 73 --------------PQKSLQD---------------LHIYTFHSFANRFLQK-----HGK 98 Query: 155 SHFAI--------ADEEQSKKL--IEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204 S FAI +D E +L + E K+ + + LD N E AF + + +ED Sbjct: 99 SDFAILRDSNRFFSDYEMGDQLQTVVEIYKNKVVDLELD-NLEYNSAFRDACTDTFNEDF 157 Query: 205 ETLISDIISNRTALKL 220 T+ + R A L Sbjct: 158 STISNGQFRKRAATAL 173 >gi|322437047|ref|YP_004219259.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9] gi|321164774|gb|ADW70479.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9] Length = 929 Score = 39.3 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 45/144 (31%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT ++ R+ L+ P +L +T T AA EM+ RV +II S L+ Sbjct: 27 AGAGSGKTRVITHRIAYLIEERGVSPDAILAVTFTNKAAKEMAERVDKII-GHSSLAKPT 85 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA----- 151 LS T H+FC ++++ +EA Sbjct: 86 LS------------------------------------TFHSFCVRVLRR-DIEALQVGG 108 Query: 152 -NITSHFAIADEEQSKKLIEEAKK 174 +T FAI DE + +++ A K Sbjct: 109 KGLTRTFAIYDETDQQAVVKSALK 132 >gi|257470506|ref|ZP_05634596.1| UvrD/REP helicase [Fusobacterium ulcerans ATCC 49185] gi|317064713|ref|ZP_07929198.1| UvrD/REP helicase [Fusobacterium ulcerans ATCC 49185] gi|313690389|gb|EFS27224.1| UvrD/REP helicase [Fusobacterium ulcerans ATCC 49185] Length = 617 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 14 IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 I+ + EQL A + V A AGSGKT +V R ++ +L LT TK Sbjct: 27 INYSKELNEEQLRALTFIEGQYLVIAGAGSGKTRTIVYRTAFMIEKGLAEENILMLTFTK 86 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 87 KAALEMKERL 96 >gi|227535467|ref|ZP_03965516.1| ATP-dependent DNA helicase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227186877|gb|EEI66944.1| ATP-dependent DNA helicase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 751 Score = 39.3 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 ++ +SE +LA++ + A AGSGKT +L R+ L+ + +P +L +T T AA Sbjct: 10 MNDKQSEAVLATEG--PVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFTNKAA 67 Query: 76 AEMSHRVLEIITA 88 EM RV +++ A Sbjct: 68 REMRERVGKLVDA 80 >gi|118472301|ref|YP_886308.1| ATP-dependent DNA helicase [Mycobacterium smegmatis str. MC2 155] gi|118173588|gb|ABK74484.1| ATP-dependent DNA helicase [Mycobacterium smegmatis str. MC2 155] Length = 1087 Score = 39.3 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLL 66 E S + L T + + + P V A AG+GKT + RV+ L+AN A PS +L Sbjct: 9 ELSAALGLFPPTDEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGFATPSQVL 67 Query: 67 CLTHTKAAAAEMSHRV 82 LT T+ AA ++ RV Sbjct: 68 GLTFTRKAAGQLLRRV 83 >gi|34557269|ref|NP_907084.1| ATP-dependent DNA helicase [Wolinella succinogenes DSM 1740] gi|34482985|emb|CAE09984.1| ATP-DEPENDENT DNA HELICASE EC 3.6.1 [Wolinella succinogenes] Length = 681 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 S + A AGSGKT + R+ L+ PS L LT T AAAEM R L ++ Sbjct: 23 SLLILAGAGSGKTKTITTRLAYLIEEVGIPPSNTLTLTFTNKAAAEMRERALRLV 77 >gi|319941481|ref|ZP_08015809.1| hypothetical protein HMPREF9464_01028 [Sutterella wadsworthensis 3_1_45B] gi|319805101|gb|EFW01931.1| hypothetical protein HMPREF9464_01028 [Sutterella wadsworthensis 3_1_45B] Length = 1191 Score = 39.3 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 19/179 (10%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVL 83 +L + R + A+AG+GKT + VLR + + S +L +T T+AA AE+ R+ Sbjct: 70 MLRAPLMRPTLLEASAGTGKTFSIKHLVLRFVAEEDVSVSRMLIMTFTRAATAELKARIQ 129 Query: 84 EIITAWSHL-----SDEILSAEITKI------QGKKPNKSDMSKARHLLITILETPGGLK 132 ++A L +D + A + + QG+ P +S+ R L + G Sbjct: 130 SHLSAMHGLMTGTFADSAVDAVLLEQRALWAEQGRDP-AVIVSRLRESLAQ-FDNAG--- 184 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + TIH FC+ +++ + + F + E L+EE + + +L +E +A Sbjct: 185 IFTIHGFCQKVLEDRAFTSGSSIGFELV--ENVDDLVEEVVNEFIRTSLLQLSEREDRA 241 >gi|313667543|ref|YP_004047827.1| DNA helicase II [Neisseria lactamica ST-640] gi|313005005|emb|CBN86435.1| DNA helicase II [Neisseria lactamica 020-06] Length = 735 Score = 39.3 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTDQASVHSIMAVTFIN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM R+ +I Sbjct: 69 KAAKEMQTRLGAMI 82 >gi|307709426|ref|ZP_07645883.1| recombination helicase AddA [Streptococcus mitis SK564] gi|307619740|gb|EFN98859.1| recombination helicase AddA [Streptococcus mitis SK564] Length = 1216 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERL 91 >gi|293378593|ref|ZP_06624754.1| UvrD/REP helicase [Enterococcus faecium PC4.1] gi|292642783|gb|EFF60932.1| UvrD/REP helicase [Enterococcus faecium PC4.1] Length = 425 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L RV L+ N P +L +T T AA EM RV +++ Sbjct: 27 IMAGAGSGKTRVLTHRVAYLIQEKNVLPWHVLAITFTNKAAREMRERVDKLL 78 >gi|256372491|ref|YP_003110315.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331] gi|256009075|gb|ACU54642.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331] Length = 593 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 10/94 (10%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRV-LRLLLANAHPSTLLCLTHTKAAAAEMS 79 + E +LA P R V A AGSGKT +L +R+ ++ L P T LT T+AAA + Sbjct: 15 QREAVLAPAPVR---VIAPAGSGKTLVLTRRIAAQIRLGAVRPRTSAALTFTRAAALSLR 71 Query: 80 HRVLEI------ITAWSHLSDEILSAEITKIQGK 107 R+ IT H + + +E+ +++GK Sbjct: 72 QRLARTLDTTLPITTTIHGAALVWLSELARLEGK 105 >gi|89893428|ref|YP_516915.1| hypothetical protein DSY0682 [Desulfitobacterium hafniense Y51] gi|89332876|dbj|BAE82471.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 1600 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V+A GSGKT ILV ++ LLL + LL +T ++AA+ E R+L +I Sbjct: 1065 VAAGPGSGKTRILVHKLASLLLMEDVKHEQLLMVTFSRAASNEFKKRLLNLI 1116 >gi|68066901|ref|XP_675422.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56494600|emb|CAH94076.1| hypothetical protein PB000399.00.0 [Plasmodium berghei] Length = 198 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 12/127 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL-- 92 + A GSGKT L R+++ ++ +++C+T T +A ++ ++++ I L Sbjct: 54 CIIACPGSGKTSTLTARIIKSIIE--RKKSIVCITFTNYSAKDLKEKIIKKINCLIDLCT 111 Query: 93 SDEILSAEITK---IQGKK--PNKSDMSKARHL-LITILETPGGLKVQTIHAFCEAIMQQ 146 EI + + I G K K D++K + +L+T + + TIH+FC I+ + Sbjct: 112 GKEIQNKLFNRNKNIGGNKIRNKKYDINKTMYKNKFKVLDTT--IFIGTIHSFCRYILLK 169 Query: 147 FPLEANI 153 + E I Sbjct: 170 YKGEFKI 176 >gi|239625785|ref|ZP_04668816.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520015|gb|EEQ59881.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 854 Score = 39.3 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 39/141 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L RV L+ + +P +L +T T AA EM RV +++ Sbjct: 24 ILAGAGSGKTRVLTHRVAYLIDEKDVNPWNILAITFTNKAAGEMRERVDQLVG------- 76 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 AE + V T H+ C I+++ T Sbjct: 77 --FGAE-----------------------------SIWVSTFHSTCVRILRRHIECLGYT 105 Query: 155 SHFAIADEEQSKKLIEEAKKS 175 + F+I D + K L+++ KS Sbjct: 106 TSFSIYDSDDQKTLMKQVFKS 126 >gi|210623662|ref|ZP_03293971.1| hypothetical protein CLOHIR_01921 [Clostridium hiranonis DSM 13275] gi|210153427|gb|EEA84433.1| hypothetical protein CLOHIR_01921 [Clostridium hiranonis DSM 13275] Length = 776 Score = 39.3 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 19/161 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITA--WSHL 92 V A G+GKT I+ + V LL N + +L LT+ +A R+ +++ + Sbjct: 23 VPAVPGAGKTFIVTRLVTELLENNINGKEKILILTYMNSAVNNFKGRIKKLLNEKYGEDV 82 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 E +E + K+ NK + + + +V TIH+ I+++ P A Sbjct: 83 EIEENLSEEEINEIKRKNKDTLRRLNN----------SYEVMTIHSLATKIIKENPESAM 132 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 + F IAD+ Q ++ E +S L++ E+ KK FY Sbjct: 133 LNEEFMIADDAQRSIILNECIESYLST------EKGKKYFY 167 >gi|295692389|ref|YP_003600999.1| ATP-dependent DNA helicase pcra [Lactobacillus crispatus ST1] gi|295030495|emb|CBL49974.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus ST1] Length = 748 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 V A AGSGKT +L +R+ L+ N P +L +T T AA+EM R Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKAASEMRER 73 >gi|239931604|ref|ZP_04688557.1| superfamily I DNA/RNA helicase [Streptomyces ghanaensis ATCC 14672] gi|291439976|ref|ZP_06579366.1| superfamily I DNA and RNA helicase [Streptomyces ghanaensis ATCC 14672] gi|291342871|gb|EFE69827.1| superfamily I DNA and RNA helicase [Streptomyces ghanaensis ATCC 14672] Length = 921 Score = 39.3 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT ++ QR+ RL+ + P ++ T T+ AA E+ RV Sbjct: 20 IVACAGSGKTEVISQRIARLIGRPDVEPKNIVAFTFTEKAAGELKERV 67 >gi|163756230|ref|ZP_02163345.1| ATP-dependent DNA helicase II [Kordia algicida OT-1] gi|161323842|gb|EDP95176.1| ATP-dependent DNA helicase II [Kordia algicida OT-1] Length = 778 Score = 39.3 bits (90), Expect = 0.49, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ +L LT T AA EM +R+ I+ Sbjct: 29 VIAGAGSGKTRVLTYRIAYLMSQGIDAFNILSLTFTNKAAREMKNRIANIV 79 >gi|332180280|gb|AEE15968.1| UvrD/REP helicase [Treponema brennaborense DSM 12168] Length = 765 Score = 39.3 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 41/165 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 H + +S EQ A + + S + A AGSGKT ++ ++ L+ + P ++L Sbjct: 5 HPTAAEYLSVLNPEQRAAVEHSGSPLLILAGAGSGKTRVITTKIAYLIGEKDVDPYSILA 64 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T TK AAAEM+ S+ARHL T Sbjct: 65 VTFTKKAAAEMA-----------------------------------SRARHLEPRAANT 89 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 ++T H+F ++ EA + F + DE+ L+ +A Sbjct: 90 ----AIRTFHSFGAWFLRLHAQEAGLDPSFTVYDEDDMVTLLTKA 130 >gi|319647077|ref|ZP_08001303.1| PcrA protein [Bacillus sp. BT1B_CT2] gi|317390901|gb|EFV71702.1| PcrA protein [Bacillus sp. BT1B_CT2] Length = 725 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ P +L +T T AA EM RV I+ Sbjct: 15 IMAGAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFTNKAAREMKERVESIL 66 >gi|227877012|ref|ZP_03995104.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus JV-V01] gi|227863383|gb|EEJ70810.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus JV-V01] Length = 753 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 V A AGSGKT +L +R+ L+ N P +L +T T AA+EM R Sbjct: 32 VVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKAASEMRER 78 >gi|161613408|ref|YP_001587373.1| hypothetical protein SPAB_01122 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362772|gb|ABX66540.1| hypothetical protein SPAB_01122 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 1127 Score = 39.3 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 26/47 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 + A G+GKT LV RV L P +L LT + AAAEMS R+ Sbjct: 214 LQAGPGTGKTRTLVARVESLFNDGIDPRRILLLTFSNKAAAEMSERI 260 >gi|323967209|gb|EGB62633.1| UvrD/REP helicase [Escherichia coli M863] gi|327253754|gb|EGE65383.1| helicase IV [Escherichia coli STEC_7v] Length = 684 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL +A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGDAAPEQILLLAFGRKAAEEMDERIRE 263 >gi|320008691|gb|ADW03541.1| UvrD/REP helicase [Streptomyces flavogriseus ATCC 33331] Length = 1174 Score = 39.3 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 63/167 (37%), Gaps = 35/167 (20%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T AA Sbjct: 27 IPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 86 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E++ RV + A ++L + PG + T Sbjct: 87 GELAERVRRALVAAGVTDPDVLDPD-------------------------NPPGEPSIST 121 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 HAF ++ L + E + +L+ +A + LA+ +L Sbjct: 122 YHAFAGRLLTDHGLRIGL---------EPTSRLLADATRYQLAARVL 159 >gi|269215715|ref|ZP_06159569.1| ATP-dependent DNA helicase PcrA [Slackia exigua ATCC 700122] gi|269131202|gb|EEZ62277.1| ATP-dependent DNA helicase PcrA [Slackia exigua ATCC 700122] Length = 770 Score = 39.3 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 39/137 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ +L P +L +T T AAAEM R+ ++ Sbjct: 24 VLAGAGSGKTRVLTYRIAHMLEDLGIQPWQILAITFTNKAAAEMRERLGRLVG------- 76 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 AR G+ V T H+ C I++ + Sbjct: 77 --------------------PAAR-----------GMWVSTFHSMCVRILRTDCERLGFS 105 Query: 155 SHFAIADEEQSKKLIEE 171 F I D++ SK+L+++ Sbjct: 106 QGFTIYDDDDSKRLVKD 122 >gi|262047039|ref|ZP_06019998.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus MV-3A-US] gi|293381896|ref|ZP_06627864.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus 214-1] gi|260572616|gb|EEX29177.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus MV-3A-US] gi|290921543|gb|EFD98577.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus 214-1] Length = 748 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 V A AGSGKT +L +R+ L+ N P +L +T T AA+EM R Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKAASEMRER 73 >gi|260576816|ref|ZP_05844800.1| ATP-dependent DNA helicase, RecQ family [Rhodobacter sp. SW2] gi|259020959|gb|EEW24271.1| ATP-dependent DNA helicase, RecQ family [Rhodobacter sp. SW2] Length = 1415 Score = 39.3 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 5/85 (5%) Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 +D + +++ D ++ V A GSGKT +LV R+ L+ + P +L LT+ Sbjct: 1044 VDALDNPAQAEIVRDDREQTNVLVLAGPGSGKTRVLVHRIAYLIRVKREDPRGILVLTYN 1103 Query: 72 KAAAAEMSHRVLEII---TAWSHLS 93 + AAAE+ R+ +I AW +S Sbjct: 1104 RHAAAEIRERLRLLIGEDAAWVTVS 1128 >gi|269127954|ref|YP_003301324.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183] gi|268312912|gb|ACY99286.1| UvrD/REP helicase [Thermomonospora curvata DSM 43183] Length = 1128 Score = 39.3 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLL 66 E + ++L T + + S P V A AGSGK+ + RV+ L+AN P +L Sbjct: 6 ELARLLELPEPTPEQARVISAPLAPMAVIAGAGSGKSETMAARVV-WLVANGLVRPERVL 64 Query: 67 CLTHTKAAAAEMSHRV 82 LT T+ AA E++ R+ Sbjct: 65 GLTFTRKAAGELATRI 80 >gi|223939230|ref|ZP_03631111.1| UvrD/REP helicase [bacterium Ellin514] gi|223892062|gb|EEF58542.1| UvrD/REP helicase [bacterium Ellin514] Length = 692 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 29/57 (50%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 P + V A AGSGKT L RV LL +L LT T AA EM RV +++ Sbjct: 35 PPGPSLVIAGAGSGKTRTLTFRVGFLLEQGIPADRILLLTFTNKAAREMMRRVSDLL 91 >gi|15606167|ref|NP_213544.1| ATP-dependent DNA helicase REP [Aquifex aeolicus VF5] gi|2983362|gb|AAC06949.1| ATP-dependent DNA helicase REP [Aquifex aeolicus VF5] Length = 669 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT L +V L+ P +LC+T T AA E+ R+ Sbjct: 20 VVAGAGSGKTKTLTHKVEYLIKEKGLKPYEILCITFTNKAAKEIKERI 67 >gi|329576878|gb|EGG58363.1| hypothetical protein HMPREF9520_01337 [Enterococcus faecalis TX1467] Length = 191 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 41/137 (29%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ +P +L +T T AA EM RV Sbjct: 67 VMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERV------------ 114 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153 NK +LET G + V T H+ C I+++ + Sbjct: 115 ---------------NK------------LLETGGEDVWVSTFHSMCVRILRRDVDQIGY 147 Query: 154 TSHFAIADEEQSKKLIE 170 +F I D + K L++ Sbjct: 148 NRNFTIIDPSEQKTLMK 164 >gi|294807341|ref|ZP_06766153.1| putative ATP-dependent helicase PcrA [Bacteroides xylanisolvens SD CC 1b] gi|294445471|gb|EFG14126.1| putative ATP-dependent helicase PcrA [Bacteroides xylanisolvens SD CC 1b] Length = 614 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 45/176 (25%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAH-PSTLLC 67 ++ ID +++++ + +D + V A AGSGKT +L ++ LL N + P +L Sbjct: 2 NTNYIDELNESQCAAVTYNDG--PSLVIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T AA EM R+ + M +AR+L + Sbjct: 60 LTFTNKAAREMKERIARQVG--------------------------MERARYLWMG---- 89 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 T H+ I++ TS F I D SK L+ +S + + LD Sbjct: 90 -------TFHSIFSRILRAEAQYIGFTSQFTIYDTADSKSLL----RSIIKEMGLD 134 >gi|283954348|ref|ZP_06371869.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp. jejuni 414] gi|283794147|gb|EFC32895.1| ATP-dependent DNA helicase, putative [Campylobacter jejuni subsp. jejuni 414] Length = 676 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S+ +EQ LA+ V A+AG+GKT +V R+ LL P ++ LT T A+ Sbjct: 3 LSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLSKGIAPQKIMLLTFTNKAS 62 Query: 76 AEMSHRV 82 EM R+ Sbjct: 63 KEMIGRL 69 >gi|256850561|ref|ZP_05555987.1| ATP-dependent helicase [Lactobacillus crispatus MV-1A-US] gi|256712584|gb|EEU27579.1| ATP-dependent helicase [Lactobacillus crispatus MV-1A-US] Length = 748 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 V A AGSGKT +L +R+ L+ N P +L +T T AA+EM R Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKAASEMRER 73 >gi|256844677|ref|ZP_05550162.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus 125-2-CHN] gi|256613218|gb|EEU18422.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus 125-2-CHN] Length = 748 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 V A AGSGKT +L +R+ L+ N P +L +T T AA+EM R Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKAASEMRER 73 >gi|253990217|ref|YP_003041573.1| DNA helicase IV [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781667|emb|CAQ84830.1| dna helicase iv [Photorhabdus asymbiotica] Length = 684 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +LV RV LLL A P +L L AA EM+ R+ Sbjct: 214 VLAGAGSGKTSVLVARVGWLLLRQQAIPEQILLLAFDNPAADEMNERL 261 >gi|126728959|ref|ZP_01744774.1| DNA helicase II, putative [Sagittula stellata E-37] gi|126710889|gb|EBA09940.1| DNA helicase II, putative [Sagittula stellata E-37] Length = 827 Score = 39.3 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AG+GKT L RV+ LL A P+ +L +T T AA EM RV +++ Sbjct: 50 AGAGTGKTKALTARVVHLLNTGRARPNEILSVTFTNKAAREMKTRVGKVL 99 >gi|313673050|ref|YP_004051161.1| ATP-dependent DNA helicase pcra [Calditerrivibrio nitroreducens DSM 19672] gi|312939806|gb|ADR18998.1| ATP-dependent DNA helicase PcrA [Calditerrivibrio nitroreducens DSM 19672] Length = 677 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKA 73 D ++ T+ + +L +D V A AG+GKT ++ ++ LL P +L +T T Sbjct: 7 DDLNSTQKDAILYNDG--PLLVIAGAGTGKTRVITYKIAYLLKEMGIPPENILAVTFTNK 64 Query: 74 AAAEMSHRVLEII 86 AA EM RV+ ++ Sbjct: 65 AADEMLKRVVHLV 77 >gi|299144359|ref|ZP_07037439.1| ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518844|gb|EFI42583.1| ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 730 Score = 39.3 bits (90), Expect = 0.51, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 3/71 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 ++ +SE LL ++ + A AGSGKT ++ ++ L+ +PS++L +T T AA Sbjct: 6 LNNKQSEALLKTEG--PVLILAGAGSGKTKVVTNKIAYLIDEKRVYPSSILAITFTNKAA 63 Query: 76 AEMSHRVLEII 86 EM RV ++I Sbjct: 64 NEMKERVAKLI 74 >gi|261840154|gb|ACX99919.1| DNA helicase II [Helicobacter pylori 52] Length = 681 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78 +++++ AS + A AGSGKT L R++ L+ A PS L LT T A+ EM Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLVYLIGACGVPSENTLTLTFTNKASKEM 71 Query: 79 SHRVLEII 86 R L+++ Sbjct: 72 QERALKLL 79 >gi|241668460|ref|ZP_04756038.1| UvrD/REP superfamily I DNA/RNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876993|ref|ZP_05249703.1| UvrD/REP superfamily I DNA and RNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843014|gb|EET21428.1| UvrD/REP superfamily I DNA and RNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 671 Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 38/135 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++++++ L+ +P+ ++L +T T AA EM RV Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV------------ 69 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 KS + K E GL + T H+ I+++ L+ Sbjct: 70 ----------------KSRLDK---------EKSKGLMISTFHSLGLTILKKHFLDLGYK 104 Query: 155 SHFAIADEEQSKKLI 169 +F + D S LI Sbjct: 105 KNFTLFDSHDSLALI 119 >gi|38233332|ref|NP_939099.1| putative DNA helicase II [Corynebacterium diphtheriae NCTC 13129] gi|38199592|emb|CAE49248.1| Putative DNA helicase II [Corynebacterium diphtheriae] Length = 683 Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 I+L ++ A P + A AG+GKT + R+ L+ A P +L +T T+ Sbjct: 2 INLDDLDDDQRAAAEAPRGPVAILAGAGTGKTRTITYRIAHLIDRGMASPHRVLAVTFTR 61 Query: 73 AAAAEMSHRV 82 AA EM HR+ Sbjct: 62 RAAGEMRHRL 71 >gi|209884405|ref|YP_002288262.1| DNA helicase II [Oligotropha carboxidovorans OM5] gi|209872601|gb|ACI92397.1| DNA helicase II [Oligotropha carboxidovorans OM5] Length = 857 Score = 39.3 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AG+GKT +L R+ +L A PS +L +T T AA EM R+ Sbjct: 55 VLAGAGTGKTRVLTSRIAHILSEGRARPSEILSVTFTNKAAREMKQRL 102 >gi|209364296|ref|YP_001425453.2| DNA-dependent helicase II [Coxiella burnetii Dugway 5J108-111] gi|207082229|gb|ABS78395.2| DNA helicase II [Coxiella burnetii Dugway 5J108-111] Length = 723 Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 + P V A AGSGKT +L R+ L+ N P ++L +T T AA EM R+ Sbjct: 22 TSPFDHVLVLAGAGSGKTRVLTHRIAWLIQQKNVSPYSILAVTFTNKAAYEMRGRI 77 >gi|33864717|ref|NP_896276.1| UvrD/REP helicase [Synechococcus sp. WH 8102] gi|33632240|emb|CAE06696.1| UvrD/REP helicase [Synechococcus sp. WH 8102] Length = 797 Score = 39.3 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 26/148 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+ + A P+ +L +T T AA EM R LE+ Sbjct: 24 VVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFTNKAAREMKER-LEV--------- 73 Query: 95 EILSAEITKIQGKKPNKS----DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 +L+ ++ + Q +P + D + R + E L + T HA A M ++ ++ Sbjct: 74 -LLAQKLAQSQYGQPWSTLPPVDQRQLRSRIYR--EVSKELWIGTFHALF-ARMLRYDID 129 Query: 151 A-------NITSHFAIADEEQSKKLIEE 171 + T F+I DE ++ L++E Sbjct: 130 KFKDAEGLSWTKQFSIYDEADAQSLVKE 157 >gi|304390836|ref|ZP_07372788.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325719|gb|EFL92965.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 1191 Score = 39.3 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 88/197 (44%), Gaps = 15/197 (7%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78 T+ + + + P V A AGSGKT + R++ ++ A P +L LT T+ AAAEM Sbjct: 26 TREQSAVITAPRGQLLVVAGAGSGKTETIANRLVYWVVNAGIVPEAILGLTFTRKAAAEM 85 Query: 79 SHRVLEIITAWSHLSDEI----LSAEITKIQGKKPNKSDMSKARHLLITILE---TPGGL 131 + R + ++ L + + +AE+ + K D+++ R T+++ TP L Sbjct: 86 AARFSLRLDRFASLLESVQERRQTAEVNAVL--KAADFDLNQLRQRFDTLVQRGMTPEML 143 Query: 132 K----VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + V T ++ ++ +F S F + +++ + +S ++ E Sbjct: 144 RHPVSVSTYDSYAGTLLTEFGTLVGRESGFTTITDAARYQIMTDVVQSWTGALGTKREGE 203 Query: 188 LKKAFYEI-LEISNDED 203 + I L ++ND + Sbjct: 204 NAENLVNILLSLANDTN 220 >gi|266624561|ref|ZP_06117496.1| ATP-dependent DNA helicase PcrA [Clostridium hathewayi DSM 13479] gi|288863577|gb|EFC95875.1| ATP-dependent DNA helicase PcrA [Clostridium hathewayi DSM 13479] Length = 805 Score = 39.3 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ +P +L +T T AA EM RV +I+ Sbjct: 24 VLAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAGEMRERVDKIV 75 >gi|270307688|ref|YP_003329746.1| UvrD/REP helicase [Dehalococcoides sp. VS] gi|270153580|gb|ACZ61418.1| UvrD/REP helicase [Dehalococcoides sp. VS] Length = 972 Score = 39.3 bits (90), Expect = 0.52, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A D R A AGSGK+ L R+ RLL P ++ T T+ A+ + RV + + Sbjct: 20 AVDTAREVLCLACAGSGKSRTLAYRIARLLAEGEPPEGIVAFTFTEKASESIKRRVSQAL 79 Query: 87 T 87 T Sbjct: 80 T 80 >gi|319943193|ref|ZP_08017476.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Lautropia mirabilis ATCC 51599] gi|319743735|gb|EFV96139.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Lautropia mirabilis ATCC 51599] Length = 808 Score = 39.3 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL++ +Q A + P+ A + A AGSGKT +L R+ L+ P+ ++ +T T Sbjct: 3 DLLAHLNPQQRAAVTVPSGHALILAGAGSGKTRVLTTRIAWLVGTGQCSPAEIMAVTFTN 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 KAAREMMARL 72 >gi|315445540|ref|YP_004078419.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1] gi|315263843|gb|ADU00585.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1] Length = 1091 Score = 39.3 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLL 66 E S + L T+ + + + P V A AG+GKT + RV+ L+AN A P +L Sbjct: 10 ELSRALGLFEPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYATPGEVL 68 Query: 67 CLTHTKAAAAEMSHRV 82 LT T+ AA ++ RV Sbjct: 69 GLTFTRKAAGQLLRRV 84 >gi|300669638|sp|Q9PLT8|EX5B_CHLMU RecName: Full=Exodeoxyribonuclease V beta chain Length = 1026 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 28/137 (20%) Query: 30 PTRSA----WVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVL 83 PT S ++ A+AG+GKT + Q +LR LL T +L +T T AA E+ R+ Sbjct: 9 PTTSVSGKFFLEASAGTGKTFTIEQVILRSLLEGNVEQTKNILVVTFTNAATNELKLRIQ 68 Query: 84 EII--------TAWSHLSDEI---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 E + A SH + +S++ TK+ K K R+ L T+ E + Sbjct: 69 ESLKQALTLFSQALSHPETPLPPYVSSQETKV------KQLYXKXRNSLATLDE----MN 118 Query: 133 VQTIHAFCEAIMQQ-FP 148 + TIH C ++Q FP Sbjct: 119 IFTIHGLCRFTLEQHFP 135 >gi|296282686|ref|ZP_06860684.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354] Length = 769 Score = 39.3 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R+ L+ + A PS +LC+T T AA EM RV Sbjct: 42 AGAGTGKTSALTARLAHLVAMRLAWPSEILCVTFTNKAAREMRERV 87 >gi|293396721|ref|ZP_06640997.1| helicase IV [Serratia odorifera DSM 4582] gi|291420985|gb|EFE94238.1| helicase IV [Serratia odorifera DSM 4582] Length = 684 Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM+ R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLRRQEAEPGQILLLAFGRQAAQEMNQRISE 263 >gi|255324817|ref|ZP_05365930.1| ATP-dependent DNA helicase PcrA [Corynebacterium tuberculostearicum SK141] gi|255298117|gb|EET77421.1| ATP-dependent DNA helicase PcrA [Corynebacterium tuberculostearicum SK141] Length = 841 Score = 39.3 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Query: 10 HSETIDLISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLL 66 SE+ D +++ + Q L + + A AGSGKT +L +R+ L+ +P +L Sbjct: 34 QSESPDALTEGLNPQQLEAVTHSGSPLLIVAGAGSGKTAVLTRRIAYLMRHRGVNPWEIL 93 Query: 67 CLTHTKAAAAEMSHRV 82 +T T AAAEM RV Sbjct: 94 AITFTNKAAAEMKERV 109 >gi|229524317|ref|ZP_04413722.1| exodeoxyribonuclease V beta chain [Vibrio cholerae bv. albensis VL426] gi|229337898|gb|EEO02915.1| exodeoxyribonuclease V beta chain [Vibrio cholerae bv. albensis VL426] Length = 1208 Score = 39.3 bits (90), Expect = 0.53, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 23/132 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + A D +L + + + +D + A LL++ + TIH F Sbjct: 85 LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137 Query: 140 CEAIMQQFPLEA 151 C+ ++ Q E+ Sbjct: 138 CQRMLTQNAFES 149 >gi|332168825|gb|AEE18080.1| UvrD/REP helicase [Krokinobacter diaphorus 4H-3-7-5] Length = 795 Score = 38.9 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ +L LT T AA EM R+ +I+ Sbjct: 46 VIAGAGSGKTRVLTLRIAYLMSQGVDAFNILSLTFTNKAAREMKKRISDIV 96 >gi|167627907|ref|YP_001678407.1| UvrD/REP superfamily I DNA/RNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597908|gb|ABZ87906.1| UvrD/REP superfamily I DNA and RNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 671 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++++++ L+ +P+ ++L +T T AA EM RV Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV 69 >gi|153825966|ref|ZP_01978633.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-2] gi|149740283|gb|EDM54424.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-2] Length = 1208 Score = 38.9 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 23/132 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + A D +L + + + +D + A LL++ + TIH F Sbjct: 85 LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137 Query: 140 CEAIMQQFPLEA 151 C+ ++ Q E+ Sbjct: 138 CQRMLTQNAFES 149 >gi|148257387|ref|YP_001241972.1| ATP-dependent DNA helicase Rep [Bradyrhizobium sp. BTAi1] gi|146409560|gb|ABQ38066.1| ATP-dependent DNA helicase, Rep family [Bradyrhizobium sp. BTAi1] Length = 855 Score = 38.9 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A P +L +T T AA EM R+ E++ Sbjct: 57 VLAGAGTGKTRVLTTRIAHILSQGRARPGEILSVTFTNKAAREMKTRLAEML 108 >gi|309780454|ref|ZP_07675203.1| ATP-dependent DNA helicase Rep [Ralstonia sp. 5_7_47FAA] gi|308920782|gb|EFP66430.1| ATP-dependent DNA helicase Rep [Ralstonia sp. 5_7_47FAA] Length = 706 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++ Q++ L+L P + +T T AA EM RV +++ Sbjct: 26 VLAGAGSGKTRVITQKIAHLILDKGFEPKHIAAVTFTNKAAKEMQERVAKLMDG 79 >gi|303326279|ref|ZP_07356722.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp. 3_1_syn3] gi|302864195|gb|EFL87126.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio sp. 3_1_syn3] Length = 766 Score = 38.9 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 27/46 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 V A AGSGKT +V R+ L P+++L LT T+ AA EM R Sbjct: 25 VVAGAGSGKTRTIVYRLAWLAEHGVAPTSILLLTFTRKAAQEMLQR 70 >gi|229513960|ref|ZP_04403422.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TMA 21] gi|229349141|gb|EEO14098.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TMA 21] Length = 1208 Score = 38.9 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 23/132 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + A D +L + + + +D + A LL++ + TIH F Sbjct: 85 LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137 Query: 140 CEAIMQQFPLEA 151 C+ ++ Q E+ Sbjct: 138 CQRMLTQNAFES 149 >gi|221369953|ref|YP_002521049.1| hypothetical protein RSKD131_4116 [Rhodobacter sphaeroides KD131] gi|221163005|gb|ACM03976.1| Hypothetical Protein RSKD131_4116 [Rhodobacter sphaeroides KD131] Length = 791 Score = 38.9 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 V A GSGKTH+ +RV+ L+ PS +L L+ T+ A AE+ R+ Sbjct: 231 VEAGPGSGKTHVACERVISLVQDEGIAPSRILLLSFTRIAVAELRDRI 278 >gi|254464957|ref|ZP_05078368.1| UvrD/REP helicase domain protein [Rhodobacterales bacterium Y4I] gi|206685865|gb|EDZ46347.1| UvrD/REP helicase domain protein [Rhodobacterales bacterium Y4I] Length = 789 Score = 38.9 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ LL A P+ +L +T T AA EM RV Sbjct: 50 AGAGTGKTKALTTRIVHLLSTGRARPNEILSVTFTNKAAREMKERV 95 >gi|170016834|ref|YP_001727753.1| ATP-dependent DNA helicase PcrA [Leuconostoc citreum KM20] gi|169803691|gb|ACA82309.1| ATP-dependent DNA helicase PcrA [Leuconostoc citreum KM20] Length = 749 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 + A AGSGKT +L R+ L+ N P +L +T T AA EM R+ +++ Sbjct: 27 IMAGAGSGKTRVLTHRIAHLVQDLNVFPWRILAITFTNKAAREMRERIAALLS 79 >gi|153828214|ref|ZP_01980881.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 623-39] gi|148876303|gb|EDL74438.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 623-39] Length = 1208 Score = 38.9 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 23/132 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + A D +L + + + +D + A LL++ + TIH F Sbjct: 85 LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137 Query: 140 CEAIMQQFPLEA 151 C+ ++ Q E+ Sbjct: 138 CQRMLTQNAFES 149 >gi|153213940|ref|ZP_01949136.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 1587] gi|124115593|gb|EAY34413.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 1587] Length = 1208 Score = 38.9 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 23/132 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + A D +L + + + +D + A LL++ + TIH F Sbjct: 85 LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137 Query: 140 CEAIMQQFPLEA 151 C+ ++ Q E+ Sbjct: 138 CQRMLTQNAFES 149 >gi|15642318|ref|NP_231951.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586166|ref|ZP_01675957.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 2740-80] gi|153817895|ref|ZP_01970562.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae NCTC 8457] gi|153821518|ref|ZP_01974185.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae B33] gi|227082444|ref|YP_002810995.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae M66-2] gi|229507609|ref|ZP_04397114.1| exodeoxyribonuclease V beta chain [Vibrio cholerae BX 330286] gi|229512195|ref|ZP_04401674.1| exodeoxyribonuclease V beta chain [Vibrio cholerae B33] gi|229519331|ref|ZP_04408774.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC9] gi|229607115|ref|YP_002877763.1| exodeoxyribonuclease V beta chain [Vibrio cholerae MJ-1236] gi|254849444|ref|ZP_05238794.1| exodeoxyribonuclease V [Vibrio cholerae MO10] gi|255746995|ref|ZP_05420940.1| exodeoxyribonuclease V beta chain [Vibrio cholera CIRS 101] gi|262161463|ref|ZP_06030573.1| exodeoxyribonuclease V beta chain [Vibrio cholerae INDRE 91/1] gi|298500312|ref|ZP_07010117.1| exodeoxyribonuclease V, beta subunit [Vibrio cholerae MAK 757] gi|9656886|gb|AAF95464.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549578|gb|EAX59602.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 2740-80] gi|126511603|gb|EAZ74197.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae NCTC 8457] gi|126521011|gb|EAZ78234.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae B33] gi|227010332|gb|ACP06544.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae M66-2] gi|229344020|gb|EEO08995.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC9] gi|229352160|gb|EEO17101.1| exodeoxyribonuclease V beta chain [Vibrio cholerae B33] gi|229355114|gb|EEO20035.1| exodeoxyribonuclease V beta chain [Vibrio cholerae BX 330286] gi|229369770|gb|ACQ60193.1| exodeoxyribonuclease V beta chain [Vibrio cholerae MJ-1236] gi|254845149|gb|EET23563.1| exodeoxyribonuclease V [Vibrio cholerae MO10] gi|255735397|gb|EET90797.1| exodeoxyribonuclease V beta chain [Vibrio cholera CIRS 101] gi|262028774|gb|EEY47428.1| exodeoxyribonuclease V beta chain [Vibrio cholerae INDRE 91/1] gi|297541005|gb|EFH77059.1| exodeoxyribonuclease V, beta subunit [Vibrio cholerae MAK 757] Length = 1208 Score = 38.9 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 23/132 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + A D +L + + + +D + A LL++ + TIH F Sbjct: 85 LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137 Query: 140 CEAIMQQFPLEA 151 C+ ++ Q E+ Sbjct: 138 CQRMLTQNAFES 149 >gi|310286974|ref|YP_003938232.1| ATP-dependent DNA helicase, UvrD/REP helicase [Bifidobacterium bifidum S17] gi|309250910|gb|ADO52658.1| ATP-dependent DNA helicase, UvrD/REP helicase [Bifidobacterium bifidum S17] Length = 1400 Score = 38.9 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 31/53 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT+ + +R++ L+ +L LT T+ AA+E+ RV + A Sbjct: 26 VVAGAGSGKTYTMTRRIINLIAQGVPAERILGLTFTRKAASELLSRVSAAVLA 78 >gi|296110659|ref|YP_003621040.1| ATP-dependent DNA helicase PcrA [Leuconostoc kimchii IMSNU 11154] gi|295832190|gb|ADG40071.1| ATP-dependent DNA helicase PcrA [Leuconostoc kimchii IMSNU 11154] Length = 749 Score = 38.9 bits (89), Expect = 0.55, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT +L R+ L+ N P +L +T T AA EM R+ Sbjct: 27 IMAGAGSGKTRVLTHRIAHLVQDLNVFPWRILAITFTNKAAKEMRERI 74 >gi|145225243|ref|YP_001135921.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK] gi|145217729|gb|ABP47133.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK] Length = 1091 Score = 38.9 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLL 66 E S + L T+ + + + P V A AG+GKT + RV+ L+AN A P +L Sbjct: 10 ELSRALGLFEPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYATPGEVL 68 Query: 67 CLTHTKAAAAEMSHRV 82 LT T+ AA ++ RV Sbjct: 69 GLTFTRKAAGQLLRRV 84 >gi|108798375|ref|YP_638572.1| UvrD/REP helicase [Mycobacterium sp. MCS] gi|119867472|ref|YP_937424.1| UvrD/REP helicase [Mycobacterium sp. KMS] gi|108768794|gb|ABG07516.1| UvrD/REP helicase [Mycobacterium sp. MCS] gi|119693561|gb|ABL90634.1| UvrD/REP helicase [Mycobacterium sp. KMS] Length = 1091 Score = 38.9 bits (89), Expect = 0.55, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Query: 1 MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59 M S E + + L + T + + + P V A AG+GKT + RV+ L+AN Sbjct: 1 MTVRYSPAELASALGLFAPTDEQAAVIAAPPGPVVVIAGAGAGKTETMAARVV-WLVANG 59 Query: 60 -AHPSTLLCLTHTKAAAAEMSHRV 82 A P +L LT T+ AA ++ RV Sbjct: 60 YATPGQVLGLTFTRKAAGQLLRRV 83 >gi|8928266|sp|Q9S3Q0|PCRA_LEUCI RecName: Full=ATP-dependent DNA helicase pcrA gi|5762478|gb|AAD51119.1|AF176554_1 DNA helicase PcrA [Leuconostoc citreum] Length = 749 Score = 38.9 bits (89), Expect = 0.55, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 + A AGSGKT +L R+ L+ N P +L +T T AA EM R+ +++ Sbjct: 27 IMAGAGSGKTRVLTHRIAHLVQDLNVFPWRILAITFTNKAAREMRERIAALLS 79 >gi|161829860|ref|YP_001595927.1| DNA-dependent helicase II [Coxiella burnetii RSA 331] gi|161761727|gb|ABX77369.1| DNA helicase II [Coxiella burnetii RSA 331] Length = 720 Score = 38.9 bits (89), Expect = 0.55, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 + P V A AGSGKT +L R+ L+ N P ++L +T T AA EM R+ Sbjct: 19 TSPFDHVLVLAGAGSGKTRVLTHRIAWLIQQKNVSPYSILAVTFTNKAAYEMRGRI 74 >gi|310831416|ref|YP_003970059.1| putative UvrD/REP helicase [Cafeteria roenbergensis virus BV-PW1] gi|309386600|gb|ADO67460.1| putative UvrD/REP helicase [Cafeteria roenbergensis virus BV-PW1] Length = 884 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 +D + +++L+ D + V A GSGKTH L+ RV RL+ N P ++ +T Sbjct: 29 LDWNNYDNNQKLVIQDNSDVILVEAYPGSGKTHTLLGRVKRLVSEN--PLLLPKMIIITF 86 Query: 71 TKAAAAEMSHRV 82 TK A E+ ++ Sbjct: 87 TKKAGEELREKI 98 >gi|262404646|ref|ZP_06081201.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC586] gi|262349678|gb|EEY98816.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC586] Length = 1208 Score = 38.9 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 23/132 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + A D +L + + + +D + A LL++ + TIH F Sbjct: 85 LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137 Query: 140 CEAIMQQFPLEA 151 C+ ++ Q E+ Sbjct: 138 CQRMLTQNAFES 149 >gi|227874457|ref|ZP_03992633.1| possible ATP-dependent DNA helicase PcrA [Oribacterium sinus F0268] gi|227839685|gb|EEJ50139.1| possible ATP-dependent DNA helicase PcrA [Oribacterium sinus F0268] Length = 622 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 27/50 (54%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 A V A GSGKT +L +R+ LL +L L+ T+A++ EM R Sbjct: 35 ALVVAGPGSGKTTVLTERLCTLLERGVPAEKILLLSFTRASSKEMEERFF 84 >gi|212219550|ref|YP_002306337.1| DNA-dependent helicase II [Coxiella burnetii CbuK_Q154] gi|212013812|gb|ACJ21192.1| DNA helicase II [Coxiella burnetii CbuK_Q154] Length = 723 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 + P V A AGSGKT +L R+ L+ N P ++L +T T AA EM R+ Sbjct: 22 TSPFDHVLVLAGAGSGKTRVLTHRIAWLIQQKNVSPYSILAVTFTNKAAYEMRGRI 77 >gi|212213503|ref|YP_002304439.1| DNA-dependent helicase II [Coxiella burnetii CbuG_Q212] gi|215919328|ref|NP_821025.2| DNA-dependent helicase II [Coxiella burnetii RSA 493] gi|206584213|gb|AAO91539.2| DNA helicase II [Coxiella burnetii RSA 493] gi|212011913|gb|ACJ19294.1| DNA helicase II [Coxiella burnetii CbuG_Q212] Length = 723 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 + P V A AGSGKT +L R+ L+ N P ++L +T T AA EM R+ Sbjct: 22 TSPFDHVLVLAGAGSGKTRVLTHRIAWLIQQKNVSPYSILAVTFTNKAAYEMRGRI 77 >gi|149184424|ref|ZP_01862742.1| DNA and RNA helicase [Erythrobacter sp. SD-21] gi|148831744|gb|EDL50177.1| DNA and RNA helicase [Erythrobacter sp. SD-21] Length = 196 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R+ L+ A PS +LC+T T AA EM RV Sbjct: 42 AGAGTGKTAALTARLAHLIATRRAWPSEILCVTFTNKAAREMRERV 87 >gi|331006665|ref|ZP_08329945.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium IMCC1989] gi|330419518|gb|EGG93904.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium IMCC1989] Length = 745 Score = 38.9 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 S P + + A AGSGKT +LV R+ L+ + + P +++ +T T AA EM R+ +++ Sbjct: 19 SAPACNQLILAGAGSGKTRVLVHRIAWLIQVEHVSPHSIMSVTFTNKAAREMRGRLEDLL 78 >gi|317508740|ref|ZP_07966393.1| ATP-dependent DNA helicase PcrA [Segniliparus rugosus ATCC BAA-974] gi|316252988|gb|EFV12405.1| ATP-dependent DNA helicase PcrA [Segniliparus rugosus ATCC BAA-974] Length = 804 Score = 38.9 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT ++ +RV LL A P +L +T T AA E+ RV Sbjct: 37 IIAGAGSGKTSVITRRVAWLLAERQARPGEILAITFTNKAAGELKERV 84 >gi|315641090|ref|ZP_07896169.1| ATP-dependent DNA helicase PcrA [Enterococcus italicus DSM 15952] gi|315483098|gb|EFU73615.1| ATP-dependent DNA helicase PcrA [Enterococcus italicus DSM 15952] Length = 754 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 10/77 (12%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI---------IT 87 A AGSGKT +L RV L+ + +P +L +T T AA EM R+ + I+ Sbjct: 31 AGAGSGKTRVLTHRVAYLIQEKDVNPWNILAITFTNKAAREMRERIHALVGPESEDIWIS 90 Query: 88 AWSHLSDEILSAEITKI 104 + + IL E+ KI Sbjct: 91 TFHSMCVRILRREVEKI 107 >gi|290782532|gb|AAF38900.2| exodeoxyribonuclease V, beta chain, putative [Chlamydia muridarum Nigg] Length = 1026 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 28/137 (20%) Query: 30 PTRSA----WVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVL 83 PT S ++ A+AG+GKT + Q +LR LL T +L +T T AA E+ R+ Sbjct: 9 PTTSVSGKFFLEASAGTGKTFTIEQVILRSLLEGNVEQTKNILVVTFTNAATNELKLRIQ 68 Query: 84 EII--------TAWSHLSDEI---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 E + A SH + +S++ TK+ K K R+ L T+ E + Sbjct: 69 ESLKQALTLFSQALSHPETPLPPYVSSQETKV------KQLYXKXRNSLATLDE----MN 118 Query: 133 VQTIHAFCEAIMQQ-FP 148 + TIH C ++Q FP Sbjct: 119 IFTIHGJCRFTLEQHFP 135 >gi|257052990|ref|YP_003130823.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940] gi|256691753|gb|ACV12090.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940] Length = 959 Score = 38.9 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 43/163 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AG+GKT + +R LL P +L +T T AA EM RV+ Sbjct: 23 VDAGAGTGKTFAITRRYANLLSEGYEPDDVLLVTFTNNAATEMKERVV------------ 70 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 ++ + + + + P + T H+FC ++ ++ +A S Sbjct: 71 -------------------ARCDYSMSALRDAP----ISTFHSFCHDLLLEYGADA--PS 105 Query: 156 HFAIADE-EQSKKLIE----EAKK-STLASIMLDNNEELKKAF 192 + I D+ QS +L+E EA + T S +D + E + F Sbjct: 106 YLGIDDQITQSTQLLENEVIEADRFRTFLSQFVDAHPEHEAVF 148 >gi|254586149|ref|XP_002498642.1| ZYRO0G15224p [Zygosaccharomyces rouxii] gi|238941536|emb|CAR29709.1| ZYRO0G15224p [Zygosaccharomyces rouxii] Length = 1161 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 DP + V A G+GKT +L RV L+L + P ++ T T AA EM R++ ++ Sbjct: 25 DPDLAVQVIAGPGTGKTKVLTSRVAYLMLHHKIRPQDIIVTTFTNKAAKEMIDRLVSML 83 >gi|85711556|ref|ZP_01042614.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Idiomarina baltica OS145] gi|85694708|gb|EAQ32648.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Idiomarina baltica OS145] Length = 1230 Score = 38.9 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 38/159 (23%), Positives = 79/159 (49%), Gaps = 20/159 (12%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLL-------ANAH------PSTLLCLTHTKAAAAEMS 79 S + A+AG+GKT+ + +RL++ +NA P +L +T TKAA E+S Sbjct: 16 SRLIEASAGTGKTYTIAALYVRLVIGMRADSDSNAALETPLLPRNILVMTFTKAATEELS 75 Query: 80 HRVLEIITAWSHL--SDEILSAE--ITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQ 134 R+ + + D+ ++A+ +T+++ + + ++ LL E+ V+ Sbjct: 76 DRIRARLAEAARYFRDDDSVAADPFLTQLRATSEAQGESLNYLARLLELASESMDEAAVK 135 Query: 135 TIHAFCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEE 171 TIH +C++++++ F + T + DEE ++ E+ Sbjct: 136 TIHGWCQSMLKEHAFASGSLFTQNVETDDEELRRQAAED 174 >gi|120552955|ref|YP_957306.1| exodeoxyribonuclease V, beta subunit [Marinobacter aquaeolei VT8] gi|120322804|gb|ABM17119.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Marinobacter aquaeolei VT8] Length = 1241 Score = 38.9 bits (89), Expect = 0.56, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 21/161 (13%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPS----------TLLCLTHTKAAAAEMSHRV 82 SA + A+AG+GKT + +RL+L + LL +T T+AA E+ R+ Sbjct: 22 SALIEASAGTGKTFTIAILYVRLVLGHGQSEDSPLQNLLPPNLLVVTFTEAATKELRDRI 81 Query: 83 LEIIT----AWSHLSDEI----LSAEITKIQGKK-PNKSDMSKARHLLITILETPGGLKV 133 +T +S +D + +A I K++ P+ + + R L+ E V Sbjct: 82 RTRLTQAAEVFSEAADSLEPTPETALIHKLRDDSYPDPASWPECRKKLLLAAEWMDEAAV 141 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 TIH FC ++ + ++ S F + E +L+E+ + Sbjct: 142 STIHGFCNRMLSEHAFDSG--SLFKLTLETDQSELLEDVAR 180 >gi|303228659|ref|ZP_07315484.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Veillonella atypica ACS-134-V-Col7a] gi|302516639|gb|EFL58556.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Veillonella atypica ACS-134-V-Col7a] Length = 861 Score = 38.9 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 44/190 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 +Q + + R+ + A+AG+GKT+ L RV ++ + +LC+T T AA EM R Sbjct: 7 QQRVIDELDRNILLLASAGTGKTNTLAYRVAHIIESGRCEAHQILCMTFTNKAAQEMKSR 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + ++ +P K+ +++ T H+FC Sbjct: 67 IESLV--------------------GQPAKA------------------VEISTFHSFCF 88 Query: 142 AIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 ++QQ + ++ + I DEE K+L K + + + + K + + E + Sbjct: 89 YVLQQEGKRDESLYTDVTIFDEEDCKELYLPYKPRNMRDMNFASLISMVKEYRSVYEFYS 148 Query: 201 DEDIETLISD 210 E+LI D Sbjct: 149 ----ESLIDD 154 >gi|241664737|ref|YP_002983097.1| UvrD/REP helicase [Ralstonia pickettii 12D] gi|240866764|gb|ACS64425.1| UvrD/REP helicase [Ralstonia pickettii 12D] Length = 706 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++ Q++ L+L P + +T T AA EM RV +++ Sbjct: 26 VLAGAGSGKTRVITQKIAHLILDKGFEPKHIAAVTFTNKAAKEMQERVAKLMDG 79 >gi|238026680|ref|YP_002910911.1| exodeoxyribonuclease V subunit beta [Burkholderia glumae BGR1] gi|237875874|gb|ACR28207.1| Exodeoxyribonuclease V, beta subunit [Burkholderia glumae BGR1] Length = 1249 Score = 38.9 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 54/131 (41%), Gaps = 33/131 (25%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 28 IEASAGTGKTWNICALYVRLLLERDLDADQILVVTFTKAATAELHERIRARLAQLAHALD 87 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL-------------------KVQT 135 T G P + L T L GG+ + T Sbjct: 88 -------TGDHGGDPFVAK------LFETTLGPQGGIGTELAAKRVRRALRKFDQAAIHT 134 Query: 136 IHAFCEAIMQQ 146 IHAFC+ +Q+ Sbjct: 135 IHAFCQRALQE 145 >gi|269955587|ref|YP_003325376.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894] gi|269304268|gb|ACZ29818.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894] Length = 1192 Score = 38.9 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRV 82 P V A AGSGKT + RV+ L+AN P +L LT T+ AA E+ RV Sbjct: 86 PLEPTLVVAGAGSGKTETMAARVV-WLIANGLVEPEQVLGLTFTRKAAGELQTRV 139 >gi|218666396|ref|YP_002425609.1| ATP-dependent DNA helicase, UvrD/REP family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218518609|gb|ACK79195.1| ATP-dependent DNA helicase, UvrD/REP family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 745 Score = 38.9 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 37/68 (54%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +I +++ +AS A V A AG+GKT ++ R L L+ + S +L LT ++ AA Sbjct: 1 MIILDENQHRVASHKEGPALVLAGAGAGKTASIIGRTLELVESGVPSSRILLLTFSRKAA 60 Query: 76 AEMSHRVL 83 EM R + Sbjct: 61 REMRERAM 68 >gi|257061893|ref|YP_003139781.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8802] gi|256592059|gb|ACV02946.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8802] Length = 781 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 20/144 (13%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+ P ++L +T T AA EM R+ + Sbjct: 32 VVAGAGSGKTRALTYRIAHLISYHQVEPESILAVTFTNKAAREMKERI-----------E 80 Query: 95 EILSAEIT-KIQGKKPNKSDMSKARHLLITILE-TPGGLKVQTIHAFCEAIMQ------Q 146 ++ + E+ K G + + + + + LL + + T L + T H+ C I++ Q Sbjct: 81 KLFAQEMAFKKHGIRFDLLNEYEQKQLLSKVYKSTTKKLWIGTFHSLCTRILRYDINKYQ 140 Query: 147 FPLEANITSHFAIADEEQSKKLIE 170 +F+I DE ++ L++ Sbjct: 141 DERGRQWQRNFSIFDESDAQSLVK 164 >gi|153206879|ref|ZP_01945697.1| DNA helicase II [Coxiella burnetii 'MSU Goat Q177'] gi|165918247|ref|ZP_02218333.1| DNA helicase II [Coxiella burnetii RSA 334] gi|120576952|gb|EAX33576.1| DNA helicase II [Coxiella burnetii 'MSU Goat Q177'] gi|165918107|gb|EDR36711.1| DNA helicase II [Coxiella burnetii RSA 334] Length = 720 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 + P V A AGSGKT +L R+ L+ N P ++L +T T AA EM R+ Sbjct: 19 TSPFDHVLVLAGAGSGKTRVLTHRIAWLIQQKNVSPYSILAVTFTNKAAYEMRGRI 74 >gi|194335096|ref|YP_002016956.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271] gi|194312914|gb|ACF47309.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271] Length = 984 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 32/116 (27%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D T A AGSGK+ L R+ RL+ A P ++ T T+ AA + RV Sbjct: 25 DDTNEILCLACAGSGKSRTLSFRIARLIHEGAKPENIIAFTFTEKAAESIKRRV------ 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 S + KA L + ++ G + + TIHAFC+ ++ Sbjct: 79 ----------------------ASALEKA-GLPVALV---GAMYIGTIHAFCQNLL 108 >gi|294012133|ref|YP_003545593.1| DNA helicase II [Sphingobium japonicum UT26S] gi|292675463|dbj|BAI96981.1| DNA helicase II [Sphingobium japonicum UT26S] Length = 758 Score = 38.9 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 9/68 (13%) Query: 28 SDPTRSAWVS--------ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++P R A +S A AG+GKT L R+ L+ A+PS +L +T T AA EM Sbjct: 18 NEPQREAVLSTEGPVLVLAGAGTGKTAALTARLAHLIATRRAYPSEILAVTFTNKAAREM 77 Query: 79 SHRVLEII 86 RV +I Sbjct: 78 RERVGRMI 85 >gi|237842345|ref|XP_002370470.1| uvrD/REP helicase domain-containing protein [Toxoplasma gondii ME49] gi|211968134|gb|EEB03330.1| uvrD/REP helicase domain-containing protein [Toxoplasma gondii ME49] gi|221502602|gb|EEE28322.1| uvrD/REP helicase domain-containing protein, putative [Toxoplasma gondii VEG] Length = 2851 Score = 38.9 bits (89), Expect = 0.57, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 HS+ +S+ + +LA P + V A GSGKT + R+LRLLL P +L L Sbjct: 722 HSKIFGQLSEEQRRVVLA--PAHANLCVIAGPGSGKTTAITARILRLLLEGEGP--ILAL 777 Query: 69 THTKAAAAEMSHRVLE 84 T T+ A E+ RV++ Sbjct: 778 TFTRRGAEELRTRVVD 793 >gi|325479235|gb|EGC82331.1| putative ATP-dependent DNA helicase PcrA [Anaerococcus prevotii ACS-065-V-Col13] Length = 731 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA-WSHL 92 V A AGSGKT +L + L+ N P ++ +T T AA EM R+ ++ SHL Sbjct: 23 VLAGAGSGKTRVLTTSIAYLIEEKNIDPRNIIAITFTNKAANEMKERISNLLNMDVSHL 81 >gi|220933272|ref|YP_002512171.1| DNA helicase II [Thioalkalivibrio sp. HL-EbGR7] gi|219994582|gb|ACL71184.1| DNA helicase II [Thioalkalivibrio sp. HL-EbGR7] Length = 721 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 +++DP V A AGSGKT +L R+ L+ + P ++L +T T AAAEM R+ Sbjct: 18 VSADPG-PVLVLAGAGSGKTRVLTHRIAWLIQVEGLSPHSILAVTFTNKAAAEMRGRI 74 >gi|218248831|ref|YP_002374202.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8801] gi|218169309|gb|ACK68046.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8801] Length = 781 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 20/144 (13%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+ P ++L +T T AA EM R+ + Sbjct: 32 VVAGAGSGKTRALTYRIAHLISYHQVEPESILAVTFTNKAAREMKERI-----------E 80 Query: 95 EILSAEIT-KIQGKKPNKSDMSKARHLLITILE-TPGGLKVQTIHAFCEAIMQ------Q 146 ++ + E+ K G + + + + + LL + + T L + T H+ C I++ Q Sbjct: 81 KLFAQEMAFKKHGIRFDLLNEYEQKQLLSKVYKSTTKKLWIGTFHSLCTRILRYDINKYQ 140 Query: 147 FPLEANITSHFAIADEEQSKKLIE 170 +F+I DE ++ L++ Sbjct: 141 DERGRQWQRNFSIFDESDAQSLVK 164 >gi|166154823|ref|YP_001654941.1| DNA helicase [Chlamydia trachomatis 434/Bu] gi|166155698|ref|YP_001653953.1| DNA helicase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301336102|ref|ZP_07224346.1| DNA helicase [Chlamydia trachomatis L2tet1] gi|165930811|emb|CAP04309.1| DNA helicase [Chlamydia trachomatis 434/Bu] gi|165931686|emb|CAP07263.1| DNA helicase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 634 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L S+ + Q+ A + P + V A AG+GKT ++ R+L L+ + P +L +T T Sbjct: 2 LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILHLIEESRLDPKQILAITFTNK 61 Query: 74 AAAEMSHRV 82 AA E+ R+ Sbjct: 62 AANELKERI 70 >gi|163738701|ref|ZP_02146115.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107] gi|161388029|gb|EDQ12384.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107] Length = 787 Score = 38.9 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ LL A P+ +L +T T AA EM RV Sbjct: 50 AGAGTGKTKALTARIVHLLTTGTAKPNEILAVTFTNKAAREMKERV 95 >gi|237751626|ref|ZP_04582106.1| ATP-dependent DNA helicase [Helicobacter bilis ATCC 43879] gi|229372992|gb|EEO23383.1| ATP-dependent DNA helicase [Helicobacter bilis ATCC 43879] Length = 677 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 23 EQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 EQ A + P V A+AG+GKT +V R+ L+ + P +L LT T A+ EM R Sbjct: 6 EQYKACNAPLGHNLVIASAGTGKTSTIVGRIATLIERSIKPHEILLLTFTNKASHEMIER 65 Query: 82 VLEII 86 V +I Sbjct: 66 VGKIF 70 >gi|224282512|ref|ZP_03645834.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171] gi|313139664|ref|ZP_07801857.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171] gi|313132174|gb|EFR49791.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171] Length = 1401 Score = 38.9 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 31/53 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT+ + +R++ L+ +L LT T+ AA+E+ RV + A Sbjct: 26 VVAGAGSGKTYTMTRRIINLIAQGVPAERILGLTFTRKAASELLSRVSAAVLA 78 >gi|163741587|ref|ZP_02148978.1| DNA helicase II, putative [Phaeobacter gallaeciensis 2.10] gi|161385321|gb|EDQ09699.1| DNA helicase II, putative [Phaeobacter gallaeciensis 2.10] Length = 786 Score = 38.9 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ LL A P+ +L +T T AA EM RV Sbjct: 50 AGAGTGKTKALTARIVHLLTTGTAKPNEILAVTFTNKAAREMKERV 95 >gi|149375448|ref|ZP_01893218.1| Exodeoxyribonuclease V, beta subunit [Marinobacter algicola DG893] gi|149360153|gb|EDM48607.1| Exodeoxyribonuclease V, beta subunit [Marinobacter algicola DG893] Length = 1234 Score = 38.9 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 57/141 (40%), Gaps = 19/141 (13%) Query: 30 PTR-SAWVSANAGSGKTHILVQRVLRLLLAN----------AHPSTLLCLTHTKAAAAEM 78 P R S + A+AG+GKT L +RL+L + P LL +T T+AA E+ Sbjct: 14 PLRGSQLIEASAGTGKTFTLALLYVRLVLGHRTVAEPLGEGIMPPNLLVVTFTEAATKEL 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKP--------NKSDMSKARHLLITILETPGG 130 R+ +T + L T + K P +D R L+ E Sbjct: 74 RDRIRARLTEAAALFAAEPDTADTTVMSKDPLVNLRNACPAADWPACRRKLLLAAEWMDE 133 Query: 131 LKVQTIHAFCEAIMQQFPLEA 151 V TIH +C ++ + ++ Sbjct: 134 AAVSTIHGWCNRMLSEHAFDS 154 >gi|91774719|ref|YP_544475.1| ATP-dependent DNA helicase UvrD [Methylobacillus flagellatus KT] gi|91708706|gb|ABE48634.1| ATP-dependent DNA helicase UvrD [Methylobacillus flagellatus KT] Length = 731 Score = 38.9 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 13 TIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 T L+ +QL A + P +SA + A AGSGKT +L R+ L+ P +L +T Sbjct: 8 TTTLLDGLNEKQLEAVTLPHQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPHGILSVTF 67 Query: 71 TKAAAAEMSHRV 82 T AA EM R+ Sbjct: 68 TNKAAKEMLTRL 79 >gi|296270932|ref|YP_003653564.1| UvrD/REP helicase [Thermobispora bispora DSM 43833] gi|296093719|gb|ADG89671.1| UvrD/REP helicase [Thermobispora bispora DSM 43833] Length = 1128 Score = 38.9 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPS 63 S +E + + + + T + + + P V A AGSGK+ + RV+ L+AN P Sbjct: 13 SPEEIAAKLGIPAPTPEQAEVIAAPLEPMVVVAGAGSGKSETMAGRVV-WLVANGFVRPD 71 Query: 64 TLLCLTHTKAAAAEMSHRV 82 +L LT T AAAE++ RV Sbjct: 72 QVLGLTFTNKAAAELAERV 90 >gi|198283952|ref|YP_002220273.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665213|ref|YP_002426586.1| ATP-dependent DNA helicase Rep [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248473|gb|ACH84066.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517426|gb|ACK78012.1| ATP-dependent DNA helicase Rep [Acidithiobacillus ferrooxidans ATCC 23270] Length = 662 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 12/88 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE---------- 84 V A AGSGKT ++ ++++ L+ P + +T T AA EM RV E Sbjct: 24 VLAGAGSGKTRVITRKIVHLIREQQVAPRHICAVTFTNKAAREMKSRVGEALQGHSSRGL 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKS 112 +++ + HL +IL +I ++ G + N S Sbjct: 84 MVSTFHHLGLQILRKDIERL-GYRGNFS 110 >gi|206559483|ref|YP_002230244.1| putative exodeoxyribonuclease V beta chain [Burkholderia cenocepacia J2315] gi|198035521|emb|CAR51400.1| putative exodeoxyribonuclease V beta chain [Burkholderia cenocepacia J2315] Length = 1235 Score = 38.9 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 25 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 84 Query: 95 ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + A + + D A + L + TIHAFC+ +Q+ Sbjct: 85 TGDDGGDPFIARLLETTLGDGGALDPETAVKRIRRALRAFDQAAIHTIHAFCQRALQE 142 >gi|311063850|ref|YP_003970575.1| ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010] gi|310866169|gb|ADP35538.1| ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010] Length = 1400 Score = 38.9 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 31/53 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT+ + +R++ L+ +L LT T+ AA+E+ RV + A Sbjct: 26 VVAGAGSGKTYTMTRRIINLIAQGVPAERILGLTFTRKAASELLSRVSAAVLA 78 >gi|254489019|ref|ZP_05102224.1| UvrD/REP helicase domain protein [Roseobacter sp. GAI101] gi|214045888|gb|EEB86526.1| UvrD/REP helicase domain protein [Roseobacter sp. GAI101] Length = 806 Score = 38.9 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ L+ A P+ +L +T T AA EM +RV Sbjct: 50 AGAGTGKTKALTARIVHLMNTGRARPNEILAVTFTNKAAREMKNRV 95 >gi|62261380|gb|AAX77985.1| unknown protein [synthetic construct] Length = 706 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++++++ L+ +P+ ++L +T T AA EM RV Sbjct: 48 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV 95 >gi|89074565|ref|ZP_01161037.1| hypothetical helicase IV [Photobacterium sp. SKA34] gi|89049669|gb|EAR55228.1| hypothetical helicase IV [Photobacterium sp. SKA34] Length = 693 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AG+GKT +LV R L+ + A P +L L + AA EMS R+ E ++ ++ Sbjct: 214 VLAGAGTGKTSVLVARAGYLIASQQAVPEDILMLAFGRKAAEEMSERMGEKVSDRVKVAT 273 Query: 95 --EILSAEITKIQGKKPN 110 + S I +++ +KPN Sbjct: 274 FHSLGSQIIAEVEKEKPN 291 >gi|325288901|ref|YP_004265082.1| ATP-dependent DNA helicase PcrA [Syntrophobotulus glycolicus DSM 8271] gi|324964302|gb|ADY55081.1| ATP-dependent DNA helicase PcrA [Syntrophobotulus glycolicus DSM 8271] Length = 745 Score = 38.9 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 9/80 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI---------I 86 + A AGSGKT L R+ L+ + +L +T T AA EM RVL + I Sbjct: 24 ILAGAGSGKTKALTYRIAHLIAKGVNSWNILAITFTNKAAREMRERVLALVGSEGEGLWI 83 Query: 87 TAWSHLSDEILSAEITKIQG 106 + + +IL EI ++G Sbjct: 84 STFHSACVKILRREIAHLEG 103 >gi|295702475|ref|YP_003595550.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium DSM 319] gi|294800134|gb|ADF37200.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium DSM 319] Length = 749 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ L+ P +L +T T AA EM RV I+ Sbjct: 39 AGAGSGKTRVLTHRIAFLMAEKEVAPWNILAITFTNKAAREMRERVSNIVGG 90 >gi|270291088|ref|ZP_06197311.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici 7_4] gi|270280484|gb|EFA26319.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici 7_4] Length = 757 Score = 38.9 bits (89), Expect = 0.59, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 56/149 (37%), Gaps = 43/149 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L RV L+ + +P +L +T T AA EM RV ++ Sbjct: 27 IMAGAGSGKTRVLTHRVAYLIEEKDVNPWNILAITFTNKAAREMRERVANLLG------- 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E + V T HA C I+++ + Sbjct: 80 -------------------------------EVASEIWVSTFHALCVRILRRDIEQIGYN 108 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLD 183 F+IAD + + LI K LA + D Sbjct: 109 RAFSIADPSEQRTLI----KHVLADLNYD 133 >gi|325846882|ref|ZP_08169739.1| UvrD/REP helicase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481124|gb|EGC84168.1| UvrD/REP helicase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 860 Score = 38.9 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMS 79 K + L+ D A V A G+GKT +VQ+++ L+ P+ +L T TK AA E+ Sbjct: 4 KKQNLIVDDSKYPAAVLAGPGTGKTFTIVQKIISLIKNEGLSPNKILVTTFTKKAANELI 63 Query: 80 HRV 82 RV Sbjct: 64 ERV 66 >gi|317047247|ref|YP_004114895.1| UvrD/REP helicase [Pantoea sp. At-9b] gi|316948864|gb|ADU68339.1| UvrD/REP helicase [Pantoea sp. At-9b] Length = 1130 Score = 38.9 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 27/50 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 + A G+GKT LV RV LL P +L LT + AA EM+ R+ + Sbjct: 214 LEAGPGTGKTQTLVGRVKGLLNEGVDPRKILLLTFSNKAAGEMAERIARV 263 >gi|154314455|ref|XP_001556552.1| hypothetical protein BC1G_05321 [Botryotinia fuckeliana B05.10] gi|150848966|gb|EDN24159.1| hypothetical protein BC1G_05321 [Botryotinia fuckeliana B05.10] Length = 999 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 25/49 (51%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A GSGKTH L R LL P ++ T T AA EM R+ ++I Sbjct: 29 AGPGSGKTHTLTSRTAWLLQQGLQPCNIIVATFTVKAAREMKERIGKLI 77 >gi|57234053|ref|YP_181909.1| ATP-dependent DNA helicase PcrA [Dehalococcoides ethenogenes 195] gi|57224501|gb|AAW39558.1| ATP-dependent DNA helicase PcrA [Dehalococcoides ethenogenes 195] Length = 738 Score = 38.9 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 43/149 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A GSGKT ++ R+ L+ + +P ++ +T T AA EM R Sbjct: 25 ILAGPGSGKTRVITHRIAYLIKVVGINPHRIMAVTFTNKAAREMETR------------- 71 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 L + G L + T HA C I++Q L + Sbjct: 72 -------------------------LNLLAPSAAGRLTMGTFHAICARILRQDGLPLGVP 106 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLD 183 + F I D++ + LI++A +A + LD Sbjct: 107 ADFVIYDDDDQQSLIKQA----MAELELD 131 >gi|56419918|ref|YP_147236.1| hypothetical protein GK1383 [Geobacillus kaustophilus HTA426] gi|56379760|dbj|BAD75668.1| hypothetical protein [Geobacillus kaustophilus HTA426] Length = 807 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 9/125 (7%) Query: 36 VSANAGSGKTHILVQRVLRL--LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 V A AG+GKT ++ R++ L + + +++ +T T AA+ M ++LE I + L+ Sbjct: 117 VKAGAGTGKTTTMINRIMFLKHMQGDLDLRSVVMITFTNEAASNMRSKLLEKIKNYYDLT 176 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF-------CEAIMQQ 146 + E + G+ + S AR L+T +T G + + ++ E + Q Sbjct: 177 KDKKYLEWMEEAGRMFIGTIHSFAREFLVTEGQTLGFSRSMEVRSYKHERRRLIEKYIDQ 236 Query: 147 FPLEA 151 F +E Sbjct: 237 FSVEC 241 >gi|16082036|ref|NP_394460.1| DNA helicase II (UvrD) related protein [Thermoplasma acidophilum DSM 1728] gi|10640315|emb|CAC12129.1| DNA helicase II (UvrD) related protein [Thermoplasma acidophilum] Length = 885 Score = 38.9 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 30/51 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A G+GKT + Q+ L L+ + P+ +LC+T T AA M R+++ + Sbjct: 6 VIAGPGTGKTTSISQKYLELVQSGVDPNDILCITFTNKAAENMRSRIIKAL 56 >gi|325680777|ref|ZP_08160315.1| putative ATP-dependent nuclease subunit A [Ruminococcus albus 8] gi|324107557|gb|EGC01835.1| putative ATP-dependent nuclease subunit A [Ruminococcus albus 8] Length = 1234 Score = 38.9 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKAAAAEMSHRV 82 R VSA AGSGKT +L++R++RLL LL +T T AAA+M ++ Sbjct: 18 RGVTVSAAAGSGKTAVLIERIIRLLTDKEKKIPADKLLAVTFTIDAAAQMRDKL 71 >gi|212550653|ref|YP_002308970.1| exodeoxyribonuclease V beta subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548891|dbj|BAG83559.1| exodeoxyribonuclease V beta subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 1038 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 75/148 (50%), Gaps = 19/148 (12%) Query: 38 ANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVL-EIITAWSHLS 93 A+AGSGKT+ LV ++ LL + + +L ++ TK A EM R+L E+ + + Sbjct: 9 ASAGSGKTYTLVLEYIKCLLISDFSDYFQYILAVSFTKDATNEMKERILSELYGLALNTN 68 Query: 94 D--------EILSAEITKIQGKKPNKSDMS-KARHLLITILETPGGLKVQTIHAFCEAIM 144 D +IL E +G ++ ++ +A+ TI+ L + TI +F + I+ Sbjct: 69 DSKRFRSSLQILWEE----EGLHWDEKLINMRAKTAFQTIIHNYSRLNITTIDSFFQCII 124 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEA 172 + E ++HF++ E ++++I E+ Sbjct: 125 RSLVRELGYSNHFSL--ETNTQRVIRES 150 >gi|295836625|ref|ZP_06823558.1| UvrD/Rep family helicase [Streptomyces sp. SPB74] gi|197699603|gb|EDY46536.1| UvrD/Rep family helicase [Streptomyces sp. SPB74] Length = 1221 Score = 38.9 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Query: 23 EQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSH 80 EQL + P + A AGSGKT ++ RV+ L+ A P +L LT T AAAE++ Sbjct: 113 EQLHCVTAPPAPHVIVAGAGSGKTTVMAARVVWLVGTGAVAPEQVLGLTFTNKAAAELAD 172 Query: 81 RV 82 RV Sbjct: 173 RV 174 >gi|86608842|ref|YP_477604.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557384|gb|ABD02341.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 787 Score = 38.9 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 28/149 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS- 93 V A AGSGKT L R+ L+ P +L +T T AA EM R+ ++ Sbjct: 27 VVAGAGSGKTRALTHRIAYLVRHYRVDPGEILAVTFTNKAAREMKERIEQLFAEQEAQEQ 86 Query: 94 -----DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ--- 145 +E+ A+ T+++ S H I L + T H+ I++ Sbjct: 87 FGIPLEELEPAQATRLK---------SAVYHRWIK------PLWIGTFHSLFAQILRLEI 131 Query: 146 ---QFPLEANITSHFAIADEEQSKKLIEE 171 Q P T HF+I DE ++ L++E Sbjct: 132 EKYQDPKGRKWTRHFSIFDESDAQSLVKE 160 >gi|319947223|ref|ZP_08021457.1| exonuclease RexA [Streptococcus australis ATCC 700641] gi|319747271|gb|EFV99530.1| exonuclease RexA [Streptococcus australis ATCC 700641] Length = 1227 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 VSA+AGSGKT ++VQR+L L L T T AA E+ R+ Sbjct: 45 VSASAGSGKTFVMVQRILDQLHRGISIQQLFISTFTVKAATELKERL 91 >gi|284800229|ref|ZP_06390624.1| putative exodeoxyribonuclease V beta chain [Neisseria subflava NJ9703] gi|284795654|gb|EFC51001.1| putative exodeoxyribonuclease V beta chain [Neisseria subflava NJ9703] Length = 561 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 37/185 (20%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L +L +T TKAA AE+ R VL+++ Sbjct: 20 IEASAGTGKTYGIAALFTRLIVLEKKDIEKILVVTFTKAATAELKTRLRARLDEVLQVLN 79 Query: 88 AWSHLSDEI--LSAEITKI---QGKKPN------------KSDMSKARHLLITILETP-- 128 L E +S + K + K P+ + D ++ H LI L+ Sbjct: 80 EIQTLGGEPEHISDGLNKYYEKEKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKAALS 139 Query: 129 --GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE--------AKKSTLA 178 + TIH FC+ +++ + ++D+ + + LI A +TLA Sbjct: 140 QFDNASIYTIHGFCQRVLRDYAFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATDTTLA 199 Query: 179 SIMLD 183 ++ D Sbjct: 200 QLVFD 204 >gi|261211432|ref|ZP_05925720.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC341] gi|260839387|gb|EEX66013.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC341] Length = 1208 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 23/133 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-------NAHP---STLLCLTHTKAAAAEMSHRV--- 82 + A+AG+GKT+ + LRL++ +AHP +L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTYTIAGLYLRLVIGHGCVETRHAHPLSVDQILVVTFTEAATAELRDRIRRR 84 Query: 83 ---LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + A D +L + + + +D + A LL++ + TIH F Sbjct: 85 LHDARLAFARGASDDPLLRSLLAEF-------TDHNLAVSLLLSAERQMDEAAIFTIHGF 137 Query: 140 CEAIMQQFPLEAN 152 C+ ++ Q E+ Sbjct: 138 CQRMLTQNAFESG 150 >gi|257095814|ref|YP_003169455.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048338|gb|ACV37526.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 661 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 12/88 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEI--------- 85 V A AGSGKT ++ +++ L+ + PS + +T T AA EM RV + Sbjct: 21 VLAGAGSGKTRVITEKIAYLIESCGFSPSNIAAITFTNKAAREMQERVTRLLAGRPAKGL 80 Query: 86 -ITAWSHLSDEILSAEITKIQGKKPNKS 112 I+ + L IL E K G KPN S Sbjct: 81 TISTFHALGVRILREE-AKALGYKPNFS 107 >gi|222444703|ref|ZP_03607218.1| hypothetical protein METSMIALI_00316 [Methanobrevibacter smithii DSM 2375] gi|222434268|gb|EEE41433.1| hypothetical protein METSMIALI_00316 [Methanobrevibacter smithii DSM 2375] Length = 994 Score = 38.9 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A GSGKT ++++RV L+ +PS+LL +T T+ AA E+ R+ E I Sbjct: 20 VEAGPGSGKTRVIIERVKFLINELKVNPSSLLVITFTRKAANELKDRLSEDI 71 >gi|160914437|ref|ZP_02076652.1| hypothetical protein EUBDOL_00441 [Eubacterium dolichum DSM 3991] gi|158433595|gb|EDP11884.1| hypothetical protein EUBDOL_00441 [Eubacterium dolichum DSM 3991] Length = 729 Score = 38.9 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 39/144 (27%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 R + A AGSGKT ++ R+ L+ + +P+ +L +T T AA EM RV + Sbjct: 20 RHLRIIAGAGSGKTRVVTTRIAYLIEQCHIYPNKILAITFTNKAAREMKERVEGFLG--- 76 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 +T + + TIH+FC ++++ L Sbjct: 77 -----------------------------------DTAQAVMISTIHSFCVRLLREDILV 101 Query: 151 ANITSHFAIADEEQSKKLIEEAKK 174 +F I D + + ++ +A K Sbjct: 102 HGYPRNFTILDADDQRSILRDAYK 125 >gi|315924258|ref|ZP_07920482.1| ATP-dependent DNA helicase PcrA [Pseudoramibacter alactolyticus ATCC 23263] gi|315622419|gb|EFV02376.1| ATP-dependent DNA helicase PcrA [Pseudoramibacter alactolyticus ATCC 23263] Length = 736 Score = 38.9 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 3/70 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +D +++ + E LA++ + A AGSGKT ++ R+ +L A PS +L +T T Sbjct: 4 LDGLNEQQREAALATEG--PLLILAGAGSGKTRTIIHRIAYILEQGLAWPSQILAITFTN 61 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 62 KAAGEMRDRI 71 >gi|256821408|ref|YP_003145371.1| UvrD/REP helicase [Kangiella koreensis DSM 16069] gi|256794947|gb|ACV25603.1| UvrD/REP helicase [Kangiella koreensis DSM 16069] Length = 726 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 5/60 (8%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 P ++ V A AGSGKT +LV R+ L+ +AH ++L +T T AA EM RV +++ Sbjct: 21 PNKALLVLAGAGSGKTRVLVHRIAWLVQVEHISAH--SILAVTFTNKAAKEMLGRVEDML 78 >gi|221485205|gb|EEE23495.1| hypothetical protein TGGT1_105110 [Toxoplasma gondii GT1] Length = 2892 Score = 38.9 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 5/80 (6%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 HS+ +S+ + +LA P + V A GSGKT + R+LRLLL P +L L Sbjct: 756 HSKIFGQLSEEQRNVVLA--PAHANLCVIAGPGSGKTTAITARILRLLLEGEGP--ILAL 811 Query: 69 THTKAAAAEMSHRVLEIITA 88 T T+ A E+ RV++ +++ Sbjct: 812 TFTRRGAEELRTRVVDGLSS 831 >gi|212703872|ref|ZP_03312000.1| hypothetical protein DESPIG_01924 [Desulfovibrio piger ATCC 29098] gi|212672689|gb|EEB33172.1| hypothetical protein DESPIG_01924 [Desulfovibrio piger ATCC 29098] Length = 1234 Score = 38.9 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Query: 13 TIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 T+ S ++E L A T + V A G+GKT +LV R+ LL S LL +T T Sbjct: 537 TLGGFSPAQAEALTAGLETGTPVLVLAGPGAGKTRVLVGRLQYLLAQGVPASHLLAVTFT 596 Query: 72 KAAAAEMSHRV 82 + AA EM R+ Sbjct: 597 RRAAQEMRQRL 607 >gi|254367778|ref|ZP_04983799.1| ATP-dependent DNA helicase [Francisella tularensis subsp. holarctica 257] gi|134253589|gb|EBA52683.1| ATP-dependent DNA helicase [Francisella tularensis subsp. holarctica 257] Length = 671 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++++++ L+ +P+ ++L +T T AA EM RV Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV 69 >gi|318060452|ref|ZP_07979175.1| ATP-dependent DNA helicase [Streptomyces sp. SA3_actG] Length = 1171 Score = 38.9 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Query: 23 EQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 EQL + P + A AGSGKT ++ RV+ L+ P +L LT T AAAE++ Sbjct: 19 EQLACVTAPPAPHVIVAGAGSGKTTVMAARVVWLVGTGTVAPEQVLGLTFTNKAAAELAE 78 Query: 81 RV 82 RV Sbjct: 79 RV 80 >gi|297520068|ref|ZP_06938454.1| DNA helicase IV [Escherichia coli OP50] Length = 590 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 120 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 169 >gi|302521802|ref|ZP_07274144.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78] gi|302430697|gb|EFL02513.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78] Length = 1171 Score = 38.9 bits (89), Expect = 0.62, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Query: 23 EQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 EQL + P + A AGSGKT ++ RV+ L+ P +L LT T AAAE++ Sbjct: 19 EQLACVTAPPAPHVIVAGAGSGKTTVMAARVVWLVGTGTVAPEQVLGLTFTNKAAAELAE 78 Query: 81 RV 82 RV Sbjct: 79 RV 80 >gi|89256441|ref|YP_513803.1| ATP-dependent DNA helicase [Francisella tularensis subsp. holarctica LVS] gi|115314876|ref|YP_763599.1| ATP-dependent DNA helicase [Francisella tularensis subsp. holarctica OSU18] gi|156502543|ref|YP_001428608.1| ATP-dependent DNA helicase [Francisella tularensis subsp. holarctica FTNF002-00] gi|290953919|ref|ZP_06558540.1| ATP-dependent DNA helicase [Francisella tularensis subsp. holarctica URFT1] gi|295312719|ref|ZP_06803462.1| ATP-dependent DNA helicase [Francisella tularensis subsp. holarctica URFT1] gi|89144272|emb|CAJ79555.1| ATP-dependent DNA helicase [Francisella tularensis subsp. holarctica LVS] gi|115129775|gb|ABI82962.1| ATP-dependent DNA helicase [Francisella tularensis subsp. holarctica OSU18] gi|156253146|gb|ABU61652.1| ATP-dependent DNA helicase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 671 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++++++ L+ +P+ ++L +T T AA EM RV Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV 69 >gi|328676870|gb|AEB27740.1| ATP-dependent DNA helicase Rep [Francisella cf. novicida Fx1] Length = 671 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++++++ L+ +P+ ++L +T T AA EM RV Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV 69 >gi|302870989|ref|YP_003839625.1| UvrD/REP helicase [Caldicellulosiruptor obsidiansis OB47] gi|302573848|gb|ADL41639.1| UvrD/REP helicase [Caldicellulosiruptor obsidiansis OB47] Length = 955 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 30/127 (23%) Query: 37 SANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 SA+AG GKT + + L+ P+ ++C+T+T+ AA E+ +R II+ + Sbjct: 12 SASAGCGKTENIANLYIDLISQKKILPTEIVCITYTEKAARELKNR---IISKAKQRRLD 68 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +L+ I+KIQ ++TIH+FC +++ + A + + Sbjct: 69 LLT--ISKIQNS------------------------HIKTIHSFCMYLLRFYWAWAKVDA 102 Query: 156 HFAIADE 162 +F I E Sbjct: 103 NFKIVPE 109 >gi|114707166|ref|ZP_01440064.1| DNA helicase II [Fulvimarina pelagi HTCC2506] gi|114537362|gb|EAU40488.1| DNA helicase II [Fulvimarina pelagi HTCC2506] Length = 849 Score = 38.9 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Query: 23 EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 EQ A + T V A AG+GKT +L R+ +L A PS +L +T T AA EM Sbjct: 40 EQRAAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGRAWPSQILAVTFTNKAAREMKA 99 Query: 81 RV 82 R+ Sbjct: 100 RI 101 >gi|83309824|ref|YP_420088.1| superfamily I DNA/RNA helicase [Magnetospirillum magneticum AMB-1] gi|82944665|dbj|BAE49529.1| Superfamily I DNA and RNA helicase [Magnetospirillum magneticum AMB-1] Length = 864 Score = 38.9 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V + AG+GKT +L R+ +L +N A P L +T T AA EM RV +++ Sbjct: 156 VLSGAGTGKTKVLTSRLAHILASNLAQPWQCLAVTFTNRAAREMKERVGQLV 207 >gi|300932818|ref|ZP_07148074.1| putative ATP-dependent DNA helicase II [Corynebacterium resistens DSM 45100] Length = 690 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D+++ EQL A+ P + A AG+GKT + R+ L+ +P +L +T T Sbjct: 3 DILAGLDPEQLRAATAPRGPVAIIAGAGTGKTRTITHRIAHLVEGGYVNPDRVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITA 88 AAAE+ R+ + A Sbjct: 63 RAAAELRERLARMNVA 78 >gi|237719544|ref|ZP_04550025.1| ATP-dependent DNA helicase [Bacteroides sp. 2_2_4] gi|229451404|gb|EEO57195.1| ATP-dependent DNA helicase [Bacteroides sp. 2_2_4] Length = 575 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 45/176 (25%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAH-PSTLLC 67 ++ ID +++++ + +D + V A AGSGKT +L ++ LL N + P +L Sbjct: 2 NTNYIDELNESQCAAVTYNDG--PSLVIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T AA EM R+ + M +AR+L + Sbjct: 60 LTFTNKAAREMKERIARQVG--------------------------MERARYLWMG---- 89 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 T H+ I++ TS F I D SK L+ +S + + LD Sbjct: 90 -------TFHSIFSRILRAEATFIGFTSQFTIYDTADSKSLL----RSIIKEMGLD 134 >gi|124022671|ref|YP_001016978.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9303] gi|123962957|gb|ABM77713.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9303] Length = 1274 Score = 38.9 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 16/148 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV-------LEIIT 87 + A+AG+GKT L LRLL H S LL +T T+AAAAE+ R+ LE + Sbjct: 26 LEASAGTGKTFALAHLALRLLTEGGHQISELLVVTFTEAAAAELRSRIGQRLEHALEGLE 85 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHL----LITILETPGGLKVQTIHAFCEAI 143 A H + + ++ Q + N D+S+ RH L+ LE+ + TIH FC Sbjct: 86 ALDHGATD-KPPDLVLEQWLQCNGHDVSQ-RHQWISSLLVALESLDLADITTIHGFCRRT 143 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEE 171 +++ LE+ + D Q +L++E Sbjct: 144 LRRQALESGAVMDPRLDDSGQ--QLVQE 169 >gi|158319600|ref|YP_001512107.1| ATP-dependent DNA helicase PcrA [Alkaliphilus oremlandii OhILAs] gi|158139799|gb|ABW18111.1| ATP-dependent DNA helicase PcrA [Alkaliphilus oremlandii OhILAs] Length = 739 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 10/92 (10%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRS---------AWVSANAGSGKTHILVQRVLRLLLA 58 + H E I+ + K + +P + V A AGSGKT +L R+ L+ Sbjct: 2 EHHKENINSVHNEKESRYHTLNPMQKNAVLTTEGPVLVLAGAGSGKTRVLTHRIAYLVEE 61 Query: 59 NA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 P +L +T T AA EM RV ++ + Sbjct: 62 KGVSPYHILAITFTNKAAKEMKERVEALLGDY 93 >gi|89069676|ref|ZP_01157013.1| Putative uvrD/DNA Helicase II [Oceanicola granulosus HTCC2516] gi|89044756|gb|EAR50862.1| Putative uvrD/DNA Helicase II [Oceanicola granulosus HTCC2516] Length = 794 Score = 38.9 bits (89), Expect = 0.63, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ LL +A P+ +L +T T AA EM R+ Sbjct: 51 AGAGTGKTKALTTRIVHLLCTGSARPNEILAVTFTNKAAREMKSRI 96 >gi|319957110|ref|YP_004168373.1| uvrd/rep helicase [Nitratifractor salsuginis DSM 16511] gi|319419514|gb|ADV46624.1| UvrD/REP helicase [Nitratifractor salsuginis DSM 16511] Length = 685 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT L R+ LL P+ L LT T AA EM R L +I Sbjct: 24 AGAGSGKTKTLTTRLAYLLGEVGIDPANTLTLTFTNKAATEMRDRALRMI 73 >gi|291458664|ref|ZP_06598054.1| ATP-dependent DNA helicase PcrA [Oribacterium sp. oral taxon 078 str. F0262] gi|291419197|gb|EFE92916.1| ATP-dependent DNA helicase PcrA [Oribacterium sp. oral taxon 078 str. F0262] Length = 637 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 28/48 (58%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 A V A GSGKT +L +R RLL + +L L+ T+A+A E+ R Sbjct: 32 ALVLAGPGSGKTLVLTERAARLLQSGVPGEEILILSFTRASAEELRLR 79 >gi|254374203|ref|ZP_04989685.1| hypothetical protein FTDG_00366 [Francisella novicida GA99-3548] gi|151571923|gb|EDN37577.1| hypothetical protein FTDG_00366 [Francisella novicida GA99-3548] Length = 671 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++++++ L+ +P+ ++L +T T AA EM RV Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV 69 >gi|134302295|ref|YP_001122264.1| ATP-dependent DNA helicase [Francisella tularensis subsp. tularensis WY96-3418] gi|134050072|gb|ABO47143.1| ATP-dependent DNA helicase/UvrD/REP helicase [Francisella tularensis subsp. tularensis WY96-3418] Length = 671 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++++++ L+ +P+ ++L +T T AA EM RV Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV 69 >gi|33864183|ref|NP_895743.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313] gi|33635767|emb|CAE22092.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313] Length = 802 Score = 38.9 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 20/143 (13%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT L R+ L+ + A PS +L +T T AA EM R LE+ + Sbjct: 26 AGAGSGKTRALTHRIAHLIGEHGADPSQILAVTFTNKAAREMKER-LEL----------L 74 Query: 97 LSAEITKIQGKKP-NKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQ----QFPLE 150 L+ + + Q +P + + R L I E L + T HA +++ +F + Sbjct: 75 LAQRLAQSQFGQPWSTLPPVEQRQLRTRIYREVTKELWIGTFHALFARMLRYDIDKFKDK 134 Query: 151 ANI--TSHFAIADEEQSKKLIEE 171 + T F+I DE ++ L++E Sbjct: 135 EGLTWTKQFSIYDEADAQSLVKE 157 >gi|293557128|ref|ZP_06675682.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1039] gi|291600697|gb|EFF30995.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1039] Length = 745 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ L+ +P +L +T T AA EM RV I+ + Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILVS 81 >gi|260948414|ref|XP_002618504.1| hypothetical protein CLUG_01963 [Clavispora lusitaniae ATCC 42720] gi|238848376|gb|EEQ37840.1| hypothetical protein CLUG_01963 [Clavispora lusitaniae ATCC 42720] Length = 924 Score = 38.9 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 6/81 (7%) Query: 8 QEHSETI----DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAH 61 + HS T L S EQ +A++ + + A G+GKT +LV RV LLL Sbjct: 72 ENHSTTAPSVDSLFSSLNHEQKMAAEASPGILQIVAGPGTGKTKVLVSRVAHLLLRQRIP 131 Query: 62 PSTLLCLTHTKAAAAEMSHRV 82 P ++ T TK AAAE+ R+ Sbjct: 132 PQNIVVTTFTKKAAAELVERL 152 >gi|209965327|ref|YP_002298242.1| UvrD [Rhodospirillum centenum SW] gi|209958793|gb|ACI99429.1| UvrD [Rhodospirillum centenum SW] Length = 1178 Score = 38.9 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ LL+ A P +L +T T AA EM RV ++ Sbjct: 59 VLAGAGTGKTRVLTTRLAHLLVTRRAGPWNILTVTFTNKAAREMRERVEALV 110 >gi|218294885|ref|ZP_03495739.1| UvrD/REP helicase [Thermus aquaticus Y51MC23] gi|218244793|gb|EED11317.1| UvrD/REP helicase [Thermus aquaticus Y51MC23] Length = 868 Score = 38.9 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 27/147 (18%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A+AG+GKTH LV+ + L+ + + LT T+ AA E+ R + A L Sbjct: 6 ASAGTGKTHALVEELKGLIQSGVPLRRIAALTFTRKAAEELRGRAKRAVLA--------L 57 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF-CEAIMQQFPLEANITSH 156 SAE P + + H G TIH F EA+ PL ++ Sbjct: 58 SAE-------DPRLKEAEREVH----------GALFTTIHGFMAEALRHTAPL-LSLDPD 99 Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLD 183 FA+ D ++ L E +S L LD Sbjct: 100 FALLDTFLAEALFLEEARSLLYRKGLD 126 >gi|154507581|ref|ZP_02043223.1| hypothetical protein ACTODO_00061 [Actinomyces odontolyticus ATCC 17982] gi|153797215|gb|EDN79635.1| hypothetical protein ACTODO_00061 [Actinomyces odontolyticus ATCC 17982] Length = 674 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 15/94 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AG+GKT + R+ A PS +L +T T+ AA EM HR+ ++ Sbjct: 30 VLAGAGTGKTRAITYRIAYGAAVGAFDPSNVLAVTFTQRAAFEMRHRLAQL--------- 80 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 + K Q + + + + + RH T++ P Sbjct: 81 -----GVPKAQARTFHSAALRQLRHFWPTVVGGP 109 >gi|120436669|ref|YP_862355.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Gramella forsetii KT0803] gi|117578819|emb|CAL67288.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Gramella forsetii KT0803] Length = 787 Score = 38.9 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ +L LT T AA EM R+ +I+ Sbjct: 39 VIAGAGSGKTRVLTYRIAYLMNQGVDAFNILSLTFTNKAAREMKQRISKIV 89 >gi|86132275|ref|ZP_01050870.1| UvrD/REP helicase [Dokdonia donghaensis MED134] gi|85817194|gb|EAQ38377.1| UvrD/REP helicase [Dokdonia donghaensis MED134] Length = 778 Score = 38.9 bits (89), Expect = 0.64, Method: Composition-based stats. Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 32/165 (19%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII------TAW 89 V A AGSGKT +L R+ L+ +L LT T AA EM R+ I+ W Sbjct: 29 VIAGAGSGKTRVLTMRIAYLMSQGVDAFNILSLTFTNKAAREMKKRIAGIVGNNEAKNLW 88 Query: 90 SHLSDEILSAEITKIQGKK---PNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 I A+I +I+ K P+ TI +T Q AI+++ Sbjct: 89 MGTFHSIF-AKILRIEADKLGYPSN----------FTIYDT------QDSQRLISAIIKE 131 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 L+ +I + +Q + I K S + NN EL +A Sbjct: 132 MQLDKDIYKY------KQVQNRISSFKNSLITVRAYANNPELVEA 170 >gi|294614140|ref|ZP_06694061.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1636] gi|291592990|gb|EFF24578.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1636] Length = 745 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ L+ +P +L +T T AA EM RV I+ + Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILVS 81 >gi|258406520|ref|YP_003199262.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692] gi|257798747|gb|ACV69684.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692] Length = 1027 Score = 38.9 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 4/91 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A G+GKT L+ RV RLL +L LT T+A A E+ +R+ +A + + Sbjct: 483 VQAGPGTGKTRTLLARVRRLLEQGTPAKEILLLTFTRATAEELRNRLQLETSAAAEIQAG 542 Query: 96 ILS----AEITKIQGKKPNKSDMSKARHLLI 122 L A + G+ P AR L + Sbjct: 543 TLHSLAYAHFVQHHGRDPVLLSEEDARSLFV 573 >gi|162449161|ref|YP_001611528.1| ATP-depentend DNA helicase [Sorangium cellulosum 'So ce 56'] gi|161159743|emb|CAN91048.1| ATP-depentend DNA helicase [Sorangium cellulosum 'So ce 56'] Length = 820 Score = 38.9 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 38/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT ++V R+ L++ + P +L +T T AA EM R+ + Sbjct: 41 IFAGAGSGKTRVIVYRIANLIVTHRVPPYRILAVTFTNKAATEMKRRL-----------E 89 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++ +I K L V T HA C ++++ A + Sbjct: 90 GLIGPDIVK--------------------------DLWVGTFHAVCARLLRRHHEAAGLD 123 Query: 155 SHFAIADEEQSKKLIEEAKK 174 +F I D++ + ++ K Sbjct: 124 KNFIIYDDDDQRAVMNRVLK 143 >gi|94967078|ref|YP_589126.1| ATP-dependent DNA helicase Rep [Candidatus Koribacter versatilis Ellin345] gi|94549128|gb|ABF39052.1| ATP-dependent DNA helicase, Rep family [Candidatus Koribacter versatilis Ellin345] Length = 849 Score = 38.9 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT ++ R+ L+ P ++L +T T AAAEM RV ++ Sbjct: 24 ILAGAGSGKTRVITYRIAYLIEKVGVSPDSILAMTFTNKAAAEMQERVEHLV 75 >gi|126434059|ref|YP_001069750.1| UvrD/REP helicase [Mycobacterium sp. JLS] gi|126233859|gb|ABN97259.1| UvrD/REP helicase [Mycobacterium sp. JLS] Length = 1091 Score = 38.9 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Query: 1 MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59 M S E + + L + T + + + P V A AG+GKT + RV+ L+AN Sbjct: 1 MTARYSPAELASALGLFAPTDEQAAVIAAPPGPVVVIAGAGAGKTETMAARVV-WLVANG 59 Query: 60 -AHPSTLLCLTHTKAAAAEMSHRV 82 A P +L LT T+ AA ++ RV Sbjct: 60 YATPGQVLGLTFTRKAAGQLLRRV 83 >gi|239908585|ref|YP_002955327.1| UvrD/REP helicase family protein [Desulfovibrio magneticus RS-1] gi|239798452|dbj|BAH77441.1| UvrD/REP helicase family protein [Desulfovibrio magneticus RS-1] Length = 1055 Score = 38.9 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T ++ A R A G+GKTH L+ R+ LL +L +T T+ AAA++ Sbjct: 476 TPDQKRAAETAARHVLTVAGPGTGKTHTLLARIRELLSHGVAADKILAVTFTRRAAAQLR 535 Query: 80 HRV 82 R+ Sbjct: 536 ERL 538 >gi|144899243|emb|CAM76107.1| UvrD/REP helicase [Magnetospirillum gryphiswaldense MSR-1] Length = 745 Score = 38.9 bits (89), Expect = 0.65, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V + AG+GKT +L R+ ++L A P +L +T T AA EM +RV ++ Sbjct: 54 VLSGAGTGKTRVLTSRLAQILAGRRAQPWQILAVTFTNKAAREMKNRVAHMV 105 >gi|56708170|ref|YP_170066.1| ATP-dependent DNA helicase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670641|ref|YP_667198.1| ATP-dependent DNA helicase [Francisella tularensis subsp. tularensis FSC198] gi|254370654|ref|ZP_04986659.1| ATP-dependent DNA helicase [Francisella tularensis subsp. tularensis FSC033] gi|56604662|emb|CAG45720.1| ATP-dependent DNA helicase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320974|emb|CAL09103.1| ATP-dependent DNA helicase [Francisella tularensis subsp. tularensis FSC198] gi|151568897|gb|EDN34551.1| ATP-dependent DNA helicase [Francisella tularensis subsp. tularensis FSC033] gi|282159383|gb|ADA78774.1| ATP-dependent DNA helicase [Francisella tularensis subsp. tularensis NE061598] Length = 671 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++++++ L+ +P+ ++L +T T AA EM RV Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV 69 >gi|315656388|ref|ZP_07909277.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492947|gb|EFU82549.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 1191 Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78 T+ + + + P V A AGSGKT + R++ ++ A P +L LT T+ AAAEM Sbjct: 26 TREQSAVITAPRGQLLVVAGAGSGKTETIANRLVYWVVNAGIVPEAILGLTFTRKAAAEM 85 Query: 79 SHR 81 + R Sbjct: 86 AAR 88 >gi|261350758|ref|ZP_05976175.1| DNA helicase II [Methanobrevibacter smithii DSM 2374] gi|288860513|gb|EFC92811.1| DNA helicase II [Methanobrevibacter smithii DSM 2374] Length = 994 Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A GSGKT ++++RV L+ +PS+LL +T T+ AA E+ R+ E I Sbjct: 20 VEAGPGSGKTRVIIERVKFLINELKVNPSSLLVITFTRKAANELKDRLSEDI 71 >gi|187930550|ref|YP_001901037.1| UvrD/REP helicase [Ralstonia pickettii 12J] gi|187727440|gb|ACD28605.1| UvrD/REP helicase [Ralstonia pickettii 12J] Length = 706 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++ Q++ L+L P + +T T AA EM RV +++ Sbjct: 26 VLAGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDG 79 >gi|78183791|ref|YP_376225.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9902] gi|78168085|gb|ABB25182.1| ATP-dependent DNA helicase, Rep family [Synechococcus sp. CC9902] Length = 798 Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 22/146 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+ + A P +L +T T AA EM R LE+ Sbjct: 24 VVAGAGSGKTRALTHRIAHLIGEHGADPGQILAVTFTNKAAREMKER-LEL--------- 73 Query: 95 EILSAEITKIQGKKP-NKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQQFPLEA- 151 +L+ + + Q +P + + R L I E L + T HA A M +F ++ Sbjct: 74 -LLAQRLAQSQFGQPWSTLPPVQQRQLRSRIYREITKELWIGTFHALF-ARMLRFDIDKF 131 Query: 152 ------NITSHFAIADEEQSKKLIEE 171 T F+I DE ++ L++E Sbjct: 132 RDPDGLTWTKQFSIYDEADAQSLVKE 157 >gi|332184092|gb|AEE26346.1| ATP-dependent DNA helicase Rep [Francisella cf. novicida 3523] Length = 671 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++++++ L+ +P+ ++L +T T AA EM RV Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV 69 >gi|262370059|ref|ZP_06063386.1| exonuclease subunit V [Acinetobacter johnsonii SH046] gi|262315098|gb|EEY96138.1| exonuclease subunit V [Acinetobacter johnsonii SH046] Length = 1250 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 44/190 (23%), Positives = 87/190 (45%), Gaps = 27/190 (14%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV-------LEIIT 87 W+ A+AG+GKT L ++R+ L P+ ++ T T+AAAAE+ RV L Sbjct: 27 WIEASAGTGKTFTLSSLMVRIFLGAYLPNQVIATTFTRAAAAELKSRVRARLIETLRYFE 86 Query: 88 AWSHLSDEILSAEI--------TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 L++ + A+I TK+ + ++ R L +++ L V T+ +F Sbjct: 87 GCQSLTEREIQAKIAAEQDPLFTKVLTDYAQRVGFAQER--LKLVIDQLDELFVGTLDSF 144 Query: 140 CEAIMQQFPLEANITSHFAIADEEQS----------KKLIEEAKKSTLASIMLDNNEELK 189 + ++++F E+ I D+ QS ++ I+ + + ++L + + Sbjct: 145 SQKLLREFSFESGKIERADITDDAQSYTQQLIHDVLREWIQAQPQPVVNYLLLKQKLKTE 204 Query: 190 KAFYEILEIS 199 +A+ I+E S Sbjct: 205 QAYVPIVENS 214 >gi|218289369|ref|ZP_03493603.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius LAA1] gi|218240475|gb|EED07656.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius LAA1] Length = 757 Score = 38.9 bits (89), Expect = 0.66, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 S+ + +++ + E + A+D V A AGSGKT +L +R++ L+ P +L +T Sbjct: 8 SDILKGLNEKQREAVTATDG--PVLVIAGAGSGKTSVLTRRIVYLIAERRVPPWAILAIT 65 Query: 70 HTKAAAAEMSHRVLEII 86 T AA EM R+ ++ Sbjct: 66 FTNKAAREMEERIERLV 82 >gi|208779175|ref|ZP_03246521.1| UvrD/REP helicase family protein [Francisella novicida FTG] gi|208744975|gb|EDZ91273.1| UvrD/REP helicase family protein [Francisella novicida FTG] Length = 671 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++++++ L+ +P+ ++L +T T AA EM RV Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERV 69 >gi|218848008|ref|YP_002454758.1| helicase, UvrD/Rep family [Bacillus cereus G9842] gi|218546139|gb|ACK98532.1| helicase, UvrD/Rep family [Bacillus cereus G9842] Length = 666 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L +V ++ P+ ++ LT TK AA EM R+ Sbjct: 80 AGAGSGKTSVLTSKVGYMMNYKEIKPANIMILTFTKKAAEEMKSRI 125 >gi|283852071|ref|ZP_06369345.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B] gi|283572461|gb|EFC20447.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B] Length = 1062 Score = 38.9 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 28/145 (19%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLC---------------LTHTKAAAAEMSH 80 V A+AGSGKTH L +R + L L +C +T T AAAEM Sbjct: 5 VKASAGSGKTHALTERFIALALGTKGNLPRICADSLEAGYALPEIMAVTFTNKAAAEMRE 64 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 RV + + + G P + +KAR L +L L ++TI + Sbjct: 65 RVFHRLKTMA-----------LGLGGTDP--ASRAKARDELEELLIHAERLNIRTIDSLL 111 Query: 141 EAIMQQFPLEANITSHFAIADEEQS 165 + + F LE + F A ++ + Sbjct: 112 FLLARAFALELGLRPDFEPAFDDSA 136 >gi|269123275|ref|YP_003305852.1| UvrD/REP helicase [Streptobacillus moniliformis DSM 12112] gi|268314601|gb|ACZ00975.1| UvrD/REP helicase [Streptobacillus moniliformis DSM 12112] Length = 981 Score = 38.9 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 2/110 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE--IITAWSHLS 93 V A+AG+GKT+ L + LL +L +T TK A AE+ +R+ E +I + Sbjct: 8 VKASAGTGKTYRLSLEYIYFLLLGIDFRNILVMTFTKKATAEIKNRIFEFILIIISKEGN 67 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 E L I G K D+ K + +L +++ TI F + Sbjct: 68 YEELMKNIENNFGYKFKDGDIEKLTDIYKDMLINKNSVRIDTIDGFTSKV 117 >gi|153814085|ref|ZP_01966753.1| hypothetical protein RUMTOR_00293 [Ruminococcus torques ATCC 27756] gi|317499894|ref|ZP_07958130.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 8_1_57FAA] gi|331087883|ref|ZP_08336808.1| hypothetical protein HMPREF1025_00391 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848481|gb|EDK25399.1| hypothetical protein RUMTOR_00293 [Ruminococcus torques ATCC 27756] gi|316898611|gb|EFV20646.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 8_1_57FAA] gi|330409578|gb|EGG89019.1| hypothetical protein HMPREF1025_00391 [Lachnospiraceae bacterium 3_1_46FAA] Length = 750 Score = 38.9 bits (89), Expect = 0.67, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 39/142 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ L+ +P +L +T T AA EM RV ++ Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAEEMRQRVDSLVG------- 76 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + AE + V T H+ C I++++ Sbjct: 77 --IGAE-----------------------------SIWVSTFHSMCVRILRRYIDRLGYD 105 Query: 155 SHFAIADEEQSKKLIEEAKKST 176 + F I D + K L++E + T Sbjct: 106 NRFTIYDTDDQKTLMKEVCRKT 127 >gi|69246832|ref|ZP_00604141.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium DO] gi|68195065|gb|EAN09527.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium DO] Length = 744 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ L+ +P +L +T T AA EM RV I+ + Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 81 >gi|297194169|ref|ZP_06911567.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] gi|297152140|gb|EDY65903.2| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] Length = 639 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 7/53 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP------STLLCLTHTKAAAAEMSHRV 82 V+A AG+GKTH LV+R L L + P + +L LT+++AAA E+ R+ Sbjct: 33 VTAGAGAGKTHTLVRR-LDALCGHEDPEEALEAAEILVLTYSRAAARELRERI 84 >gi|152991980|ref|YP_001357701.1| ATP-dependent DNA helicase UvrD [Sulfurovum sp. NBC37-1] gi|151423841|dbj|BAF71344.1| ATP-dependent DNA helicase, UvrD/REP family [Sulfurovum sp. NBC37-1] Length = 688 Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT L R+ L+ P+ L LT T AAAEM R L+++ Sbjct: 27 AGAGSGKTKTLTARLAYLVGEVGIDPANTLTLTFTNKAAAEMRERALKLM 76 >gi|332092491|gb|EGI97564.1| helicase IV [Shigella boydii 5216-82] Length = 684 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPDQILLLAFGRKAAEEMDERIRE 263 >gi|304385365|ref|ZP_07367710.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici DSM 20284] gi|304328572|gb|EFL95793.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici DSM 20284] Length = 760 Score = 38.9 bits (89), Expect = 0.68, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 56/149 (37%), Gaps = 43/149 (28%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L RV L+ + +P +L +T T AA EM RV ++ Sbjct: 30 IMAGAGSGKTRVLTHRVAYLIEEKDVNPWNILAITFTNKAAREMRERVANLLG------- 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E + V T HA C I+++ + Sbjct: 83 -------------------------------EVASEIWVSTFHALCVRILRRDIEQIGYN 111 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLD 183 F+IAD + + LI K LA + D Sbjct: 112 RAFSIADPSEQRTLI----KHVLADLNYD 136 >gi|293560000|ref|ZP_06676508.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1162] gi|291606088|gb|EFF35514.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1162] Length = 744 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ L+ +P +L +T T AA EM RV I+ + Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 81 >gi|123447558|ref|XP_001312517.1| hypothetical protein [Trichomonas vaginalis G3] gi|121894367|gb|EAX99587.1| hypothetical protein TVAG_427510 [Trichomonas vaginalis G3] Length = 1679 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 1/56 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 ++ +VS AGSGKT++ V+ V +L++ S +L +T K AA E+S +L+II Sbjct: 460 SKLTFVSGCAGSGKTYLAVKSVFLYVLSHRD-SPILIVTQKKHAADEISKSLLKII 514 >gi|17548006|ref|NP_521408.1| ATP-dependent DNA helicase REP protein [Ralstonia solanacearum GMI1000] gi|17430312|emb|CAD17077.1| probable atp-dependent dna helicase rep protein [Ralstonia solanacearum GMI1000] Length = 705 Score = 38.9 bits (89), Expect = 0.68, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++ Q++ L+L P + +T T AA EM RV +++ Sbjct: 26 VLAGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDG 79 >gi|293377660|ref|ZP_06623849.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium PC4.1] gi|292643660|gb|EFF61781.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium PC4.1] Length = 744 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ L+ +P +L +T T AA EM RV I+ + Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 81 >gi|197334387|ref|YP_002155339.1| exodeoxyribonuclease V, beta subunit [Vibrio fischeri MJ11] gi|197315877|gb|ACH65324.1| exodeoxyribonuclease V, beta subunit [Vibrio fischeri MJ11] Length = 1208 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 29/139 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT + LRLLL + T +L +T T+AA AE+ R+ Sbjct: 23 IEASAGTGKTFTIASLYLRLLLGHGDEGTRHQEELTVDRILVVTFTEAATAELRERIRAK 82 Query: 86 I----TAWSHL--------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 I A++ SD ++ + I D A +L+ + + Sbjct: 83 IHDARLAFARAVHNNDYKSSDPVIDPLLASI-------GDHKSATQILLNAERSMDEASI 135 Query: 134 QTIHAFCEAIMQQFPLEAN 152 TIH FC+ ++ Q E+ Sbjct: 136 FTIHGFCQRMLTQNAFESG 154 >gi|85374356|ref|YP_458418.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594] gi|84787439|gb|ABC63621.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594] Length = 776 Score = 38.9 bits (89), Expect = 0.69, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R+ L+ A PS +LC+T T AA EM RV Sbjct: 50 AGAGTGKTAALTARLAHLIATRKAWPSEILCVTFTNKAAREMRSRV 95 >gi|38233329|ref|NP_939096.1| putative helicase [Corynebacterium diphtheriae NCTC 13129] gi|38199589|emb|CAE49245.1| Putative helicase [Corynebacterium diphtheriae] Length = 1076 Score = 38.9 bits (89), Expect = 0.69, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 5/98 (5%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 T + + S P V A AG+GKT + RV+ L+ + P +L LT T+ AA ++ Sbjct: 18 TPQQADVISSPLAPTLVVAGAGAGKTETMAARVVWLVASGLVDPDRVLGLTFTRKAAQQL 77 Query: 79 SHRV---LEIITAWSHLSD-EILSAEITKIQGKKPNKS 112 S R+ LE + +L D + A TK++ P S Sbjct: 78 SKRIRDRLEQLAGIDNLRDLDPTGALATKLEAIAPTVS 115 >gi|323143387|ref|ZP_08078073.1| topoisomerase DNA-binding C4 zinc finger domain protein [Succinatimonas hippei YIT 12066] gi|322416835|gb|EFY07483.1| topoisomerase DNA-binding C4 zinc finger domain protein [Succinatimonas hippei YIT 12066] Length = 999 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLE 84 A AG+GKT ++V + L L+++ A P +L L + K AA E+ R+ E Sbjct: 211 AAAGTGKTSVIVAKALYLVVSKQAQPKDILILAYNKNAAEELRQRIKE 258 >gi|315606173|ref|ZP_07881201.1| excision endonuclease subunit UvrD [Actinomyces sp. oral taxon 180 str. F0310] gi|315312131|gb|EFU60220.1| excision endonuclease subunit UvrD [Actinomyces sp. oral taxon 180 str. F0310] Length = 670 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 15/94 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AG+GKT + R+ A PS +L +T T+ AA EM HR+ ++ Sbjct: 27 VLAGAGTGKTRAITYRIAYGAAVGAVDPSNVLAVTFTQRAAFEMRHRLAQL--------- 77 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 + K Q + + + + + RH T++ P Sbjct: 78 -----GVPKAQARTFHSAALRQLRHFWPTVVGGP 106 >gi|294618098|ref|ZP_06697695.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1679] gi|291595670|gb|EFF26966.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1679] Length = 744 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ L+ +P +L +T T AA EM RV I+ + Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 81 >gi|207722204|ref|YP_002252641.1| atp-dependent dna helicase rep protein [Ralstonia solanacearum MolK2] gi|206587379|emb|CAQ17962.1| atp-dependent dna helicase rep protein [Ralstonia solanacearum MolK2] Length = 705 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++ Q++ L+L P + +T T AA EM RV +++ Sbjct: 26 VLAGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDG 79 >gi|163732146|ref|ZP_02139592.1| UvrD/REP helicase [Roseobacter litoralis Och 149] gi|161394444|gb|EDQ18767.1| UvrD/REP helicase [Roseobacter litoralis Och 149] Length = 868 Score = 38.9 bits (89), Expect = 0.69, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ LL A P+ +L +T T AA EM +RV Sbjct: 50 AGAGTGKTRALTARIVHLLNTGRARPNEVLAVTFTNKAAREMKNRV 95 >gi|148285059|ref|YP_001249149.1| DNA helicase II, CAI27690 [Orientia tsutsugamushi str. Boryong] gi|146740498|emb|CAM81056.1| DNA helicase II, CAI27690 [Orientia tsutsugamushi str. Boryong] Length = 716 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AG+GKT ++ R+ ++ A P +L +T T AA EM RV EI + + Sbjct: 25 VLAGAGTGKTRVITYRIAYIIDQFMASPEEILAVTFTNKAATEMQSRVAEITNNTTGIYI 84 Query: 95 EILSAEITKI 104 A TKI Sbjct: 85 GTFHAIATKI 94 >gi|145629400|ref|ZP_01785198.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 22.1-21] gi|144978243|gb|EDJ88007.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 22.1-21] Length = 662 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 32/146 (21%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT+ + LRLLL + +L +T T+ A E+ ++ E IT Sbjct: 20 IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79 Query: 88 -AWSHLS-------------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 A L+ DE L+A + D+ +A H L + + Sbjct: 80 DAIDKLTAFAKTQDKSAFKNDEFLTALCDNL--------DIFEAIHRLKLAEQNMDLAAI 131 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAI 159 TIH FC ++ Q+ + I HF + Sbjct: 132 YTIHGFCRRMLMQYAFHSGI--HFNL 155 >gi|315452533|ref|YP_004072803.1| ATP-dependent DNA helicase [Helicobacter felis ATCC 49179] gi|315131585|emb|CBY82213.1| putative ATP-dependent DNA helicase [Helicobacter felis ATCC 49179] Length = 658 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 19 QTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q SEQ+ A+ + A+AG+GKT +V R++ LL P +L LT T A+ E Sbjct: 2 QLNSEQIQATQARLGRNLIIASAGTGKTSTIVGRIIHLLKQGISPHEILLLTFTNKASLE 61 Query: 78 MSHRV 82 M R+ Sbjct: 62 MKERL 66 >gi|293569138|ref|ZP_06680445.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1071] gi|291588185|gb|EFF20026.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1071] Length = 744 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ L+ +P +L +T T AA EM RV I+ + Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 81 >gi|289565872|ref|ZP_06446313.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium D344SRF] gi|289162332|gb|EFD10191.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium D344SRF] Length = 744 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ L+ +P +L +T T AA EM RV I+ + Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 81 >gi|260576875|ref|ZP_05844858.1| UvrD/REP helicase [Rhodobacter sp. SW2] gi|259020912|gb|EEW24225.1| UvrD/REP helicase [Rhodobacter sp. SW2] Length = 850 Score = 38.9 bits (89), Expect = 0.70, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ LL A P+ +L +T T AA EM RV Sbjct: 51 AGAGTGKTKALTARIVHLLTTGKARPNEILAVTFTNKAAREMKDRV 96 >gi|154502276|ref|ZP_02039336.1| hypothetical protein RUMGNA_00086 [Ruminococcus gnavus ATCC 29149] gi|153797155|gb|EDN79575.1| hypothetical protein RUMGNA_00086 [Ruminococcus gnavus ATCC 29149] Length = 625 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT +L R+ +++ N PS++L +T +K A ++ +++E+ Sbjct: 20 VIATAGSGKTTVLTHRIKKMVEEHNILPSSILAITFSKKAKENINEKLMEL 70 >gi|146328|gb|AAA23952.1| helicase IV [Escherichia coli] Length = 684 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|83954004|ref|ZP_00962725.1| DNA helicase II, putative [Sulfitobacter sp. NAS-14.1] gi|83841949|gb|EAP81118.1| DNA helicase II, putative [Sulfitobacter sp. NAS-14.1] Length = 806 Score = 38.9 bits (89), Expect = 0.70, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ L+ A P+ +L +T T AA EM +RV Sbjct: 50 AGAGTGKTKALTARIVHLMNTGRARPNEILAVTFTNKAAREMKNRV 95 >gi|127512196|ref|YP_001093393.1| UvrD/REP helicase [Shewanella loihica PV-4] gi|126637491|gb|ABO23134.1| UvrD/REP helicase [Shewanella loihica PV-4] Length = 678 Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 28/49 (57%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A + A GSGKT LV+RV RL+ P ++L L + K+A S ++ Sbjct: 20 ALIKAVPGSGKTTTLVKRVERLIKTGVEPGSILILMYNKSATVSFSDKL 68 >gi|323491803|ref|ZP_08096978.1| DNA helicase IV [Vibrio brasiliensis LMG 20546] gi|323313938|gb|EGA67027.1| DNA helicase IV [Vibrio brasiliensis LMG 20546] Length = 688 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 12/69 (17%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT +L RV LL ++ A P +L L + AA EM R L+D++ Sbjct: 219 AGAGSGKTSVLTARVAYLLQSHIARPEEILMLAFGRDAADEMKQR----------LNDKV 268 Query: 97 -LSAEITKI 104 LSAE K+ Sbjct: 269 GLSAESVKV 277 >gi|310644241|ref|YP_003949000.1| ATP-dependent DNA helicase pcra [Paenibacillus polymyxa SC2] gi|309249192|gb|ADO58759.1| ATP-dependent DNA helicase PcrA [Paenibacillus polymyxa SC2] Length = 774 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ P +L +T T AA EM RV ++I Sbjct: 30 IMAGAGSGKTRVLTHRIAYLIATRKTAPWGILAITFTNKAAREMQDRVSKLI 81 >gi|54024515|ref|YP_118757.1| putative RecB protein [Nocardia farcinica IFM 10152] gi|54016023|dbj|BAD57393.1| putative RecB protein [Nocardia farcinica IFM 10152] Length = 1113 Score = 38.5 bits (88), Expect = 0.70, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 11/128 (8%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + + A+AG+GKTH +V +R + A + LL +T ++AA E+ R + A Sbjct: 24 PRGTTVLEASAGTGKTHAIVGLAVRYVAEAGVRIAELLLVTFSRAATQELRERARDRFVA 83 Query: 89 WSHLSDEILSAEITKIQGKK-------PNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 ++ + + + G + + ++++ R L+T L + T H+FC+ Sbjct: 84 ---VAAALADPDSARAAGDELIAHLAAADDTEVALRRTRLLTALSDFDAGTIATTHSFCQ 140 Query: 142 AIMQQFPL 149 ++ + L Sbjct: 141 RMLDELGL 148 >gi|300702548|ref|YP_003744148.1| ATP-dependent DNA helicase [Ralstonia solanacearum CFBP2957] gi|299070209|emb|CBJ41500.1| ATP-dependent DNA helicase [Ralstonia solanacearum CFBP2957] Length = 705 Score = 38.5 bits (88), Expect = 0.71, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++ Q++ L+L P + +T T AA EM RV +++ Sbjct: 26 VLAGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDG 79 >gi|293571853|ref|ZP_06682869.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E980] gi|291608107|gb|EFF37413.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E980] Length = 744 Score = 38.5 bits (88), Expect = 0.71, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ L+ +P +L +T T AA EM RV I+ + Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 81 >gi|257126540|ref|YP_003164654.1| UvrD/REP helicase [Leptotrichia buccalis C-1013-b] gi|257050479|gb|ACV39663.1| UvrD/REP helicase [Leptotrichia buccalis C-1013-b] Length = 1049 Score = 38.5 bits (88), Expect = 0.71, Method: Compositional matrix adjust. Identities = 24/119 (20%), Positives = 56/119 (47%), Gaps = 4/119 (3%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII--T 87 T + + A+AG+GKT+ L + L+ + ++ +T TK A AE+ R+ + + Sbjct: 2 KTNNIILKASAGTGKTYRLSLEFIANLIRGVNYKNIVVMTFTKKATAEIKERIYDFLHQI 61 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 A+ + L + +I K + + + +++ +++ +++ TI F I + Sbjct: 62 AFDEGNGTELEKNLKEIY--KFDNLNKKELQNIYFEMIKNKEDIRISTIDGFTNQIFKN 118 >gi|197105764|ref|YP_002131141.1| DNA helicase II [Phenylobacterium zucineum HLK1] gi|196479184|gb|ACG78712.1| DNA helicase II [Phenylobacterium zucineum HLK1] Length = 774 Score = 38.5 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A P LL +T T AA EM R+ +I Sbjct: 47 VLAGAGTGKTRVLTTRLAHILATGKARPWELLAVTFTNKAAREMRERISHMI 98 >gi|32266430|ref|NP_860462.1| ATP-dependent DNA helicase [Helicobacter hepaticus ATCC 51449] gi|32262480|gb|AAP77528.1| ATP-dependent DNA helicase [Helicobacter hepaticus ATCC 51449] Length = 676 Score = 38.5 bits (88), Expect = 0.71, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +SQ ++Q A+ + + A+AG+GKT +V R+ LL P +L LT T A+ Sbjct: 3 LSQLNAQQAEAATASSGHNLIIASAGTGKTATIVGRIAYLLNQGYAPQDILLLTFTNKAS 62 Query: 76 AEMSHRVLEII 86 +EM R+ +I Sbjct: 63 SEMLARIGKIF 73 >gi|83747407|ref|ZP_00944446.1| ATP-dependent DNA helicase rep [Ralstonia solanacearum UW551] gi|207744777|ref|YP_002261169.1| atp-dependent dna helicase rep protein [Ralstonia solanacearum IPO1609] gi|83725864|gb|EAP73003.1| ATP-dependent DNA helicase rep [Ralstonia solanacearum UW551] gi|206596187|emb|CAQ63114.1| atp-dependent dna helicase rep protein [Ralstonia solanacearum IPO1609] Length = 705 Score = 38.5 bits (88), Expect = 0.71, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++ Q++ L+L P + +T T AA EM RV +++ Sbjct: 26 VLAGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDG 79 >gi|257458469|ref|ZP_05623609.1| ATP-dependent DNA helicase PcrA [Treponema vincentii ATCC 35580] gi|257444170|gb|EEV19273.1| ATP-dependent DNA helicase PcrA [Treponema vincentii ATCC 35580] Length = 809 Score = 38.5 bits (88), Expect = 0.71, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 41/163 (25%) Query: 12 ETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLT 69 ET +S EQL A T S + A AGSGKT ++ ++ L+ P ++L +T Sbjct: 3 ETCKYLSVLNPEQLEAVCHTGSPLLILAGAGSGKTRVITTKIAWLIAEQGVRPESILAVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM+ R + D AR + Sbjct: 63 FTNKAAREMAERARVL---------------------------DERTARSV--------- 86 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 ++T H+F +++++ A ++ +F I D+E S L+ +A Sbjct: 87 ---IRTFHSFGAWMLRRYAEWAGLSPNFTIYDDEDSVTLLMKA 126 >gi|228937586|ref|ZP_04100224.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970473|ref|ZP_04131124.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977042|ref|ZP_04137445.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis Bt407] gi|228782659|gb|EEM30834.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis Bt407] gi|228789205|gb|EEM37133.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822067|gb|EEM68057.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938079|gb|AEA13975.1| DNA helicase II [Bacillus thuringiensis serovar chinensis CT-43] Length = 753 Score = 38.5 bits (88), Expect = 0.71, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ LL P +L +T T AA EM R+ +++ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLV 83 >gi|260582454|ref|ZP_05850245.1| exodeoxyribonuclease V, beta subunit [Haemophilus influenzae NT127] gi|260094434|gb|EEW78331.1| exodeoxyribonuclease V, beta subunit [Haemophilus influenzae NT127] Length = 1211 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 26/143 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT+ + LRLLL + +L +T T+ A E+ ++ E IT Sbjct: 20 IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79 Query: 88 AWSHLSDEILSAEITKIQGKKPNKS-----------DMSKARHLLITILETPGGLKVQTI 136 + + L+A K Q K K+ D+ +A H L + + TI Sbjct: 80 D----AIDKLTA-FAKTQDKSAFKNDEFLTALCHDLDIFEAIHRLKLAEQNMDLAAIYTI 134 Query: 137 HAFCEAIMQQFPLEANITSHFAI 159 H FC ++ Q+ + I HF + Sbjct: 135 HGFCRRMLMQYAFHSGI--HFNL 155 >gi|227551669|ref|ZP_03981718.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX1330] gi|257895731|ref|ZP_05675384.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com12] gi|227179232|gb|EEI60204.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX1330] gi|257832296|gb|EEV58717.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com12] Length = 747 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ L+ +P +L +T T AA EM RV I+ + Sbjct: 33 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 84 >gi|225023329|ref|ZP_03712521.1| hypothetical protein EIKCOROL_00187 [Eikenella corrodens ATCC 23834] gi|224943974|gb|EEG25183.1| hypothetical protein EIKCOROL_00187 [Eikenella corrodens ATCC 23834] Length = 1241 Score = 38.5 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 12/126 (9%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHR------- 81 P + V A+AG+GKT+ + RL +L P +L +T T+AA AE+ +R Sbjct: 13 PQGTHLVEASAGTGKTYSIAALFTRLVVLEGWAPENILVVTFTEAATAELKNRLRARLGE 72 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 VL + + +DE L + + K+ + SK L L + TIH FC Sbjct: 73 VLAALQSGETPADEFLQHLLAEALAKQ----ERSKLILQLQAALSGFDTAAIYTIHGFCL 128 Query: 142 AIMQQF 147 ++ + Sbjct: 129 RVLGDY 134 >gi|239825841|ref|YP_002948465.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. WCH70] gi|239806134|gb|ACS23199.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. WCH70] Length = 732 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT +L R+ L+ P +L +T T AA EM RV Sbjct: 29 IMAGAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFTNKAAREMKERV 76 >gi|123441896|ref|YP_001005879.1| DNA helicase IV [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088857|emb|CAL11663.1| putative helicase IV [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 684 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%) Query: 4 HNSFQEHS---ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59 H +EH ++++ +S+ + S V A AGSGKT +LV R LL N Sbjct: 179 HRMLEEHQDFFQSVETSPLNESQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNE 238 Query: 60 AHPSTLLCLTHTKAAAAEMSHRV 82 A P +L L + AA EM+ R+ Sbjct: 239 ALPEQILLLAFGRQAADEMNSRI 261 >gi|92115386|ref|YP_575314.1| ATP-dependent DNA helicase UvrD [Chromohalobacter salexigens DSM 3043] gi|91798476|gb|ABE60615.1| ATP-dependent DNA helicase UvrD [Chromohalobacter salexigens DSM 3043] Length = 739 Score = 38.5 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L S +++ S P + V A AGSGKT +LV R+ L+ + P +L +T T A Sbjct: 13 LDSLNTAQREAVSHPQGNLLVLAGAGSGKTRVLVHRIAWLMQVEGLSPYAILAVTFTNKA 72 Query: 75 AAEMSHRV 82 A EM R+ Sbjct: 73 AREMRTRL 80 >gi|148263902|ref|YP_001230608.1| UvrD/REP helicase [Geobacter uraniireducens Rf4] gi|146397402|gb|ABQ26035.1| UvrD/REP helicase [Geobacter uraniireducens Rf4] Length = 620 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 28/50 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A GSGKT +L +R+ RLL +L LT T AA EM R+ ++ Sbjct: 23 VIAGPGSGKTRVLTERIRRLLTVIPGHFRVLALTFTNKAANEMKERLSDL 72 >gi|304321353|ref|YP_003854996.1| DNA helicase II [Parvularcula bermudensis HTCC2503] gi|303300255|gb|ADM09854.1| DNA helicase II [Parvularcula bermudensis HTCC2503] Length = 775 Score = 38.5 bits (88), Expect = 0.72, Method: Composition-based stats. Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R+ LL++ A+P LL +T T AA EM RV Sbjct: 45 AGAGTGKTRALTTRLAHLLISGRANPWDLLAVTFTNKAAREMRERV 90 >gi|329914689|ref|ZP_08276145.1| ATP-dependent DNA helicase Rep [Oxalobacteraceae bacterium IMCC9480] gi|327545085|gb|EGF30383.1| ATP-dependent DNA helicase Rep [Oxalobacteraceae bacterium IMCC9480] Length = 692 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 37/137 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ + P + LT T AA EM R+ +++ Sbjct: 36 VLAGAGSGKTRVITQKIAHLIEDRGYEPKHIAALTFTNKAALEMQERIAKLL-------- 87 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 K+P ++ L V T H+ I++Q + + Sbjct: 88 ------------KQPRQAKQ----------------LTVSTFHSLGVKILRQEARQLGLK 119 Query: 155 SHFAIADEEQSKKLIEE 171 F+I D + L+++ Sbjct: 120 DRFSIMDSDDCFSLVQD 136 >gi|315037777|ref|YP_004031345.1| ATP-dependent helicase [Lactobacillus amylovorus GRL 1112] gi|312275910|gb|ADQ58550.1| ATP-dependent helicase [Lactobacillus amylovorus GRL 1112] Length = 748 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 V A AGSGKT +L +R+ L+ N P +L +T T AA EM R Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAATEMRER 73 >gi|312139063|ref|YP_004006399.1| exodeoxyribonuclease v beta subunit recb [Rhodococcus equi 103S] gi|311888402|emb|CBH47714.1| exodeoxyribonuclease V beta subunit RecB [Rhodococcus equi 103S] Length = 1103 Score = 38.5 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 15/164 (9%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVL 83 L A P + + A+AG+GKT+ +V R + + S LL +T ++AA E+ R Sbjct: 14 LFAPLPQGTTVLEASAGTGKTYAIVGLAARFVAEEDVDLSQLLLVTFSRAATKELRERTR 73 Query: 84 E-IITAWSHLSDEI---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 E +A + L+D I S + + ++++ R L+ L + T H+F Sbjct: 74 ERFASAAAGLADPIAARASEDPLVAHLADTDDAEIALRRRRLMQALSDFDAGTIVTTHSF 133 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 C+ ++ IA E ++ E + +A ++ D Sbjct: 134 CQRMLDG----------LGIAGERDPDAVLVEEAEDLVAEVIAD 167 >gi|307719793|ref|YP_003875325.1| DNA helicase [Spirochaeta thermophila DSM 6192] gi|306533518|gb|ADN03052.1| DNA helicase [Spirochaeta thermophila DSM 6192] Length = 683 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 40/133 (30%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT ++ ++ L+ A P+ ++L +T T AA EM R L++ Sbjct: 29 AGAGSGKTRVITTKIAYLVDALGIPARSILAVTFTNKAAREMYERALQL----------- 77 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 P G+ ++T H+F +++ + + Sbjct: 78 -----------SPRTE-----------------GVMIKTFHSFGAWLLRLYGERLGLARD 109 Query: 157 FAIADEEQSKKLI 169 FAI D+E ++ L+ Sbjct: 110 FAIYDDEDARALL 122 >gi|257884411|ref|ZP_05664064.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,501] gi|257887195|ref|ZP_05666848.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,141,733] gi|257820249|gb|EEV47397.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,501] gi|257823249|gb|EEV50181.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,141,733] Length = 747 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ L+ +P +L +T T AA EM RV I+ + Sbjct: 33 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 84 >gi|257878463|ref|ZP_05658116.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,230,933] gi|257882882|ref|ZP_05662535.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,502] gi|257889340|ref|ZP_05668993.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,410] gi|257894352|ref|ZP_05674005.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,408] gi|260560050|ref|ZP_05832228.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium C68] gi|314937828|ref|ZP_07845145.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a04] gi|314941626|ref|ZP_07848506.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133C] gi|314948873|ref|ZP_07852242.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0082] gi|314951009|ref|ZP_07854076.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133A] gi|314993010|ref|ZP_07858406.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133B] gi|314996457|ref|ZP_07861500.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a01] gi|257812691|gb|EEV41449.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,230,933] gi|257818540|gb|EEV45868.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,502] gi|257825700|gb|EEV52326.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,410] gi|257830731|gb|EEV57338.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,408] gi|260073885|gb|EEW62209.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium C68] gi|313589439|gb|EFR68284.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a01] gi|313592533|gb|EFR71378.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133B] gi|313596864|gb|EFR75709.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133A] gi|313599517|gb|EFR78360.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133C] gi|313642859|gb|EFS07439.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a04] gi|313644663|gb|EFS09243.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0082] Length = 747 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ L+ +P +L +T T AA EM RV I+ + Sbjct: 33 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 84 >gi|229009788|ref|ZP_04167008.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides DSM 2048] gi|228751406|gb|EEM01212.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides DSM 2048] Length = 743 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ LL P +L +T T AA EM R+ +++ Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLV 79 >gi|156743315|ref|YP_001433444.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941] gi|156234643|gb|ABU59426.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941] Length = 659 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71 + L++ +Q A + P V A AGSGKT +L R+ L+ PS +L LT T Sbjct: 6 MSLLASLNPKQYTAVTAPPGPILVRAGAGSGKTRVLTLRIAYLIAECGVSPSHILALTFT 65 Query: 72 KAAAAEMSHRV 82 AA EM R+ Sbjct: 66 NKAAREMRQRL 76 >gi|325956252|ref|YP_004286862.1| ATP-dependent helicase [Lactobacillus acidophilus 30SC] gi|325332817|gb|ADZ06725.1| ATP-dependent helicase [Lactobacillus acidophilus 30SC] gi|327183068|gb|AEA31515.1| ATP-dependent helicase [Lactobacillus amylovorus GRL 1118] Length = 748 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 V A AGSGKT +L +R+ L+ N P +L +T T AA EM R Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAATEMRER 73 >gi|120603850|ref|YP_968250.1| UvrD/REP helicase [Desulfovibrio vulgaris DP4] gi|120564079|gb|ABM29823.1| UvrD/REP helicase [Desulfovibrio vulgaris DP4] Length = 719 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 27/46 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 V A AGSGKT +V R+ LL S++L LT T+ AA EM R Sbjct: 25 VIAGAGSGKTRTVVYRLANLLERGVPASSILLLTFTRKAANEMLQR 70 >gi|89901806|ref|YP_524277.1| UvrD/REP helicase [Rhodoferax ferrireducens T118] gi|89346543|gb|ABD70746.1| ATP-dependent DNA helicase UvrD [Rhodoferax ferrireducens T118] Length = 814 Score = 38.5 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ EQ A + P A + A AGSGKT +L R+ LL P +L +T T Sbjct: 27 LLQHLNPEQRAAVTLPAEHALILAGAGSGKTRVLTTRIAWLLQTGQVTPGGVLAVTFTNK 86 Query: 74 AAAEMSHRVLEII 86 AA EM R+ ++ Sbjct: 87 AAKEMMTRLSSML 99 >gi|82544714|ref|YP_408661.1| DNA helicase IV [Shigella boydii Sb227] gi|81246125|gb|ABB66833.1| DNA helicase IV [Shigella boydii Sb227] gi|332093340|gb|EGI98398.1| helicase IV [Shigella boydii 3594-74] Length = 684 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|83942766|ref|ZP_00955227.1| DNA helicase II, putative [Sulfitobacter sp. EE-36] gi|83846859|gb|EAP84735.1| DNA helicase II, putative [Sulfitobacter sp. EE-36] Length = 806 Score = 38.5 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ L+ A P+ +L +T T AA EM +RV Sbjct: 50 AGAGTGKTKALTARIVHLMNTGRARPNEILAVTFTNKAAREMKNRV 95 >gi|145638900|ref|ZP_01794508.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittII] gi|145271872|gb|EDK11781.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittII] gi|309750876|gb|ADO80860.1| Exodeoxyribonuclease V, beta subunit [Haemophilus influenzae R2866] Length = 1211 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 30/145 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT+ + LRLLL + +L +T T+ A E+ ++ E IT Sbjct: 20 IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79 Query: 88 AWSHLSDEI--LSAEITKIQGKKPNKS-----------DMSKARHLLITILETPGGLKVQ 134 D I L+A K Q K K+ D+ +A H L + + Sbjct: 80 ------DAIDKLTA-FAKTQDKSAFKNDEFLTALCDNLDIFEAIHRLKLAEQNMDLAAIY 132 Query: 135 TIHAFCEAIMQQFPLEANITSHFAI 159 TIH FC ++ Q+ + I HF + Sbjct: 133 TIHGFCRRMLMQYAFHSGI--HFNL 155 >gi|323973162|gb|EGB68354.1| UvrD/REP helicase [Escherichia coli TA007] Length = 673 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|320096305|ref|ZP_08027873.1| excision endonuclease subunit UvrD [Actinomyces sp. oral taxon 178 str. F0338] gi|319976764|gb|EFW08537.1| excision endonuclease subunit UvrD [Actinomyces sp. oral taxon 178 str. F0338] Length = 436 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 24/125 (19%) Query: 14 IDLISQTKSEQLLASDPTRSA---------WVSANAGSGKTHILVQRVLRLLLANA-HPS 63 I +S + +E L A DP + A V A AG+GKT + R+ A PS Sbjct: 2 IRTMSLSPNELLDALDPDQRAVATQVAGPLAVLAGAGTGKTRAITYRIAYGAAVGAFDPS 61 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L +T TK AA EM HR+ + + + Q + + + + + RH T Sbjct: 62 NVLAVTFTKRAAYEMRHRLAAL--------------GVPRAQARTFHSAALRQLRHFWPT 107 Query: 124 ILETP 128 ++ P Sbjct: 108 VVGGP 112 >gi|289607095|emb|CBI60889.1| unnamed protein product [Sordaria macrospora] Length = 111 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 +++ + + +L +D V A AG+GKT L R+ LL A+PS +L +T T AA Sbjct: 16 LNEPQRDAVLTTD--GPVLVLAGAGTGKTAALTARLAHLLYTRKAYPSEILSVTFTNKAA 73 Query: 76 AEMSHRVLEII 86 EM RV ++ Sbjct: 74 REMRERVGRLV 84 >gi|258616015|ref|ZP_05713785.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium DO] Length = 706 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A AGSGKT +L R+ L+ +P +L +T T AA EM RV I+ + Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILASGG 83 >gi|257898302|ref|ZP_05677955.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com15] gi|257836214|gb|EEV61288.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com15] Length = 748 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ L+ +P +L +T T AA EM RV I+ + Sbjct: 33 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 84 >gi|254470528|ref|ZP_05083932.1| UvrD/REP helicase domain protein [Pseudovibrio sp. JE062] gi|211960839|gb|EEA96035.1| UvrD/REP helicase domain protein [Pseudovibrio sp. JE062] Length = 812 Score = 38.5 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Query: 22 SEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMS 79 +EQ LA + V A AG+GKT +L R+ +L +A P +L +T T AA EM Sbjct: 51 AEQRLAVETINGPVLVLAGAGTGKTRVLTTRIAHILATGHATPGQILAVTFTNKAAREMK 110 Query: 80 HRV 82 R+ Sbjct: 111 ERI 113 >gi|330827920|ref|YP_004390872.1| exodeoxyribonuclease V subunit beta [Aeromonas veronii B565] gi|328803056|gb|AEB48255.1| Exodeoxyribonuclease V, beta subunit [Aeromonas veronii B565] Length = 1199 Score = 38.5 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 32/141 (22%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN----------AHPST---------LLCLTHTKAAAA 76 + A+AG+GKT+ + LRLLL + PS +L +T T+AA A Sbjct: 18 IEASAGTGKTYTIAGLYLRLLLGHGPLIEEGADAGQPSAHERPLSVTEILVVTFTEAATA 77 Query: 77 EMSHRV------LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 E+ R+ + H SD +L+ + +++ D A L+ Sbjct: 78 ELRGRIRGRIHEARLAFMRGHSSDTLLAQLLAEVE-------DHELAARRLLAAERQMDE 130 Query: 131 LKVQTIHAFCEAIMQQFPLEA 151 V TIH FC+ +++Q E+ Sbjct: 131 AAVFTIHGFCQRMLKQNAFES 151 >gi|307708679|ref|ZP_07645142.1| recombination helicase AddA [Streptococcus mitis NCTC 12261] gi|307615253|gb|EFN94463.1| recombination helicase AddA [Streptococcus mitis NCTC 12261] Length = 1216 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGIEISQLFISTFTVKAATELKERL 91 >gi|261207461|ref|ZP_05922147.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TC 6] gi|260078352|gb|EEW66057.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TC 6] Length = 747 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ L+ +P +L +T T AA EM RV I+ + Sbjct: 33 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 84 >gi|256018779|ref|ZP_05432644.1| DNA helicase IV [Shigella sp. D9] gi|300824148|ref|ZP_07104267.1| UvrD/REP helicase [Escherichia coli MS 119-7] gi|331667345|ref|ZP_08368210.1| helicase IV (75 kDa helicase) [Escherichia coli TA271] gi|300523324|gb|EFK44393.1| UvrD/REP helicase [Escherichia coli MS 119-7] gi|331065701|gb|EGI37594.1| helicase IV (75 kDa helicase) [Escherichia coli TA271] Length = 684 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|91772773|ref|YP_565465.1| ATP-dependent DNA helicase Rep [Methanococcoides burtonii DSM 6242] gi|91711788|gb|ABE51715.1| DNA helicase, ATP dependent [Methanococcoides burtonii DSM 6242] Length = 587 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 +V A+AGSGKT +L +RV R LL + +L LT T A E+ R+ +I Sbjct: 23 YVKASAGSGKTRVLTERV-RYLLDKTN-KKVLALTFTNKAGEEIKERLSDI 71 >gi|191166604|ref|ZP_03028433.1| helicase IV [Escherichia coli B7A] gi|260854254|ref|YP_003228145.1| DNA helicase IV [Escherichia coli O26:H11 str. 11368] gi|260867133|ref|YP_003233535.1| DNA helicase IV [Escherichia coli O111:H- str. 11128] gi|190903409|gb|EDV63129.1| helicase IV [Escherichia coli B7A] gi|257752903|dbj|BAI24405.1| DNA helicase IV [Escherichia coli O26:H11 str. 11368] gi|257763489|dbj|BAI34984.1| DNA helicase IV [Escherichia coli O111:H- str. 11128] gi|323175411|gb|EFZ61006.1| helicase IV [Escherichia coli 1180] Length = 684 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|157155618|ref|YP_001462195.1| DNA helicase IV [Escherichia coli E24377A] gi|193066692|ref|ZP_03047722.1| helicase IV [Escherichia coli E22] gi|194430210|ref|ZP_03062709.1| helicase IV [Escherichia coli B171] gi|260843211|ref|YP_003220989.1| DNA helicase IV [Escherichia coli O103:H2 str. 12009] gi|293433259|ref|ZP_06661687.1| DNA helicase IV [Escherichia coli B088] gi|157077648|gb|ABV17356.1| helicase IV [Escherichia coli E24377A] gi|192925661|gb|EDV80325.1| helicase IV [Escherichia coli E22] gi|194411746|gb|EDX28069.1| helicase IV [Escherichia coli B171] gi|257758358|dbj|BAI29855.1| DNA helicase IV [Escherichia coli O103:H2 str. 12009] gi|291324078|gb|EFE63500.1| DNA helicase IV [Escherichia coli B088] gi|320200191|gb|EFW74779.1| DNA helicase IV [Escherichia coli EC4100B] gi|323159593|gb|EFZ45573.1| helicase IV [Escherichia coli E128010] gi|323185327|gb|EFZ70691.1| helicase IV [Escherichia coli 1357] Length = 684 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|320196549|gb|EFW71172.1| DNA helicase IV [Escherichia coli WV_060327] Length = 684 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|307311651|ref|ZP_07591291.1| UvrD/REP helicase [Escherichia coli W] gi|306908206|gb|EFN38705.1| UvrD/REP helicase [Escherichia coli W] gi|315060247|gb|ADT74574.1| DNA helicase IV [Escherichia coli W] gi|323379193|gb|ADX51461.1| UvrD/REP helicase [Escherichia coli KO11] Length = 684 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|251788839|ref|YP_003003560.1| DNA helicase IV [Dickeya zeae Ech1591] gi|247537460|gb|ACT06081.1| UvrD/REP helicase [Dickeya zeae Ech1591] Length = 685 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A A P +L L + AA EM+ R+ E Sbjct: 214 VLAGAGSGKTSVLVARAAWLLHRAEASPEQILLLAFGRQAADEMNGRIHE 263 >gi|238762127|ref|ZP_04623099.1| Helicase IV (75 kDa helicase) [Yersinia kristensenii ATCC 33638] gi|238699474|gb|EEP92219.1| Helicase IV (75 kDa helicase) [Yersinia kristensenii ATCC 33638] Length = 684 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%) Query: 4 HNSFQEHS---ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59 H +EH ++++ +S+ + S V A AGSGKT +LV R LL N Sbjct: 179 HRMLEEHQDFFQSVETSPLNESQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNE 238 Query: 60 AHPSTLLCLTHTKAAAAEMSHRV 82 A P +L L + AA EM+ R+ Sbjct: 239 ALPEQILLLAFGRQAADEMNSRI 261 >gi|254432659|ref|ZP_05046362.1| exodeoxyribonuclease V, beta subunit [Cyanobium sp. PCC 7001] gi|197627112|gb|EDY39671.1| exodeoxyribonuclease V, beta subunit [Cyanobium sp. PCC 7001] Length = 1248 Score = 38.5 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 57/131 (43%), Gaps = 22/131 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLE-IITAWSHLS 93 + A+AG+GKT L VLR + P LL +T T AAAAE+ R+ + + TA HL Sbjct: 19 LEASAGTGKTFSLAHLVLRYVSEAEVPLRQLLVVTFTNAAAAELRDRIGQRLQTALGHLD 78 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHL-------------LITILETPGGLKVQTIHAFC 140 + E N D S L L+ LE G + TIH FC Sbjct: 79 RGEAAVETG-------NPVDPSLEAWLQWARPRAALLRAPLLLALEDLDGADITTIHGFC 131 Query: 141 EAIMQQFPLEA 151 +Q+ LEA Sbjct: 132 LRTLQRQALEA 142 >gi|193070024|ref|ZP_03050971.1| helicase IV [Escherichia coli E110019] gi|209918215|ref|YP_002292299.1| DNA helicase IV [Escherichia coli SE11] gi|218553549|ref|YP_002386462.1| DNA helicase IV [Escherichia coli IAI1] gi|218694437|ref|YP_002402104.1| DNA helicase IV [Escherichia coli 55989] gi|192956621|gb|EDV87077.1| helicase IV [Escherichia coli E110019] gi|209911474|dbj|BAG76548.1| DNA helicase IV [Escherichia coli SE11] gi|218351169|emb|CAU96873.1| DNA helicase IV [Escherichia coli 55989] gi|218360317|emb|CAQ97867.1| DNA helicase IV [Escherichia coli IAI1] gi|324117174|gb|EGC11082.1| UvrD/REP helicase [Escherichia coli E1167] Length = 684 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|74311519|ref|YP_309938.1| DNA helicase IV [Shigella sonnei Ss046] gi|187731377|ref|YP_001880839.1| DNA helicase IV [Shigella boydii CDC 3083-94] gi|73854996|gb|AAZ87703.1| DNA helicase IV [Shigella sonnei Ss046] gi|187428369|gb|ACD07643.1| helicase IV [Shigella boydii CDC 3083-94] gi|320187172|gb|EFW61873.1| DNA helicase IV [Shigella flexneri CDC 796-83] gi|323165442|gb|EFZ51229.1| helicase IV [Shigella sonnei 53G] gi|323174930|gb|EFZ60545.1| helicase IV [Escherichia coli LT-68] Length = 684 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|16128929|ref|NP_415482.1| DNA helicase IV [Escherichia coli str. K-12 substr. MG1655] gi|89107812|ref|AP_001592.1| DNA helicase IV [Escherichia coli str. K-12 substr. W3110] gi|157160483|ref|YP_001457801.1| DNA helicase IV [Escherichia coli HS] gi|170080620|ref|YP_001729940.1| DNA helicase IV [Escherichia coli str. K-12 substr. DH10B] gi|188495557|ref|ZP_03002827.1| helicase IV [Escherichia coli 53638] gi|194440051|ref|ZP_03072107.1| helicase IV [Escherichia coli 101-1] gi|238900220|ref|YP_002926016.1| DNA helicase IV [Escherichia coli BW2952] gi|253774008|ref|YP_003036839.1| DNA helicase IV [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161076|ref|YP_003044184.1| DNA helicase IV [Escherichia coli B str. REL606] gi|256023336|ref|ZP_05437201.1| DNA helicase IV [Escherichia sp. 4_1_40B] gi|293414242|ref|ZP_06656891.1| helicase IV [Escherichia coli B185] gi|301022514|ref|ZP_07186389.1| UvrD/REP helicase [Escherichia coli MS 196-1] gi|307137592|ref|ZP_07496948.1| DNA helicase IV [Escherichia coli H736] gi|2506500|sp|P15038|HELD_ECOLI RecName: Full=Helicase IV; AltName: Full=75 kDa helicase gi|1651471|dbj|BAA35727.1| DNA helicase IV [Escherichia coli str. K12 substr. W3110] gi|1787196|gb|AAC74048.1| DNA helicase IV [Escherichia coli str. K-12 substr. MG1655] gi|157066163|gb|ABV05418.1| helicase IV [Escherichia coli HS] gi|169888455|gb|ACB02162.1| DNA helicase IV [Escherichia coli str. K-12 substr. DH10B] gi|188490756|gb|EDU65859.1| helicase IV [Escherichia coli 53638] gi|194421015|gb|EDX37046.1| helicase IV [Escherichia coli 101-1] gi|238860821|gb|ACR62819.1| DNA helicase IV [Escherichia coli BW2952] gi|242376777|emb|CAQ31490.1| DNA helicase IV [Escherichia coli BL21(DE3)] gi|253325052|gb|ACT29654.1| UvrD/REP helicase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972977|gb|ACT38648.1| DNA helicase IV [Escherichia coli B str. REL606] gi|253977191|gb|ACT42861.1| DNA helicase IV [Escherichia coli BL21(DE3)] gi|260449892|gb|ACX40314.1| UvrD/REP helicase [Escherichia coli DH1] gi|291434300|gb|EFF07273.1| helicase IV [Escherichia coli B185] gi|299881211|gb|EFI89422.1| UvrD/REP helicase [Escherichia coli MS 196-1] gi|309701241|emb|CBJ00541.1| helicase IV [Escherichia coli ETEC H10407] gi|315135611|dbj|BAJ42770.1| DNA helicase IV [Escherichia coli DH1] gi|315619158|gb|EFU99738.1| helicase IV [Escherichia coli 3431] gi|323938067|gb|EGB34329.1| UvrD/REP helicase [Escherichia coli E1520] gi|323942877|gb|EGB39042.1| UvrD/REP helicase [Escherichia coli E482] gi|323962848|gb|EGB58423.1| UvrD/REP helicase [Escherichia coli H489] Length = 684 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|320175155|gb|EFW50265.1| DNA helicase IV [Shigella dysenteriae CDC 74-1112] Length = 684 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|281600327|gb|ADA73311.1| DNA helicase IV [Shigella flexneri 2002017] Length = 707 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 237 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 286 >gi|172035283|ref|YP_001801784.1| hypothetical protein cce_0367 [Cyanothece sp. ATCC 51142] gi|171696737|gb|ACB49718.1| unknown [Cyanothece sp. ATCC 51142] Length = 572 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 8/130 (6%) Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL---LITILETPGGLKVQTIHAFCEA 142 + WS+ SD IL+ E IQG K +D +A L I + GL+ H F A Sbjct: 246 VIYWSYSSDRILTLEW--IQGYKLTDTDKIRAAGLDPYAIVKIGVTSGLRQLLEHGFFHA 303 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE---LKKAFYEILEIS 199 L A + A D +L EE K++ +S++ N++ L + F ++ ++ Sbjct: 304 DPHPGNLFATLDGRMAFIDFGMMDQLEEETKETIASSVVQLINQDYDALARDFVKLGFLT 363 Query: 200 NDEDIETLIS 209 D DIE +I Sbjct: 364 PDTDIEPIIP 373 >gi|110804978|ref|YP_688498.1| DNA helicase IV [Shigella flexneri 5 str. 8401] gi|110614526|gb|ABF03193.1| DNA helicase IV [Shigella flexneri 5 str. 8401] Length = 707 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 237 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 286 >gi|15800821|ref|NP_286837.1| DNA helicase IV [Escherichia coli O157:H7 EDL933] gi|15830300|ref|NP_309073.1| DNA helicase IV [Escherichia coli O157:H7 str. Sakai] gi|168751278|ref|ZP_02776300.1| helicase IV [Escherichia coli O157:H7 str. EC4113] gi|168758918|ref|ZP_02783925.1| helicase IV [Escherichia coli O157:H7 str. EC4401] gi|168765223|ref|ZP_02790230.1| helicase IV [Escherichia coli O157:H7 str. EC4501] gi|168777449|ref|ZP_02802456.1| helicase IV [Escherichia coli O157:H7 str. EC4196] gi|168780909|ref|ZP_02805916.1| helicase IV [Escherichia coli O157:H7 str. EC4076] gi|168787395|ref|ZP_02812402.1| helicase IV [Escherichia coli O157:H7 str. EC869] gi|168801336|ref|ZP_02826343.1| helicase IV [Escherichia coli O157:H7 str. EC508] gi|195935149|ref|ZP_03080531.1| DNA helicase IV [Escherichia coli O157:H7 str. EC4024] gi|208805656|ref|ZP_03247993.1| helicase IV [Escherichia coli O157:H7 str. EC4206] gi|208815646|ref|ZP_03256825.1| helicase IV [Escherichia coli O157:H7 str. EC4045] gi|209400242|ref|YP_002269630.1| helicase IV [Escherichia coli O157:H7 str. EC4115] gi|217324124|ref|ZP_03440208.1| helicase IV [Escherichia coli O157:H7 str. TW14588] gi|254792162|ref|YP_003076999.1| DNA helicase IV [Escherichia coli O157:H7 str. TW14359] gi|261227465|ref|ZP_05941746.1| DNA helicase IV [Escherichia coli O157:H7 str. FRIK2000] gi|261256112|ref|ZP_05948645.1| DNA helicase IV [Escherichia coli O157:H7 str. FRIK966] gi|12514147|gb|AAG55448.1|AE005286_7 DNA helicase IV [Escherichia coli O157:H7 str. EDL933] gi|13360506|dbj|BAB34469.1| DNA helicase IV [Escherichia coli O157:H7 str. Sakai] gi|187767340|gb|EDU31184.1| helicase IV [Escherichia coli O157:H7 str. EC4196] gi|188014697|gb|EDU52819.1| helicase IV [Escherichia coli O157:H7 str. EC4113] gi|189001300|gb|EDU70286.1| helicase IV [Escherichia coli O157:H7 str. EC4076] gi|189354358|gb|EDU72777.1| helicase IV [Escherichia coli O157:H7 str. EC4401] gi|189364952|gb|EDU83368.1| helicase IV [Escherichia coli O157:H7 str. EC4501] gi|189372675|gb|EDU91091.1| helicase IV [Escherichia coli O157:H7 str. EC869] gi|189376521|gb|EDU94937.1| helicase IV [Escherichia coli O157:H7 str. EC508] gi|208725457|gb|EDZ75058.1| helicase IV [Escherichia coli O157:H7 str. EC4206] gi|208732294|gb|EDZ80982.1| helicase IV [Escherichia coli O157:H7 str. EC4045] gi|209161642|gb|ACI39075.1| helicase IV [Escherichia coli O157:H7 str. EC4115] gi|209774388|gb|ACI85506.1| DNA helicase IV [Escherichia coli] gi|209774390|gb|ACI85507.1| DNA helicase IV [Escherichia coli] gi|209774392|gb|ACI85508.1| DNA helicase IV [Escherichia coli] gi|209774396|gb|ACI85510.1| DNA helicase IV [Escherichia coli] gi|217320345|gb|EEC28769.1| helicase IV [Escherichia coli O157:H7 str. TW14588] gi|254591562|gb|ACT70923.1| DNA helicase IV [Escherichia coli O157:H7 str. TW14359] gi|320188698|gb|EFW63358.1| DNA helicase IV [Escherichia coli O157:H7 str. EC1212] gi|320637830|gb|EFX07622.1| DNA helicase IV [Escherichia coli O157:H7 str. G5101] gi|320642955|gb|EFX12156.1| DNA helicase IV [Escherichia coli O157:H- str. 493-89] gi|320648412|gb|EFX17067.1| DNA helicase IV [Escherichia coli O157:H- str. H 2687] gi|320653728|gb|EFX21802.1| DNA helicase IV [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659571|gb|EFX27134.1| DNA helicase IV [Escherichia coli O55:H7 str. USDA 5905] gi|320664342|gb|EFX31493.1| DNA helicase IV [Escherichia coli O157:H7 str. LSU-61] gi|326338892|gb|EGD62708.1| DNA helicase IV [Escherichia coli O157:H7 str. 1125] gi|326341711|gb|EGD65499.1| DNA helicase IV [Escherichia coli O157:H7 str. 1044] Length = 684 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|312971094|ref|ZP_07785273.1| helicase IV [Escherichia coli 1827-70] gi|310336855|gb|EFQ02022.1| helicase IV [Escherichia coli 1827-70] Length = 684 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|330910735|gb|EGH39245.1| DNA helicase 4 [Escherichia coli AA86] Length = 684 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|291281962|ref|YP_003498780.1| DNA helicase IV [Escherichia coli O55:H7 str. CB9615] gi|209774394|gb|ACI85509.1| DNA helicase IV [Escherichia coli] gi|290761835|gb|ADD55796.1| DNA helicase IV [Escherichia coli O55:H7 str. CB9615] Length = 684 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|170020637|ref|YP_001725591.1| DNA helicase IV [Escherichia coli ATCC 8739] gi|169755565|gb|ACA78264.1| UvrD/REP helicase [Escherichia coli ATCC 8739] Length = 684 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|91787605|ref|YP_548557.1| ATP-dependent DNA helicase UvrD [Polaromonas sp. JS666] gi|91696830|gb|ABE43659.1| ATP-dependent DNA helicase UvrD [Polaromonas sp. JS666] Length = 825 Score = 38.5 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 P A + A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 PNEHALILAGAGSGKTRVLTTRIAWLLQTGQVSPGGILAVTFTNKAAKEMLARL 87 >gi|90579044|ref|ZP_01234854.1| hypothetical helicase IV [Vibrio angustum S14] gi|90439877|gb|EAS65058.1| hypothetical helicase IV [Vibrio angustum S14] Length = 693 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 V A AG+GKT +LV R L+ + A P +L L + AA EMS R+ E ++ Sbjct: 214 VLAGAGTGKTSVLVARAGYLIASQQAVPEDILMLAFGRKAAEEMSERMGEKVS 266 >gi|260577078|ref|ZP_05845057.1| UvrD/REP helicase [Rhodobacter sp. SW2] gi|259020748|gb|EEW24065.1| UvrD/REP helicase [Rhodobacter sp. SW2] Length = 959 Score = 38.5 bits (88), Expect = 0.77, Method: Composition-based stats. Identities = 50/202 (24%), Positives = 87/202 (43%), Gaps = 16/202 (7%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PS 63 + +++ +TI+ T ++L + V A AGSGKT ++ + L+ A P Sbjct: 165 DRWKDFFDTIESKPLTPEQRLSIVVDEDATLVLAGAGSGKTSVITAKAAYLVKAGIRRPE 224 Query: 64 TLLCLTHTKAAAAEMSHRV-----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118 +L L K AAAEMS RV + I+ H I I ++G KP +D + Sbjct: 225 EILLLAFAKNAAAEMSERVEARSGVPIVARTFH---AIAYDIIGIVEGSKPALADHATDD 281 Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 +++ V++ A +AI+Q F +HF + + + + + + Sbjct: 282 LAFTNLIKQILKDLVRSQSAVSKAIIQWF-------AHFLVEPKTEWDFNTKHEFYTHME 334 Query: 179 SIMLDNNEELKKAFYEILEISN 200 S L + K YE L+I+N Sbjct: 335 SQDLRTLQGEKVKSYEELQIAN 356 >gi|229847430|ref|ZP_04467530.1| ATP-dependent DNA helicase [Haemophilus influenzae 7P49H1] gi|229809668|gb|EEP45394.1| ATP-dependent DNA helicase [Haemophilus influenzae 7P49H1] Length = 671 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T S V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGSCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67 >gi|215486080|ref|YP_002328511.1| DNA helicase IV [Escherichia coli O127:H6 str. E2348/69] gi|312968979|ref|ZP_07783186.1| helicase IV [Escherichia coli 2362-75] gi|215264152|emb|CAS08496.1| DNA helicase IV [Escherichia coli O127:H6 str. E2348/69] gi|312286381|gb|EFR14294.1| helicase IV [Escherichia coli 2362-75] Length = 684 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|68249990|ref|YP_249102.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 86-028NP] gi|68058189|gb|AAX88442.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 86-028NP] Length = 1211 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 32/146 (21%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT+ + LRLLL + +L +T T+ A E+ ++ E IT Sbjct: 20 IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79 Query: 88 -AWSHLS-------------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 A + L+ DE L+A + D+ +A H L + + Sbjct: 80 DAINKLTAFAKTQDKSAFKNDEFLTALCDNL--------DIFEAIHRLKLAEQNMDLAAI 131 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAI 159 TIH FC ++ Q+ + I HF + Sbjct: 132 YTIHGFCRRMLMQYAFHSGI--HFNL 155 >gi|16273231|ref|NP_439472.1| exodeoxyribonuclease V subunit beta [Haemophilus influenzae Rd KW20] gi|260581332|ref|ZP_05849148.1| exodeoxyribonuclease V, beta subunit [Haemophilus influenzae RdAW] gi|1169572|sp|P45157|EX5B_HAEIN RecName: Full=Exodeoxyribonuclease V beta chain gi|1574781|gb|AAC22966.1| exodeoxyribonuclease V, beta chain (recB) [Haemophilus influenzae Rd KW20] gi|260091999|gb|EEW75946.1| exodeoxyribonuclease V, beta subunit [Haemophilus influenzae RdAW] Length = 1211 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 30/145 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT+ + LRLLL + +L +T T+ A E+ ++ E IT Sbjct: 20 IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79 Query: 88 AWSHLSDEI--LSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGGLKVQ 134 D I L+A K Q K K+D + +A H L + + Sbjct: 80 ------DAINKLTA-FAKTQDKSAFKNDEFLTALCDNLNIFEAIHRLKLAEQNMDLAAIY 132 Query: 135 TIHAFCEAIMQQFPLEANITSHFAI 159 TIH FC ++ Q+ + I HF + Sbjct: 133 TIHGFCRRMLMQYAFHSGI--HFNL 155 >gi|332171051|gb|AEE20306.1| UvrD/REP helicase [Krokinobacter diaphorus 4H-3-7-5] Length = 689 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT +V R L+ + P + LT TK AA+E+ RV Sbjct: 32 AGAGTGKTKTIVGRAEYLIQSGVRPEKIQILTFTKRAASEIVERV 76 >gi|320178594|gb|EFW53559.1| DNA helicase IV [Shigella boydii ATCC 9905] Length = 684 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|315224086|ref|ZP_07865926.1| ATP-dependent DNA helicase PcrA [Capnocytophaga ochracea F0287] gi|314945819|gb|EFS97828.1| ATP-dependent DNA helicase PcrA [Capnocytophaga ochracea F0287] Length = 789 Score = 38.5 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 27/51 (52%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ +L LT T AA EM R+ ++ Sbjct: 28 VIAGAGSGKTRVLTYRIANLMREGVDAFNILALTFTNKAANEMKKRIASLV 78 >gi|300819206|ref|ZP_07099407.1| UvrD/REP helicase [Escherichia coli MS 107-1] gi|300925355|ref|ZP_07141242.1| UvrD/REP helicase [Escherichia coli MS 182-1] gi|301327207|ref|ZP_07220469.1| UvrD/REP helicase [Escherichia coli MS 78-1] gi|300418522|gb|EFK01833.1| UvrD/REP helicase [Escherichia coli MS 182-1] gi|300528225|gb|EFK49287.1| UvrD/REP helicase [Escherichia coli MS 107-1] gi|300846188|gb|EFK73948.1| UvrD/REP helicase [Escherichia coli MS 78-1] Length = 715 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294 >gi|281178086|dbj|BAI54416.1| DNA helicase IV [Escherichia coli SE15] Length = 684 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|237747303|ref|ZP_04577783.1| rep helicase [Oxalobacter formigenes HOxBLS] gi|229378654|gb|EEO28745.1| rep helicase [Oxalobacter formigenes HOxBLS] Length = 687 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 37/137 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ + + + + LT T AAAEM R+ +++ Sbjct: 26 VLAGAGSGKTRVITQKIAHLIGSGQYEARHIAALTFTNKAAAEMQERISRLLS------- 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +D S+ L + T H+ I++Q E N+ Sbjct: 79 ---------------EPADASQ--------------LTISTFHSLGVKILRQEAKELNLK 109 Query: 155 SHFAIADEEQSKKLIEE 171 F+I D + L+++ Sbjct: 110 DRFSILDSDDCFSLVQD 126 >gi|256820896|ref|YP_003142175.1| UvrD/REP helicase [Capnocytophaga ochracea DSM 7271] gi|256582479|gb|ACU93614.1| UvrD/REP helicase [Capnocytophaga ochracea DSM 7271] Length = 789 Score = 38.5 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 27/51 (52%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ +L LT T AA EM R+ ++ Sbjct: 28 VIAGAGSGKTRVLTYRIANLMREGVDAFNILALTFTNKAANEMKKRIASLV 78 >gi|170681833|ref|YP_001744207.1| DNA helicase IV [Escherichia coli SMS-3-5] gi|170519551|gb|ACB17729.1| helicase IV [Escherichia coli SMS-3-5] Length = 684 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|153931653|ref|YP_001383067.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC 19397] gi|153934674|ref|YP_001386616.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. Hall] gi|152927697|gb|ABS33197.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC 19397] gi|152930588|gb|ABS36087.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. Hall] Length = 884 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 53/152 (34%), Gaps = 41/152 (26%) Query: 14 IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D+IS Q A T V A AGSGKT L R + L+ + +LC T T Sbjct: 3 LDVISGLNDAQREAVTTTEGYIRVIAGAGSGKTKALTSRYIYLVHELGISTANILCATFT 62 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +I + GL Sbjct: 63 NKAAREMKKRIRTMIG--------------------------------------DNDTGL 84 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEE 163 + T H FC ++++ N +F + D E Sbjct: 85 -IGTFHGFCRRLLKEDIYTINYPDNFIVMDNE 115 >gi|118443009|ref|YP_878906.1| ATP-dependent DNA helicase PcrA, putative [Clostridium novyi NT] gi|118133465|gb|ABK60509.1| ATP-dependent DNA helicase PcrA, putative [Clostridium novyi NT] Length = 760 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIIT 87 V A AGSGKT +L R+ ++ P +L +T T AA EM R+ ++++ Sbjct: 24 VLAGAGSGKTRVLTYRIAHMIEDLGIPQYNILAITFTNKAAGEMKDRIKKLVS 76 >gi|118380928|ref|XP_001023626.1| UvrD/REP helicase family protein [Tetrahymena thermophila] gi|89305393|gb|EAS03381.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210] Length = 1203 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 22/163 (13%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 ++ SD ++ + A AGSGKT L+ RV L+ P ++ T AA ++ + + Sbjct: 19 IVYSDINQNQKIEACAGSGKTTTLIYRVKYLINNKIKPQKIILTTFNIEAAKNLNKKAKQ 78 Query: 85 IITAWSHLSDEILSAE------------ITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 ++ + +I++ + I KK K ++ L++ L + G K Sbjct: 79 VLETKDQTNLKIVNIDKFIYEIYESNLKINDPLQKKYIKQSLTYISSLVLKYLSSDQGRK 138 Query: 133 V--QTIHAFCEAIMQQFPLEANITSHF--------AIADEEQS 165 + Q H F + ++ NI F AI DE Q+ Sbjct: 139 ILNQYSHFFFDEFQDINDIQYNILMQFCKNNCKIIAIGDEAQN 181 >gi|78189378|ref|YP_379716.1| DNA helicase II [Chlorobium chlorochromatii CaD3] gi|78171577|gb|ABB28673.1| ATP-dependent DNA helicase PcrA [Chlorobium chlorochromatii CaD3] Length = 743 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++ R+ L+ P +L LT T AA EM RV Sbjct: 25 VLAGAGSGKTRVITYRIAHLINNEGIAPRNILALTFTNKAAGEMRERV 72 >gi|331651986|ref|ZP_08353005.1| helicase IV (75 kDa helicase) [Escherichia coli M718] gi|331050264|gb|EGI22322.1| helicase IV (75 kDa helicase) [Escherichia coli M718] Length = 715 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294 >gi|315181034|gb|ADT87948.1| exodeoxyribonuclease V, beta subunit [Vibrio furnissii NCTC 11218] Length = 1214 Score = 38.5 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 11/126 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-----HPSTL-----LCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT + LRLLL + H S L L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTFTIAGLYLRLLLGHGSEHTRHASALTVDQILVVTFTEAATAELRDRIRAR 84 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 I + L+ ++ IQ D A LL+ V TIH FC+ ++ Sbjct: 85 IHD-ARLAFSRGKSDDPVIQPLLAEFVDHPLATRLLLNAERQMDEAAVYTIHGFCQRMLT 143 Query: 146 QFPLEA 151 Q E+ Sbjct: 144 QNAFES 149 >gi|309795048|ref|ZP_07689468.1| UvrD/REP helicase [Escherichia coli MS 145-7] gi|308121352|gb|EFO58614.1| UvrD/REP helicase [Escherichia coli MS 145-7] Length = 715 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294 >gi|301643487|ref|ZP_07243534.1| UvrD/REP helicase [Escherichia coli MS 146-1] gi|301078126|gb|EFK92932.1| UvrD/REP helicase [Escherichia coli MS 146-1] Length = 715 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294 >gi|300920996|ref|ZP_07137384.1| UvrD/REP helicase [Escherichia coli MS 115-1] gi|300412042|gb|EFJ95352.1| UvrD/REP helicase [Escherichia coli MS 115-1] gi|324019098|gb|EGB88317.1| UvrD/REP helicase [Escherichia coli MS 117-3] Length = 715 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294 >gi|260771453|ref|ZP_05880378.1| exodeoxyribonuclease V beta chain [Vibrio furnissii CIP 102972] gi|260613579|gb|EEX38773.1| exodeoxyribonuclease V beta chain [Vibrio furnissii CIP 102972] Length = 1214 Score = 38.5 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 11/126 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-----HPSTL-----LCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT + LRLLL + H S L L +T T+AA AE+ R+ Sbjct: 25 IEASAGTGKTFTIAGLYLRLLLGHGSEHTRHASALTVDQILVVTFTEAATAELRDRIRAR 84 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 I + L+ ++ IQ D A LL+ V TIH FC+ ++ Sbjct: 85 IHD-ARLAFSRGKSDDPVIQPLLAEFVDHPLATRLLLNAERQMDEAAVYTIHGFCQRMLT 143 Query: 146 QFPLEA 151 Q E+ Sbjct: 144 QNAFES 149 >gi|218688798|ref|YP_002397010.1| DNA helicase IV [Escherichia coli ED1a] gi|218426362|emb|CAR07187.1| DNA helicase IV [Escherichia coli ED1a] Length = 684 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|30062501|ref|NP_836672.1| DNA helicase IV [Shigella flexneri 2a str. 2457T] gi|56479783|ref|NP_706885.2| DNA helicase IV [Shigella flexneri 2a str. 301] gi|30040747|gb|AAP16478.1| DNA helicase IV [Shigella flexneri 2a str. 2457T] gi|56383334|gb|AAN42592.2| DNA helicase IV [Shigella flexneri 2a str. 301] gi|313650788|gb|EFS15189.1| helicase IV [Shigella flexneri 2a str. 2457T] Length = 684 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|331676752|ref|ZP_08377448.1| helicase IV (75 kDa helicase) [Escherichia coli H591] gi|331075441|gb|EGI46739.1| helicase IV (75 kDa helicase) [Escherichia coli H591] gi|332102207|gb|EGJ05553.1| DNA helicase IV [Shigella sp. D9] Length = 715 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294 >gi|322378358|ref|ZP_08052814.1| DNA helicase II [Helicobacter suis HS1] gi|322380928|ref|ZP_08054999.1| DNA helicase II [Helicobacter suis HS5] gi|321146651|gb|EFX41480.1| DNA helicase II [Helicobacter suis HS5] gi|321149215|gb|EFX43659.1| DNA helicase II [Helicobacter suis HS1] Length = 684 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 V A AGSGKT L R+ L+ P L LT T AA+EM R +++I ++ Sbjct: 28 VLAGAGSGKTKTLTTRLAYLIGYVGIPPENTLTLTFTNKAASEMHQRAMKLIGRRTY 84 >gi|304405679|ref|ZP_07387338.1| ATP-dependent DNA helicase PcrA [Paenibacillus curdlanolyticus YK9] gi|304345718|gb|EFM11553.1| ATP-dependent DNA helicase PcrA [Paenibacillus curdlanolyticus YK9] Length = 801 Score = 38.5 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 61/156 (39%), Gaps = 47/156 (30%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ L+ P ++L +T T AA EM RV +++ Sbjct: 32 IMAGAGSGKTRVLTHRIAYLIEKKRVAPWSILAITFTNKAAREMQDRVAKLV-------- 83 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P+ SD + V T H+ C I+++ T Sbjct: 84 -------------GPSGSD-----------------IWVSTFHSMCVRILRKDISRIGFT 113 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 S F+I D + S + +IM + N + KK Sbjct: 114 SSFSILDSGD--------QLSVIRTIMKEQNIDTKK 141 >gi|300902873|ref|ZP_07120819.1| UvrD/REP helicase [Escherichia coli MS 84-1] gi|301302421|ref|ZP_07208552.1| UvrD/REP helicase [Escherichia coli MS 124-1] gi|300405086|gb|EFJ88624.1| UvrD/REP helicase [Escherichia coli MS 84-1] gi|300842260|gb|EFK70020.1| UvrD/REP helicase [Escherichia coli MS 124-1] gi|315258011|gb|EFU37979.1| UvrD/REP helicase [Escherichia coli MS 85-1] Length = 715 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294 >gi|291542836|emb|CBL15946.1| ATP-dependent DNA helicase PcrA [Ruminococcus bromii L2-63] Length = 749 Score = 38.5 bits (88), Expect = 0.79, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +LV R+ +L P +L +T T AA E+ R+ + Sbjct: 30 ILAGAGSGKTTVLVNRIAYILQCELCKPWQILAITFTNKAAGELKERICAAVP------- 82 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E + T H+ C I++++ T Sbjct: 83 -------------------------------EGGADIWAATFHSTCARILRRYGDRIGYT 111 Query: 155 SHFAIADEEQSKKLIEEAKK 174 SHF + + KKL+++ K Sbjct: 112 SHFTVYGTDDQKKLVKDILK 131 >gi|229003295|ref|ZP_04161125.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock1-4] gi|228757913|gb|EEM07128.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock1-4] Length = 747 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ LL P +L +T T AA EM R+ +++ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLV 83 >gi|331646223|ref|ZP_08347326.1| helicase IV (75 kDa helicase) [Escherichia coli M605] gi|331044975|gb|EGI17102.1| helicase IV (75 kDa helicase) [Escherichia coli M605] Length = 715 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294 >gi|297184355|gb|ADI20471.1| superfamily I DNA and RNA helicases [uncultured alpha proteobacterium EB080_L58F04] Length = 781 Score = 38.5 bits (88), Expect = 0.80, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AG+GKT L R+ LL A P +L +T T AA EM RV E++ Sbjct: 50 AGAGTGKTKALTCRIAHLLTTGRARPHEILSVTFTNKAAREMKSRVAELL 99 >gi|260430925|ref|ZP_05784896.1| ATP-dependent DNA helicase PcrA [Silicibacter lacuscaerulensis ITI-1157] gi|260414753|gb|EEX08012.1| ATP-dependent DNA helicase PcrA [Silicibacter lacuscaerulensis ITI-1157] Length = 800 Score = 38.5 bits (88), Expect = 0.80, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R+ LL A P+ +L +T T AA EM RV Sbjct: 52 AGAGTGKTKALTTRIAHLLNTGRARPNEILAVTFTNKAAREMKERV 97 >gi|228989471|ref|ZP_04149456.1| ATP-dependent DNA helicase pcrA [Bacillus pseudomycoides DSM 12442] gi|228770196|gb|EEM18775.1| ATP-dependent DNA helicase pcrA [Bacillus pseudomycoides DSM 12442] Length = 747 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ LL P +L +T T AA EM R+ +++ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLV 83 >gi|228995666|ref|ZP_04155329.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock3-17] gi|228764043|gb|EEM12927.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock3-17] Length = 747 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ LL P +L +T T AA EM R+ +++ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERIDKLV 83 >gi|194432359|ref|ZP_03064646.1| helicase IV [Shigella dysenteriae 1012] gi|194419246|gb|EDX35328.1| helicase IV [Shigella dysenteriae 1012] gi|332095922|gb|EGJ00929.1| helicase IV [Shigella dysenteriae 155-74] Length = 684 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|329123403|ref|ZP_08251967.1| exodeoxyribonuclease V beta subunit [Haemophilus aegyptius ATCC 11116] gi|327470985|gb|EGF16440.1| exodeoxyribonuclease V beta subunit [Haemophilus aegyptius ATCC 11116] Length = 1211 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 26/143 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT+ + LRLLL + +L +T T+ A E+ ++ E IT Sbjct: 20 IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79 Query: 88 AWSHLSDEILSAEITKIQGKKPNKS-----------DMSKARHLLITILETPGGLKVQTI 136 + + L+A K Q K K+ D+ +A H L + + TI Sbjct: 80 D----AIDKLTA-FAKTQDKSAFKNDEFLTALCDNLDIFEAIHRLKLAEQNMDLAAIYTI 134 Query: 137 HAFCEAIMQQFPLEANITSHFAI 159 H FC ++ Q+ + I HF + Sbjct: 135 HGFCRRMLMQYAFHSGI--HFNL 155 >gi|323976658|gb|EGB71746.1| UvrD/REP helicase [Escherichia coli TW10509] Length = 684 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|332162162|ref|YP_004298739.1| DNA helicase IV [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606214|emb|CBY27712.1| DNA helicase IV [Yersinia enterocolitica subsp. palearctica Y11] gi|325666392|gb|ADZ43036.1| DNA helicase IV [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 684 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%) Query: 4 HNSFQEHS---ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59 H +EH ++++ +S+ + S V A AGSGKT +LV R LL N Sbjct: 179 HRMLEEHQDFFQSVETSPLNESQSRAVVNGEDSVLVLAGAGSGKTSVLVARAGWLLRRNE 238 Query: 60 AHPSTLLCLTHTKAAAAEMSHRV 82 A P +L L + AA EM+ R+ Sbjct: 239 ALPEQILLLAFGRQAADEMNSRI 261 >gi|331682467|ref|ZP_08383086.1| helicase IV (75 kDa helicase) [Escherichia coli H299] gi|331080098|gb|EGI51277.1| helicase IV (75 kDa helicase) [Escherichia coli H299] Length = 684 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|300929663|ref|ZP_07145123.1| UvrD/REP helicase [Escherichia coli MS 187-1] gi|300949666|ref|ZP_07163649.1| UvrD/REP helicase [Escherichia coli MS 116-1] gi|300955382|ref|ZP_07167759.1| UvrD/REP helicase [Escherichia coli MS 175-1] gi|331641491|ref|ZP_08342626.1| helicase IV (75 kDa helicase) [Escherichia coli H736] gi|300317717|gb|EFJ67501.1| UvrD/REP helicase [Escherichia coli MS 175-1] gi|300450935|gb|EFK14555.1| UvrD/REP helicase [Escherichia coli MS 116-1] gi|300462401|gb|EFK25894.1| UvrD/REP helicase [Escherichia coli MS 187-1] gi|331038289|gb|EGI10509.1| helicase IV (75 kDa helicase) [Escherichia coli H736] Length = 715 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294 >gi|297620279|ref|YP_003708416.1| exodeoxyribonuclease V beta chain [Waddlia chondrophila WSU 86-1044] gi|297375580|gb|ADI37410.1| exodeoxyribonuclease V beta chain [Waddlia chondrophila WSU 86-1044] Length = 1120 Score = 38.5 bits (88), Expect = 0.80, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 9/122 (7%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 + A+AG+GKT + V+RLLL HP +L +T TK A +++ RV + I ++ Sbjct: 40 LEASAGTGKTFSIENLVVRLLLEGEHPLRIDEILIVTFTKMATSDLRVRVRDTI---ENV 96 Query: 93 SDEILSAEITKIQGKKPNKSDMSKAR---HLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + + + + +P D K R LL L ++ TIH FC ++ + + Sbjct: 97 VNALEKGVLGRFDYLEPIDRDERKKRPAIRLLERALIGFDEAQIFTIHGFCYRMLAEHGM 156 Query: 150 EA 151 + Sbjct: 157 DG 158 >gi|145635681|ref|ZP_01791377.1| ATP-dependent DNA helicase rep [Haemophilus influenzae PittAA] gi|145267076|gb|EDK07084.1| ATP-dependent DNA helicase rep [Haemophilus influenzae PittAA] Length = 671 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T S V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGSCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67 >gi|126461535|ref|YP_001042649.1| UvrD/REP helicase [Rhodobacter sphaeroides ATCC 17029] gi|126103199|gb|ABN75877.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides ATCC 17029] Length = 786 Score = 38.5 bits (88), Expect = 0.80, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AG+GKT L R++ LL A P+ +L +T T AA EM RV ++ Sbjct: 54 AGAGTGKTKALTARIVHLLDSGKARPNEILAVTFTNKAAREMKDRVARLL 103 >gi|254821918|ref|ZP_05226919.1| hypothetical protein MintA_18442 [Mycobacterium intracellulare ATCC 13950] Length = 400 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHT 71 + L T+ + + + P V A AG+GKT + RV+ L+AN + P+ +L LT T Sbjct: 33 LGLFPPTEEQSAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLIANGYAEPAQVLGLTFT 91 Query: 72 KAAAAEMSHRV 82 + AA ++ RV Sbjct: 92 RKAAGQLLRRV 102 >gi|227884078|ref|ZP_04001883.1| helicase IV [Escherichia coli 83972] gi|300978349|ref|ZP_07174222.1| UvrD/REP helicase [Escherichia coli MS 45-1] gi|301047779|ref|ZP_07194833.1| UvrD/REP helicase [Escherichia coli MS 185-1] gi|26107384|gb|AAN79567.1|AE016758_171 Helicase IV [Escherichia coli CFT073] gi|227838830|gb|EEJ49296.1| helicase IV [Escherichia coli 83972] gi|300300342|gb|EFJ56727.1| UvrD/REP helicase [Escherichia coli MS 185-1] gi|300409694|gb|EFJ93232.1| UvrD/REP helicase [Escherichia coli MS 45-1] gi|307552794|gb|ADN45569.1| DNA helicase IV [Escherichia coli ABU 83972] gi|315291182|gb|EFU50542.1| UvrD/REP helicase [Escherichia coli MS 153-1] Length = 715 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294 >gi|15834632|ref|NP_296391.1| exodeoxyribonuclease V, beta chain, putative [Chlamydia muridarum Nigg] Length = 1026 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 28/137 (20%) Query: 30 PTRSA----WVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRVL 83 PT S ++ A+AG+GKT + Q +LR LL T +L +T T AA E+ R+ Sbjct: 9 PTTSVSGKFFLEASAGTGKTFTIEQVILRSLLEGNVEQTKNILVVTFTNAATNELKLRIQ 68 Query: 84 EII--------TAWSHLSDEI---LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 E + A SH + +S++ TK+ K K R+ L T+ E + Sbjct: 69 ESLKQALTLFSQALSHPETPLPPYVSSQETKV------KQLYXKXRNSLATLDE----MN 118 Query: 133 VQTIHAFCEAIMQQ-FP 148 + TIH C ++Q FP Sbjct: 119 IFTIHGXCRFTLEQHFP 135 >gi|89094047|ref|ZP_01166991.1| ATP-dependent exoDNAse beta subunit [Oceanospirillum sp. MED92] gi|89081721|gb|EAR60949.1| ATP-dependent exoDNAse beta subunit [Oceanospirillum sp. MED92] Length = 1179 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 12/139 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-------PSTLLCLTHTKAAAAEMSHRVLE-IIT 87 + A+AG+GKT+ + LRLLL P +L +T T+AA E+ R+ + I+ Sbjct: 20 IEASAGTGKTYTITALYLRLLLGLGQVGDKPLGPDQILVVTFTEAATEELRDRIRQRIVD 79 Query: 88 AW-SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 A S L+D++ + + K +D+++A LL + + TIH FC+ ++++ Sbjct: 80 ARNSFLTDQVSDPFLAAL---KAQVNDIAQAVKLLDQAIRQMDEAAIFTIHGFCQRMLKR 136 Query: 147 FPLEANITSHFAIADEEQS 165 E+ + ++QS Sbjct: 137 HAFESGSLFDTELTQDDQS 155 >gi|294788471|ref|ZP_06753714.1| exodeoxyribonuclease V, beta subunit [Simonsiella muelleri ATCC 29453] gi|294483902|gb|EFG31586.1| exodeoxyribonuclease V, beta subunit [Simonsiella muelleri ATCC 29453] Length = 1206 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 24/151 (15%) Query: 36 VSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRV------------ 82 + A+AG+GKT + RL LL + +T+L +T TKAA AE+ R+ Sbjct: 18 IEASAGTGKTWNIAALFTRLILLEHYRINTILVVTFTKAATAELKTRLRIRLDETLSILN 77 Query: 83 --------LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 +++ H + ++ + IQ + K D ++ + L + + Sbjct: 78 RTPDAANNFDLLKQNCHSNGKLDEFLLNLIQ-QALQKEDQARLQLRLKAAISEFDNAAIY 136 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 TIH FC+ ++Q F + F I +EQS Sbjct: 137 TIHGFCQRVLQDFAFLCQVP--FDIQLDEQS 165 >gi|284920807|emb|CBG33870.1| helicase IV [Escherichia coli 042] Length = 684 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|302874255|ref|YP_003842888.1| UvrD/REP helicase [Clostridium cellulovorans 743B] gi|307689481|ref|ZP_07631927.1| UvrD/REP helicase [Clostridium cellulovorans 743B] gi|302577112|gb|ADL51124.1| UvrD/REP helicase [Clostridium cellulovorans 743B] Length = 753 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ ++ + S +L +T T AA EM R+ I+ Sbjct: 26 AGAGSGKTRVLTYRIAHMIKELGIYSSQILAITFTNKAAQEMRERIRGIV 75 >gi|161486258|ref|NP_753024.2| DNA helicase IV [Escherichia coli CFT073] Length = 684 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|148378683|ref|YP_001253224.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502] gi|148288167|emb|CAL82235.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502] Length = 884 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 53/152 (34%), Gaps = 41/152 (26%) Query: 14 IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D+IS Q A T V A AGSGKT L R + L+ + +LC T T Sbjct: 3 LDVISGLNDAQREAVTTTEGYIRVIAGAGSGKTKALTSRYIYLVHELGISTANILCATFT 62 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +I + GL Sbjct: 63 NKAAREMKKRIRTMIG--------------------------------------DNDTGL 84 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEE 163 + T H FC ++++ N +F + D E Sbjct: 85 -IGTFHGFCRRLLKEDIYTINYPDNFIVMDNE 115 >gi|116071601|ref|ZP_01468869.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. BL107] gi|116065224|gb|EAU70982.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. BL107] Length = 798 Score = 38.5 bits (88), Expect = 0.82, Method: Composition-based stats. Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 22/146 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+ + A P +L +T T AA EM R LE+ Sbjct: 24 VVAGAGSGKTRALTHRIAHLIGEHGADPGQILAVTFTNKAAREMKER-LEL--------- 73 Query: 95 EILSAEITKIQGKKP-NKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQQFPLEA- 151 +L+ + + Q +P + + R L I E L + T HA A M +F ++ Sbjct: 74 -LLAQRLAQSQFGQPWSTLPPVEQRQLRSRIYREITKELWIGTFHALF-ARMLRFDIDKF 131 Query: 152 ------NITSHFAIADEEQSKKLIEE 171 T F+I DE ++ L++E Sbjct: 132 RDPDGLTWTKQFSIYDEADAQSLVKE 157 >gi|325474933|gb|EGC78119.1| UvrD/Rep family ATP-dependent DNA helicase [Treponema denticola F0402] Length = 745 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 A AGSGKT ++ ++ L+ N P +L +T T AA EMS R Sbjct: 29 AGAGSGKTRVITTKIAYLIAEHNIEPERILAVTFTNKAAKEMSER 73 >gi|323947248|gb|EGB43256.1| UvrD/REP helicase [Escherichia coli H120] Length = 684 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|331662375|ref|ZP_08363298.1| helicase IV (75 kDa helicase) [Escherichia coli TA143] gi|331060797|gb|EGI32761.1| helicase IV (75 kDa helicase) [Escherichia coli TA143] Length = 684 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|296121490|ref|YP_003629268.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776] gi|296013830|gb|ADG67069.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776] Length = 680 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 26/46 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 V A AG+GKT ++ R+ L+ A P +L +T T AA EM R Sbjct: 24 VLAGAGTGKTRVITYRMADLIAAGVDPERILSVTFTNKAAREMLDR 69 >gi|237737235|ref|ZP_04567716.1| UvrD/REP helicase [Fusobacterium mortiferum ATCC 9817] gi|229421097|gb|EEO36144.1| UvrD/REP helicase [Fusobacterium mortiferum ATCC 9817] Length = 518 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Query: 14 IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID S EQ A T + V A AGSGKT +V R L+ +L +T T+ Sbjct: 61 IDYSSLLNEEQKKALLSTEGQYLVIAGAGSGKTRTIVYRTAWLIENGVSEEKILMVTFTR 120 Query: 73 AAAAEMSHRVLEIITA 88 A+ EM R+ I+ Sbjct: 121 KASEEMKERLKNILNV 136 >gi|237753157|ref|ZP_04583637.1| ATP-dependent DNA helicase [Helicobacter winghamensis ATCC BAA-430] gi|229375424|gb|EEO25515.1| ATP-dependent DNA helicase [Helicobacter winghamensis ATCC BAA-430] Length = 697 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT + R+ L+ + P L LT T AA EM R L +I Sbjct: 27 AGAGSGKTKTITARLAYLIDVVGIPPGNTLTLTFTNKAAGEMQKRALNMI 76 >gi|300937687|ref|ZP_07152490.1| UvrD/REP helicase [Escherichia coli MS 21-1] gi|300457288|gb|EFK20781.1| UvrD/REP helicase [Escherichia coli MS 21-1] Length = 715 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEAFPEQILLLAFGRKAAEEMDERIRE 294 >gi|258542141|ref|YP_003187574.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01] gi|256633219|dbj|BAH99194.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01] gi|256636278|dbj|BAI02247.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-03] gi|256639331|dbj|BAI05293.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-07] gi|256642387|dbj|BAI08342.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-22] gi|256645442|dbj|BAI11390.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-26] gi|256648495|dbj|BAI14436.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-32] gi|256651548|dbj|BAI17482.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654539|dbj|BAI20466.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-12] Length = 743 Score = 38.5 bits (88), Expect = 0.83, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 41/138 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AG+GKT +L R +LL A P +L +T T AA EM R+ Sbjct: 44 VLAGAGTGKTRVLTTRFAHILLTGRAKPWQILTVTFTNKAAREMRERIG----------- 92 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153 +L +P GL + T HA C ++++ + Sbjct: 93 ----------------------------LLLGSPAEGLWLGTFHALCARMLRRHAEYVGL 124 Query: 154 TSHFAIADEEQSKKLIEE 171 T F I D + +L+++ Sbjct: 125 TQSFTILDTDDQLRLLKQ 142 >gi|261378815|ref|ZP_05983388.1| exodeoxyribonuclease V, beta subunit [Neisseria cinerea ATCC 14685] gi|269144795|gb|EEZ71213.1| exodeoxyribonuclease V, beta subunit [Neisseria cinerea ATCC 14685] Length = 1204 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 26/159 (16%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L + +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 AW--SHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130 + + L D+ LS I + +K D ++R LI L+ G Sbjct: 81 SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDN 139 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + L+ Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178 >gi|224369743|ref|YP_002603907.1| RecB [Desulfobacterium autotrophicum HRM2] gi|223692460|gb|ACN15743.1| RecB [Desulfobacterium autotrophicum HRM2] Length = 1242 Score = 38.5 bits (88), Expect = 0.83, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 26/154 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEII 86 + A+AG+GKT+ + +RL+L + P +L +T T AA E+ R+ + Sbjct: 18 IEASAGTGKTYTIAALYIRLVLGHGKENGFSRPLVPPEILVVTFTNAATQELRERIRARL 77 Query: 87 TAWSHL------SDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIHA 138 T D L QG K + S D+ +LL + TIHA Sbjct: 78 TEACAFFRGRGGGDPFL-------QGLKDDYSPGDLPAMANLLERAALWMDESAIHTIHA 130 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 +C+ ++ Q ++ S F + E L+EEA Sbjct: 131 WCQRMLFQHAFDS--LSLFDLTLEPGDDDLLEEA 162 >gi|331672492|ref|ZP_08373282.1| helicase IV (75 kDa helicase) [Escherichia coli TA280] gi|331070398|gb|EGI41763.1| helicase IV (75 kDa helicase) [Escherichia coli TA280] Length = 715 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294 >gi|319776263|ref|YP_004138751.1| Exodeoxyribonuclease V subunit beta [Haemophilus influenzae F3047] gi|317450854|emb|CBY87078.1| Exodeoxyribonuclease V beta chain [Haemophilus influenzae F3047] Length = 1211 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 30/145 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT+ + LRLLL + +L +T T+ A E+ ++ E IT Sbjct: 20 IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79 Query: 88 AWSHLSDEI--LSAEITKIQGKKPNKS-----------DMSKARHLLITILETPGGLKVQ 134 D I L+A K Q K K+ D+ +A H L + + Sbjct: 80 ------DAIDKLTA-FAKTQDKSAFKNDEFLTALCDNLDIFEAIHRLKLAEQNMDLAAIY 132 Query: 135 TIHAFCEAIMQQFPLEANITSHFAI 159 TIH FC ++ Q+ + I HF + Sbjct: 133 TIHGFCRRMLMQYAFHSGI--HFNL 155 >gi|291459846|ref|ZP_06599236.1| ATP-dependent helicase PcrA [Oribacterium sp. oral taxon 078 str. F0262] gi|291417636|gb|EFE91355.1| ATP-dependent helicase PcrA [Oribacterium sp. oral taxon 078 str. F0262] Length = 834 Score = 38.5 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 30/76 (39%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 DL EQL A T V A AGSGKT +L R+ L+ P +L +T T Sbjct: 53 DLEKILNKEQLSAVKQTEGPLLVLAGAGSGKTRVLTYRIAYLIENCGVAPWHILAITFTN 112 Query: 73 AAAAEMSHRVLEIITA 88 AA EM RV E++ A Sbjct: 113 KAAEEMRKRVDELLCA 128 >gi|218704386|ref|YP_002411905.1| DNA helicase IV [Escherichia coli UMN026] gi|293404262|ref|ZP_06648256.1| helicase IV [Escherichia coli FVEC1412] gi|298380046|ref|ZP_06989651.1| helicase IV [Escherichia coli FVEC1302] gi|218431483|emb|CAR12361.1| DNA helicase IV [Escherichia coli UMN026] gi|291428848|gb|EFF01873.1| helicase IV [Escherichia coli FVEC1412] gi|298279744|gb|EFI21252.1| helicase IV [Escherichia coli FVEC1302] Length = 684 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|167627248|ref|YP_001677748.1| DNA helicase II [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597249|gb|ABZ87247.1| DNA helicase II [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 742 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 39/145 (26%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 R++ + A AGSGKT +L R+ L +L +T T AA E+ HRV +++ + Sbjct: 23 RNSLILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTNKAAKEIQHRVEKMLGIST 82 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 G+ + T H ++++ E Sbjct: 83 F--------------------------------------GMWIGTFHGIAHRLLRKHAHE 104 Query: 151 ANITSHFAIADEEQSKKLIEEAKKS 175 + +F I D+++ +LI++ KS Sbjct: 105 LGLDKNFRILDQDEQAQLIKKVIKS 129 >gi|145630792|ref|ZP_01786570.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae R3021] gi|144983674|gb|EDJ91134.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae R3021] Length = 1211 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 26/143 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT+ + LRLLL + +L +T T+ A E+ ++ E IT Sbjct: 20 IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79 Query: 88 AWSHLSDEILSAEITKIQGKKPNKS-----------DMSKARHLLITILETPGGLKVQTI 136 + + L+A K Q K K+ D+ +A H L + + TI Sbjct: 80 D----AIDKLTA-FAKTQDKSAFKNDEFLTALCHDLDIFEAIHRLKLAEQNMDLAAIYTI 134 Query: 137 HAFCEAIMQQFPLEANITSHFAI 159 H FC ++ Q+ + I HF + Sbjct: 135 HGFCRRMLMQYAFHSGI--HFNL 155 >gi|329113313|ref|ZP_08242094.1| Putative DNA helicase II-like protein [Acetobacter pomorum DM001] gi|326697138|gb|EGE48798.1| Putative DNA helicase II-like protein [Acetobacter pomorum DM001] Length = 783 Score = 38.5 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 41/138 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AG+GKT +L R +LL A P +L +T T AA EM R+ Sbjct: 84 VLAGAGTGKTRVLTTRFAHILLTGRAKPWQILTVTFTNKAAREMHERIG----------- 132 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQQFPLEANI 153 +L +P GL + T HA C ++++ + Sbjct: 133 ----------------------------LLLGSPAEGLWLGTFHALCARMLRRHAEYVGL 164 Query: 154 TSHFAIADEEQSKKLIEE 171 T F I D + +L+++ Sbjct: 165 TQSFTILDTDDQLRLLKQ 182 >gi|319775408|ref|YP_004137896.1| DNA helicase and single-stranded DNA-dependent ATPase [Haemophilus influenzae F3047] gi|317449999|emb|CBY86212.1| DNA helicase and single-stranded DNA-dependent ATPase [Haemophilus influenzae F3047] Length = 670 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T S V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGSCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67 >gi|303231325|ref|ZP_07318060.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6] gi|302514005|gb|EFL56012.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6] Length = 861 Score = 38.5 bits (88), Expect = 0.84, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 76/190 (40%), Gaps = 44/190 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 +Q + + R+ + A+AG+GKT+ L RV ++ + +LC+T T AA EM R Sbjct: 7 QQRVIDELDRNILLLASAGTGKTNTLAYRVAHIIESGRCEAHQILCMTFTNKAAQEMKSR 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + E L + K +++ T H+FC Sbjct: 67 I------------EFLVGQPAK--------------------------AVEISTFHSFCF 88 Query: 142 AIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 ++QQ + ++ + I DEE K+L K + + + + K + + E + Sbjct: 89 YVLQQEGKRDESLYTDVTIFDEEDCKELYLPYKPRNMRDMNFASLISMVKEYRSVYEFYS 148 Query: 201 DEDIETLISD 210 E+LI D Sbjct: 149 ----ESLIDD 154 >gi|261251138|ref|ZP_05943712.1| DNA helicase IV [Vibrio orientalis CIP 102891] gi|260938011|gb|EEX93999.1| DNA helicase IV [Vibrio orientalis CIP 102891] Length = 688 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L RV LL ++ A S +L L + AA+EMS R+ + I + Sbjct: 219 AGAGSGKTSVLTARVAYLLQSHLAQASDILMLAFGRDAASEMSQRLNDKIGS 270 >gi|218700518|ref|YP_002408147.1| DNA helicase IV [Escherichia coli IAI39] gi|218370504|emb|CAR18311.1| DNA helicase IV [Escherichia coli IAI39] Length = 684 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|189501505|ref|YP_001957222.1| UvrD/REP helicase [Candidatus Amoebophilus asiaticus 5a2] gi|189496946|gb|ACE05493.1| UvrD/REP helicase [Candidatus Amoebophilus asiaticus 5a2] Length = 757 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AG+GKT +L R+ L+ P +L LT T AA EM R+ ++I Sbjct: 27 AGAGAGKTKVLTTRIAYLIQEKKVDPFKILALTFTNKAANEMKKRIEQVI 76 >gi|145634939|ref|ZP_01790646.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittAA] gi|145267805|gb|EDK07802.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittAA] Length = 1202 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 30/145 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT+ + LRLLL + +L +T T+ A E+ ++ E IT Sbjct: 20 IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79 Query: 88 AWSHLSDEI--LSAEITKIQGKKPNKS-----------DMSKARHLLITILETPGGLKVQ 134 D I L+A K Q K K+ D+ +A H L + + Sbjct: 80 ------DAINKLTA-FAKTQDKSAFKNDEFLTALCHDLDIFEAIHRLKLAEQNMDLAAIY 132 Query: 135 TIHAFCEAIMQQFPLEANITSHFAI 159 TIH FC ++ Q+ + I HF + Sbjct: 133 TIHGFCRRMLMQYAFHSGI--HFNL 155 >gi|145637780|ref|ZP_01793430.1| ATP-dependent DNA helicase [Haemophilus influenzae PittHH] gi|145269025|gb|EDK08978.1| ATP-dependent DNA helicase [Haemophilus influenzae PittHH] Length = 671 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T S V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGSCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67 >gi|145633194|ref|ZP_01788925.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 3655] gi|144986040|gb|EDJ92630.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 3655] Length = 850 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 30/145 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT+ + LRLLL + +L +T T+ A E+ ++ E IT Sbjct: 20 IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79 Query: 88 AWSHLSDEI--LSAEITKIQGKKPNKS-----------DMSKARHLLITILETPGGLKVQ 134 D I L+A K Q K K+ D+ +A H L + + Sbjct: 80 ------DAINKLTA-FAKTQDKSAFKNDEFLTALCHDLDIFEAIHRLKLAEQNMDLAAIY 132 Query: 135 TIHAFCEAIMQQFPLEANITSHFAI 159 TIH FC ++ Q+ + I HF + Sbjct: 133 TIHGFCRRMLMQYAFHSGI--HFNL 155 >gi|221638499|ref|YP_002524761.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides KD131] gi|221159280|gb|ACM00260.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides KD131] Length = 786 Score = 38.5 bits (88), Expect = 0.85, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AG+GKT L R++ LL A P+ +L +T T AA EM RV ++ Sbjct: 54 AGAGTGKTKALTARIVHLLDSGKARPNEILAVTFTNKAAREMKDRVARLL 103 >gi|78211730|ref|YP_380509.1| ATP-dependent DNA helicase Rep [Synechococcus sp. CC9605] gi|78196189|gb|ABB33954.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9605] Length = 796 Score = 38.5 bits (88), Expect = 0.85, Method: Composition-based stats. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 2/54 (3%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT L R+ L+ + A P+ +L +T T AA EM R LE++ A Sbjct: 24 VVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFTNKAAREMKER-LEVLLA 76 >gi|319897107|ref|YP_004135302.1| exodeoxyribonuclease v beta chain [Haemophilus influenzae F3031] gi|317432611|emb|CBY80972.1| Exodeoxyribonuclease V beta chain [Haemophilus influenzae F3031] Length = 1201 Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 30/145 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT+ + LRLLL + +L +T T+ A E+ ++ E IT Sbjct: 20 IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79 Query: 88 AWSHLSDEI--LSAEITKIQGKKPNKS-----------DMSKARHLLITILETPGGLKVQ 134 D I L+A K Q K K+ D+ +A H L + + Sbjct: 80 ------DAINKLTA-FAKTQDKSAFKNDEFLTALCDNLDIFEAIHRLKLAEQNMDLAAIY 132 Query: 135 TIHAFCEAIMQQFPLEANITSHFAI 159 TIH FC ++ Q+ + I HF + Sbjct: 133 TIHGFCRRMLMQYAFHSGI--HFNL 155 >gi|225573671|ref|ZP_03782426.1| hypothetical protein RUMHYD_01867 [Blautia hydrogenotrophica DSM 10507] gi|225038964|gb|EEG49210.1| hypothetical protein RUMHYD_01867 [Blautia hydrogenotrophica DSM 10507] Length = 608 Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEI 85 V A GSGKT ++V+R ++ + P T +L +T +KAAA EM R L + Sbjct: 20 VLAGPGSGKTSVIVERTSYMIHHHQVPETGILVVTFSKAAAREMKERFLRL 70 >gi|210608461|ref|ZP_03287837.1| hypothetical protein CLONEX_00016 [Clostridium nexile DSM 1787] gi|210153037|gb|EEA84043.1| hypothetical protein CLONEX_00016 [Clostridium nexile DSM 1787] Length = 741 Score = 38.5 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ +P +L +T T AA EM RV +I+ Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIDEKGVNPWNILAITFTNKAAGEMRERVDQIV 75 >gi|167631048|ref|YP_001681547.1| ATP-dependent DNA helicase pcra [Heliobacterium modesticaldum Ice1] gi|167593788|gb|ABZ85536.1| ATP-dependent DNA helicase pcra [Heliobacterium modesticaldum Ice1] Length = 731 Score = 38.5 bits (88), Expect = 0.86, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 A AGSGKT +L R+ L+ P +L +T T AAAEM R+ +I +H Sbjct: 28 AGAGSGKTRVLTHRIGHLIEQCRVSPFHILAITFTNKAAAEMRERLGRLIGPRAH 82 >gi|83282597|ref|XP_729839.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23488804|gb|EAA21404.1| hypothetical protein [Plasmodium yoelii yoelii] Length = 215 Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 12/127 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL-- 92 + A GSGKT L R+++ ++ +++C+T T +A ++ ++++ I L Sbjct: 54 CIIACPGSGKTSTLTARIIKSIIE--RKKSIVCITFTNYSAKDLKEKIIKKINCLIDLCT 111 Query: 93 SDEILSAEITK---IQGKK--PNKSDMSKARHL-LITILETPGGLKVQTIHAFCEAIMQQ 146 EI + + I G K K D++K + +L+T + + TIH+FC I+ + Sbjct: 112 GKEIQNKLFNRNKNIGGNKIRNKKYDINKTMYKNKFKVLDTT--IFIGTIHSFCRYILLK 169 Query: 147 FPLEANI 153 + E I Sbjct: 170 YKGEFKI 176 >gi|323190776|gb|EFZ76045.1| helicase IV [Escherichia coli RN587/1] Length = 684 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|301023091|ref|ZP_07186898.1| UvrD/REP helicase [Escherichia coli MS 69-1] gi|300397212|gb|EFJ80750.1| UvrD/REP helicase [Escherichia coli MS 69-1] Length = 715 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294 >gi|300896343|ref|ZP_07114885.1| UvrD/REP helicase [Escherichia coli MS 198-1] gi|300359754|gb|EFJ75624.1| UvrD/REP helicase [Escherichia coli MS 198-1] Length = 715 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294 >gi|300313605|ref|YP_003777697.1| ATP-dependent DNA helicase rep [Herbaspirillum seropedicae SmR1] gi|300076390|gb|ADJ65789.1| ATP-dependent DNA helicase rep protein [Herbaspirillum seropedicae SmR1] Length = 690 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 37/147 (25%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ L+ + S + LT T AA EM R+ +++ Sbjct: 25 VLAGAGSGKTRVITQKIAHLIENCGYESRNIAALTFTNKAALEMQERIAKLL-------- 76 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 D +A+HL ++ T H+ I++Q + Sbjct: 77 -----------------KDPKQAKHLTVS-----------TFHSLGVKILRQESQHLGLK 108 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIM 181 F+I D + L++E +T +I+ Sbjct: 109 DRFSIMDSDDCFSLVQELAVTTDKAII 135 >gi|293409341|ref|ZP_06652917.1| helD [Escherichia coli B354] gi|291469809|gb|EFF12293.1| helD [Escherichia coli B354] Length = 684 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|42527836|ref|NP_972934.1| ATP-dependent DNA helicase UvrD [Treponema denticola ATCC 35405] gi|41818664|gb|AAS12853.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema denticola ATCC 35405] Length = 745 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 A AGSGKT ++ ++ L+ N P +L +T T AA EMS R Sbjct: 29 AGAGSGKTRVITTKIAYLIAEHNIEPERILAVTFTNKAAKEMSER 73 >gi|326334227|ref|ZP_08200450.1| UvrD/REP helicase [Nocardioidaceae bacterium Broad-1] gi|325948018|gb|EGD40135.1| UvrD/REP helicase [Nocardioidaceae bacterium Broad-1] Length = 1074 Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 2/64 (3%) Query: 23 EQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 EQ A + P A V A AGSGKT ++ RV+ L+ P +L LT T A AE++ Sbjct: 25 EQFRAITAPLEPAVVIAGAGSGKTAVMAARVVWLVATGRVLPGEVLGLTFTTKATAELAT 84 Query: 81 RVLE 84 R+ E Sbjct: 85 RIRE 88 >gi|270292732|ref|ZP_06198943.1| exonuclease RexA [Streptococcus sp. M143] gi|270278711|gb|EFA24557.1| exonuclease RexA [Streptococcus sp. M143] Length = 1217 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 20/134 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++ +R+L L L T T AA E+ R+ + I+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEIRQLFISTFTVKAATELKERLEKKIS-------- 96 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +IQ SD+ +HL + + P + T+ +F + + + +I Sbjct: 97 ------QQIQ----ESSDVDLKQHLGRQLADLPNA-AIGTMDSFTQKFLGKHGYLIDIAP 145 Query: 156 HFAIADEEQSKKLI 169 +F I E S++LI Sbjct: 146 NFRILQNE-SEQLI 158 >gi|239929059|ref|ZP_04686012.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672] Length = 374 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 35/154 (22%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + A AGSGKT ++ RV+ L+ P +L LT T AA E++ RV + Sbjct: 30 PPAPQVIVAGAGSGKTTVMAARVVWLVGTGRVAPEQVLGLTFTNKAAGELAERVRKA--- 86 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 ++ A +T P+ PG + T HAF ++ Sbjct: 87 -------LIKAGVTDPDVIDPDNP---------------PGEPVISTYHAFAGRLL---- 120 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 T H E S +L+ +A + LA+ +L Sbjct: 121 -----TDHGLRIGLEPSSRLLADATRYQLAARVL 149 >gi|254788455|ref|YP_003075884.1| DNA-dependent helicase II [Teredinibacter turnerae T7901] gi|237683747|gb|ACR11011.1| DNA helicase II [Teredinibacter turnerae T7901] Length = 728 Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 P + V A AGSGKT +LV R+ L+ + P ++ +T T AA EM R+ +I Sbjct: 21 PLGNQLVLAGAGSGKTRVLVHRIAWLMEQQSVSPHQVMAVTFTNKAAREMRERLTHLI 78 >gi|226330641|ref|ZP_03806159.1| hypothetical protein PROPEN_04561 [Proteus penneri ATCC 35198] gi|225201436|gb|EEG83790.1| hypothetical protein PROPEN_04561 [Proteus penneri ATCC 35198] Length = 333 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +LV R LL A P +L L + AA EM+ R+ Sbjct: 120 VLAGAGSGKTSVLVARAGWLLRRQLAQPDQILLLAFGRKAAQEMNERL 167 >gi|186681485|ref|YP_001864681.1| ATP-dependent DNA helicase PcrA [Nostoc punctiforme PCC 73102] gi|186463937|gb|ACC79738.1| ATP-dependent DNA helicase PcrA [Nostoc punctiforme PCC 73102] Length = 773 Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Query: 11 SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + TID +S Q A + V A AGSGKT L R+ L+L + P +L + Sbjct: 2 TTTIDFLSHLNPSQRQAVEHYCGPLLVVAGAGSGKTRALTYRIANLILKHRVDPENILAV 61 Query: 69 THTKAAAAEMSHRV 82 T T AA EM R+ Sbjct: 62 TFTNKAAREMKERI 75 >gi|170769313|ref|ZP_02903766.1| helicase IV [Escherichia albertii TW07627] gi|170121965|gb|EDS90896.1| helicase IV [Escherichia albertii TW07627] Length = 714 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 244 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDDRIRE 293 >gi|110641152|ref|YP_668882.1| DNA helicase IV [Escherichia coli 536] gi|300982944|ref|ZP_07176378.1| UvrD/REP helicase [Escherichia coli MS 200-1] gi|110342744|gb|ABG68981.1| helicase IV [Escherichia coli 536] gi|300307033|gb|EFJ61553.1| UvrD/REP helicase [Escherichia coli MS 200-1] gi|324012915|gb|EGB82134.1| UvrD/REP helicase [Escherichia coli MS 60-1] Length = 715 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 294 >gi|120402221|ref|YP_952050.1| exodeoxyribonuclease V subunit beta [Mycobacterium vanbaalenii PYR-1] gi|119955039|gb|ABM12044.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Mycobacterium vanbaalenii PYR-1] Length = 1097 Score = 38.5 bits (88), Expect = 0.87, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 15/135 (11%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV----LE 84 P + + A+AG+GKT L V R + A +L +T +AA+ E+ RV L+ Sbjct: 13 PRTTTVLEASAGTGKTFALAGLVTRYVAEGVATLDQMLLITFGRAASQELRERVRAQILD 72 Query: 85 IITAW---SHLSD-EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 + A+ SH +D EI++ +T G ++++ R L L + T H FC Sbjct: 73 ALRAFDDPSHAADNEIVAHLLTGSHG------ELTERRQRLRDALAGFDAATIATTHQFC 126 Query: 141 EAIMQQFPLEANITS 155 + +++ + + S Sbjct: 127 QLVLRSLGVAGDTDS 141 >gi|46578573|ref|YP_009381.1| ATP-dependent DNA helicase UvrD [Desulfovibrio vulgaris str. Hildenborough] gi|46447984|gb|AAS94640.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio vulgaris str. Hildenborough] gi|311232497|gb|ADP85351.1| UvrD/REP helicase [Desulfovibrio vulgaris RCH1] Length = 719 Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 29/51 (56%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +V R+ LL S++L LT T+ AA EM R ++ Sbjct: 25 VIAGAGSGKTRTVVYRLANLLERGVPASSILLLTFTRKAANEMLQRASRLL 75 >gi|297157455|gb|ADI07167.1| ATP-dependent DNA helicase [Streptomyces bingchenggensis BCW-1] Length = 1221 Score = 38.5 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 P + A AGSGKT ++ RV+ L+ P +L LT T AA E+S RV Sbjct: 30 PPSPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAAGELSERV 83 >gi|283850979|ref|ZP_06368264.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B] gi|283573625|gb|EFC21600.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B] Length = 1080 Score = 38.5 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 30/57 (52%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 R V A G+GKTH L+ ++ LL A +L +T T+ AA E+ R+ I A Sbjct: 487 RHLLVVAGPGTGKTHTLLAKIRSLLEAGVPADKILAVTFTRRAAGELRDRLARDIPA 543 >gi|163784551|ref|ZP_02179406.1| First subunit of major exonuclease [Hydrogenivirga sp. 128-5-R1-1] gi|159880179|gb|EDP73828.1| First subunit of major exonuclease [Hydrogenivirga sp. 128-5-R1-1] Length = 423 Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 32/172 (18%) Query: 38 ANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AG+GKT+ LV +VL ++ + +L LT T+ AAAE+ ++ E I Sbjct: 8 ASAGTGKTYSLVSQVLDKIRKEDVSLRQILILTFTEKAAAELKEKISERI---------- 57 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 K K PN S K + L +L G + T H+ ++++P + I Sbjct: 58 ------KEALKDPNVSKKEKIK-LHRQLLFIDSGY-IGTFHSVFFRFLKKYPHVSGIDKS 109 Query: 157 FAIAD-----------EEQSKKLIEEAKKS--TLASIMLDNNEELKKAFYEI 195 F++ E+ +K EE K + + DN ++LKK F ++ Sbjct: 110 FSVLSSQLDYILGLFFEKWIEKDFEENPKDWEKIITFFTDNEKKLKKIFLQL 161 >gi|77462643|ref|YP_352147.1| ATP-dependent DNA helicase Rep [Rhodobacter sphaeroides 2.4.1] gi|77387061|gb|ABA78246.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides 2.4.1] Length = 783 Score = 38.5 bits (88), Expect = 0.88, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AG+GKT L R++ LL A P+ +L +T T AA EM RV ++ Sbjct: 51 AGAGTGKTKALTARIVHLLDSGKARPNEILAVTFTNKAAREMKDRVARLL 100 >gi|284047984|ref|YP_003398323.1| ATP-dependent DNA helicase PcrA [Acidaminococcus fermentans DSM 20731] gi|283952205|gb|ADB47008.1| ATP-dependent DNA helicase PcrA [Acidaminococcus fermentans DSM 20731] Length = 750 Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 25/47 (53%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT L ++ LL P +L +T T AA EM RV Sbjct: 25 ILAGAGSGKTKALTTKIAYLLEKGVKPWNILAITFTNKAAKEMRQRV 71 >gi|254293049|ref|YP_003059072.1| UvrD/REP helicase [Hirschia baltica ATCC 49814] gi|254041580|gb|ACT58375.1| UvrD/REP helicase [Hirschia baltica ATCC 49814] Length = 1134 Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 31/60 (51%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 + + AS + + A G+GKT LV RV LL P +L LT + AA EM+ R+ Sbjct: 201 QAVAASHRGNAYLLEAGPGTGKTQTLVARVDALLEEGVDPRRILLLTFSNKAAGEMADRI 260 >gi|167587569|ref|ZP_02379957.1| exodeoxyribonuclease V, beta subunit [Burkholderia ubonensis Bu] Length = 898 Score = 38.5 bits (88), Expect = 0.89, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 7/118 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 26 IEASAGTGKTWNICALYVRLLLEKDLGADQILVVTFTKAATAELHERIRGRLAQLAHALD 85 Query: 95 ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + A + D A + L + TIHAFC+ +Q+ Sbjct: 86 TGDDGGDPFIARLVDTTLGDGGVLDPETAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143 >gi|301170069|emb|CBW29673.1| exonuclease V (RecBCD complex), beta subunit [Haemophilus influenzae 10810] Length = 1211 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 30/145 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT+ + LRLLL + +L +T T+ A E+ ++ E IT Sbjct: 20 IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79 Query: 88 AWSHLSDEI--LSAEITKIQGKKPNKS-----------DMSKARHLLITILETPGGLKVQ 134 D I L+A K Q K K+ D+ +A H L + + Sbjct: 80 ------DAINKLTA-FAKTQDKSAFKNDEFLTALCHDLDIFEAIHRLKLAEQNMDLAAIY 132 Query: 135 TIHAFCEAIMQQFPLEANITSHFAI 159 TIH FC ++ Q+ + I HF + Sbjct: 133 TIHGFCRRMLMQYAFHSGI--HFNL 155 >gi|241667801|ref|ZP_04755379.1| DNA helicase II [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876345|ref|ZP_05249055.1| DNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842366|gb|EET20780.1| DNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 742 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 31/145 (21%), Positives = 57/145 (39%), Gaps = 39/145 (26%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 R++ + A AGSGKT +L R+ L +L +T T AA E+ HRV +++ + Sbjct: 23 RNSLILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTNKAAKEIQHRVEKMLGIST 82 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 G+ + T H ++++ E Sbjct: 83 F--------------------------------------GMWIGTFHGIAHRLLRKHAHE 104 Query: 151 ANITSHFAIADEEQSKKLIEEAKKS 175 + +F I D+++ +LI++ KS Sbjct: 105 LGLDKNFRILDQDEQAQLIKKVIKS 129 >gi|15673102|ref|NP_267276.1| ATP-dependent helicase PcrA [Lactococcus lactis subsp. lactis Il1403] gi|12724080|gb|AAK05218.1|AE006344_7 ATP-dependent helicase PcrA [Lactococcus lactis subsp. lactis Il1403] gi|326406669|gb|ADZ63740.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Lactococcus lactis subsp. lactis CV56] Length = 758 Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEI 85 + A AGSGKT +L R+ L+ +P +L +T T AA EM R L + Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAKEMRERALSL 75 >gi|319649937|ref|ZP_08004087.1| YjcD protein [Bacillus sp. 2_A_57_CT2] gi|317398375|gb|EFV79063.1| YjcD protein [Bacillus sp. 2_A_57_CT2] Length = 772 Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R +L + P +++ +T T AAAEM R+ + S Sbjct: 161 VLAGAGSGKTRVLTTRTAFMLREKDIDPKSIMLVTFTAKAAAEMKERLTQYPGMDSRKVR 220 Query: 95 EILSA 99 +I+S Sbjct: 221 QIVSG 225 >gi|261880622|ref|ZP_06007049.1| ATP-dependent DNA helicase [Prevotella bergensis DSM 17361] gi|270332663|gb|EFA43449.1| ATP-dependent DNA helicase [Prevotella bergensis DSM 17361] Length = 847 Score = 38.5 bits (88), Expect = 0.90, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 38/141 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AG+GKT +L ++ LL + P +L LT T AA EM R+ +++ Sbjct: 28 VIAGAGAGKTRVLTYKIAWLLEHHGMKPWNILALTFTNKAAKEMKQRIGQLV-------- 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 M +AR+ L++ T H+ I++ Sbjct: 80 ------------------GMERARY-----------LQMGTFHSVFAKILRMEARNVGYG 110 Query: 155 SHFAIADEEQSKKLIEEAKKS 175 S F I DE S+ LI+ K+ Sbjct: 111 SDFTIYDEMDSRSLIKNIVKA 131 >gi|125624253|ref|YP_001032736.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris MG1363] gi|124493061|emb|CAL98025.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris MG1363] gi|300071034|gb|ADJ60434.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris NZ9000] Length = 758 Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEI 85 + A AGSGKT +L R+ L+ +P +L +T T AA EM R L + Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAKEMRERALSL 75 >gi|299065225|emb|CBJ36391.1| ATP-dependent DNA helicase [Ralstonia solanacearum CMR15] Length = 680 Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT ++ Q++ L+L P + +T T AA EM RV +++ Sbjct: 3 AGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDG 54 >gi|281491616|ref|YP_003353596.1| ATP-dependent DNA helicase II [Lactococcus lactis subsp. lactis KF147] gi|281375334|gb|ADA64847.1| ATP-dependent DNA helicase II [Lactococcus lactis subsp. lactis KF147] Length = 758 Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEI 85 + A AGSGKT +L R+ L+ +P +L +T T AA EM R L + Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAKEMRERALSL 75 >gi|227874195|ref|ZP_03992397.1| ATP-dependent DNA helicase PcrA [Oribacterium sinus F0268] gi|227839950|gb|EEJ50378.1| ATP-dependent DNA helicase PcrA [Oribacterium sinus F0268] Length = 793 Score = 38.5 bits (88), Expect = 0.91, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+L P +L +T T AA EM RV +++ Sbjct: 24 ILAGAGSGKTRVLTHRIAYLILEKGISPYQILAITFTNKAAQEMRDRVNQLL 75 >gi|301060341|ref|ZP_07201204.1| exodeoxyribonuclease V, beta subunit [delta proteobacterium NaphS2] gi|300445537|gb|EFK09439.1| exodeoxyribonuclease V, beta subunit [delta proteobacterium NaphS2] Length = 1223 Score = 38.1 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 14/148 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A+AG+GKT+ + LRL+L + P +L +T T AA E+ HR+ + + Sbjct: 18 IEASAGTGKTYTIGALYLRLVLGHGGKNGFHRALMPPEILVVTFTNAATEELRHRIRQKL 77 Query: 87 TAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + + + + G P S KAR L + L + TIH++ ++ Sbjct: 78 VEAAGYFNGTCKGDGFLEGLAGAFPKASWPEKARVLEQSSLWMDEA-AIHTIHSWSSRML 136 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEA 172 +Q +A ++++ L+EEA Sbjct: 137 RQHAFLCGSLFDLELAPDDEN--LLEEA 162 >gi|282882802|ref|ZP_06291407.1| ATP-dependent DNA helicase PcrA [Peptoniphilus lacrimalis 315-B] gi|281297213|gb|EFA89704.1| ATP-dependent DNA helicase PcrA [Peptoniphilus lacrimalis 315-B] Length = 720 Score = 38.1 bits (87), Expect = 0.92, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 4/74 (5%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72 ID ++ + E LL ++ + A AGSGKT ++ ++ L+ N PS +L +T T Sbjct: 3 IDSLNDKQKEALLYNEG--PLLILAGAGSGKTKVVTSKIA-YLIENEVPSWRILAITFTN 59 Query: 73 AAAAEMSHRVLEII 86 AA EM RV +I Sbjct: 60 KAAREMRERVAMLI 73 >gi|238795895|ref|ZP_04639408.1| Helicase IV (75 kDa helicase) [Yersinia mollaretii ATCC 43969] gi|238720358|gb|EEQ12161.1| Helicase IV (75 kDa helicase) [Yersinia mollaretii ATCC 43969] Length = 684 Score = 38.1 bits (87), Expect = 0.92, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +LV R LL N A P +L L + AA EM+ R+ Sbjct: 214 VLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNSRI 261 >gi|118581858|ref|YP_903108.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379] gi|118504568|gb|ABL01051.1| ATP-dependent DNA helicase PcrA [Pelobacter propionicus DSM 2379] Length = 762 Score = 38.1 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT ++ R+ L+ + P +L +T T AA EMS RV ++ Sbjct: 24 ILAGAGSGKTRVITHRIAHLIHNHGVRPWNILAVTFTNKAAREMSERVSRLL 75 >gi|307703404|ref|ZP_07640346.1| exonuclease RexA [Streptococcus oralis ATCC 35037] gi|307622811|gb|EFO01806.1| exonuclease RexA [Streptococcus oralis ATCC 35037] Length = 139 Score = 38.1 bits (87), Expect = 0.93, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 VSA+AGSGKT ++ +R+L L S L T T AA E+ R+ Sbjct: 45 VSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELKERL 91 >gi|302558544|ref|ZP_07310886.1| UvrD/Rep family helicase [Streptomyces griseoflavus Tu4000] gi|302476162|gb|EFL39255.1| UvrD/Rep family helicase [Streptomyces griseoflavus Tu4000] Length = 1072 Score = 38.1 bits (87), Expect = 0.93, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 35/167 (20%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T AA Sbjct: 17 IPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 76 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E++ RV + ++ A +T P+ PG + T Sbjct: 77 GELAERVRK----------ALVRAGVTDPDAIDPDNP---------------PGEPVIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 HAF ++ L + E + +L+ +A + LA+ +L Sbjct: 112 YHAFAGRLLTDHGLRVGL---------EPTSRLLADATRYQLAARVL 149 >gi|268323490|emb|CBH37078.1| putative ATP-dependent DNA helicase [uncultured archaeon] gi|268326506|emb|CBH40094.1| putative ATP-dependent DNA helicase [uncultured archaeon] Length = 615 Score = 38.1 bits (87), Expect = 0.93, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A+AGSGKT +L +RV R LL + +L LT T A E+ R+ +I Sbjct: 24 VKASAGSGKTRVLTERV-RYLLGKTN-KKVLALTFTNKAGEEIKERLSDI 71 >gi|156036288|ref|XP_001586255.1| hypothetical protein SS1G_12833 [Sclerotinia sclerotiorum 1980] gi|154698238|gb|EDN97976.1| hypothetical protein SS1G_12833 [Sclerotinia sclerotiorum 1980 UF-70] Length = 999 Score = 38.1 bits (87), Expect = 0.93, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 13 TID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 TID LI S++ S + + A GSGKTH L R LL P ++ T Sbjct: 2 TIDNLLIGLNASQRAAVSSQADTLAILAGPGSGKTHTLTSRTAWLLHQGLQPWNIIVATF 61 Query: 71 TKAAAAEMSHRVLEII 86 T AA EM R+ ++I Sbjct: 62 TVKAAREMKERIGKLI 77 >gi|115351152|ref|YP_772991.1| exodeoxyribonuclease V subunit beta [Burkholderia ambifaria AMMD] gi|115281140|gb|ABI86657.1| exodeoxyribonuclease V, beta subunit [Burkholderia ambifaria AMMD] Length = 1234 Score = 38.1 bits (87), Expect = 0.93, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 7/118 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 26 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 85 Query: 95 ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + + + D A + L + TIHAFC+ +Q+ Sbjct: 86 TGDDGGDPFVERLLETTLGDAGTLDPETAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143 >gi|68171270|ref|ZP_00544672.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa] gi|88657941|ref|YP_507655.1| UvrD/Rep family helicase [Ehrlichia chaffeensis str. Arkansas] gi|67999317|gb|EAM85964.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa] gi|88599398|gb|ABD44867.1| helicase, UvrD/Rep family [Ehrlichia chaffeensis str. Arkansas] Length = 639 Score = 38.1 bits (87), Expect = 0.93, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A AG+GKT + R+ ++ N A PS +L +T T AA EM R+ E+ ++ Sbjct: 27 AGAGTGKTRTITSRIAYIINNNFALPSQILAVTFTNKAANEMLSRISELTPVYN 80 >gi|157375075|ref|YP_001473675.1| exodeoxyribonuclease V, beta subunit [Shewanella sediminis HAW-EB3] gi|157317449|gb|ABV36547.1| exodeoxyribonuclease V, beta subunit [Shewanella sediminis HAW-EB3] Length = 1251 Score = 38.1 bits (87), Expect = 0.94, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 28/149 (18%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC-----LTHTKAAAAEMSHRVLEIIT 87 S + A+AG+GKT + +RLLL + L C +T T AA E+ R+ I Sbjct: 42 SRLIEASAGTGKTFTIAGLYVRLLLGHEIEKPLSCEQILVVTFTNAATGELRDRIRRKIQ 101 Query: 88 -AWSHL----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK------VQTI 136 A+ +D+ L + ++ + RHL + L+ LK + TI Sbjct: 102 LAYRRFIGLETDDDLIESLYRLTPE--------SERHLALKRLDL--ALKSLDEASIFTI 151 Query: 137 HAFCEAIMQQFPLEANI--TSHFAIADEE 163 H FC+ I+ E+++ S F + D E Sbjct: 152 HGFCQRILADMAFESSLLFESEFTLDDSE 180 >gi|328462071|gb|EGF34244.1| ATP-dependent helicase [Lactobacillus helveticus MTCC 5463] Length = 745 Score = 38.1 bits (87), Expect = 0.95, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 V A AGSGKT +L +R+ L+ N P +L +T T AA EM R Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAANEMRER 73 >gi|317488584|ref|ZP_07947129.1| ATP-dependent DNA helicase PcrA [Eggerthella sp. 1_3_56FAA] gi|325832008|ref|ZP_08165105.1| putative ATP-dependent DNA helicase PcrA [Eggerthella sp. HGA1] gi|316912326|gb|EFV33890.1| ATP-dependent DNA helicase PcrA [Eggerthella sp. 1_3_56FAA] gi|325486329|gb|EGC88781.1| putative ATP-dependent DNA helicase PcrA [Eggerthella sp. HGA1] Length = 813 Score = 38.1 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 39/137 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ + P +L +T T AAAEM R+ ++ Sbjct: 25 VLAGAGSGKTRVLTYRIANLIENHDVAPWEILAITFTNKAAAEMRERLNGLVG------- 77 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + R G+ V T H+ C +++ + T Sbjct: 78 --------------------PRCR-----------GMWVSTFHSMCVRMLRSDAEKLGFT 106 Query: 155 SHFAIADEEQSKKLIEE 171 +F I D + K+L +E Sbjct: 107 RNFTIYDTDDQKRLYKE 123 >gi|260102795|ref|ZP_05753032.1| ATP-dependent DNA helicase PcrA [Lactobacillus helveticus DSM 20075] gi|260083399|gb|EEW67519.1| ATP-dependent DNA helicase PcrA [Lactobacillus helveticus DSM 20075] Length = 748 Score = 38.1 bits (87), Expect = 0.95, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 V A AGSGKT +L +R+ L+ N P +L +T T AA EM R Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAANEMRER 73 >gi|229847480|ref|ZP_04467577.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 7P49H1] gi|229809621|gb|EEP45348.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 7P49H1] Length = 1211 Score = 38.1 bits (87), Expect = 0.95, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 32/146 (21%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT+ + LRLLL + +L +T T+ A E+ ++ E IT Sbjct: 20 IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79 Query: 88 -------AWSHL-------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 A++ +DE L+A + D+ +A H L + + Sbjct: 80 DAIDKLIAFAETQDKSAFKNDEFLTALCDNL--------DIFEAIHRLKLAEQNMDLAAI 131 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAI 159 TIH FC ++ Q+ + I HF + Sbjct: 132 YTIHGFCRRMLMQYAFHSGI--HFNL 155 >gi|227501454|ref|ZP_03931503.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725] gi|227077479|gb|EEI15442.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725] Length = 795 Score = 38.1 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 2/66 (3%) Query: 23 EQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSH 80 +QL A T R + A AGSGKT +L +R+ L+ +P L +T T AAAEM Sbjct: 4 QQLEAVTHTGRPLLIVAGAGSGKTAVLTRRIAYLMRHRGVNPWESLAITFTNKAAAEMKE 63 Query: 81 RVLEII 86 RV ++ Sbjct: 64 RVGSLV 69 >gi|76802567|ref|YP_327575.1| helicase [Natronomonas pharaonis DSM 2160] gi|76558432|emb|CAI50023.1| probable helicase [Natronomonas pharaonis DSM 2160] Length = 1028 Score = 38.1 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 2/82 (2%) Query: 3 YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62 Y + F + E + +++ + E ++ +D R+ V+A AG+GKT L RV L+ P Sbjct: 242 YDDLFSDIDEEGNDLNRAQREAVVTND-LRNLVVAA-AGTGKTLALTYRVAYLVAEGVDP 299 Query: 63 STLLCLTHTKAAAAEMSHRVLE 84 + + LT+T+ AA EM R+ E Sbjct: 300 ARIAALTYTRQAAREMELRLEE 321 >gi|58616965|ref|YP_196164.1| DNA helicase II [Ehrlichia ruminantium str. Gardel] gi|58416577|emb|CAI27690.1| DNA helicase II [Ehrlichia ruminantium str. Gardel] Length = 639 Score = 38.1 bits (87), Expect = 0.95, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AG+GKT + R+ +L N A P+ +L +T T AA EM R+ E+ A Sbjct: 27 AGAGTGKTRTITSRIAYILNNNFALPNQILAVTFTNKAANEMLSRINELTCA 78 >gi|325972020|ref|YP_004248211.1| UvrD/REP helicase [Spirochaeta sp. Buddy] gi|324027258|gb|ADY14017.1| UvrD/REP helicase [Spirochaeta sp. Buddy] Length = 754 Score = 38.1 bits (87), Expect = 0.96, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 43/173 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72 ++ +++ + E +L ++ R V A AGSGKT ++ ++ + P+ +L +T T Sbjct: 8 LEALNEQQREAVLENE--RPLLVLAGAGSGKTRVITTKIAYAVEKLGIPAYKILAVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA+EM RV ++ S + D Sbjct: 66 KAASEMKERVGVMLDGNSQVED------------------------------------CT 89 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA----KKSTLASIM 181 ++T H+F ++++F E + S+F I D++ S L+ KK L +M Sbjct: 90 IRTFHSFGAWLLRRFGSEIGLASNFTIYDDDDSLSLLASCFPNYKKRELDPVM 142 >gi|227893040|ref|ZP_04010845.1| ATP-dependent DNA helicase PcrA [Lactobacillus ultunensis DSM 16047] gi|227865153|gb|EEJ72574.1| ATP-dependent DNA helicase PcrA [Lactobacillus ultunensis DSM 16047] Length = 748 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 V A AGSGKT +L +R+ L+ N P +L +T T AA EM R Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKAATEMRDR 73 >gi|166033310|ref|ZP_02236139.1| hypothetical protein DORFOR_03036 [Dorea formicigenerans ATCC 27755] gi|166027667|gb|EDR46424.1| hypothetical protein DORFOR_03036 [Dorea formicigenerans ATCC 27755] Length = 763 Score = 38.1 bits (87), Expect = 0.96, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ +P +L +T T AAAEM RV ++ Sbjct: 35 ILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAAEMRERVDNLV 86 >gi|309973157|gb|ADO96358.1| Exodeoxyribonuclease V, beta subunit [Haemophilus influenzae R2846] Length = 1211 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 32/146 (21%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT+ + LRLLL + +L +T T+ A E+ ++ E IT Sbjct: 20 IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79 Query: 88 -------AWSHL-------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 A++ +DE L+A + D+ +A H L + + Sbjct: 80 DAIDKLIAFAETQDKSAFKNDEFLTALCDNL--------DIFEAIHRLKLAEQNMDLAAI 131 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAI 159 TIH FC ++ Q+ + I HF + Sbjct: 132 YTIHGFCRRMLMQYAFHSGI--HFNL 155 >gi|317486423|ref|ZP_07945250.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6] gi|316922333|gb|EFV43592.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6] Length = 1075 Score = 38.1 bits (87), Expect = 0.96, Method: Composition-based stats. Identities = 22/47 (46%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A GSGKT LV RV RLL +L +T T+ AAAE+ R+ Sbjct: 506 VLAGPGSGKTRTLVGRVQRLLKDGIPAQRILAVTFTRRAAAELRERL 552 >gi|300813299|ref|ZP_07093654.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512570|gb|EFK39715.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 720 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 4/74 (5%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72 ID ++ + E LL ++ + A AGSGKT ++ ++ L+ N PS +L +T T Sbjct: 3 IDSLNDKQKEALLYNEG--PLLILAGAGSGKTKVVTSKIA-YLIENEVPSWRILAITFTN 59 Query: 73 AAAAEMSHRVLEII 86 AA EM RV +I Sbjct: 60 KAAREMRERVAMLI 73 >gi|161507067|ref|YP_001577021.1| ATP-dependent helicase [Lactobacillus helveticus DPC 4571] gi|160348056|gb|ABX26730.1| ATP-dependent helicase [Lactobacillus helveticus DPC 4571] Length = 748 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 V A AGSGKT +L +R+ L+ N P +L +T T AA EM R Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAANEMRER 73 >gi|90416555|ref|ZP_01224486.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium HTCC2207] gi|90331754|gb|EAS46982.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium HTCC2207] Length = 676 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 14/103 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITA------ 88 V A AGSGKT ++ Q++ L+ P+ + +T T AA EM RV +++ Sbjct: 22 VLAGAGSGKTSVITQKIAYLVEECGIPARNIAAVTFTNKAAREMKARVASLLSGADGRGL 81 Query: 89 ----WSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITIL 125 + +L I+ +EI K G KP S D R+LL +L Sbjct: 82 TVSTFHNLGLNIIRSEI-KALGFKPGFSILDQEDCRNLLKELL 123 >gi|87302318|ref|ZP_01085143.1| UvrD/REP helicase-like protein [Synechococcus sp. WH 5701] gi|87283243|gb|EAQ75199.1| UvrD/REP helicase-like protein [Synechococcus sp. WH 5701] Length = 1285 Score = 38.1 bits (87), Expect = 0.97, Method: Composition-based stats. Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 9/126 (7%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV-------LEIIT 87 + A+AG+GKT L VLRL+ LL +T TKAAAAE+ R+ +++ Sbjct: 21 IEASAGTGKTFTLAHLVLRLVGERQLSLRALLVVTFTKAAAAELRDRIGRRLQQAQQLLQ 80 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 E L E+ + G P + + + R L+ LE + TIH FC +Q+ Sbjct: 81 TPDPAGHEGLDQELKEWLGNIPPQ-NYERLRAQLLLALEELDAADITTIHGFCHRSLQRQ 139 Query: 148 PLEANI 153 LEA + Sbjct: 140 ALEAGL 145 >gi|116511959|ref|YP_809175.1| ATP-dependent DNA helicase PcrA [Lactococcus lactis subsp. cremoris SK11] gi|116107613|gb|ABJ72753.1| ATP-dependent DNA helicase PcrA [Lactococcus lactis subsp. cremoris SK11] Length = 758 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVL 83 + A AGSGKT +L R+ L+ +P +L +T T AA EM R L Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAKEMRERAL 73 >gi|323467081|gb|ADX70768.1| ATP-dependent DNA helicase PcrA [Lactobacillus helveticus H10] Length = 753 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 V A AGSGKT +L +R+ L+ N P +L +T T AA EM R Sbjct: 32 VVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKAANEMRER 78 >gi|296392994|ref|YP_003657878.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985] gi|296180141|gb|ADG97047.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985] Length = 1062 Score = 38.1 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAA 74 + + EQ++ + P S+ V A AGSGKT + RV+ L+AN P +L LT T++A Sbjct: 15 VPSEEQEQVIGA-PLASSAVLAGAGSGKTETVAARVV-WLIANGLVEPEHVLGLTFTRSA 72 Query: 75 AAEMSHRV 82 A M RV Sbjct: 73 ARGMLARV 80 >gi|238855395|ref|ZP_04645706.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 269-3] gi|260665364|ref|ZP_05866212.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii SJ-7A-US] gi|282932094|ref|ZP_06337551.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1] gi|313473070|ref|ZP_07813554.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 1153] gi|238831993|gb|EEQ24319.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 269-3] gi|239528703|gb|EEQ67704.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 1153] gi|260560868|gb|EEX26844.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii SJ-7A-US] gi|281303773|gb|EFA95918.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1] Length = 754 Score = 38.1 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 43/142 (30%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L +R+ L+ P +L +T T AA EM RV +++ Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEEKGVAPWNILAITFTNKAATEMKERVQKLL-------- 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV--QTIHAFCEAIMQQFPLEAN 152 P G V T HA C I+++ + Sbjct: 79 --------------------------------GPAGQDVWMSTFHALCVRILRRDADKIG 106 Query: 153 ITSHFAIADEEQSKKLIEEAKK 174 + +F+IAD + LI+ +K Sbjct: 107 YSRNFSIADSSEQVTLIKHIEK 128 >gi|242808279|ref|XP_002485129.1| ATP-depentend DNA helicase, putative [Talaromyces stipitatus ATCC 10500] gi|218715754|gb|EED15176.1| ATP-depentend DNA helicase, putative [Talaromyces stipitatus ATCC 10500] Length = 1033 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 11/81 (13%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKAAAAEM 78 +++ + PT V A GSGKT L RV LL + H P ++C T T A+ EM Sbjct: 13 AQRTAVTSPTSVLQVLAPPGSGKTKTLTARVAYLLSSKHHGFRPQDVICCTFTIKASREM 72 Query: 79 SHRVLEIITAWSHL-SDEILS 98 R+ SHL D+++S Sbjct: 73 RERL-------SHLIGDQVVS 86 >gi|121604380|ref|YP_981709.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2] gi|120593349|gb|ABM36788.1| ATP-dependent DNA helicase UvrD [Polaromonas naphthalenivorans CJ2] Length = 781 Score = 38.1 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 P A + A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 4 PATHALILAGAGSGKTRVLTTRIAWLLQTGQVSPGGILAVTFTNKAAKEMLTRL 57 >gi|6900322|emb|CAB71343.1| putative ATP-dependent nuclease [Lactobacillus delbrueckii subsp. bulgaricus] Length = 64 Score = 38.1 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 33/43 (76%), Gaps = 1/43 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77 VSA+AGSGKT +LV+RV+R ++ + + LL +T T+AAA+E Sbjct: 22 VSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAASE 64 >gi|88808097|ref|ZP_01123608.1| UvrD/REP helicase [Synechococcus sp. WH 7805] gi|88788136|gb|EAR19292.1| UvrD/REP helicase [Synechococcus sp. WH 7805] Length = 794 Score = 38.1 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 22/146 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+ + A P+ +L +T T AA EM R LE+ Sbjct: 24 VVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFTNKAAREMKER-LEL--------- 73 Query: 95 EILSAEITKIQGKKP-NKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQQFPLEA- 151 +L+ + + Q +P + + R L I E L + T HA A M ++ ++ Sbjct: 74 -LLAQRLAQSQFGQPWSTLPPVEQRQLRSRIYREVTKELWIGTFHALF-ARMLRYDIDKF 131 Query: 152 ------NITSHFAIADEEQSKKLIEE 171 + T F+I DE ++ L++E Sbjct: 132 KDSEGLSWTKQFSIYDEADAQSLVKE 157 >gi|331085909|ref|ZP_08334992.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406832|gb|EGG86337.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 741 Score = 38.1 bits (87), Expect = 0.99, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ +P +L +T T AA EM RV +I+ Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIEEKGINPWNILAITFTNKAAGEMRERVDDIV 75 >gi|313117106|ref|YP_004038230.1| DNA/RNA helicase, superfamily I [Halogeometricum borinquense DSM 11551] gi|312295058|gb|ADQ69094.1| DNA/RNA helicase, superfamily I [Halogeometricum borinquense DSM 11551] Length = 1180 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT L RV L+ +L +T T+ AA EMS R+ E+ Sbjct: 449 VIAGAGTGKTFSLSCRVKYLVEEGVSEDDILAMTFTRKAATEMSDRLDEMF 499 >gi|296158754|ref|ZP_06841583.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. Ch1-1] gi|295890959|gb|EFG70748.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. Ch1-1] Length = 1230 Score = 38.1 bits (87), Expect = 0.99, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 7/118 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSH 91 + A+AG+GKT + +RLLL N + +L +T TKAA AE+ R+ L + Sbjct: 28 IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRGRLAELHRAIE 87 Query: 92 LSDEILSAEITKI--QGKKPNKS-DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + D+ + ++ P + + A ++ L T + TIHAFC+ +Q+ Sbjct: 88 MDDDGGDPFVRRLFETTLAPERGIEREAALKMVRRALRTFDQAAIHTIHAFCQRALQE 145 >gi|159480686|ref|XP_001698413.1| N-ethylmaleimide sensitive fusion protein [Chlamydomonas reinhardtii] gi|158282153|gb|EDP07906.1| N-ethylmaleimide sensitive fusion protein [Chlamydomonas reinhardtii] Length = 719 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 15/118 (12%) Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 A M H ++ A+ HL E L + +++ S LL +LE P G Sbjct: 480 AYMGHGIISCGEAFDHLR-ETLGMLVQQVRA--------SDKTPLLSVVLEGPVGSGKSA 530 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSK-----KLIEEAKKSTLASIMLDNNEEL 188 + A AI FP +TS + EQ+K K+ E+A KS ++ ++LD+ E L Sbjct: 531 LAA-SAAIGSDFPFLKVVTSESMVGFSEQAKASQITKVFEDAYKSPMSVVILDDIERL 587 >gi|91790119|ref|YP_551071.1| UvrD/REP helicase [Polaromonas sp. JS666] gi|91699344|gb|ABE46173.1| UvrD/REP helicase [Polaromonas sp. JS666] Length = 716 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ ++ RL+ + + +T T AAAEM R +I Sbjct: 42 VLAGAGSGKTRVITHKIGRLIQSGLKAEQIAAITFTNKAAAEMRERAKSLI 92 >gi|37525714|ref|NP_929058.1| DNA helicase IV [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785143|emb|CAE14072.1| DNA helicase IV [Photorhabdus luminescens subsp. laumondii TTO1] Length = 684 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRV-LRLLLANAHPSTLLCLTHTKAAAAEM 78 +S+ L + S V A AGSGKT +LV R LLL A P +L L + A EM Sbjct: 198 NRSQSLAVINGENSVLVLAGAGSGKTSVLVARAGWLLLLQQAIPEQILLLAFSHQAVNEM 257 Query: 79 SHRV 82 + R+ Sbjct: 258 NERI 261 >gi|238749724|ref|ZP_04611229.1| Helicase IV (75 kDa helicase) [Yersinia rohdei ATCC 43380] gi|238712379|gb|EEQ04592.1| Helicase IV (75 kDa helicase) [Yersinia rohdei ATCC 43380] Length = 684 Score = 38.1 bits (87), Expect = 1.00, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +LV R LL N A P +L L + AA EM+ R+ Sbjct: 214 VLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNSRI 261 >gi|89055268|ref|YP_510719.1| ATP-dependent DNA helicase Rep [Jannaschia sp. CCS1] gi|88864817|gb|ABD55694.1| ATP-dependent DNA helicase, Rep family [Jannaschia sp. CCS1] Length = 817 Score = 38.1 bits (87), Expect = 1.00, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 38/135 (28%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AG+GKT L R+ L+ A P+ +L +T T AA EM RV Sbjct: 53 AGAGTGKTRALTARIAHLMSTGTARPNEILAVTFTNKAAREMKTRV-------------- 98 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 HLL E G + T HA C ++++ A + S+ Sbjct: 99 ---------------------GHLLGQPAE--GMPWLGTFHAICVKLLRRHAELAGLKSN 135 Query: 157 FAIADEEQSKKLIEE 171 F I D + +L+++ Sbjct: 136 FTILDTDDQTRLMKQ 150 >gi|294102626|ref|YP_003554484.1| Exodeoxyribonuclease V [Aminobacterium colombiense DSM 12261] gi|293617606|gb|ADE57760.1| Exodeoxyribonuclease V [Aminobacterium colombiense DSM 12261] Length = 1173 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 VSA AG+GKT L R + +L+ A + +L LT T+ AA EM+ R+ ++ Sbjct: 35 VSAGAGTGKTWTLAWRFIWILVTGRADTNEILTLTFTEKAALEMAERIKNLL 86 >gi|261493211|ref|ZP_05989738.1| Rep family ATP-dependent helicase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311061|gb|EEY12237.1| Rep family ATP-dependent helicase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 672 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Query: 22 SEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMS 79 S+Q A + T+ A V A AGSGKT +++ ++ L+ + P + +T T AA EM Sbjct: 5 SQQQQAVEYTKGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMR 64 Query: 80 HRV 82 RV Sbjct: 65 ERV 67 >gi|240172137|ref|ZP_04750796.1| ATP-dependent DNA helicase [Mycobacterium kansasii ATCC 12478] Length = 1066 Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 29/116 (25%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 V A AG+GKT + RV+ L+AN A P +L LT T+ AA ++ RV Sbjct: 11 VIAGAGAGKTETMAARVV-WLIANGYAEPGQVLGLTFTRKAAGQLLRRV----------- 58 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + + ++ G +P + E+ G V T HAF ++++ + L Sbjct: 59 ----RSRLARLAGLEPGAA-----------ACESAGTPVVSTYHAFAGSLLRDYGL 99 >gi|225568813|ref|ZP_03777838.1| hypothetical protein CLOHYLEM_04892 [Clostridium hylemonae DSM 15053] gi|225162312|gb|EEG74931.1| hypothetical protein CLOHYLEM_04892 [Clostridium hylemonae DSM 15053] Length = 743 Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ +P +L +T T AA EM RV I+ Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAGEMRERVDNIV 75 >gi|74318467|ref|YP_316207.1| ATP-dependent DNA helicase UvrD [Thiobacillus denitrificans ATCC 25259] gi|74057962|gb|AAZ98402.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC 25259] Length = 726 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 P SA + A AGSGKT +L R++ L+ P +L +T T AA EM R+ Sbjct: 26 PHESALILAGAGSGKTRVLTTRIVWLVQTGQVSPHGILAVTFTNKAAKEMLTRI 79 >gi|5542368|pdb|1QHH|A Chain A, Structure Of Dna Helicase With Adpnp Length = 167 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+A H P +L +T T AA EM RV ++ Sbjct: 29 IMAGAGSGKTRVLTHRIA-YLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGG 82 >gi|71275278|ref|ZP_00651565.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Dixon] gi|71900136|ref|ZP_00682277.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Ann-1] gi|71164087|gb|EAO13802.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Dixon] gi|71730085|gb|EAO32175.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Ann-1] Length = 658 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++V+++ L+ ++ +P+ + +T T +A EM RV + I Sbjct: 21 VLAGAGSGKTRVIVEKIAYLITSDCYPAKRIAAITFTNKSAKEMRERVAKQI 72 >gi|71902080|ref|ZP_00684118.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Ann-1] gi|71728157|gb|EAO30350.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Ann-1] Length = 658 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++V+++ L+ ++ +P+ + +T T +A EM RV + I Sbjct: 21 VLAGAGSGKTRVIVEKIAYLITSDCYPAKRIAAITFTNKSAKEMRERVAKQI 72 >gi|22126608|ref|NP_670031.1| DNA helicase IV [Yersinia pestis KIM 10] gi|45441158|ref|NP_992697.1| DNA helicase IV [Yersinia pestis biovar Microtus str. 91001] gi|108806729|ref|YP_650645.1| DNA helicase IV [Yersinia pestis Antiqua] gi|108812700|ref|YP_648467.1| DNA helicase IV [Yersinia pestis Nepal516] gi|145598818|ref|YP_001162894.1| DNA helicase IV [Yersinia pestis Pestoides F] gi|162421603|ref|YP_001607560.1| DNA helicase IV [Yersinia pestis Angola] gi|166011987|ref|ZP_02232885.1| helicase IV [Yersinia pestis biovar Antiqua str. E1979001] gi|166211746|ref|ZP_02237781.1| helicase IV [Yersinia pestis biovar Antiqua str. B42003004] gi|167402312|ref|ZP_02307780.1| helicase IV [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167423870|ref|ZP_02315623.1| helicase IV [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229894374|ref|ZP_04509557.1| DNA helicase IV [Yersinia pestis Pestoides A] gi|229903096|ref|ZP_04518211.1| DNA helicase IV [Yersinia pestis Nepal516] gi|270486898|ref|ZP_06203972.1| UvrD/REP helicase [Yersinia pestis KIM D27] gi|294503424|ref|YP_003567486.1| DNA helicase IV [Yersinia pestis Z176003] gi|21959616|gb|AAM86282.1|AE013875_11 DNA helicase IV [Yersinia pestis KIM 10] gi|45436018|gb|AAS61574.1| DNA helicase IV [Yersinia pestis biovar Microtus str. 91001] gi|108776348|gb|ABG18867.1| helicase IV [Yersinia pestis Nepal516] gi|108778642|gb|ABG12700.1| putative helicase IV [Yersinia pestis Antiqua] gi|145210514|gb|ABP39921.1| helicase IV [Yersinia pestis Pestoides F] gi|162354418|gb|ABX88366.1| helicase IV [Yersinia pestis Angola] gi|165989154|gb|EDR41455.1| helicase IV [Yersinia pestis biovar Antiqua str. E1979001] gi|166207517|gb|EDR51997.1| helicase IV [Yersinia pestis biovar Antiqua str. B42003004] gi|167048278|gb|EDR59686.1| helicase IV [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056719|gb|EDR66482.1| helicase IV [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679876|gb|EEO75977.1| DNA helicase IV [Yersinia pestis Nepal516] gi|229703772|gb|EEO90788.1| DNA helicase IV [Yersinia pestis Pestoides A] gi|262361467|gb|ACY58188.1| DNA helicase IV [Yersinia pestis D106004] gi|262365394|gb|ACY61951.1| DNA helicase IV [Yersinia pestis D182038] gi|270335402|gb|EFA46179.1| UvrD/REP helicase [Yersinia pestis KIM D27] gi|294353883|gb|ADE64224.1| DNA helicase IV [Yersinia pestis Z176003] gi|320015694|gb|ADV99265.1| DNA helicase IV [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 684 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +LV R LL N A P +L L + AA EM+ R+ Sbjct: 214 VLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNSRI 261 >gi|294012022|ref|YP_003545482.1| putative ATP-dependent DNA helicase [Sphingobium japonicum UT26S] gi|292675352|dbj|BAI96870.1| putative ATP-dependent DNA helicase [Sphingobium japonicum UT26S] Length = 1134 Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 25/47 (53%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 + A G+GKT L RV LL P +L LT + AA EM+ R+ Sbjct: 214 LEAGPGTGKTQTLTARVEGLLAEGVDPRRILLLTFSNKAAGEMAERI 260 >gi|168186071|ref|ZP_02620706.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum C str. Eklund] gi|169296014|gb|EDS78147.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum C str. Eklund] Length = 760 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 39/140 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ ++ P +L +T T AA EM R+ ++++ Sbjct: 24 VLAGAGSGKTRVLTYRIAHMIEDLEIPQYNILAITFTNKAAGEMKDRIKKLVS------- 76 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E + V T H+ C I+++ + Sbjct: 77 -------------------------------ENIDSMWVSTFHSCCVRILRREIDKLGYN 105 Query: 155 SHFAIADEEQSKKLIEEAKK 174 +FAI D K L+++ K Sbjct: 106 KNFAIYDSSDQKNLVKQCMK 125 >gi|170731281|ref|YP_001776714.1| ATP-dependent DNA helicase [Xylella fastidiosa M12] gi|167966074|gb|ACA13084.1| ATP-dependent DNA helicase [Xylella fastidiosa M12] Length = 658 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++V+++ L+ ++ +P+ + +T T +A EM RV + I Sbjct: 21 VLAGAGSGKTRVIVEKIAYLITSDCYPAKRIAAITFTNKSAKEMRERVAKQI 72 >gi|145641651|ref|ZP_01797228.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae R3021] gi|145273698|gb|EDK13567.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 22.4-21] Length = 445 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 28/144 (19%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT+ + LRLLL + +L +T T+ A E+ ++ E IT Sbjct: 20 IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSD--MSKARHLLITILETPGGLK----------VQT 135 + + L+A K Q K K+D ++ H L I E LK + T Sbjct: 80 D----AIDKLTA-FAKTQDKSAFKNDEFLTALCHDL-DIFEAIHRLKLAEQNMDLAAIYT 133 Query: 136 IHAFCEAIMQQFPLEANITSHFAI 159 IH FC ++ Q+ + I HF + Sbjct: 134 IHGFCRRMLMQYAFHSGI--HFNL 155 >gi|28199902|ref|NP_780216.1| ATP-dependent DNA helicase/DNA helicase II [Xylella fastidiosa Temecula1] gi|182682653|ref|YP_001830813.1| ATP-dependent DNA helicase Rep [Xylella fastidiosa M23] gi|28058023|gb|AAO29865.1| ATP-dependent DNA helicase/DNA helicase II [Xylella fastidiosa Temecula1] gi|182632763|gb|ACB93539.1| ATP-dependent DNA helicase Rep [Xylella fastidiosa M23] gi|307578933|gb|ADN62902.1| ATP-dependent DNA helicase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 658 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++V+++ L+ ++ +P+ + +T T +A EM RV + I Sbjct: 21 VLAGAGSGKTRVIVEKIAYLITSDCYPAKRIAAITFTNKSAKEMRERVAKQI 72 >gi|152974126|ref|YP_001373643.1| ATP-dependent DNA helicase PcrA [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022878|gb|ABS20648.1| ATP-dependent DNA helicase PcrA [Bacillus cytotoxicus NVH 391-98] Length = 741 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNILAITFTNKAAREMRERI 75 >gi|325662111|ref|ZP_08150729.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 4_1_37FAA] gi|325471560|gb|EGC74780.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 4_1_37FAA] Length = 741 Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ +P +L +T T AA EM RV +I+ Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIEEKGINPWNILAITFTNKAAGEMRERVDDIV 75 >gi|269218850|ref|ZP_06162704.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 848 str. F0332] gi|269211961|gb|EEZ78301.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 848 str. F0332] Length = 831 Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L R+ L+ + A P +L +T T AA EM R+ Sbjct: 29 VVAGAGSGKTRVLTSRIGYLIASGRAAPGQILAITFTNKAAREMRERL 76 >gi|300771529|ref|ZP_07081404.1| UvrD/REP helicase domain protein [Sphingobacterium spiritivorum ATCC 33861] gi|300761518|gb|EFK58339.1| UvrD/REP helicase domain protein [Sphingobacterium spiritivorum ATCC 33861] Length = 1075 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 5/129 (3%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AGSGKT L L LL + + +L +T T A EM R+L+++ ++ Sbjct: 10 LKASAGSGKTFSLAVHYLTLLFHHEYKYREILAVTFTNKATEEMKTRILDVLKGLANNDP 69 Query: 95 EILSAEITKIQGKK-PNKSDM---SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + ++ K P S + +A+ + IL V TI F + +++ F E Sbjct: 70 SPGTDNYRQLLLKAYPQYSHIELQERAQKIYRRILHDYSHFSVSTIDGFVQKVIRGFAFE 129 Query: 151 ANITSHFAI 159 + + +++ Sbjct: 130 LGLDAAYSL 138 >gi|229083589|ref|ZP_04215918.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-44] gi|228699721|gb|EEL52377.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-44] Length = 745 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|229101109|ref|ZP_04231875.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-28] gi|228682237|gb|EEL36348.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-28] Length = 749 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|229095008|ref|ZP_04226004.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-29] gi|229113961|ref|ZP_04243387.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-3] gi|228669420|gb|EEL24836.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-3] gi|228688338|gb|EEL42220.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-29] Length = 749 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|257790705|ref|YP_003181311.1| UvrD/REP helicase [Eggerthella lenta DSM 2243] gi|257474602|gb|ACV54922.1| UvrD/REP helicase [Eggerthella lenta DSM 2243] Length = 813 Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 39/137 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ L+ + P +L +T T AAAEM R+ ++ Sbjct: 25 VLAGAGSGKTRVLTYRIANLIENHDVAPWEILAITFTNKAAAEMRERLNGLVG------- 77 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + R G+ V T H+ C +++ + T Sbjct: 78 --------------------PRCR-----------GMWVSTFHSMCVRMLRSDAEKLGFT 106 Query: 155 SHFAIADEEQSKKLIEE 171 +F I D + K+L +E Sbjct: 107 RNFTIYDTDDQKRLYKE 123 >gi|167737949|ref|ZP_02410723.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 14] Length = 610 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P + + R L + + TIHAFC+ Sbjct: 87 TGDGGGDPFIARLFETTLAPGRGLDPQTA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|146276730|ref|YP_001166889.1| UvrD/REP helicase [Rhodobacter sphaeroides ATCC 17025] gi|145554971|gb|ABP69584.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides ATCC 17025] Length = 783 Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AG+GKT L R++ LL A P+ +L +T T AA EM RV ++ Sbjct: 51 AGAGTGKTKALTARIVHLLDSGRARPNEILAVTFTNKAAREMKDRVARML 100 >gi|116620297|ref|YP_822453.1| ATP-dependent DNA helicase Rep [Candidatus Solibacter usitatus Ellin6076] gi|116223459|gb|ABJ82168.1| ATP-dependent DNA helicase, Rep family [Candidatus Solibacter usitatus Ellin6076] Length = 788 Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT ++ R+ ++ + + PS +L +T T AA EM RV ++ Sbjct: 24 ILAGAGSGKTRVITHRIAHIITSRHVPPSAVLAVTFTNKAAKEMRERVAALL 75 >gi|228906067|ref|ZP_04069956.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 200] gi|228853476|gb|EEM98244.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 200] Length = 753 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|238789275|ref|ZP_04633062.1| Helicase IV (75 kDa helicase) [Yersinia frederiksenii ATCC 33641] gi|238722607|gb|EEQ14260.1| Helicase IV (75 kDa helicase) [Yersinia frederiksenii ATCC 33641] Length = 684 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +LV R LL N A P +L L + AA EM+ R+ Sbjct: 214 VLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNSRI 261 >gi|51595798|ref|YP_069989.1| DNA helicase IV [Yersinia pseudotuberculosis IP 32953] gi|153948937|ref|YP_001401501.1| DNA helicase IV [Yersinia pseudotuberculosis IP 31758] gi|170024850|ref|YP_001721355.1| DNA helicase IV [Yersinia pseudotuberculosis YPIII] gi|186894881|ref|YP_001871993.1| DNA helicase IV [Yersinia pseudotuberculosis PB1/+] gi|51589080|emb|CAH20698.1| putative DNA helicase IV [Yersinia pseudotuberculosis IP 32953] gi|152960432|gb|ABS47893.1| helicase IV [Yersinia pseudotuberculosis IP 31758] gi|169751384|gb|ACA68902.1| UvrD/REP helicase [Yersinia pseudotuberculosis YPIII] gi|186697907|gb|ACC88536.1| UvrD/REP helicase [Yersinia pseudotuberculosis PB1/+] Length = 684 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +LV R LL N A P +L L + AA EM+ R+ Sbjct: 214 VLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNSRI 261 >gi|332184910|ref|ZP_08386659.1| uvrD/REP helicase family protein [Sphingomonas sp. S17] gi|332014634|gb|EGI56690.1| uvrD/REP helicase family protein [Sphingomonas sp. S17] Length = 765 Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 ++ + E +L +D V A AG+GKT L R+ LL A PS +L +T T AA Sbjct: 21 LNPAQREAVLTTDG--PVLVLAGAGTGKTAALTARLAHLLYTRKAWPSEILSVTFTNKAA 78 Query: 76 AEMSHRVLEII 86 EM RV ++ Sbjct: 79 REMRERVGRLV 89 >gi|254510274|ref|ZP_05122341.1| UvrD/REP helicase [Rhodobacteraceae bacterium KLH11] gi|221533985|gb|EEE36973.1| UvrD/REP helicase [Rhodobacteraceae bacterium KLH11] Length = 971 Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 21/120 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV-------LEIIT 87 V A AGSGKT ++ + L+ PS +L L + K AA EMS R+ LE T Sbjct: 223 VLAGAGSGKTSVITAKAGYLIKTKTRAPSEILLLAYAKDAAKEMSERIELRCGEPLEART 282 Query: 88 AWSHLSDEILSAEITKIQGKKP--------NKSDMSKARHLLITILETPGGLKVQTIHAF 139 + L++ I+ ++G KP +K+ ++ + +LI ++ T G+ I F Sbjct: 283 -FHALANGIIGI----VEGSKPALAKHATDDKAYLALIKDILIALVRTTAGVSRAIIGWF 337 >gi|261496545|ref|ZP_05992925.1| Rep family ATP-dependent helicase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307748|gb|EEY09071.1| Rep family ATP-dependent helicase [Mannheimia haemolytica serotype A2 str. OVINE] Length = 672 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Query: 22 SEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMS 79 S+Q A + T+ A V A AGSGKT +++ ++ L+ + P + +T T AA EM Sbjct: 5 SQQQQAVEYTKGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMR 64 Query: 80 HRV 82 RV Sbjct: 65 ERV 67 >gi|237713878|ref|ZP_04544359.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262409213|ref|ZP_06085757.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647413|ref|ZP_06725001.1| ATP-dependent DNA helicase, RecQ family [Bacteroides ovatus SD CC 2a] gi|294809804|ref|ZP_06768486.1| ATP-dependent DNA helicase, RecQ family [Bacteroides xylanisolvens SD CC 1b] gi|229446034|gb|EEO51825.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262352960|gb|EEZ02056.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637240|gb|EFF55670.1| ATP-dependent DNA helicase, RecQ family [Bacteroides ovatus SD CC 2a] gi|294442990|gb|EFG11775.1| ATP-dependent DNA helicase, RecQ family [Bacteroides xylanisolvens SD CC 1b] Length = 1603 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V+A GSGKT +LV ++ LLL + LL LT ++AAA E R+ ++I Sbjct: 1068 VAAGPGSGKTRLLVHKLASLLLMEDVKHEQLLMLTFSRAAANEFRSRLHDLI 1119 >gi|196040164|ref|ZP_03107466.1| ATP-dependent DNA helicase PcrA [Bacillus cereus NVH0597-99] gi|196029019|gb|EDX67624.1| ATP-dependent DNA helicase PcrA [Bacillus cereus NVH0597-99] Length = 751 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|254362674|ref|ZP_04978761.1| Rep family ATP-dependent helicase [Mannheimia haemolytica PHL213] gi|153094293|gb|EDN75157.1| Rep family ATP-dependent helicase [Mannheimia haemolytica PHL213] Length = 672 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Query: 22 SEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMS 79 S+Q A + T+ A V A AGSGKT +++ ++ L+ + P + +T T AA EM Sbjct: 5 SQQQQAVEYTKGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMR 64 Query: 80 HRV 82 RV Sbjct: 65 ERV 67 >gi|229015685|ref|ZP_04172668.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1273] gi|228745602|gb|EEL95621.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1273] Length = 751 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|229028144|ref|ZP_04184286.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1271] gi|228733162|gb|EEL84002.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1271] Length = 751 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|229089419|ref|ZP_04220690.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-42] gi|228693896|gb|EEL47588.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-42] Length = 751 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|225873408|ref|YP_002754867.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium capsulatum ATCC 51196] gi|225793677|gb|ACO33767.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium capsulatum ATCC 51196] Length = 943 Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 45/143 (31%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT ++ R+ L+ P ++L +T T AA EM+ RV +I S L+ Sbjct: 25 ILAGAGSGKTRVITHRIAYLIQERGVAPDSILAVTFTNKAAKEMAERVDALI-GHSTLAK 83 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA--- 151 +L+ T H+FC ++++ +EA Sbjct: 84 PVLA------------------------------------TFHSFCVRMLRR-DIEALRI 106 Query: 152 ---NITSHFAIADEEQSKKLIEE 171 +T FAI DE + L+++ Sbjct: 107 GNEGLTKTFAIYDESDQQSLVKQ 129 >gi|228899022|ref|ZP_04063295.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222] gi|228860597|gb|EEN04984.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222] Length = 749 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75 >gi|196045338|ref|ZP_03112570.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB108] gi|196023922|gb|EDX62597.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB108] Length = 753 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|75759917|ref|ZP_00739988.1| DNA helicase II [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218895412|ref|YP_002443823.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9842] gi|74492584|gb|EAO55729.1| DNA helicase II [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218541975|gb|ACK94369.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9842] Length = 753 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|312879906|ref|ZP_07739706.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260] gi|310783197|gb|EFQ23595.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260] Length = 659 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 S V A AGSGKT +L +++ L+ P +L +T T AA EM RV +++ Sbjct: 27 SQLVLAGAGSGKTRVLTRKIAFLIRELGISPGRILAVTFTNKAAGEMRERVEKLL 81 >gi|257052787|ref|YP_003130620.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940] gi|256691550|gb|ACV11887.1| UvrD/REP helicase [Halorhabdus utahensis DSM 12940] Length = 948 Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 26/48 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 V A AG+GKT + +R LL P +L +T T AA EM RV+ Sbjct: 23 VDAGAGTGKTFAITRRYANLLSEGYEPDDVLLVTFTNNAATEMKERVV 70 >gi|218231540|ref|YP_002365134.1| ATP-dependent DNA helicase PcrA [Bacillus cereus B4264] gi|218159497|gb|ACK59489.1| ATP-dependent DNA helicase PcrA [Bacillus cereus B4264] Length = 753 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|113954302|ref|YP_730266.1| exodeoxyribonuclease V subunit beta [Synechococcus sp. CC9311] gi|113881653|gb|ABI46611.1| exodeoxyribonuclease V, beta subunit [Synechococcus sp. CC9311] Length = 1212 Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 27/150 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-------LEII- 86 + A+AG+GKT L VLRL+ + LL +T T++AAAE+ R+ L+ + Sbjct: 19 LEASAGTGKTFALAHLVLRLVTERKLNLKELLVVTFTESAAAELRDRIGRRLNDALQALL 78 Query: 87 ---------TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK---VQ 134 S +D ++ E + G+ PN R + +LE GL+ + Sbjct: 79 QNQTNNSNSQTDSSPTDAVME-EWLILHGQDPNTR-----RTIASNLLEALEGLERADIT 132 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQ 164 TIH FC +++ L+ + ++ Q Sbjct: 133 TIHGFCRRSLRRQALQNGTAMEVCLENDSQ 162 >gi|52144943|ref|YP_081887.1| ATP-dependent DNA helicase [Bacillus cereus E33L] gi|229154058|ref|ZP_04282183.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 4342] gi|51978412|gb|AAU19962.1| ATP-dependent DNA helicase [Bacillus cereus E33L] gi|228629338|gb|EEK86040.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 4342] Length = 751 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|297581208|ref|ZP_06943132.1| superfamily II DNA helicase [Vibrio cholerae RC385] gi|297534524|gb|EFH73361.1| superfamily II DNA helicase [Vibrio cholerae RC385] Length = 1756 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 3/81 (3%) Query: 9 EHS--ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65 EHS ++ ++ E ++ S P +S V A GSGK+ +++ R LL + P+ + Sbjct: 1107 EHSWKRIVEALNNPTQESIVQSSPEQSLLVLAGPGSGKSKVIIHRCAYLLRVKQVDPAKV 1166 Query: 66 LCLTHTKAAAAEMSHRVLEII 86 + L + AA + R+++++ Sbjct: 1167 MLLCYNHNAALSLRKRLVDLL 1187 >gi|293189251|ref|ZP_06607974.1| putative DNA helicase II [Actinomyces odontolyticus F0309] gi|292821714|gb|EFF80650.1| putative DNA helicase II [Actinomyces odontolyticus F0309] Length = 674 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 15/94 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AG+GKT + R+ A PS +L +T T+ AA EM HR+ ++ Sbjct: 30 VLAGAGTGKTRAITYRIAYGADVGAFDPSNVLAVTFTQRAAFEMRHRLAQL--------- 80 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 + K Q + + + + + RH T++ P Sbjct: 81 -----GVPKAQARTFHSAALRQLRHFWPTVVGGP 109 >gi|228913033|ref|ZP_04076672.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846438|gb|EEM91451.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 747 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75 >gi|228919227|ref|ZP_04082597.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840334|gb|EEM85605.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 753 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|229176883|ref|ZP_04304279.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 172560W] gi|228606556|gb|EEK63981.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 172560W] Length = 749 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75 >gi|206974372|ref|ZP_03235289.1| ATP-dependent DNA helicase PcrA [Bacillus cereus H3081.97] gi|217957863|ref|YP_002336407.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH187] gi|206747612|gb|EDZ59002.1| ATP-dependent DNA helicase PcrA [Bacillus cereus H3081.97] gi|217067002|gb|ACJ81252.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH187] Length = 751 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|110680702|ref|YP_683709.1| ATP-dependent DNA helicase [Roseobacter denitrificans OCh 114] gi|109456818|gb|ABG33023.1| ATP-dependent DNA helicase, UvrD/REP family domain [Roseobacter denitrificans OCh 114] Length = 1770 Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 3/74 (4%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL ++T+ E ++A D + + V A GSGKT +LV RV LL + P +L L + + Sbjct: 1157 DLGNKTQ-ESIVADDRASTNVLVLAGPGSGKTRVLVHRVAYLLRIKREDPRGILVLAYNR 1215 Query: 73 AAAAEMSHRVLEII 86 AA+E+ R+ ++ Sbjct: 1216 HAASEIRTRLAALV 1229 >gi|94994523|ref|YP_602621.1| DNA helicase II [Streptococcus pyogenes MGAS10750] gi|94548031|gb|ABF38077.1| DNA helicase II [Streptococcus pyogenes MGAS10750] Length = 772 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R L + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALSLNPA 78 >gi|30018548|ref|NP_830179.1| DNA helicase II [Bacillus cereus ATCC 14579] gi|229042192|ref|ZP_04189946.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH676] gi|229107966|ref|ZP_04237593.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-15] gi|229125791|ref|ZP_04254817.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-Cer4] gi|229143089|ref|ZP_04271522.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST24] gi|229148694|ref|ZP_04276944.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1550] gi|29894089|gb|AAP07380.1| DNA helicase II [Bacillus cereus ATCC 14579] gi|228634702|gb|EEK91281.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1550] gi|228640362|gb|EEK96759.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST24] gi|228657648|gb|EEL13460.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-Cer4] gi|228675469|gb|EEL30686.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-15] gi|228727127|gb|EEL78330.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH676] Length = 753 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|206968237|ref|ZP_03229193.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH1134] gi|228950847|ref|ZP_04112970.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068047|ref|ZP_04201355.1| ATP-dependent DNA helicase pcrA [Bacillus cereus F65185] gi|229077650|ref|ZP_04210280.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock4-2] gi|229188562|ref|ZP_04315601.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 10876] gi|206737157|gb|EDZ54304.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH1134] gi|228594751|gb|EEK52531.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 10876] gi|228705591|gb|EEL57947.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock4-2] gi|228715055|gb|EEL66922.1| ATP-dependent DNA helicase pcrA [Bacillus cereus F65185] gi|228808776|gb|EEM55272.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 753 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|296501120|ref|YP_003662820.1| DNA helicase II [Bacillus thuringiensis BMB171] gi|296322172|gb|ADH05100.1| DNA helicase II [Bacillus thuringiensis BMB171] Length = 749 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75 >gi|229171137|ref|ZP_04298731.1| ATP-dependent DNA helicase pcrA [Bacillus cereus MM3] gi|228612315|gb|EEK69543.1| ATP-dependent DNA helicase pcrA [Bacillus cereus MM3] Length = 753 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|193214838|ref|YP_001996037.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110] gi|193088315|gb|ACF13590.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110] Length = 700 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 18 SQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 S+ S Q A T A V A AG+GKT L RV L+ + S +L LT T+ AA Sbjct: 31 SELNSAQFEAVTTTDGALLVVAGAGTGKTKTLTYRVGYLIESGVPASDILLLTFTRRAAQ 90 Query: 77 EMSHRVLEI 85 EM R I Sbjct: 91 EMLARAAAI 99 >gi|324324304|gb|ADY19564.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 749 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75 >gi|315185499|gb|EFU19269.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578] Length = 683 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 40/133 (30%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT ++ ++ L+ A P+ ++L +T T AA EM R L++ Sbjct: 29 AGAGSGKTRVITTKIAYLVDALGIPARSILAVTFTNKAAREMYERALQL----------- 77 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 P G+ ++T H+F +++ + + Sbjct: 78 -----------SPRTE-----------------GVMIKTFHSFGVWLLRLYGERLGLARD 109 Query: 157 FAIADEEQSKKLI 169 FAI D+E ++ L+ Sbjct: 110 FAIYDDEDARALL 122 >gi|294621038|ref|ZP_06700230.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium U0317] gi|291599352|gb|EFF30377.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium U0317] Length = 326 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ L+ +P +L +T T AA EM RV I+ + Sbjct: 30 AGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEMKERVNAILAS 81 >gi|239787415|emb|CAX83890.1| Exodeoxyribonuclease V, beta subunit [uncultured bacterium] Length = 1228 Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 16/132 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST---------LLCLTHTKAAAAEMSHRV-LEI 85 + A+AG+GKT+ + +RL+L + ST +L +T T+AA E+ R+ + Sbjct: 21 IEASAGTGKTYTIALLYVRLVLGHGAGSTGRAPLTPPEILVVTFTRAATRELRERIRARL 80 Query: 86 ITAWSHLSDEILSAE-----ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 A + D A + ++ P ++ AR L + E V+TIH +C Sbjct: 81 AEAAACFRDAATDAAGWDPLLRALRAAYPPEAWTGCARRLQLAA-EWMDEASVETIHGWC 139 Query: 141 EAIMQQFPLEAN 152 ++Q+ +++ Sbjct: 140 HRMLQEHAFDSD 151 >gi|228956727|ref|ZP_04118513.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802915|gb|EEM49747.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar pakistani str. T13001] Length = 761 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|229119951|ref|ZP_04249206.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 95/8201] gi|228663417|gb|EEL19002.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 95/8201] Length = 751 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|218438504|ref|YP_002376833.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7424] gi|218171232|gb|ACK69965.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7424] Length = 772 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT L R+ L+ P +L +T T AA EM R+ I Sbjct: 28 VVAGAGSGKTRALTYRIAHLIRYHQVDPENILAVTFTNKAAREMKERIERIF 79 >gi|325127936|gb|EGC50839.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis N1568] Length = 1010 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L + +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 AW--SHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130 + + L D+ LS I + +K D + R LI L+ G Sbjct: 81 SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + L+ Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178 >gi|320353212|ref|YP_004194551.1| UvrD/REP helicase [Desulfobulbus propionicus DSM 2032] gi|320121714|gb|ADW17260.1| UvrD/REP helicase [Desulfobulbus propionicus DSM 2032] Length = 1095 Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A G+GKTH LV RV R + P T+ +T T AAAE+ R+ E Sbjct: 487 VQAGPGTGKTHTLVSRVRRTAGRSTRPCTV--ITFTNKAAAEVRERLGE 533 >gi|300118924|ref|ZP_07056635.1| ATP-dependent DNA helicase PcrA [Bacillus cereus SJ1] gi|298723540|gb|EFI64271.1| ATP-dependent DNA helicase PcrA [Bacillus cereus SJ1] Length = 747 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75 >gi|261838752|gb|ACX98518.1| DNA helicase II [Helicobacter pylori 51] Length = 681 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78 +++++ AS + A AGSGKT L R+ L+ A PS L LT T A+ EM Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEM 71 Query: 79 SHRVLEII 86 R L+++ Sbjct: 72 QERALKLL 79 >gi|229021877|ref|ZP_04178447.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1272] gi|228739423|gb|EEL89849.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1272] Length = 747 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75 >gi|229182687|ref|ZP_04309928.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BGSC 6E1] gi|228600772|gb|EEK58351.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BGSC 6E1] Length = 749 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75 >gi|228931796|ref|ZP_04094692.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827776|gb|EEM73514.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 747 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75 >gi|71903614|ref|YP_280417.1| DNA helicase II [Streptococcus pyogenes MGAS6180] gi|139473666|ref|YP_001128382.1| DNA helicase II [Streptococcus pyogenes str. Manfredo] gi|71802709|gb|AAX72062.1| DNA helicase II [Streptococcus pyogenes MGAS6180] gi|134271913|emb|CAM30151.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes str. Manfredo] Length = 772 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R L + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALSLNPA 78 >gi|76801117|ref|YP_326125.1| helicase [Natronomonas pharaonis DSM 2160] gi|76556982|emb|CAI48556.1| probable helicase [Natronomonas pharaonis DSM 2160] Length = 613 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 GSGKT L+ RV +L + +L +++T+AAAAE+ R+ E Sbjct: 12 GGPGSGKTTALLDRVDEMLDDGVDVNDILVVSYTRAAAAEVRERLAE 58 >gi|319765417|ref|YP_004130918.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC52] gi|317110283|gb|ADU92775.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC52] Length = 724 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT +L R+ L+ P +L +T T AA EM RV Sbjct: 29 IMAGAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKAAREMKERV 76 >gi|311029280|ref|ZP_07707370.1| ATP-dependent DNA helicase PcrA [Bacillus sp. m3-13] Length = 767 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ P +L +T T AA EM RV +++ Sbjct: 29 IMAGAGSGKTKVLTHRIAYLMAEKQVAPWNILAITFTNKAAREMKERVEKLL 80 >gi|306827259|ref|ZP_07460546.1| ATP-dependent DNA helicase PcrA [Streptococcus pyogenes ATCC 10782] gi|304430406|gb|EFM33428.1| ATP-dependent DNA helicase PcrA [Streptococcus pyogenes ATCC 10782] Length = 772 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R L + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALSLNPA 78 >gi|301052017|ref|YP_003790228.1| ATP-dependent DNA helicase [Bacillus anthracis CI] gi|300374186|gb|ADK03090.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str. CI] Length = 747 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75 >gi|315585865|gb|ADU40246.1| excision endonuclease subunit UvrD [Helicobacter pylori 35A] Length = 681 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78 +++++ AS + A AGSGKT L R+ L+ A PS L LT T A+ EM Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEM 71 Query: 79 SHRVLEII 86 R L+++ Sbjct: 72 QERALKLL 79 >gi|297528689|ref|YP_003669964.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. C56-T3] gi|297251941|gb|ADI25387.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. C56-T3] Length = 724 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT +L R+ L+ P +L +T T AA EM RV Sbjct: 29 IMAGAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKAAREMKERV 76 >gi|225075585|ref|ZP_03718784.1| hypothetical protein NEIFLAOT_00599 [Neisseria flavescens NRL30031/H210] gi|224953007|gb|EEG34216.1| hypothetical protein NEIFLAOT_00599 [Neisseria flavescens NRL30031/H210] Length = 389 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 37/185 (20%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L +L +T TKAA AE+ R VL+++ Sbjct: 20 IEASAGTGKTYGIAALFTRLIVLEKKDIEKILVVTFTKAATAELKTRLRARLDEVLQVLN 79 Query: 88 AWSHLSD--EILSAEITKI---QGKKPN------------KSDMSKARHLLITILETP-- 128 L E +S + K + K P+ + D ++ H LI L+ Sbjct: 80 EIQTLGGKPEHISDGLNKYYEKEKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKAALS 139 Query: 129 --GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE--------AKKSTLA 178 + TIH FC+ +++ + ++D+ + + LI A +TLA Sbjct: 140 QFDNASIYTIHGFCQRVLRDYAFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATDATLA 199 Query: 179 SIMLD 183 ++ D Sbjct: 200 QLVFD 204 >gi|56418810|ref|YP_146128.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426] gi|56378652|dbj|BAD74560.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426] Length = 724 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT +L R+ L+ P +L +T T AA EM RV Sbjct: 29 IMAGAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKAAREMKERV 76 >gi|145636195|ref|ZP_01791865.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittHH] gi|145270717|gb|EDK10650.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae PittHH] Length = 343 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 24/142 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT+ + LRLLL + +L +T T+ A E+ ++ E IT Sbjct: 20 IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK----------VQTIH 137 D++++ T+ + N ++ H L I E LK + TIH Sbjct: 80 ---DAIDKLIAFAETQDKSAFKNDEFLTALCHDL-DIFEAIHRLKLAEQNMDLAAIYTIH 135 Query: 138 AFCEAIMQQFPLEANITSHFAI 159 FC ++ Q+ + I HF + Sbjct: 136 GFCRRMLMQYAFHSGI--HFNL 155 >gi|42779415|ref|NP_976662.1| ATP-dependent DNA helicase PcrA [Bacillus cereus ATCC 10987] gi|42735331|gb|AAS39270.1| ATP-dependent DNA helicase PcrA [Bacillus cereus ATCC 10987] Length = 747 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75 >gi|229194679|ref|ZP_04321472.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1293] gi|228588782|gb|EEK46807.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1293] Length = 753 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|261418602|ref|YP_003252284.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC61] gi|261375059|gb|ACX77802.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC61] Length = 725 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT +L R+ L+ P +L +T T AA EM RV Sbjct: 30 IMAGAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKAAREMKERV 77 >gi|167910323|ref|ZP_02497414.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei 112] Length = 673 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P + + R L + + TIHAFC+ Sbjct: 87 TGDDGGDPFIARLFETTLAPERGLDPQTA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|148826022|ref|YP_001290775.1| hypothetical protein CGSHiEE_05005 [Haemophilus influenzae PittEE] gi|148716182|gb|ABQ98392.1| hypothetical protein CGSHiEE_05005 [Haemophilus influenzae PittEE] Length = 1211 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 24/142 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT+ + LRLLL + +L +T T+ A E+ ++ E IT Sbjct: 20 IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK----------VQTIH 137 D++++ T+ + N ++ H L I E LK + TIH Sbjct: 80 ---DAIDKLIAFAETQDKSAFKNDEFLTALCHDL-DIFEAIHRLKLAEQNMDLAAIYTIH 135 Query: 138 AFCEAIMQQFPLEANITSHFAI 159 FC ++ Q+ + I HF + Sbjct: 136 GFCRRMLMQYAFHSGI--HFNL 155 >gi|148238576|ref|YP_001223963.1| UvrD/REP helicase [Synechococcus sp. WH 7803] gi|147847115|emb|CAK22666.1| UvrD/REP helicase [Synechococcus sp. WH 7803] Length = 795 Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 2/54 (3%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT L R+ L+ + A P+ +L +T T AA EM R LE++ A Sbjct: 24 VVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFTNKAAREMKER-LELLLA 76 >gi|119387000|ref|YP_918055.1| UvrD/REP helicase [Paracoccus denitrificans PD1222] gi|119377595|gb|ABL72359.1| ATP-dependent DNA helicase, Rep family [Paracoccus denitrificans PD1222] Length = 799 Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R+ LL L A P +L +T T AA EM R+ Sbjct: 54 AGAGTGKTRALTTRIAHLLNLGLARPGQILAVTFTNKAAREMKDRI 99 >gi|47569949|ref|ZP_00240614.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9241] gi|228983546|ref|ZP_04143751.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|47553395|gb|EAL11781.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9241] gi|228776142|gb|EEM24503.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 747 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75 >gi|319955254|ref|YP_004166521.1| uvrd/rep helicase [Cellulophaga algicola DSM 14237] gi|319423914|gb|ADV51023.1| UvrD/REP helicase [Cellulophaga algicola DSM 14237] Length = 794 Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 27/51 (52%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ +L LT T AA EM R+ I+ Sbjct: 43 VIAGAGSGKTRVLTYRIAYLMSLGIDSFNILALTFTNKAAREMKARIAAIV 93 >gi|291547104|emb|CBL20212.1| Superfamily I DNA and RNA helicases [Ruminococcus sp. SR1/5] Length = 760 Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI 85 + A AGSGKT +L R+ L+ +P +L +T T AA+EM RV +I Sbjct: 44 ILAGAGSGKTRVLTHRIAYLMEEKGVNPWNILAITFTNKAASEMRERVNKI 94 >gi|266623215|ref|ZP_06116150.1| ATP-dependent DNA helicase PcrA [Clostridium hathewayi DSM 13479] gi|288865014|gb|EFC97312.1| ATP-dependent DNA helicase PcrA [Clostridium hathewayi DSM 13479] Length = 614 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHR 81 V A GSGKT + R+ L + +PS +L +T TKAAA EM R Sbjct: 24 VLAGPGSGKTFTITHRIKYLTEECSVNPSGILVITFTKAAATEMKER 70 >gi|228469677|ref|ZP_04054645.1| putative ATP-dependent helicase [Porphyromonas uenonis 60-3] gi|228308696|gb|EEK17422.1| putative ATP-dependent helicase [Porphyromonas uenonis 60-3] Length = 1102 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 4/115 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS--TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 A+AG+GKTH + + LR +L S + +T T A E+ R + ++ + E Sbjct: 13 ASAGAGKTHTMTEAFLRHVLQYPESSYQEVQAVTFTNLATRELKERFFKELSTLAVAPQE 72 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 S +K ++AR L +IL GL+V+TI +F + I+ +E Sbjct: 73 --SPFYGTFNKHYSDKQLSTRARTALQSILFDYDGLRVKTIDSFFQDIIHALAIE 125 >gi|222094063|ref|YP_002528120.1| ATP-dependent DNA helicase [Bacillus cereus Q1] gi|229137129|ref|ZP_04265748.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST26] gi|221238118|gb|ACM10828.1| ATP-dependent DNA helicase [Bacillus cereus Q1] gi|228646301|gb|EEL02516.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST26] Length = 747 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75 >gi|205372453|ref|ZP_03225266.1| PcrA [Bacillus coahuilensis m4-4] Length = 739 Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ L++ P +L +T T AA EM R+ +I+ Sbjct: 31 AGAGSGKTRVLTHRIAYLMVEKQIAPYNILAITFTNKAAREMKERISKIL 80 >gi|196034734|ref|ZP_03102142.1| ATP-dependent DNA helicase PcrA [Bacillus cereus W] gi|218901494|ref|YP_002449328.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH820] gi|228925549|ref|ZP_04088638.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944101|ref|ZP_04106480.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195992777|gb|EDX56737.1| ATP-dependent DNA helicase PcrA [Bacillus cereus W] gi|218539393|gb|ACK91791.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH820] gi|228815490|gb|EEM61732.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228834027|gb|EEM79575.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 751 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|49479079|ref|YP_034625.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|225862343|ref|YP_002747721.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB102] gi|49330635|gb|AAT61281.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|225788890|gb|ACO29107.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB102] Length = 753 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|78065794|ref|YP_368563.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. 383] gi|77966539|gb|ABB07919.1| Exodeoxyribonuclease V, beta subunit [Burkholderia sp. 383] Length = 1236 Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 7/118 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 26 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 85 Query: 95 ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + + + + D A + L + TIHAFC+ +Q+ Sbjct: 86 TGDDGGDPFIERLLETTLGEDGTLDPETAAKRIRRALRAFDQAAIHTIHAFCQRALQE 143 >gi|149366585|ref|ZP_01888619.1| putative helicase IV [Yersinia pestis CA88-4125] gi|165924415|ref|ZP_02220247.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis str. F1991016] gi|165940131|ref|ZP_02228664.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis str. IP275] gi|167419681|ref|ZP_02311434.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167467236|ref|ZP_02331940.1| DNA helicase IV [Yersinia pestis FV-1] gi|218928586|ref|YP_002346461.1| DNA helicase IV [Yersinia pestis CO92] gi|229841415|ref|ZP_04461574.1| DNA helicase IV [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843525|ref|ZP_04463668.1| DNA helicase IV [Yersinia pestis biovar Orientalis str. India 195] gi|115347197|emb|CAL20091.1| putative helicase IV [Yersinia pestis CO92] gi|149290959|gb|EDM41034.1| putative helicase IV [Yersinia pestis CA88-4125] gi|165911954|gb|EDR30598.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis str. IP275] gi|165923475|gb|EDR40607.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis str. F1991016] gi|166962422|gb|EDR58443.1| helicase IV (75 kDa helicase) [Yersinia pestis biovar Orientalis str. MG05-1020] gi|229689133|gb|EEO81196.1| DNA helicase IV [Yersinia pestis biovar Orientalis str. India 195] gi|229697781|gb|EEO87828.1| DNA helicase IV [Yersinia pestis biovar Orientalis str. PEXU2] Length = 661 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 S V A AGSGKT +LV R LL N A P +L L + AA EM+ R+ Sbjct: 211 SVLVLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNSRI 261 >gi|260222507|emb|CBA32139.1| ATP-dependent DNA helicase rep [Curvibacter putative symbiont of Hydra magnipapillata] Length = 709 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ ++ RL+ + + +T T AAAEM R +I Sbjct: 27 VLAGAGSGKTRVITHKIARLIQMGMPANRIAAITFTNKAAAEMRERAKHLI 77 >gi|167634189|ref|ZP_02392511.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0442] gi|170688392|ref|ZP_02879601.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0465] gi|254742291|ref|ZP_05199977.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Kruger B] gi|167530503|gb|EDR93218.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0442] gi|170667724|gb|EDT18478.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0465] Length = 751 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|49183319|ref|YP_026571.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Sterne] gi|65317729|ref|ZP_00390688.1| COG0210: Superfamily I DNA and RNA helicases [Bacillus anthracis str. A2012] gi|165871400|ref|ZP_02216048.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0488] gi|167640142|ref|ZP_02398409.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0193] gi|170708734|ref|ZP_02899171.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0389] gi|177653645|ref|ZP_02935784.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0174] gi|190567423|ref|ZP_03020337.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis Tsiankovskii-I] gi|227812969|ref|YP_002812978.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. CDC 684] gi|229599888|ref|YP_002864922.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0248] gi|254756067|ref|ZP_05208096.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Vollum] gi|49177246|gb|AAT52622.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Sterne] gi|164712884|gb|EDR18413.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0488] gi|167511953|gb|EDR87332.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0193] gi|170126313|gb|EDS95203.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0389] gi|172081225|gb|EDT66300.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0174] gi|190561550|gb|EDV15521.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis Tsiankovskii-I] gi|227005824|gb|ACP15567.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. CDC 684] gi|229264296|gb|ACQ45933.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0248] Length = 751 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|330860768|emb|CBX71057.1| helicase IV [Yersinia enterocolitica W22703] Length = 373 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +LV R LL N A P +L L + AA EM+ R+ Sbjct: 214 VLAGAGSGKTSVLVARAGWLLRRNEALPEQILLLAFGRQAADEMNSRI 261 >gi|325279393|ref|YP_004251935.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712] gi|324311202|gb|ADY31755.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712] Length = 1054 Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 17/166 (10%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L R + A+ A +L +T T A EM R II L+D Sbjct: 7 ASAGSGKTFALTLEYFRTIFASPAEYKNILAVTFTNKATEEMKSR---IINELHRLADGK 63 Query: 97 LS--AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 S E K + ++ ++A L +L G L V TI F + I++ F E I Sbjct: 64 TSDYGEALKQEFGFTDEQLKNRAVLLRTMLLHDYGRLAVTTIDRFFQRIIKAFTRELGIF 123 Query: 155 SHFAIADE------EQSKKLIEEAK-----KSTLASIMLDNNEELK 189 + + + + K++++ K K+ ++ +M N EE K Sbjct: 124 PGYNVELDSDFVLLKAVDKVMQQVKDNPGLKNWISELMSSNVEEGK 169 >gi|311696604|gb|ADP99477.1| exodeoxyribonuclease V, beta subunit [marine bacterium HP15] Length = 1234 Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 21/161 (13%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHP----------STLLCLTHTKAAAAEMSHRV 82 SA + A+AG+GKT + +RL+L LL +T T+AA E+ R+ Sbjct: 22 SALIEASAGTGKTFTIAILYVRLVLGQGQSPDSPLQNLLPPNLLVVTFTEAATKELRDRI 81 Query: 83 LEIIT----AWSHLSDE----ILSAEITKIQGKK-PNKSDMSKARHLLITILETPGGLKV 133 +T +S DE +A I +++ + P+ + + R L+ E V Sbjct: 82 RTRLTQAAEVFSDAPDEPNPPAETALIYQLRDESYPDPASWPECRKKLLLAAEWMDEAAV 141 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 TIH+FC ++ + ++ S F + E +L++E + Sbjct: 142 STIHSFCNRMLSEHAFDSG--SLFKLTLETDQSELLDEVAR 180 >gi|239995612|ref|ZP_04716136.1| exodeoxyribonuclease V, beta subunit [Alteromonas macleodii ATCC 27126] Length = 1321 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 15/138 (10%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVL----EIITAWS 90 + A+AG+GKT + + LRLLL +L +T TKAA E+ R+ E + W Sbjct: 44 IEASAGTGKTFNITRLYLRLLLEKKLTVKEILVMTFTKAATEEIKGRIAATLREALLIWQ 103 Query: 91 HLSDEILSAEITKIQGKKP------NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 D EI G P N D+ ++ LL V TIH FC+ ++ Sbjct: 104 QAKDN--GNEIDS--GCDPVYQYLFNSCDIDESLALLKAAQLELDEASVFTIHGFCQHVI 159 Query: 145 QQFPLEANITSHFAIADE 162 Q + + ++ Sbjct: 160 TQLAFNSGFAMSLNLGND 177 >gi|218557861|ref|YP_002390774.1| DNA helicase IV [Escherichia coli S88] gi|218364630|emb|CAR02316.1| DNA helicase IV [Escherichia coli S88] Length = 684 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMHERIRE 263 >gi|253698715|ref|YP_003019904.1| UvrD/REP helicase [Geobacter sp. M21] gi|251773565|gb|ACT16146.1| UvrD/REP helicase [Geobacter sp. M21] Length = 731 Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 9/75 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV--------LEII 86 V A AGSGKT ++V R+ L+ P+ +L +T T AA EM R+ L +I Sbjct: 24 VLAGAGSGKTRVIVHRIAYLIHERGVPAWQILGVTFTNKAAGEMRERLAHMLGDGELPLI 83 Query: 87 TAWSHLSDEILSAEI 101 + + IL +EI Sbjct: 84 STFHSTCARILRSEI 98 >gi|156095560|ref|XP_001613815.1| UvrD/REP helicase [Plasmodium vivax SaI-1] gi|148802689|gb|EDL44088.1| UvrD/REP helicase, putative [Plasmodium vivax] Length = 1048 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 12/136 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 R+ + A GSGKT L R++R ++ +++C+T T AA ++ ++ + + Sbjct: 34 NRNVCIIACPGSGKTSTLTARIIRSIIEKK--KSVVCITFTNYAANDLKEKITKKVNC-- 89 Query: 91 HLSDEILSAEI-TKIQGKKPN--KSDMSKARHLL--ITILETPGGLKVQTIHAFCEAIMQ 145 L D L ++ K+ K + K D S H + +L T + + TIH+FC ++ Sbjct: 90 -LIDLYLDTDVRCKLFAGKTSSRKFDTSSKLHSKSKLKVLHTV--MFIGTIHSFCRYLLF 146 Query: 146 QFPLEANITSHFAIAD 161 ++ I S F ++ Sbjct: 147 KYKGPFKILSDFICSN 162 >gi|197116476|ref|YP_002136903.1| ATP-dependent DNA helicase UvrD/REP [Geobacter bemidjiensis Bem] gi|197085836|gb|ACH37107.1| ATP-dependent DNA helicase UvrD/REP [Geobacter bemidjiensis Bem] Length = 732 Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 9/75 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV--------LEII 86 V A AGSGKT ++V R+ L+ P+ +L +T T AA EM R+ L +I Sbjct: 24 VLAGAGSGKTRVIVHRIAYLIHERGVPAWQILGVTFTNKAAGEMRERLAHMLGDGELPLI 83 Query: 87 TAWSHLSDEILSAEI 101 + + IL +EI Sbjct: 84 STFHSTCARILRSEI 98 >gi|83951554|ref|ZP_00960286.1| DNA helicase II, putative [Roseovarius nubinhibens ISM] gi|83836560|gb|EAP75857.1| DNA helicase II, putative [Roseovarius nubinhibens ISM] Length = 782 Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R+ LL +A P +L +T T AA EM RV Sbjct: 50 AGAGTGKTKALTSRIAHLLSTGSARPDEILAVTFTNKAAREMKDRV 95 >gi|95929099|ref|ZP_01311844.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684] gi|95135000|gb|EAT16654.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684] Length = 676 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 11/83 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE----------I 85 V A AGSGKT ++ R+ LL ++ LT T AA EM RV+E Sbjct: 23 VLAGAGSGKTRVITCRIGH-LLERVPAEQIVALTFTNKAAREMRDRVVEQVGRGKAKGLT 81 Query: 86 ITAWSHLSDEILSAEITKIQGKK 108 I+ + L IL EI ++ KK Sbjct: 82 ISTFHSLGVRILRQEIEQLGYKK 104 >gi|312945475|gb|ADR26302.1| DNA helicase IV [Escherichia coli O83:H1 str. NRG 857C] Length = 684 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMHERIRE 263 >gi|308183581|ref|YP_003927708.1| DNA helicase II [Helicobacter pylori PeCan4] gi|308065766|gb|ADO07658.1| DNA helicase II [Helicobacter pylori PeCan4] Length = 681 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78 +++++ AS + A AGSGKT L R+ L+ A PS L LT T A+ EM Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEM 71 Query: 79 SHRVLEII 86 R L+++ Sbjct: 72 QERALKLL 79 >gi|307328515|ref|ZP_07607689.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113] gi|306885783|gb|EFN16795.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113] Length = 1232 Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 33/148 (22%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT ++ RV+ L+ P +L LT T AA E++ RV Sbjct: 46 IVAGAGSGKTTVMAARVVWLVGTGQVAPDRVLGLTFTNKAAGELAERVRR---------- 95 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +++A I Q P ++ E G + T HAF +++ L + Sbjct: 96 ALVTAGIVD-QDPDPGATE------------EAAGEPVISTYHAFAGQLLKDHGLRVGL- 141 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIML 182 E S +L+ +A + LA+ +L Sbjct: 142 --------EPSARLLADATRFQLAARVL 161 >gi|317056307|ref|YP_004104774.1| UvrD/REP helicase [Ruminococcus albus 7] gi|315448576|gb|ADU22140.1| UvrD/REP helicase [Ruminococcus albus 7] Length = 780 Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 24/178 (13%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA--------AAEMSHRVLEII 86 + A AGSGKT +LV R+ ++ +A+ +T T +AA + R+ +I Sbjct: 36 ILAGAGSGKTTVLVNRIANMIHFGDAYNTTGQIFTDEEAAFIKDYAEGRTDDGKRLAAVI 95 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKVQTIHAFCEAIMQ 145 IL+ T NK+ + + + IL G G+ T H+ C I++ Sbjct: 96 GVRQVRPWNILAITFT-------NKA-AGELKERIEKILGDEGRGIVAATFHSACVRILR 147 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + T FAI D + SK++I+ A +S LD +E++ + EIS+ +D Sbjct: 148 RECGNIGFTPSFAIYDTDDSKRVIKAAMRS------LDIDEKMFPVKTVMSEISHAKD 199 >gi|289705135|ref|ZP_06501539.1| UvrD/REP helicase [Micrococcus luteus SK58] gi|289558163|gb|EFD51450.1| UvrD/REP helicase [Micrococcus luteus SK58] Length = 1176 Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77 T+ + + + P V A AGSGKT + RV+ L+AN P +L +T T+ AA E Sbjct: 37 TQEQAEVVTAPLTPRLVLAGAGSGKTATMADRVV-WLVANGLVRPDEVLGVTFTRKAAGE 95 Query: 78 MSHRV 82 ++ R+ Sbjct: 96 LAERI 100 >gi|257092005|ref|YP_003165646.1| ATP-dependent DNA helicase, RecQ family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044529|gb|ACV33717.1| ATP-dependent DNA helicase, RecQ family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1741 Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 46/81 (56%), Gaps = 2/81 (2%) Query: 8 QEHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65 Q + +++++ + +++A + + + V A GSGKT +LV R+ L+ + +P + Sbjct: 1091 QSWHDIVEVLNNRQQREIVADERESTNVLVLAGPGSGKTRVLVHRIAYLIRVRRENPHGI 1150 Query: 66 LCLTHTKAAAAEMSHRVLEII 86 L L + + AA ++ R+ E+I Sbjct: 1151 LALAYNRHAAVQIRQRLGELI 1171 >gi|162138455|ref|YP_540044.2| DNA helicase IV [Escherichia coli UTI89] gi|306812591|ref|ZP_07446784.1| DNA helicase IV [Escherichia coli NC101] gi|294493600|gb|ADE92356.1| helicase IV [Escherichia coli IHE3034] gi|305853354|gb|EFM53793.1| DNA helicase IV [Escherichia coli NC101] gi|307627618|gb|ADN71922.1| DNA helicase IV [Escherichia coli UM146] gi|323953335|gb|EGB49201.1| UvrD/REP helicase [Escherichia coli H252] gi|323958262|gb|EGB53971.1| UvrD/REP helicase [Escherichia coli H263] Length = 684 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMHERIRE 263 >gi|30260477|ref|NP_842854.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Ames] gi|47525567|ref|YP_016916.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. 'Ames Ancestor'] gi|254739087|ref|ZP_05196789.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Western North America USA6153] gi|254761884|ref|ZP_05213733.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Australia 94] gi|30253845|gb|AAP24340.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Ames] gi|47500715|gb|AAT29391.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. 'Ames Ancestor'] Length = 747 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75 >gi|303248300|ref|ZP_07334562.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ] gi|302490325|gb|EFL50237.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ] Length = 1078 Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 15/63 (23%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PST-------------LLCLTHTKAAAAEMSH 80 V A+AGSGKTH L +R + L L A P + +L +T T AAAEM Sbjct: 5 VKASAGSGKTHALTERFISLALRTARNLPRSCAGSLEAGYALPEILAVTFTNKAAAEMRE 64 Query: 81 RVL 83 RV Sbjct: 65 RVF 67 >gi|294787985|ref|ZP_06753229.1| putative ATP-dependent DNA helicase, UvrD/REP family [Simonsiella muelleri ATCC 29453] gi|294484278|gb|EFG31961.1| putative ATP-dependent DNA helicase, UvrD/REP family [Simonsiella muelleri ATCC 29453] Length = 1602 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 Q++ D ++ V A GSGKT +LV ++ L L + LL LT ++AAA E R+ Sbjct: 1056 QIIQDDNSKHIVVFAAPGSGKTRVLVHKLASLYQLEDVKHEQLLMLTFSRAAAYEFKSRL 1115 Query: 83 LEII 86 +++ Sbjct: 1116 FKLM 1119 >gi|254686688|ref|ZP_05150546.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. CNEVA-9066] gi|254724764|ref|ZP_05186547.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A1055] Length = 747 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 30 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 75 >gi|331657029|ref|ZP_08357991.1| helicase IV (75 kDa helicase) [Escherichia coli TA206] gi|222032686|emb|CAP75425.1| Helicase IV [Escherichia coli LF82] gi|331055277|gb|EGI27286.1| helicase IV (75 kDa helicase) [Escherichia coli TA206] Length = 684 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMHERIRE 263 >gi|324009894|gb|EGB79113.1| UvrD/REP helicase [Escherichia coli MS 57-2] Length = 715 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMHERIRE 294 >gi|308070911|ref|YP_003872516.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681] gi|305860190|gb|ADM71978.1| Superfamily I DNA and RNA helicase [Paenibacillus polymyxa E681] Length = 600 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82 S V A GSGKT +L +++RLL S L C+T+ +AAA E + R+ Sbjct: 26 STVVIAGPGSGKTTVLTLKIMRLLQEEIPLSRGLACVTYNRAAAKEFNDRL 76 >gi|260914127|ref|ZP_05920600.1| exodeoxyribonuclease V beta subunit [Pasteurella dagmatis ATCC 43325] gi|260631760|gb|EEX49938.1| exodeoxyribonuclease V beta subunit [Pasteurella dagmatis ATCC 43325] Length = 1234 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 16/143 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-----HPST---LLCLTHTKAAAAEMSHRVLEII- 86 + A+AG+GKT+ + LRLLL P T +L +T T+AA E+ R+ E I Sbjct: 21 IEASAGTGKTYTIGSLYLRLLLQAGVENFPLPLTVEQILVVTFTEAATNELKGRIRERIH 80 Query: 87 ------TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 A+ + LS E +Q + D+ A L ++ + TIH FC Sbjct: 81 QTKQAFIAYKEQGESALSEE-PFLQELIQHIEDIDIAIQRLKIAEQSMDLAAIYTIHGFC 139 Query: 141 EAIMQQFPLEANITSHFAIADEE 163 ++ Q+ + + + + +E Sbjct: 140 RRMLMQYAFNSGVHFNLELVKDE 162 >gi|212696674|ref|ZP_03304802.1| hypothetical protein ANHYDRO_01215 [Anaerococcus hydrogenalis DSM 7454] gi|212676405|gb|EEB36012.1| hypothetical protein ANHYDRO_01215 [Anaerococcus hydrogenalis DSM 7454] Length = 860 Score = 37.7 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMS 79 + + L+ +D A V A G+GKT +VQ+++ L+ P+ +L T TK AA E+ Sbjct: 4 EKQNLIVNDSKYPAAVLAGPGTGKTFTIVQKIISLIKNEGLSPNKILVTTFTKKAANELI 63 Query: 80 HRV 82 RV Sbjct: 64 ERV 66 >gi|169335318|ref|ZP_02862511.1| hypothetical protein ANASTE_01730 [Anaerofustis stercorihominis DSM 17244] gi|169258056|gb|EDS72022.1| hypothetical protein ANASTE_01730 [Anaerofustis stercorihominis DSM 17244] Length = 741 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 39/134 (29%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT ++ R+ ++ A P +L LT T AA EM R+ + Sbjct: 26 AGAGSGKTRTIIHRIAYIIENGYAKPWEILALTFTNKAAGEMRERIDSMGI--------- 76 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 P SD + + T H+ C I++ TS+ Sbjct: 77 ------------PFTSD-----------------IWMGTFHSICARILRIEGHNLGFTSN 107 Query: 157 FAIADEEQSKKLIE 170 F+I D++ +K++++ Sbjct: 108 FSIYDDDDTKRVVK 121 >gi|15618648|ref|NP_224934.1| exodeoxyribonuclease V, Beta [Chlamydophila pneumoniae CWL029] gi|4377044|gb|AAD18877.1| Exodeoxyribonuclease V, Beta [Chlamydophila pneumoniae CWL029] Length = 1050 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 2/115 (1%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 ++ A+AG+GKT + Q VLR L+ + H L +T T A+ E+ R+ + + Sbjct: 18 FLEASAGTGKTFTIEQIVLRALIEGSLTHVEHALAITFTNASTNELKVRIKDNLAQTLRE 77 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 +L+++ + ++ + + L T + + TIH FC +++Q+ Sbjct: 78 LKAVLNSQPASLPTYLDINCNVKQIYMQVRNALATLDQMSLFTIHGFCNFVLEQY 132 >gi|15836270|ref|NP_300794.1| exodeoxyribonuclease V, beta [Chlamydophila pneumoniae J138] gi|33242097|ref|NP_877038.1| exodeoxyribonuclease V 135K chain [Chlamydophila pneumoniae TW-183] gi|12644495|sp|Q9Z7G7|EX5B_CHLPN RecName: Full=Exodeoxyribonuclease V beta chain gi|8979110|dbj|BAA98945.1| exodeoxyribonuclease V, beta [Chlamydophila pneumoniae J138] gi|33236607|gb|AAP98695.1| exodeoxyribonuclease V 135K chain [Chlamydophila pneumoniae TW-183] Length = 1050 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 2/115 (1%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 ++ A+AG+GKT + Q VLR L+ + H L +T T A+ E+ R+ + + Sbjct: 18 FLEASAGTGKTFTIEQIVLRALIEGSLTHVEHALAITFTNASTNELKVRIKDNLAQTLRE 77 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 +L+++ + ++ + + L T + + TIH FC +++Q+ Sbjct: 78 LKAVLNSQPASLPTYLDINCNVKQIYMQVRNALATLDQMSLFTIHGFCNFVLEQY 132 >gi|322411887|gb|EFY02795.1| DNA helicase II [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 772 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R L + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALALNPA 78 >gi|315296259|gb|EFU55566.1| UvrD/REP helicase [Escherichia coli MS 16-3] Length = 715 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMHERIRE 294 >gi|229159445|ref|ZP_04287463.1| ATP-dependent DNA helicase pcrA [Bacillus cereus R309803] gi|228624016|gb|EEK80824.1| ATP-dependent DNA helicase pcrA [Bacillus cereus R309803] Length = 754 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|296118831|ref|ZP_06837407.1| ATP-dependent DNA helicase [Corynebacterium ammoniagenes DSM 20306] gi|295968320|gb|EFG81569.1| ATP-dependent DNA helicase [Corynebacterium ammoniagenes DSM 20306] Length = 692 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +DL + +++ A+ P + A AG+GKT + R+ ++ P +L +T T Sbjct: 6 LDLEALDDDQRVAATAPRGPVCILAGAGTGKTRTITYRIAHMVDQGFVSPQRVLAVTFTS 65 Query: 73 AAAAEMSHRVLEI 85 AA EM R+L + Sbjct: 66 KAAGEMRDRLLSM 78 >gi|294629557|ref|ZP_06708117.1| conserved hypothetical protein [Streptomyces sp. e14] gi|292832890|gb|EFF91239.1| conserved hypothetical protein [Streptomyces sp. e14] Length = 634 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 7/53 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP------STLLCLTHTKAAAAEMSHRV 82 V+A AG+GKTH LV+R L L + P + +L LT ++AAA E+ R+ Sbjct: 29 VTAGAGAGKTHTLVRR-LDALCGHEDPEEALEATDILVLTFSRAAARELRERI 80 >gi|258510684|ref|YP_003184118.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477410|gb|ACV57729.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 756 Score = 37.7 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 S+ + +++ + E + A+D V A AGSGKT +L +R+ L+ P +L +T Sbjct: 8 SDILKGLNEKQREAVTATDG--PVLVIAGAGSGKTSVLTRRIAYLIAERRVPPWAILAIT 65 Query: 70 HTKAAAAEMSHRVLEII 86 T AA EM R+ ++ Sbjct: 66 FTNKAAREMEERIERLV 82 >gi|117623172|ref|YP_852085.1| DNA helicase IV [Escherichia coli APEC O1] gi|237707053|ref|ZP_04537534.1| HelD [Escherichia sp. 3_2_53FAA] gi|91071632|gb|ABE06513.1| DNA helicase IV [Escherichia coli UTI89] gi|115512296|gb|ABJ00371.1| HelD [Escherichia coli APEC O1] gi|226898263|gb|EEH84522.1| HelD [Escherichia sp. 3_2_53FAA] gi|315287593|gb|EFU46999.1| UvrD/REP helicase [Escherichia coli MS 110-3] Length = 715 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 245 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMHERIRE 294 >gi|328955224|ref|YP_004372557.1| UvrD/REP helicase [Coriobacterium glomerans PW2] gi|328455548|gb|AEB06742.1| UvrD/REP helicase [Coriobacterium glomerans PW2] Length = 1215 Score = 37.7 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 37/148 (25%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEIITAW 89 +VSA AGSGKT L +R+L L + P +L +T T+ AA E+ RV Sbjct: 22 FVSAGAGSGKTFTLTRRILWALSERSGPYLDSLDQVLAITFTRDAAQEIRERVR------ 75 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + L +E + E I + TIH C +++ L Sbjct: 76 AALIEEGMRTEALAIDDA------------------------WISTIHGMCARMLRAHAL 111 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTL 177 E I F+I + + +L++ A + L Sbjct: 112 ELGIDPEFSIL--QDTDELMDAAVEHVL 137 >gi|317968538|ref|ZP_07969928.1| UvrD/REP helicase [Synechococcus sp. CB0205] Length = 792 Score = 37.7 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 20/145 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ ++ + P+ LL +T T AA EM R LE+ Sbjct: 24 VVAGAGSGKTRALTHRIAHMIGQHGVDPAELLAVTFTNKAAREMKER-LEL--------- 73 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITIL--ETPGGLKVQTIHAFCEAIMQ------Q 146 +L+ ++ + Q +P + + + L + + E L + T HA +++ + Sbjct: 74 -LLAQKLAQSQFGQPWSTLAAVDQRQLRSRIYREVIKDLWIGTFHALFARLLRFDIDKFR 132 Query: 147 FPLEANITSHFAIADEEQSKKLIEE 171 P T F+I DE ++ L++E Sbjct: 133 DPEGLTWTRQFSIYDEGDTQSLVKE 157 >gi|91782971|ref|YP_558177.1| exodeoxyribonuclease V, beta subunit [Burkholderia xenovorans LB400] gi|91686925|gb|ABE30125.1| Exodeoxyribonuclease V, beta subunit [Burkholderia xenovorans LB400] Length = 1230 Score = 37.7 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 9/119 (7%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL N + +L +T TKAA AE+ R+ + A H + Sbjct: 28 IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRSRL-AELHRAI 86 Query: 95 EILSAEITKIQGK------KPNKS-DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 E+ G+ P + A ++ L T + TIHAFC+ +Q+ Sbjct: 87 EMDDDGGDPFIGRLFETTLAPERGIGRESALKVVRRALRTFDQAAIHTIHAFCQRALQE 145 >gi|71909490|ref|YP_287077.1| ATP-dependent DNA helicase Rep [Dechloromonas aromatica RCB] gi|71849111|gb|AAZ48607.1| ATP-dependent DNA helicase Rep [Dechloromonas aromatica RCB] Length = 663 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 V A AGSGKT ++ Q++ L+ P + +T T AA EM R+ +I++ Sbjct: 21 VLAGAGSGKTRVITQKIAYLVQDCGFQPRNIAAITFTNKAAKEMQERIGKILS 73 >gi|16752303|ref|NP_444560.1| exodeoxyribonuclease V, beta chain, putative [Chlamydophila pneumoniae AR39] gi|7188945|gb|AAF37903.1| exodeoxyribonuclease V, beta chain, putative [Chlamydophila pneumoniae AR39] Length = 1050 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 2/115 (1%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 ++ A+AG+GKT + Q VLR L+ + H L +T T A+ E+ R+ + + Sbjct: 18 FLEASAGTGKTFTIEQIVLRALIEGSLTHVEHALAITFTNASTNELKVRIKDNLAQTLRE 77 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 +L+++ + ++ + + L T + + TIH FC +++Q+ Sbjct: 78 LKAVLNSQPASLPTYLDINCNVKQIYMQVRNALATLDQMSLFTIHGFCNFVLEQY 132 >gi|297380667|gb|ADI35554.1| DNA helicase II [Helicobacter pylori v225d] Length = 681 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78 +++++ AS + A AGSGKT L R+ L+ A PS L LT T A+ EM Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEM 71 Query: 79 SHRVLEII 86 R L+++ Sbjct: 72 QERALKLL 79 >gi|114778866|ref|ZP_01453665.1| DNA helicase II [Mariprofundus ferrooxydans PV-1] gi|114550901|gb|EAU53466.1| DNA helicase II [Mariprofundus ferrooxydans PV-1] Length = 699 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT ++ R+ L+ A P +L +T T AAAE+ R+ E+I Sbjct: 23 AGAGSGKTRTIIHRIGHLISARGVAPHRILAVTFTNKAAAELKSRLSELI 72 >gi|317182683|dbj|BAJ60467.1| DNA helicase II [Helicobacter pylori F57] Length = 681 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78 +++++ AS + A AGSGKT L R+ L+ A PS L LT T A+ EM Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEM 71 Query: 79 SHRVLEII 86 R L+++ Sbjct: 72 QERALKLL 79 >gi|257464157|ref|ZP_05628538.1| DNA helicase II [Fusobacterium sp. D12] gi|317061673|ref|ZP_07926158.1| DNA helicase II [Fusobacterium sp. D12] gi|313687349|gb|EFS24184.1| DNA helicase II [Fusobacterium sp. D12] Length = 901 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 V A GSGKT LV+R + LL PS +L T T+ AA E+ R+ Sbjct: 19 VIAGPGSGKTKTLVERSIHLLAEKKIEPSQILLSTFTEKAARELRMRI 66 >gi|251782494|ref|YP_002996796.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391123|dbj|BAH81582.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127381|gb|ADX24678.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 772 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R L + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALALNPA 78 >gi|255713190|ref|XP_002552877.1| KLTH0D03498p [Lachancea thermotolerans] gi|238934257|emb|CAR22439.1| KLTH0D03498p [Lachancea thermotolerans] Length = 1090 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 D T++ V A G+GKT +L RV LLL +P ++ T TK A EM R+ Sbjct: 19 DHTKALQVVAGPGTGKTKVLTTRVAYLLLEKGINPGDIIITTFTKKATLEMIERL 73 >gi|229845144|ref|ZP_04465279.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 6P18H1] gi|229811980|gb|EEP47674.1| exodeoxyribonuclease V beta chain [Haemophilus influenzae 6P18H1] Length = 1202 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 28/139 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT+ + LRLLL + +L +T T+ A E+ ++ E IT Sbjct: 20 IEASAGTGKTYTIGSLYLRLLLKAGENNFSRPLNVEEILVVTFTEMATEELKKKIRERIT 79 Query: 88 AWSHLSDEI--LSAEITKIQGKKPNKS-----------DMSKARHLLITILETPGGLKVQ 134 D I L+A K Q K K+ D+ +A H L + + Sbjct: 80 ------DAINKLTA-FAKTQDKSAFKNDEFLTALCHDLDIFEAIHRLKLAEQNMDLAAIY 132 Query: 135 TIHAFCEAIMQQFPLEANI 153 TIH FC ++ Q+ + I Sbjct: 133 TIHGFCRRMLMQYAFHSGI 151 >gi|225181788|ref|ZP_03735226.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1] gi|225167562|gb|EEG76375.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1] Length = 694 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT ++ R+ L+ A P +L LT T AA E+ R+ E++ Sbjct: 5 AGAGSGKTRVITHRIAHLIQQRLAAPWEILALTFTNKAAEELRGRIEELV 54 >gi|194687506|ref|XP_001790073.1| PREDICTED: hypothetical protein [Bos taurus] Length = 819 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 14/131 (10%) Query: 7 FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTL 65 F + E+ L + + ++ D R+ V+A AGSGKT +V +V LL + P + Sbjct: 198 FFDQVESTPLTDEQRVSSIIFED--RNLLVAA-AGSGKTSTIVGKVGYALLTGLYKPEEI 254 Query: 66 LCLTHTKAAAAEMSHRV---LEIITAWSHLSDEILSAE------ITKIQGKKPNKS-DMS 115 L L K A E+S R+ L+ I + S E L+ I K GK P+ S D Sbjct: 255 LVLAFNKNAGEELSERISFRLKDILSNFDTSVEALNFHKFGVKVIGKATGKSPSVSNDAG 314 Query: 116 KARHLLITILE 126 K + LL I++ Sbjct: 315 KPQALLNRIIQ 325 >gi|219848623|ref|YP_002463056.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485] gi|219542882|gb|ACL24620.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485] Length = 646 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 P V A AGSGKT +L R+ L+ PS +L +T T AA EM R+ Sbjct: 18 PIGPVLVKAGAGSGKTRVLTLRIAYLITHYGVSPSQILAVTFTNKAAREMRERL 71 >gi|114769364|ref|ZP_01446990.1| Putative uvrD/DNA Helicase II [alpha proteobacterium HTCC2255] gi|114550281|gb|EAU53162.1| Putative uvrD/DNA Helicase II [alpha proteobacterium HTCC2255] Length = 800 Score = 37.7 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ L+ N A P+ +L +T T AA EM RV Sbjct: 53 AGAGTGKTKALTTRIVHLMNMNQAWPNEILAVTFTNKAAREMKSRV 98 >gi|329116495|ref|ZP_08245212.1| ATP-dependent DNA helicase PcrA [Streptococcus parauberis NCFD 2020] gi|326906900|gb|EGE53814.1| ATP-dependent DNA helicase PcrA [Streptococcus parauberis NCFD 2020] Length = 764 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R L + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMRDRALALNPA 78 >gi|237748331|ref|ZP_04578811.1| exodeoxyribonuclease V [Oxalobacter formigenes OXCC13] gi|229379693|gb|EEO29784.1| exodeoxyribonuclease V [Oxalobacter formigenes OXCC13] Length = 1246 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 12/145 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV-------LEIIT 87 + A+AG+GKT + LRLLL +L +T T+AA AE+ R+ L + Sbjct: 20 IEASAGTGKTWNIGGLYLRLLLEKQLEVKQILVVTFTRAATAELRDRIRGRIAKALSYLN 79 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 L+D+ E+ Q + N +R L E+ + TIH+FC+ + Sbjct: 80 GVDDLADDTFLLELLGRQLETGNTHAELTSR--LQLAFESFDQAAIFTIHSFCQRALATT 137 Query: 148 PLEANITSHFAIADEEQSKKLIEEA 172 A + F + E ++++ EA Sbjct: 138 AFSAGVA--FTVRTETVDEEMVLEA 160 >gi|194333976|ref|YP_002015836.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271] gi|194311794|gb|ACF46189.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271] Length = 1064 Score = 37.7 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 31/139 (22%) Query: 35 WVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 ++SA AGSGKT L + +LL A P +L T T AA E+ RV ++ H Sbjct: 8 FISAGAGSGKTTRLTSILYEKLLSGEARPDAILATTFTTKAAGELKDRVRAMLL--HHKR 65 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 D++ +A I E+ ++ T+++ C ++++F E + Sbjct: 66 DDLAAA------------------------IAES----RIGTVNSVCGGLLKRFSFELGL 97 Query: 154 TSHFAIADEEQSKKLIEEA 172 T I DE+ + I A Sbjct: 98 TVDQRILDEKAALVQISRA 116 >gi|330718929|ref|ZP_08313529.1| ATP-dependent DNA helicase PcrA [Leuconostoc fallax KCTC 3537] Length = 745 Score = 37.7 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ N P +L +T T AA EM R+ ++ Sbjct: 27 IMAGAGSGKTRVLTHRIAHLIEDLNIFPWRILAITFTNKAAKEMKERIARLV 78 >gi|325959374|ref|YP_004290840.1| UvrD/REP helicase [Methanobacterium sp. AL-21] gi|325330806|gb|ADZ09868.1| UvrD/REP helicase [Methanobacterium sp. AL-21] Length = 933 Score = 37.7 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 41/130 (31%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH-LS 93 + A G+GKT +LV+RV L+ PS +L +T T AA E+ R+ SH + Sbjct: 28 IVAGPGAGKTRVLVERVAYLVKKKKVDPSNILVITFTVKAAEELKARL-------SHCVG 80 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 EI+S +I+ TIH+FC I++ + + Sbjct: 81 QEIVSMQIS--------------------------------TIHSFCHEILRDYSDYHEL 108 Query: 154 TSHFAIADEE 163 + F + D E Sbjct: 109 GATFDVLDSE 118 >gi|317181161|dbj|BAJ58947.1| DNA helicase II [Helicobacter pylori F32] Length = 681 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78 +++++ AS + A AGSGKT L R+ L+ A PS L LT T A+ EM Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEM 71 Query: 79 SHRVLEII 86 R L+++ Sbjct: 72 QERALKLL 79 >gi|210135645|ref|YP_002302084.1| DNA helicase II [Helicobacter pylori P12] gi|210133613|gb|ACJ08604.1| DNA helicase II [Helicobacter pylori P12] Length = 681 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSH 80 ++++ AS + A AGSGKT L R+ L+ A PS L LT T A+ EM Sbjct: 14 AQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEMQE 73 Query: 81 RVLEIIT 87 R L+++ Sbjct: 74 RALKLLN 80 >gi|167845096|ref|ZP_02470604.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei B7210] Length = 652 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P + + R L + + TIHAFC+ Sbjct: 87 TGDDGGDPFIARLFETTLAPERGLDPQTA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|167836128|ref|ZP_02463011.1| exodeoxyribonuclease V, beta subunit [Burkholderia thailandensis MSMB43] Length = 529 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P + + R L + + TIHAFC+ Sbjct: 87 TGNDGGDPFVARLFETTLAPERGLDPETA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|187479679|ref|YP_787704.1| ATP-dependent DNA helicase [Bordetella avium 197N] gi|115424266|emb|CAJ50819.1| ATP-dependent DNA helicase [Bordetella avium 197N] Length = 684 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 38/137 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ LL + ++ LT T AA EM+ RV ++ Sbjct: 28 VLAGAGSGKTRVITQKIAYLLRECGYMGRNVVALTFTNKAAREMTERVKPLV-------- 79 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 D A+ GL + T HA ++++ + A + Sbjct: 80 ------------------DRKLAK-----------GLTISTFHALGVRLLREEAVHAGLK 110 Query: 155 SHFAIADEEQSKKLIEE 171 F+I D + + +I++ Sbjct: 111 PQFSILDADDAMAIIQD 127 >gi|254496066|ref|ZP_05108967.1| ATP-dependent DNA helicase Rep [Legionella drancourtii LLAP12] gi|254354708|gb|EET13342.1| ATP-dependent DNA helicase Rep [Legionella drancourtii LLAP12] Length = 686 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLC-LTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++ Q++ L+ + ++ +C +T T AA EM RV ++ A Sbjct: 38 VLAGAGSGKTRVITQKIGYLINTCGYAASSVCAVTFTNKAANEMRARVAAVLPA 91 >gi|225377484|ref|ZP_03754705.1| hypothetical protein ROSEINA2194_03132 [Roseburia inulinivorans DSM 16841] gi|225210676|gb|EEG93030.1| hypothetical protein ROSEINA2194_03132 [Roseburia inulinivorans DSM 16841] Length = 734 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV 82 D + + V+AN GSGKT +L+ +V+ L P ++ LT T AA E+ R+ Sbjct: 20 DESSACLVNANVGSGKTTVLITKVMYLHYEKQIPYEQMVVLTFTNKAADEIKERL 74 >gi|217033890|ref|ZP_03439314.1| hypothetical protein HP9810_870g22 [Helicobacter pylori 98-10] gi|216943653|gb|EEC23098.1| hypothetical protein HP9810_870g22 [Helicobacter pylori 98-10] Length = 681 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78 +++++ AS + A AGSGKT L R+ L+ A PS L LT T A+ EM Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEM 71 Query: 79 SHRVLEII 86 R L+++ Sbjct: 72 QERALKLL 79 >gi|53805125|ref|YP_113202.1| exodeoxyribonuclease V subunit beta [Methylococcus capsulatus str. Bath] gi|53758886|gb|AAU93177.1| exodeoxyribonuclease V, beta subunit [Methylococcus capsulatus str. Bath] Length = 1200 Score = 37.7 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 14/144 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHL- 92 + A+AG+GKT + LRLLL +L +T T AA AE+ R+ I+ +L Sbjct: 20 IEASAGTGKTWNICGLYLRLLLEQEREVQNILVVTFTNAATAELRERIRSRIVETLVYLR 79 Query: 93 -----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 +D ++ + ++G D + R L L + TIH FC+ + Sbjct: 80 GGGGAADPFVTGLVAALEG----GFDRALLRQRLERALLAFDEAAIFTIHGFCQRALAGT 135 Query: 148 PLEANITSHFAIADEEQSKKLIEE 171 P A + FA+ + L +E Sbjct: 136 PFAAGLP--FALELVQDDAMLAQE 157 >gi|256852263|ref|ZP_05557649.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 27-2-CHN] gi|260661705|ref|ZP_05862616.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 115-3-CHN] gi|282934843|ref|ZP_06340076.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1] gi|297205570|ref|ZP_06922966.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii JV-V16] gi|256615309|gb|EEU20500.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 27-2-CHN] gi|260547452|gb|EEX23431.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 115-3-CHN] gi|281301074|gb|EFA93385.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1] gi|297150148|gb|EFH30445.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii JV-V16] Length = 754 Score = 37.7 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 43/142 (30%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L +R+ L+ P +L +T T AA EM RV +++ Sbjct: 27 VVAGAGSGKTSVLTRRIAYLVEEKGVAPWNILAITFTNKAATEMKERVQKLL-------- 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV--QTIHAFCEAIMQQFPLEAN 152 P G V T HA C I+++ + Sbjct: 79 --------------------------------GPAGQDVWMSTFHALCVRILRRDADKIG 106 Query: 153 ITSHFAIADEEQSKKLIEEAKK 174 + +F+IAD + LI+ +K Sbjct: 107 YSRNFSIADSSEQVTLIKHIEK 128 >gi|167918353|ref|ZP_02505444.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei BCC215] Length = 667 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P + + R L + + TIHAFC+ Sbjct: 87 TGDDGGDPFIARLFETTLAPERGLDPQTA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|164687737|ref|ZP_02211765.1| hypothetical protein CLOBAR_01379 [Clostridium bartlettii DSM 16795] gi|164603511|gb|EDQ96976.1| hypothetical protein CLOBAR_01379 [Clostridium bartlettii DSM 16795] Length = 746 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 9/89 (10%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70 ETI++++ + E + ++ + A AGSGKT +L R+ L+ +L +T Sbjct: 4 ETIEMLNPAQREAVEQTEG--PILILAGAGSGKTRVLTTRIGYLMKEKKVKAENILAITF 61 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSA 99 T AA EM RV E L+DE SA Sbjct: 62 TNKAANEMRERVDET------LNDEDTSA 84 >gi|71065902|ref|YP_264629.1| rep helicase, single-stranded DNA-dependent ATPase protein [Psychrobacter arcticus 273-4] gi|71038887|gb|AAZ19195.1| probable rep helicase, single-stranded DNA-dependent ATPase protein [Psychrobacter arcticus 273-4] Length = 154 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 4/80 (5%) Query: 22 SEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 + QLLA+ V A AGSGKT L R L+ P +L LT T+ AA E+ Sbjct: 67 ANQLLAATTIEGKVLVIAGAGSGKTKTLTYRTSYLIENGVSPKEILLLTFTRKAANEIKS 126 Query: 81 R---VLEIITAWSHLSDEIL 97 R +L I +++ DE L Sbjct: 127 RAKKLLASIPSFTQRLDEDL 146 >gi|317010148|gb|ADU80728.1| DNA helicase II (uvrD) [Helicobacter pylori India7] Length = 682 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSH 80 ++++ AS + A AGSGKT L R+ L+ A PS L LT T A+ EM Sbjct: 15 AQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEMQE 74 Query: 81 RVLEII 86 R L+++ Sbjct: 75 RALKLL 80 >gi|256821245|ref|YP_003145208.1| ATP-dependent DNA helicase Rep [Kangiella koreensis DSM 16069] gi|256794784|gb|ACV25440.1| ATP-dependent DNA helicase Rep [Kangiella koreensis DSM 16069] Length = 674 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 40/156 (25%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAA 75 +++ + E LLA+ V A AGSGKT ++ ++++ L+ P+ ++ +T T AA Sbjct: 6 LNEKQREALLATQG--PILVLAGAGSGKTSVITRKMVYLIKEKDIPARNIVAVTFTNKAA 63 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV +K+ G K + GL V T Sbjct: 64 REMKQRV-------------------SKLAGAKATQ------------------GLTVST 86 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 H F +++ + + S+F I D++ S LI++ Sbjct: 87 FHNFGLNFIRREYKKLRMKSNFTIFDDQDSLALIKD 122 >gi|99034367|ref|ZP_01314391.1| hypothetical protein Wendoof_01000810 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 149 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 D +S EQ A ++ R + A AG+GKT + R+ ++ +A+ +L +T T Sbjct: 3 DYLSLLNPEQQSAVTNIDRPVLILAGAGTGKTRTITSRIAHIIRNGHAYSDEILAVTFTN 62 Query: 73 AAAAEMSHRVLEI 85 AA EM RVLE+ Sbjct: 63 KAANEMVSRVLEL 75 >gi|15675225|ref|NP_269399.1| DNA helicase II [Streptococcus pyogenes M1 GAS] gi|21910437|ref|NP_664705.1| DNA helicase II [Streptococcus pyogenes MGAS315] gi|28896013|ref|NP_802363.1| DNA helicase II [Streptococcus pyogenes SSI-1] gi|71910790|ref|YP_282340.1| DNA helicase II [Streptococcus pyogenes MGAS5005] gi|94988710|ref|YP_596811.1| DNA helicase II [Streptococcus pyogenes MGAS9429] gi|94992533|ref|YP_600632.1| DNA helicase II [Streptococcus pyogenes MGAS2096] gi|13622394|gb|AAK34120.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes M1 GAS] gi|21904635|gb|AAM79508.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes MGAS315] gi|28811263|dbj|BAC64196.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes SSI-1] gi|71853572|gb|AAZ51595.1| DNA helicase II [Streptococcus pyogenes MGAS5005] gi|94542218|gb|ABF32267.1| DNA helicase II [Streptococcus pyogenes MGAS9429] gi|94546041|gb|ABF36088.1| DNA helicase II [Streptococcus pyogenes MGAS2096] Length = 772 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R L + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALALNPA 78 >gi|317013248|gb|ADU83856.1| DNA helicase II (uvrD) [Helicobacter pylori Lithuania75] Length = 682 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSH 80 ++++ AS + A AGSGKT L R+ L+ A PS L LT T A+ EM Sbjct: 15 AQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEMQE 74 Query: 81 RVLEII 86 R L+++ Sbjct: 75 RALKLL 80 >gi|307638133|gb|ADN80583.1| ATP-dependent DNA helicase [Helicobacter pylori 908] gi|325996733|gb|ADZ52138.1| ATP-dependent DNA helicase /epsilon proteobacterial type 2 [Helicobacter pylori 2018] gi|325998327|gb|ADZ50535.1| putative ATP-dependent DNA helicase [Helicobacter pylori 2017] Length = 681 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSH 80 ++++ AS + A AGSGKT L R+ L+ A PS L LT T A+ EM Sbjct: 14 AQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEMQE 73 Query: 81 RVLEIIT 87 R L+++ Sbjct: 74 RALKLLN 80 >gi|167902086|ref|ZP_02489291.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei NCTC 13177] Length = 661 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P + + R L + + TIHAFC+ Sbjct: 87 TGDDGGDPFIARLFETTLAPERGLDPQTA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|167562258|ref|ZP_02355174.1| exodeoxyribonuclease V, beta subunit [Burkholderia oklahomensis EO147] Length = 537 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + ++ +G P + + R L + + TIHAFC+ Sbjct: 87 TGDDGNDPFVARLFETTLSPERGIDPETA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|50914312|ref|YP_060284.1| DNA helicase II [Streptococcus pyogenes MGAS10394] gi|94990600|ref|YP_598700.1| DNA helicase II [Streptococcus pyogenes MGAS10270] gi|50903386|gb|AAT87101.1| DNA helicase II [Streptococcus pyogenes MGAS10394] gi|94544108|gb|ABF34156.1| DNA helicase II [Streptococcus pyogenes MGAS10270] Length = 772 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R L + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALALNPA 78 >gi|126660529|ref|ZP_01731635.1| ABC1-like protein [Cyanothece sp. CCY0110] gi|126618172|gb|EAZ88935.1| ABC1-like protein [Cyanothece sp. CCY0110] Length = 572 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 8/130 (6%) Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL---LITILETPGGLKVQTIHAFCEA 142 + WS+ SD +L+ E IQG K +D +A L I + GL+ H F A Sbjct: 246 VIYWSYSSDRVLTLEW--IQGYKLTDTDKIRAAGLDPYAIVKIGVTSGLRQLLEHGFFHA 303 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE---LKKAFYEILEIS 199 L A + A D +L EE K++ +S++ NE+ L + F ++ ++ Sbjct: 304 DPHPGNLFATLDGRMAFIDFGMMDQLEEETKETIASSVVQLINEDYNALARDFVQLGFLT 363 Query: 200 NDEDIETLIS 209 D DI +I Sbjct: 364 PDTDIRPIIP 373 >gi|251771257|gb|EES51838.1| UvrD/REP helicase [Leptospirillum ferrodiazotrophum] Length = 647 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 26/53 (49%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 P A V A AGSGKT +L R LL +L LT TK A+ M R+ Sbjct: 20 PDGPALVLAGAGSGKTRVLTYRAAHLLSRGVPAPRILLLTFTKKASRVMQERL 72 >gi|209559530|ref|YP_002286002.1| Putative ATP-dependent DNA helicase [Streptococcus pyogenes NZ131] gi|209540731|gb|ACI61307.1| Putative ATP-dependent DNA helicase [Streptococcus pyogenes NZ131] Length = 772 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R L + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALALNPA 78 >gi|187735472|ref|YP_001877584.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835] gi|187425524|gb|ACD04803.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835] Length = 668 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 28/49 (57%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AG+GKT + R+ ++ P ++L +T T AA EM RV +++ Sbjct: 29 AGAGTGKTRTVTCRIAHMVDRGISPKSILAVTFTNKAALEMRERVGQMV 77 >gi|121607593|ref|YP_995400.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2] gi|121552233|gb|ABM56382.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2] Length = 697 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 27/51 (52%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ ++ ++ P + +T T AAAEM R +I Sbjct: 22 VLAGAGSGKTRVITHKIAHMIERGLEPGRIAAITFTNKAAAEMRERARGLI 72 >gi|326383314|ref|ZP_08205002.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395] gi|326198064|gb|EGD55250.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395] Length = 679 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Query: 9 EH-SETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65 EH + + + S EQL A P V A AG+GKT + +R+ L+ +P + Sbjct: 5 EHQAREVGVTSGLDPEQLEAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVDSGQVNPEQV 64 Query: 66 LCLTHTKAAAAEMSHRV 82 L +T T AAAEM R+ Sbjct: 65 LAVTFTARAAAEMRERL 81 >gi|269302528|gb|ACZ32628.1| exodeoxyribonuclease V, beta subunit [Chlamydophila pneumoniae LPCoLN] Length = 1050 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 2/115 (1%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 ++ A+AG+GKT + Q VLR L+ + H L +T T A+ E+ R+ + + Sbjct: 18 FLEASAGTGKTFTIEQIVLRALIEGSLTHVEHALAITFTNASTNELKVRIKDNLAQTLRE 77 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 +L+++ + ++ + + L T + + TIH FC +++Q+ Sbjct: 78 LKAVLNSQPASLPTYLDINCNVKQIYMQVRNALATLDQMSLFTIHGFCNFVLEQY 132 >gi|167815128|ref|ZP_02446808.1| putative exodeoxyribonuclease V beta chain [Burkholderia pseudomallei 91] Length = 626 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P + + R L + + TIHAFC+ Sbjct: 87 TGDDGGDPFIARLFETTLAPERGLDPQTA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|78049804|ref|YP_365979.1| DNA-dependent helicase II [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926001|ref|ZP_08187367.1| ATP-dependent DNA helicase UvrD [Xanthomonas perforans 91-118] gi|78038234|emb|CAJ25979.1| DNA helicase II [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543597|gb|EGD15014.1| ATP-dependent DNA helicase UvrD [Xanthomonas perforans 91-118] Length = 723 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHR 81 S P V A AGSGKT +L+ R+ L P+ + +T T AA EM HR Sbjct: 14 SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFTNKAAGEMRHR 68 >gi|308062742|gb|ADO04630.1| DNA helicase II [Helicobacter pylori Cuz20] Length = 681 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78 +++++ AS + A AGSGKT L R+ L+ A PS L LT T A+ EM Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEM 71 Query: 79 SHRVLEII 86 R L+++ Sbjct: 72 QERALKLL 79 >gi|325673659|ref|ZP_08153350.1| exodeoxyribonuclease V beta subunit [Rhodococcus equi ATCC 33707] gi|325555680|gb|EGD25351.1| exodeoxyribonuclease V beta subunit [Rhodococcus equi ATCC 33707] Length = 1106 Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 67/154 (43%), Gaps = 14/154 (9%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVL 83 L A P + + A+AG+GKT+ +V R + S LL +T ++AA E+ R Sbjct: 14 LFAPLPQGTTVLEASAGTGKTYAIVGLAARFVAEEGIDLSQLLLVTFSRAATKELRERTR 73 Query: 84 EIITAWSHLSDEILSAEITK----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 E + + + +A ++K + +++++ R L+ L + T H+F Sbjct: 74 ERFASAAAGLADPAAARVSKDPLVAHLADTDDAEIARRRRRLMQALSDFDAGTIVTTHSF 133 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 C+ ++ + D + L+EEA+ Sbjct: 134 CQRMLDGLGIA---------GDRDPDAVLVEEAE 158 >gi|259416911|ref|ZP_05740831.1| DNA helicase II [Silicibacter sp. TrichCH4B] gi|259348350|gb|EEW60127.1| DNA helicase II [Silicibacter sp. TrichCH4B] Length = 811 Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ LL N A + +L +T T AA EM RV Sbjct: 50 AGAGTGKTKALTTRIVHLLTTNRARTNEILAVTFTNKAAREMKERV 95 >gi|188528249|ref|YP_001910936.1| DNA helicase II [Helicobacter pylori Shi470] gi|188144489|gb|ACD48906.1| DNA helicase II [Helicobacter pylori Shi470] Length = 681 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78 +++++ AS + A AGSGKT L R+ L+ A PS L LT T A+ EM Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEM 71 Query: 79 SHRVLEII 86 R L+++ Sbjct: 72 QERALKLL 79 >gi|239917997|ref|YP_002957555.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665] gi|281415827|ref|ZP_06247569.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665] gi|239839204|gb|ACS31001.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665] Length = 1176 Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 3/65 (4%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77 T+ + + + P V A AGSGKT + RV+ L+AN P +L +T T+ AA E Sbjct: 37 TEEQAEVVTAPLTPRLVLAGAGSGKTATMADRVV-WLVANGLVRPDEVLGVTFTRKAAGE 95 Query: 78 MSHRV 82 ++ R+ Sbjct: 96 LAERI 100 >gi|49188460|gb|AAT57902.1| 1-aminocyclopropane-1-carboxylate synthase [Saccharum officinarum] Length = 242 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 48/208 (23%), Positives = 90/208 (43%), Gaps = 35/208 (16%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHI---LVQRVLRLLLANAHP 62 E+ + DL+ E L P + W A AGSG + RV +LL N P Sbjct: 2 GLAENQVSFDLL-----EGYLRDHPEAADWGGA-AGSGVASFRDNALMRVRAVLLTN--P 53 Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWS-HL-SDEILS------------AEITKIQGKK 108 S L T ++ + VL+ + + HL SDEI S AE+ + + ++ Sbjct: 54 SNPLGTTVKRSVLED----VLDFVVRHNIHLISDEIYSGSVFAAPDLVSVAELVESRARR 109 Query: 109 PNKSDMSKARHLLITILETPG--GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSK 166 + S +++ H++ ++ + PG G +V ++++ +A++ A S F + + K Sbjct: 110 GDDSGVAERVHIVYSLSKDPGLPGFRVGVVYSYNDAVVTT----ARRMSSFTLVSSQTQK 165 Query: 167 KLIEEAKKSTLASIMLDNNEELKKAFYE 194 L+ + A + N E +A ++ Sbjct: 166 TLVAMLSDADFADAYIRTNRERLRARHD 193 >gi|73666864|ref|YP_302880.1| ATP-dependent DNA helicase Rep [Ehrlichia canis str. Jake] gi|72394005|gb|AAZ68282.1| ATP-dependent DNA helicase, Rep family [Ehrlichia canis str. Jake] Length = 639 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 A AG+GKT + R+ ++ N A P+ +L +T T AA EM R+ E+ A++ Sbjct: 27 AGAGTGKTRTVTSRIAYIINNNFALPNQILAVTFTNKAANEMLARINEMTPAYN 80 >gi|329938004|ref|ZP_08287486.1| putative DNA helicase [Streptomyces griseoaurantiacus M045] gi|329302961|gb|EGG46850.1| putative DNA helicase [Streptomyces griseoaurantiacus M045] Length = 631 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 7/53 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP------STLLCLTHTKAAAAEMSHRV 82 V+A AG+GKTH LV+R L L + P + +L LT ++AAA E+ R+ Sbjct: 29 VTAGAGAGKTHTLVRR-LDALCGHEDPEEALDAADILVLTFSRAAARELRERI 80 >gi|315638948|ref|ZP_07894119.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Campylobacter upsaliensis JV21] gi|315480977|gb|EFU71610.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Campylobacter upsaliensis JV21] Length = 675 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S+ EQL A+ + A+AG+GKT +V R+ LL P ++ LT T A+ Sbjct: 3 LSKLNEEQLKAAKANFGHNLIIASAGTGKTSTIVARIAFLLQQGISPERIMLLTFTNKAS 62 Query: 76 AEMSHRV 82 EM R+ Sbjct: 63 KEMIARL 69 >gi|307721687|ref|YP_003892827.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294] gi|306979780|gb|ADN09815.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294] Length = 682 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +V R+ L+ P S L LT T AA EM R L +I Sbjct: 27 AGAGSGKTTTIVSRLAYLIEGVGIPASNTLTLTFTNKAAKEMKERSLSMI 76 >gi|291460344|ref|ZP_06599734.1| exonuclease RexA [Oribacterium sp. oral taxon 078 str. F0262] gi|291417099|gb|EFE90818.1| exonuclease RexA [Oribacterium sp. oral taxon 078 str. F0262] Length = 433 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 21/110 (19%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A G GKT +L +R+L + A S+ L L T+ A E ++ + HL E Sbjct: 28 AGPGIGKTTLLSRRILSQIKAGEKLSSFLLLAFTREAVREFRRKIRK------HLYRE-- 79 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 + G+ + + K+R L I ++QTI++FC +++ + Sbjct: 80 ------LNGESRGNALLQKSRQKLSEI-------RIQTIYSFCRWVLETY 116 >gi|269101917|ref|ZP_06154614.1| exodeoxyribonuclease V beta chain [Photobacterium damselae subsp. damselae CIP 102761] gi|268161815|gb|EEZ40311.1| exodeoxyribonuclease V beta chain [Photobacterium damselae subsp. damselae CIP 102761] Length = 1221 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 26/147 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-------HPST---LLCLTHTKAAAAEMSHRVL-- 83 + A+AG+GKT + LRLLL + +P T +L +T T+AA AE+ R+ Sbjct: 28 IEASAGTGKTFTIASLYLRLLLGHGDEQSRFPYPLTVDQILVVTFTEAATAELRDRIRRR 87 Query: 84 ----EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 I A + SD +++ + I K + + +A + + TIH F Sbjct: 88 IHDARIAFARGNSSDPVIAPLLEDIADHKAAAATLLQAERQMDEA-------AIYTIHGF 140 Query: 140 CEAIMQQFPLEAN--ITSHFAIADEEQ 164 C+ ++ Q E+ T+ F + +E Q Sbjct: 141 CQRMLTQNAFESGSLFTNEF-VTEESQ 166 >gi|254779988|ref|YP_003058095.1| DNA helicase II (UvrD) [Helicobacter pylori B38] gi|254001901|emb|CAX30154.1| DNA helicase II (UvrD) [Helicobacter pylori B38] Length = 681 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSH 80 ++++ AS + A AGSGKT L R+ L+ A PS L LT T A+ EM Sbjct: 14 AQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEMQE 73 Query: 81 RVLEII 86 R L+++ Sbjct: 74 RALKLL 79 >gi|163839985|ref|YP_001624390.1| superfamily I DNA/RNA helicase [Renibacterium salmoninarum ATCC 33209] gi|162953461|gb|ABY22976.1| superfamily I DNA and RNA helicase [Renibacterium salmoninarum ATCC 33209] Length = 714 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%) Query: 23 EQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSH 80 EQLL A+ + V A AG+GKT + R+ +L ++ P LL +T T AAAEM Sbjct: 16 EQLLVATTLSGPVCVLAGAGTGKTRAITHRIAYGVLGGSYNPQRLLAVTFTARAAAEMRT 75 Query: 81 RVLEI 85 R+ ++ Sbjct: 76 RLRDL 80 >gi|289666094|ref|ZP_06487675.1| DNA-dependent helicase II [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 723 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHR 81 S P V A AGSGKT +L+ R+ L P+ + +T T AA EM HR Sbjct: 14 SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFTNKAAGEMRHR 68 >gi|110679728|ref|YP_682735.1| helicase IV [Roseobacter denitrificans OCh 114] gi|109455844|gb|ABG32049.1| helicase IV [Roseobacter denitrificans OCh 114] Length = 916 Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 26/199 (13%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PS 63 + + E +T++ + T ++L + V A AGSGKT ++ + L+ A P Sbjct: 132 DRWTEFLDTVESMPLTPEQRLSVVVDEDATLVLAGAGSGKTSVITAKAAYLVKAGIRSPE 191 Query: 64 TLLCLTHTKAAAAEMSHRV-----LEIITAWSH-LSDEILSAEITKIQGKKP-------- 109 LL L + AA EMS R+ + I H L+ EI I ++G+KP Sbjct: 192 ELLLLAFARDAATEMSERIEARCGVPIAARTFHALAYEI----IGDVEGEKPALAPTATD 247 Query: 110 NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 +K+ +S R +L I+ + +T+ + FP + S E +S+ L Sbjct: 248 DKAFLSLIRDILRYIVSRVSDV-AETVIGWFAGFFDDFPSPWDFKSAHEWYSEVESRNL- 305 Query: 170 EEAKKSTLASIMLDNNEEL 188 TL +++ EEL Sbjct: 306 -----RTLQGETVNSFEEL 319 >gi|328947216|ref|YP_004364553.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489] gi|328447540|gb|AEB13256.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489] Length = 736 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85 A AGSGKT ++ ++ ++ +P+++L +T TK AA EM R + + Sbjct: 29 AGAGSGKTRVITTKIAYMISELGINPASILAVTFTKKAAEEMKERAINL 77 >gi|222153135|ref|YP_002562312.1| ATP-dependent DNA helicase [Streptococcus uberis 0140J] gi|222113948|emb|CAR42197.1| putative ATP-dependent DNA helicase [Streptococcus uberis 0140J] Length = 755 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVL 83 + A AGSGKT +L R+ L+ +P +L +T T AA EM R L Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKCVNPWNILAITFTNKAAREMRERAL 73 >gi|50365383|ref|YP_053808.1| repair endonuclease ATP-dependent DNA helicase [Mesoplasma florum L1] gi|50363939|gb|AAT75924.1| repair endonuclease ATP-dependent DNA helicase [Mesoplasma florum L1] Length = 723 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT ++ ++ L+ P +L +T T AA EM RV +II Sbjct: 25 IVAGAGSGKTKVITTKIAYLIEELKMAPYKILAVTFTNKAAREMRDRVTKII 76 >gi|19746195|ref|NP_607331.1| DNA helicase II [Streptococcus pyogenes MGAS8232] gi|19748377|gb|AAL97830.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes MGAS8232] Length = 772 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R L + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMKERALALNPA 78 >gi|326383310|ref|ZP_08204998.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395] gi|326198060|gb|EGD55246.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395] Length = 1117 Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 17 ISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKA 73 + Q EQ+ + P V A AG+GKT + RV+ L+AN P +L LT T+ Sbjct: 18 LPQPTPEQIEVIEAPMEPMLVVAGAGAGKTETMASRVV-WLVANRLVGPEEILGLTFTRK 76 Query: 74 AAAEMSHRV 82 AA+E++ R+ Sbjct: 77 AASELAARI 85 >gi|325916758|ref|ZP_08179012.1| ATP-dependent DNA helicase UvrD [Xanthomonas vesicatoria ATCC 35937] gi|325537012|gb|EGD08754.1| ATP-dependent DNA helicase UvrD [Xanthomonas vesicatoria ATCC 35937] Length = 723 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHR 81 S P V A AGSGKT +L+ R+ L P+ + +T T AA EM HR Sbjct: 14 SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFTNKAAGEMRHR 68 >gi|59711189|ref|YP_203965.1| exonuclease V (RecBCD complex), beta subunit [Vibrio fischeri ES114] gi|59479290|gb|AAW85077.1| exonuclease V (RecBCD complex), beta subunit [Vibrio fischeri ES114] Length = 1208 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 27/138 (19%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT + LRLLL + T +L +T T+AA AE+ R+ Sbjct: 23 IEASAGTGKTFTIASLYLRLLLGHGDEGTRHQEELTVDRILVVTFTEAATAELRERIR-- 80 Query: 86 ITAWSHLSDEILS-AEITKIQGKKPNK----------SDMSKARHLLITILETPGGLKVQ 134 + + D L+ A G K D A +L+ + + Sbjct: 81 ----AKIHDARLAFARAVHNNGYKSGDPVIDPLLASIGDHKSAAQILLNAERSMDEASIF 136 Query: 135 TIHAFCEAIMQQFPLEAN 152 TIH FC+ ++ Q E+ Sbjct: 137 TIHGFCQRMLTQNAFESG 154 >gi|325923795|ref|ZP_08185410.1| ATP-dependent DNA helicase UvrD [Xanthomonas gardneri ATCC 19865] gi|325545728|gb|EGD16967.1| ATP-dependent DNA helicase UvrD [Xanthomonas gardneri ATCC 19865] Length = 723 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHR 81 S P V A AGSGKT +L+ R+ L P+ + +T T AA EM HR Sbjct: 14 SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFTNKAAGEMRHR 68 >gi|329939647|ref|ZP_08288948.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045] gi|329301217|gb|EGG45112.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045] Length = 1244 Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 35/154 (22%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + A AGSGKT ++ RV+ L+ P +L LT T AA E++ RV + Sbjct: 30 PPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAAGELAERVRK---- 85 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 ++ A +T P+ PG + T HAF ++ Sbjct: 86 ------ALVRAGVTDPDAIDPDNP---------------PGEPLISTYHAFAGRLLTDHG 124 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 L + E + +L+ +A + LA+ +L Sbjct: 125 LRIGL---------EPTSRLLADATRYQLAARVL 149 >gi|295697356|ref|YP_003590594.1| ATP-dependent DNA helicase PcrA [Bacillus tusciae DSM 2912] gi|295412958|gb|ADG07450.1| ATP-dependent DNA helicase PcrA [Bacillus tusciae DSM 2912] Length = 755 Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 11/77 (14%) Query: 21 KSEQLLA--SDPTRSA--------WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 ++E LLA +D R A + A AGSGKT +L RV L+ A P +L +T Sbjct: 10 RAEALLAGLNDAQREAVRQTEGPLLILAGAGSGKTRVLTHRVAYLVATRKAPPWGILAIT 69 Query: 70 HTKAAAAEMSHRVLEII 86 T AA EM R+ ++ Sbjct: 70 FTNKAAREMRERIGRLV 86 >gi|238754346|ref|ZP_04615702.1| Helicase IV (75 kDa helicase) [Yersinia ruckeri ATCC 29473] gi|238707379|gb|EEP99740.1| Helicase IV (75 kDa helicase) [Yersinia ruckeri ATCC 29473] Length = 686 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +LV R LL A P +L L + AA EM+ R+ Sbjct: 216 VLAGAGSGKTSVLVARAGWLLRRQEAQPDQILLLAFGRQAADEMNARI 263 >gi|172040184|ref|YP_001799898.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum DSM 7109] gi|171851488|emb|CAQ04464.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum DSM 7109] Length = 1219 Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 3/64 (4%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEM 78 + ++++ P S V A AG+GKT + RV+ L+AN + P +L LT T+ AA E+ Sbjct: 56 QQSAVISAPPQGSYIVVAGAGAGKTETMAARVV-WLVANGYVLPEHVLGLTFTRKAANEL 114 Query: 79 SHRV 82 R+ Sbjct: 115 GQRI 118 >gi|167569499|ref|ZP_02362373.1| exodeoxyribonuclease V, beta subunit [Burkholderia oklahomensis C6786] Length = 554 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRGRLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + ++ +G P + + R L + + TIHAFC+ Sbjct: 87 TGGDGNDPFVARLFETTLSPERGIDPETA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|188993614|ref|YP_001905624.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris str. B100] gi|167735374|emb|CAP53588.1| DNA helicase II [Xanthomonas campestris pv. campestris] Length = 723 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHR 81 S P V A AGSGKT +L+ R+ L P+ + +T T AA EM HR Sbjct: 14 SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFTNKAAGEMRHR 68 >gi|291277042|ref|YP_003516814.1| putative ATP-dependent DNA helicase [Helicobacter mustelae 12198] gi|290964236|emb|CBG40085.1| putative ATP-dependent DNA helicase [Helicobacter mustelae 12198] Length = 674 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S EQ LA+ + A+AG+GKT +V R+ L P ++L LT T AA Sbjct: 3 LSNLNDEQRLAATAKMGHNLIIASAGTGKTSTIVGRIAHLFDNQILPESILLLTFTNKAA 62 Query: 76 AEMSHRV 82 EM RV Sbjct: 63 EEMIARV 69 >gi|254672842|emb|CBA07038.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis alpha275] Length = 1204 Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 26/159 (16%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L + +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130 + + L D+ LS I + +K D ++R LI L+ G Sbjct: 81 SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKESRTRLIVRLKAAIGQFDN 139 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + LI Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178 >gi|19552002|ref|NP_600004.1| putative helicase [Corynebacterium glutamicum ATCC 13032] gi|62389665|ref|YP_225067.1| DNA helicase II protein [Corynebacterium glutamicum ATCC 13032] gi|41325000|emb|CAF19481.1| PROBABLE DNA HELICASE II PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 1070 Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 14/111 (12%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTL 65 QEH+ T + ++ S+P V A AG+GKT + RV+ L+AN P + Sbjct: 15 QEHAPT------DQQSAIIGSEPG-PLLVVAGAGAGKTETMAARVV-WLVANGFVAPDQV 66 Query: 66 LCLTHTKAAAAEMSHRV---LEIITAWSHLSDEILSAEITK-IQGKKPNKS 112 L LT T+ AA ++S R+ LE + L D + ++ K +Q P S Sbjct: 67 LGLTFTRKAAQQLSQRIRKRLETLAGVPRLKDIDPTGQLEKNLQAITPTVS 117 >gi|322807582|emb|CBZ05157.1| ATP-dependent DNA helicase UvrD/PcrA [Clostridium botulinum H04402 065] Length = 738 Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ ++ + +PS +L +T T AA EM R+ ++ Sbjct: 24 ILAGAGSGKTRVLTYRIAHMIENLDIYPSKILAITFTNKAAGEMKERIKALV 75 >gi|318042807|ref|ZP_07974763.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CB0101] Length = 802 Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 20/145 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+ + P+ LL +T T AA EM R LE+ Sbjct: 26 VVAGAGSGKTRALTHRIAHLIGQHGVDPAELLAVTFTNKAAREMKER-LEL--------- 75 Query: 95 EILSAEITKIQGKKP-NKSDMSKARHLLITIL-ETPGGLKVQTIHAFCEAIMQ------Q 146 +L+ ++ + Q +P + + R L I + L + T HA +++ + Sbjct: 76 -LLAQKLAQSQFGQPWSTLPAVEQRQLRSRIYRDVIKDLWIGTFHALFARLLRFDIDKFR 134 Query: 147 FPLEANITSHFAIADEEQSKKLIEE 171 P T F+I DE ++ L++E Sbjct: 135 DPEGLTWTRQFSIYDEGDTQSLVKE 159 >gi|302339977|ref|YP_003805183.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293] gi|301637162|gb|ADK82589.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293] Length = 1082 Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 34/143 (23%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A G+GKT L+++V RL+ PS+++ +T AA E ++D Sbjct: 509 IIAGPGTGKTRTLIEKVTRLIHGGVVPSSIVAVTFANKAAGE--------------VADR 554 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + SA IT S +S+A G++V T H+ AI++ Sbjct: 555 LRSAGITV-------NSSLSEA-----------DGVRVFTFHSLGLAIVKPHLALLEREG 596 Query: 156 HFAIADEEQSKKLIEEAKKSTLA 178 F I D+E+ L++ KS L+ Sbjct: 597 DFLIIDDEEKMALLKS--KSDLS 617 >gi|255020927|ref|ZP_05292983.1| ATP-dependent DNA helicase Rep [Acidithiobacillus caldus ATCC 51756] gi|254969718|gb|EET27224.1| ATP-dependent DNA helicase Rep [Acidithiobacillus caldus ATCC 51756] Length = 663 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 12/88 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLE---------- 84 V A AGSGKT ++ ++++ L+ + P + +T T AA EM RV + Sbjct: 25 VLAGAGSGKTRVITRKIVHLIQDHGVEPRHIAAVTFTNKAAREMKGRVQQSLEGRSARGL 84 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKS 112 I+ + L EIL +IT++ G + N S Sbjct: 85 TISTFHRLGLEILRQDITQL-GYRENFS 111 >gi|317014893|gb|ADU82329.1| putative ATP-dependent DNA helicase [Helicobacter pylori Gambia94/24] Length = 681 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIIT 87 A AGSGKT L R+ L+ A PS L LT T A+ EM R L+++ Sbjct: 30 AGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEMQERALKLLN 80 >gi|45657496|ref|YP_001582.1| ATP-dependent DNA helicase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600735|gb|AAS70219.1| ATP-dependent DNA helicase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 732 Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 DL + K L + P + A AGSGKT ++ R+ LL+ N + +T T A Sbjct: 8 DLNEEQKKAVLQVNGPV---LILAGAGSGKTRVITHRIANLLI-NHGIDRICAVTFTNKA 63 Query: 75 AAEMSHRVLEII 86 AAEM RV +I+ Sbjct: 64 AAEMVERVKKIV 75 >gi|330431882|gb|AEC16941.1| ATP-dependent DNA helicase Rep [Gallibacterium anatis UMN179] Length = 670 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +++ ++ L+ N P+ + +T T AA EM RV Sbjct: 20 VLAGAGSGKTRVIINKIAYLIEHCNYSPNKIAAVTFTNKAAREMKERV 67 >gi|241767147|ref|ZP_04764910.1| UvrD/REP helicase [Acidovorax delafieldii 2AN] gi|241362257|gb|EER58285.1| UvrD/REP helicase [Acidovorax delafieldii 2AN] Length = 778 Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 24 QLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 QL A T+ A V A AGSGKT ++ ++ ++ P + +T T AAAEM R Sbjct: 96 QLQAVHYTQGACLVLAGAGSGKTRVITHKIAHMIEQGLEPRRIAAITFTNKAAAEMRERA 155 Query: 83 LEII 86 +I Sbjct: 156 KGLI 159 >gi|225574543|ref|ZP_03783153.1| hypothetical protein RUMHYD_02620 [Blautia hydrogenotrophica DSM 10507] gi|225038230|gb|EEG48476.1| hypothetical protein RUMHYD_02620 [Blautia hydrogenotrophica DSM 10507] Length = 737 Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ +P ++ +T T AA EM RV +I+ Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTNKAAQEMKERVDQIV 75 >gi|182419338|ref|ZP_02950590.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum 5521] gi|182376669|gb|EDT74241.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum 5521] Length = 757 Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 52/141 (36%), Gaps = 39/141 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ ++ N P +L +T T AA EM RV +I Sbjct: 25 ILAGAGSGKTRVLTHRIAHMVEDLNIAPYNILAITFTNKAAKEMKDRVRALIG------- 77 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E + + T H+ C I+++ + Sbjct: 78 -------------------------------ECAENMWISTFHSTCVKILRREIDKIGYK 106 Query: 155 SHFAIADEEQSKKLIEEAKKS 175 S F I D K L++E K+ Sbjct: 107 SSFTIYDSSDQKTLVKECMKT 127 >gi|145294939|ref|YP_001137760.1| hypothetical protein cgR_0885 [Corynebacterium glutamicum R] gi|140844859|dbj|BAF53858.1| hypothetical protein [Corynebacterium glutamicum R] Length = 1070 Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 14/111 (12%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTL 65 QEH+ T + ++ S+P V A AG+GKT + RV+ L+AN P + Sbjct: 15 QEHAPT------DQQSAIIGSEPG-PLLVVAGAGAGKTETMAARVV-WLVANGFVAPDQV 66 Query: 66 LCLTHTKAAAAEMSHRV---LEIITAWSHLSDEILSAEITK-IQGKKPNKS 112 L LT T+ AA ++S R+ LE + L D + ++ K +Q P S Sbjct: 67 LGLTFTRKAAQQLSQRIRKRLETLAGVPRLKDIDPTGQLEKNLQAITPTVS 117 >gi|126725750|ref|ZP_01741592.1| helicase IV [Rhodobacterales bacterium HTCC2150] gi|126704954|gb|EBA04045.1| helicase IV [Rhodobacterales bacterium HTCC2150] Length = 984 Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 7 FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTL 65 F++ +TI+ T ++L + V A AGSGKT ++V + L+ + P + Sbjct: 194 FKDFFDTIESNPLTPEQRLAVIADEDATIVLAGAGSGKTSVIVAKAAYLIKSGIRQPDKI 253 Query: 66 LCLTHTKAAAAEMSHRVLE 84 L + K AAAEM+ R+ E Sbjct: 254 LLMAFGKDAAAEMATRIEE 272 >gi|126726603|ref|ZP_01742443.1| DNA helicase II, putative [Rhodobacterales bacterium HTCC2150] gi|126703932|gb|EBA03025.1| DNA helicase II, putative [Rhodobacterales bacterium HTCC2150] Length = 797 Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R+ LL A P+ +L +T T AA EM RV Sbjct: 61 AGAGTGKTKALTTRIAHLLATGAARPNEILAVTFTNKAAREMKDRV 106 >gi|145225238|ref|YP_001135916.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK] gi|145217724|gb|ABP47128.1| ATP-dependent DNA helicase, Rep family [Mycobacterium gilvum PYR-GCK] Length = 707 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79 + E +LA P V A AG+GKT + +R+ L+ A P +L +T T+ AA EM Sbjct: 22 QREAVLA--PRGPVCVLAGAGTGKTRTITRRIAHLVTAGHVAPGQVLAVTFTQRAAGEMR 79 Query: 80 HRV 82 R+ Sbjct: 80 GRL 82 >gi|315445535|ref|YP_004078414.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1] gi|315263838|gb|ADU00580.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1] Length = 707 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79 + E +LA P V A AG+GKT + +R+ L+ A P +L +T T+ AA EM Sbjct: 22 QREAVLA--PRGPVCVLAGAGTGKTRTITRRIAHLVTAGHVAPGQVLAVTFTQRAAGEMR 79 Query: 80 HRV 82 R+ Sbjct: 80 GRL 82 >gi|313667279|ref|YP_004049680.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977] gi|313153910|gb|ADR37760.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977] Length = 889 Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 19/139 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AG+GKT L QR L L + P + +T T AAAE+ R+ E + S Sbjct: 4 IVASAGTGKTTRLTQRYLEHLEQHP-PQRVAAVTFTNKAAAELRERIFEALGRGSFYD-- 60 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 P+ + + + +LE P G TIH+F +++ + Sbjct: 61 -----------FTPSPALAERLADYQVRVLEAPIG----TIHSFFGYLLRLTAPMLGLDP 105 Query: 156 HFAIADEEQSKK-LIEEAK 173 HF + D ++ +EE + Sbjct: 106 HFEVIDPATARAWFLEEVR 124 >gi|21323542|dbj|BAB98169.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum ATCC 13032] Length = 1073 Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 14/111 (12%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTL 65 QEH+ T + ++ S+P V A AG+GKT + RV+ L+AN P + Sbjct: 18 QEHAPT------DQQSAIIGSEPG-PLLVVAGAGAGKTETMAARVV-WLVANGFVAPDQV 69 Query: 66 LCLTHTKAAAAEMSHRV---LEIITAWSHLSDEILSAEITK-IQGKKPNKS 112 L LT T+ AA ++S R+ LE + L D + ++ K +Q P S Sbjct: 70 LGLTFTRKAAQQLSQRIRKRLETLAGVPRLKDIDPTGQLEKNLQAITPTVS 120 >gi|52425154|ref|YP_088291.1| RecB protein [Mannheimia succiniciproducens MBEL55E] gi|52307206|gb|AAU37706.1| RecB protein [Mannheimia succiniciproducens MBEL55E] Length = 1205 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 26/149 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS--------TLLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT + LRLLL +L +T T+AA E+ R+ I Sbjct: 7 IEASAGTGKTFTMASLYLRLLLQAGENCFFKPLEVEQILVVTFTEAATQELRERIRHRI- 65 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK-------------VQ 134 HL+ + L+ + + + K+ ++ L+ LE P ++ + Sbjct: 66 ---HLAKKQLT-QYAENKNKQVFYGTENEILADLVDSLELPVAIQRLKIAEQNMDLAAIY 121 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEE 163 TIH FC ++ Q+ + I + + +E Sbjct: 122 TIHGFCRRMLVQYAFNSGIHFNLQLVKDE 150 >gi|24215017|ref|NP_712498.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601] gi|24196064|gb|AAN49516.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601] Length = 732 Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 DL + K L + P + A AGSGKT ++ R+ LL+ N + +T T A Sbjct: 8 DLNEEQKKAVLQVNGPV---LILAGAGSGKTRVITHRIANLLI-NHGIDRICAVTFTNKA 63 Query: 75 AAEMSHRVLEII 86 AAEM RV +I+ Sbjct: 64 AAEMVERVKKIV 75 >gi|323157143|gb|EFZ43266.1| helicase IV domain protein [Escherichia coli EPECa14] Length = 291 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRE 263 >gi|311029838|ref|ZP_07707928.1| ATP-dependent DNA helicase [Bacillus sp. m3-13] Length = 628 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L+ RV ++ P +++ +T T AA EM R+ Sbjct: 27 VLAGAGSGKTRVLITRVAYMVQEEKIDPKSIMLITFTAKAANEMKERL 74 >gi|167760475|ref|ZP_02432602.1| hypothetical protein CLOSCI_02849 [Clostridium scindens ATCC 35704] gi|167661841|gb|EDS05971.1| hypothetical protein CLOSCI_02849 [Clostridium scindens ATCC 35704] Length = 743 Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 D +++ + E +L ++ + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 5 DTLNEQQKEAVLHTEG--PLLILAGAGSGKTRVLTHRIAYLIEEQGVNPWNILAITFTNK 62 Query: 74 AAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 63 AAGEMRERVDKLV 75 >gi|87120740|ref|ZP_01076633.1| ATP-dependent DNA helicase Rep [Marinomonas sp. MED121] gi|86163968|gb|EAQ65240.1| ATP-dependent DNA helicase Rep [Marinomonas sp. MED121] Length = 682 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 49/168 (29%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ ++ L+ + +T ++ +T T AA EM RV+ +++ Sbjct: 32 VLAGAGSGKTSVITTKIAYLIQECGYKATNIVAVTFTNKAAREMKERVVSMLS------- 84 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 D S+ GLK+ T H I+++ +A + Sbjct: 85 -----------------KDESR-------------GLKISTFHNLGLTILRKEYAKAGLK 114 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDN--NEELKKAFYEILEISN 200 F + D + S LI+E +LD NE+ +A + + ISN Sbjct: 115 QGFTLFDSQDSLTLIKE---------ILDKEFNEQTDEANFCQMTISN 153 >gi|25027347|ref|NP_737401.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens YS-314] gi|23492628|dbj|BAC17601.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens YS-314] Length = 1175 Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 14/111 (12%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTL 65 QEH+ T + ++ ++P V A AG+GKT + RV+ L+AN A P + Sbjct: 112 QEHAPT------AQQAAIIGAEPG-PLLVVAGAGAGKTETMAARVV-WLVANGFAAPDQV 163 Query: 66 LCLTHTKAAAAEMSHRV---LEIITAWSHLSDEILSAEITK-IQGKKPNKS 112 L LT T+ AA ++S R+ LE + L D S I + +Q P S Sbjct: 164 LGLTFTRKAAQQLSQRIRQRLETLAGIPTLRDLDPSGGIARSLQAITPTVS 214 >gi|289751888|ref|ZP_06511266.1| superfamily protein I DNA and RNA helicase [Mycobacterium tuberculosis T92] gi|289692475|gb|EFD59904.1| superfamily protein I DNA and RNA helicase [Mycobacterium tuberculosis T92] Length = 349 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PS 63 S E + + L T + + + P V A AG+GKT + RV+ L+AN + P Sbjct: 11 SPAELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPG 69 Query: 64 TLLCLTHTKAAAAEMSHRV 82 +L LT T+ AA ++ RV Sbjct: 70 QVLGLTFTRKAAGQLLRRV 88 >gi|238899306|ref|YP_002924989.1| Rep helicase, a single-stranded DNA-dependent ATPase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229467067|gb|ACQ68841.1| Rep helicase, a single-stranded DNA-dependent ATPase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 676 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 11/85 (12%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLE----- 84 T V A AGSGKT +++ ++ L+ + S + +T T AA EM RV + Sbjct: 18 TGPCLVLAGAGSGKTRVIIHKIAHLIRRCGYLSRQIAAVTFTNKAAREMKERVADILGRK 77 Query: 85 -----IITAWSHLSDEILSAEITKI 104 II+ + L EI+ AEI ++ Sbjct: 78 ETFGLIISTFHALGLEIIRAEIAQL 102 >gi|254520983|ref|ZP_05133038.1| exodeoxyribonuclease V, beta subunit [Stenotrophomonas sp. SKA14] gi|219718574|gb|EED37099.1| exodeoxyribonuclease V, beta subunit [Stenotrophomonas sp. SKA14] Length = 1226 Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 18/151 (11%) Query: 21 KSEQLLASDPTRS------AWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 + Q +A DP + + A+AG+GKT L RL++ +L +T T A Sbjct: 8 EESQRMAGDPYLTLPLQGIRLIEASAGTGKTFTLATLFTRLVVEQGLRIGQILAVTFTDA 67 Query: 74 AAAEMSHRVLEIITAWSHL----------SDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 A E+ R+ E + + L D L+ E+ + + +S + R L + Sbjct: 68 ATQELRKRIRERLALAARLVDLEPAEGEAPDVRLTREVLQRHLQGGTESAATLKRRLQVA 127 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E + TIH FC ++++ LE+ T Sbjct: 128 ADEIDLA-SIFTIHGFCTRVLREHALESGHT 157 >gi|197301471|ref|ZP_03166550.1| hypothetical protein RUMLAC_00202 [Ruminococcus lactaris ATCC 29176] gi|197299431|gb|EDY33952.1| hypothetical protein RUMLAC_00202 [Ruminococcus lactaris ATCC 29176] Length = 758 Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVL 83 D + + V+AN GSGKT +L+ ++L L + P ++ LT T AA E+ R++ Sbjct: 23 DESPACVVNANVGSGKTTVLIAKILYLYQVKQIQPEEMIVLTFTNKAADEIKERLI 78 >gi|317011613|gb|ADU85360.1| DNA helicase II [Helicobacter pylori SouthAfrica7] Length = 681 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIIT 87 A AGSGKT L R+ L+ A PS L LT T A+ EM R L+++ Sbjct: 30 AGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEMQERALKLLN 80 >gi|317507957|ref|ZP_07965651.1| UvrD/REP helicase [Segniliparus rugosus ATCC BAA-974] gi|316253745|gb|EFV13121.1| UvrD/REP helicase [Segniliparus rugosus ATCC BAA-974] Length = 1070 Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77 ++ ++ + P S+ V A AGSGKT + RV+ L+AN P +L LT T++AA Sbjct: 17 SEEQERVIGAPLASSVVLAGAGSGKTETIAARVV-WLIANGLVEPEQVLGLTFTRSAARG 75 Query: 78 MSHRV 82 M R+ Sbjct: 76 MLSRI 80 >gi|308177921|ref|YP_003917327.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis Re117] gi|307745384|emb|CBT76356.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis Re117] Length = 1105 Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 6/99 (6%) Query: 8 QEHSETI-DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPST 64 QE SE + + T + + + P V A AGSGKT + +V+ L+AN P Sbjct: 9 QELSEALGEQFPPTAQQAEIVAAPLEPMLVIAGAGSGKTKTMADKVV-WLVANQLVRPEE 67 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITK 103 +L +T T+ AA E+S R+ I ++ +LSAE T+ Sbjct: 68 ILGVTFTRKAAGELSIRIRAKIAQL--VATGLLSAEETR 104 >gi|262375711|ref|ZP_06068943.1| ATP-dependent DNA helicase Rep [Acinetobacter lwoffii SH145] gi|262309314|gb|EEY90445.1| ATP-dependent DNA helicase Rep [Acinetobacter lwoffii SH145] Length = 679 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 39/156 (25%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKA 73 L SQ +QL A T+ V A AGSGKT ++ +++ L+ P+ + +T T Sbjct: 3 LASQLNDKQLEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLVKHCGIPAHRITAMTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++T E G+ V Sbjct: 63 AAREMKERVSKLLTR-------------------------------------EESKGVSV 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T H F +++Q + ++F+I D + K+++ Sbjct: 86 STFHTFGLNMLRQELKHTPLKNNFSILDADDCKRIL 121 >gi|254521548|ref|ZP_05133603.1| DNA helicase II [Stenotrophomonas sp. SKA14] gi|219719139|gb|EED37664.1| DNA helicase II [Stenotrophomonas sp. SKA14] Length = 730 Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69 S +D ++ + E + S P V A AGSGKT +L R+ L + P+ + +T Sbjct: 4 SHLLDGLNPAQREAV--SAPPGHHLVLAGAGSGKTRVLTHRIAWLHEVDGVPTHGIFAVT 61 Query: 70 HTKAAAAEMSHRV 82 T AA EM HR+ Sbjct: 62 FTNKAAGEMRHRI 74 >gi|109948205|ref|YP_665433.1| ATP-dependent DNA helicase [Helicobacter acinonychis str. Sheeba] gi|109715426|emb|CAK00434.1| ATP-dependent DNA helicase [Helicobacter acinonychis str. Sheeba] Length = 681 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT L R+ L+ A PS L LT T A+ EM R L+++ Sbjct: 30 AGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEMQERALKLL 79 >gi|67639455|ref|ZP_00438310.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei GB8 horse 4] gi|238520001|gb|EEP83465.1| exodeoxyribonuclease V, beta subunit [Burkholderia mallei GB8 horse 4] Length = 389 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P + + R L + + TIHAFC+ Sbjct: 87 TGDDGGDPFIARLFETTLAPERGLDPQTA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|302390294|ref|YP_003826115.1| ATP-dependent DNA helicase PcrA [Thermosediminibacter oceani DSM 16646] gi|302200922|gb|ADL08492.1| ATP-dependent DNA helicase PcrA [Thermosediminibacter oceani DSM 16646] Length = 731 Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 ++ +S EQ A + P + A AGSGKT +L R+ L+ P +++ +T T Sbjct: 1 MNYLSDLNEEQRKAVTHPGGPLLILAGAGSGKTRVLTYRIAYLIEKMGVDPGSIMAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWS 90 AA EM R+ E + W+ Sbjct: 61 NKAAQEMKERI-EKLLPWA 78 >gi|149279369|ref|ZP_01885500.1| ATP-dependent DNA helicase II [Pedobacter sp. BAL39] gi|149229895|gb|EDM35283.1| ATP-dependent DNA helicase II [Pedobacter sp. BAL39] Length = 747 Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT ++ RV L+ +L LT T A+ +M R++ +I Sbjct: 2 IVAGAGSGKTRVITYRVAHLIEKGVDAFNILVLTFTNKASKDMRERIMNVI 52 >gi|149198486|ref|ZP_01875531.1| exodeoxyribonuclease V, 135 kDa subunit [Lentisphaera araneosa HTCC2155] gi|149138492|gb|EDM26900.1| exodeoxyribonuclease V, 135 kDa subunit [Lentisphaera araneosa HTCC2155] Length = 1198 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 26/148 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AG+GKT+ + L +L S +L +T T+ A E+ RV + Sbjct: 19 IEASAGTGKTYSIANIFLHFILKGRDVSEILVVTFTEDATKELRDRVR-----------K 67 Query: 96 ILSAEITKIQGKKPNKSDMSKA------------RHLLITILETPGGLKVQTIHAFCEAI 143 LS + +I+G + KA R L + ++ + + TIH FC+ + Sbjct: 68 NLSKALLQIRGDVTEEDPTLKAIIEIYPHQDENRRRLELALVNFDQAV-ISTIHGFCQRM 126 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEE 171 +++ E++ T + ++ KLI+E Sbjct: 127 LKENAFESHSTFDMELVTDD--SKLIDE 152 >gi|194367719|ref|YP_002030329.1| DNA-dependent helicase II [Stenotrophomonas maltophilia R551-3] gi|194350523|gb|ACF53646.1| DNA helicase II [Stenotrophomonas maltophilia R551-3] Length = 730 Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69 S +D ++ + E + S P V A AGSGKT +L R+ L + P+ + +T Sbjct: 4 SHLLDGLNPAQREAV--SAPPGHHLVLAGAGSGKTRVLTHRIAWLHEVDGVPTHGIFAVT 61 Query: 70 HTKAAAAEMSHRV 82 T AA EM HR+ Sbjct: 62 FTNKAAGEMRHRI 74 >gi|225023801|ref|ZP_03712993.1| hypothetical protein EIKCOROL_00666 [Eikenella corrodens ATCC 23834] gi|224943456|gb|EEG24665.1| hypothetical protein EIKCOROL_00666 [Eikenella corrodens ATCC 23834] Length = 720 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 2/63 (3%) Query: 22 SEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMS 79 +EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T AA EM Sbjct: 3 NEQLSAVTWPAQSALVLAGAGSGKTKVLTTRIAWLLHSGQASLHSVMAVTFTNKAAKEMR 62 Query: 80 HRV 82 R+ Sbjct: 63 ARL 65 >gi|254412445|ref|ZP_05026219.1| UvrD/REP helicase subfamily [Microcoleus chthonoplastes PCC 7420] gi|196180755|gb|EDX75745.1| UvrD/REP helicase subfamily [Microcoleus chthonoplastes PCC 7420] Length = 1139 Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT L R+ L+L + P +L +T T AA EM R+ Sbjct: 33 VVAGAGSGKTRALTYRIANLILTHKVAPENILAVTFTNKAAREMKSRI 80 >gi|149204193|ref|ZP_01881161.1| UvrD/REP helicase [Roseovarius sp. TM1035] gi|149142635|gb|EDM30680.1| UvrD/REP helicase [Roseovarius sp. TM1035] Length = 779 Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ L+ A P +L +T T AA EM RV Sbjct: 50 AGAGTGKTKALTTRIVHLMNTGRAGPGDILAVTFTNKAAREMKERV 95 >gi|15612436|ref|NP_224089.1| putative ATP-dependent DNA helicase [Helicobacter pylori J99] gi|4155998|gb|AAD06960.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99] Length = 681 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT L R+ L+ A PS L LT T A+ EM R L+++ Sbjct: 30 AGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEMQERALKLL 79 >gi|268680252|ref|YP_003304683.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946] gi|268618283|gb|ACZ12648.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946] Length = 681 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 A AGSGKT + R+ LL + L LT T AA+EM R + +I + ++ Sbjct: 26 AGAGSGKTKTITSRLSYLLSLGIPSANTLTLTFTNKAASEMRERAMAMIGSHTY 79 >gi|237730918|ref|ZP_04561399.1| DNA helicase IV [Citrobacter sp. 30_2] gi|226906457|gb|EEH92375.1| DNA helicase IV [Citrobacter sp. 30_2] Length = 691 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 A AGSGKT +LV R LL A P +L L + AA EM R+ E Sbjct: 223 AGAGSGKTSVLVARAGWLLARGEAAPEQILLLAFGRKAAQEMDDRIRE 270 >gi|251799681|ref|YP_003014412.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. JDR-2] gi|247547307|gb|ACT04326.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. JDR-2] Length = 785 Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ P ++L +T T AA EM RV +I Sbjct: 31 IMAGAGSGKTRVLTHRIAYLIEKKRVAPWSILAITFTNKAAREMQARVAALI 82 >gi|86749146|ref|YP_485642.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2] gi|86572174|gb|ABD06731.1| ATP-dependent DNA helicase, Rep family [Rhodopseudomonas palustris HaA2] Length = 845 Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A P+ +L +T T AA EM R+ +++ Sbjct: 55 VLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNKAAREMKLRLGQML 106 >gi|91977833|ref|YP_570492.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5] gi|91684289|gb|ABE40591.1| ATP-dependent DNA helicase, Rep family [Rhodopseudomonas palustris BisB5] Length = 847 Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A P+ +L +T T AA EM R+ +++ Sbjct: 55 VLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNKAAREMKLRLGQML 106 >gi|117926757|ref|YP_867374.1| ATP-dependent DNA helicase Rep [Magnetococcus sp. MC-1] gi|117610513|gb|ABK45968.1| ATP-dependent DNA helicase, Rep family [Magnetococcus sp. MC-1] Length = 673 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L +R+ ++ A P +L +T T AA EM +RV Sbjct: 26 VLAGAGSGKTRVLTRRLAWIIQQQQASPEEVLAVTFTNKAAKEMRNRV 73 >gi|283795947|ref|ZP_06345100.1| UvrD/REP helicase [Clostridium sp. M62/1] gi|291076588|gb|EFE13952.1| UvrD/REP helicase [Clostridium sp. M62/1] Length = 1133 Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A+ P RS V A G+GKT L R+ LL + PS + +T TK AA E+ R+ Sbjct: 521 AAVPARSMAVIAGPGTGKTGTLTARIRCLLEVRRVRPSEITAVTFTKRAAEELRERL 577 >gi|222152848|ref|YP_002562025.1| ATP-dependent exonuclease subunit A [Streptococcus uberis 0140J] gi|251764571|sp|B9DRV0|ADDA_STRU0 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|222113661|emb|CAR41583.1| putative ATP-dependent exonuclease subunit A [Streptococcus uberis 0140J] Length = 1220 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 VSA+AGSGKT ++V+R++ +L + T T AA E+ R+ Sbjct: 45 VSASAGSGKTFVMVERIIDKVLRGISIENMFISTFTVKAANELKERL 91 >gi|218885868|ref|YP_002435189.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756822|gb|ACL07721.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1161 Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 23/138 (16%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS----------------TLLCLTHTKAAAAEMS 79 + A+AGSGKT+ L +R L LLA A +L +T T AA+EM Sbjct: 9 IKASAGSGKTYTLTRRFLS-LLAGARDEDGRACSLAVEGGHCWPDILAVTFTNKAASEMK 67 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV+ ++ H + A G P ++A + IL G L ++TI + Sbjct: 68 ERVIRLLK--EHALADPAQARKDGGDGAWPP----ARAARWVDIILRRYGALNIRTIDSL 121 Query: 140 CEAIMQQFPLEANITSHF 157 +++ LE ++ F Sbjct: 122 LTMLVRLAALELSLPPDF 139 >gi|284992622|ref|YP_003411176.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160] gi|284065867|gb|ADB76805.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160] Length = 1120 Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 3/61 (4%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHR 81 +++++ R V A AGSGKT + RV L+AN P +L LT T+ AA+E++ R Sbjct: 53 RVVSAPADRPLVVVAGAGSGKTETMAARVC-WLVANELVAPDAVLGLTFTRKAASELNER 111 Query: 82 V 82 + Sbjct: 112 I 112 >gi|87122397|ref|ZP_01078278.1| related to ATP-dependent DNA helicase II (Rep) [Marinomonas sp. MED121] gi|86162372|gb|EAQ63656.1| related to ATP-dependent DNA helicase II (Rep) [Marinomonas sp. MED121] Length = 766 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%) Query: 17 ISQTKSEQL--LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 ++Q EQL + ++ +A + A AG+GKT L+ R+ L+ P + K+A Sbjct: 1 MTQYTQEQLAVIQANTNINAKIIAVAGAGKTTTLIARINHLIEQGVQPDRIAVFMFNKSA 60 Query: 75 AAEMSHRVLEIITAWS 90 E S R+L+ +T S Sbjct: 61 QEEFSQRLLQAMTHQS 76 >gi|329119934|ref|ZP_08248608.1| exodeoxyribonuclease V beta subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327464090|gb|EGF10401.1| exodeoxyribonuclease V beta subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 1265 Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 14/125 (11%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII----- 86 +A + A+AG+GKT+ + RL+L P +L +T TKAA AE+ R+ + Sbjct: 92 TALIEASAGTGKTYGIAALFTRLILLEKLPVDKVLVVTFTKAATAELKTRLRARLDEALR 151 Query: 87 ----TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 A +D + + + ++P + + L L + TIH FC+ Sbjct: 152 RIRGDATESPADPFMQKLLAQAAAQEPRE----RLEMRLKAALSQFDNAAIYTIHGFCQR 207 Query: 143 IMQQF 147 I+ + Sbjct: 208 ILGDY 212 >gi|256847800|ref|ZP_05553245.1| ATP-dependent DNA helicase PcrA [Lactobacillus coleohominis 101-4-CHN] gi|256715489|gb|EEU30465.1| ATP-dependent DNA helicase PcrA [Lactobacillus coleohominis 101-4-CHN] Length = 759 Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 61/155 (39%), Gaps = 41/155 (26%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 ++ + E +LA++ V A AGSGKT +L RV L+ N P +L +T T AA Sbjct: 8 MNDKQQEAVLATEG--PVLVMAGAGSGKTRVLTHRVAYLIEEKNVLPWHILAITFTNKAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R I K+ G N + V T Sbjct: 66 REMKER-------------------IGKLLGDSAND-------------------IWVST 87 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 HA C I+++ + + F IAD + + L++ Sbjct: 88 FHALCVRILRRDIDKLGFNTAFTIADPGEQRTLMK 122 >gi|219559253|ref|ZP_03538329.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T17] Length = 356 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PS 63 S E + + L T + + + P V A AG+GKT + RV+ L+AN + P Sbjct: 30 SPAELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPG 88 Query: 64 TLLCLTHTKAAAAEMSHRV 82 +L LT T+ AA ++ RV Sbjct: 89 QVLGLTFTRKAAGQLLRRV 107 >gi|254448414|ref|ZP_05061875.1| ATP-dependent DNA helicase rep [gamma proteobacterium HTCC5015] gi|198262027|gb|EDY86311.1| ATP-dependent DNA helicase rep [gamma proteobacterium HTCC5015] Length = 671 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++ +++ RL+ + P + +T T AA EM R+ Sbjct: 20 VLAGAGSGKTRVITEKIARLIGREGYEPQQIFAVTFTNKAAREMLERI 67 >gi|53802296|ref|YP_113003.1| ATP-dependent DNA helicase UvrD [Methylococcus capsulatus str. Bath] gi|53756057|gb|AAU90348.1| ATP-dependent DNA helicase, UvrD/REP family [Methylococcus capsulatus str. Bath] Length = 1469 Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Query: 19 QTKSEQLLASDPTR--SAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 Q ++Q + +D + V A GSGKT +LV R+ L+ + +P +L L + + AA Sbjct: 851 QNPAQQRIVADDREQTNVLVLAGPGSGKTRVLVHRIAYLIRVRRENPRGILALAYNRHAA 910 Query: 76 AEMSHRVLEII 86 AE+ R+ +I Sbjct: 911 AEIRKRLAGLI 921 >gi|85703443|ref|ZP_01034547.1| DNA helicase II, putative [Roseovarius sp. 217] gi|85672371|gb|EAQ27228.1| DNA helicase II, putative [Roseovarius sp. 217] Length = 779 Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ L+ A P +L +T T AA EM RV Sbjct: 50 AGAGTGKTKALTTRIVHLMNTGRAGPGDILAVTFTNKAAREMKERV 95 >gi|57505386|ref|ZP_00371314.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Campylobacter upsaliensis RM3195] gi|57016211|gb|EAL52997.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Campylobacter upsaliensis RM3195] Length = 673 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 17 ISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S+ EQL A+ + A+AG+GKT +V R+ LL P ++ LT T A+ Sbjct: 3 LSKLNEEQLKAAKTNFGHNLIIASAGTGKTSTIVARIAFLLQQGISPERIMLLTFTNKAS 62 Query: 76 AEMSHRV 82 EM R+ Sbjct: 63 KEMITRL 69 >gi|269218749|ref|ZP_06162603.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 848 str. F0332] gi|269211860|gb|EEZ78200.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 848 str. F0332] Length = 1158 Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 V+A AGSGKT + R+ + A P +L LT T+ AA E+S RV Sbjct: 47 VTAGAGSGKTATMANRIAYHVAAGRVSPEEVLGLTFTRKAAGELSQRV 94 >gi|331091397|ref|ZP_08340236.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 2_1_46FAA] gi|330404261|gb|EGG83808.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 2_1_46FAA] Length = 741 Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ +P +L +T T AA EM RV +I+ Sbjct: 24 ILAGAGSGKTRVLTHRISYLIEEKGVNPWNILAITFTNKAAGEMRERVDKIV 75 >gi|317178183|dbj|BAJ55972.1| DNA helicase II [Helicobacter pylori F16] Length = 681 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT L R+ L+ A PS L LT T A+ EM R L+++ Sbjct: 30 AGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEMQERALKLL 79 >gi|310826557|ref|YP_003958914.1| hypothetical protein ELI_0943 [Eubacterium limosum KIST612] gi|308738291|gb|ADO35951.1| hypothetical protein ELI_0943 [Eubacterium limosum KIST612] Length = 734 Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT ++ R+ ++ + A PS +L +T T AA EM R+ Sbjct: 24 ILAGAGSGKTRTIIHRIAYIIESKKAWPSQILAITFTNKAAGEMRERI 71 >gi|149197452|ref|ZP_01874503.1| UvrD/REP helicase [Lentisphaera araneosa HTCC2155] gi|149139470|gb|EDM27872.1| UvrD/REP helicase [Lentisphaera araneosa HTCC2155] Length = 674 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 37/159 (23%), Positives = 62/159 (38%), Gaps = 39/159 (24%) Query: 16 LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L+ + EQ A T + + A AG+GKT ++ R+ ++ + A P +L +T T Sbjct: 4 LLDRLNDEQRQAVTTTEKPLLILAGAGTGKTMVVTSRIAFIVQSGRAEPGEILAVTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R +I G+K K L V Sbjct: 64 AANEMKERAGRLI-------------------GQKAVKD------------------LWV 86 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 T H+F I++++ +A F +A+ LI++ Sbjct: 87 STFHSFGMKILRKYAYQAGYAPDFTLAEYGDQVGLIKQG 125 >gi|146182736|ref|XP_001025134.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila] gi|146143751|gb|EAS04889.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila SB210] Length = 476 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 16/138 (11%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV--------L 83 + A AG+GKT + V VL L +A P + L L HT+ A ++ + Sbjct: 76 KDVLCQAKAGTGKTAVFVLSVLNQLPDDAKPFSCLVLCHTRELAFQIKNEFKRLGKFTNF 135 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF---- 139 ++ + + + S +I ++ KKP+ + R L + I P ++ Q I F Sbjct: 136 KVKAVYGGVEE---SVDIHTLKTKKPHILVATPGRCLSL-IKAKPSVIETQNIEYFIIDE 191 Query: 140 CEAIMQQFPLEANITSHF 157 C+ ++ + +++ + F Sbjct: 192 CDRVLSSNKMRSDVQNIF 209 >gi|152987976|ref|YP_001349289.1| putative helicase [Pseudomonas aeruginosa PA7] gi|150963134|gb|ABR85159.1| probable helicase [Pseudomonas aeruginosa PA7] Length = 649 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 6/85 (7%) Query: 14 IDLISQTKSEQ---LLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69 + ++S EQ +L P A + A AGSGK+ LV RV+ +L P L ++ Sbjct: 106 LGVVSPPSEEQWAMILCRQPL--ARIFAGAGSGKSTTLVLRVVFMLCHLGVEPQRLTVIS 163 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSD 94 T A+ A++ ++L ++ W + D Sbjct: 164 FTNASCAQLREQLLRVLAHWEYPFD 188 >gi|148259806|ref|YP_001233933.1| UvrD/REP helicase [Acidiphilium cryptum JF-5] gi|146401487|gb|ABQ30014.1| UvrD/REP helicase [Acidiphilium cryptum JF-5] Length = 639 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 45/181 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72 +D +S T+ + + D +A V A G GKT +L R+ R+L + A + +L LT T Sbjct: 9 LDRLSPTQRQAVDWED--GAALVLAGPGVGKTTVLTTRIARILDSTAGKNFRILALTFTT 66 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 A EM RV I+ AE T I Sbjct: 67 KAGDEMRERVEAIVPGL---------AERTVI---------------------------- 89 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSK-KLIEEA---KKSTLASIMLDNNEEL 188 T H+FC +++Q I F I D+++ + +L+++A S A++ D+ L Sbjct: 90 -GTFHSFCAQVLRQHGSHLAIKPDFGIYDQDEDRAELLKDALEQAASHGAAVTADDTRWL 148 Query: 189 K 189 + Sbjct: 149 R 149 >gi|195978018|ref|YP_002123262.1| ATP-dependent DNA helicase UvrD/PcrA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974723|gb|ACG62249.1| ATP-dependent DNA helicase UvrD/PcrA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 765 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R L + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERALALSPA 78 >gi|322389226|ref|ZP_08062787.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC 903] gi|321144131|gb|EFX39548.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC 903] Length = 767 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R ++ A Sbjct: 31 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKERAYQLNPA 84 >gi|260662791|ref|ZP_05863685.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum 28-3-CHN] gi|260552872|gb|EEX25871.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum 28-3-CHN] Length = 756 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ H P +L +T T AA EM RV +++ Sbjct: 27 VMAGAGSGKTRVLTHRIA-YLIEERHVLPWHILAITFTNKAAREMKERVAKLL 78 >gi|225868652|ref|YP_002744600.1| ATP-dependent DNA helicase [Streptococcus equi subsp. zooepidemicus] gi|225701928|emb|CAW99448.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. zooepidemicus] Length = 763 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R L + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMRERALALSPA 78 >gi|120402806|ref|YP_952635.1| UvrD/REP helicase [Mycobacterium vanbaalenii PYR-1] gi|119955624|gb|ABM12629.1| ATP-dependent DNA helicase, Rep family [Mycobacterium vanbaalenii PYR-1] Length = 710 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79 + E +LA P V A AG+GKT + +R+ L+ A P +L +T T+ AA EM Sbjct: 22 QREAVLA--PRGPVCVLAGAGTGKTRTITRRIAHLVTAGHVAPGQVLAVTFTQRAAGEMR 79 Query: 80 HRV 82 R+ Sbjct: 80 GRL 82 >gi|258514808|ref|YP_003191030.1| UvrD/REP helicase [Desulfotomaculum acetoxidans DSM 771] gi|257778513|gb|ACV62407.1| UvrD/REP helicase [Desulfotomaculum acetoxidans DSM 771] Length = 808 Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 63/142 (44%), Gaps = 30/142 (21%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEMSHRVLEIITAWSH 91 +SA AG+GKT +++ R+ L L + PS ++ +T T AA +M R+ E + + H Sbjct: 116 ISAGAGTGKTTVMINRL--LYLKHIDPSLSFAEIVMITFTNEAAVQMRQRLAEKLINYYH 173 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 ++ + + LE +++ T+HAF + ++ E Sbjct: 174 VT-----------------------GQRKYLEWLEDTQKMQISTVHAFAKYLLGTVGQEL 210 Query: 152 NITSHFAIADEE-QSKKLIEEA 172 + A+ Q +++IE+A Sbjct: 211 GFSPSVALRGYHFQKRRIIEKA 232 >gi|58584193|ref|YP_203209.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625962|ref|YP_453334.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58428787|gb|AAW77824.1| DNA helicase II [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369902|dbj|BAE71060.1| DNA helicase II [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 728 Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69 S +D ++ + E + S P V A AGSGKT +L+ R+ L P+ + +T Sbjct: 4 SHLLDHLNPAQREAV--SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVT 61 Query: 70 HTKAAAAEMSHR 81 T AA EM HR Sbjct: 62 FTNKAAGEMRHR 73 >gi|299140726|ref|ZP_07033864.1| ATP-dependent DNA helicase PcrA [Prevotella oris C735] gi|298577692|gb|EFI49560.1| ATP-dependent DNA helicase PcrA [Prevotella oris C735] Length = 761 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L ++ L+ P ++L LT T AA EM R+ +++ Sbjct: 22 VIAGAGSGKTRVLTYKIAYLIDEKQFEPWSILALTFTNKAANEMRSRIGKVV 73 >gi|225388641|ref|ZP_03758365.1| hypothetical protein CLOSTASPAR_02377 [Clostridium asparagiforme DSM 15981] gi|225045317|gb|EEG55563.1| hypothetical protein CLOSTASPAR_02377 [Clostridium asparagiforme DSM 15981] Length = 769 Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L RV L+ +P ++ +T T AA EM RV +++ Sbjct: 15 VLAGAGSGKTRVLTHRVAYLIEEKEVNPWNIMAITFTNKAAGEMRERVDKLV 66 >gi|299783521|gb|ADJ41519.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum CECT 5716] Length = 756 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ H P +L +T T AA EM RV +++ Sbjct: 27 VMAGAGSGKTRVLTHRIA-YLIEERHVLPWHILAITFTNKAAREMKERVAKLL 78 >gi|259506514|ref|ZP_05749416.1| probable dna helicase II protein [Corynebacterium efficiens YS-314] gi|259165934|gb|EEW50488.1| probable dna helicase II protein [Corynebacterium efficiens YS-314] Length = 1067 Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 14/111 (12%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTL 65 QEH+ T + ++ ++P V A AG+GKT + RV+ L+AN A P + Sbjct: 4 QEHAPT------AQQAAIIGAEPG-PLLVVAGAGAGKTETMAARVV-WLVANGFAAPDQV 55 Query: 66 LCLTHTKAAAAEMSHRV---LEIITAWSHLSDEILSAEITK-IQGKKPNKS 112 L LT T+ AA ++S R+ LE + L D S I + +Q P S Sbjct: 56 LGLTFTRKAAQQLSQRIRQRLETLAGIPTLRDLDPSGGIARSLQAITPTVS 106 >gi|227515526|ref|ZP_03945575.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum ATCC 14931] gi|227086139|gb|EEI21451.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum ATCC 14931] Length = 760 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ H P +L +T T AA EM RV +++ Sbjct: 31 VMAGAGSGKTRVLTHRIA-YLIEERHVLPWHILAITFTNKAAREMKERVAKLL 82 >gi|308071013|ref|YP_003872618.1| ATP-dependent DNA helicase pcrA [Paenibacillus polymyxa E681] gi|305860292|gb|ADM72080.1| ATP-dependent DNA helicase pcrA [Paenibacillus polymyxa E681] Length = 774 Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ P +L +T T AA EM RV ++I Sbjct: 30 IMAGAGSGKTRVLTHRIAYLIATRKTAPWGILAITFTNKAAREMQDRVSKLI 81 >gi|281425747|ref|ZP_06256660.1| ATP-dependent DNA helicase PcrA [Prevotella oris F0302] gi|281400155|gb|EFB30986.1| ATP-dependent DNA helicase PcrA [Prevotella oris F0302] Length = 761 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L ++ L+ P ++L LT T AA EM R+ +++ Sbjct: 22 VIAGAGSGKTRVLTYKIAYLIDEKQFEPWSILALTFTNKAANEMRSRIGKVV 73 >gi|225870395|ref|YP_002746342.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047] gi|225699799|emb|CAW93615.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047] Length = 763 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R L + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERALALSPA 78 >gi|83643631|ref|YP_432066.1| DNA-dependent helicase II [Hahella chejuensis KCTC 2396] gi|83631674|gb|ABC27641.1| Superfamily I DNA and RNA helicase [Hahella chejuensis KCTC 2396] Length = 721 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 7/73 (9%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLT 69 +D ++ + E + AS R+ V A AGSGKT +LV R+ L+ AH ++ +T Sbjct: 6 VLDPLNDAQREAVTAS--ARNLLVLAGAGSGKTRVLVHRMAWLIQVERIGAH--AIMAVT 61 Query: 70 HTKAAAAEMSHRV 82 T AA EM RV Sbjct: 62 FTNKAAREMRERV 74 >gi|319947280|ref|ZP_08021513.1| ATP-dependent DNA helicase PcrA [Streptococcus australis ATCC 700641] gi|319746522|gb|EFV98782.1| ATP-dependent DNA helicase PcrA [Streptococcus australis ATCC 700641] Length = 767 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R ++ A Sbjct: 31 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKERAYQLNPA 84 >gi|242310501|ref|ZP_04809656.1| ATP-dependent DNA helicase [Helicobacter pullorum MIT 98-5489] gi|239522899|gb|EEQ62765.1| ATP-dependent DNA helicase [Helicobacter pullorum MIT 98-5489] Length = 702 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT + R+ L+ PS L LT T AA EM R L +I Sbjct: 28 AGAGSGKTKTITTRLAYLIDEVGIPPSNTLTLTFTNKAAQEMQKRALNMI 77 >gi|21233448|ref|NP_639365.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770412|ref|YP_245174.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris str. 8004] gi|21115293|gb|AAM43247.1| DNA helicase II [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575744|gb|AAY51154.1| DNA helicase II [Xanthomonas campestris pv. campestris str. 8004] Length = 728 Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69 S +D ++ + E + S P V A AGSGKT +L+ R+ L P+ + +T Sbjct: 4 SHLLDHLNPAQREAV--SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVT 61 Query: 70 HTKAAAAEMSHR 81 T AA EM HR Sbjct: 62 FTNKAAGEMRHR 73 >gi|289670782|ref|ZP_06491857.1| DNA-dependent helicase II [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 728 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69 S +D ++ + E + S P V A AGSGKT +L+ R+ L P+ + +T Sbjct: 4 SHLLDHLNPAQREAV--SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVT 61 Query: 70 HTKAAAAEMSHR 81 T AA EM HR Sbjct: 62 FTNKAAGEMRHR 73 >gi|257064330|ref|YP_003144002.1| DNA/RNA helicase, superfamily I [Slackia heliotrinireducens DSM 20476] gi|256791983|gb|ACV22653.1| DNA/RNA helicase, superfamily I [Slackia heliotrinireducens DSM 20476] Length = 772 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 45/171 (26%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 ID +++ + E +L ++ V A AGSGKT +L R+ ++ N P ++ +T T Sbjct: 4 IDSLNEPQREAVLCTEG--PLLVLAGAGSGKTRVLTYRIAHMVQDLNVPPWQIMAITFTN 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ AR G+ Sbjct: 62 KAANEMRERLGRLVG---------------------------PSAR-----------GMW 83 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 V T H+ C I++ + F I D++ +K+L+ K +A + LD Sbjct: 84 VSTFHSMCVRILRVDCELLGFSKSFTIYDDDDTKRLL----KDVMAGLDLD 130 >gi|163857120|ref|YP_001631418.1| DNA helicase II [Bordetella petrii DSM 12804] gi|163260848|emb|CAP43150.1| DNA helicase II [Bordetella petrii] Length = 752 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 ++ Q EQ A + + A V A AGSGKT +L R+ L+ A P LL +T T Sbjct: 1 MLEQLNPEQRAAVTLEPQHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFGLLAVTFTNK 60 Query: 74 AAAEMSHRV 82 AA EM R+ Sbjct: 61 AAREMLARM 69 >gi|154506234|ref|ZP_02042972.1| hypothetical protein RUMGNA_03776 [Ruminococcus gnavus ATCC 29149] gi|153793733|gb|EDN76153.1| hypothetical protein RUMGNA_03776 [Ruminococcus gnavus ATCC 29149] Length = 744 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 D +++ + E + +D + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 5 DTLNEQQREAVYCTDG--PLLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNK 62 Query: 74 AAAEMSHRVLEII 86 AA EM RV ++ Sbjct: 63 AAGEMRERVDNLV 75 >gi|330837148|ref|YP_004411789.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374] gi|329749051|gb|AEC02407.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374] Length = 808 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 52/174 (29%) Query: 23 EQLLA--SDPTRSA--------WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++LLA ++P R A V A AGSGKT ++ ++ + A P +L +T T Sbjct: 14 DELLAGLNEPQREAVLENSAPLLVLAGAGSGKTRVITTKIAWCIRALGIAPWKILAVTFT 73 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RVL ++ P+ + P Sbjct: 74 NKAAGEMRDRVLAMV----------------------PDAN---------------PQDF 96 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA----KKSTLASIM 181 ++T H+F +++ + S F I D+E S L+ A KK L+ M Sbjct: 97 MIRTFHSFGAWFLRRHGELLGLNSGFTIYDDEDSLSLLASAYPEFKKKELSPYM 150 >gi|316933213|ref|YP_004108195.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1] gi|315600927|gb|ADU43462.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1] Length = 863 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A P+ +L +T T AA EM R+ +++ Sbjct: 55 VLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNKAAREMKLRLGQML 106 >gi|260590017|ref|ZP_05855930.1| ATP-dependent DNA helicase PcrA [Blautia hansenii DSM 20583] gi|331084334|ref|ZP_08333438.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 6_1_63FAA] gi|260539529|gb|EEX20098.1| ATP-dependent DNA helicase PcrA [Blautia hansenii DSM 20583] gi|330401598|gb|EGG81179.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 6_1_63FAA] Length = 736 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ +P ++ +T T AA EM RV +I+ Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTNKAAGEMRERVDKIV 75 >gi|81429165|ref|YP_396166.1| ATP-dependent DNA helicase [Lactobacillus sakei subsp. sakei 23K] gi|78610808|emb|CAI55859.1| ATP-dependent DNA helicase [Lactobacillus sakei subsp. sakei 23K] Length = 749 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L RV L+ H P +L +T T AA EM RV ++ Sbjct: 27 IMAGAGSGKTRVLTHRVA-YLIEEKHVLPWRILAITFTNKAAREMRERVGNLL 78 >gi|269796045|ref|YP_003315500.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542] gi|269098230|gb|ACZ22666.1| DNA/RNA helicase, superfamily I [Sanguibacter keddieii DSM 10542] Length = 1111 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 6/74 (8%) Query: 11 SETIDLISQ---TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTL 65 ++ DL+ Q T + + P V A AGSGKT + RV+ L+AN P + Sbjct: 11 ADIADLLGQHRPTPEQTAVIEAPLAPMLVVAGAGSGKTETMSARVV-WLIANGLVEPQEV 69 Query: 66 LCLTHTKAAAAEMS 79 L LT T+ AA E+S Sbjct: 70 LGLTFTRKAAGELS 83 >gi|218512941|ref|ZP_03509781.1| exonuclease RexA [Rhizobium etli 8C-3] Length = 144 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 21/149 (14%) Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 LL +T T+AAA EM R+ E +Q ++SD + +H + Sbjct: 8 LLIVTFTEAAAREMKERIQE------------------ALQESVNSESDPVRRQHFTKQL 49 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 + P + T+HAFC +++++ +I F + +E L++E L + Sbjct: 50 VLLPTA-NISTLHAFCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAE 108 Query: 185 NEELKKAFYEILEISNDEDIETLISDIIS 213 N+E + F + SND + L + + S Sbjct: 109 NDE--RFFQLTMNFSNDRSDDGLTNLVFS 135 >gi|184155952|ref|YP_001844292.1| ATP-dependent DNA helicase [Lactobacillus fermentum IFO 3956] gi|183227296|dbj|BAG27812.1| ATP-dependent DNA helicase [Lactobacillus fermentum IFO 3956] Length = 756 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 3/53 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L R+ L+ H P +L +T T AA EM RV +++ Sbjct: 27 VMAGAGSGKTRVLTHRIA-YLIEERHVLPWHILAITFTNKAAREMKERVAKLL 78 >gi|163783724|ref|ZP_02178711.1| ATP-dependent DNA helicase REP [Hydrogenivirga sp. 128-5-R1-1] gi|159881049|gb|EDP74566.1| ATP-dependent DNA helicase REP [Hydrogenivirga sp. 128-5-R1-1] Length = 167 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT L +V +L P ++LC+T T AA E+ RV + Sbjct: 19 VVAGAGSGKTKTLAHKVEFILSELGAPRESVLCITFTNKAAKEIGERVYSV 69 >gi|188583340|ref|YP_001926785.1| UvrD/REP helicase [Methylobacterium populi BJ001] gi|179346838|gb|ACB82250.1| UvrD/REP helicase [Methylobacterium populi BJ001] Length = 1143 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 9/63 (14%) Query: 29 DPTRSAWVS---------ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 DP++ A V+ A G+GKT LV+R+ L+ P+ +L LT + AAAE+ Sbjct: 196 DPSQDAAVAHRGGPYLLQAGPGTGKTRTLVRRIESLVDEGIDPNGILVLTFSNKAAAELM 255 Query: 80 HRV 82 R+ Sbjct: 256 DRL 258 >gi|257463715|ref|ZP_05628104.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D12] gi|317061259|ref|ZP_07925744.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D12] gi|313686935|gb|EFS23770.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D12] Length = 717 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTL-LCLTHTKAAAAEMSHRVLEII 86 A AGSGKT + R+ ++ P+ L L +T T AA EM RV+ +I Sbjct: 26 AGAGSGKTRTITYRIAHMIEELGIPAYLILAVTFTNKAAKEMKERVISLI 75 >gi|46205528|ref|ZP_00048428.2| COG0210: Superfamily I DNA and RNA helicases [Magnetospirillum magnetotacticum MS-1] Length = 239 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 27/47 (57%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 + A G+GKT LV R+ RLL A S +L LT + AA E+ R+ Sbjct: 107 LQAGPGTGKTRTLVSRIERLLDRGATASEILVLTFSNKAAGELVERL 153 >gi|312867706|ref|ZP_07727912.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis F0405] gi|311096769|gb|EFQ55007.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis F0405] Length = 761 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R ++ A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKERAYQLNPA 78 >gi|261392848|emb|CAX50429.1| exodeoxyribonuclease V beta chain [Neisseria meningitidis 8013] Length = 1204 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L + +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130 + + L D+ LS I + +K D + R LI L+ G Sbjct: 81 SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + LI Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178 >gi|310657865|ref|YP_003935586.1| ATP-dependent DNA helicase [Clostridium sticklandii DSM 519] gi|308824643|emb|CBH20681.1| ATP-dependent DNA helicase [Clostridium sticklandii] Length = 720 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT ++ R+ ++ P ++L +T T AA EM RV +I Sbjct: 25 AGAGSGKTRVITYRIAHMIEDLKISPYSILAITFTNKAAKEMKERVSALI 74 >gi|296876758|ref|ZP_06900806.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC 15912] gi|296432260|gb|EFH18059.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC 15912] Length = 767 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R ++ A Sbjct: 31 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKERAYQLNPA 84 >gi|294625145|ref|ZP_06703789.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600564|gb|EFF44657.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 728 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69 S +D ++ + E + S P V A AGSGKT +L+ R+ L P+ + +T Sbjct: 4 SHLLDHLNPAQREAV--SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVT 61 Query: 70 HTKAAAAEMSHR 81 T AA EM HR Sbjct: 62 FTNKAAGEMRHR 73 >gi|189183408|ref|YP_001937193.1| DNA helicase II [Orientia tsutsugamushi str. Ikeda] gi|189180179|dbj|BAG39959.1| DNA helicase II [Orientia tsutsugamushi str. Ikeda] Length = 716 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 V A AG+GKT ++ R+ ++ A P +L +T T AA EM R+ EI Sbjct: 25 VLAGAGTGKTRVITYRIAYIIDQFMALPEEILAVTFTNKAATEMQSRIAEI 75 >gi|188579188|ref|YP_001916117.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523640|gb|ACD61585.1| DNA helicase II [Xanthomonas oryzae pv. oryzae PXO99A] Length = 728 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69 S +D ++ + E + S P V A AGSGKT +L+ R+ L P+ + +T Sbjct: 4 SHLLDHLNPAQREAV--SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVT 61 Query: 70 HTKAAAAEMSHR 81 T AA EM HR Sbjct: 62 FTNKAAGEMRHR 73 >gi|167718946|ref|ZP_02402182.1| exodeoxyribonuclease V, beta subunit [Burkholderia pseudomallei DM98] Length = 360 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P + + R L + + TIHAFC+ Sbjct: 87 TGDDGGDPFIARLFETTLAPERGLDPQTA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|166710261|ref|ZP_02241468.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzicola BLS256] Length = 728 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69 S +D ++ + E + S P V A AGSGKT +L+ R+ L P+ + +T Sbjct: 4 SHLLDHLNPAQREAV--SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVT 61 Query: 70 HTKAAAAEMSHR 81 T AA EM HR Sbjct: 62 FTNKAAGEMRHR 73 >gi|116873192|ref|YP_849973.1| ATP-dependent DNA helicase PcrA [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742070|emb|CAK21194.1| ATP-dependent DNA helicase, PcrA family [Listeria welshimeri serovar 6b str. SLCC5334] Length = 733 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +L+ EQ A + T + A AGSGKT +L R+ L+ + +P +L +T T Sbjct: 7 ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERSVNPYNILAITFTN 66 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 67 KAAREMKSRI 76 >gi|21244868|ref|NP_644450.1| DNA-dependent helicase II [Xanthomonas axonopodis pv. citri str. 306] gi|21110576|gb|AAM38986.1| DNA helicase II [Xanthomonas axonopodis pv. citri str. 306] Length = 730 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69 S +D ++ + E + S P V A AGSGKT +L+ R+ L P+ + +T Sbjct: 6 SHLLDHLNPAQREAV--SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVT 63 Query: 70 HTKAAAAEMSHR 81 T AA EM HR Sbjct: 64 FTNKAAGEMRHR 75 >gi|304387905|ref|ZP_07370078.1| exodeoxyribonuclease V beta subunit [Neisseria meningitidis ATCC 13091] gi|304338002|gb|EFM04139.1| exodeoxyribonuclease V beta subunit [Neisseria meningitidis ATCC 13091] Length = 1212 Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L + +L +T TKAA AE+ R VL+++ Sbjct: 29 IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 88 Query: 88 A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130 + + L D+ LS I + +K D + R LI L+ G Sbjct: 89 SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 147 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + LI Sbjct: 148 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 186 >gi|154252878|ref|YP_001413702.1| UvrD/REP helicase [Parvibaculum lavamentivorans DS-1] gi|154156828|gb|ABS64045.1| UvrD/REP helicase [Parvibaculum lavamentivorans DS-1] Length = 778 Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ LL A P +L +T T AA EM R+ +I Sbjct: 53 VLAGAGTGKTRVLTTRLAHLLATRKAWPGQILAVTFTNKAAREMRDRIGALI 104 >gi|75676545|ref|YP_318966.1| UvrD/REP helicase [Nitrobacter winogradskyi Nb-255] gi|74421415|gb|ABA05614.1| ATP-dependent DNA helicase, Rep family [Nitrobacter winogradskyi Nb-255] Length = 816 Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A +L +T T AA EM HR+ +++ Sbjct: 55 VLAGAGTGKTRVLTTRIAHILSQGRARSGEILSVTFTNKAAREMKHRLGQML 106 >gi|54026512|ref|YP_120754.1| putative helicase [Nocardia farcinica IFM 10152] gi|54018020|dbj|BAD59390.1| putative helicase [Nocardia farcinica IFM 10152] Length = 1255 Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V G+GKT +LV + A A P+++L LTH+K AAA++ V Sbjct: 48 VLGGPGTGKTALLVDLAAGRIAAGADPASVLVLTHSKQAAADLRDAV 94 >gi|325265844|ref|ZP_08132530.1| ATP-dependent DNA helicase Rep [Kingella denitrificans ATCC 33394] gi|324982482|gb|EGC18108.1| ATP-dependent DNA helicase Rep [Kingella denitrificans ATCC 33394] Length = 684 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 14/108 (12%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLE--------- 84 +V A AGSGKT +++++++ ++ + P + +T T AA EM R+ Sbjct: 38 FVLAGAGSGKTRVIIEKIVHMITRCGYKPYHIAAITFTNKAANEMQERIAHRLGKEQTRG 97 Query: 85 -IITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPG 129 I+ + L IL + + G K N S D S ++ +L IL + G Sbjct: 98 LTISTFHSLGMRILREDAPSV-GYKRNFSVLDASDSQKILTEILGSSG 144 >gi|313890094|ref|ZP_07823729.1| ATP-dependent DNA helicase PcrA [Streptococcus pseudoporcinus SPIN 20026] gi|313121455|gb|EFR44559.1| ATP-dependent DNA helicase PcrA [Streptococcus pseudoporcinus SPIN 20026] Length = 759 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R L + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKCINPWNILAITFTNKAAHEMRERALALNPA 78 >gi|303252517|ref|ZP_07338680.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247266|ref|ZP_07529315.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648485|gb|EFL78678.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856239|gb|EFM88393.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 672 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T + V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMRERV 67 >gi|212702577|ref|ZP_03310705.1| hypothetical protein DESPIG_00601 [Desulfovibrio piger ATCC 29098] gi|212674018|gb|EEB34501.1| hypothetical protein DESPIG_00601 [Desulfovibrio piger ATCC 29098] Length = 1095 Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 61/143 (42%), Gaps = 31/143 (21%) Query: 36 VSANAGSGKTHILVQRVLRLL---------------LANAHPS---TLLCLTHTKAAAAE 77 V A+AGSGKT+ L +R L LL L N PS +L +T T AAA E Sbjct: 7 VKASAGSGKTYDLTRRFLCLLAACGSPAPAAAASCGLGNG-PSGWDEILAITFTNAAAGE 65 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV+ + A + + E P DM A L IL L ++TI Sbjct: 66 MRDRVIGRLKAIALGTPE----------KDIPLTPDM--AARWLDVILRDLASLNIRTID 113 Query: 138 AFCEAIMQQFPLEANITSHFAIA 160 + AI++ L+ ++ F A Sbjct: 114 SLLHAIVRSASLQLDLPPDFQPA 136 >gi|167893639|ref|ZP_02481041.1| putative exodeoxyribonuclease V beta chain [Burkholderia pseudomallei 7894] Length = 343 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL + +L +T TKAA AE+ R+ + +H D Sbjct: 27 IEASAGTGKTWNICALYVRLLLEKDLGADEILVVTFTKAATAELHERIRARLAQLAHALD 86 Query: 95 -----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + +G P + + R L + + TIHAFC+ Sbjct: 87 TGDDGGDPFIARLFETTLAPERGLDPQTA-AKRVRRALRAFDQA----AIHTIHAFCQRA 141 Query: 144 MQQ 146 +Q+ Sbjct: 142 LQE 144 >gi|91775555|ref|YP_545311.1| ATP-dependent DNA helicase Rep [Methylobacillus flagellatus KT] gi|91709542|gb|ABE49470.1| ATP-dependent DNA helicase Rep [Methylobacillus flagellatus KT] Length = 690 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++ Q++ L+ + P + +T T AA EM RV +++ Sbjct: 44 VLAGAGSGKTRVITQKISYLIEQCGYAPKEIAAITFTNKAAREMQERVGQLLQG 97 >gi|89097085|ref|ZP_01169976.1| PcrA [Bacillus sp. NRRL B-14911] gi|89088465|gb|EAR67575.1| PcrA [Bacillus sp. NRRL B-14911] Length = 746 Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT +L R+ L++ +P +L +T T AA EM R+ Sbjct: 29 IMAGAGSGKTRVLTHRIGYLMVEKGVNPYNILAITFTNKAAREMRERI 76 >gi|253688921|ref|YP_003018111.1| UvrD/REP helicase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755499|gb|ACT13575.1| UvrD/REP helicase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 685 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R L+ A P +L L + AA EM+ R+ E Sbjct: 214 VLAGAGSGKTSVLVARAAWLMHRQEAAPDQILLLAFGRKAAEEMNERIQE 263 >gi|165975735|ref|YP_001651328.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875836|gb|ABY68884.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 672 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T + V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMRERV 67 >gi|77464192|ref|YP_353696.1| DNA helicase [Rhodobacter sphaeroides 2.4.1] gi|77388610|gb|ABA79795.1| Possible DNA helicase [Rhodobacter sphaeroides 2.4.1] Length = 1715 Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 29/129 (22%) Query: 23 EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 ++++A D + V A GSGKT +LV R+ LL + P +L L++ + AAAE+ Sbjct: 1103 QEIVADDREETNVLVLAGPGSGKTRVLVHRIAYLLRVKREDPRGILVLSYNRHAAAEIRA 1162 Query: 81 RVLEII---------------------------TAWSHLSDEILSAEITKIQGKKPNKSD 113 R+ ++ TA H ++L + +I G+ ++++ Sbjct: 1163 RLRHLVGEDAARVTVSTCHALAMRLVGASFTGGTAEQHDFQDVLREAVRQINGEGLSRTE 1222 Query: 114 MSKARHLLI 122 R LI Sbjct: 1223 AEAQREALI 1231 >gi|317505660|ref|ZP_07963563.1| DNA polymerase III, epsilon subunit [Prevotella salivae DSM 15606] gi|315663245|gb|EFV03009.1| DNA polymerase III, epsilon subunit [Prevotella salivae DSM 15606] Length = 901 Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 25/47 (53%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A+ G GKT IL +RV + S +LCLT T AA M R+ Sbjct: 24 VLASPGCGKTQILAERVAKAYAMGVSFSNMLCLTFTNRAARGMQERI 70 >gi|294631280|ref|ZP_06709840.1| UvrD/Rep family helicase [Streptomyces sp. e14] gi|292834613|gb|EFF92962.1| UvrD/Rep family helicase [Streptomyces sp. e14] Length = 988 Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 P + A AGSGKT ++ RV+ L+ P +L LT T AA E++ RV Sbjct: 38 PPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAAGELAERV 91 >gi|294666234|ref|ZP_06731487.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604007|gb|EFF47405.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 728 Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69 S +D ++ + E + S P V A AGSGKT +L+ R+ L P+ + +T Sbjct: 4 SHLLDHLNPAQREAV--SAPPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVT 61 Query: 70 HTKAAAAEMSHR 81 T AA EM HR Sbjct: 62 FTNKAAGEMRHR 73 >gi|290957554|ref|YP_003488736.1| ATP-dependent DNA helicase [Streptomyces scabiei 87.22] gi|260647080|emb|CBG70179.1| putative ATP-dependent DNA helicase [Streptomyces scabiei 87.22] Length = 1223 Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 P + A AGSGKT ++ RV+ L+ P +L LT T AA E++ RV Sbjct: 40 PPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAAGELAERV 93 >gi|21223553|ref|NP_629332.1| ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)] gi|9714472|emb|CAC01314.1| putative ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)] Length = 1222 Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 P + A AGSGKT ++ RV+ L+ P +L LT T AA E++ RV Sbjct: 81 PPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAAGELAERV 134 >gi|313890533|ref|ZP_07824161.1| ATP-dependent nuclease subunit A [Streptococcus pseudoporcinus SPIN 20026] gi|313121050|gb|EFR44161.1| ATP-dependent nuclease subunit A [Streptococcus pseudoporcinus SPIN 20026] Length = 1217 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 23/155 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW-SHLSD 94 VSA+AGSGKT ++V+R++ ++ + T T AA E+ R+ + A SD Sbjct: 45 VSASAGSGKTFVMVERIIDKVMRGIAIDEMFISTFTVKAATELKERLEKRFLALIKESSD 104 Query: 95 EILSAEIT-KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 A + ++QG +S+A + T+ AF + ++ Q+ I Sbjct: 105 AEWKAYLNQQLQG-------ISQA--------------DIGTMDAFTQKLLSQYSYTLGI 143 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + F I ++ + +++ ++ + +D+ E L Sbjct: 144 SPKFRIMQDKSEQDILKNRIYESIFANYMDSKESL 178 >gi|317127162|ref|YP_004093444.1| ATP-dependent DNA helicase PcrA [Bacillus cellulosilyticus DSM 2522] gi|315472110|gb|ADU28713.1| ATP-dependent DNA helicase PcrA [Bacillus cellulosilyticus DSM 2522] Length = 760 Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 9/78 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEI--------I 86 + A AGSGKT +L R+ L+ P ++L +T T AA EM RV I I Sbjct: 29 IMAGAGSGKTRVLTHRIAYLIGEKGVPPWSILAITFTNKAAREMKERVARIASTAEEIWI 88 Query: 87 TAWSHLSDEILSAEITKI 104 + + + IL +I +I Sbjct: 89 STFHSMCVRILRRDIDRI 106 >gi|257452062|ref|ZP_05617361.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 3_1_5R] gi|257466139|ref|ZP_05630450.1| ATP-dependent DNA helicase pcrA [Fusobacterium gonidiaformans ATCC 25563] gi|315917297|ref|ZP_07913537.1| ATP-dependent DNA helicase pcrA [Fusobacterium gonidiaformans ATCC 25563] gi|317058610|ref|ZP_07923095.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 3_1_5R] gi|313684286|gb|EFS21121.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 3_1_5R] gi|313691172|gb|EFS28007.1| ATP-dependent DNA helicase pcrA [Fusobacterium gonidiaformans ATCC 25563] Length = 717 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 39/134 (29%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTL-LCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT + R+ ++ P L L +T T AA EM RV+ +I Sbjct: 26 AGAGSGKTRTITYRIAHMIEELGIPPYLILAVTFTNKAAKEMKERVISLI---------- 75 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 G++ ++ +S T H+F +++ + + ++ Sbjct: 76 ---------GEEAERATIS-------------------TFHSFGVRLLRMYGSKLGYQAN 107 Query: 157 FAIADEEQSKKLIE 170 F I D E K++I+ Sbjct: 108 FTIYDVEDQKRIIK 121 >gi|225020706|ref|ZP_03709898.1| hypothetical protein CORMATOL_00713 [Corynebacterium matruchotii ATCC 33806] gi|224946652|gb|EEG27861.1| hypothetical protein CORMATOL_00713 [Corynebacterium matruchotii ATCC 33806] Length = 697 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 + I+L +Q A+ P + A AG+GKT + R+ L+ + ++ +T Sbjct: 3 TPVINLGDLDADQQQAATAPRGPVAILAGAGTGKTRTITYRIAHLIDQGFVGGNRVMAVT 62 Query: 70 HTKAAAAEMSHRV 82 TK AA EM+HR+ Sbjct: 63 FTKRAAGEMAHRL 75 >gi|221640075|ref|YP_002526337.1| DNA helicase [Rhodobacter sphaeroides KD131] gi|221160856|gb|ACM01836.1| DNA helicase [Rhodobacter sphaeroides KD131] Length = 1695 Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%) Query: 23 EQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 ++++A D + V A GSGKT +LV R+ LL + P +L L++ + AAAE+ Sbjct: 1083 QEIVADDREETNVLVLAGPGSGKTRVLVHRIAYLLRVKREDPRGILVLSYNRHAAAEIRA 1142 Query: 81 RVLEII 86 R+ ++ Sbjct: 1143 RLRHLV 1148 >gi|119470385|ref|ZP_01613113.1| Rep helicase, a single-stranded DNA-dependent ATPase [Alteromonadales bacterium TW-7] gi|119446310|gb|EAW27586.1| Rep helicase, a single-stranded DNA-dependent ATPase [Alteromonadales bacterium TW-7] Length = 672 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 12/88 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEI--------- 85 V A AGSGKT ++ ++ L+ + + + +T T AA EM RVL+ Sbjct: 20 VLAGAGSGKTRVITNKIAYLVQKCEYKARNIAAVTFTNKAAKEMRERVLQTLGKQEAKGL 79 Query: 86 -ITAWSHLSDEILSAEITKIQGKKPNKS 112 ++ + L EI+ EIT + G KP S Sbjct: 80 WVSTFHTLGLEIIKKEITTL-GFKPGFS 106 >gi|33594191|ref|NP_881835.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I] gi|33564266|emb|CAE43558.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I] Length = 689 Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust. Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 38/137 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ LL + ++ LT T AA EM+ RV ++ D Sbjct: 29 VLAGAGSGKTRVITQKMAYLLRECGYMGRNIVALTFTNKAAREMAERVKTLV-------D 81 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 L+ GL + T HA ++++ A + Sbjct: 82 PKLAK------------------------------GLTISTFHALGVRLLREEAAHAGLK 111 Query: 155 SHFAIADEEQSKKLIEE 171 F+I D + + +I+E Sbjct: 112 PQFSILDADDAMSIIQE 128 >gi|307256307|ref|ZP_07538090.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865133|gb|EFM97033.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 672 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T + V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMRERV 67 >gi|42520776|ref|NP_966691.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410516|gb|AAS14625.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila melanogaster] Length = 638 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 A AG+GKT + R+ ++ +A+ +L +T T AA EM RVLE+ Sbjct: 27 AGAGTGKTRTITSRIAHIIRNGHAYSDEILAVTFTNKAANEMVSRVLEL 75 >gi|331702041|ref|YP_004399000.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri NRRL B-30929] gi|329129384|gb|AEB73937.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri NRRL B-30929] Length = 744 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ ++ N P +L +T T AA EM RV +++ Sbjct: 27 IMAGAGSGKTRVLTHRIAYIIEHNHIMPWRILAITFTNKAAREMRERVSKLL 78 >gi|323351871|ref|ZP_08087522.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis VMC66] gi|322121928|gb|EFX93660.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis VMC66] Length = 762 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 + A AGSGKT +L+ R+ L+ +P +L +T T AA EM R ++ T Sbjct: 25 IMAGAGSGKTRVLIHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77 >gi|315613237|ref|ZP_07888147.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis ATCC 49296] gi|315314799|gb|EFU62841.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis ATCC 49296] Length = 763 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 V A AGSGKT +L R+ L+ +P +L +T T AA EM R Sbjct: 25 VMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKER 71 >gi|187931893|ref|YP_001891878.1| UvrD/REP superfamily I DNA and RNA helicase [Francisella tularensis subsp. mediasiatica FSC147] gi|187712802|gb|ACD31099.1| UvrD/REP superfamily I DNA and RNA helicase [Francisella tularensis subsp. mediasiatica FSC147] Length = 671 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++++++ L+ +P+ ++L +T T AA +M RV Sbjct: 22 VLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKKMQERV 69 >gi|154489095|ref|ZP_02029944.1| hypothetical protein BIFADO_02407 [Bifidobacterium adolescentis L2-32] gi|154083232|gb|EDN82277.1| hypothetical protein BIFADO_02407 [Bifidobacterium adolescentis L2-32] Length = 666 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVL 83 V A AG+GKT +V + LL A P +L L+ TKA+A EMS R++ Sbjct: 125 VLAGAGTGKTTTIVGYIAWLLATKRATPEEILVLSFTKASADEMSQRIM 173 >gi|17231987|ref|NP_488535.1| DNA helicase II [Nostoc sp. PCC 7120] gi|17133631|dbj|BAB76194.1| DNA helicase II [Nostoc sp. PCC 7120] Length = 772 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT L R+ L+L + P +L +T T AA EM R+ Sbjct: 26 VVAGAGSGKTRALTYRIANLILKHRVAPENILAVTFTNKAAREMKERI 73 >gi|115524150|ref|YP_781061.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53] gi|115518097|gb|ABJ06081.1| ATP-dependent DNA helicase, Rep family [Rhodopseudomonas palustris BisA53] Length = 846 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L + A P +L +T T AA EM R+ +++ Sbjct: 59 VLAGAGTGKTRVLTSRIAHILSSGRARPGEILSVTFTNKAAREMKLRLGQML 110 >gi|319788484|ref|YP_004147959.1| ATP-dependent DNA helicase Rep [Pseudoxanthomonas suwonensis 11-1] gi|317466996|gb|ADV28728.1| ATP-dependent DNA helicase Rep [Pseudoxanthomonas suwonensis 11-1] Length = 657 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++V+++ L+ + +P+ + +T T +A EM RV + I Sbjct: 19 VLAGAGSGKTRVIVEKIAHLIASGRYPARRIAAITFTNKSAKEMRERVAKRIRG 72 >gi|307249494|ref|ZP_07531482.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858487|gb|EFM90555.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 672 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T + V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMRERV 67 >gi|169630597|ref|YP_001704246.1| ATP-dependent DNA helicase [Mycobacterium abscessus ATCC 19977] gi|169242564|emb|CAM63592.1| Probable ATP-dependent DNA helicase [Mycobacterium abscessus] Length = 1058 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 LL D T V +G+GKT +LV V A +P+++L LT + A+AE+ +R+ Sbjct: 18 LLDPDRTGRFVVVGGSGTGKTSLLVDIVAAHTAAGVNPASVLVLTGSNRASAELRNRI 75 >gi|39936568|ref|NP_948844.1| UvrD/REP helicase [Rhodopseudomonas palustris CGA009] gi|39650424|emb|CAE28947.1| DNA helicase II [Rhodopseudomonas palustris CGA009] Length = 848 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A P+ +L +T T AA EM R+ +++ Sbjct: 55 VLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNKAAREMKLRLGQML 106 >gi|308377259|ref|ZP_07441669.2| UvrD/REP helicase subfamily [Mycobacterium tuberculosis SUMu008] gi|308348310|gb|EFP37161.1| UvrD/REP helicase subfamily [Mycobacterium tuberculosis SUMu008] Length = 695 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 3/79 (3%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPS 63 S E + + L T + + + P V A AG+GKT + RV+ L+AN A P Sbjct: 54 SPAELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPG 112 Query: 64 TLLCLTHTKAAAAEMSHRV 82 +L LT T+ AA ++ RV Sbjct: 113 QVLGLTFTRKAAGQLLRRV 131 >gi|52079148|ref|YP_077939.1| ATP-dependent DNA helicase [Bacillus licheniformis ATCC 14580] gi|52784515|ref|YP_090344.1| PcrA [Bacillus licheniformis ATCC 14580] gi|52002359|gb|AAU22301.1| ATP-dependent DNA helicase [Bacillus licheniformis ATCC 14580] gi|52347017|gb|AAU39651.1| PcrA [Bacillus licheniformis ATCC 14580] Length = 739 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ P +L +T T AA EM RV I+ Sbjct: 29 IMAGAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFTNKAAREMKERVESIL 80 >gi|325142010|gb|EGC64442.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis 961-5945] gi|325198004|gb|ADY93460.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis G2136] Length = 1204 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L + +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130 + + L D+ LS I + +K D + R LI L+ G Sbjct: 81 SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + LI Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178 >gi|325133701|gb|EGC56357.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis M13399] Length = 1204 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L + +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130 + + L D+ LS I + +K D + R LI L+ G Sbjct: 81 SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + LI Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178 >gi|303249563|ref|ZP_07335770.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251810|ref|ZP_07533712.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651637|gb|EFL81786.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860717|gb|EFM92728.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 672 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T + V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMRERV 67 >gi|166367339|ref|YP_001659612.1| ATP-dependent helicase [Microcystis aeruginosa NIES-843] gi|166089712|dbj|BAG04420.1| ATP-dependent helicase [Microcystis aeruginosa NIES-843] Length = 773 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 13 TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTH 70 T D + Q Q LA + V A AGSGKT L R+ L+ + P +L +T Sbjct: 4 TADYLEQLNPSQRLAVEHFCGPLLVVAGAGSGKTSALTYRIAHLIRHHGVDPENILAVTF 63 Query: 71 TKAAAAEMSHRV 82 T AA EM R+ Sbjct: 64 TNKAAREMKTRI 75 >gi|161869731|ref|YP_001598898.1| exodeoxyribonuclease V beta subunit [Neisseria meningitidis 053442] gi|161595284|gb|ABX72944.1| exodeoxyribonuclease V beta subunit [Neisseria meningitidis 053442] Length = 1204 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L + +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130 + + L D+ LS I + +K D + R LI L+ G Sbjct: 81 SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + LI Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178 >gi|75909567|ref|YP_323863.1| ATP-dependent DNA helicase Rep [Anabaena variabilis ATCC 29413] gi|75703292|gb|ABA22968.1| ATP-dependent DNA helicase, Rep family [Anabaena variabilis ATCC 29413] Length = 772 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT L R+ L+L + P +L +T T AA EM R+ Sbjct: 26 VVAGAGSGKTRALTYRIANLILKHRVAPENILAVTFTNKAAREMKERI 73 >gi|71899705|ref|ZP_00681857.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1] gi|71730500|gb|EAO32579.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1] Length = 723 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 3/70 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72 +D ++Q + E + A+ P + A AGSGKT +L R++ L N P+ +++ +T T Sbjct: 2 LDHLNQNQREAVAAA-PGHYL-ILAGAGSGKTRVLTHRIVWLNEVNGVPTHSMMAVTFTN 59 Query: 73 AAAAEMSHRV 82 AA E+ R+ Sbjct: 60 KAAGEIQQRI 69 >gi|330427927|gb|AEC19261.1| DNA helicase II [Pusillimonas sp. T7-7] Length = 761 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76 S +Q + P A V A AGSGKT +L R+ L+ + A P L+ +T T +A Sbjct: 4 SLNPQQQAAVTLPPAHALVLAGAGSGKTRVLTTRMAWLIQTSQASPFGLMAVTFTNKSAR 63 Query: 77 EMSHRV 82 EM R+ Sbjct: 64 EMLTRL 69 >gi|325202419|gb|ADY97873.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis M01-240149] gi|325207829|gb|ADZ03281.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis NZ-05/33] Length = 1204 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L + +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130 + + L D+ LS I + +K D + R LI L+ G Sbjct: 81 SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + LI Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178 >gi|308388971|gb|ADO31291.1| putative exodeoxyribonuclease V beta chain [Neisseria meningitidis alpha710] gi|325129902|gb|EGC52703.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis OX99.30304] gi|325135992|gb|EGC58602.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis M0579] Length = 1204 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L + +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130 + + L D+ LS I + +K D + R LI L+ G Sbjct: 81 SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + LI Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178 >gi|307260740|ref|ZP_07542429.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869579|gb|EFN01367.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 672 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T + V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMRERV 67 >gi|149377922|ref|ZP_01895650.1| Superfamily I DNA and RNA helicase [Marinobacter algicola DG893] gi|149357812|gb|EDM46306.1| Superfamily I DNA and RNA helicase [Marinobacter algicola DG893] Length = 789 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 A ++A AGSGKT L R+ LL P+ +L L +AA + H++ E+ + + Sbjct: 61 AVITAVAGSGKTSTLAWRIRYLLQQGHDPARMLVLMFNRAARVDFEHKLQEVTRHLTLAT 120 Query: 94 DEI 96 EI Sbjct: 121 PEI 123 >gi|91202090|emb|CAJ75150.1| similar to DNA helicase [Candidatus Kuenenia stuttgartiensis] Length = 641 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A GSGKT +L R+ R+L + +L LT T AAAE+ RV +++ Sbjct: 24 VLAGPGSGKTSVLTHRIARILEQSKGQHFRILALTFTNKAAAEVRGRVEKLVPG 77 >gi|71275503|ref|ZP_00651789.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Dixon] gi|71900751|ref|ZP_00682872.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1] gi|170729288|ref|YP_001774721.1| DNA-dependent helicase II [Xylella fastidiosa M12] gi|71163803|gb|EAO13519.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Dixon] gi|71729481|gb|EAO31591.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1] gi|167964081|gb|ACA11091.1| DNA helicase II [Xylella fastidiosa M12] Length = 723 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 3/70 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72 +D ++Q + E + A+ P + A AGSGKT +L R++ L N P+ +++ +T T Sbjct: 2 LDHLNQNQREAVAAA-PGHYL-ILAGAGSGKTRVLTHRIVWLNEVNGVPTHSMMAVTFTN 59 Query: 73 AAAAEMSHRV 82 AA E+ R+ Sbjct: 60 KAAGEIQQRI 69 >gi|58696814|ref|ZP_00372342.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila simulans] gi|225630630|ref|YP_002727421.1| DNA helicase II [Wolbachia sp. wRi] gi|58536984|gb|EAL60139.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila simulans] gi|225592611|gb|ACN95630.1| DNA helicase II [Wolbachia sp. wRi] Length = 638 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 A AG+GKT + R+ ++ +A+ +L +T T AA EM RVLE+ Sbjct: 27 AGAGTGKTRTITSRIAHIIRNGHAYSDEILAVTFTNKAANEMVSRVLEL 75 >gi|317486027|ref|ZP_07944881.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6] gi|316922705|gb|EFV43937.1| UvrD/REP helicase [Bilophila wadsworthia 3_1_6] Length = 741 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 36/73 (49%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 ID+ + ++ + P V A AGSGKT +V R+ L S +L LT T+ Sbjct: 2 IDISTLNPAQLEAVTAPDGPVLVIAGAGSGKTRTIVHRLAWLAEQGVPASDMLLLTFTRK 61 Query: 74 AAAEMSHRVLEII 86 A+ EM R +++ Sbjct: 62 ASREMLLRATDLL 74 >gi|285019926|ref|YP_003377637.1| ATP-dependent DNA helicase [Xanthomonas albilineans GPE PC73] gi|283475144|emb|CBA17643.1| probable atp-dependent dna helicase protein [Xanthomonas albilineans] Length = 658 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++V+++ L+ + +P+ + +T T +A EM RV + I Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIASGRYPAKRIAAITFTNKSAKEMRERVAKRI 72 >gi|192292387|ref|YP_001992992.1| UvrD/REP helicase [Rhodopseudomonas palustris TIE-1] gi|192286136|gb|ACF02517.1| UvrD/REP helicase [Rhodopseudomonas palustris TIE-1] Length = 848 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A P+ +L +T T AA EM R+ +++ Sbjct: 55 VLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNKAAREMKLRLGQML 106 >gi|71657390|ref|XP_817211.1| ATP-dependent DNA helicase [Trypanosoma cruzi strain CL Brener] gi|70882388|gb|EAN95360.1| ATP-dependent DNA helicase, putative [Trypanosoma cruzi] Length = 834 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%) Query: 11 SETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 +E L+S Q A D + S + A AGSGKT + R+ ++L+ P +L L Sbjct: 24 AECERLVSALDEAQRAAVCEDTSASLLILAGAGSGKTLTMASRIAYIILSGVAPEKILGL 83 Query: 69 THTKAAAAEMSHRVLEII 86 ++ AA + RV ++ Sbjct: 84 CFSRQAAEALRERVATVL 101 >gi|32033668|ref|ZP_00133979.1| COG0210: Superfamily I DNA and RNA helicases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207767|ref|YP_001052992.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae L20] gi|126096559|gb|ABN73387.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 672 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T + V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMRERV 67 >gi|224437627|ref|ZP_03658580.1| DNA helicase II [Helicobacter cinaedi CCUG 18818] gi|313144079|ref|ZP_07806272.1| DNA helicase II [Helicobacter cinaedi CCUG 18818] gi|313129110|gb|EFR46727.1| DNA helicase II [Helicobacter cinaedi CCUG 18818] Length = 698 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 A AGSGKT L R+ L+ PS L LT T AA EM R L +++ Sbjct: 32 AGAGSGKTKTLTTRLAYLINEVGIPPSATLTLTFTNKAAQEMRDRALSLLS 82 >gi|182680607|ref|YP_001828767.1| DNA-dependent helicase II [Xylella fastidiosa M23] gi|182630717|gb|ACB91493.1| DNA helicase II [Xylella fastidiosa M23] Length = 723 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 3/70 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72 +D ++Q + E + A+ P + A AGSGKT +L R++ L N P+ +++ +T T Sbjct: 2 LDHLNQNQREAVAAA-PGHYL-ILAGAGSGKTRVLTHRIVWLNEVNGVPTHSMMAVTFTN 59 Query: 73 AAAAEMSHRV 82 AA E+ R+ Sbjct: 60 KAAGEIQQRI 69 >gi|146308253|ref|YP_001188718.1| UvrD/REP helicase [Pseudomonas mendocina ymp] gi|145576454|gb|ABP85986.1| UvrD/REP helicase [Pseudomonas mendocina ymp] Length = 628 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 34 AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A + A AGSGK+ LV RV+ LL P L ++ T A+ AE+ R+ ++ W + Sbjct: 116 ARIFAGAGSGKSSTLVLRVVFLLCHQEVDPKRLTVISFTNASCAELRERLQRLLGFWHYP 175 Query: 93 SD 94 D Sbjct: 176 HD 177 >gi|114798822|ref|YP_761616.1| putative DNA helicase II [Hyphomonas neptunium ATCC 15444] gi|114738996|gb|ABI77121.1| putative DNA helicase II [Hyphomonas neptunium ATCC 15444] Length = 781 Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 V A AG+GKT +L R+ ++ A+PS L +T T AA EM R Sbjct: 52 VLAGAGTGKTRVLTSRLAHIVATRLAYPSQTLTVTFTNKAAREMRER 98 >gi|33603572|ref|NP_891132.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50] gi|33577697|emb|CAE34962.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50] Length = 689 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 38/137 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT ++ Q++ LL + ++ LT T AA EM+ RV ++ D Sbjct: 29 VLAGAGSGKTRVITQKMAYLLRECGYMGRNIVALTFTNKAAREMAERVKTLV-------D 81 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 L+ GL + T HA ++++ A + Sbjct: 82 PKLAK------------------------------GLTISTFHALGVRLLREEAAHAGLK 111 Query: 155 SHFAIADEEQSKKLIEE 171 F+I D + + +I+E Sbjct: 112 PQFSILDADDAMSIIQE 128 >gi|325002209|ref|ZP_08123321.1| ATP-dependent DNA helicase [Pseudonocardia sp. P1] Length = 815 Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 E + + L T + + + P A V A AG+GKT + RV+ L+ P +L Sbjct: 7 ELATALGLHPPTAEQAAVIAAPAGPALVVAGAGAGKTETMAARVVWLVATGRVLPEQVLG 66 Query: 68 LTHTKAAAAEMSHRV 82 LT T+ AA ++ RV Sbjct: 67 LTFTRKAAQQLGTRV 81 >gi|307254049|ref|ZP_07535896.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258505|ref|ZP_07540242.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306862974|gb|EFM94921.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867409|gb|EFM99260.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 672 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T + V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMRERV 67 >gi|288560440|ref|YP_003423926.1| ATP-dependent DNA helicase UvrD/REP family [Methanobrevibacter ruminantium M1] gi|288543150|gb|ADC47034.1| ATP-dependent DNA helicase UvrD/REP family [Methanobrevibacter ruminantium M1] Length = 1565 Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 38/112 (33%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A G+GKT +L++R+ L+ PS+LL +T T+ AA E+ R+ + + + Sbjct: 23 IEAGPGAGKTRVLIERIKFLINEEKVEPSSLLVITFTRKAAEELKERL------YKDIDE 76 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 ++S +++ TIHAFC I+ + Sbjct: 77 SVVSM-------------------------------MQISTIHAFCRVILSE 97 >gi|239931038|ref|ZP_04687991.1| putative DNA helicase [Streptomyces ghanaensis ATCC 14672] gi|291439410|ref|ZP_06578800.1| predicted protein [Streptomyces ghanaensis ATCC 14672] gi|291342305|gb|EFE69261.1| predicted protein [Streptomyces ghanaensis ATCC 14672] Length = 634 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 7/53 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP------STLLCLTHTKAAAAEMSHRV 82 V+A AG+GKTH LV+R L L + P + +L LT ++AAA E+ R+ Sbjct: 29 VTAGAGAGKTHTLVRR-LDALCGHEDPDEVLEAAEILVLTFSRAAARELRERI 80 >gi|226224362|ref|YP_002758469.1| ATP-dependent DNA helicase [Listeria monocytogenes Clip81459] gi|225876824|emb|CAS05533.1| ATP-dependent DNA helicase [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 731 Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +L+ EQ A + T + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 5 ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 64 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 65 KAAREMKSRI 74 >gi|46907989|ref|YP_014378.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 4b F2365] gi|46881259|gb|AAT04555.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes serotype 4b str. F2365] Length = 733 Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +L+ EQ A + T + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 7 ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 66 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 67 KAAREMKSRI 76 >gi|169767922|ref|XP_001818432.1| ATP-dependent DNA helicase [Aspergillus oryzae RIB40] gi|83766287|dbj|BAE56430.1| unnamed protein product [Aspergillus oryzae] Length = 998 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 S P+ V A GSGKT L RV LL + + P ++C T T A+ EM R+ +++ Sbjct: 17 SSPSPILQVLAPPGSGKTKTLTARVAYLLAHHGYRPQDVICCTFTIKASREMRERLAKLV 76 >gi|260583198|ref|ZP_05850977.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae NT127] gi|260093755|gb|EEW77664.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae NT127] Length = 677 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 21 TGPCLVLAGAGSGKTRVIINKIAHLIGKCGYSPKQIAAVTFTNKAAREMKERV 73 >gi|76798891|ref|ZP_00781098.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 18RS21] gi|76585760|gb|EAO62311.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 18RS21] Length = 644 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVL 83 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAI 73 >gi|326792061|ref|YP_004309882.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427] gi|326542825|gb|ADZ84684.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427] Length = 781 Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 38/141 (26%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ L+ P ++L +T T AA EM R+ ++ Sbjct: 24 ILAGAGSGKTRVLTHRIAHLVENKGVKPWSILAITFTNKAAKEMKERIGNLVAE------ 77 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + + V T H+ C I++++ + Sbjct: 78 -------------------------------DAVNEMWVSTFHSMCVRILRRYGERLGYS 106 Query: 155 SHFAIADEEQSKKLIEEAKKS 175 F I D K LI++ K+ Sbjct: 107 RFFTIYDTSDQKTLIKDTLKA 127 >gi|190149550|ref|YP_001968075.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307245094|ref|ZP_07527187.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307262870|ref|ZP_07544494.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914681|gb|ACE60933.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306853983|gb|EFM86195.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306871775|gb|EFN03495.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 672 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T + V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMRERV 67 >gi|319944948|ref|ZP_08019210.1| ATP-dependent helicase PcrA [Lautropia mirabilis ATCC 51599] gi|319741518|gb|EFV93943.1| ATP-dependent helicase PcrA [Lautropia mirabilis ATCC 51599] Length = 677 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 27/46 (58%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 V A AGSGKT ++ ++L L+ A + +T T AAAEM+ R Sbjct: 21 VIAGAGSGKTRVITAKLLHLIDAGFTGRAIAAITFTNKAAAEMAER 66 >gi|311107257|ref|YP_003980110.1| DNA helicase II [Achromobacter xylosoxidans A8] gi|310761946|gb|ADP17395.1| DNA helicase II [Achromobacter xylosoxidans A8] Length = 764 Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A V A AGSGKT +L R+ L+ A P LL +T T AA EM R+ I+ Sbjct: 19 QHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFGLLAVTFTNKAAREMLARMSAIL 74 >gi|257468110|ref|ZP_05632206.1| ATP-dependent DNA helicase pcrA [Fusobacterium ulcerans ATCC 49185] gi|317062395|ref|ZP_07926880.1| ATP-dependent DNA helicase pcrA [Fusobacterium ulcerans ATCC 49185] gi|313688071|gb|EFS24906.1| ATP-dependent DNA helicase pcrA [Fusobacterium ulcerans ATCC 49185] Length = 725 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT + R+ ++ P +L +T T AA EM RV ++I Sbjct: 26 AGAGSGKTRTITYRIAHMIQELGISPYKILAVTFTNKAAKEMKERVEDLI 75 >gi|108756911|ref|YP_630227.1| ATP-dependent DNA helicase UvrD [Myxococcus xanthus DK 1622] gi|108460791|gb|ABF85976.1| ATP-dependent DNA helicase, UvrD/REP family [Myxococcus xanthus DK 1622] Length = 691 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 15/69 (21%) Query: 30 PTRSAWVS--------ANAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHTKAAAA 76 P R A V+ A AGSGKT ++ R++ LL N P +L +T T AA Sbjct: 9 PQREAVVTLEGPLLVLAGAGSGKTRVITHRIVHLL--NERPGLIMARNILAVTFTNKAAT 66 Query: 77 EMSHRVLEI 85 EM R++ + Sbjct: 67 EMKERLVHM 75 >gi|322711061|gb|EFZ02635.1| putative ATP-dependent DNA helicase [Metarhizium anisopliae ARSEF 23] Length = 992 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%) Query: 10 HSETI-DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67 H ETI + +++ + + ++ PT + + A GSGKTH L RV+ L+ P+ ++ Sbjct: 5 HPETILNSLNEAQRRAVTSNSPTVA--ILAGPGSGKTHTLTSRVVWLVQHVGYQPADVIV 62 Query: 68 LTHTKAAAAEMSHRV 82 T T AA EM R+ Sbjct: 63 ATFTVKAAREMKGRI 77 >gi|290893415|ref|ZP_06556400.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J2-071] gi|290557066|gb|EFD90595.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J2-071] gi|307571339|emb|CAR84518.1| ATP-dependent DNA helicase [Listeria monocytogenes L99] Length = 733 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +L+ EQ A + T + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 7 ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 66 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 67 KAAREMKSRI 76 >gi|254853669|ref|ZP_05243017.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL R2-503] gi|300765955|ref|ZP_07075927.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N1-017] gi|258607048|gb|EEW19656.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL R2-503] gi|300513341|gb|EFK40416.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N1-017] Length = 733 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +L+ EQ A + T + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 7 ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 66 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 67 KAAREMKSRI 76 >gi|254829488|ref|ZP_05234175.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N3-165] gi|284802203|ref|YP_003414068.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5578] gi|284995345|ref|YP_003417113.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5923] gi|258601903|gb|EEW15228.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N3-165] gi|284057765|gb|ADB68706.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5578] gi|284060812|gb|ADB71751.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5923] Length = 733 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +L+ EQ A + T + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 7 ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 66 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 67 KAAREMKSRI 76 >gi|253998774|ref|YP_003050837.1| UvrD/REP helicase [Methylovorus sp. SIP3-4] gi|253985453|gb|ACT50310.1| UvrD/REP helicase [Methylovorus sp. SIP3-4] Length = 665 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 V A AGSGKT ++ Q++ L+ P + +T T AA EM RV ++ S Sbjct: 22 VLAGAGSGKTRVITQKIAYLIEQCGYQPREIAAITFTNKAAREMQERVGHLLEGKS 77 >gi|224499522|ref|ZP_03667871.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes Finland 1988] gi|224503315|ref|ZP_03671622.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL R2-561] Length = 733 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +L+ EQ A + T + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 7 ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 66 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 67 KAAREMKSRI 76 >gi|145629666|ref|ZP_01785463.1| ATP-dependent DNA helicase [Haemophilus influenzae 22.1-21] gi|144978177|gb|EDJ87950.1| ATP-dependent DNA helicase [Haemophilus influenzae 22.1-21] Length = 671 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIGKCGYSPKQIAAVTFTNKAAREMKERV 67 >gi|119964140|ref|YP_948452.1| UvrD/REP helicase [Arthrobacter aurescens TC1] gi|119950999|gb|ABM09910.1| UvrD/REP helicase [Arthrobacter aurescens TC1] Length = 1167 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77 T + + + P V A AGSGKT + RV+ L+AN P +L +T T+ AA E Sbjct: 40 TPEQAAIIASPLSPRLVIAGAGSGKTATMADRVV-WLVANGWVRPEEVLGVTFTRKAAGE 98 Query: 78 MSHRV 82 ++ R+ Sbjct: 99 LASRI 103 >gi|88606993|ref|YP_505476.1| UvrD/Rep family helicase [Anaplasma phagocytophilum HZ] gi|88598056|gb|ABD43526.1| helicase, UvrD/Rep family [Anaplasma phagocytophilum HZ] Length = 659 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 ++L ++ K L + P + A AG+GKT + R+ ++ A P +L +T T Sbjct: 26 LNLNAEQKEAVLQVAGPV---LILAGAGTGKTRTITARMGHIIKEGYAQPHEILAVTFTN 82 Query: 73 AAAAEMSHRVLEIITA 88 AA EM RV I+TA Sbjct: 83 KAAKEMLSRVNNIVTA 98 >gi|16803799|ref|NP_465284.1| ATP-dependent DNA helicase [Listeria monocytogenes EGD-e] gi|16411213|emb|CAC99837.1| ATP-dependent DNA helicase [Listeria monocytogenes EGD-e] Length = 731 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +L+ EQ A + T + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 5 ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 64 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 65 KAAREMKSRI 74 >gi|47095685|ref|ZP_00233292.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 1/2a F6854] gi|254900736|ref|ZP_05260660.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes J0161] gi|254913779|ref|ZP_05263791.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes J2818] gi|254938166|ref|ZP_05269863.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes F6900] gi|47015970|gb|EAL06896.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 1/2a F6854] gi|258610779|gb|EEW23387.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes F6900] gi|293591795|gb|EFG00130.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes J2818] Length = 733 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +L+ EQ A + T + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 7 ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 66 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 67 KAAREMKSRI 76 >gi|320451177|ref|YP_004203273.1| ATP-dependent DNA helicase [Thermus scotoductus SA-01] gi|320151346|gb|ADW22724.1| ATP-dependent DNA helicase [Thermus scotoductus SA-01] Length = 872 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 6/75 (8%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL-EII----TAWSHL 92 A+AG+GKTH LV +L LL + +T T+ AA E+ R+ E+I +W+ Sbjct: 6 ASAGTGKTHALVGELLALLRQGVPLRRMAAVTFTRKAAEELRRRIQGEVIRLSSASWAEE 65 Query: 93 SD-EILSAEITKIQG 106 + E+ A T I G Sbjct: 66 AQREVYGAVFTTIHG 80 >gi|254832504|ref|ZP_05237159.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes 10403S] Length = 733 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +L+ EQ A + T + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 7 ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 66 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 67 KAAREMKSRI 76 >gi|217964093|ref|YP_002349771.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HCC23] gi|217333363|gb|ACK39157.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HCC23] Length = 731 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +L+ EQ A + T + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 5 ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 64 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 65 KAAREMKSRI 74 >gi|47092912|ref|ZP_00230694.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 4b H7858] gi|254825996|ref|ZP_05230997.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J1-194] gi|254932795|ref|ZP_05266154.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HPB2262] gi|255521959|ref|ZP_05389196.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J1-175] gi|47018738|gb|EAL09489.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 4b H7858] gi|293584348|gb|EFF96380.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HPB2262] gi|293595235|gb|EFG02996.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J1-194] gi|328466511|gb|EGF37654.1| ATP-dependent DNA helicase [Listeria monocytogenes 1816] Length = 733 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +L+ EQ A + T + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 7 ELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTN 66 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 67 KAAREMKSRI 76 >gi|317407330|gb|EFV87300.1| DNA helicase II [Achromobacter xylosoxidans C54] Length = 762 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A V A AGSGKT +L R+ L+ A P LL +T T AA EM R+ I+ Sbjct: 18 QHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFGLLAVTFTNKAAREMLARMSAIL 73 >gi|308049020|ref|YP_003912586.1| exodeoxyribonuclease V, beta subunit [Ferrimonas balearica DSM 9799] gi|307631210|gb|ADN75512.1| exodeoxyribonuclease V, beta subunit [Ferrimonas balearica DSM 9799] Length = 1218 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 9/61 (14%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLL------ANAHPST---LLCLTHTKAAAAEMSHR 81 T + + A+AG+GKT+ + LRL+L A+ HP T +L +T TKAA E+ R Sbjct: 13 TGTRLIEASAGTGKTYTIAALYLRLVLGHGGSAAHPHPLTPEQILVVTFTKAATEELKDR 72 Query: 82 V 82 + Sbjct: 73 I 73 >gi|55821019|ref|YP_139461.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311] gi|55737004|gb|AAV60646.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311] Length = 775 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + + A S Sbjct: 31 IMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAITFTNKAAREMRERAVALNPATS 86 >gi|326693832|ref|ZP_08230837.1| ATP-dependent DNA helicase PcrA [Leuconostoc argentinum KCTC 3773] Length = 748 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 +LI+ +Q A T+ + A AGSGKT +L R+ L+ N P +L +T T Sbjct: 5 ELINGMNDKQAEAVQTTQGPLLIMAGAGSGKTRVLTHRIAHLVKDLNVMPWRILAITFTN 64 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 65 KAAKEMRERI 74 >gi|313200859|ref|YP_004039517.1| uvrd/rep helicase [Methylovorus sp. MP688] gi|312440175|gb|ADQ84281.1| UvrD/REP helicase [Methylovorus sp. MP688] Length = 665 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 V A AGSGKT ++ Q++ L+ P + +T T AA EM RV ++ S Sbjct: 22 VLAGAGSGKTRVITQKIAYLIEQCGYQPREIAAITFTNKAAREMQERVGHLLEGKS 77 >gi|293606186|ref|ZP_06688550.1| excision endonuclease subunit UvrD [Achromobacter piechaudii ATCC 43553] gi|292815446|gb|EFF74563.1| excision endonuclease subunit UvrD [Achromobacter piechaudii ATCC 43553] Length = 764 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A V A AGSGKT +L R+ L+ A P LL +T T AA EM R+ I+ Sbjct: 19 QHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFGLLAVTFTNKAAREMLARMSAIL 74 >gi|288573981|ref|ZP_06392338.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569722|gb|EFC91279.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 1160 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 21/131 (16%) Query: 36 VSANAGSGKTHILVQR-VLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA AG+GKT L R V + A +L LT T AA EM+ R+ + Sbjct: 35 VSAGAGTGKTWTLAWRFVWAVATGRARAGEILTLTFTDKAATEMAERIRLL--------- 85 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ--FPLEAN 152 ++G P ++ L LE+ + TIH+F ++++ L+ + Sbjct: 86 ---------MEGLLPKTKELPTVAAALREGLESLEDSYISTIHSFSSRVIRESGLSLDLD 136 Query: 153 ITSHFAIADEE 163 S A EE Sbjct: 137 PASRVVSAPEE 147 >gi|225849851|ref|YP_002730085.1| putative UvrD/REP helicase [Persephonella marina EX-H1] gi|225645334|gb|ACO03520.1| putative UvrD/REP helicase [Persephonella marina EX-H1] Length = 1021 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 25/152 (16%) Query: 38 ANAGSGKTHILVQRVL--RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 A+AG+GKT+ LV++++ ++ + + T T+ AA+E+ R+ ++ + ++ Sbjct: 8 ASAGTGKTYTLVEKIVDEYIIRKRINIDQVFVSTFTEKAASELKSRI------YARIKEK 61 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 I + K P++ LL + + TIH+ I++ P ++ IT Sbjct: 62 IYENQ------KNPDQL------KLLFSNFRNVQHSYIGTIHSLLLRILKANPDKSGITE 109 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + D+ Q + L E+ I L+ N E Sbjct: 110 DIKVIDDLQQEALFFES-----FEIFLEKNRE 136 >gi|218289816|ref|ZP_03494016.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1] gi|218240107|gb|EED07292.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1] Length = 705 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 5/87 (5%) Query: 12 ETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69 + D++ EQ A T V A AGSGKT +L +R+ L+ A +L +T Sbjct: 3 DVTDILRGLNPEQRDAVTTTSGPLLVVAGAGSGKTSVLTRRIAYLIAHAGVAVHEILAIT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEI 96 T AA EM R+ ++I H +D++ Sbjct: 63 FTNKAAREMKTRIRDLI---GHRADDL 86 >gi|218281364|ref|ZP_03487842.1| hypothetical protein EUBIFOR_00407 [Eubacterium biforme DSM 3989] gi|218217456|gb|EEC90994.1| hypothetical protein EUBIFOR_00407 [Eubacterium biforme DSM 3989] Length = 725 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L+ R++ L+ P+ +L +T T AA EM R+ Sbjct: 28 AGAGSGKTRVLMARIVYLVQDCGILPNRILAITFTNKAANEMKTRL 73 >gi|76787976|ref|YP_329845.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae A909] gi|77407064|ref|ZP_00784070.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae H36B] gi|77413012|ref|ZP_00789214.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 515] gi|76563033|gb|ABA45617.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae A909] gi|77160910|gb|EAO72019.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 515] gi|77174333|gb|EAO77196.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae H36B] Length = 759 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPA 78 >gi|307718485|ref|YP_003874017.1| hypothetical protein STHERM_c07940 [Spirochaeta thermophila DSM 6192] gi|306532210|gb|ADN01744.1| hypothetical protein STHERM_c07940 [Spirochaeta thermophila DSM 6192] Length = 665 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT ++ R+ +L ++ +L LT T AA EM RV Sbjct: 28 AGAGSGKTRVITYRIAYMLDSHIPQKAILALTFTNKAAREMWERV 72 >gi|190576381|ref|YP_001974226.1| DNA-dependent helicase II [Stenotrophomonas maltophilia K279a] gi|190014303|emb|CAQ47950.1| putative DNA helicase II [Stenotrophomonas maltophilia K279a] Length = 730 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69 S +D ++ + E + S P V A AGSGKT +L R+ L P+ + +T Sbjct: 4 SHLLDGLNPAQREAV--SAPPGHHLVLAGAGSGKTRVLTHRIAWLHEVEGVPTHGIFAVT 61 Query: 70 HTKAAAAEMSHRV 82 T AA EM HR+ Sbjct: 62 FTNKAAGEMRHRI 74 >gi|183981382|ref|YP_001849673.1| ATP-dependent DNA helicase [Mycobacterium marinum M] gi|183174708|gb|ACC39818.1| ATP-dependent DNA helicase [Mycobacterium marinum M] Length = 1101 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLL 66 E + + + T + + + P V A AG+GKT + RV+ L+AN A P +L Sbjct: 9 EIASALGIFPPTDEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPGQVL 67 Query: 67 CLTHTKAAAAEMSHRV 82 LT T+ AA ++ RV Sbjct: 68 GLTFTRKAAGQLLRRV 83 >gi|118618002|ref|YP_906334.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99] gi|118570112|gb|ABL04863.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99] Length = 1101 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 3/76 (3%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLL 66 E + + + T + + + P V A AG+GKT + RV+ L+AN A P +L Sbjct: 9 EIASALGIFPPTDEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPGQVL 67 Query: 67 CLTHTKAAAAEMSHRV 82 LT T+ AA ++ RV Sbjct: 68 GLTFTRKAAGQLLRRV 83 >gi|78356631|ref|YP_388080.1| ATP-dependent DNA helicase UvrD [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219036|gb|ABB38385.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 1067 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 34/177 (19%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------------LLCLTHTKAAAAEMS 79 + A+AGSGKT+ L L L A + S+ +L +T T AA EM Sbjct: 5 IKASAGSGKTYRLTGEFLDRLRAASEESSAACALAPAGAAYCWPEILAVTFTNKAATEMQ 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R++ L + L + P S AR + T+L L V+TI + Sbjct: 65 ERIIRT------LKERALGMGASGPAADWP----ASGARRWVNTMLRRYSSLNVRTIDSL 114 Query: 140 CEAIMQQFPLEANITSHF-AIADEEQ-----SKKLIEEAKKST--LASIMLDNNEEL 188 +++ LE + F + DEE+ ++++E+A+ + L ++D +E L Sbjct: 115 LHMLVRLCALELGLPPDFEPVFDEEEIFTPLYERMLEQARSGSHQLRQQLVDASESL 171 >gi|312883349|ref|ZP_07743075.1| DNA helicase IV [Vibrio caribbenthicus ATCC BAA-2122] gi|309368965|gb|EFP96491.1| DNA helicase IV [Vibrio caribbenthicus ATCC BAA-2122] Length = 685 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L+ RV LL ++ A LL L + AA EM R+ + I Sbjct: 217 VLAGAGSGKTSVLIARVAYLLQSHLAQSEELLMLAFGRDAAQEMKQRLSDKI 268 >gi|307292736|ref|ZP_07572582.1| UvrD/REP helicase [Sphingobium chlorophenolicum L-1] gi|306880802|gb|EFN12018.1| UvrD/REP helicase [Sphingobium chlorophenolicum L-1] Length = 770 Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT L R+ L+ A PS +L +T T AA EM RV +I Sbjct: 46 VLAGAGTGKTAALTARLAHLIATRRAWPSEILAVTFTNKAAREMRERVGRMI 97 >gi|258654033|ref|YP_003203189.1| exodeoxyribonuclease V subunit beta [Nakamurella multipartita DSM 44233] gi|258557258|gb|ACV80200.1| exodeoxyribonuclease V, beta subunit [Nakamurella multipartita DSM 44233] Length = 1139 Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 P + + A+AG+GKTH + V R + A P LL +T +AA+ E+ RV Sbjct: 19 PRGTTLLEASAGTGKTHAIGDLVTRYIAEGVARPDQLLVITFGRAASQELRERV 72 >gi|152996458|ref|YP_001341293.1| UvrD/REP helicase [Marinomonas sp. MWYL1] gi|150837382|gb|ABR71358.1| UvrD/REP helicase [Marinomonas sp. MWYL1] Length = 759 Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 32/64 (50%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 D T A V A AG+GKT L+ R+ LL+ PS + K+A E S R+ + + + Sbjct: 16 DLTSPAKVIAVAGAGKTTTLISRIEHLLVQGVDPSHIGVFMFNKSAQEEFSERLSKRLMS 75 Query: 89 WSHL 92 H Sbjct: 76 AGHF 79 >gi|33592827|ref|NP_880471.1| DNA helicase II [Bordetella pertussis Tohama I] gi|33601161|ref|NP_888721.1| DNA helicase II [Bordetella bronchiseptica RB50] gi|33572475|emb|CAE42046.1| DNA helicase II [Bordetella pertussis Tohama I] gi|33575596|emb|CAE32674.1| DNA helicase II [Bordetella bronchiseptica RB50] Length = 766 Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 + A V A AGSGKT +L R+ L+ A P LL +T T AA EM R+ Sbjct: 19 QHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFALLAVTFTNKAAREMLTRM 70 >gi|33596606|ref|NP_884249.1| DNA helicase II [Bordetella parapertussis 12822] gi|33573307|emb|CAE37290.1| DNA helicase II [Bordetella parapertussis] Length = 766 Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 + A V A AGSGKT +L R+ L+ A P LL +T T AA EM R+ Sbjct: 19 QHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFALLAVTFTNKAAREMLTRM 70 >gi|86145658|ref|ZP_01063988.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio sp. MED222] gi|85836629|gb|EAQ54755.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio sp. MED222] Length = 1224 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 31/141 (21%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA---------------HPST---LLCLTHTKAAAAE 77 + A+AG+GKT + LRLLL + P T +L +T T+AA AE Sbjct: 28 IEASAGTGKTFTIAGLYLRLLLGHGTAAPQGDLTEATRHHEPLTVDQILVVTFTEAATAE 87 Query: 78 MSHRV------LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + R+ I A D +++ + I D + A L+ Sbjct: 88 LRDRIRARIHDARIAFARGQSDDPVIAPLLQAI-------DDHAGAAKTLLNAERQMDEA 140 Query: 132 KVQTIHAFCEAIMQQFPLEAN 152 V TIH FC+ ++ Q E+ Sbjct: 141 AVYTIHGFCQRMLTQNAFESG 161 >gi|319745133|gb|EFV97457.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae ATCC 13813] Length = 766 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + + A Sbjct: 32 IMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPA 85 >gi|270158153|ref|ZP_06186810.1| ATP-dependent DNA helicase Rep [Legionella longbeachae D-4968] gi|289163586|ref|YP_003453724.1| ATP-dependent DNA helicase Rep [Legionella longbeachae NSW150] gi|269990178|gb|EEZ96432.1| ATP-dependent DNA helicase Rep [Legionella longbeachae D-4968] gi|288856759|emb|CBJ10570.1| ATP-dependent DNA helicase Rep [Legionella longbeachae NSW150] Length = 667 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLC-LTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ L+ + + +C +T T AA EM RV ++ Sbjct: 19 VLAGAGSGKTRVITQKIAYLINTCGYAANTVCAVTFTNKAANEMRARVAAVL 70 >gi|237666682|ref|ZP_04526667.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum E4 str. BoNT E BL5262] gi|237657881|gb|EEP55436.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum E4 str. BoNT E BL5262] Length = 757 Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ ++ N P +L +T T AA EM RV +I Sbjct: 25 ILAGAGSGKTRVLTHRIAHMVEDLNIAPYNILAITFTNKAAKEMKDRVRALI 76 >gi|217970262|ref|YP_002355496.1| exodeoxyribonuclease V subunit beta [Thauera sp. MZ1T] gi|217507589|gb|ACK54600.1| exodeoxyribonuclease V, beta subunit [Thauera sp. MZ1T] Length = 1321 Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 16/138 (11%) Query: 30 PTR-SAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEM 78 P R S + A+AG+GKT + LRL+L + P+ +L +T T+AA E+ Sbjct: 11 PLRGSRLIEASAGTGKTWTIAALYLRLVLGHGDADTAFARPLLPAEILVMTFTRAATREL 70 Query: 79 SHRVLEII---TAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 S R+ E + AW D + + + +++ P+ + A L V Sbjct: 71 SERIRERLREAAAWFRNEDAGRAPDPLLDELRAAYPDAAARRNAAWRLAMAAAAMDDAAV 130 Query: 134 QTIHAFCEAIMQQFPLEA 151 TI A+C+ ++++ ++ Sbjct: 131 FTIDAWCQRMLREHAFDS 148 >gi|148239844|ref|YP_001225231.1| exodeoxyribonuclease V beta chain [Synechococcus sp. WH 7803] gi|147848383|emb|CAK23934.1| Exodeoxyribonuclease V beta chain [Synechococcus sp. WH 7803] Length = 1229 Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 22/152 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV------------ 82 + A+AG+GKT L V+RL++ LL +T T+AAA E+ R+ Sbjct: 26 LEASAGTGKTFALAHLVMRLVVERELKLDALLVVTFTEAAADELRDRIGKRLDGALQGLL 85 Query: 83 -LEIITAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAF 139 LE ++ + + E G+ P KS S L + + TIH F Sbjct: 86 CLEQGGDGEAMATDAVLQEWLAEHGRDPTGRKSKASLLLEALEALERA----DITTIHGF 141 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 C +++ L++ + ++ D+ Q+ L+EE Sbjct: 142 CRRTLRRQALDSGRSMDLSVDDDPQT--LVEE 171 >gi|99081864|ref|YP_614018.1| ATP-dependent DNA helicase Rep [Ruegeria sp. TM1040] gi|99038144|gb|ABF64756.1| ATP-dependent DNA helicase, Rep family [Ruegeria sp. TM1040] Length = 814 Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ LL N A + +L +T T AA EM RV Sbjct: 50 AGAGTGKTKALTTRIVHLLNTNKARTNEILAVTFTNKAAREMKDRV 95 >gi|315187021|gb|EFU20778.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578] Length = 665 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 26/45 (57%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT ++ R+ +L ++ +L LT T AA EM RV Sbjct: 28 AGAGSGKTRVITYRIAYMLDSHIPQKAILALTFTNKAAREMWERV 72 >gi|319897816|ref|YP_004136013.1| DNA helicase and single-stranded DNA-dependent atpase [Haemophilus influenzae F3031] gi|317433322|emb|CBY81698.1| DNA helicase and single-stranded DNA-dependent ATPase [Haemophilus influenzae F3031] Length = 671 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67 >gi|305679858|ref|ZP_07402668.1| HRDC domain protein [Corynebacterium matruchotii ATCC 14266] gi|305660478|gb|EFM49975.1| HRDC domain protein [Corynebacterium matruchotii ATCC 14266] Length = 693 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 I+L +Q A+ P + A AG+GKT + R+ L+ + ++ +T TK Sbjct: 2 INLGDLDADQQQAATAPRGPVAILAGAGTGKTRTITYRIAHLIDQGFVGGNRVMAVTFTK 61 Query: 73 AAAAEMSHRV 82 AA EM+HR+ Sbjct: 62 RAAGEMAHRL 71 >gi|217978725|ref|YP_002362872.1| tRNA modification GTPase TrmE [Methylocella silvestris BL2] gi|217504101|gb|ACK51510.1| tRNA modification GTPase TrmE [Methylocella silvestris BL2] Length = 448 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 7/77 (9%) Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN------EELKKAFYEILE 197 + QF EA H + E+ +K I EA+ S LA I+ D+ E+L+ A + + Sbjct: 368 LAQFAAEAGGAGHDGVITRERHRKSIAEAE-SALARILSDSAPVEIVAEDLRAALFALER 426 Query: 198 ISNDEDIETLISDIISN 214 + D+E ++ DI S Sbjct: 427 LVGRVDVEDILGDIFSR 443 >gi|22537300|ref|NP_688151.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 2603V/R] gi|22534170|gb|AAN00024.1|AE014244_1 ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 2603V/R] Length = 759 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPA 78 >gi|260581374|ref|ZP_05849189.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae RdAW] gi|260091969|gb|EEW75917.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae RdAW] Length = 676 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 21 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 73 >gi|218892722|ref|YP_002441591.1| putative helicase [Pseudomonas aeruginosa LESB58] gi|218772950|emb|CAW28762.1| probable helicase [Pseudomonas aeruginosa LESB58] Length = 530 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 34 AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A + A AGSGK+ LV RV+ +L P L ++ T A+ A++ ++L ++ W + Sbjct: 9 ARIFAGAGSGKSTTLVLRVVFMLCHLGVEPQRLTVISFTNASCAQLREQLLRVLAHWQYP 68 Query: 93 SD 94 D Sbjct: 69 FD 70 >gi|218708696|ref|YP_002416317.1| exodeoxyribonuclease V subunit beta [Vibrio splendidus LGP32] gi|218321715|emb|CAV17669.1| Exodeoxyribonuclease V beta chain [Vibrio splendidus LGP32] Length = 1224 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 31/141 (21%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA---------------HPST---LLCLTHTKAAAAE 77 + A+AG+GKT + LRLLL + P T +L +T T+AA AE Sbjct: 28 IEASAGTGKTFTIAGLYLRLLLGHGTAAPQGDLTEATRHHEPLTVDQILVVTFTEAATAE 87 Query: 78 MSHRV------LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + R+ I A D +++ + I D + A L+ Sbjct: 88 LRDRIRARIHDARIAFARGQSDDPVIAPLLQAI-------DDHAGAAKTLLNAERQMDEA 140 Query: 132 KVQTIHAFCEAIMQQFPLEAN 152 V TIH FC+ ++ Q E+ Sbjct: 141 AVYTIHGFCQRMLTQNAFESG 161 >gi|188574507|ref|YP_001911436.1| ATP-dependent DNA helicase Rep [Xanthomonas oryzae pv. oryzae PXO99A] gi|188518959|gb|ACD56904.1| ATP-dependent DNA helicase Rep [Xanthomonas oryzae pv. oryzae PXO99A] Length = 640 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++V+++ L+ +P+ + +T T +A EM RV + I Sbjct: 3 VLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMGERVAKRIRG 56 >gi|329122565|ref|ZP_08251146.1| ATP-dependent DNA helicase Rep [Haemophilus aegyptius ATCC 11116] gi|327473116|gb|EGF18542.1| ATP-dependent DNA helicase Rep [Haemophilus aegyptius ATCC 11116] Length = 670 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67 >gi|229845640|ref|ZP_04465765.1| ATP-dependent DNA helicase [Haemophilus influenzae 6P18H1] gi|229811440|gb|EEP47144.1| ATP-dependent DNA helicase [Haemophilus influenzae 6P18H1] Length = 670 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67 >gi|227111642|ref|ZP_03825298.1| DNA helicase IV [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 685 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R L+ A P +L L + AA EM+ R+ E Sbjct: 214 VLAGAGSGKTSVLVARAAWLMHRQEATPDQILLLAFGRKAAEEMNDRIRE 263 >gi|212715429|ref|ZP_03323557.1| hypothetical protein BIFCAT_00324 [Bifidobacterium catenulatum DSM 16992] gi|212661604|gb|EEB22179.1| hypothetical protein BIFCAT_00324 [Bifidobacterium catenulatum DSM 16992] Length = 584 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVL 83 V A AG+GKT ++ + LL A P +L L+ TKA+A +MS R++ Sbjct: 43 VLAGAGTGKTTTIIGYIAWLLATKRAAPEEILVLSFTKASAGDMSQRIM 91 >gi|167772731|ref|ZP_02444784.1| hypothetical protein ANACOL_04113 [Anaerotruncus colihominis DSM 17241] gi|167665209|gb|EDS09339.1| hypothetical protein ANACOL_04113 [Anaerotruncus colihominis DSM 17241] Length = 899 Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 R V A G+GKT LV R+ RL+ A P + +T T AAAE++ R+ Sbjct: 475 RQITVVAGPGTGKTRTLVYRIRRLIETGAAAPGQITAVTFTNKAAAELAGRL 526 >gi|145633860|ref|ZP_01789582.1| ATP-dependent DNA helicase [Haemophilus influenzae 3655] gi|144985302|gb|EDJ92141.1| ATP-dependent DNA helicase [Haemophilus influenzae 3655] Length = 670 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67 >gi|295109226|emb|CBL23179.1| ATP-dependent DNA helicase PcrA [Ruminococcus obeum A2-162] Length = 744 Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI 85 + A AGSGKT +L R+ L+ +P +L +T T AA EM RV I Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIAEKGINPWNILAITFTNKAAHEMRERVDRI 74 >gi|258623933|ref|ZP_05718886.1| helicase IV [Vibrio mimicus VM603] gi|258583727|gb|EEW08523.1| helicase IV [Vibrio mimicus VM603] Length = 687 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L RV LL ++ A P +L + + AA EM+ R+ Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHLAKPEQILMVAFARDAAEEMAERL 264 >gi|148827827|ref|YP_001292580.1| ATP-dependent DNA helicase [Haemophilus influenzae PittGG] gi|148719069|gb|ABR00197.1| ATP-dependent DNA helicase [Haemophilus influenzae PittGG] Length = 670 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67 >gi|145639403|ref|ZP_01795008.1| ATP-dependent DNA helicase [Haemophilus influenzae PittII] gi|145271450|gb|EDK11362.1| ATP-dependent DNA helicase [Haemophilus influenzae PittII] Length = 671 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67 >gi|116049351|ref|YP_791846.1| putative helicase [Pseudomonas aeruginosa UCBPP-PA14] gi|115584572|gb|ABJ10587.1| putative helicase [Pseudomonas aeruginosa UCBPP-PA14] Length = 530 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 34 AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A + A AGSGK+ LV RV+ +L P L ++ T A+ A++ ++L ++ W + Sbjct: 9 ARIFAGAGSGKSTTLVLRVVFMLCHLGVEPQRLTVISFTNASCAQLREQLLRVLAHWQYP 68 Query: 93 SD 94 D Sbjct: 69 FD 70 >gi|29829618|ref|NP_824252.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680] gi|29606726|dbj|BAC70787.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680] Length = 1202 Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T AA Sbjct: 39 IPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAA 98 Query: 76 AEMSHRV 82 E++ RV Sbjct: 99 GELAERV 105 >gi|466973|gb|AAA17159.1| uvrD [Mycobacterium leprae] Length = 457 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEM 78 + E +LA P V A AG+GKT + R+ L+ A H +T +L +T T+ AAAEM Sbjct: 29 QREAVLA--PRGPVCVLAGAGTGKTRTITHRIAHLVGAG-HVATGQVLAVTFTQRAAAEM 85 Query: 79 SHRVLEIITAWSHLSD 94 R+ + A +SD Sbjct: 86 RSRLRALGAAVQAVSD 101 >gi|308371270|ref|ZP_07424390.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu003] gi|308372459|ref|ZP_07428757.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu004] gi|308376024|ref|ZP_07445856.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu007] gi|308378226|ref|ZP_07481952.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu009] gi|308329221|gb|EFP18072.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu003] gi|308333053|gb|EFP21904.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu004] gi|308344515|gb|EFP33366.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu007] gi|308353144|gb|EFP41995.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu009] Length = 1144 Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHT 71 + L T + + + P V A AG+GKT + RV+ L+AN A P +L LT T Sbjct: 62 LGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPGQVLGLTFT 120 Query: 72 KAAAAEMSHRV 82 + AA ++ RV Sbjct: 121 RKAAGQLLRRV 131 >gi|308232374|ref|ZP_07415860.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu001] gi|308379444|ref|ZP_07486303.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu010] gi|308380606|ref|ZP_07490521.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu011] gi|308214071|gb|EFO73470.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu001] gi|308356886|gb|EFP45737.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu010] gi|308360886|gb|EFP49737.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu011] Length = 1144 Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHT 71 + L T + + + P V A AG+GKT + RV+ L+AN A P +L LT T Sbjct: 62 LGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPGQVLGLTFT 120 Query: 72 KAAAAEMSHRV 82 + AA ++ RV Sbjct: 121 RKAAGQLLRRV 131 >gi|306782246|ref|ZP_07420583.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu002] gi|306794956|ref|ZP_07433258.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu005] gi|306799158|ref|ZP_07437460.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu006] gi|308325002|gb|EFP13853.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu002] gi|308336739|gb|EFP25590.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu005] gi|308340579|gb|EFP29430.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu006] Length = 1101 Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHT 71 + L T + + + P V A AG+GKT + RV+ L+AN A P +L LT T Sbjct: 19 LGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPGQVLGLTFT 77 Query: 72 KAAAAEMSHRV 82 + AA ++ RV Sbjct: 78 RKAAGQLLRRV 88 >gi|298526678|ref|ZP_07014087.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A] gi|298496472|gb|EFI31766.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A] Length = 921 Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHT 71 + L T + + + P V A AG+GKT + RV+ L+AN A P +L LT T Sbjct: 19 LGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPGQVLGLTFT 77 Query: 72 KAAAAEMSHRV 82 + AA ++ RV Sbjct: 78 RKAAGQLLRRV 88 >gi|294993862|ref|ZP_06799553.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 210] gi|326902572|gb|EGE49505.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis W-148] Length = 1101 Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHT 71 + L T + + + P V A AG+GKT + RV+ L+AN A P +L LT T Sbjct: 19 LGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPGQVLGLTFT 77 Query: 72 KAAAAEMSHRV 82 + AA ++ RV Sbjct: 78 RKAAGQLLRRV 88 >gi|294637927|ref|ZP_06716196.1| ATP-dependent DNA helicase Rep [Edwardsiella tarda ATCC 23685] gi|291088953|gb|EFE21514.1| ATP-dependent DNA helicase Rep [Edwardsiella tarda ATCC 23685] Length = 700 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 12/93 (12%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLE----- 84 T V A AGSGKT ++ ++ L+ +P+ + +T T AA EM RV + Sbjct: 42 TGPCLVLAGAGSGKTRVITNKIAHLIRVCGYPARQIAAVTFTNKAAREMKERVAQTLGRK 101 Query: 85 -----IITAWSHLSDEILSAEITKIQGKKPNKS 112 +I+ + L EI+ E K KPN S Sbjct: 102 EARGLMISTFHTLGLEIIKREY-KALAMKPNFS 133 >gi|260202354|ref|ZP_05769845.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46] gi|289444772|ref|ZP_06434516.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46] gi|289417691|gb|EFD14931.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46] Length = 1101 Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHT 71 + L T + + + P V A AG+GKT + RV+ L+AN A P +L LT T Sbjct: 19 LGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPGQVLGLTFT 77 Query: 72 KAAAAEMSHRV 82 + AA ++ RV Sbjct: 78 RKAAGQLLRRV 88 >gi|218754981|ref|ZP_03533777.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503] gi|289763384|ref|ZP_06522762.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503] gi|289710890|gb|EFD74906.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503] Length = 1101 Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHT 71 + L T + + + P V A AG+GKT + RV+ L+AN A P +L LT T Sbjct: 19 LGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPGQVLGLTFT 77 Query: 72 KAAAAEMSHRV 82 + AA ++ RV Sbjct: 78 RKAAGQLLRRV 88 >gi|15610337|ref|NP_217717.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis H37Rv] gi|15842787|ref|NP_337824.1| UvrD/Rep family helicase [Mycobacterium tuberculosis CDC1551] gi|31794378|ref|NP_856871.1| ATP-dependent DNA helicase [Mycobacterium bovis AF2122/97] gi|121639086|ref|YP_979310.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663060|ref|YP_001284583.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra] gi|148824397|ref|YP_001289151.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis F11] gi|215405207|ref|ZP_03417388.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 02_1987] gi|215432160|ref|ZP_03430079.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis EAS054] gi|224991578|ref|YP_002646267.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Tokyo 172] gi|253800237|ref|YP_003033238.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 1435] gi|254365824|ref|ZP_04981869.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis str. Haarlem] gi|254552298|ref|ZP_05142745.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188244|ref|ZP_05765718.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A] gi|260206546|ref|ZP_05774037.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85] gi|289448884|ref|ZP_06438628.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A] gi|289555474|ref|ZP_06444684.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 605] gi|289575916|ref|ZP_06456143.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85] gi|289747014|ref|ZP_06506392.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987] gi|289755320|ref|ZP_06514698.1| helicase [Mycobacterium tuberculosis EAS054] gi|297635848|ref|ZP_06953628.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 4207] gi|297732844|ref|ZP_06961962.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN R506] gi|307085954|ref|ZP_07495067.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu012] gi|313660177|ref|ZP_07817057.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN V2475] gi|2827611|emb|CAA16666.1| PROBABLE ATP-DEPENDENT DNA HELICASE [Mycobacterium tuberculosis H37Rv] gi|13883113|gb|AAK47638.1| helicase, UvrD/Rep family [Mycobacterium tuberculosis CDC1551] gi|31619974|emb|CAD95318.1| PROBABLE ATP-DEPENDENT DNA HELICASE [Mycobacterium bovis AF2122/97] gi|121494734|emb|CAL73215.1| Probable ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134151337|gb|EBA43382.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis str. Haarlem] gi|148507212|gb|ABQ75021.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra] gi|148722924|gb|ABR07549.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis F11] gi|224774693|dbj|BAH27499.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Tokyo 172] gi|253321740|gb|ACT26343.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 1435] gi|289421842|gb|EFD19043.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A] gi|289440106|gb|EFD22599.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 605] gi|289540347|gb|EFD44925.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85] gi|289687542|gb|EFD55030.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987] gi|289695907|gb|EFD63336.1| helicase [Mycobacterium tuberculosis EAS054] gi|308364573|gb|EFP53424.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu012] gi|323718065|gb|EGB27247.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CDC1551A] gi|328459972|gb|AEB05395.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 4207] Length = 1101 Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHT 71 + L T + + + P V A AG+GKT + RV+ L+AN A P +L LT T Sbjct: 19 LGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVV-WLVANGYAEPGQVLGLTFT 77 Query: 72 KAAAAEMSHRV 82 + AA ++ RV Sbjct: 78 RKAAGQLLRRV 88 >gi|25011258|ref|NP_735653.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae NEM316] gi|23095682|emb|CAD46868.1| Unknown [Streptococcus agalactiae NEM316] Length = 759 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPA 78 >gi|77412397|ref|ZP_00788706.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae CJB111] gi|77161557|gb|EAO72559.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae CJB111] Length = 759 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPA 78 >gi|145642218|ref|ZP_01797785.1| ATP-dependent DNA helicase rep [Haemophilus influenzae R3021] gi|145273078|gb|EDK12957.1| ATP-dependent DNA helicase rep [Haemophilus influenzae 22.4-21] Length = 670 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67 >gi|77409591|ref|ZP_00786269.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae COH1] gi|77171802|gb|EAO74993.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae COH1] Length = 759 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAAREMRERAIALNPA 78 >gi|254168521|ref|ZP_04875365.1| UvrD/REP helicase domain protein [Aciduliprofundum boonei T469] gi|197622576|gb|EDY35147.1| UvrD/REP helicase domain protein [Aciduliprofundum boonei T469] Length = 927 Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIIT 87 + A AG+GKT L +R+L LLL P+ ++ T T+ AA M RV +T Sbjct: 41 ILAGAGAGKTETLTRRILYLLLYKNVPAEEIVAFTFTEKAAQSMKSRVYNQVT 93 >gi|90424770|ref|YP_533140.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18] gi|90106784|gb|ABD88821.1| ATP-dependent DNA helicase, Rep family [Rhodopseudomonas palustris BisB18] Length = 866 Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L + A P +L +T T AA EM R+ +++ Sbjct: 56 VLAGAGTGKTRVLTSRIAHILSSGRARPGEILSVTFTNKAAREMKLRLGQML 107 >gi|309751752|gb|ADO81736.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae R2866] Length = 671 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67 >gi|262403764|ref|ZP_06080322.1| DNA helicase IV [Vibrio sp. RC586] gi|262350268|gb|EEY99403.1| DNA helicase IV [Vibrio sp. RC586] Length = 687 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L RV LL ++ A P +L + + AA EM+ R+ Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHLAKPEQILMVAFARDAAQEMAERL 264 >gi|149187526|ref|ZP_01865823.1| UvrD/REP helicase [Vibrio shilonii AK1] gi|148838406|gb|EDL55346.1| UvrD/REP helicase [Vibrio shilonii AK1] Length = 690 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 28/48 (58%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 A AG+GKT+ L + +LL+ P +L +T + A+AE++ R I Sbjct: 35 AGAGTGKTNTLAHKTAQLLVQGVPPEKILLVTFARRASAELASRANRI 82 >gi|145631680|ref|ZP_01787443.1| ATP-dependent DNA helicase rep [Haemophilus influenzae R3021] gi|144982703|gb|EDJ90239.1| ATP-dependent DNA helicase rep [Haemophilus influenzae R3021] Length = 671 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67 >gi|15602924|ref|NP_245996.1| hypothetical protein PM1059 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721395|gb|AAK03143.1| Rep [Pasteurella multocida subsp. multocida str. Pm70] Length = 671 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEM 78 K +Q T V A AGSGKT +++ ++ L+ + P + +T T AA EM Sbjct: 4 NKQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAYLVAKCGYVPRQIAAVTFTNKAAREM 63 Query: 79 SHRV 82 RV Sbjct: 64 KERV 67 >gi|24371066|dbj|BAC22107.1| RecB [Bacteroides thetaiotaomicron] Length = 79 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL 83 A+AGSGKT L ++LL+ N +L +T T A AEM R+L Sbjct: 9 ASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERIL 55 >gi|68249227|ref|YP_248339.1| ATP-dependent DNA helicase [Haemophilus influenzae 86-028NP] gi|68057426|gb|AAX87679.1| ATP-dependent DNA helicase rep [Haemophilus influenzae 86-028NP] Length = 670 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67 >gi|16272592|ref|NP_438809.1| ATP-dependent DNA helicase [Haemophilus influenzae Rd KW20] gi|1172905|sp|P44804|REP_HAEIN RecName: Full=ATP-dependent DNA helicase rep gi|1573648|gb|AAC22309.1| ATP-dependent DNA helicase (rep) [Haemophilus influenzae Rd KW20] Length = 670 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67 >gi|301169366|emb|CBW28966.1| DNA helicase and single-stranded DNA-dependent ATPase [Haemophilus influenzae 10810] Length = 670 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67 >gi|262173932|ref|ZP_06041609.1| DNA helicase IV [Vibrio mimicus MB-451] gi|261891290|gb|EEY37277.1| DNA helicase IV [Vibrio mimicus MB-451] Length = 687 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L RV LL ++ A P +L + + AA EM+ R+ Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHLAKPEQILMVAFARDAAEEMAERL 264 >gi|190572176|ref|YP_001970021.1| putative ATP-dependent DNA helicase Rep [Stenotrophomonas maltophilia K279a] gi|190010098|emb|CAQ43706.1| putative ATP-dependent DNA helicase Rep [Stenotrophomonas maltophilia K279a] Length = 658 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++V+++ L+ + +P+ + +T T +A EM RV Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIGSGRYPARRIAAITFTNKSAKEMRERV 68 >gi|161789260|ref|YP_001595635.1| UvrD-like helicase IV [Vibrio sp. 23023] gi|161761385|gb|ABX77031.1| UvrD-like helicase IV [Vibrio sp. 23023] Length = 861 Score = 37.0 bits (84), Expect = 2.6, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 23/129 (17%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII-------TAW 89 A AG+GKT ++V R L+ + A S +L L + + AA EM R+ E + + + Sbjct: 113 AGAGTGKTSVMVGRTGYLVNSGQARSSDILMLAYGRVAAQEMDERIKEKLGFDDVKASTF 172 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 L +I+SA ++GK P+ S LE +K + +H E +M+ Sbjct: 173 HSLGVKIISA----VEGKAPSLSK-----------LEDDPQVKSKWMHDEIETLMRDSRY 217 Query: 150 EANITSHFA 158 +A + +F+ Sbjct: 218 KAALLDYFS 226 >gi|58584885|ref|YP_198458.1| superfamily I DNA/RNA helicase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419201|gb|AAW71216.1| Superfamily I DNA and RNA helicase, UvrD [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 638 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 A AG+GKT + R+ ++ AH +L +T T AA EM RVL++ Sbjct: 27 AGAGTGKTRTITSRIAHIIRNGYAHSDEILAVTFTNKAANEMVSRVLKL 75 >gi|309973857|gb|ADO97058.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae R2846] Length = 673 Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 67 >gi|295112231|emb|CBL28981.1| Superfamily I DNA and RNA helicases [Synergistetes bacterium SGP1] Length = 682 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L +V L+ A P + +T T AA EM RV ++ Sbjct: 29 AGAGSGKTRVLTHKVAWLIAEGLARPWEITAVTFTNKAAGEMRERVSALV 78 >gi|257093991|ref|YP_003167632.1| exodeoxyribonuclease V subunit beta [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046515|gb|ACV35703.1| exodeoxyribonuclease V, beta subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 1239 Score = 36.6 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 6/139 (4%) Query: 36 VSANAGSGKT-HILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL-EIITAWSHLS 93 + A+AG+GKT ++ + LL +L +T T AA AE+ R+ I+ ++L Sbjct: 28 IEASAGTGKTWNLCGLYLRLLLEKGLDAPQILVVTFTNAATAELRERIRSRIVDVLAYLQ 87 Query: 94 DEILSAE--ITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 +A+ +T++ N + D + R L L T V TIH FC+ + + P Sbjct: 88 RGASAADPFVTRLVAAVENNASVDRPQMRMRLEAALHTFDEAAVFTIHGFCQRALSETPF 147 Query: 150 EANITSHFAIADEEQSKKL 168 A + + ++Q +L Sbjct: 148 AAGLPFSLDLLHDDQPLRL 166 >gi|290580396|ref|YP_003484788.1| ATP-dependent DNA helicase [Streptococcus mutans NN2025] gi|254997295|dbj|BAH87896.1| ATP-dependent DNA helicase [Streptococcus mutans NN2025] Length = 758 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFINPWNILAITFTNKAACEMKERAFALNAA 78 >gi|1075208|pir||D64084 helicase (EC 3.6.1.-) rep - Haemophilus influenzae (strain Rd KW20) Length = 698 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 T V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 43 TGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERV 95 >gi|150388771|ref|YP_001318820.1| ATP-dependent DNA helicase PcrA [Alkaliphilus metalliredigens QYMF] gi|149948633|gb|ABR47161.1| ATP-dependent DNA helicase PcrA [Alkaliphilus metalliredigens QYMF] Length = 724 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ L+ P +L +T T AA EM R+ +++ Sbjct: 25 AGAGSGKTRVLTHRIAYLVEELGVSPYHILSITFTNKAAREMKERIHQLL 74 >gi|331694979|ref|YP_004331218.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190] gi|326949668|gb|AEA23365.1| UvrD/REP helicase [Pseudonocardia dioxanivorans CB1190] Length = 682 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Query: 13 TIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLT 69 T D + EQL A + P V A AG+GKT + +R+ L+A H P +L +T Sbjct: 2 TADPLHDLDEEQLAAVTAPRGPVCVLAGAGTGKTRTITRRIAH-LVATGHVAPGQVLAVT 60 Query: 70 HTKAAAAEMSHRV 82 T AA E+ R+ Sbjct: 61 FTARAAGELRTRL 73 >gi|323694559|ref|ZP_08108725.1| UvrD/REP family ATP-dependent DNA helicase [Clostridium symbiosum WAL-14673] gi|323501327|gb|EGB17223.1| UvrD/REP family ATP-dependent DNA helicase [Clostridium symbiosum WAL-14673] Length = 1073 Score = 36.6 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 R+ V A G+GKT L R+L LL PS + +T T AAAE+ R+ Sbjct: 486 RAVSVKAGPGTGKTGTLTARILHLLKERGVKPSEITAVTFTNKAAAELRQRL 537 >gi|323359568|ref|YP_004225964.1| superfamily I DNA and RNA helicase [Microbacterium testaceum StLB037] gi|323275939|dbj|BAJ76084.1| superfamily I DNA and RNA helicase [Microbacterium testaceum StLB037] Length = 1095 Score = 36.6 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77 T + + P A V A AGSGKT + RV+ L+AN +L LT T+ AA E Sbjct: 20 TPEQTAVIESPLAPALVVAGAGSGKTETMAGRVV-WLVANGIVRRDEVLGLTFTRKAAGE 78 Query: 78 MSHRV 82 ++ R+ Sbjct: 79 LAERI 83 >gi|294084860|ref|YP_003551620.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664435|gb|ADE39536.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322] Length = 914 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%) Query: 3 YHNSFQEHSETIDLISQT-KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANA 60 Y ++ + +TI+ T K Q + D R+ V A AG+GKT +V +V L+ A Sbjct: 23 YRFRYKSYFDTIEKFPLTVKQRQSVIVDEKRNL-VIAGAGTGKTSTVVGKVGFLVKTKRA 81 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLE 84 P+ +L + + + AA E+ R+ E Sbjct: 82 KPNEILAIAYNRNAARELRERIKE 105 >gi|209525368|ref|ZP_03273909.1| ATP-dependent DNA helicase PcrA [Arthrospira maxima CS-328] gi|209494219|gb|EDZ94533.1| ATP-dependent DNA helicase PcrA [Arthrospira maxima CS-328] Length = 779 Score = 36.6 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%) Query: 12 ETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 E++D ++ S Q A + V A AGSGKT L RV L+ + +P +L +T Sbjct: 2 ESVDFLTSLNSSQRQAVEHFCGPMLVVAGAGSGKTRALTYRVANLIDNHKVNPENILAVT 61 Query: 70 HTKAAAAEMSHRVLEI 85 T AA E+ +R+ I Sbjct: 62 FTNKAAREIKNRIESI 77 >gi|163801629|ref|ZP_02195527.1| helicase IV [Vibrio sp. AND4] gi|159174546|gb|EDP59348.1| helicase IV [Vibrio sp. AND4] Length = 689 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L RV LL ++ A LL L + AA EM R+++ + Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAAKEMKERLIDKV 268 >gi|323487050|ref|ZP_08092359.1| UvrD/REP helicase [Clostridium symbiosum WAL-14163] gi|323399641|gb|EGA92030.1| UvrD/REP helicase [Clostridium symbiosum WAL-14163] Length = 1073 Score = 36.6 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 R+ V A G+GKT L R+L LL PS + +T T AAAE+ R+ Sbjct: 486 RAVSVKAGPGTGKTGTLTARILHLLKERGVKPSEITAVTFTNKAAAELRQRL 537 >gi|255326995|ref|ZP_05368071.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296] gi|255296212|gb|EET75553.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296] Length = 1292 Score = 36.6 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 9/72 (12%) Query: 41 GSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM-------SHRVLEI--ITAWSH 91 G+GKTH L +R LR L P+ LL L T+ AA M S R L + AW+ Sbjct: 11 GTGKTHHLTERALRYLADGNDPARLLILAPTRTAATRMRDTIAASSDRSLSVAPTRAWAA 70 Query: 92 LSDEILSAEITK 103 + ++L T+ Sbjct: 71 YAFDLLKRAQTR 82 >gi|240139359|ref|YP_002963834.1| UvrD/REP helicase [Methylobacterium extorquens AM1] gi|240009331|gb|ACS40557.1| UvrD/REP helicase [Methylobacterium extorquens AM1] Length = 615 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEMSHRV 82 RS ++A AG+GKT IL Q+ LL PS +L ++ + AAA + RV Sbjct: 30 RSVAITAGAGAGKTEILAQKAAYLLQTGICPSPRRILAISFKRDAAATLGDRV 82 >gi|268592938|ref|ZP_06127159.1| ATP-dependent DNA helicase Rep [Providencia rettgeri DSM 1131] gi|291311730|gb|EFE52183.1| ATP-dependent DNA helicase Rep [Providencia rettgeri DSM 1131] Length = 674 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 18/120 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLE---------- 84 V A AGSGKT ++ ++ L+ + P + +T T AA EM RV + Sbjct: 20 VLAGAGSGKTRVITNKIAHLIRQCGYQPRQIAAVTFTNKAAREMKERVAQTLGKKEARGL 79 Query: 85 IITAWSHLSDEILSAEITKIQGKKPN------KSDMSKARHLLITILETPGGLKVQTIHA 138 II+ + L EI+ E K G K N + M+ + L +LE L Q I A Sbjct: 80 IISTFHTLGLEIIKREY-KALGIKANFSLFDDQDQMALLKELTFDLLEEDKDLLKQLISA 138 >gi|13476750|ref|NP_108319.1| ATP-dependent DNA helicase [Mesorhizobium loti MAFF303099] gi|14027511|dbj|BAB53780.1| ATP-dependent DNA helicase [Mesorhizobium loti MAFF303099] Length = 589 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80 SEQ LA D ++A GSGKT +++ ++ R + A P C+T+T A E+ Sbjct: 5 SEQKLAVDCPDDLMLTACPGSGKTRVIISKLSRAVDAIRGTPRVAGCITYTNTAVHEIET 64 Query: 81 RVLEIITAWSHLSDE 95 R+ + S + DE Sbjct: 65 RLRQ----HSQVGDE 75 >gi|257054747|ref|YP_003132579.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM 43017] gi|256584619|gb|ACU95752.1| DNA/RNA helicase, superfamily I [Saccharomonospora viridis DSM 43017] Length = 1090 Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCL 68 +E + L T + + + P A V A AG+GKT + RV+ L+AN P +L L Sbjct: 18 AEALGLPVPTPEQAAVVAAPPEPALVVAGAGAGKTETMAARVV-WLVANGLVTPDRVLGL 76 Query: 69 THTKAAAAEMS 79 T T+ AA +++ Sbjct: 77 TFTRKAARQLA 87 >gi|166714219|ref|ZP_02245426.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 658 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++V+++ L+ +P+ + +T T +A EM RV + I Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMGERVAKRIRG 74 >gi|325262187|ref|ZP_08128925.1| ATP-dependent DNA helicase PcrA [Clostridium sp. D5] gi|324033641|gb|EGB94918.1| ATP-dependent DNA helicase PcrA [Clostridium sp. D5] Length = 741 Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R+ L+ +P +L +T T AA EM RV ++ Sbjct: 24 ILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAGEMRERVDNLV 75 >gi|322384701|ref|ZP_08058369.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150400|gb|EFX43893.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 913 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 A AG+GKT +L R LL + P +L +T T AAAEM R+ ++ Sbjct: 73 AGAGTGKTSVLTCRAAYLLKVRQVDPRQILLVTFTSKAAAEMRERLADL 121 >gi|257068318|ref|YP_003154573.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM 4810] gi|256559136|gb|ACU84983.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM 4810] Length = 1094 Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77 T + + P V A AGSGKT + RV+ L+AN P +L LT T+ AA E Sbjct: 27 TAEQTAVIEAPLAPMLVVAGAGSGKTETMASRVV-WLIANGIVEPRQVLGLTFTRKAAHE 85 Query: 78 MSHRV 82 + R+ Sbjct: 86 LGERI 90 >gi|254517672|ref|ZP_05129728.1| UvrD/REP helicase [Clostridium sp. 7_2_43FAA] gi|226911421|gb|EEH96622.1| UvrD/REP helicase [Clostridium sp. 7_2_43FAA] Length = 749 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L R+ ++ P +L +T T AA EM RV +I Sbjct: 36 AGAGSGKTRVLTHRMAHMIDDLGILPYKILAITFTNKAAKEMKDRVKALI 85 >gi|254426856|ref|ZP_05040563.1| exodeoxyribonuclease V, beta subunit [Alcanivorax sp. DG881] gi|196193025|gb|EDX87984.1| exodeoxyribonuclease V, beta subunit [Alcanivorax sp. DG881] Length = 1198 Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 15/159 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLE-I 85 + A+AG+GKT L LRL+L + P +L +T T+AA E+ R+ + + Sbjct: 19 IEASAGTGKTFTLAALYLRLVLGHGDENGFSRPLLPPEILVVTFTEAATEELRERIRDRL 78 Query: 86 ITAWSHLSDEILSAE---ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 A +D A+ + ++ D ++ L + + TIH FC Sbjct: 79 ADAARIFADSNAEADDPVLAELLNDYSAPDDRARCAQRLEAAAQWMDEAAIYTIHGFCNR 138 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 +++Q ++ S F++ +E + + A + +I+ Sbjct: 139 MLKQHAFDSG--SLFSLELQEDASDEQQMAARDYWRTII 175 >gi|317478934|ref|ZP_07938081.1| UvrD/REP helicase [Bacteroides sp. 4_1_36] gi|316904911|gb|EFV26718.1| UvrD/REP helicase [Bacteroides sp. 4_1_36] Length = 1099 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 11/133 (8%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHL-SD 94 A+AGSGKT L ++ L+ N +L +T T A AEM R+L ++ W S Sbjct: 8 ASAGSGKTFTLAVEYIKHLIINPRAYRQILAVTFTNKATAEMKERILTQLYGIWKGAPSS 67 Query: 95 EILSAEIT--KIQGKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 E I K++ K+ ++ +A L +L +V+TI +F +++M+ Sbjct: 68 EAYLERIKNYKLKIKEEGGDGLTDGEIRQRAGMALQYMLHDYSRFRVETIDSFFQSVMRN 127 Query: 147 FPLEANITSHFAI 159 E ++ + I Sbjct: 128 LARELELSPNLNI 140 >gi|302554000|ref|ZP_07306342.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM 40736] gi|302471618|gb|EFL34711.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM 40736] Length = 760 Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AG+GKT + R+ + A HPS++L +T T AA EM R+ ++ A Sbjct: 70 VLAGAGTGKTRAITHRIAYGVRAGILHPSSVLAVTFTNRAAGEMRGRLRQLGAA 123 >gi|288958808|ref|YP_003449149.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Azospirillum sp. B510] gi|288911116|dbj|BAI72605.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Azospirillum sp. B510] Length = 773 Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 39/137 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AG+GKT +L R+ LL+ A +L +T T AA EM RV Sbjct: 49 VLAGAGTGKTRVLTTRLAHLLMTRRAAAFQILAVTFTNKAAREMRERV------------ 96 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A + I+ P G + T HA I+++ + Sbjct: 97 ----AHLVGIE----------------------PEGWWLGTFHALAARILRRHAELVGLK 130 Query: 155 SHFAIADEEQSKKLIEE 171 S+F I D + +LI++ Sbjct: 131 SNFTILDTDDQVRLIKQ 147 >gi|262164920|ref|ZP_06032658.1| DNA helicase IV [Vibrio mimicus VM223] gi|262027300|gb|EEY45967.1| DNA helicase IV [Vibrio mimicus VM223] Length = 687 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L RV LL ++ A P +L + + AA EM+ R+ Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHLAKPEQILMVAFARDAAEEMAERL 264 >gi|260912802|ref|ZP_05919288.1| ATP-dependent helicase PcrA [Pasteurella dagmatis ATCC 43325] gi|260633180|gb|EEX51345.1| ATP-dependent helicase PcrA [Pasteurella dagmatis ATCC 43325] Length = 671 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 T V A AGSGKT +++ ++ L+ + P + +T T AA EM RV + I Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAHLVEKCGYLPRQIAAVTFTNKAAREMKERVAQSI 71 >gi|256827426|ref|YP_003151385.1| DNA/RNA helicase, superfamily I [Cryptobacterium curtum DSM 15641] gi|256583569|gb|ACU94703.1| DNA/RNA helicase, superfamily I [Cryptobacterium curtum DSM 15641] Length = 841 Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 39/137 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT +L R+ ++ P +L +T T AAAEM R+ ++ + Sbjct: 25 VLAGAGSGKTRVLTYRIAHMIEDLGVAPWEILAITFTNKAAAEMRERLGALVGPAAR--- 81 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 G+ V T H+ C I++ T Sbjct: 82 -----------------------------------GMWVSTFHSMCVRILRANAEVIGFT 106 Query: 155 SHFAIADEEQSKKLIEE 171 +F I ++ SK+LI++ Sbjct: 107 KNFTIYADDDSKRLIKD 123 >gi|123965572|ref|YP_001010653.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9515] gi|123199938|gb|ABM71546.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9515] Length = 802 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 20/145 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+ ++ P +L +T T AA EM R L++ Sbjct: 29 VVAGAGSGKTKALTHRIANLIENHSVDPHNILAVTFTNKAAKEMKAR-LQV--------- 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITIL--ETPGGLKVQTIHAFCEAIMQ------Q 146 +L+ E+ Q +P + ++ L T + E L + T H+ +++ Q Sbjct: 79 -LLAQELAFNQFGQPWATLKEFDQNQLRTNIDQERLKDLWIGTFHSLFSRLLRYDIEKYQ 137 Query: 147 FPLEANITSHFAIADEEQSKKLIEE 171 P T F+I DE S+ L++E Sbjct: 138 DPEGLRWTRQFSIYDETDSQTLVKE 162 >gi|104779936|ref|YP_606434.1| exonuclease V subunit beta [Pseudomonas entomophila L48] gi|95108923|emb|CAK13619.1| exonuclease V, beta subunit [Pseudomonas entomophila L48] Length = 1223 Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 13/131 (9%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV- 82 S + A+AG+GKT + LRL+L + P +L +T T AA E+ R+ Sbjct: 16 SQLIEASAGTGKTFTISALYLRLILGHGGEQGFARELLPPQILVVTFTDAATKELRERIR 75 Query: 83 LEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 + A DE+ A+ + +++ P + A L I + + V TIH +C Sbjct: 76 TRLAEAARFFRDELDDADPLLHQLRDDYPQEHWPRCANRLEIAV-QWMDEAAVSTIHGWC 134 Query: 141 EAIMQQFPLEA 151 + ++++ ++ Sbjct: 135 QRMLREHAFDS 145 >gi|86605998|ref|YP_474761.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-3-3Ab] gi|86554540|gb|ABC99498.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-3-3Ab] Length = 776 Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 28/149 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS- 93 V A AGSGKT L R+ L+ P +L +T T AA EM R+ ++ Sbjct: 22 VVAGAGSGKTRTLAYRIAHLIRHYRVDPEEILAVTFTNKAAREMKERIEQLFAEQEAQEQ 81 Query: 94 -----DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ--- 145 +E+ A+ T+++ S H I L + T H+ I++ Sbjct: 82 FGIPLEELEPAQATRLK---------SAVYHRWIK------PLWIGTFHSLFAQILRLEI 126 Query: 146 ---QFPLEANITSHFAIADEEQSKKLIEE 171 Q P T +F+I DE ++ L++E Sbjct: 127 EKYQDPKGRKWTRNFSIFDESDAQSLVKE 155 >gi|84687310|ref|ZP_01015190.1| Putative uvrD/DNA Helicase II [Maritimibacter alkaliphilus HTCC2654] gi|84664743|gb|EAQ11227.1| Putative uvrD/DNA Helicase II [Rhodobacterales bacterium HTCC2654] Length = 794 Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 38/135 (28%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AG+GKT L R+ LL + A P+ +L +T T AA EM RV Sbjct: 33 AGAGTGKTKALTARIAHLLNTHTARPNEILAVTFTNKAAREMKDRV-------------- 78 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 RHL + P + T HA C ++++ + S+ Sbjct: 79 --------------------GRHLGEAVEGMPW---LGTFHAICVKLLRRHAELVGLKSN 115 Query: 157 FAIADEEQSKKLIEE 171 F I D + +L+++ Sbjct: 116 FTILDTDDQIRLMKQ 130 >gi|296118828|ref|ZP_06837404.1| helicase, UvrD/Rep family [Corynebacterium ammoniagenes DSM 20306] gi|295968317|gb|EFG81566.1| helicase, UvrD/Rep family [Corynebacterium ammoniagenes DSM 20306] Length = 1087 Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRV 82 V+A AG+GKT + RV+ L+AN + P +L LT T+ AA ++ R+ Sbjct: 38 VTAGAGAGKTETMASRVVS-LVANGYVRPEQVLGLTFTRKAAQQLEQRI 85 >gi|284992623|ref|YP_003411177.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160] gi|284065868|gb|ADB76806.1| UvrD/REP helicase [Geodermatophilus obscurus DSM 43160] Length = 1062 Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 ++Q + P V A G+GKT +V+ V + P +L LT ++ AAAE+ R Sbjct: 30 TQQAVVDHPGGPLLVLAGPGTGKTTTIVEAVAARIDGGVDPEQILVLTFSRRAAAELRDR 89 Query: 82 V 82 V Sbjct: 90 V 90 >gi|228963385|ref|ZP_04124546.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar sotto str. T04001] gi|228796279|gb|EEM43726.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar sotto str. T04001] Length = 168 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 A AGSGKT +L R+ LL P +L +T T AA EM R+ Sbjct: 34 AGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKAAREMRERI 79 >gi|228477150|ref|ZP_04061788.1| ATP-dependent nuclease subunit A [Streptococcus salivarius SK126] gi|228251169|gb|EEK10340.1| ATP-dependent nuclease subunit A [Streptococcus salivarius SK126] Length = 1217 Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 19/135 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 VSA+AGSGKT ++V+R+L ++ L T T AA E+ R+ + +T Sbjct: 45 VSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELKERLEKRLT-------- 96 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 ++ + + + R L + G + T+ AF + ++ Q+ ++ Sbjct: 97 -----------EQLGQVETDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSP 145 Query: 156 HFAIADEEQSKKLIE 170 F I + + L++ Sbjct: 146 IFRIMTDPAEQTLMK 160 >gi|78779497|ref|YP_397609.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Prochlorococcus marinus str. MIT 9312] gi|78712996|gb|ABB50173.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Prochlorococcus marinus str. MIT 9312] Length = 1208 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 32/138 (23%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A+AG+GK+ L VLR +L P +L L+ TK +E+ ++L Sbjct: 15 VEASAGTGKSFTLAHLVLRNVLEKKIKPDEILLLSFTKNTCSELRDKIL----------- 63 Query: 95 EILSAEITKIQGKKPNKSDMS---KARHLLI---------------TILETPGGLKVQTI 136 L + K+ + N+S + K +L + L+V T Sbjct: 64 --LRFQDLKLYLQNHNESKIDNTLKDWYLKFKEKEKSKKKIISEIDNFVNEIYKLQVTTF 121 Query: 137 HAFCEAIMQQFPLEANIT 154 H+FC I+ ++ +E +T Sbjct: 122 HSFCNNIINEYSIEIGVT 139 >gi|261879280|ref|ZP_06005707.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270334111|gb|EFA44897.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 1115 Score = 36.6 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 5/177 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHLSD- 94 A+AGSGKT L ++LL+ +L +T T A EM R+L ++ + L D Sbjct: 13 ASAGSGKTFTLAVEYIKLLVQEPQNYRYILAVTFTNKATEEMKRRILGQLYGIANALPDS 72 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E + K +++ + + L IL +V+TI +F + I+ E +T Sbjct: 73 ESYMDALHKAFPAMADRAIRERVKEALGLILHHYHEFRVETIDSFFQRILHNLSRELGLT 132 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 ++ + + ++ +A + + +I DN+ L I E NDE +I I Sbjct: 133 ANLQVGLND--FEVESQAVDNIIDNIQQDNDPLLAWLMDFIKEKVNDEKNWNVIGPI 187 >gi|258623609|ref|ZP_05718602.1| helicase IV [Vibrio mimicus VM573] gi|258584097|gb|EEW08853.1| helicase IV [Vibrio mimicus VM573] Length = 549 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L RV LL ++ A P +L + + AA EM+ R+ Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHLAKPEQILMVAFARDAAEEMAERL 264 >gi|253583576|ref|ZP_04860774.1| ATP-dependent DNA helicase pcrA [Fusobacterium varium ATCC 27725] gi|251834148|gb|EES62711.1| ATP-dependent DNA helicase pcrA [Fusobacterium varium ATCC 27725] Length = 725 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT + R+ ++ P +L +T T AA EM RV +++ Sbjct: 26 AGAGSGKTRTITYRIAHMIQELGISPYKILAVTFTNKAAKEMKERVEDLV 75 >gi|148554134|ref|YP_001261716.1| ATP-dependent DNA helicase UvrD [Sphingomonas wittichii RW1] gi|148499324|gb|ABQ67578.1| ATP-dependent DNA helicase UvrD [Sphingomonas wittichii RW1] Length = 892 Score = 36.6 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 V A AG+GKT L R+ L+ A PS +L +T T AA EM RV Sbjct: 166 VLAGAGTGKTAALTARLAHLVATRRAWPSEILAVTFTNKAAREMRERV 213 >gi|124506203|ref|XP_001351699.1| helicase, belonging to UvrD family, putative [Plasmodium falciparum 3D7] gi|23504627|emb|CAD51506.1| helicase, belonging to UvrD family, putative [Plasmodium falciparum 3D7] Length = 1441 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 17/130 (13%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A GSGKT L R+++ ++ +++C+T T AA+++ ++++ I L D + Sbjct: 56 ACPGSGKTSTLTARIIKSIIE--EKQSIVCITFTNYAASDLKDKIMKKINC---LIDICV 110 Query: 98 SAEITKIQGKK---------PNKSDMS-KARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 +I + NK ++ K + +L T + + TIH+FC I+ ++ Sbjct: 111 DNKINQKLFNNKNNKINFSLKNKCTLNNKMNKSIFKVLNTV--MFIGTIHSFCRYILYKY 168 Query: 148 PLEANITSHF 157 I + F Sbjct: 169 KGTFKILTDF 178 >gi|297202230|ref|ZP_06919627.1| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083] gi|297148066|gb|EDY54287.2| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083] Length = 469 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 35/154 (22%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + A AGSGKT ++ RV+ L+ P +L LT T AA E++ RV + Sbjct: 49 PPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAAGELAERVRK---- 104 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 ++ A +T P+ PG + T HAF ++ Sbjct: 105 ------ALVKAGVTDPDVIDPDNP---------------PGEPVISTYHAFAGRLL---- 139 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 T H E + +L+ +A + LA+ +L Sbjct: 140 -----TDHGLRIGLEPTSRLLADATRYQLAARVL 168 >gi|254468181|ref|ZP_05081587.1| ATP-dependent DNA helicase PcrA [beta proteobacterium KB13] gi|207086991|gb|EDZ64274.1| ATP-dependent DNA helicase PcrA [beta proteobacterium KB13] Length = 715 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 47/130 (36%), Gaps = 39/130 (30%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 SA + A AGSGKT +L R+ L+ P+ +L +T T AA EM R+ Sbjct: 23 SALILAGAGSGKTKVLTSRISWLIHNQIVSPNGILAVTFTNKAANEMLSRI--------- 73 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 + + P G+ V T H C ++ EA Sbjct: 74 -----------------------------SLQLGMNPRGMWVGTFHGLCNRFLRLHYKEA 104 Query: 152 NITSHFAIAD 161 ++ F I D Sbjct: 105 SLPQTFQILD 114 >gi|308177918|ref|YP_003917324.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis Re117] gi|307745381|emb|CBT76353.1| putative ATP-dependent DNA helicase [Arthrobacter arilaitensis Re117] Length = 707 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 2/79 (2%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAH-PSTLL 66 ++ +DL++ +EQ A++ + A AG+GKT + R+ + + P+++L Sbjct: 5 DNPPAVDLLAGLDAEQRQAAETLSGPLCILAGAGTGKTRAITHRIAHGVHTGIYNPTSVL 64 Query: 67 CLTHTKAAAAEMSHRVLEI 85 LT T AAAEM R+ ++ Sbjct: 65 ALTFTTRAAAEMRTRLRQL 83 >gi|304440549|ref|ZP_07400436.1| ATP-dependent DNA helicase PcrA [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371027|gb|EFM24646.1| ATP-dependent DNA helicase PcrA [Peptoniphilus duerdenii ATCC BAA-1640] Length = 729 Score = 36.6 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ +++ L+ +PS +L +T T AA EM RV +I Sbjct: 24 VLAGAGSGKTSVVTKKIAYLMEEKKVYPSKILAITFTNKAANEMKTRVERLI 75 >gi|293391274|ref|ZP_06635608.1| ATP-dependent DNA helicase Rep [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951808|gb|EFE01927.1| ATP-dependent DNA helicase Rep [Aggregatibacter actinomycetemcomitans D7S-1] Length = 671 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLE---------- 84 V A AGSGKT +++ ++ L+ + P + +T T AA EM RV + Sbjct: 20 VLAGAGSGKTRVIINKIAHLIDKCGYFPKQIAAVTFTNKAAREMKERVAQSIGKAQSKGL 79 Query: 85 IITAWSHLSDEILSAEITKIQGKKPN 110 I++ + L +I+ E ++ G K N Sbjct: 80 IVSTFHTLGFDIIKGEYKQL-GFKAN 104 >gi|262203378|ref|YP_003274586.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247] gi|262086725|gb|ACY22693.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247] Length = 1119 Score = 36.6 bits (83), Expect = 2.9, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 3/74 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCL 68 + + L + T + + P V A AG+GKT + RV+ L+AN P +L L Sbjct: 8 AAALGLPTPTAEQAAVIEGPIEPMLVVAGAGAGKTETMAARVV-WLVANQLIGPDEILGL 66 Query: 69 THTKAAAAEMSHRV 82 T T+ AA+E+ R+ Sbjct: 67 TFTRKAASELGARI 80 >gi|227485018|ref|ZP_03915334.1| ATP-dependent DNA helicase PcrA [Anaerococcus lactolyticus ATCC 51172] gi|227237015|gb|EEI87030.1| ATP-dependent DNA helicase PcrA [Anaerococcus lactolyticus ATCC 51172] Length = 731 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRV-LRLLLANAHPSTLLCLTHT 71 +D ++ + E +L D V A AGSGKT +L + ++ + P ++ +T T Sbjct: 2 NLDRLNDRQKEAVLHKDG--PLLVLAGAGSGKTSVLTSSIAYKIKEESVDPRNIIAITFT 59 Query: 72 KAAAAEMSHRV 82 AA EM RV Sbjct: 60 NKAANEMKERV 70 >gi|225351572|ref|ZP_03742595.1| hypothetical protein BIFPSEUDO_03169 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157916|gb|EEG71199.1| hypothetical protein BIFPSEUDO_03169 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 580 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AG+GKT +V + LL A P +L L+ TKA+A EMS R+ + Sbjct: 39 VLAGAGTGKTTTIVGYIAWLLNTGTATPEEILVLSFTKASADEMSSRITQ 88 >gi|315633354|ref|ZP_07888645.1| ATP-dependent helicase PcrA [Aggregatibacter segnis ATCC 33393] gi|315477854|gb|EFU68595.1| ATP-dependent helicase PcrA [Aggregatibacter segnis ATCC 33393] Length = 673 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +++ ++ L+ + P + +T T AA EM RV + I Sbjct: 22 VLAGAGSGKTRVIINKIAHLIGKCGYLPKQIAAVTFTNKAAREMKERVAQSI 73 >gi|238755779|ref|ZP_04617111.1| ATP-dependent DNA helicase rep [Yersinia ruckeri ATCC 29473] gi|238706006|gb|EEP98391.1| ATP-dependent DNA helicase rep [Yersinia ruckeri ATCC 29473] Length = 672 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 T V A AGSGKT ++ ++ L+ + PS + +T T AA EM RV + + Sbjct: 15 TGPCLVLAGAGSGKTRVITNKIAHLIRQCGYKPSHIAAVTFTNKAAREMKERVAQTL 71 >gi|159901725|ref|YP_001547971.1| superfamily I DNA/RNA helicase [Herpetosiphon aurantiacus ATCC 23779] gi|159894764|gb|ABX07843.1| Superfamily I DNA and RNA helicase-like [Herpetosiphon aurantiacus ATCC 23779] Length = 722 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 7/65 (10%) Query: 15 DLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-----HPSTLLC 67 D+++ + EQ L+ S PT + +++ +AGSGKT IL R+ L ++ +P+ +C Sbjct: 172 DIVATIQPEQHRLIQSSPTTTLFINGSAGSGKTAILHHRMAYLFFSDDEREGLNPAACIC 231 Query: 68 LTHTK 72 + ++ Sbjct: 232 FSSSR 236 >gi|58579865|ref|YP_198881.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84621878|ref|YP_449250.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58424459|gb|AAW73496.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84365818|dbj|BAE66976.1| ATP-dependent DNA helicase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 658 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++V+++ L+ +P+ + +T T +A EM RV + I Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMGERVAKRIRG 74 >gi|325916135|ref|ZP_08178422.1| ATP-dependent DNA helicase Rep [Xanthomonas vesicatoria ATCC 35937] gi|325537679|gb|EGD09388.1| ATP-dependent DNA helicase Rep [Xanthomonas vesicatoria ATCC 35937] Length = 658 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++V+++ L+ +P+ + +T T +A EM RV + I Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIATGRYPAKRIAAITFTNKSAKEMRERVAKRIRG 74 >gi|297626188|ref|YP_003687951.1| DNA helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921953|emb|CBL56513.1| DNA helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 718 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMS 79 K ++ +A D V A AG+GKT + R+ +L+ A P ++L +T T AA EM Sbjct: 28 KDQRAVAVDVAGPLAVLAGAGTGKTRAITHRIAHAVLSGAQAPDSILAVTFTTRAAGEMR 87 Query: 80 HRV 82 R+ Sbjct: 88 ARL 90 >gi|160888166|ref|ZP_02069169.1| hypothetical protein BACUNI_00574 [Bacteroides uniformis ATCC 8492] gi|156862301|gb|EDO55732.1| hypothetical protein BACUNI_00574 [Bacteroides uniformis ATCC 8492] Length = 1099 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 11/133 (8%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL-EIITAWSHL-SD 94 A+AGSGKT L ++ L+ N +L +T T A AEM R+L ++ W S Sbjct: 8 ASAGSGKTFTLAVEYIKHLIINPRAYRQILAVTFTNKATAEMKERILTQLYGIWKGAPSS 67 Query: 95 EILSAEIT--KIQGKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 E I K++ K+ ++ +A L +L +V+TI +F +++M+ Sbjct: 68 EAYLERIKNYKLKIKEEGGDGLTDGEIRQRAGMALQYMLHDYSRFRVETIDSFFQSVMRN 127 Query: 147 FPLEANITSHFAI 159 E ++ + I Sbjct: 128 LARELELSPNLNI 140 >gi|325108966|ref|YP_004270034.1| UvrD/REP helicase [Planctomyces brasiliensis DSM 5305] gi|324969234|gb|ADY60012.1| UvrD/REP helicase [Planctomyces brasiliensis DSM 5305] Length = 665 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 28/51 (54%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT ++ R+ L+ +L +T T AA EM+ R+ I+ Sbjct: 27 VLAGAGTGKTRVITTRMALLIGTGTQADRILSVTFTNKAAKEMAQRLQAIL 77 >gi|92115316|ref|YP_575244.1| ATP-dependent DNA helicase Rep [Chromohalobacter salexigens DSM 3043] gi|91798406|gb|ABE60545.1| ATP-dependent DNA helicase Rep [Chromohalobacter salexigens DSM 3043] Length = 682 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 17/151 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEI--------- 85 V A AGSGKT ++ ++ L+ + +T T AA EM RV E+ Sbjct: 31 VLAGAGSGKTSVITTKIAYLIQECGMSARKIAAVTFTNKAAREMKERVGEMLQGREGHGL 90 Query: 86 -ITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILETPGGLKVQTIHAFCEA 142 ++ + L I+ E+ K G KP S D A+ LL +++ + I+A Sbjct: 91 TVSTFHTLGLNIIRGEL-KTLGYKPGFSLFDPEDAKALLRDLMQKEADTDAEQINAVQGQ 149 Query: 143 IMQ---QFPLEANITSHFAIADEEQSKKLIE 170 I Q L SH A D + + ++ E Sbjct: 150 ISQWKNDLVLPGQAISHAADEDTQYAARVYE 180 >gi|56551470|ref|YP_162309.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ZM4] gi|56543044|gb|AAV89198.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ZM4] Length = 768 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AG+GKT L R+ L+ A PS +L +T T AA EM RV +++ + Sbjct: 40 VLAGAGTGKTAALTARLAYLVETLKAWPSQILAVTFTNKAAREMQMRVGDLLGS 93 >gi|84388923|ref|ZP_00991131.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio splendidus 12B01] gi|84376987|gb|EAP93859.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio splendidus 12B01] Length = 1224 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 31/141 (21%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA---------------HPST---LLCLTHTKAAAAE 77 + A+AG+GKT + LRLLL + P T +L +T T+AA AE Sbjct: 28 IEASAGTGKTFTIAGLYLRLLLGHGTTAPQGELTEATRHHEPLTVDQILVVTFTEAATAE 87 Query: 78 MSHRV------LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + R+ I A D +++ + I D + A L+ Sbjct: 88 LRDRIRARIHDARIAFARGQSDDPVIAPLLQAI-------DDHTGAVKTLLNAERQMDEA 140 Query: 132 KVQTIHAFCEAIMQQFPLEAN 152 V TIH FC+ ++ Q E+ Sbjct: 141 AVYTIHGFCQRMLTQNAFESG 161 >gi|325125238|gb|ADY84568.1| ATP-dependent helicase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 753 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L +R+ L+ P +L +T T AA EM R ++++ Sbjct: 27 VIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLL 78 >gi|312963039|ref|ZP_07777525.1| exodeoxyribonuclease V beta subunit [Pseudomonas fluorescens WH6] gi|311282808|gb|EFQ61403.1| exodeoxyribonuclease V beta subunit [Pseudomonas fluorescens WH6] Length = 1224 Score = 36.6 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 14/132 (10%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT + LRL+L + P +L +T T AA E+ R+ Sbjct: 15 SQLIEASAGTGKTFTISALYLRLVLGHGGEVSGFGRELLPPQILVVTFTDAATKELRERI 74 Query: 83 -LEIITAWSHLSDEI--LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + + A DEI A I ++ + P + + A L I + V TIH++ Sbjct: 75 RIRLAEAARFFRDEIDQPDALIADLREEYPAEQWPACANRLDIAA-QWMDEAAVSTIHSW 133 Query: 140 CEAIMQQFPLEA 151 C+ ++++ ++ Sbjct: 134 CQRMLREHAFDS 145 >gi|241761119|ref|ZP_04759208.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374738|gb|EER64199.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 768 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AG+GKT L R+ L+ A PS +L +T T AA EM RV +++ + Sbjct: 40 VLAGAGTGKTAALTARLAYLVETLKAWPSQILAVTFTNKAAREMQMRVGDLLGS 93 >gi|260752918|ref|YP_003225811.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552281|gb|ACV75227.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 768 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AG+GKT L R+ L+ A PS +L +T T AA EM RV +++ + Sbjct: 40 VLAGAGTGKTAALTARLAYLVETLKAWPSQILAVTFTNKAAREMQMRVGDLLGS 93 >gi|194363828|ref|YP_002026438.1| ATP-dependent DNA helicase Rep [Stenotrophomonas maltophilia R551-3] gi|194346632|gb|ACF49755.1| ATP-dependent DNA helicase Rep [Stenotrophomonas maltophilia R551-3] Length = 658 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++V+++ L+ +P+ + +T T +A EM RV Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIGCGRYPARRIAAITFTNKSAKEMRERV 68 >gi|114319965|ref|YP_741648.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114226359|gb|ABI56158.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 1242 Score = 36.6 bits (83), Expect = 3.0, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 24/166 (14%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVL 83 S + A+AG+GKT + LRL+L + P +L +T T+AA E+ R+ Sbjct: 19 SRLIEASAGTGKTFTIAALYLRLVLGHGEQRAGGGPLVPPQILVVTFTEAATRELRDRIR 78 Query: 84 EIITAWS--------HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E ++ + + D +L A + + + + M++ L ++ V T Sbjct: 79 ERLSQAAAAFRDPARYPDDPVLPA--LRAEYDEHERPAMARRLELAAEWMDESA---VST 133 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 IH++C ++++ ++ S F E L+ EA + S + Sbjct: 134 IHSWCYRMLREHAFDSG--SLFTQDLEADQTALLAEAVRDYWRSFL 177 >gi|254229814|ref|ZP_04923220.1| helicase IV [Vibrio sp. Ex25] gi|262395620|ref|YP_003287473.1| DNA helicase IV [Vibrio sp. Ex25] gi|151937650|gb|EDN56502.1| helicase IV [Vibrio sp. Ex25] gi|262339214|gb|ACY53008.1| DNA helicase IV [Vibrio sp. Ex25] Length = 689 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L RV LL ++ A LL L + AA EM R+++ + Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAATEMKERLVDKV 268 >gi|325684643|gb|EGD26798.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 753 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L +R+ L+ P +L +T T AA EM R ++++ Sbjct: 27 VIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLL 78 >gi|159030780|emb|CAO88458.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 773 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT L R+ L+ + P +L +T T AA EM R+ Sbjct: 28 VVAGAGSGKTSALTYRIAHLIRHHGVDPENILAVTFTNKAAREMKTRI 75 >gi|325687804|gb|EGD29824.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK72] Length = 762 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 + A AGSGKT +L R+ L+ +P +L +T T AA EM R ++ T Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77 >gi|254669882|emb|CBA04366.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis alpha153] Length = 1204 Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L + +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130 + + L D+ LS I + +K D + R LI L+ G Sbjct: 81 SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + L+ Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178 >gi|254285740|ref|ZP_04960703.1| helicase IV [Vibrio cholerae AM-19226] gi|150424237|gb|EDN16175.1| helicase IV [Vibrio cholerae AM-19226] Length = 699 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L RV LL ++ A P +L + + AA EM+ R+ Sbjct: 229 VLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAERL 276 >gi|300813139|ref|ZP_07093516.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495893|gb|EFK31038.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 753 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L +R+ L+ P +L +T T AA EM R ++++ Sbjct: 27 VIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLL 78 >gi|282858205|ref|ZP_06267396.1| ATP-dependent nuclease subunit A (ATP-dependent helicase addA) [Pyramidobacter piscolens W5455] gi|282583957|gb|EFB89334.1| ATP-dependent nuclease subunit A (ATP-dependent helicase addA) [Pyramidobacter piscolens W5455] Length = 558 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 V A AG+GKT L R + +L +L LT T+ AA+EM R+ ++ Sbjct: 44 VGAGAGTGKTWTLAWRFVWTVLTREDVRHMLTLTFTEKAASEMRRRIAALLA 95 >gi|241761575|ref|ZP_04759662.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373883|gb|EER63416.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 1047 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86 V A GSGKT +L QR+ L+ A P+ L LT T+ A E+ RV +++ Sbjct: 496 VLAGPGSGKTKMLTQRIAHLIQKKAIPAEKCLLLTFTRRATDELKARVKQLL 547 >gi|91227913|ref|ZP_01262052.1| helicase IV [Vibrio alginolyticus 12G01] gi|91188322|gb|EAS74619.1| helicase IV [Vibrio alginolyticus 12G01] Length = 689 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L RV LL ++ A LL L + AA EM R+++ + Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAATEMKERLVDKV 268 >gi|54308421|ref|YP_129441.1| DNA helicase IV [Photobacterium profundum SS9] gi|46912849|emb|CAG19639.1| hypothetical helicase IV [Photobacterium profundum SS9] Length = 694 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 18/104 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRV-LEI-----IT 87 V A AG+GKT +LV R L+AN A P +L L + AA EM R+ L++ + Sbjct: 214 VLAGAGTGKTSVLVARA-GYLVANQAAQPEEILMLAFGRNAAEEMRERLALKVNNRIKVA 272 Query: 88 AWSHLSDEILSAEITKIQGKKPNKS-----DMSKARHLLITILE 126 + L +I I ++ ++PN S D +KA+ + T+ E Sbjct: 273 TFHALGTQI----IQSVENERPNVSPLALDDKAKAQWITSTLKE 312 >gi|313123176|ref|YP_004033435.1| ATP-dependent DNA helicase pcra [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279739|gb|ADQ60458.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 753 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L +R+ L+ P +L +T T AA EM R ++++ Sbjct: 27 VIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLL 78 >gi|296132369|ref|YP_003639616.1| ATP-dependent DNA helicase PcrA [Thermincola sp. JR] gi|296030947|gb|ADG81715.1| ATP-dependent DNA helicase PcrA [Thermincola potens JR] Length = 741 Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 + A AGSGKT +L R+ L+ P +L +T T AA EM RV Sbjct: 23 ILAGAGSGKTRVLTYRIAHLIHRKGVSPRNILAITFTNKAAQEMKERV 70 >gi|254523343|ref|ZP_05135398.1| ATP-dependent DNA helicase Rep [Stenotrophomonas sp. SKA14] gi|219720934|gb|EED39459.1| ATP-dependent DNA helicase Rep [Stenotrophomonas sp. SKA14] Length = 658 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++V+++ L+ +P+ + +T T +A EM RV Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIGCGRYPARRIAAITFTNKSAKEMRERV 68 >gi|219872059|ref|YP_002476434.1| ATP-dependent DNA helicase [Haemophilus parasuis SH0165] gi|219692263|gb|ACL33486.1| ATP-dependent DNA helicase [Haemophilus parasuis SH0165] Length = 673 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 20 VLAGAGSGKTRVIINKIAHLIARCGYSPKQIAAVTFTNKAAREMRERV 67 >gi|167855646|ref|ZP_02478404.1| ATP-dependent DNA helicase [Haemophilus parasuis 29755] gi|167853218|gb|EDS24474.1| ATP-dependent DNA helicase [Haemophilus parasuis 29755] Length = 673 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 20 VLAGAGSGKTRVIINKIAHLIARCGYSPKQIAAVTFTNKAAREMRERV 67 >gi|117928982|ref|YP_873533.1| UvrD/REP helicase [Acidothermus cellulolyticus 11B] gi|117649445|gb|ABK53547.1| UvrD/REP helicase [Acidothermus cellulolyticus 11B] Length = 1164 Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 3/54 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIIT 87 V A AGSGKT + RV+ L+AN P +L LT T+ AA E++ R+ +T Sbjct: 48 VLAGAGSGKTETMAGRVV-YLVANGIVRPEQVLGLTFTRRAATELAGRIRRRLT 100 >gi|315452622|ref|YP_004072892.1| DNA helicase II (UvrD) [Helicobacter felis ATCC 49179] gi|315131674|emb|CBY82302.1| DNA helicase II (UvrD) [Helicobacter felis ATCC 49179] Length = 626 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 9/73 (12%) Query: 28 SDPTRSAW--------VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78 ++P R A + A AGSGKT L R+ L+ + P L LT T AA EM Sbjct: 10 NEPQREACMHVKGPLLILAGAGSGKTKTLTTRLAYLIASKGVPPQNTLTLTFTNKAAKEM 69 Query: 79 SHRVLEIITAWSH 91 R +++ H Sbjct: 70 QERAGQLLRLCGH 82 >gi|302878146|ref|YP_003846710.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2] gi|302580935|gb|ADL54946.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2] Length = 565 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 Q +Q A + V A GSGKT +L R RLL N L +T T+ AAAE+ Sbjct: 2 QLNQQQARAVNALGHCSVLACPGSGKTRVLSMRAARLLSEN-KTGRLCAVTFTRDAAAEL 60 Query: 79 SHRVLEI 85 R+L + Sbjct: 61 KSRILHL 67 >gi|241759897|ref|ZP_04757997.1| exodeoxyribonuclease V, beta subunit [Neisseria flavescens SK114] gi|241319905|gb|EER56301.1| exodeoxyribonuclease V, beta subunit [Neisseria flavescens SK114] Length = 561 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 39/186 (20%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L +L +T TKAA AE+ R VL+++ Sbjct: 20 IEASAGTGKTYGIAALFTRLIVLEKKDIEKILVVTFTKAATAELKTRLRARLDEVLQVLN 79 Query: 88 AWSHLSDEI------LSAEITKIQGKKPN------------KSDMSKARHLLITILETP- 128 L E L+ K + K P+ + D ++ H LI L+ Sbjct: 80 EIQTLGGEPEHISDGLNTYYDK-EKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKAAL 138 Query: 129 ---GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE--------AKKSTL 177 + TIH FC+ +++ + ++D+ + + LI A +TL Sbjct: 139 SQFDNASIYTIHGFCQRVLRDYAFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATDTTL 198 Query: 178 ASIMLD 183 A ++ D Sbjct: 199 AQLVFD 204 >gi|153833304|ref|ZP_01985971.1| helicase IV [Vibrio harveyi HY01] gi|148870440|gb|EDL69361.1| helicase IV [Vibrio harveyi HY01] Length = 689 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L RV LL ++ A LL L + AA EM R+++ + Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAAKEMKERLVDKV 268 >gi|119867477|ref|YP_937429.1| UvrD/REP helicase [Mycobacterium sp. KMS] gi|119693566|gb|ABL90639.1| ATP-dependent DNA helicase, Rep family [Mycobacterium sp. KMS] Length = 707 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 + + + E +LA P V A AG+GKT + +R+ L+ A P +L +T T AA Sbjct: 20 LDEEQREAVLA--PRGPVCVLAGAGTGKTRTITRRIAHLVAAGHVAPGQVLAVTFTSRAA 77 Query: 76 AEMSHRV 82 EM R+ Sbjct: 78 GEMRARL 84 >gi|50120689|ref|YP_049856.1| DNA helicase IV [Pectobacterium atrosepticum SCRI1043] gi|49611215|emb|CAG74661.1| helicase IV [Pectobacterium atrosepticum SCRI1043] Length = 685 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT +LV R L+ A P +L L + AA EM+ R+ E Sbjct: 214 VLAGAGSGKTSVLVARAAWLMHRQEATPDQILLLAFGRKAAEEMNERIHE 263 >gi|325131981|gb|EGC54680.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis M6190] gi|325137812|gb|EGC60387.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis ES14902] Length = 1204 Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L + +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130 + + L D+ LS I + +K D + R LI L+ G Sbjct: 81 SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + L+ Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178 >gi|269961143|ref|ZP_06175511.1| helicase IV [Vibrio harveyi 1DA3] gi|269834094|gb|EEZ88185.1| helicase IV [Vibrio harveyi 1DA3] Length = 689 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L RV LL ++ A LL L + AA EM R+++ + Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAAKEMKERLVDKV 268 >gi|167465630|ref|ZP_02330719.1| UvrD/REP helicase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 316 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 A AG+GKT +L R LL + P +L +T T AAAEM R+ ++ Sbjct: 73 AGAGTGKTSVLTCRAAYLLKVRQVDPRQILLVTFTSKAAAEMRERLADL 121 >gi|121634579|ref|YP_974824.1| putative exodeoxyribonuclease V beta chain [Neisseria meningitidis FAM18] gi|20271140|gb|AAM18525.1|AF495855_1 RecB [Neisseria meningitidis] gi|120866285|emb|CAM10026.1| putative exodeoxyribonuclease V beta chain [Neisseria meningitidis FAM18] Length = 1204 Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L + +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130 + + L D+ LS I + +K D + R LI L+ G Sbjct: 81 SKEIAKLGDDTLSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + L+ Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178 >gi|118387235|ref|XP_001026729.1| UvrD/REP helicase family protein [Tetrahymena thermophila] gi|89308496|gb|EAS06484.1| UvrD/REP helicase family protein [Tetrahymena thermophila SB210] Length = 1021 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%) Query: 3 YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62 Y N F E E L + +++ S+ + + A AGSGKT LV R+ L+ P Sbjct: 13 YKNKFGEDCE---LRPSEEQLKIITSELRQDQKIIACAGSGKTTTLVARLKYLIDHGVSP 69 Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWS 90 +++ T A + R +E+I S Sbjct: 70 ESIIISTFNVEAGRNIQSRAMELIGEQS 97 >gi|116513593|ref|YP_812499.1| superfamily I DNA/RNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092908|gb|ABJ58061.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 753 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L +R+ L+ P +L +T T AA EM R ++++ Sbjct: 27 VIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLL 78 >gi|295093819|emb|CBK82910.1| Superfamily I DNA and RNA helicases [Coprococcus sp. ART55/1] Length = 782 Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT ++ RV L+ +P +L +T T AA EM RV I+ Sbjct: 21 ILAGAGSGKTRVITHRVAYLMEHEGVNPLNILAITFTNKAAREMRERVDLIV 72 >gi|153838730|ref|ZP_01991397.1| helicase IV [Vibrio parahaemolyticus AQ3810] gi|260901447|ref|ZP_05909842.1| UvrD/REP helicase domain protein [Vibrio parahaemolyticus AQ4037] gi|149747855|gb|EDM58735.1| helicase IV [Vibrio parahaemolyticus AQ3810] gi|308108532|gb|EFO46072.1| UvrD/REP helicase domain protein [Vibrio parahaemolyticus AQ4037] Length = 689 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L RV LL ++ A LL L + AA EM R+++ + Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAAKEMKERLVDKV 268 >gi|187923606|ref|YP_001895248.1| exodeoxyribonuclease V subunit beta [Burkholderia phytofirmans PsJN] gi|187714800|gb|ACD16024.1| exodeoxyribonuclease V, beta subunit [Burkholderia phytofirmans PsJN] Length = 1232 Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 7/118 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV---LEIITAWSH 91 + A+AG+GKT + +RLLL N + +L +T TKAA AE+ R+ L + Sbjct: 28 IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRGRLAELDRAID 87 Query: 92 LSDEILSAEITKI--QGKKPNKS-DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + D+ I ++ P + A ++ L T + TIHAFC+ +Q+ Sbjct: 88 MDDDGGDPFIRRLFETTLAPERGIAREDALKVVRRALRTFDQAAIHTIHAFCQRALQE 145 >gi|108798380|ref|YP_638577.1| UvrD/REP helicase [Mycobacterium sp. MCS] gi|108768799|gb|ABG07521.1| ATP-dependent DNA helicase, Rep family [Mycobacterium sp. MCS] Length = 714 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 + + + E +LA P V A AG+GKT + +R+ L+ A P +L +T T AA Sbjct: 27 LDEEQREAVLA--PRGPVCVLAGAGTGKTRTITRRIAHLVAAGHVAPGQVLAVTFTSRAA 84 Query: 76 AEMSHRV 82 EM R+ Sbjct: 85 GEMRARL 91 >gi|104773602|ref|YP_618582.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422683|emb|CAI97296.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 753 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L +R+ L+ P +L +T T AA EM R ++++ Sbjct: 27 VIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAITFTNKAAKEMKEREVKLL 78 >gi|328470471|gb|EGF41382.1| DNA helicase IV [Vibrio parahaemolyticus 10329] Length = 689 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L RV LL ++ A LL L + AA EM R+++ + Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAAKEMKERLVDKV 268 >gi|307709461|ref|ZP_07645918.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK564] gi|307619775|gb|EFN98894.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK564] Length = 763 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|259502570|ref|ZP_05745472.1| ATP-dependent DNA helicase PcrA [Lactobacillus antri DSM 16041] gi|259169460|gb|EEW53955.1| ATP-dependent DNA helicase PcrA [Lactobacillus antri DSM 16041] Length = 752 Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 11/97 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI--------- 85 V A AGSGKT +L RV L+ P +L +T T AA EM RV ++ Sbjct: 18 VMAGAGSGKTRVLTHRVAYLIEEKGVLPWNILAITFTNKAAKEMQERVGKLLGEGAQDIW 77 Query: 86 ITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLL 121 ++ + L IL +I K+ + +D S+ R L+ Sbjct: 78 VSTFHSLCVRILRRDIEKLGYNRAFTIADTSEQRTLM 114 >gi|212703125|ref|ZP_03311253.1| hypothetical protein DESPIG_01164 [Desulfovibrio piger ATCC 29098] gi|212673391|gb|EEB33874.1| hypothetical protein DESPIG_01164 [Desulfovibrio piger ATCC 29098] Length = 963 Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM 78 T+ +Q + + V A G+GKT LV+R++ L+ P LL T T+ AA E+ Sbjct: 6 TQQQQAVINHDEGPVLVIAGPGAGKTFTLVERIVHLVAHKGIQPEQLLVATFTEKAANEL 65 Query: 79 SHRV 82 + R+ Sbjct: 66 TSRI 69 >gi|13638521|sp|P53528|UVRD_MYCLE RecName: Full=Probable DNA helicase II homolog Length = 714 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEM 78 + E +LA P V A AG+GKT + R+ L+ A H +T +L +T T+ AAAEM Sbjct: 16 QREAVLA--PRGPVCVLAGAGTGKTRTITHRIAHLVGAG-HVATGQVLAVTFTQRAAAEM 72 Query: 79 SHRVLEIITAWSHLSD 94 R+ + A +SD Sbjct: 73 RSRLRALGAAVQAVSD 88 >gi|312870522|ref|ZP_07730641.1| ATP-dependent DNA helicase PcrA [Lactobacillus oris PB013-T2-3] gi|311093984|gb|EFQ52309.1| ATP-dependent DNA helicase PcrA [Lactobacillus oris PB013-T2-3] Length = 762 Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 11/97 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI--------- 85 V A AGSGKT +L RV L+ P +L +T T AA EM RV ++ Sbjct: 28 VMAGAGSGKTRVLTHRVAYLIEEKGVLPWNILAITFTNKAAKEMQERVGKLLGEGAQDIW 87 Query: 86 ITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLL 121 ++ + L IL +I K+ + +D S+ R L+ Sbjct: 88 VSTFHSLCVRILRRDIEKLGYNRAFTIADTSEQRTLM 124 >gi|311103603|ref|YP_003976456.1| ATP-dependent DNA helicase Rep [Achromobacter xylosoxidans A8] gi|310758292|gb|ADP13741.1| ATP-dependent DNA helicase Rep [Achromobacter xylosoxidans A8] Length = 677 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ LL + ++ LT T AA EM RV ++ Sbjct: 18 VLAGAGSGKTRVITQKIAYLLRECGYMGRNVVALTFTNKAAREMDERVKTLV 69 >gi|260435507|ref|ZP_05789477.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 8109] gi|260413381|gb|EEX06677.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 8109] Length = 794 Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 20/145 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 V A AGSGKT L R+ L+ + P+ +L +T T AA EM R LE++ L+ Sbjct: 24 VVAGAGSGKTRALTHRIAHLIGEHGVDPAQILAVTFTNKAAREMKER-LELL-----LAQ 77 Query: 95 EILSAEITKIQGKKPN-KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA-- 151 ++ ++ + P + S++R E L + T HA A M ++ ++ Sbjct: 78 KLAQSQYGQPWSTLPAVEQRQSRSR----IYREVTKELWIGTFHALF-ARMLRYDIDKFQ 132 Query: 152 -----NITSHFAIADEEQSKKLIEE 171 T F+I DE ++ L++E Sbjct: 133 DSEGLTWTKQFSIYDEADAQSLVKE 157 >gi|239817530|ref|YP_002946440.1| exodeoxyribonuclease V, subunit beta [Variovorax paradoxus S110] gi|239804107|gb|ACS21174.1| exodeoxyribonuclease V, beta subunit [Variovorax paradoxus S110] Length = 1263 Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 16/135 (11%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAH------------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + +RL+L + PS +L +T T+AA E+S Sbjct: 15 SRLIEASAGTGKTWTIAALYVRLVLGHGASDPDQGFGRPLIPSEILVMTFTRAATRELSD 74 Query: 81 RV----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 R+ L+ + S + +T++ S + A L E+ V TI Sbjct: 75 RIRARLLDAARCFRGESPAAGDSLMTELLASYAPGSARTHAAWRLAMAAESMDDAAVHTI 134 Query: 137 HAFCEAIMQQFPLEA 151 A+C+ ++++ ++ Sbjct: 135 DAWCQRMLREHAFDS 149 >gi|331266303|ref|YP_004325933.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis Uo5] gi|326682975|emb|CBZ00592.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis Uo5] Length = 763 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 + A AGSGKT +L R+ L+ +P +L +T T AA EM R Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKER 71 >gi|270292792|ref|ZP_06199003.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M143] gi|270278771|gb|EFA24617.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M143] Length = 763 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 + A AGSGKT +L R+ L+ +P +L +T T AA EM R Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKER 71 >gi|126434064|ref|YP_001069755.1| UvrD/REP helicase [Mycobacterium sp. JLS] gi|126233864|gb|ABN97264.1| ATP-dependent DNA helicase, Rep family [Mycobacterium sp. JLS] Length = 707 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 + + + E +LA P V A AG+GKT + +R+ L+ A P +L +T T AA Sbjct: 20 LDEEQREAVLA--PRGPVCVLAGAGTGKTRTITRRIAHLVAAGHVAPGQVLAVTFTSRAA 77 Query: 76 AEMSHRV 82 EM R+ Sbjct: 78 GEMRARL 84 >gi|119026245|ref|YP_910090.1| putative helicase IV [Bifidobacterium adolescentis ATCC 15703] gi|118765829|dbj|BAF40008.1| putative helicase IV [Bifidobacterium adolescentis ATCC 15703] Length = 690 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVL 83 V A AG+GKT ++ + LL A P +L L+ TKA+A +MS R++ Sbjct: 149 VLAGAGTGKTTTIIGYIAWLLATKRAAPEEILVLSFTKASAGDMSQRIM 197 >gi|28900527|ref|NP_800182.1| DNA helicase IV [Vibrio parahaemolyticus RIMD 2210633] gi|260365408|ref|ZP_05777945.1| UvrD/REP helicase domain protein [Vibrio parahaemolyticus K5030] gi|260877474|ref|ZP_05889829.1| DNA helicase IV [Vibrio parahaemolyticus AN-5034] gi|260894855|ref|ZP_05903351.1| DNA helicase IV [Vibrio parahaemolyticus Peru-466] gi|28808907|dbj|BAC62015.1| helicase IV [Vibrio parahaemolyticus RIMD 2210633] gi|308085316|gb|EFO35011.1| DNA helicase IV [Vibrio parahaemolyticus Peru-466] gi|308090545|gb|EFO40240.1| DNA helicase IV [Vibrio parahaemolyticus AN-5034] gi|308114411|gb|EFO51951.1| UvrD/REP helicase domain protein [Vibrio parahaemolyticus K5030] Length = 689 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L RV LL ++ A LL L + AA EM R+++ + Sbjct: 217 VLAGAGSGKTSVLTARVAYLLQSHQAQAEELLMLAFGRDAAKEMKERLVDKV 268 >gi|237714589|ref|ZP_04545070.1| ATP-dependent DNA helicase [Bacteroides sp. D1] gi|262406455|ref|ZP_06083004.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_22] gi|294643703|ref|ZP_06721503.1| putative ATP-dependent DNA helicase PcrA [Bacteroides ovatus SD CC 2a] gi|229445358|gb|EEO51149.1| ATP-dependent DNA helicase [Bacteroides sp. D1] gi|262355158|gb|EEZ04249.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_22] gi|292640941|gb|EFF59159.1| putative ATP-dependent DNA helicase PcrA [Bacteroides ovatus SD CC 2a] Length = 792 Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 51/141 (36%), Gaps = 39/141 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 V A AGSGKT +L ++ LL +P +L LT T AA EM R+ Sbjct: 26 VIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFTNKAAREMKERI----------- 74 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + M +AR+L + T H+ I++ Sbjct: 75 ---------------ARQVGMERARYLWMG-----------TFHSIFSRILRAEAQYIGF 108 Query: 154 TSHFAIADEEQSKKLIEEAKK 174 TS F I D SK L+ K Sbjct: 109 TSQFTIYDTADSKSLLRSIIK 129 >gi|89098260|ref|ZP_01171145.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus sp. NRRL B-14911] gi|89087117|gb|EAR66233.1| ATP-dependent DNA helicase, UvrD/REP family protein [Bacillus sp. NRRL B-14911] Length = 686 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI 85 + AGSGKT +L R+ ++ + PS +L +T+TK A+ EM R+ I Sbjct: 63 SGAGSGKTTVLTCRIGYMIHSREISPSNILLVTYTKKASVEMIERLARI 111 >gi|294085888|ref|YP_003552648.1| DNA helicase II [Candidatus Puniceispirillum marinum IMCC1322] gi|292665463|gb|ADE40564.1| DNA helicase II [Candidatus Puniceispirillum marinum IMCC1322] Length = 743 Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V + AG+GKT +L R+ L+ + A P +L +T T AA EM R+ +++ Sbjct: 34 VLSGAGTGKTRVLTSRLAELVASGTAKPWNILAVTFTNKAAREMKSRIGDMV 85 >gi|240948326|ref|ZP_04752712.1| ATP-dependent DNA helicase [Actinobacillus minor NM305] gi|240297365|gb|EER47906.1| ATP-dependent DNA helicase [Actinobacillus minor NM305] Length = 672 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 20 VLAGAGSGKTRVIINKIAHLIAYCGYSPKQIAAVTFTNKAAREMRERV 67 >gi|33598621|ref|NP_886264.1| ATP-dependent DNA helicase [Bordetella parapertussis 12822] gi|33574750|emb|CAE39409.1| ATP-dependent DNA helicase [Bordetella parapertussis] Length = 661 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 38/135 (28%) Query: 38 ANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT ++ Q++ LL + ++ LT T AA EM+ RV ++ D Sbjct: 3 AGAGSGKTRVITQKMAYLLRECGYMGRNIVALTFTNKAAREMAERVKTLV-------DPK 55 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 L+ GL + T HA ++++ A + Sbjct: 56 LAK------------------------------GLTISTFHALGVRLLREEAAHAGLKPQ 85 Query: 157 FAIADEEQSKKLIEE 171 F+I D + + +I+E Sbjct: 86 FSILDADDAMSIIQE 100 >gi|15827263|ref|NP_301526.1| putative ATP-dependent DNA helicase [Mycobacterium leprae TN] gi|221229741|ref|YP_002503157.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923] gi|13092812|emb|CAC30146.1| putative ATP-dependent DNA helicase [Mycobacterium leprae] gi|219932848|emb|CAR70731.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923] Length = 717 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 5/76 (6%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--LLCLTHTKAAAAEM 78 + E +LA P V A AG+GKT + R+ L+ A H +T +L +T T+ AAAEM Sbjct: 19 QREAVLA--PRGPVCVLAGAGTGKTRTITHRIAHLVGAG-HVATGQVLAVTFTQRAAAEM 75 Query: 79 SHRVLEIITAWSHLSD 94 R+ + A +SD Sbjct: 76 RSRLRALGAAVQAVSD 91 >gi|260753941|ref|YP_003226834.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553304|gb|ACV76250.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 1047 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86 V A GSGKT +L QR+ L+ A P+ L LT T+ A E+ RV +++ Sbjct: 496 VLAGPGSGKTKMLTQRIAHLIQEKAIPAEKCLLLTFTRRATDELKARVKQLL 547 >gi|320530550|ref|ZP_08031607.1| glycosyltransferase, group 2 family protein [Selenomonas artemidis F0399] gi|320137223|gb|EFW29148.1| glycosyltransferase, group 2 family protein [Selenomonas artemidis F0399] Length = 714 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 5/61 (8%) Query: 158 AIADEEQSKKLIEEAKKS----TLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDII 212 ++ADEE+ + L+ E K++ T I + ++ LKK+ +LE + NDE +E L+SD Sbjct: 400 SVADEEELRALLRERKETRPILTYGIITYNRSKYLKKSLKSVLEQVGNDELVEVLVSDNC 459 Query: 213 S 213 S Sbjct: 460 S 460 >gi|260577890|ref|ZP_05845821.1| ATP-dependent DNA helicase II [Corynebacterium jeikeium ATCC 43734] gi|258603984|gb|EEW17230.1| ATP-dependent DNA helicase II [Corynebacterium jeikeium ATCC 43734] Length = 1205 Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRV 82 ++ + P + V A AG+GKT + R + ++AN A P +L LT T+ AAAE+ R+ Sbjct: 30 VIQAGPFGNFLVVAGAGAGKTETMAARAV-WMVANGYARPEQILGLTFTRKAAAELGERI 88 >gi|229526775|ref|ZP_04416179.1| DNA helicase IV [Vibrio cholerae bv. albensis VL426] gi|229336933|gb|EEO01951.1| DNA helicase IV [Vibrio cholerae bv. albensis VL426] Length = 699 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L RV LL ++ A P +L + + AA EM+ R+ Sbjct: 229 VLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAERL 276 >gi|168483162|ref|ZP_02708114.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC1873-00] gi|172043466|gb|EDT51512.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC1873-00] Length = 763 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 S + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 22 SLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|254225192|ref|ZP_04918805.1| helicase IV [Vibrio cholerae V51] gi|125622291|gb|EAZ50612.1| helicase IV [Vibrio cholerae V51] Length = 699 Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L RV LL ++ A P +L + + AA EM+ R+ Sbjct: 229 VLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAERL 276 >gi|312880761|ref|ZP_07740561.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260] gi|310784052|gb|EFQ24450.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260] Length = 1200 Score = 36.6 bits (83), Expect = 3.5, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 V A AG+GKTH L R LL ++ +L LT T+ AA EM R+ + W Sbjct: 37 VQAGAGTGKTHTLSSRFAWLLASDPTCRVEQILTLTFTEKAAREMRDRIRCRLLQWLEAE 96 Query: 94 DEIL 97 E L Sbjct: 97 PEKL 100 >gi|283457706|ref|YP_003362292.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18] gi|283133707|dbj|BAI64472.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18] Length = 1279 Score = 36.6 bits (83), Expect = 3.5, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 9/72 (12%) Query: 41 GSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM-------SHRVLEI--ITAWSH 91 G+GKTH L +R LR L P+ LL L T+ AA M S R L + AW+ Sbjct: 11 GTGKTHHLTERALRYLADGNDPARLLILAPTRTAATRMRDTIAASSDRSLSVAPTRAWAA 70 Query: 92 LSDEILSAEITK 103 + ++L T+ Sbjct: 71 YAFDLLKRAQTR 82 >gi|153800763|ref|ZP_01955349.1| helicase IV [Vibrio cholerae MZO-3] gi|124123738|gb|EAY42481.1| helicase IV [Vibrio cholerae MZO-3] Length = 699 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L RV LL ++ A P +L + + AA EM+ R+ Sbjct: 229 VLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAERL 276 >gi|37680798|ref|NP_935407.1| ATP-dependent exoDNAse beta subunit [Vibrio vulnificus YJ016] gi|37199547|dbj|BAC95378.1| ATP-dependent exoDNAse beta subunit [Vibrio vulnificus YJ016] Length = 1221 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 28/153 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT + LRLLL + T +L +T T+AA E+ R+ Sbjct: 38 IEASAGTGKTFTIAGLYLRLLLGHGSEETRHQVPLTVDQILVVTFTEAATGELRDRIR-- 95 Query: 86 ITAWSHLSDEILSAEITKIQGKKP-------NKSDMSKARHLLITILETPGGLKVQTIHA 138 + + D L+ + + + P + D +A +L+ V TIH Sbjct: 96 ----ARIHDARLA--FARGESQDPVIEPLLRDFPDHKQAAAILLQAERQMDEAAVFTIHG 149 Query: 139 FCEAIMQQFPLEAN--ITSHFAIADEEQSKKLI 169 FC+ ++ Q E+ + F + DE Q K + Sbjct: 150 FCQRMLTQNAFESGSRFNNEF-VTDESQLKAQV 181 >gi|121585589|ref|ZP_01675385.1| helicase IV [Vibrio cholerae 2740-80] gi|121725960|ref|ZP_01679260.1| helicase IV [Vibrio cholerae V52] gi|147671874|ref|YP_001215495.1| DNA helicase IV [Vibrio cholerae O395] gi|153211888|ref|ZP_01947735.1| helicase IV [Vibrio cholerae 1587] gi|153818597|ref|ZP_01971264.1| helicase IV [Vibrio cholerae NCTC 8457] gi|153820788|ref|ZP_01973455.1| helicase IV [Vibrio cholerae B33] gi|153824514|ref|ZP_01977181.1| helicase IV [Vibrio cholerae MZO-2] gi|153829185|ref|ZP_01981852.1| helicase IV [Vibrio cholerae 623-39] gi|227812284|ref|YP_002812294.1| helicase IV [Vibrio cholerae M66-2] gi|229510018|ref|ZP_04399498.1| DNA helicase IV [Vibrio cholerae B33] gi|229514169|ref|ZP_04403630.1| DNA helicase IV [Vibrio cholerae TMA 21] gi|229516421|ref|ZP_04405868.1| DNA helicase IV [Vibrio cholerae RC9] gi|229522282|ref|ZP_04411698.1| DNA helicase IV [Vibrio cholerae TM 11079-80] gi|229528406|ref|ZP_04417797.1| DNA helicase IV [Vibrio cholerae 12129(1)] gi|229605656|ref|YP_002876360.1| DNA helicase IV [Vibrio cholerae MJ-1236] gi|254849875|ref|ZP_05239225.1| helicase IV [Vibrio cholerae MO10] gi|255746520|ref|ZP_05420467.1| DNA helicase IV [Vibrio cholera CIRS 101] gi|262158892|ref|ZP_06030005.1| DNA helicase IV [Vibrio cholerae INDRE 91/1] gi|262168561|ref|ZP_06036257.1| DNA helicase IV [Vibrio cholerae RC27] gi|298499514|ref|ZP_07009320.1| helicase IV [Vibrio cholerae MAK 757] gi|9658137|gb|AAF96616.1| helicase IV [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121550206|gb|EAX60220.1| helicase IV [Vibrio cholerae 2740-80] gi|121631725|gb|EAX64093.1| helicase IV [Vibrio cholerae V52] gi|124116964|gb|EAY35784.1| helicase IV [Vibrio cholerae 1587] gi|126510880|gb|EAZ73474.1| helicase IV [Vibrio cholerae NCTC 8457] gi|126521831|gb|EAZ79054.1| helicase IV [Vibrio cholerae B33] gi|146314257|gb|ABQ18797.1| helicase IV [Vibrio cholerae O395] gi|148875298|gb|EDL73433.1| helicase IV [Vibrio cholerae 623-39] gi|149742068|gb|EDM56097.1| helicase IV [Vibrio cholerae MZO-2] gi|227011426|gb|ACP07637.1| helicase IV [Vibrio cholerae M66-2] gi|227015220|gb|ACP11429.1| helicase IV [Vibrio cholerae O395] gi|229334768|gb|EEO00254.1| DNA helicase IV [Vibrio cholerae 12129(1)] gi|229340267|gb|EEO05273.1| DNA helicase IV [Vibrio cholerae TM 11079-80] gi|229346302|gb|EEO11273.1| DNA helicase IV [Vibrio cholerae RC9] gi|229348149|gb|EEO13107.1| DNA helicase IV [Vibrio cholerae TMA 21] gi|229352463|gb|EEO17403.1| DNA helicase IV [Vibrio cholerae B33] gi|229372142|gb|ACQ62564.1| DNA helicase IV [Vibrio cholerae MJ-1236] gi|254845580|gb|EET23994.1| helicase IV [Vibrio cholerae MO10] gi|255736274|gb|EET91672.1| DNA helicase IV [Vibrio cholera CIRS 101] gi|262023090|gb|EEY41795.1| DNA helicase IV [Vibrio cholerae RC27] gi|262029465|gb|EEY48116.1| DNA helicase IV [Vibrio cholerae INDRE 91/1] gi|297541495|gb|EFH77546.1| helicase IV [Vibrio cholerae MAK 757] gi|327485726|gb|AEA80132.1| DNA helicase IV [Vibrio cholerae LMA3894-4] Length = 699 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L RV LL ++ A P +L + + AA EM+ R+ Sbjct: 229 VLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAERL 276 >gi|293603085|ref|ZP_06685519.1| ATP-dependent DNA helicase Rep [Achromobacter piechaudii ATCC 43553] gi|292818479|gb|EFF77526.1| ATP-dependent DNA helicase Rep [Achromobacter piechaudii ATCC 43553] Length = 687 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ LL + ++ LT T AA EM RV ++ Sbjct: 28 VLAGAGSGKTRVITQKIAYLLRECGYMGRNVVALTFTNKAAREMDERVKTLV 79 >gi|261212475|ref|ZP_05926760.1| DNA helicase IV [Vibrio sp. RC341] gi|260838406|gb|EEX65062.1| DNA helicase IV [Vibrio sp. RC341] Length = 687 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L RV LL ++ A P +L + + AA EM+ R+ Sbjct: 217 VLAGAGSGKTSVLTARVSYLLQSHLAKPEQILMVAFARDAAQEMAERL 264 >gi|161582042|ref|NP_233104.2| DNA helicase IV [Vibrio cholerae O1 biovar eltor str. N16961] Length = 687 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L RV LL ++ A P +L + + AA EM+ R+ Sbjct: 217 VLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAERL 264 >gi|85059009|ref|YP_454711.1| DNA helicase IV [Sodalis glossinidius str. 'morsitans'] gi|84779529|dbj|BAE74306.1| DNA helicase IV [Sodalis glossinidius str. 'morsitans'] Length = 684 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 RS V A AGSGKT +LV R LL A P +L L + AA EM R+ Sbjct: 210 RSLLVLAGAGSGKTSLLVARAGWLLRRKLATPEQILLLAFGRQAAQEMDERL 261 >gi|297580262|ref|ZP_06942189.1| helicase IV [Vibrio cholerae RC385] gi|297535908|gb|EFH74742.1| helicase IV [Vibrio cholerae RC385] Length = 699 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +L RV LL ++ A P +L + + AA EM+ R+ Sbjct: 229 VLAGAGSGKTSVLTARVSYLLQSHLAKPEQILLVAFARDAAQEMAERL 276 >gi|306825147|ref|ZP_07458489.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432583|gb|EFM35557.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 763 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 + A AGSGKT +L R+ L+ +P +L +T T AA EM R Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKER 71 >gi|306829578|ref|ZP_07462768.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis ATCC 6249] gi|304428664|gb|EFM31754.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis ATCC 6249] Length = 763 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 + A AGSGKT +L R+ L+ +P +L +T T AA EM R Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKER 71 >gi|208435346|ref|YP_002267012.1| DNA helicase II [Helicobacter pylori G27] gi|208433275|gb|ACI28146.1| DNA helicase II [Helicobacter pylori G27] Length = 682 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSH 80 ++++ AS + A AGSGKT L R+ L+ PS L LT T A+ EM Sbjct: 15 AQRIAASHVQGPLLILAGAGSGKTKTLTSRLAYLIGVCGVPSENTLTLTFTNKASKEMQE 74 Query: 81 RVLEII 86 R L+++ Sbjct: 75 RALKLL 80 >gi|15900955|ref|NP_345559.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae TIGR4] gi|111657604|ref|ZP_01408340.1| hypothetical protein SpneT_02001214 [Streptococcus pneumoniae TIGR4] gi|14972562|gb|AAK75199.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae TIGR4] Length = 763 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|317404550|gb|EFV84957.1| ATP-dependent DNA helicase [Achromobacter xylosoxidans C54] Length = 687 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ LL + ++ LT T AA EM RV ++ Sbjct: 28 VLAGAGSGKTRVITQKIAYLLRECGYMGRNVVALTFTNKAAREMDERVRTLV 79 >gi|293365526|ref|ZP_06612235.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037] gi|291315894|gb|EFE56338.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037] Length = 763 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 + A AGSGKT +L R+ L+ +P +L +T T AA EM R Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKER 71 >gi|237752329|ref|ZP_04582809.1| helicase [Helicobacter winghamensis ATCC BAA-430] gi|229375818|gb|EEO25909.1| helicase [Helicobacter winghamensis ATCC BAA-430] Length = 897 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 8/113 (7%) Query: 57 LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS---DEILSAEITKIQG--KKPN- 110 + A PS +L LT TK AA EM R+L + + D I E+ I ++P+ Sbjct: 1 MQGAKPSNILTLTFTKKAAKEMEERILHNLKELYYNKNNRDYIKEFELISINKTLQEPDW 60 Query: 111 KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE 163 K+ +K + L LK+ TI AF + I++ F + F + +E+ Sbjct: 61 KNIENKINSVYHEFLRQD--LKITTIDAFFQKILKNFCWYVGVEYDFELQEED 111 >gi|56552380|ref|YP_163219.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ZM4] gi|56543954|gb|AAV90108.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ZM4] Length = 1047 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86 V A GSGKT +L QR+ L+ A P+ L LT T+ A E+ RV +++ Sbjct: 496 VLAGPGSGKTKMLTQRIAHLIQEKAIPAEKCLLLTFTRRATDELKARVKQLL 547 >gi|262369123|ref|ZP_06062452.1| ATP-dependent DNA helicase [Acinetobacter johnsonii SH046] gi|262316801|gb|EEY97839.1| ATP-dependent DNA helicase [Acinetobacter johnsonii SH046] Length = 679 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%) Query: 14 IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHT 71 + L SQ +QL A T+ V A AGSGKT ++ +++ L+ P+ + +T T Sbjct: 1 MSLASQLNDKQLEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLVKHCGIPAYRITAMTFT 60 Query: 72 KAAAAEMSHRVLEIIT 87 AA EM RV ++++ Sbjct: 61 NKAAREMKERVTKLLS 76 >gi|149024889|ref|ZP_01836290.1| methionine aminopeptidase [Streptococcus pneumoniae SP23-BS72] gi|147929512|gb|EDK80506.1| methionine aminopeptidase [Streptococcus pneumoniae SP23-BS72] Length = 763 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|148241321|ref|YP_001226478.1| UvrD/REP helicase [Synechococcus sp. RCC307] gi|147849631|emb|CAK27125.1| UvrD/REP helicase [Synechococcus sp. RCC307] Length = 784 Score = 36.2 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 V A AGSGKT L R+ L+ + A P+ +L +T T AA EM R Sbjct: 24 VVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFTNKAAREMKER 70 >gi|149003797|ref|ZP_01828629.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP14-BS69] gi|225861053|ref|YP_002742562.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae Taiwan19F-14] gi|237650760|ref|ZP_04525012.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CCRI 1974] gi|237822347|ref|ZP_04598192.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CCRI 1974M2] gi|298230846|ref|ZP_06964527.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255795|ref|ZP_06979381.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502897|ref|YP_003724837.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae TCH8431/19A] gi|303254202|ref|ZP_07340314.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS455] gi|303259750|ref|ZP_07345725.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP-BS293] gi|303262925|ref|ZP_07348860.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP14-BS292] gi|303264888|ref|ZP_07350804.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS397] gi|303266868|ref|ZP_07352746.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS457] gi|303268905|ref|ZP_07354690.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS458] gi|147758243|gb|EDK65245.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP14-BS69] gi|225727044|gb|ACO22895.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae Taiwan19F-14] gi|298238492|gb|ADI69623.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae TCH8431/19A] gi|301802021|emb|CBW34750.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae INV200] gi|302598873|gb|EFL65907.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS455] gi|302635902|gb|EFL66402.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP14-BS292] gi|302638955|gb|EFL69415.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP-BS293] gi|302641523|gb|EFL71885.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS458] gi|302643566|gb|EFL73835.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS457] gi|302645576|gb|EFL75807.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS397] gi|327389355|gb|EGE87700.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA04375] gi|332075421|gb|EGI85890.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA41301] Length = 763 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|124088621|ref|XP_001347170.1| Steroid dehydrogenase [Paramecium tetraurelia strain d4-2] gi|145474181|ref|XP_001423113.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|50057559|emb|CAH03543.1| Steroid dehydrogenase, putative [Paramecium tetraurelia] gi|124390173|emb|CAK55715.1| unnamed protein product [Paramecium tetraurelia] Length = 292 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/78 (26%), Positives = 44/78 (56%), Gaps = 9/78 (11%) Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS---IMLDNNEELKKAFYE 194 +C+ + QQ N+ + +EE++KKLIEE K + + +++D N L++ F++ Sbjct: 54 GYCQVLAQQ-----NVNICMLVRNEEKAKKLIEELSKGSTSKFKIVVVDFNNSLEEGFFD 108 Query: 195 -ILEISNDEDIETLISDI 211 + + + DI LI+++ Sbjct: 109 RVYKQIENLDIGLLINNV 126 >gi|146277860|ref|YP_001168019.1| UvrD/REP helicase [Rhodobacter sphaeroides ATCC 17025] gi|145556101|gb|ABP70714.1| UvrD/REP helicase [Rhodobacter sphaeroides ATCC 17025] Length = 978 Score = 36.2 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 17/146 (11%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTH 70 +TI+ T ++L + V A AGSGKT ++ + L+ A P +L L Sbjct: 195 DTIESKPLTPEQRLSVVVDEDATLVLAGAGSGKTSVITAKAAYLVKAGIRKPEEILLLAF 254 Query: 71 TKAAAAEMSHRV--LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA----RHLLITI 124 K AA EMS RV + + I I ++G KP +D + R+L+ I Sbjct: 255 AKNAAEEMSERVEARSGVPISARTFHAIAYDIIGIVEGSKPALADHATDDLAFRNLIKQI 314 Query: 125 LETPGGLKVQTIHAFCE---AIMQQF 147 L+ +HA E AI+Q F Sbjct: 315 LK-------DLVHALSEVSTAIIQWF 333 >gi|291454017|ref|ZP_06593407.1| ATP-dependent DNA helicase [Streptomyces albus J1074] gi|291356966|gb|EFE83868.1| ATP-dependent DNA helicase [Streptomyces albus J1074] Length = 743 Score = 36.2 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 10/86 (11%) Query: 10 HSETIDLISQTKSEQLLASDPTRSA---------WVSANAGSGKTHILVQRVLRLLLANA 60 H+ + + ++ + L DP + A V A AG+GKT L R+ + N Sbjct: 22 HTPSFPRVPESADDVLAGLDPEQRAVATALHGPVCVLAGAGTGKTRALTHRIAYGVRTNR 81 Query: 61 -HPSTLLCLTHTKAAAAEMSHRVLEI 85 P+++L +T T AA EM R+ ++ Sbjct: 82 FQPTSVLAVTFTNRAAGEMRGRLRQL 107 >gi|15903039|ref|NP_358589.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae R6] gi|116515714|ref|YP_816449.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae D39] gi|15458610|gb|AAK99799.1| ATP-dependent DNA helicase [Streptococcus pneumoniae R6] gi|116076290|gb|ABJ54010.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae D39] Length = 763 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|322376782|ref|ZP_08051275.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M334] gi|321282589|gb|EFX59596.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M334] Length = 763 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEI 85 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYNL 75 >gi|322375316|ref|ZP_08049829.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C300] gi|321279579|gb|EFX56619.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C300] Length = 763 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 + A AGSGKT +L R+ L+ +P +L +T T AA EM R Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKER 71 >gi|320155533|ref|YP_004187912.1| exodeoxyribonuclease V subunit beta RecB [Vibrio vulnificus MO6-24/O] gi|319930845|gb|ADV85709.1| exodeoxyribonuclease V beta chain RecB [Vibrio vulnificus MO6-24/O] Length = 1206 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 28/153 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT + LRLLL + T +L +T T+AA E+ R+ Sbjct: 23 IEASAGTGKTFTIAGLYLRLLLGHGSEETRHQVPLTVDQILVVTFTEAATGELRDRIR-- 80 Query: 86 ITAWSHLSDEILSAEITKIQGKKP-------NKSDMSKARHLLITILETPGGLKVQTIHA 138 + + D L+ + + + P + D +A +L+ V TIH Sbjct: 81 ----ARIHDARLA--FARGESQDPVIEPLLRDFPDHKQAAAILLQAERQMDEAAVFTIHG 134 Query: 139 FCEAIMQQFPLEAN--ITSHFAIADEEQSKKLI 169 FC+ ++ Q E+ + F + DE Q K + Sbjct: 135 FCQRMLTQNAFESGSRFNNEF-VTDESQLKAQV 166 >gi|301800058|emb|CBW32653.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae OXC141] Length = 763 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|289168033|ref|YP_003446302.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis B6] gi|288907600|emb|CBJ22437.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis B6] Length = 763 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|225858900|ref|YP_002740410.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 70585] gi|225721717|gb|ACO17571.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 70585] Length = 763 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|221231829|ref|YP_002510981.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae ATCC 700669] gi|220674289|emb|CAR68831.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae ATCC 700669] Length = 763 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|169832763|ref|YP_001694512.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae Hungary19A-6] gi|168995265|gb|ACA35877.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae Hungary19A-6] Length = 763 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|163815569|ref|ZP_02206942.1| hypothetical protein COPEUT_01743 [Coprococcus eutactus ATCC 27759] gi|158449206|gb|EDP26201.1| hypothetical protein COPEUT_01743 [Coprococcus eutactus ATCC 27759] Length = 789 Score = 36.2 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 57/158 (36%), Gaps = 43/158 (27%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT ++ RV L+ +P +L +T T AA EM RV I+ Sbjct: 37 ILAGAGSGKTRVITHRVAYLMDHEGVNPLNILAITFTNKAAREMRDRVDLIVG------- 89 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E + V T H+ C I++++ + Sbjct: 90 -------------------------------EGADRVWVSTFHSLCVRILRRYADKIGYE 118 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 +F I D + K + KS L +D +K F Sbjct: 119 KNFDIYDSDDQKSTV----KSILKDFQIDPKRYPEKMF 152 >gi|322387882|ref|ZP_08061489.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis ATCC 700779] gi|321141155|gb|EFX36653.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis ATCC 700779] Length = 762 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 + A AGSGKT +L R+ L+ +P +L +T T AA EM R Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKER 71 >gi|194397544|ref|YP_002037718.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae G54] gi|194357211|gb|ACF55659.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae G54] Length = 763 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|148998353|ref|ZP_01825795.1| methionine aminopeptidase [Streptococcus pneumoniae SP11-BS70] gi|307067730|ref|YP_003876696.1| superfamily I DNA and RNA helicase [Streptococcus pneumoniae AP200] gi|147755750|gb|EDK62795.1| methionine aminopeptidase [Streptococcus pneumoniae SP11-BS70] gi|306409267|gb|ADM84694.1| Superfamily I DNA and RNA helicase [Streptococcus pneumoniae AP200] Length = 763 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|319792357|ref|YP_004153997.1| uvrd/rep helicase [Variovorax paradoxus EPS] gi|315594820|gb|ADU35886.1| UvrD/REP helicase [Variovorax paradoxus EPS] Length = 808 Score = 36.2 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 + L+ EQ A + P +A + A AGSGKT +L R+ LL +L +T T Sbjct: 15 LPLLQNLNPEQRAAVTLPQGNALILAGAGSGKTRVLTTRIAWLLQTGQVSAGGILAVTFT 74 Query: 72 KAAAAEMSHRVLEII 86 AA EM R+ I+ Sbjct: 75 NKAAKEMMTRLTAIL 89 >gi|301794204|emb|CBW36623.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae INV104] Length = 763 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|168494521|ref|ZP_02718664.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC3059-06] gi|225854583|ref|YP_002736095.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae JJA] gi|183575566|gb|EDT96094.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC3059-06] gi|225724045|gb|ACO19898.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae JJA] Length = 763 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|148989130|ref|ZP_01820520.1| methionine aminopeptidase [Streptococcus pneumoniae SP6-BS73] gi|147925353|gb|EDK76431.1| methionine aminopeptidase [Streptococcus pneumoniae SP6-BS73] Length = 763 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|149006240|ref|ZP_01829952.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP18-BS74] gi|307127381|ref|YP_003879412.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 670-6B] gi|147762017|gb|EDK68979.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP18-BS74] gi|306484443|gb|ADM91312.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 670-6B] gi|332075042|gb|EGI85513.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17545] Length = 763 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|71892050|ref|YP_277780.1| exonuclease V [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796156|gb|AAZ40907.1| exonuclease V [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 1187 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 26/145 (17%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST---------LLCLTHTKAAAAEMSHRV---- 82 + A+AG+GKT+ L+ +RLLL + S +L +T TK+A E+ HR+ Sbjct: 17 IEASAGTGKTYTLIIIYIRLLLCLGNRSDFSRPLTVKEILVVTFTKSAVRELRHRIRENI 76 Query: 83 ----LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 L+ + +SH + + S + +I + + +S+A + + TIH+ Sbjct: 77 HQFRLDCMRGYSH--NFLFSKLLLQIHNVELAINQLSEAE-------KKINQASIFTIHS 127 Query: 139 FCEAIMQQFPLEANITSHFAIADEE 163 FC+ I+ +E N+ + I D E Sbjct: 128 FCQNILNHNTIELNMLFNTNIVDNE 152 >gi|307703485|ref|ZP_07640427.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037] gi|307622892|gb|EFO01887.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037] Length = 739 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 + A AGSGKT +L R+ L+ +P +L +T T AA EM R Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKER 71 >gi|261866905|ref|YP_003254827.1| ATP-dependent DNA helicase Rep [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412237|gb|ACX81608.1| ATP-dependent DNA helicase Rep [Aggregatibacter actinomycetemcomitans D11S-1] Length = 671 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +++ ++ L+ + P + +T T AA EM RV + I Sbjct: 20 VLAGAGSGKTRVIINKIAHLIDKCGYFPKQIAAVTFTNKAAREMKERVAQSI 71 >gi|160884387|ref|ZP_02065390.1| hypothetical protein BACOVA_02365 [Bacteroides ovatus ATCC 8483] gi|156110126|gb|EDO11871.1| hypothetical protein BACOVA_02365 [Bacteroides ovatus ATCC 8483] Length = 792 Score = 36.2 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 51/141 (36%), Gaps = 39/141 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 V A AGSGKT +L ++ LL +P +L LT T AA EM R+ Sbjct: 26 VIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFTNKAAREMKERI----------- 74 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + M +AR+L + T H+ I++ Sbjct: 75 ---------------ARQVGMERARYLWMG-----------TFHSIFSRILRAEATFIGF 108 Query: 154 TSHFAIADEEQSKKLIEEAKK 174 TS F I D SK L+ K Sbjct: 109 TSQFTIYDTADSKSLLRSIIK 129 >gi|68536698|ref|YP_251403.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium K411] gi|68264297|emb|CAI37785.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium K411] Length = 1205 Score = 36.2 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 5/81 (6%) Query: 6 SFQEHSETIDLISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AH 61 S QE S+ + EQ ++ + P + V A AG+GKT + R + ++AN A Sbjct: 9 SPQELSQLMGQKFAPTDEQADVIQAGPFGNFLVVAGAGAGKTETMAARAV-WMVANGYAR 67 Query: 62 PSTLLCLTHTKAAAAEMSHRV 82 P +L LT T+ AAAE+ R+ Sbjct: 68 PEQILGLTFTRKAAAELGERI 88 >gi|168486496|ref|ZP_02711004.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC1087-00] gi|183570538|gb|EDT91066.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC1087-00] Length = 763 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|322391967|ref|ZP_08065431.1| ATP-dependent DNA helicase PcrA [Streptococcus peroris ATCC 700780] gi|321145193|gb|EFX40590.1| ATP-dependent DNA helicase PcrA [Streptococcus peroris ATCC 700780] Length = 763 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 + A AGSGKT +L R+ L+ +P +L +T T AA EM R Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKER 71 >gi|307708772|ref|ZP_07645234.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis NCTC 12261] gi|307615138|gb|EFN94349.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis NCTC 12261] Length = 763 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 + A AGSGKT +L R+ L+ +P +L +T T AA EM R Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKER 71 >gi|253991620|ref|YP_003042976.1| ATP-dependent DNA helicase Rep [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783070|emb|CAQ86235.1| Rep helicase, a single-stranded DNA dependent ATPase [Photorhabdus asymbiotica] Length = 675 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 42/172 (24%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 T V A AGSGKT ++ ++ L+ + P + +T T AA EM RV + + Sbjct: 15 TGPCLVLAGAGSGKTRVITNKIAHLIRICGYQPRHIAAVTFTNKAAREMKERVAQTL--- 71 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 G++ K GL + T H I+++ Sbjct: 72 ----------------GRQEAK------------------GLMISTFHTLGLEIIKREYK 97 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 + S+F++ DE+ L+ K A ++ ++ E L+K I ND Sbjct: 98 ALGMKSNFSLFDEQDQMALL----KDLTADLLEEDKELLQKLIASISNWKND 145 >gi|300766625|ref|ZP_07076542.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495725|gb|EFK30876.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 759 Score = 36.2 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L RV L+ +P +L +T T AA EM RV +++ Sbjct: 31 IMAGAGSGKTRVLTHRVAYLIEEQGVNPWNVLAITFTNKAAREMRERVGKLL 82 >gi|163854653|ref|YP_001628951.1| ATP-dependent DNA helicase [Bordetella petrii DSM 12804] gi|163258381|emb|CAP40680.1| ATP-dependent DNA helicase [Bordetella petrii] Length = 685 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ Q++ LL + ++ LT T AA EM RV ++ Sbjct: 28 VLAGAGSGKTRVITQKIAYLLRECGYMGRNVVALTFTNKAAREMDERVKTLV 79 >gi|148994163|ref|ZP_01823478.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP9-BS68] gi|168488930|ref|ZP_02713129.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP195] gi|147927406|gb|EDK78436.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP9-BS68] gi|183572486|gb|EDT93014.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP195] gi|332073447|gb|EGI83926.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17570] Length = 763 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|254556106|ref|YP_003062523.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum JDM1] gi|254045033|gb|ACT61826.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum JDM1] Length = 755 Score = 36.2 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L RV L+ +P +L +T T AA EM RV +++ Sbjct: 27 IMAGAGSGKTRVLTHRVAYLIEEQGVNPWNVLAITFTNKAAREMRERVGKLL 78 >gi|221145759|gb|ACL99766.1| UvrD-like protein [Plasmodium falciparum] Length = 693 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 17/130 (13%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 A GSGKT L R+++ ++ +++C+T T AA+++ ++++ I L D + Sbjct: 22 ACPGSGKTSTLTARIIKSIIE--EKQSIVCITFTNYAASDLKDKIMKKINC---LIDICV 76 Query: 98 SAEITKIQGKK---------PNKSDMS-KARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 +I + NK ++ K + +L T + TIH+FC I+ ++ Sbjct: 77 DNKINQKLFNNKNNKINFSLKNKCTLNNKMNKSIFKVLNTVTF--IGTIHSFCRYILYKY 134 Query: 148 PLEANITSHF 157 I + F Sbjct: 135 KGTFKILTDF 144 >gi|28377922|ref|NP_784814.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum WCFS1] gi|308180103|ref|YP_003924231.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270756|emb|CAD63661.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum WCFS1] gi|308045594|gb|ADN98137.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 755 Score = 36.2 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L RV L+ +P +L +T T AA EM RV +++ Sbjct: 27 IMAGAGSGKTRVLTHRVAYLIEEQGVNPWNVLAITFTNKAAREMRERVGKLL 78 >gi|307706682|ref|ZP_07643488.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK321] gi|307617926|gb|EFN97087.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK321] Length = 763 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 + A AGSGKT +L R+ L+ +P +L +T T AA EM R Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKER 71 >gi|224539034|ref|ZP_03679573.1| hypothetical protein BACCELL_03934 [Bacteroides cellulosilyticus DSM 14838] gi|224519362|gb|EEF88467.1| hypothetical protein BACCELL_03934 [Bacteroides cellulosilyticus DSM 14838] Length = 975 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 26/47 (55%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 A AGSGK+ L R+ RL+ P +++ T T+ AA + RV + Sbjct: 30 ACAGSGKSRTLAFRISRLIYEGVTPESIIAFTFTEKAAESIKRRVAD 76 >gi|325694248|gb|EGD36164.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK150] Length = 762 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 + A AGSGKT +L R+ L+ +P +L +T T AA EM R ++ T Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77 >gi|312142659|ref|YP_003994105.1| UvrD/REP helicase [Halanaerobium sp. 'sapolanicus'] gi|311903310|gb|ADQ13751.1| UvrD/REP helicase [Halanaerobium sp. 'sapolanicus'] Length = 1039 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 4/137 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS-D 94 + A+AG+GKT+ L L + ++ +T T+ A AE+ R++E + D Sbjct: 5 LKASAGTGKTYRLSLEYLNAVFEGTDFRNIVVMTFTRKATAEIRERIIEHLKNLKENGID 64 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ--FPLEAN 152 + E+ KI K + + + IL + + V TI +F I ++ P Sbjct: 65 SDVYEELKKISSLTGEKI-LLQVDSVFEEILSSKEKINVYTIDSFVNKIFKRSIAPYLGI 123 Query: 153 ITSHFAIADEEQSKKLI 169 T DEE ++K+ Sbjct: 124 KTYEVTDKDEESAEKVF 140 >gi|24379604|ref|NP_721559.1| ATP-dependent DNA helicase [Streptococcus mutans UA159] gi|24377553|gb|AAN58865.1|AE014954_4 ATP-dependent DNA helicase [Streptococcus mutans UA159] Length = 733 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 2 AGAGSGKTRVLTHRIAYLIDEKFINPWNILAITFTNKAAREMKERAFALNAA 53 >gi|15676683|ref|NP_273827.1| exodeoxyribonuclease V 135 KD polypeptide [Neisseria meningitidis MC58] gi|7226017|gb|AAF41198.1| exodeoxyribonuclease V 135 KD polypeptide [Neisseria meningitidis MC58] gi|316983777|gb|EFV62758.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis H44/76] gi|325140061|gb|EGC62590.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis CU385] gi|325200529|gb|ADY95984.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis H44/76] Length = 1204 Score = 36.2 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L + +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRGRLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKP----------NKSDMSKARHLLITILETPGG----L 131 + + L D+ LS I + ++ + R LI L+ G Sbjct: 81 SKGIAKLGDDTLSDGIAAYCAEHHEGDTFLPELLKQALQKEGRTRLIVRLKAAIGQFDNA 140 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + LI Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVEMTEEDGDRLLI 178 >gi|324990953|gb|EGC22888.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK353] Length = 762 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 + A AGSGKT +L R+ L+ +P +L +T T AA EM R ++ T Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77 >gi|315222686|ref|ZP_07864575.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus F0211] gi|315188372|gb|EFU22098.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus F0211] Length = 777 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 + A AGSGKT +L R+ L+ +P +L +T T AA EM R Sbjct: 42 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKER 88 >gi|168491981|ref|ZP_02716124.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC0288-04] gi|183573779|gb|EDT94307.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC0288-04] Length = 763 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|118602354|ref|YP_903569.1| UvrD/REP helicase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567293|gb|ABL02098.1| UvrD/REP helicase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 718 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMS 79 K Q + + ++A + A AGSGKT +L R+ L+ + +L +T T AA EM Sbjct: 13 KQCQSVTFNNEKNALILAGAGSGKTRVLTHRIAYLITQKDIRIDAILAVTFTNKAATEMR 72 Query: 80 HRV 82 R+ Sbjct: 73 ERL 75 >gi|325689990|gb|EGD31994.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK115] Length = 766 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 + A AGSGKT +L R+ L+ +P +L +T T AA EM R ++ T Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77 >gi|322514926|ref|ZP_08067941.1| ATP-dependent helicase PcrA [Actinobacillus ureae ATCC 25976] gi|322119114|gb|EFX91268.1| ATP-dependent helicase PcrA [Actinobacillus ureae ATCC 25976] Length = 672 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 20 VLAGAGSGKTRVIINKITHLIAHCGYSPKQIAAVTFTNKAAREMRERV 67 >gi|326423891|ref|NP_760677.2| exodeoxyribonuclease V subunit beta [Vibrio vulnificus CMCP6] gi|319999264|gb|AAO10204.2| exodeoxyribonuclease V, beta subunit [Vibrio vulnificus CMCP6] Length = 1221 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 28/150 (18%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT + LRLLL + T +L +T T+AA E+ R+ Sbjct: 38 IEASAGTGKTFTIAGLYLRLLLGHGSEETRHQVPLTVDQILVVTFTEAATGELRDRIR-- 95 Query: 86 ITAWSHLSDEILSAEITKIQGKKP-------NKSDMSKARHLLITILETPGGLKVQTIHA 138 + + D L+ + + + P + D +A +L+ V TIH Sbjct: 96 ----ARIHDARLA--FARGESQDPVIEPLLRDFPDHKQAAAILLQAERQMDEAAVFTIHG 149 Query: 139 FCEAIMQQFPLEAN--ITSHFAIADEEQSK 166 FC+ ++ Q E+ + F + DE Q K Sbjct: 150 FCQRMLTQNAFESGSRFNNEF-VTDESQLK 178 >gi|260174597|ref|ZP_05761009.1| ATP-dependent DNA helicase [Bacteroides sp. D2] gi|315922861|ref|ZP_07919101.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696736|gb|EFS33571.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 792 Score = 36.2 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 51/141 (36%), Gaps = 39/141 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 V A AGSGKT +L ++ LL +P +L LT T AA EM R+ Sbjct: 26 VIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFTNKAAREMKERI----------- 74 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + M +AR+L + T H+ I++ Sbjct: 75 ---------------ARQVGMERARYLWMG-----------TFHSIFSRILRAEATFIGF 108 Query: 154 TSHFAIADEEQSKKLIEEAKK 174 TS F I D SK L+ K Sbjct: 109 TSQFTIYDTADSKSLLRSIIK 129 >gi|168576188|ref|ZP_02722082.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae MLV-016] gi|183577923|gb|EDT98451.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae MLV-016] Length = 763 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 + A AGSGKT +L R+ L+ +P +L +T T AA EM R Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKER 71 >gi|262282913|ref|ZP_06060680.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. 2_1_36FAA] gi|262261165|gb|EEY79864.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. 2_1_36FAA] Length = 762 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 + A AGSGKT +L R+ L+ +P +L +T T AA EM R ++ T Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77 >gi|77920383|ref|YP_358198.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380] gi|77546466|gb|ABA90028.1| ATP-dependent DNA helicase PcrA [Pelobacter carbinolicus DSM 2380] Length = 737 Score = 36.2 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT L R+ L+ P +L +T T AAAEM R+ ++ Sbjct: 25 ILAGAGSGKTRTLTHRIAYLIQQQQVEPWQVLAVTFTNKAAAEMRERLQSLV 76 >gi|87302003|ref|ZP_01084837.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 5701] gi|87283571|gb|EAQ75526.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 5701] Length = 797 Score = 36.2 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT L R+ L+ + P LL +T T AA EM R LE++ A Sbjct: 24 VVAGAGSGKTRALTHRIAHLIGHHGVDPHQLLAVTFTNKAAREMKER-LELLLA 76 >gi|302918178|ref|XP_003052603.1| hypothetical protein NECHADRAFT_36498 [Nectria haematococca mpVI 77-13-4] gi|256733543|gb|EEU46890.1| hypothetical protein NECHADRAFT_36498 [Nectria haematococca mpVI 77-13-4] Length = 1057 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A GSGKTH L RV+ L+ PS ++ T T AA EM R+ Sbjct: 33 AGPGSGKTHTLTSRVVWLVQRVGYRPSDVIVATFTVKAAREMKDRI 78 >gi|307704751|ref|ZP_07641647.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK597] gi|307621660|gb|EFO00701.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK597] Length = 763 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|225856731|ref|YP_002738242.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae P1031] gi|225724965|gb|ACO20817.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae P1031] Length = 763 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|182677780|ref|YP_001831926.1| UvrD/REP helicase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633663|gb|ACB94437.1| UvrD/REP helicase [Beijerinckia indica subsp. indica ATCC 9039] Length = 800 Score = 36.2 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT +L R+ +L A +L +T T AA EM RV ++ Sbjct: 62 VLAGAGTGKTRVLTTRIAHILATGRARAHEILAVTFTNKAAREMKERVAALV 113 >gi|15646087|ref|NP_208269.1| DNA helicase II (uvrD) [Helicobacter pylori 26695] gi|2314653|gb|AAD08516.1| DNA helicase II (uvrD) [Helicobacter pylori 26695] Length = 682 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSH 80 ++++ AS + A AGSGKT L R+ L+ PS L LT T A+ EM Sbjct: 15 AQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGVCGVPSENTLTLTFTNKASKEMQE 74 Query: 81 RVLEII 86 R L+++ Sbjct: 75 RALKLL 80 >gi|327489339|gb|EGF21132.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1058] Length = 762 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 + A AGSGKT +L R+ L+ +P +L +T T AA EM R ++ T Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77 >gi|324993214|gb|EGC25134.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK405] gi|327461484|gb|EGF07815.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1] Length = 762 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 + A AGSGKT +L R+ L+ +P +L +T T AA EM R ++ T Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77 >gi|255323798|ref|ZP_05364924.1| ATP-dependent DNA helicase [Corynebacterium tuberculostearicum SK141] gi|255298978|gb|EET78269.1| ATP-dependent DNA helicase [Corynebacterium tuberculostearicum SK141] Length = 1059 Score = 36.2 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAE 77 T+ + + P V A AG+GKT + RV+ L+AN + P +L LT T+ AA + Sbjct: 22 TEEQAHVIEGPFSPKLVVAGAGAGKTETMASRVV-YLVANGYVRPEQVLGLTFTRKAAQQ 80 Query: 78 MSHRV 82 + R+ Sbjct: 81 LEQRI 85 >gi|157151050|ref|YP_001450617.1| ATP-dependent DNA helicase PcrA [Streptococcus gordonii str. Challis substr. CH1] gi|157075844|gb|ABV10527.1| ATP-dependent DNA helicase PcrA [Streptococcus gordonii str. Challis substr. CH1] Length = 762 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 + A AGSGKT +L R+ L+ +P +L +T T AA EM R ++ T Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77 >gi|324995484|gb|EGC27396.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK678] Length = 762 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 + A AGSGKT +L R+ L+ +P +L +T T AA EM R ++ T Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77 >gi|309800338|ref|ZP_07694507.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis SK1302] gi|308116035|gb|EFO53542.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis SK1302] Length = 149 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 38/163 (23%), Positives = 57/163 (34%), Gaps = 48/163 (29%) Query: 36 VSANAGSGKTHILVQRVLRLL---LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 + A AGSGKT +L R+ L+ L N P +L +T T AA EM R Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVN--PWNILAITFTNKAAREMKERAY--------- 73 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 G P D + T H+ C I+++ Sbjct: 74 -------------GLNPATQD-----------------CLIATFHSMCVRILRRDADHIG 103 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +F I D + + L+ K L + LD + F+E+ Sbjct: 104 YNRNFTIVDPGEQRTLM----KRILKQLNLDPKNGMNGLFWEL 142 >gi|299146105|ref|ZP_07039173.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_23] gi|298516596|gb|EFI40477.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_23] Length = 792 Score = 36.2 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 51/141 (36%), Gaps = 39/141 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 V A AGSGKT +L ++ LL +P +L LT T AA EM R+ Sbjct: 26 VIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFTNKAAREMKERI----------- 74 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + M +AR+L + T H+ I++ Sbjct: 75 ---------------ARQVGMERARYLWMG-----------TFHSIFSRILRAEATFIGF 108 Query: 154 TSHFAIADEEQSKKLIEEAKK 174 TS F I D SK L+ K Sbjct: 109 TSQFTIYDTADSKSLLRSIIK 129 >gi|125717696|ref|YP_001034829.1| ATP-dependent DNA helicase, putative [Streptococcus sanguinis SK36] gi|125497613|gb|ABN44279.1| ATP-dependent DNA helicase, putative [Streptococcus sanguinis SK36] Length = 762 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 + A AGSGKT +L R+ L+ +P +L +T T AA EM R ++ T Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77 >gi|327469639|gb|EGF15108.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK330] Length = 762 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 + A AGSGKT +L R+ L+ +P +L +T T AA EM R ++ T Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77 >gi|289667974|ref|ZP_06489049.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 658 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++V+++ L+ +P+ + +T T +A EM RV + I Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMRERVAKRIRG 74 >gi|115377513|ref|ZP_01464713.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1] gi|310820075|ref|YP_003952433.1| ATP-dependent DNA helicase, uvrd/rep family [Stigmatella aurantiaca DW4/3-1] gi|115365453|gb|EAU64488.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1] gi|309393147|gb|ADO70606.1| ATP-dependent DNA helicase, UvrD/REP family [Stigmatella aurantiaca DW4/3-1] Length = 688 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 7/55 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-----TLLCLTHTKAAAAEMSHRVLEI 85 V A AGSGKT ++ R++ +L N P +L +T T AA EM R++++ Sbjct: 23 VLAGAGSGKTRVITHRIVHIL--NERPGGALARNILAVTFTNKAATEMKERLVKM 75 >gi|325066921|ref|ZP_08125594.1| UvrD/REP helicase [Actinomyces oris K20] Length = 84 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78 V A AGSGKT + QRV+ L+ P +L LT T+ A AE+ Sbjct: 40 VVAGAGSGKTATMAQRVVYLVATGQVRPDQILGLTFTRKATAEL 83 >gi|251793588|ref|YP_003008317.1| ATP-dependent DNA helicase Rep [Aggregatibacter aphrophilus NJ8700] gi|247534984|gb|ACS98230.1| ATP-dependent DNA helicase Rep [Aggregatibacter aphrophilus NJ8700] Length = 671 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 20 VLAGAGSGKTRVIINKIAHLIGKCGYLPKQIAAVTFTNKAAREMKERV 67 >gi|308185248|ref|YP_003929381.1| putative ATP-dependent DNA helicase [Helicobacter pylori SJM180] gi|308061168|gb|ADO03064.1| putative ATP-dependent DNA helicase [Helicobacter pylori SJM180] Length = 681 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78 +++++ AS + A AGSGKT L R+ L+ PS L LT T A+ EM Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGVCGVPSENTLTLTFTNKASKEM 71 Query: 79 SHRVLEII 86 R L+++ Sbjct: 72 QKRALKLL 79 >gi|293373822|ref|ZP_06620166.1| putative ATP-dependent helicase PcrA [Bacteroides ovatus SD CMC 3f] gi|298481100|ref|ZP_06999294.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. D22] gi|292631221|gb|EFF49855.1| putative ATP-dependent helicase PcrA [Bacteroides ovatus SD CMC 3f] gi|298272674|gb|EFI14241.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. D22] Length = 792 Score = 36.2 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 51/141 (36%), Gaps = 39/141 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 V A AGSGKT +L ++ LL +P +L LT T AA EM R+ Sbjct: 26 VIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFTNKAAREMKERI----------- 74 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + M +AR+L + T H+ I++ Sbjct: 75 ---------------ARQVGMERARYLWMG-----------TFHSIFSRILRAEATFIGF 108 Query: 154 TSHFAIADEEQSKKLIEEAKK 174 TS F I D SK L+ K Sbjct: 109 TSQFTIYDTADSKSLLRSIIK 129 >gi|289666279|ref|ZP_06487860.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 658 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++V+++ L+ +P+ + +T T +A EM RV + I Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMRERVAKRIRG 74 >gi|256825720|ref|YP_003149680.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547] gi|256689113|gb|ACV06915.1| DNA/RNA helicase, superfamily I [Kytococcus sedentarius DSM 20547] Length = 704 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHR 81 ++ +A++P + V A AG+GKT + R+ + A A P+ +L +T T AA EM R Sbjct: 15 QRQVAANPVGAMRVLAGAGTGKTRAITHRIAYGVHAGAFPAQQVLAVTFTARAAGEMRTR 74 Query: 82 V 82 + Sbjct: 75 L 75 >gi|218767904|ref|YP_002342416.1| putative exodeoxyribonuclease V beta chain [Neisseria meningitidis Z2491] gi|121051912|emb|CAM08218.1| putative exodeoxyribonuclease V beta chain [Neisseria meningitidis Z2491] gi|319410151|emb|CBY90487.1| exodeoxyribonuclease V beta chain [Neisseria meningitidis WUE 2594] Length = 1204 Score = 36.2 bits (82), Expect = 4.3, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L + +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRGRLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKP----------NKSDMSKARHLLITILETPGG----L 131 + + L D+ LS I + ++ + R LI L+ G Sbjct: 81 SKGIAKLGDDTLSDGIAAYCAEHHEGDTFLPELLKQALQKEGRTRLIVRLKAAIGQFDNA 140 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + LI Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVEMTEEDGDRLLI 178 >gi|294664984|ref|ZP_06730294.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325925624|ref|ZP_08187008.1| ATP-dependent DNA helicase Rep [Xanthomonas perforans 91-118] gi|292605232|gb|EFF48573.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325543973|gb|EGD15372.1| ATP-dependent DNA helicase Rep [Xanthomonas perforans 91-118] Length = 658 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++V+++ L+ +P+ + +T T +A EM RV + I Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMRERVAKRIRG 74 >gi|319938934|ref|ZP_08013298.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus 1_2_62CV] gi|319811984|gb|EFW08250.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus 1_2_62CV] Length = 760 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 + A AGSGKT +L R+ L+ +P +L +T T AA EM R Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKER 71 >gi|300863743|ref|ZP_07108674.1| ATP-dependent DNA helicase PcrA [Oscillatoria sp. PCC 6506] gi|300338250|emb|CBN53820.1| ATP-dependent DNA helicase PcrA [Oscillatoria sp. PCC 6506] Length = 794 Score = 36.2 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Query: 11 SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + T D +SQ Q + + V A AGSGKT L RV L+ + P +L + Sbjct: 14 TPTTDFLSQLNPSQRQSVEHFCGPLLVVAGAGSGKTRALTYRVANLIRTHRVDPDNILAV 73 Query: 69 THTKAAAAEMSHRV 82 T T AA EM R+ Sbjct: 74 TFTNKAAREMKERI 87 >gi|294625790|ref|ZP_06704408.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599905|gb|EFF44024.1| ATP-dependent DNA helicase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 658 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++V+++ L+ +P+ + +T T +A EM RV + I Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMRERVAKRIRG 74 >gi|311739798|ref|ZP_07713632.1| superfamily I DNA and RNA helicase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304871|gb|EFQ80940.1| superfamily I DNA and RNA helicase [Corynebacterium pseudogenitalium ATCC 33035] Length = 1059 Score = 36.2 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAE 77 T+ + + P V A AG+GKT + RV+ L+AN + P +L LT T+ AA + Sbjct: 22 TEEQAHVIEGPFSPKLVVAGAGAGKTETMASRVV-YLVANGYVRPEQVLGLTFTRKAAQQ 80 Query: 78 MSHRV 82 + R+ Sbjct: 81 LEQRI 85 >gi|21244998|ref|NP_644580.1| ATP-dependent DNA helicase [Xanthomonas axonopodis pv. citri str. 306] gi|21110722|gb|AAM39116.1| ATP-dependent DNA helicase [Xanthomonas axonopodis pv. citri str. 306] Length = 658 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++V+++ L+ +P+ + +T T +A EM RV + I Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMRERVAKRIRG 74 >gi|86137696|ref|ZP_01056272.1| DNA helicase II, putative [Roseobacter sp. MED193] gi|85825288|gb|EAQ45487.1| DNA helicase II, putative [Roseobacter sp. MED193] Length = 832 Score = 36.2 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ LL +A + +L +T T AA EM RV Sbjct: 50 AGAGTGKTKALTARIVHLLNTGSARTNEILAVTFTNKAAREMKERV 95 >gi|327473788|gb|EGF19206.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK408] Length = 762 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 + A AGSGKT +L R+ L+ +P +L +T T AA EM R ++ T Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77 >gi|325696764|gb|EGD38652.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK160] Length = 762 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 + A AGSGKT +L R+ L+ +P +L +T T AA EM R ++ T Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77 >gi|325923760|ref|ZP_08185377.1| ATP-dependent DNA helicase Rep [Xanthomonas gardneri ATCC 19865] gi|325545758|gb|EGD16995.1| ATP-dependent DNA helicase Rep [Xanthomonas gardneri ATCC 19865] Length = 658 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++V+++ L+ +P+ + +T T +A EM RV + I Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMRERVAKRIRG 74 >gi|296446499|ref|ZP_06888442.1| UvrD/REP helicase [Methylosinus trichosporium OB3b] gi|296255995|gb|EFH03079.1| UvrD/REP helicase [Methylosinus trichosporium OB3b] Length = 1135 Score = 36.2 bits (82), Expect = 4.4, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 26/47 (55%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 + A G+GKT LV RV L+ P + LT++ AA E++ R+ Sbjct: 213 LEAGPGTGKTKTLVARVAGLIADGEDPRATVVLTYSNKAACELAERI 259 >gi|21233561|ref|NP_639478.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770527|ref|YP_245289.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|188993747|ref|YP_001905757.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris str. B100] gi|21115421|gb|AAM43360.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575859|gb|AAY51269.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|167735507|emb|CAP53722.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris] Length = 658 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++V+++ L+ +P+ + +T T +A EM RV + I Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMRERVAKRIRG 74 >gi|328945990|gb|EGG40137.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1087] Length = 762 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 + A AGSGKT +L R+ L+ +P +L +T T AA EM R ++ T Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77 >gi|309378186|emb|CBX23178.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 1204 Score = 36.2 bits (82), Expect = 4.5, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L + +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKP----------NKSDMSKARHLLITILETPGG----L 131 + + L D+ LS I + ++ + R LI L+ G Sbjct: 81 SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDNA 140 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + L+ Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178 >gi|308064238|gb|ADO06125.1| DNA helicase II [Helicobacter pylori Sat464] Length = 681 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78 +++++ AS + A AGSGKT L R+ L+ PS L LT T A+ EM Sbjct: 12 NEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGTCGVPSENTLTLTFTNKASKEM 71 Query: 79 SHRVLEII 86 R L+++ Sbjct: 72 QERALKLL 79 >gi|182684161|ref|YP_001835908.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CGSP14] gi|182629495|gb|ACB90443.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CGSP14] Length = 763 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 A AGSGKT +L R+ L+ +P +L +T T AA EM R + A Sbjct: 27 AGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKAAREMKERAYSLNPA 78 >gi|78049939|ref|YP_366114.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78038369|emb|CAJ26114.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 658 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++V+++ L+ +P+ + +T T +A EM RV + I Sbjct: 21 VLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKSAKEMRERVAKRIRG 74 >gi|327459916|gb|EGF06256.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1057] Length = 762 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 + A AGSGKT +L R+ L+ +P +L +T T AA EM R ++ T Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAEKLKT 77 >gi|325203871|gb|ADY99324.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis M01-240355] Length = 1204 Score = 35.8 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 24/158 (15%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKP----------NKSDMSKARHLLITILETPGG----L 131 + + L D+ LS I + ++ + R LI L+ G Sbjct: 81 SKGIAKLGDDTLSDGIAAYCAEHHEGDTFLPELLKQALQKEGRTRLIVRLKAAIGQFDNA 140 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + LI Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178 >gi|313906496|ref|ZP_07839829.1| UvrD/REP helicase [Eubacterium cellulosolvens 6] gi|313468662|gb|EFR64031.1| UvrD/REP helicase [Eubacterium cellulosolvens 6] Length = 799 Score = 35.8 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 51/177 (28%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ ++ P ++ +T T AA EM RV +++ Sbjct: 24 ILAGAGSGKTRVLTCRIAHMIAEKGVAPWNIMAITFTNKAAGEMRERVDQLVG------- 76 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 QG + V T H+ C I++++ Sbjct: 77 ----------QGAD---------------------NIWVSTFHSSCCRILRRYIDRIGYD 105 Query: 155 SHFAIADEEQSKKLIEEA------------KKSTLASIMLDNNEELKKAFYEILEIS 199 F I D + SK++++E ++S LA I NE + +E IS Sbjct: 106 RSFTIYDTDDSKQVMKEVIRALQLDTKVFKERSILAKISAAKNEMIGPEQFEEEAIS 162 >gi|223042143|ref|ZP_03612314.1| ATP-dependent DNA helicase [Actinobacillus minor 202] gi|223017082|gb|EEF15523.1| ATP-dependent DNA helicase [Actinobacillus minor 202] Length = 672 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 20 VLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAAREMRERV 67 >gi|322385749|ref|ZP_08059393.1| ATP-dependent DNA helicase PcrA [Streptococcus cristatus ATCC 51100] gi|321270487|gb|EFX53403.1| ATP-dependent DNA helicase PcrA [Streptococcus cristatus ATCC 51100] Length = 762 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 + A AGSGKT +L R+ L+ +P +L +T T AA EM R Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMKER 71 >gi|254804663|ref|YP_003082884.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis alpha14] gi|254668205|emb|CBA04955.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis alpha14] Length = 1204 Score = 35.8 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 26/159 (16%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L + +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130 + + L D LS I + +K D + R LI L+ G Sbjct: 81 SKEIAELGDGALSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + LI Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178 >gi|319779422|ref|YP_004130335.1| DNA helicase IV [Taylorella equigenitalis MCE9] gi|317109446|gb|ADU92192.1| DNA helicase IV [Taylorella equigenitalis MCE9] Length = 619 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 6/106 (5%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78 T+++ A+ +++ V A AG+GKT ++ RV L + P +L L K AA EM Sbjct: 11 TQNQYKAATSNSQNILVLAGAGTGKTSTIIGRVSYLAMHLGIPPEQILMLAFGKDAAKEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAE----ITKIQGKKPNKSDMSKARHL 120 R LE + A + + ++K++ K P + +S+ ++L Sbjct: 71 QER-LESVDALKSVEVRTFHSLGLNIVSKVEKKMPKLTSLSEDQNL 115 >gi|312194643|ref|YP_004014704.1| UvrD/REP helicase [Frankia sp. EuI1c] gi|311225979|gb|ADP78834.1| UvrD/REP helicase [Frankia sp. EuI1c] Length = 1140 Score = 35.8 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 28/47 (59%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 V A G+GKT LV+ V R + A ++L LT ++ AA E+S R+ Sbjct: 62 VLAGPGTGKTTTLVEAVARRVEAGQELGSILVLTFSRRAARELSERI 108 >gi|255034929|ref|YP_003085550.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053] gi|254947685|gb|ACT92385.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053] Length = 1112 Score = 35.8 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 21/170 (12%) Query: 37 SANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 S++AGSGKT+ L + L+L L + + +L +T T AAA EM R+L ++ ++ + Sbjct: 6 SSSAGSGKTYTLTKEYLKLALHSNSELYFRHILAVTFTNAAANEMKDRILLMLRTFAAYT 65 Query: 94 DE------ILSAEITKIQGKKPNKSDM---------SKARHLLITILETPGGLKVQTIHA 138 + ++ + ++ + +++ ++A+ + IL V TI Sbjct: 66 ETDAQPHPMMRDVVVEMYPDTEHNTELFAGACQLIAARAQMVFGQILHRYSDFSVMTIDK 125 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 F + ++ F E I F + + L++ A LA I + E L Sbjct: 126 FTQRLISSFTDELGIPFIF---ETQLDSDLLDGAVDRLLARIGQEGEEVL 172 >gi|87122177|ref|ZP_01078060.1| exodeoxyribonuclease V, 135 kDa subunit [Marinomonas sp. MED121] gi|86162497|gb|EAQ63779.1| exodeoxyribonuclease V, 135 kDa subunit [Marinomonas sp. MED121] Length = 1255 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 20/145 (13%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST---------LLCLTHTKAAAAEMSHRVLEII 86 + A+AG+GKT+ + LRLLL S +L +T T+AA AE+ R+ I Sbjct: 26 IEASAGTGKTYTIANLYLRLLLPIDSKSGFERALTVDEILVVTFTEAATAELKARIRNRI 85 Query: 87 TA------WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 D LS + + +++++ L+ + + TIH FC Sbjct: 86 REARKALLLGQTKDPFLSQLLASM-----TEAEIALGVERLLYAEKQMDEAAIFTIHGFC 140 Query: 141 EAIMQQFPLEANITSHFAIADEEQS 165 + ++ Q E+ + I +EQ+ Sbjct: 141 QRMLSQNAFESRMLFQQEIETDEQA 165 >gi|298368781|ref|ZP_06980099.1| exodeoxyribonuclease V, beta subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298282784|gb|EFI24271.1| exodeoxyribonuclease V, beta subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 1211 Score = 35.8 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 42/153 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHR----------VLE 84 + A+AG+GKT+ + RL++ P ++L +T TKAA AE+ R VLE Sbjct: 21 IEASAGTGKTYGIAALFTRLVVLERLPVESVLAVTFTKAATAELKTRLRARLDEVLQVLE 80 Query: 85 IIT-------------AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG- 130 I+ A H D L A + ++ ++R LI L+ G Sbjct: 81 NISDGEDGSDGLDAYCAAHHPDDAFLPALL--------RRALRQESRGRLIVRLKAAIGQ 132 Query: 131 ---LKVQTIHAFCEAIMQQF------PLEANIT 154 + TIH FC+ I++ + PL+ +T Sbjct: 133 FDNAAIYTIHGFCQRILRDYAFLCSAPLDVELT 165 >gi|254441324|ref|ZP_05054817.1| UvrD/REP helicase domain protein [Octadecabacter antarcticus 307] gi|198251402|gb|EDY75717.1| UvrD/REP helicase domain protein [Octadecabacter antarcticus 307] Length = 833 Score = 35.8 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R+ L+ A P +L +T T AA EM +R+ Sbjct: 59 AGAGTGKTKALTCRIAHLMATGRARPDEILAVTFTNKAAREMKNRI 104 >gi|160895970|ref|YP_001561552.1| exodeoxyribonuclease V subunit beta [Delftia acidovorans SPH-1] gi|160361554|gb|ABX33167.1| exodeoxyribonuclease V, beta subunit [Delftia acidovorans SPH-1] Length = 1274 Score = 35.8 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 22/156 (14%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAH----------------PSTLLCLTHTKAAAA 76 S + A+AG+GKT + LRL+L + P +L +T T+AA Sbjct: 25 SRLIEASAGTGKTWTIAALYLRLVLGHGEGSLDGISSTAFERPLMPPDILVMTFTRAATR 84 Query: 77 EMSHRVLE-IITAWSHLSDEILSAE----ITKIQGKKPNKSDMSKARHLLITILETPGGL 131 E+S R+ + +I A E A + ++ P + +A L E Sbjct: 85 ELSDRIRKRLIEAVQCFRGEAEPAPHDAFLHALREAYPEGAARERAAWRLAMAAECMDDA 144 Query: 132 KVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSK 166 + TI A+C+ ++++ ++ N+ DE Q + Sbjct: 145 AIHTIDAWCQRMLREHAFDSGNLFDETLEPDESQRQ 180 >gi|294677028|ref|YP_003577643.1| DNA helicase II [Rhodobacter capsulatus SB 1003] gi|294475848|gb|ADE85236.1| DNA helicase II [Rhodobacter capsulatus SB 1003] Length = 852 Score = 35.8 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R+ L+ + A P+ +L +T T AA EM R+ Sbjct: 54 AGAGTGKTKALTARIAHLIHSGRARPNEVLAVTFTNKAAREMKDRI 99 >gi|221135348|ref|ZP_03561651.1| ATP-dependent DNA helicase Rep [Glaciecola sp. HTCC2999] Length = 407 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLL-CLTHTKAAAAEMSHRVLEIIT 87 V A AGSGKT ++ ++ L+ P+ + +T T AA EM RV + +T Sbjct: 20 VLAGAGSGKTRVITNKIAHLVRECEMPARFIAAVTFTNKAAREMKERVAQTLT 72 >gi|28197981|ref|NP_778295.1| DNA-dependent helicase II [Xylella fastidiosa Temecula1] gi|28056041|gb|AAO27944.1| DNA helicase II [Xylella fastidiosa Temecula1] gi|307579063|gb|ADN63032.1| DNA-dependent helicase II [Xylella fastidiosa subsp. fastidiosa GB514] Length = 728 Score = 35.8 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82 + A AGSGKT +L R++ L N P+ +++ +T T AA E+ R+ Sbjct: 27 ILAGAGSGKTRVLTHRIVWLNEVNGVPTHSMMAVTFTNKAAGEIQQRI 74 >gi|119775036|ref|YP_927776.1| exodeoxyribonuclease V subunit beta [Shewanella amazonensis SB2B] gi|119767536|gb|ABM00107.1| exodeoxyribonuclease V, beta subunit [Shewanella amazonensis SB2B] Length = 1224 Score = 35.8 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 12/137 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEIITAWS 90 + A+AG+GKT+ + LRLLL +L +T T AA +E+ R+ I Sbjct: 20 IEASAGTGKTYTIANLYLRLLLGIGQQRPFKVEEILVVTFTNAATSELRDRIRRRIQDGF 79 Query: 91 HLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 L S + +T++ P++ + L + L+ + TIH FC+ ++ Sbjct: 80 RLCLGEPSEDRFLTQLLHALPDRQLALRQLDLALKTLDEAA---IYTIHGFCQRVLSDMA 136 Query: 149 LEANI--TSHFAIADEE 163 E+ + S F + D E Sbjct: 137 FESALLFESEFTLDDSE 153 >gi|163847396|ref|YP_001635440.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl] gi|222525244|ref|YP_002569715.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl] gi|163668685|gb|ABY35051.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl] gi|222449123|gb|ACM53389.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl] Length = 644 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70 E ++L++ + + A P V A AGSGKT +L R+ L+ P +L +T Sbjct: 2 EQLNLLNPAQRAAVTA--PIGPILVKAGAGSGKTRVLTLRIAYLITHYGVAPQQILAVTF 59 Query: 71 TKAAAAEMSHRV 82 T AA EM R+ Sbjct: 60 TNKAAREMRERL 71 >gi|240115219|ref|ZP_04729281.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID18] gi|260440963|ref|ZP_05794779.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae DGI2] gi|268600900|ref|ZP_06135067.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID18] gi|291044290|ref|ZP_06569999.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae DGI2] gi|268585031|gb|EEZ49707.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID18] gi|291011184|gb|EFE03180.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae DGI2] Length = 1200 Score = 35.8 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPN----------KSDMSKARHLLITILETPGG----L 131 + + L D+ LS I + ++ ++R LI L+ G Sbjct: 81 SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNA 140 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + L+ Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178 >gi|117676144|ref|YP_863720.1| UvrD/REP helicase [Shewanella sp. ANA-3] gi|117614968|gb|ABK50421.1| UvrD/REP helicase [Shewanella sp. ANA-3] Length = 599 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 +Q L + + V A GSGKT++LV+ RLL + S L LT T AA E++ R+ Sbjct: 6 DQGLVIERDDNTLVCALPGSGKTYVLVELTKRLLSRDGAYSVHL-LTFTDAARVELTERM 64 Query: 83 LEIIT 87 L +T Sbjct: 65 LHALT 69 >gi|212710202|ref|ZP_03318330.1| hypothetical protein PROVALCAL_01261 [Providencia alcalifaciens DSM 30120] gi|212687201|gb|EEB46729.1| hypothetical protein PROVALCAL_01261 [Providencia alcalifaciens DSM 30120] Length = 675 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 18/120 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLE---------- 84 V A AGSGKT ++ ++ L+ P + +T T AA EM RV + Sbjct: 20 VLAGAGSGKTRVITNKIAHLIRHCGYQPRQIAAVTFTNKAAREMKERVGQTLGKKEARGL 79 Query: 85 IITAWSHLSDEILSAEITKIQGKKPN------KSDMSKARHLLITILETPGGLKVQTIHA 138 II+ + L EI+ E K G K N + M+ + L +LE L Q I A Sbjct: 80 IISTFHTLGLEIIKREY-KALGIKANFSLFDDQDQMALLKELTFDLLEEDKDLLQQLISA 138 >gi|146168499|ref|XP_001016833.2| UvrD/REP helicase family protein [Tetrahymena thermophila] gi|146145189|gb|EAR96588.2| UvrD/REP helicase family protein [Tetrahymena thermophila SB210] Length = 881 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 R ++A AGSGKT +++ + L +P + T A+ +M R +E++ + Sbjct: 33 NRDIKITACAGSGKTQCVLEFTKQALKEGFNPKEICITTFNIQASNDMKKRAIELMGKFQ 92 Query: 91 HLSDEILSAE--ITKI 104 EIL+ + ITK Sbjct: 93 ADQIEILNFDKIITKF 108 >gi|227832527|ref|YP_002834234.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] gi|262183605|ref|ZP_06043026.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] gi|227453543|gb|ACP32296.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] Length = 1070 Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAE 77 T+ + + P V A AG+GKT + RV+ L+AN P +L LT T+ AA + Sbjct: 25 TQEQAAVIDGPLGPKLVVAGAGAGKTETMASRVVS-LVANGLVRPEQVLGLTFTRKAAQQ 83 Query: 78 MSHRV 82 + R+ Sbjct: 84 LEQRI 88 >gi|110834680|ref|YP_693539.1| exodeoxyribonuclease V subunit beta [Alcanivorax borkumensis SK2] gi|110647791|emb|CAL17267.1| Exodeoxyribonuclease V beta chain [Alcanivorax borkumensis SK2] Length = 1206 Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 23/163 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEII 86 + A+AG+GKT L LRL+L + P +L +T T+AA E+ R+ + + Sbjct: 19 IEASAGTGKTFTLAALYLRLVLGHGGENGFSRPLLPPEILVVTFTEAATEELRERIRDRL 78 Query: 87 TAWSHL--------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + + D +L+A ++ N+ S A+ L + + TIH Sbjct: 79 ADAARIFADPHAEADDPVLAALLSDYS---ENEQRTSCAQR-LDAAAQWMDEAAIYTIHG 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 FC +++Q ++ S F++ +E + + + A + S++ Sbjct: 135 FCNRMLKQHAFDSG--SLFSLELQEDASEEQQLAARDYWRSVI 175 >gi|240127764|ref|ZP_04740425.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae SK-93-1035] gi|268686157|ref|ZP_06153019.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae SK-93-1035] gi|268626441|gb|EEZ58841.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae SK-93-1035] Length = 1200 Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPN----------KSDMSKARHLLITILETPGG----L 131 + + L D+ LS I + ++ ++R LI L+ G Sbjct: 81 SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNA 140 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + L+ Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178 >gi|240016125|ref|ZP_04722665.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA6140] Length = 1200 Score = 35.8 bits (81), Expect = 5.1, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPN----------KSDMSKARHLLITILETPGG----L 131 + + L D+ LS I + ++ ++R LI L+ G Sbjct: 81 SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNA 140 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + L+ Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178 >gi|114320846|ref|YP_742529.1| UvrD/REP helicase [Alkalilimnicola ehrlichii MLHE-1] gi|114227240|gb|ABI57039.1| UvrD/REP helicase [Alkalilimnicola ehrlichii MLHE-1] Length = 683 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRV 82 A V A AGSGKT +R R L P S ++ LT T AA EM R+ Sbjct: 16 PAAVLAGAGSGKTRCTTERAARRLTERGLPGSAMVLLTFTNKAAGEMRERL 66 >gi|295090956|emb|CBK77063.1| Superfamily I DNA and RNA helicases [Clostridium cf. saccharolyticum K10] Length = 1133 Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMS 79 + ++ A+ P RS V A G+GKT L R+ LL + PS + +T T AA E+ Sbjct: 515 REQRRAAALPARSMAVIAGPGTGKTGTLTARIRCLLEVRRVRPSEITAVTFTNRAAEELR 574 Query: 80 HRV 82 R+ Sbjct: 575 ERL 577 >gi|315652267|ref|ZP_07905259.1| ATP-dependent helicase PcrA [Eubacterium saburreum DSM 3986] gi|315485390|gb|EFU75780.1| ATP-dependent helicase PcrA [Eubacterium saburreum DSM 3986] Length = 733 Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L+ R+ L+ + P ++ +T T AA EM R+ +I Sbjct: 27 AGAGSGKTGVLMHRIAYLINEKHIDPYNIMAITFTNKAAKEMKERITNLI 76 >gi|289208791|ref|YP_003460857.1| exodeoxyribonuclease V subunit beta [Thioalkalivibrio sp. K90mix] gi|288944422|gb|ADC72121.1| exodeoxyribonuclease V, beta subunit [Thioalkalivibrio sp. K90mix] Length = 1240 Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 9/63 (14%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVL 83 S + A+AG+GKT+ + LRL+L + P +L +T T+AA E+ R+ Sbjct: 18 SRLIEASAGTGKTYTIAALYLRLVLGHGELPEGTGELTPPQILVMTFTEAATRELRERIR 77 Query: 84 EII 86 ++ Sbjct: 78 AVL 80 >gi|308272255|emb|CBX28861.1| hypothetical protein N47_B20070 [uncultured Desulfobacterium sp.] Length = 1762 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68 + ++ + E ++ S P + + A GSGKT +++ R LL + P ++L L Sbjct: 1110 YGRIVESLKNPIQESIVCSSPEDNILILAGPGSGKTTVVIHRCAYLLRVERVPPGSILAL 1169 Query: 69 THTKAAAAEMSHRVLEIITA 88 +AA + R+ ++I + Sbjct: 1170 CFNHSAALSIRKRLWDLIGS 1189 >gi|190576450|ref|YP_001974295.1| putative exodeoxyribonuclease V beta chain [Stenotrophomonas maltophilia K279a] gi|190014372|emb|CAQ48020.1| putative exodeoxyribonuclease V beta chain [Stenotrophomonas maltophilia K279a] Length = 1226 Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 12/130 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT L RL++ +L +T T AA E+ R+ E + + L D Sbjct: 29 IEASAGTGKTFTLATLFTRLVVEQGLRIGQILAVTFTDAATQELRKRIRERLALAARLVD 88 Query: 95 ---------EI-LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 E+ L+ ++ + + +S + R L + E + TIH FC ++ Sbjct: 89 LEAADDEAPEVRLTRDVLQRHLQCGTESAAALKRRLQVAADEIDLA-SIFTIHGFCTRVL 147 Query: 145 QQFPLEANIT 154 ++ LE+ T Sbjct: 148 REHALESGHT 157 >gi|163816456|ref|ZP_02207820.1| hypothetical protein COPEUT_02645 [Coprococcus eutactus ATCC 27759] gi|158448156|gb|EDP25151.1| hypothetical protein COPEUT_02645 [Coprococcus eutactus ATCC 27759] Length = 768 Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%) Query: 20 TKSEQLLASDPTRSAWVS--ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76 T +E+ L + T +V A AG+GKT L R L+ S +LC+T T AA Sbjct: 60 TLNERQLDAVTTTEGYVRIIAGAGTGKTKALTHRYAYLVNELGISTSNILCVTFTNKAAR 119 Query: 77 EMSHRVLEII 86 EMS R+ ++I Sbjct: 120 EMSKRIRQMI 129 >gi|23428614|gb|AAM12391.1| helicase II [Zymomonas mobilis subsp. mobilis CP4] Length = 777 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 V A AG+GKT L R+ L+ A PS +L +T T AA EM RV ++ +++ Sbjct: 39 VLAGAGTGKTAALTARLAYLVETLKAWPSQILAVTFTNKAAREMQMRVGYLLGSFA 94 >gi|313888327|ref|ZP_07821998.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845730|gb|EFR33120.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 734 Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 41/160 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72 I+ ++ + E LLA++ + A AGSGKT ++ ++ L+ PS +L +T T Sbjct: 3 INTLNDKQKEALLATEG--PLLILAGAGSGKTKVVTSKIAYLIEELQVPSWKILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV S L DE +S+ + Sbjct: 61 KAANEMRDRV-------SKLIDEDISS-------------------------------MW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 + T H+ C I+++ + +S F I D + +++EA Sbjct: 83 IGTFHSICVRILRKNIDKIGYSSSFTIYDRDDQLTVVKEA 122 >gi|240125312|ref|ZP_04738198.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae SK-92-679] gi|268683914|ref|ZP_06150776.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae SK-92-679] gi|268624198|gb|EEZ56598.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae SK-92-679] Length = 1200 Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPN----------KSDMSKARHLLITILETPGG----L 131 + + L D+ LS I + ++ ++R LI L+ G Sbjct: 81 SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNA 140 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + L+ Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178 >gi|240112479|ref|ZP_04726969.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae MS11] gi|268598547|ref|ZP_06132714.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae MS11] gi|268582678|gb|EEZ47354.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae MS11] Length = 1200 Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPN----------KSDMSKARHLLITILETPGG----L 131 + + L D+ LS I + ++ ++R LI L+ G Sbjct: 81 SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNA 140 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + L+ Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178 >gi|240080267|ref|ZP_04724810.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA19] gi|240123060|ref|ZP_04736016.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID332] gi|268596417|ref|ZP_06130584.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae FA19] gi|268681687|ref|ZP_06148549.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID332] gi|268550205|gb|EEZ45224.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae FA19] gi|268621971|gb|EEZ54371.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID332] Length = 1200 Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPN----------KSDMSKARHLLITILETPGG----L 131 + + L D+ LS I + ++ ++R LI L+ G Sbjct: 81 SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNA 140 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + L+ Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178 >gi|239998560|ref|ZP_04718484.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae 35/02] gi|240013685|ref|ZP_04720598.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae DGI18] gi|240120754|ref|ZP_04733716.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID24-1] gi|268594420|ref|ZP_06128587.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae 35/02] gi|268547809|gb|EEZ43227.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae 35/02] gi|317163836|gb|ADV07377.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae TCDC-NG08107] Length = 1200 Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPN----------KSDMSKARHLLITILETPGG----L 131 + + L D+ LS I + ++ ++R LI L+ G Sbjct: 81 SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNA 140 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + L+ Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178 >gi|254493282|ref|ZP_05106453.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae 1291] gi|293399482|ref|ZP_06643635.1| exodeoxyribonuclease V, beta subunit [Neisseria gonorrhoeae F62] gi|226512322|gb|EEH61667.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae 1291] gi|291610051|gb|EFF39173.1| exodeoxyribonuclease V, beta subunit [Neisseria gonorrhoeae F62] Length = 1200 Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPN----------KSDMSKARHLLITILETPGG----L 131 + + L D+ LS I + ++ ++R LI L+ G Sbjct: 81 SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNA 140 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + L+ Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178 >gi|206603867|gb|EDZ40347.1| Putative ATP-dependent DNA helicase, UvrD/REP family [Leptospirillum sp. Group II '5-way CG'] Length = 746 Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +++ R+L LL LL +T T+ AA E+ HR+ Sbjct: 23 VLAPAGSGKTRVVIARLLYLLDRYGWSEERLLVVTFTRKAARELLHRI 70 >gi|240117506|ref|ZP_04731568.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID1] gi|268603206|ref|ZP_06137373.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID1] gi|268587337|gb|EEZ52013.1| exodeoxyribonuclease V beta subunit [Neisseria gonorrhoeae PID1] Length = 1200 Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPN----------KSDMSKARHLLITILETPGG----L 131 + + L D+ LS I + ++ ++R LI L+ G Sbjct: 81 SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNA 140 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + L+ Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178 >gi|229592597|ref|YP_002874716.1| exodeoxyribonuclease V subunit beta [Pseudomonas fluorescens SBW25] gi|229364463|emb|CAY52290.1| exodeoxyribonuclease V beta chain [Pseudomonas fluorescens SBW25] Length = 1224 Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 14/132 (10%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT + LRL+L + P +L +T T AA E+ R+ Sbjct: 15 SQLIEASAGTGKTFTISALYLRLVLGHGGDEAGFGRELLPPQILVVTFTDAATKELRERI 74 Query: 83 -LEIITAWSHLSDEILS--AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + + A +EI A I ++ + P + + A L I + V TIH++ Sbjct: 75 RIRLAEAARFFREEIEQPDALIADLRAEYPPEQWPACANRLDIAA-QWMDEAAVSTIHSW 133 Query: 140 CEAIMQQFPLEA 151 C+ ++++ ++ Sbjct: 134 CQRMLREHAFDS 145 >gi|194098105|ref|YP_002001153.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae NCCP11945] gi|193933395|gb|ACF29219.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae NCCP11945] Length = 1200 Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPN----------KSDMSKARHLLITILETPGG----L 131 + + L D+ LS I + ++ ++R LI L+ G Sbjct: 81 SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNA 140 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + L+ Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178 >gi|59800814|ref|YP_207526.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA 1090] gi|59717709|gb|AAW89114.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA 1090] Length = 1200 Score = 35.8 bits (81), Expect = 5.3, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 24/158 (15%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPN----------KSDMSKARHLLITILETPGG----L 131 + + L D+ LS I + ++ ++R LI L+ G Sbjct: 81 SKEIAELGDDTLSDGIAAYCAEHHEGDTFLPALLEQALQKESRTRLIVRLKAAIGQFDNA 140 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + L+ Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178 >gi|310639683|ref|YP_003944441.1| ATP-dependent DNA helicase pcra [Paenibacillus polymyxa SC2] gi|309244633|gb|ADO54200.1| ATP-dependent DNA helicase PcrA [Paenibacillus polymyxa SC2] Length = 747 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 65/153 (42%), Gaps = 27/153 (17%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA AGSGKT +V VL+L+ + +T T A+ EM R LE + + D Sbjct: 30 VSAGAGSGKTRTMVATVLQLIDDGEVNIDDFALITFTNKASDEMRER-LE-----NGVYD 83 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + AE K++ R I E + TIH FC ++ F T Sbjct: 84 RVKEAE----------KNNDFTQRTRWIEQKERIASTFIGTIHKFCTMLLLNF----GYT 129 Query: 155 SHFAIADEEQ---SKKLIEEAKKSTLASIMLDN 184 H IA E Q +K + A K T++ LDN Sbjct: 130 EH--IAHESQILMAKHYFKTALKKTMSE-ALDN 159 >gi|183600255|ref|ZP_02961748.1| hypothetical protein PROSTU_03807 [Providencia stuartii ATCC 25827] gi|188020043|gb|EDU58083.1| hypothetical protein PROSTU_03807 [Providencia stuartii ATCC 25827] Length = 673 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 18/118 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLE---------- 84 V A AGSGKT ++ ++ L+ + P + +T T AA EM RV + Sbjct: 20 VLAGAGSGKTRVITNKIAHLIRQCGYQPRQIAAVTFTNKAAREMKERVAQTLGRKEARGL 79 Query: 85 IITAWSHLSDEILSAEITKIQGKKPN------KSDMSKARHLLITILETPGGLKVQTI 136 II+ + L EI+ E K G K N + M+ + L +LE L Q I Sbjct: 80 IISTFHTLGLEIIKREY-KALGIKANFSLFDDQDQMALLKELTFDLLEEDKDLLQQLI 136 >gi|322372977|ref|ZP_08047513.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C150] gi|321278019|gb|EFX55088.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C150] Length = 775 Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + + A S Sbjct: 31 IMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNKAAREMRERAMALNPATS 86 >gi|301308960|ref|ZP_07214905.1| UvrD/REP helicase family protein [Bacteroides sp. 20_3] gi|300832986|gb|EFK63611.1| UvrD/REP helicase family protein [Bacteroides sp. 20_3] Length = 871 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 4/80 (5%) Query: 4 HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHP 62 H F +H L Q + + + + V ++AGSGKT +V +V L + +P Sbjct: 143 HKEFFDHCLKYPLDKQQRRSIVSGEE---NCLVVSSAGSGKTSSIVGKVKYLTEIKKINP 199 Query: 63 STLLCLTHTKAAAAEMSHRV 82 +L +++T AAAE++ R+ Sbjct: 200 QNILLISYTNKAAAELTERM 219 >gi|148272380|ref|YP_001221941.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830310|emb|CAN01244.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 637 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEI 85 V A AG+GKT + R+ + A +P ++ LT T AAAE+ R+ E+ Sbjct: 68 VLAGAGTGKTRAITHRIAYGIQAGVYPPNRVMALTFTSRAAAELRGRLREL 118 >gi|258510954|ref|YP_003184388.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477680|gb|ACV57999.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 705 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT +L +R+ L+ A +L +T T AA EM R+ ++I Sbjct: 28 VVAGAGSGKTSVLTRRIAYLIAHAGVAVHEILAITFTNKAAREMKTRIRDLI 79 >gi|124514998|gb|EAY56509.1| putative ATP-dependent DNA helicase, UvrD/REP family [Leptospirillum rubarum] Length = 746 Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +++ R+L LL LL +T T+ AA E+ HR+ Sbjct: 23 VLAPAGSGKTRVVIARLLYLLDRYGWSEDRLLVVTFTRKAARELLHRI 70 >gi|323136051|ref|ZP_08071134.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242] gi|322399142|gb|EFY01661.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242] Length = 778 Score = 35.8 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT L R+ +L L A +L +T T AA EM RV ++ Sbjct: 48 VLAGAGTGKTRALTTRIAHILQLGKARAYEILAVTFTNKAAREMRERVEALV 99 >gi|309390072|gb|ADO77952.1| UvrD/REP helicase [Halanaerobium praevalens DSM 2228] Length = 677 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 +++ A T V A AGSGKT L R L+ +L +T T AA +M ++ Sbjct: 12 QKIAAQTLTGPVLVLAGAGSGKTRTLTYRTANLIQNGVSHQNILTVTFTNRAADDMKAKI 71 Query: 83 LEIITAWSHLSDEI 96 ++I S + DE+ Sbjct: 72 GKLI--GSEIIDEM 83 >gi|284031863|ref|YP_003381794.1| exodeoxyribonuclease V subunit beta [Kribbella flavida DSM 17836] gi|283811156|gb|ADB32995.1| exodeoxyribonuclease V, beta subunit [Kribbella flavida DSM 17836] Length = 1098 Score = 35.8 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 26/138 (18%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVL 83 LL PT + + A+AG+GKT+ L V R + A +L +T +AA+ E+ RV Sbjct: 6 LLGPLPTGTTVLEASAGTGKTYALAGLVTRYVAEGAARLDEMLLITFGRAASQELRERV- 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL--------------LITILETPG 129 ++L AE + +P ++D HL L L T Sbjct: 65 ---------RCQLLEAE-QALAAPEPWRNDPGLLGHLVDGSAAELAVRHGRLRDALATFD 114 Query: 130 GLKVQTIHAFCEAIMQQF 147 + T H FC+ +++ Sbjct: 115 AATIATTHQFCQLVLRSL 132 >gi|242280428|ref|YP_002992557.1| UvrD/REP helicase [Desulfovibrio salexigens DSM 2638] gi|242123322|gb|ACS81018.1| UvrD/REP helicase [Desulfovibrio salexigens DSM 2638] Length = 1034 Score = 35.8 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A G+GKT L+ R+ LL +L LT T+ AA EM+ R+ ++ DE Sbjct: 480 VIAGPGTGKTQTLMGRIKHLLERGTRARRILALTFTRKAAEEMNDRMRSMLG-----DDE 534 Query: 96 IL 97 +L Sbjct: 535 VL 536 >gi|212704689|ref|ZP_03312817.1| hypothetical protein DESPIG_02752 [Desulfovibrio piger ATCC 29098] gi|212671923|gb|EEB32406.1| hypothetical protein DESPIG_02752 [Desulfovibrio piger ATCC 29098] Length = 713 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 7/63 (11%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 V A AGSGKT + R+ L P ++L LT T+ AA EM R + LSD Sbjct: 25 VVAGAGSGKTRTITYRLSWLADHGVPPESMLLLTFTRKAAQEMLQRA-------AALSDH 77 Query: 96 ILS 98 LS Sbjct: 78 ALS 80 >gi|152969548|ref|YP_001334657.1| DNA helicase IV [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954397|gb|ABR76427.1| DNA helicase IV [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 684 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 6/66 (9%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 RS V A AGSGKT +LV R LL A +L L + AA EM R+ E + Sbjct: 210 RSLLVLAGAGSGKTSVLVARAGWLLARGEAAADQILLLAFGRQAAQEMDERIRERLA--- 266 Query: 91 HLSDEI 96 SD+I Sbjct: 267 --SDDI 270 >gi|126741390|ref|ZP_01757064.1| DNA helicase II, putative [Roseobacter sp. SK209-2-6] gi|126717526|gb|EBA14254.1| DNA helicase II, putative [Roseobacter sp. SK209-2-6] Length = 794 Score = 35.8 bits (81), Expect = 5.6, Method: Composition-based stats. Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R++ LL +A + +L +T T AA EM RV Sbjct: 50 AGAGTGKTKALTARIVHLLNTGSARTNEILAVTFTNKAAREMKERV 95 >gi|15836655|ref|NP_297343.1| DNA-dependent helicase II [Xylella fastidiosa 9a5c] gi|9104818|gb|AAF82863.1|AE003859_4 DNA helicase II [Xylella fastidiosa 9a5c] Length = 728 Score = 35.8 bits (81), Expect = 5.8, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69 S +D ++Q + E + A+ + A AGSGKT +L R++ L + P+ +++ +T Sbjct: 4 SHVLDHLNQNQREAVAAA--PGHYLILAGAGSGKTRVLTHRIVWLNEVHGVPTHSMMAVT 61 Query: 70 HTKAAAAEMSHRV 82 T AA E+ R+ Sbjct: 62 FTNKAAGEIQQRI 74 >gi|330010295|ref|ZP_08306722.1| helicase IV [Klebsiella sp. MS 92-3] gi|328534585|gb|EGF61165.1| helicase IV [Klebsiella sp. MS 92-3] Length = 684 Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 6/66 (9%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 RS V A AGSGKT +LV R LL A +L L + AA EM R+ E + Sbjct: 210 RSLLVLAGAGSGKTSVLVARAGWLLARGEAAADQILLLAFGRQAAQEMDERIRERLA--- 266 Query: 91 HLSDEI 96 SD+I Sbjct: 267 --SDDI 270 >gi|307108879|gb|EFN57118.1| hypothetical protein CHLNCDRAFT_51440 [Chlorella variabilis] Length = 418 Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 19 QTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAA 76 Q EQ A + P V A GSGKT +LV RV L+ + S LL +T T AA Sbjct: 6 QLNEEQRAAVTAPLGPVRVMAGPGSGKTKVLVARVAELIQTHGISSSKLLAVTFTNKAAG 65 Query: 77 EMSHRV 82 E+ R+ Sbjct: 66 ELQERL 71 >gi|238894018|ref|YP_002918752.1| DNA helicase IV [Klebsiella pneumoniae NTUH-K2044] gi|238546334|dbj|BAH62685.1| DNA helicase IV [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 684 Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 6/66 (9%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 RS V A AGSGKT +LV R LL A +L L + AA EM R+ E + Sbjct: 210 RSLLVLAGAGSGKTSVLVARAGWLLARGEAAADQILLLAFGRQAAQEMDERIRERLA--- 266 Query: 91 HLSDEI 96 SD+I Sbjct: 267 --SDDI 270 >gi|301155111|emb|CBW14574.1| DNA helicase and single-stranded DNA-dependent ATPase [Haemophilus parainfluenzae T3T1] Length = 670 Score = 35.4 bits (80), Expect = 6.0, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 20 VLAGAGSGKTRVIINKIAHLIEHCGYLPKQIAAVTFTNKAAREMKERV 67 >gi|95930575|ref|ZP_01313310.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684] gi|95133410|gb|EAT15074.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684] Length = 747 Score = 35.4 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82 + A AGSGKT L RV+ L+ P +L +T T AA EM R+ Sbjct: 25 ILAGAGSGKTSTLTGRVIHLIRQQGVPPWRILAVTFTNKAAKEMKERI 72 >gi|299820618|ref|ZP_07052508.1| ATP-dependent DNA helicase PcrA [Listeria grayi DSM 20601] gi|299818113|gb|EFI85347.1| ATP-dependent DNA helicase PcrA [Listeria grayi DSM 20601] Length = 730 Score = 35.4 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 L+ EQ A + T + A AGSGKT +L R+ L+ P +L +T T Sbjct: 8 LVHGLNPEQRKAVETTEGPLLIMAGAGSGKTRVLTHRIAYLVREKGVSPYNILAITFTNK 67 Query: 74 AAAEMSHRV 82 AA EM RV Sbjct: 68 AAREMKARV 76 >gi|150015241|ref|YP_001307495.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052] gi|149901706|gb|ABR32539.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052] Length = 755 Score = 35.4 bits (80), Expect = 6.0, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 39/141 (27%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT +L R+ ++ + P ++L +T T AA EM RV +I Sbjct: 24 ILAGAGSGKTRVLTHRMAHMIEDLDIAPYSILAITFTNKAAKEMKDRVKALIG------- 76 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E + + T H+ C I+++ + Sbjct: 77 -------------------------------ERAENMWISTFHSTCVRILRREIDKIGYK 105 Query: 155 SHFAIADEEQSKKLIEEAKKS 175 S F I D K L++E K+ Sbjct: 106 SSFTIYDSSDQKTLVKECMKT 126 >gi|94497982|ref|ZP_01304546.1| UvrD/REP helicase [Sphingomonas sp. SKA58] gi|94422565|gb|EAT07602.1| UvrD/REP helicase [Sphingomonas sp. SKA58] Length = 758 Score = 35.4 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86 V A AG+GKT L R+ L+ A PS +L +T T AA EM RV +I Sbjct: 34 VLAGAGTGKTAALTARLAHLVATRRAWPSEILAVTFTNKAAREMRARVGAMI 85 >gi|148549739|ref|YP_001269841.1| exodeoxyribonuclease V subunit beta [Pseudomonas putida F1] gi|148513797|gb|ABQ80657.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudomonas putida F1] Length = 1224 Score = 35.4 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 14/145 (9%) Query: 20 TKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLT 69 T+ L S P S + A+AG+GKT + LRL+L + P +L +T Sbjct: 2 TQDRPLALSFPLHGSQLIEASAGTGKTFTISALYLRLILGHGGEQGFERELLPPQILVVT 61 Query: 70 HTKAAAAEMSHRV-LEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILE 126 T AA E+ R+ + A E+ A+ + +++ P ++ + A L I + + Sbjct: 62 FTDAATKELRERIRARLAEAARFFRGELEGADPLLHQLRDDYPQETWLRCAGRLEIAV-Q 120 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEA 151 V TIH +C+ ++++ ++ Sbjct: 121 WMDEAAVSTIHGWCQRMLREHAFDS 145 >gi|262067581|ref|ZP_06027193.1| ATP-dependent nuclease subunit A [Fusobacterium periodonticum ATCC 33693] gi|291378696|gb|EFE86214.1| ATP-dependent nuclease subunit A [Fusobacterium periodonticum ATCC 33693] Length = 1043 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 36/220 (16%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLL--LANAHP---STLLCLTHTKAAAAEMSHRVL 83 + ++ VSA+AG+GKT+ L + L +NA +L +T T+ A AE+ +L Sbjct: 2 NKIKNLVVSASAGTGKTYRLSLEYIAALSKKSNAEAVDYKNILVMTFTRKATAEIKEGIL 61 Query: 84 ----EIITAWSHLSDEILSAEITKIQGKK------------------------PNKSDMS 115 E I + + LS T + K NK + Sbjct: 62 KKLSEFIEIYDICKNSKLSVRDTILNNKNLDEKKKNNYINLIESIEKIEEDLTVNKEFLE 121 Query: 116 KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 ++ I+ LK+ TI AF I + + +++ DEE++ ++ +S Sbjct: 122 NLANIYKDIIRNKEKLKIYTIDAFLNIIFKNIVVNLMKIKSYSLIDEEENSVYYKKILES 181 Query: 176 TLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215 + L N + K F E E + D+ I ++I ++IS+R Sbjct: 182 IFTNKKLFN--DFKNFFTENSEKNIDKYI-SIIGNLISSR 218 >gi|134095190|ref|YP_001100265.1| putative DNA helicase II [Herminiimonas arsenicoxydans] gi|133739093|emb|CAL62142.1| putative DNA helicase II [Herminiimonas arsenicoxydans] Length = 588 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 QL A + V A GSGKT LV ++ R+L + P + C+T+++ A E++ R+ Sbjct: 7 QLAAYNSQGHCVVLAGPGSGKTKTLVLKLARILAEDVEAPRGVACITYSQECARELARRI 66 >gi|227530244|ref|ZP_03960293.1| ATP-dependent DNA helicase PcrA [Lactobacillus vaginalis ATCC 49540] gi|227349833|gb|EEJ40124.1| ATP-dependent DNA helicase PcrA [Lactobacillus vaginalis ATCC 49540] Length = 761 Score = 35.4 bits (80), Expect = 6.5, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 3/74 (4%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +D ++ ++E +L ++ V A AGSGKT +L R+ L+ P +L +T T Sbjct: 11 LDGMNDKQTEAVLTTEG--PLLVMAGAGSGKTRVLTHRIAYLIEEKGVLPWNILAITFTN 68 Query: 73 AAAAEMSHRVLEII 86 AA EM RV +++ Sbjct: 69 KAAREMQERVGKLL 82 >gi|227550046|ref|ZP_03980095.1| superfamily I ATP-dependent helicase [Corynebacterium lipophiloflavum DSM 44291] gi|227077892|gb|EEI15855.1| superfamily I ATP-dependent helicase [Corynebacterium lipophiloflavum DSM 44291] Length = 682 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 IDL +++ A+ P + A AG+GKT + R+ L+ + P +L +T T+ Sbjct: 3 IDLSLLDDDQRVAATAPRGPVCILAGAGTGKTRTITYRIAHLIDQSVVSPHKVLAVTFTQ 62 Query: 73 AAAAEMSHRV 82 AA EM R+ Sbjct: 63 RAAGEMRDRL 72 >gi|149012920|ref|ZP_01833833.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP19-BS75] gi|147763209|gb|EDK70149.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP19-BS75] Length = 218 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 5/49 (10%) Query: 36 VSANAGSGKTHILVQRVLRLL---LANAHPSTLLCLTHTKAAAAEMSHR 81 + A AGSGKT +L R+ L+ L N P +L +T T AA EM R Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKLVN--PWNILAITFTNKAAREMKER 71 >gi|325576766|ref|ZP_08147381.1| ATP-dependent helicase PcrA [Haemophilus parainfluenzae ATCC 33392] gi|325160972|gb|EGC73090.1| ATP-dependent helicase PcrA [Haemophilus parainfluenzae ATCC 33392] Length = 670 Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +++ ++ L+ + P + +T T AA EM RV Sbjct: 20 VLAGAGSGKTRVIINKIAHLIEHCGYLPKQIAAVTFTNKAAREMKERV 67 >gi|225376675|ref|ZP_03753896.1| hypothetical protein ROSEINA2194_02317 [Roseburia inulinivorans DSM 16841] gi|225211558|gb|EEG93912.1| hypothetical protein ROSEINA2194_02317 [Roseburia inulinivorans DSM 16841] Length = 760 Score = 35.4 bits (80), Expect = 6.6, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A AGSGKT +L R L+ +P ++ +T T AA EM R+ +++ Sbjct: 28 ILAGAGSGKTRVLTHRTAYLIEEKGVNPYNIMAITFTNKAAGEMRERIDQLV 79 >gi|157377279|ref|YP_001475879.1| ATP-dependent DNA helicase Rep [Shewanella sediminis HAW-EB3] gi|157319653|gb|ABV38751.1| ATP-dependent DNA helicase Rep [Shewanella sediminis HAW-EB3] Length = 670 Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 12/93 (12%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEI---- 85 T V A AGSGKT +++ ++ L+ + + T+ +T T AA EM RV + Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAYLVQKCGYQARTIAAVTFTNKAAREMKERVAQSMGRK 74 Query: 86 ------ITAWSHLSDEILSAEITKIQGKKPNKS 112 I+ + L EI+ E K+ G KP S Sbjct: 75 EARGLWISTFHTLGLEIIKRE-HKVVGLKPGFS 106 >gi|260881254|ref|ZP_05404011.2| ATP-dependent helicase PcrA [Mitsuokella multacida DSM 20544] gi|260848967|gb|EEX68974.1| ATP-dependent helicase PcrA [Mitsuokella multacida DSM 20544] Length = 745 Score = 35.4 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT L R L+ P +LC+T T AA EM R+ Sbjct: 53 VLAGAGSGKTRALTHRFAYLVEELGILPGNILCVTFTNKAATEMRSRI 100 >gi|228477389|ref|ZP_04062025.1| ATP-dependent DNA helicase PcrA [Streptococcus salivarius SK126] gi|228250824|gb|EEK10012.1| ATP-dependent DNA helicase PcrA [Streptococcus salivarius SK126] Length = 769 Score = 35.4 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + + A S Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAITFTNKAAREMRERAMALNPATS 80 >gi|254453679|ref|ZP_05067116.1| UvrD/REP helicase [Octadecabacter antarcticus 238] gi|198268085|gb|EDY92355.1| UvrD/REP helicase [Octadecabacter antarcticus 238] Length = 837 Score = 35.4 bits (80), Expect = 6.7, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A AG+GKT L R+ L+ A P +L +T T AA EM +R+ Sbjct: 59 AGAGTGKTKALTCRIAHLMATGGARPDEILAVTFTNKAAREMMNRI 104 >gi|312862860|ref|ZP_07723100.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis F0396] gi|311101720|gb|EFQ59923.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis F0396] Length = 769 Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + + A S Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAITFTNKAAREMRERAMALNPATS 80 >gi|297583056|ref|YP_003698836.1| ATP-dependent DNA helicase PcrA [Bacillus selenitireducens MLS10] gi|297141513|gb|ADH98270.1| ATP-dependent DNA helicase PcrA [Bacillus selenitireducens MLS10] Length = 773 Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRV 82 + A AGSGKT +L R+ L+ P ++L +T T AA EM RV Sbjct: 52 IMAGAGSGKTRVLTNRIAYLIGEKGVPHWSILAITFTNKAAREMKDRV 99 >gi|70734238|ref|YP_257878.1| exodeoxyribonuclease V subunit beta [Pseudomonas fluorescens Pf-5] gi|68348537|gb|AAY96143.1| exodeoxyribonuclease V, beta subunit [Pseudomonas fluorescens Pf-5] Length = 1230 Score = 35.4 bits (80), Expect = 6.9, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 15/146 (10%) Query: 20 TKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCL 68 T L + P R S + A+AG+GKT + LRL+L + P +L + Sbjct: 2 TAQAPLALAFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGGEAAGFGRELLPPQILVV 61 Query: 69 THTKAAAAEMSHRV-LEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITIL 125 T T AA E+ R+ + A DE + + I +++ + P + + A L I Sbjct: 62 TFTDAATKELRERIRTRLAEAARFFRDETSAPDGLIVELREQYPVEQWAACANRLDIAA- 120 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEA 151 + V TIH++C+ ++++ ++ Sbjct: 121 QWMDEAAVSTIHSWCQRMLREHAFDS 146 >gi|325206373|gb|ADZ01826.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis M04-240196] Length = 1204 Score = 35.4 bits (80), Expect = 7.0, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 26/159 (16%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L + +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKPNKSD-----------MSKARHLLITILETPGG---- 130 + + L D LS I + +K D + R LI L+ G Sbjct: 81 SKEIAKLGDGALSDGIAAYCAEH-HKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + LI Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178 >gi|322698728|gb|EFY90496.1| putative ATP-dependent DNA helicase [Metarhizium acridum CQMa 102] Length = 989 Score = 35.4 bits (80), Expect = 7.1, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLL 66 Q+ ++ +++ + + ++ PT + + A GSGKTH L RV+ L+ P+ ++ Sbjct: 4 QQPETILNSLNEAQRRAVTSNSPTVA--ILAGPGSGKTHTLTSRVVWLVQHVGYQPADVI 61 Query: 67 CLTHTKAAAAEMSHRV 82 T T AA EM R+ Sbjct: 62 VATFTVKAAREMKGRI 77 >gi|330469972|ref|YP_004407715.1| UvrD/REP helicase [Verrucosispora maris AB-18-032] gi|328812943|gb|AEB47115.1| UvrD/REP helicase [Verrucosispora maris AB-18-032] Length = 712 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 11/84 (13%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSA---------NAGSGKTHILVQRV-LRLLLANAHPST 64 ++ + SE++LA DP + + V+A AG+GKT + R+ R L Sbjct: 1 MVVNSPSERVLAGLDPEQRSAVTAPAGPVCVLAGAGTGKTRAVTSRIAYRALTGEISARH 60 Query: 65 LLCLTHTKAAAAEMSHRVLEIITA 88 +L +T T AAAE+ HR+ ++ A Sbjct: 61 VLAVTFTARAAAELRHRLAQLGVA 84 >gi|326559747|gb|EGE10157.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 7169] Length = 689 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAA 74 +S+ QL A + T+ V A AGSGKT ++ Q++ L+ P+ + +T T A Sbjct: 16 MSKLNPRQLEALNYTQGPLLVLAGAGSGKTSVITQKIAHLIENCRIPADRITAVTFTNKA 75 Query: 75 AAEMSHRVLEIIT 87 A EM RV +I++ Sbjct: 76 AREMKSRVQKILS 88 >gi|261345272|ref|ZP_05972916.1| ATP-dependent DNA helicase Rep [Providencia rustigianii DSM 4541] gi|282566971|gb|EFB72506.1| ATP-dependent DNA helicase Rep [Providencia rustigianii DSM 4541] Length = 675 Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT ++ ++ L+ P + +T T AA EM RV Sbjct: 20 VLAGAGSGKTRVITNKIAHLIRHCGYQPRQIAAVTFTNKAAREMKERV 67 >gi|88808889|ref|ZP_01124398.1| hypothetical protein WH7805_04336 [Synechococcus sp. WH 7805] gi|88786831|gb|EAR17989.1| hypothetical protein WH7805_04336 [Synechococcus sp. WH 7805] Length = 1229 Score = 35.4 bits (80), Expect = 7.3, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 34/158 (21%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT L V+RL++ LL +T T+AAA E+ R+ + + D Sbjct: 26 LEASAGTGKTFALAHLVMRLVVERELKLDALLVVTFTEAAADELRDRIGKRL-------D 78 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPG---------------------GLKV 133 L + QG + + + +L+ LE G + Sbjct: 79 GALQGLLRLEQG---DDGGGTASDAVLLEWLEEHGRDRAGRRNKASLLLEALEALERADI 135 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 TIH FC +++ LE+ + ++ D+ Q+ L+EE Sbjct: 136 TTIHGFCRRTLRRQALESGRSLDLSLDDDPQT--LVEE 171 >gi|322516818|ref|ZP_08069720.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis ATCC 49124] gi|322124655|gb|EFX96119.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis ATCC 49124] Length = 773 Score = 35.4 bits (80), Expect = 7.3, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + + A S Sbjct: 29 IMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAITFTNKAAREMRERAMALNPATS 84 >gi|320593539|gb|EFX05948.1| ATP-dependent DNA helicase [Grosmannia clavigera kw1407] Length = 1099 Score = 35.4 bits (80), Expect = 7.4, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 + A GSGKTH L RV+ L+ A + P ++ T T AA EM R+ +++ Sbjct: 94 ILAGPGSGKTHTLTSRVVWLVDALGYRPQDVIVATFTVKAAREMKERIGKVL 145 >gi|51891749|ref|YP_074440.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863] gi|51855438|dbj|BAD39596.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863] Length = 672 Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78 V A GSGKT ++ +R+ L+ + P +LL +T TKAAA E+ Sbjct: 78 VVAGPGSGKTTVIARRIGYLIAVRGVDPRSLLVITFTKAAADEL 121 >gi|171779530|ref|ZP_02920494.1| hypothetical protein STRINF_01375 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282147|gb|EDT47578.1| hypothetical protein STRINF_01375 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 783 Score = 35.4 bits (80), Expect = 7.5, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEI 85 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + + Sbjct: 38 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMRERAMAL 88 >gi|152965140|ref|YP_001360924.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216] gi|151359657|gb|ABS02660.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216] Length = 1128 Score = 35.4 bits (80), Expect = 7.6, Method: Composition-based stats. Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 3/52 (5%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMS 79 P V A AGSGKT + RV+ L+AN P +L LT T+ AA E++ Sbjct: 30 PVEPVLVVAGAGSGKTETMSSRVV-WLVANELVAPEDVLGLTFTRKAAGELA 80 >gi|33151764|ref|NP_873117.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP] gi|33147985|gb|AAP95506.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP] Length = 672 Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Query: 36 VSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 V A AGSGKT +++ ++ L+ N P + +T T AA E+ RV Sbjct: 20 VLAGAGSGKTRVIINKIAYLIAHCNYTPKQIAAVTFTNKAAREIRERV 67 >gi|153948778|ref|YP_001399172.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis IP 31758] gi|152960273|gb|ABS47734.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis IP 31758] Length = 673 Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 T V A AGSGKT ++ ++ L+ + P + +T T AA EM RV + + Sbjct: 15 TGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKYIAAVTFTNKAAREMKERVAQTL 71 >gi|37528484|ref|NP_931829.1| ATP-dependent DNA helicase Rep [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787922|emb|CAE17039.1| ATP-dependent DNA helicase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 675 Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 T V A AGSGKT ++ ++ L+ + P + +T T AA EM RV + + Sbjct: 15 TGPCLVLAGAGSGKTRVITNKIAHLIRTCGYQPRHIAAVTFTNKAAREMKERVAQTL 71 >gi|326565010|gb|EGE15210.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 103P14B1] gi|326574116|gb|EGE24064.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 101P30B1] Length = 689 Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAA 74 +S+ QL A + T+ V A AGSGKT ++ Q++ L+ P+ + +T T A Sbjct: 16 MSKLNPRQLEALNHTQGPLLVLAGAGSGKTSVITQKIAHLIENCRIPADRITAVTFTNKA 75 Query: 75 AAEMSHRVLEIIT 87 A EM RV +I++ Sbjct: 76 AREMKSRVQKILS 88 >gi|301156242|emb|CBW15713.1| exonuclease V (RecBCD complex), beta subunit [Haemophilus parainfluenzae T3T1] Length = 1226 Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust. Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 18/140 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT+ + LRLLL + +L +T T+ A ++ ++ E +T Sbjct: 21 IEASAGTGKTYTIGSIYLRLLLQAGENRFSRPLNVEEILVVTFTEMATEDLKRKIRERLT 80 Query: 88 A-------WSHLSDE-ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 A + D+ I + E + P D+ A L + + TIH F Sbjct: 81 AAISVFSEYYETKDKAIFTGEHQFLAELLPYLKDIPTALRRLKLAEQNLDLASIYTIHGF 140 Query: 140 CEAIMQQFPLEANITSHFAI 159 C ++ Q + + HF + Sbjct: 141 CRRMLMQHAFNSGV--HFNL 158 >gi|296113478|ref|YP_003627416.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis RH4] gi|295921172|gb|ADG61523.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis RH4] gi|326559400|gb|EGE09825.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 46P47B1] gi|326566037|gb|EGE16197.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 12P80B1] gi|326568114|gb|EGE18198.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis BC7] gi|326568531|gb|EGE18603.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis BC1] gi|326572434|gb|EGE22426.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis BC8] gi|326572519|gb|EGE22508.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis CO72] Length = 689 Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAA 74 +S+ QL A + T+ V A AGSGKT ++ Q++ L+ P+ + +T T A Sbjct: 16 MSKLNPRQLEALNHTQGPLLVLAGAGSGKTSVITQKIAHLIENCRIPADRITAVTFTNKA 75 Query: 75 AAEMSHRVLEIIT 87 A EM RV +I++ Sbjct: 76 AREMKSRVQKILS 88 >gi|291518979|emb|CBK74200.1| Superfamily I DNA and RNA helicases [Butyrivibrio fibrisolvens 16/4] Length = 770 Score = 35.0 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAA 76 + T E+++ + + ++V+A G+GKT+ L++++ ++ A P +L L T AA Sbjct: 165 ADTTQEEIIEAPLNQMSFVNAGPGTGKTYTLMRKITHMVENLEADPEGILVLCFTNAAVN 224 Query: 77 EMSHRV 82 E+ R+ Sbjct: 225 EIKARI 230 >gi|326576083|gb|EGE26002.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis O35E] Length = 689 Score = 35.0 bits (79), Expect = 7.9, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAA 74 +S+ QL A + T+ V A AGSGKT ++ Q++ L+ P+ + +T T A Sbjct: 16 MSKLNPRQLEALNHTQGPLLVLAGAGSGKTSVITQKIAHLIENCRIPADRITAVTFTNKA 75 Query: 75 AAEMSHRVLEIIT 87 A EM RV +I++ Sbjct: 76 AREMKSRVQKILS 88 >gi|194291146|ref|YP_002007053.1| DNA helicase and single-stranded DNA-dependent atpase [Cupriavidus taiwanensis LMG 19424] gi|193224981|emb|CAQ70992.1| DNA helicase and single-stranded DNA-dependent ATPase [Cupriavidus taiwanensis LMG 19424] Length = 698 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 V A AGSGKT ++ Q++ L+ P + +T T AA EM R+ +++ Sbjct: 22 VLAGAGSGKTRVITQKIAHLIEDKGFEPRHIAAVTFTNKAAKEMQERIAKLMEG 75 >gi|241204304|ref|YP_002975400.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858194|gb|ACS55861.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 972 Score = 35.0 bits (79), Expect = 8.0, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPST 64 ++++ +TI+ T ++L + V A AGSGKT ++ + L A P Sbjct: 189 TWKDFFDTIESKPLTPEQRLSVVVDEDATLVLAGAGSGKTSVITAKASYLAKAGIRQPEE 248 Query: 65 LLCLTHTKAAAAEMSHRV 82 +L L K AA EMS RV Sbjct: 249 ILLLAFAKNAAEEMSERV 266 >gi|219883159|ref|YP_002478321.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC 7425] gi|219867284|gb|ACL47622.1| Exonuclease RNase T and DNA polymerase III [Cyanothece sp. PCC 7425] Length = 812 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 13/86 (15%) Query: 2 IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61 +YH+ F+ I I + Q ++ A V AGSGKTH++++ LL +N Sbjct: 191 VYHSEFESLKSIIGDIKNDPNHQ------SKGAVVIGEAGSGKTHLMMRLARELLRSN-- 242 Query: 62 PSTLLCLTHTKAAAAEMSH---RVLE 84 LL + H A + + H R+LE Sbjct: 243 --RLLFIRHPNHADSVLYHTYARILE 266 >gi|284005618|ref|YP_003391438.1| UvrD/REP helicase [Spirosoma linguale DSM 74] gi|283820802|gb|ADB42639.1| UvrD/REP helicase [Spirosoma linguale DSM 74] Length = 966 Score = 35.0 bits (79), Expect = 8.1, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 25/47 (53%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 + A GSGKT LV R++RL+ L T T+ AA E+ RV Sbjct: 25 IIAGPGSGKTKTLVDRIVRLIQLGTPAENLFVATFTEKAAKELVTRV 71 >gi|117619432|ref|YP_858409.1| exodeoxyribonuclease V, beta subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560839|gb|ABK37787.1| exodeoxyribonuclease V, beta subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1205 Score = 35.0 bits (79), Expect = 8.1, Method: Composition-based stats. Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 32/141 (22%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN----------AHPST---------LLCLTHTKAAAA 76 + A+AG+GKT+ + LRLLL + PS +L +T T+AA A Sbjct: 18 IEASAGTGKTYTIAGLYLRLLLGHGPLIEEGADAGQPSAHERPLSVTEILVVTFTEAATA 77 Query: 77 EMSHRV------LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 E+ R+ + D +LS + +++ D A L+ Sbjct: 78 ELRGRIRGRIHEARLAFMRGESKDALLSQLLAEVE-------DHELAARRLLAAERQMDE 130 Query: 131 LKVQTIHAFCEAIMQQFPLEA 151 V TIH FC+ +++Q E+ Sbjct: 131 AAVFTIHGFCQRMLKQNAFES 151 >gi|306831468|ref|ZP_07464626.1| ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426253|gb|EFM29367.1| ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 771 Score = 35.0 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEI 85 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + + Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMRERAMAL 75 >gi|306833580|ref|ZP_07466707.1| ATP-dependent DNA helicase PcrA [Streptococcus bovis ATCC 700338] gi|304424350|gb|EFM27489.1| ATP-dependent DNA helicase PcrA [Streptococcus bovis ATCC 700338] Length = 771 Score = 35.0 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEI 85 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + + Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMRERAMAL 75 >gi|303237389|ref|ZP_07323959.1| UvrD/REP helicase [Prevotella disiens FB035-09AN] gi|302482776|gb|EFL45801.1| UvrD/REP helicase [Prevotella disiens FB035-09AN] Length = 1112 Score = 35.0 bits (79), Expect = 8.3, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 12/129 (9%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L + LL+ + + +L +T T A EM R+L + ++ + Sbjct: 13 ASAGSGKTFTLAVEYISLLVKDPNNYRQILAVTFTNKATQEMKMRILSQLFG---IAKGL 69 Query: 97 LSAEITKIQGKKPNKSDM------SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 S++ Q K NK+ + S A L ++ ++ TI AF + I++ E Sbjct: 70 KSSDAYLQQVK--NKTGLNEATIKSNATTALTLLIHKYNEFRIHTIDAFFQQILRNLAHE 127 Query: 151 ANITSHFAI 159 +T++ + Sbjct: 128 LGLTANLKV 136 >gi|288905388|ref|YP_003430610.1| ATP-dependent DNA helicase (DNA helicase II) [Streptococcus gallolyticus UCN34] gi|325978377|ref|YP_004288093.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732114|emb|CBI13679.1| Putative ATP-dependent DNA helicase (DNA helicase II) [Streptococcus gallolyticus UCN34] gi|325178305|emb|CBZ48349.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 771 Score = 35.0 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEI 85 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + + Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAITFTNKAAREMRERAMAL 75 >gi|255319912|ref|ZP_05361113.1| helicase, UvrD/Rep family [Acinetobacter radioresistens SK82] gi|262379193|ref|ZP_06072349.1| ATP-dependent DNA helicase Rep [Acinetobacter radioresistens SH164] gi|255303045|gb|EET82261.1| helicase, UvrD/Rep family [Acinetobacter radioresistens SK82] gi|262298650|gb|EEY86563.1| ATP-dependent DNA helicase Rep [Acinetobacter radioresistens SH164] Length = 679 Score = 35.0 bits (79), Expect = 8.4, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Query: 18 SQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAA 75 SQ ++QL A T+ V A AGSGKT ++ +++ L+ P+ + +T T AA Sbjct: 5 SQLNNKQLEAMKYTQGPLLVLAGAGSGKTSVITRKIAYLIQQCRIPAHRITAMTFTNKAA 64 Query: 76 AEMSHRVLEIIT 87 EM RV ++++ Sbjct: 65 REMKERVGKLLS 76 >gi|299142339|ref|ZP_07035471.1| ATP-dependent DNA helicase [Prevotella oris C735] gi|298576061|gb|EFI47935.1| ATP-dependent DNA helicase [Prevotella oris C735] Length = 906 Score = 35.0 bits (79), Expect = 8.4, Method: Composition-based stats. Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 6/50 (12%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRV 82 V A+ G GKT IL +RV + A+AH +LCLT T AA M RV Sbjct: 24 VLASPGCGKTQILAERVAQ---AHAHGVDFGDMLCLTFTNRAARSMQERV 70 >gi|323697653|ref|ZP_08109565.1| UvrD/REP helicase [Desulfovibrio sp. ND132] gi|323457585|gb|EGB13450.1| UvrD/REP helicase [Desulfovibrio desulfuricans ND132] Length = 1049 Score = 35.0 bits (79), Expect = 8.5, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 15/68 (22%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLC---------------LTHTKAAAAEMSH 80 V A+AGSGKT+ L +R L LL + +C +T T AAAEM Sbjct: 7 VKASAGSGKTYQLTRRFLALLDRAGEDTPFVCTNRPGRGFSWPEIMAVTFTNKAAAEMKE 66 Query: 81 RVLEIITA 88 RV+ + A Sbjct: 67 RVVTGLKA 74 >gi|187477915|ref|YP_785939.1| DNA helicase II [Bordetella avium 197N] gi|115422501|emb|CAJ49026.1| DNA helicase II [Bordetella avium 197N] Length = 750 Score = 35.0 bits (79), Expect = 8.5, Method: Composition-based stats. Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 34 AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 A V A AGSGKT +L R+ L+ A P +L +T T AA EM R+ Sbjct: 21 ALVLAGAGSGKTRVLTTRMAWLIQTGQASPFGILAVTFTNKAAREMLMRM 70 >gi|50084109|ref|YP_045619.1| ATP-dependent DNA helicase [Acinetobacter sp. ADP1] gi|49530085|emb|CAG67797.1| ATP-dependent DNA helicase [Acinetobacter sp. ADP1] Length = 679 Score = 35.0 bits (79), Expect = 8.6, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEIIT 87 V A AGSGKT ++ Q++ L+ P+ + +T T AA EM RV ++++ Sbjct: 24 VLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAAREMKERVAKLLS 76 >gi|46128055|ref|XP_388581.1| hypothetical protein FG08405.1 [Gibberella zeae PH-1] Length = 1060 Score = 35.0 bits (79), Expect = 8.7, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74 L S ++++ + + + A GSGKTH L RV+ L+ + PS ++ T T A Sbjct: 10 LQSLNEAQRRAVTSTASTVAILAGPGSGKTHTLTSRVVWLIQRVGYRPSDVIVATFTVKA 69 Query: 75 AAEMSHRV 82 A EM R+ Sbjct: 70 AREMKERI 77 >gi|254292798|ref|YP_003058821.1| UvrD/REP helicase [Hirschia baltica ATCC 49814] gi|254041329|gb|ACT58124.1| UvrD/REP helicase [Hirschia baltica ATCC 49814] Length = 793 Score = 35.0 bits (79), Expect = 8.7, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 D + +EQ A + T A V A AG+GKT +L R+ +L A S L +T T Sbjct: 29 DYLDGLNAEQRDAVETTDGALLVLAGAGTGKTRVLTTRLAHILNQRKAWASQTLTVTFTN 88 Query: 73 AAAAEMSHRVLEII 86 AA EM R ++I Sbjct: 89 KAAREMRERAEKLI 102 >gi|221069391|ref|ZP_03545496.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni KF-1] gi|220714414|gb|EED69782.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni KF-1] Length = 1270 Score = 35.0 bits (79), Expect = 8.7, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 15/149 (10%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVL 83 S + A+AG+GKT + LRL+L + P +L +T T+AA E+S R+ Sbjct: 25 SRLIEASAGTGKTWTIAALYLRLVLGHGAENGFARALMPPDILVMTFTRAATRELSDRIR 84 Query: 84 E-IITAWSHLSDEILSAE----ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + +I A E A + ++ ++ A L + + TI A Sbjct: 85 DRLIEAVQCFRGEAEPAAHDSFLRDLRDAYAEGTERDTAAWRLDMAAQCMDDAAIHTIDA 144 Query: 139 FCEAIMQQFPLEA-NITSHFAIADEEQSK 166 +C+ ++++ ++ N+ ADE Q + Sbjct: 145 WCQRMLREHAFDSGNLFDETLEADESQRQ 173 >gi|78484473|ref|YP_390398.1| DNA-dependent helicase II [Thiomicrospira crunogena XCL-2] gi|78362759|gb|ABB40724.1| ATP-dependent DNA helicase UvrD [Thiomicrospira crunogena XCL-2] Length = 741 Score = 35.0 bits (79), Expect = 8.7, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86 + A + A AGSGKT +LV R+ L + +L +T T AA+EM RV +I Sbjct: 23 QHALILAGAGSGKTRVLVHRIAWLTQVMGFSAYNILAVTFTNKAASEMRARVEALI 78 >gi|331004225|ref|ZP_08327704.1| hypothetical protein HMPREF0491_02566 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411498|gb|EGG90909.1| hypothetical protein HMPREF0491_02566 [Lachnospiraceae oral taxon 107 str. F0167] Length = 735 Score = 35.0 bits (79), Expect = 8.8, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A AGSGKT +L+ R+ L+ + P ++ +T T AA EM R+ ++I Sbjct: 27 AGAGSGKTGVLMHRIAYLIEEKHIDPYNIMAITFTNKAAKEMKERIGKLI 76 >gi|2462092|emb|CAA72103.1| ATP-dependent nuclease subunit A [Bacillus cereus ATCC 10987] Length = 254 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 22/115 (19%) Query: 57 LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116 LA LL +T T AAA EM +R+ E + K+ +P + K Sbjct: 1 LACLQVDRLLVVTFTNAAAQEMKNRIGEALE---------------KVLIDEPGSQHIRK 45 Query: 117 ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 LL + TIH+FC +++ + ++ F IA++ +++ L EE Sbjct: 46 QLSLL-------NKASISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEE 93 >gi|121998487|ref|YP_001003274.1| UvrD/REP helicase [Halorhodospira halophila SL1] gi|121589892|gb|ABM62472.1| UvrD/REP helicase [Halorhodospira halophila SL1] Length = 695 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 32/63 (50%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T ++ + P A VSA AGSGKT LV RV+ LL A + + L ++A + Sbjct: 4 TPEQRQVIEHPGGHARVSAAAGSGKTATLVARVVELLRRGADSARIRVLMFNRSAREDFE 63 Query: 80 HRV 82 R+ Sbjct: 64 RRL 66 >gi|302524415|ref|ZP_07276757.1| ATP-dependent DNA helicase [Streptomyces sp. AA4] gi|302433310|gb|EFL05126.1| ATP-dependent DNA helicase [Streptomyces sp. AA4] Length = 1124 Score = 35.0 bits (79), Expect = 9.0, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA--HPSTLL 66 E ++ + L T + + + P + V A AG+GKT + RV+ L+AN P +L Sbjct: 14 EIADALGLHRPTPEQATVIASPVEPSLVVAGAGAGKTETMAARVV-WLVANGIVSPERVL 72 Query: 67 CLTHTKAAAAEM 78 LT T+ AA ++ Sbjct: 73 GLTFTRKAARQL 84 >gi|238021168|ref|ZP_04601594.1| hypothetical protein GCWU000324_01066 [Kingella oralis ATCC 51147] gi|237868148|gb|EEP69154.1| hypothetical protein GCWU000324_01066 [Kingella oralis ATCC 51147] Length = 666 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRV 82 +V A AGSGKT ++ +++ ++ A P + +T T AA EM RV Sbjct: 19 FVLAGAGSGKTRVITEKIAYMITQAGYKPHHIAAITFTNKAAKEMQERV 67 >gi|226326730|ref|ZP_03802248.1| hypothetical protein PROPEN_00588 [Proteus penneri ATCC 35198] gi|225204951|gb|EEG87305.1| hypothetical protein PROPEN_00588 [Proteus penneri ATCC 35198] Length = 519 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVLEII 86 V A AGSGKT ++ ++ L+ +P+ + +T T AA EM RV + + Sbjct: 26 VLAGAGSGKTRVITHKIAHLIRQCQYPAKQIAAVTFTNKAAREMKERVAQTL 77 >gi|261401620|ref|ZP_05987745.1| exodeoxyribonuclease V, beta subunit [Neisseria lactamica ATCC 23970] gi|269208325|gb|EEZ74780.1| exodeoxyribonuclease V, beta subunit [Neisseria lactamica ATCC 23970] Length = 1204 Score = 35.0 bits (79), Expect = 9.1, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 24/158 (15%) Query: 36 VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR-------VLEIIT 87 + A+AG+GKT+ + RL+ L +L +T TKAA AE+ R VL+++ Sbjct: 21 IEASAGTGKTYGIAALFTRLIVLEQKSVERVLVVTFTKAATAELKTRLRARLDNVLQVLE 80 Query: 88 A--WSHLSDEILSAEITKIQGKKP----------NKSDMSKARHLLITILETPGG----L 131 + + L D+ LS I + ++ + R LI L+ G Sbjct: 81 SKEIAKLGDDTLSDGIAAYCAEHHEGDTFLPELLKQALQKEGRTRLIVRLKAAIGQFDNA 140 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + L+ Sbjct: 141 AIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLV 178 >gi|325298044|ref|YP_004257961.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170] gi|324317597|gb|ADY35488.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170] Length = 1071 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 67/139 (48%), Gaps = 24/139 (17%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLE--------II 86 A+AGSGKT L ++ L+ + P+ +L +T T A AEM +R+LE + Sbjct: 12 ASAGSGKTFTLALHYIKQLVED--PTAYRHILAVTFTNKATAEMKNRILEQLYGLGYGLP 69 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM-- 144 T+ S+L + + ++ + ++ A L I+ +++TI +F +A++ Sbjct: 70 TSKSYLQELKKTCALSDTEIRQ-------AAIRALHNIIHDYSRFRIETIDSFFQAVLRN 122 Query: 145 --QQFPLEANITSHFAIAD 161 ++ L AN+T AD Sbjct: 123 LARELELGANMTIELNNAD 141 >gi|116627783|ref|YP_820402.1| superfamily I DNA/RNA helicase [Streptococcus thermophilus LMD-9] gi|116101060|gb|ABJ66206.1| ATP-dependent DNA helicase PcrA [Streptococcus thermophilus LMD-9] Length = 770 Score = 35.0 bits (79), Expect = 9.5, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + + A S Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAITFTNKAAREMRERAVALNPATS 80 >gi|83643128|ref|YP_431563.1| exodeoxyribonuclease V subunit beta [Hahella chejuensis KCTC 2396] gi|83631171|gb|ABC27138.1| exodeoxyribonuclease V, beta subunit [Hahella chejuensis KCTC 2396] Length = 1181 Score = 35.0 bits (79), Expect = 9.5, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 11/146 (7%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEM----SHRVLEIITAWS 90 + A+AG+GKT+ + LRLLL +L +T T+AA E+ R+ E++ Sbjct: 17 IEASAGTGKTYTITTLYLRLLLERQLDVRQILVVTFTRAATEELRTRIRQRIREVMQTLQ 76 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + ++ + + + N ++ + L+ + E + TIH FC+ +Q E Sbjct: 77 APPETDIAEWLQPWRDPERNGDALALLQQALLNMDEA----SIFTIHGFCQRALQDNAFE 132 Query: 151 ANITSHFAIADEEQSKKLIEEAKKST 176 + + F + +E L+++A + T Sbjct: 133 SGLL--FDLRLQEDLGPLLQQAAEDT 156 >gi|312278340|gb|ADQ62997.1| ATP-dependent DNA helicase PcrA [Streptococcus thermophilus ND03] Length = 770 Score = 35.0 bits (79), Expect = 9.6, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + A AGSGKT +L R+ L+ +P +L +T T AA EM R + + A S Sbjct: 25 IMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAITFTNKAAREMRERAVALNPATS 80 >gi|145589895|ref|YP_001156492.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048301|gb|ABP34928.1| ATP-dependent DNA helicase UvrD [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 787 Score = 35.0 bits (79), Expect = 9.7, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 +SA + A AGSGKT +L R+ L+ P +L +T T AA EM R+ Sbjct: 29 QSALILAGAGSGKTRVLTTRIAWLIQTGQVSPIGVLAVTFTNKAAKEMMVRL 80 >gi|332159790|ref|YP_004296367.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664020|gb|ADZ40664.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 674 Score = 35.0 bits (79), Expect = 9.9, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 T V A AGSGKT ++ ++ L+ + P + +T T AA EM RV + + Sbjct: 15 TGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREMKERVAQTL 71 >gi|123440560|ref|YP_001004554.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087521|emb|CAL10302.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 674 Score = 35.0 bits (79), Expect = 10.0, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEII 86 T V A AGSGKT ++ ++ L+ + P + +T T AA EM RV + + Sbjct: 15 TGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREMKERVAQTL 71 Searching..................................................done Results from round 2 >gi|315122046|ref|YP_004062535.1| double-strand break repair helicase AddA [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495448|gb|ADR52047.1| double-strand break repair helicase AddA [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 1179 Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats. Identities = 161/237 (67%), Positives = 193/237 (81%), Gaps = 1/237 (0%) Query: 1 MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60 M++ NS Q +S D I+ TKS+QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL+ A Sbjct: 1 MMHLNSSQNNSNITDWITWTKSQQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLSGA 60 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 +PS LLCLTHTK AAAEMSHRV EIIT WSHLSDE LS EITKIQG K N+SD+SKAR L Sbjct: 61 NPSALLCLTHTKEAAAEMSHRVFEIITEWSHLSDEQLSVEITKIQGIKQNESDISKARLL 120 Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 L+ ILETP GLKVQTIH+FCE++++QFPLE+NIT F++ D +QSKK IEEAKKST+ASI Sbjct: 121 LVKILETPNGLKVQTIHSFCESLIRQFPLESNITGDFSVLDGDQSKKPIEEAKKSTIASI 180 Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEK 236 +LD+N E K+AF +IL ND ++E L+SDIISNR+AL + F SY K+++ Sbjct: 181 LLDDNVEFKQAFDDILNSYNDINLEDLMSDIISNRSALNRFSSFAKSYGGEEKLLKD 237 >gi|222147062|ref|YP_002548019.1| ATP-dependant DNA helicase [Agrobacterium vitis S4] gi|221734052|gb|ACM35015.1| ATP-dependant DNA helicase [Agrobacterium vitis S4] Length = 1182 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 112/224 (50%), Positives = 160/224 (71%), Gaps = 3/224 (1%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 D I T +Q LASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS++LCLT+TKAA Sbjct: 12 DPIDWTTRQQSLASDPARSAWVSANAGSGKTHVLTQRVIRLLLAGARPSSILCLTYTKAA 71 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EMS+RV + + W+ LSDE LS I I+ + P++ +++AR L LETPGGLK+Q Sbjct: 72 ASEMSNRVFDRLAEWATLSDEELSRRIETIERRPPDRMKIAEARRLFARALETPGGLKIQ 131 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TIHAFCEA++ QFPLEAN+ HF++ D+ + L+ +A++S L + +++ L +AF E Sbjct: 132 TIHAFCEALLHQFPLEANVAGHFSVLDDRAASVLLADARRSLLTATAAEDDANLAEAFAE 191 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +L + ++ +E L+SDI+SNR A++ F + R+ +E +L Sbjct: 192 VLSLGDEFGLENLLSDIVSNRHAVR---GFLAVARRKGGVESAL 232 >gi|222084227|ref|YP_002542753.1| double-strand break repair helicase AddA [Agrobacterium radiobacter K84] gi|221721675|gb|ACM24831.1| double-strand break repair helicase AddA [Agrobacterium radiobacter K84] Length = 1188 Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats. Identities = 111/224 (49%), Positives = 161/224 (71%), Gaps = 3/224 (1%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+ Sbjct: 22 IGWTTVQQSIASDPERSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 81 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS+RV + + AW+ LSDE L A I +I+G +P+ +++AR L LETPGGLK+QTI Sbjct: 82 EMSNRVFDRLAAWATLSDEELKARIAEIEGAEPDLFKLAEARRLFAKALETPGGLKIQTI 141 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ + L+++A++S LA+ + EL +AF +L Sbjct: 142 HAFCEALLHQFPLEANVAGHFSVLDDRAAATLLDDARRSLLAATTPQRDAELAEAFSYVL 201 Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWS 240 ++ ++ +ETL+ DI++ R A++ F + R+ I+ +L + Sbjct: 202 DLGDESGLETLLGDIVAKRNAIRR---FTTDAERKGGIDAALLA 242 >gi|209551530|ref|YP_002283447.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537286|gb|ACI57221.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1183 Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats. Identities = 104/203 (51%), Positives = 148/203 (72%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+ Sbjct: 17 IGWTTIQQAIASDPERSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 76 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS+RV E + W L DE LS IT+I+G P+ +++AR L LETPGGLK+QTI Sbjct: 77 EMSNRVFERLADWVVLDDEDLSRRITQIEGAAPDGIKLAEARRLFAKALETPGGLKIQTI 136 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ ++ L+ +A+++ L + + + L +AF +L Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAEALLSDARRALLTATAPEGDSTLAEAFAYVL 196 Query: 197 EISNDEDIETLISDIISNRTALK 219 ++ ++ +E L+ DI++NR A++ Sbjct: 197 DLGDESGLENLLGDIVANRNAIR 219 >gi|241206969|ref|YP_002978065.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860859|gb|ACS58526.1| double-strand break repair helicase AddA [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1183 Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats. Identities = 103/203 (50%), Positives = 145/203 (71%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLL+ A PS +LCLT+TKAAA+ Sbjct: 17 IGWTTIQQAIASDPLRSAWVSANAGSGKTHVLTQRVIRLLLSGARPSAILCLTYTKAAAS 76 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS+RV E + W L DE L IT+I+G P+ +++AR L LETPGGLK+QTI Sbjct: 77 EMSNRVFERLAEWVVLDDEDLGRRITQIEGMAPDGLKLAEARRLFAKALETPGGLKIQTI 136 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ + L+ +A+++ L + D + L +AF +L Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAVALLSDARRALLTATAPDEDSALSEAFAYVL 196 Query: 197 EISNDEDIETLISDIISNRTALK 219 + ++ +E L+ DI++NR A++ Sbjct: 197 NLGDESGLENLLGDIVANRNAIR 219 >gi|116249792|ref|YP_765630.1| ATP-dependent UvrD family DNA helicase [Rhizobium leguminosarum bv. viciae 3841] gi|115254440|emb|CAK05514.1| putative ATP-dependent UvrD family DNA helicase [Rhizobium leguminosarum bv. viciae 3841] Length = 1183 Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats. Identities = 104/203 (51%), Positives = 146/203 (71%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLL+ A PS +LCLT+TKAAA+ Sbjct: 17 IGWTTIQQAIASDPLRSAWVSANAGSGKTHVLTQRVIRLLLSGARPSAILCLTYTKAAAS 76 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS+RV E + W L DE LS IT+I+G P+ +++AR L LETPGGLK+QTI Sbjct: 77 EMSNRVFERLAEWVVLDDEDLSRRITQIEGMAPDGLKLAEARRLFAKALETPGGLKIQTI 136 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ + L+ +A+++ L + D + L +AF +L Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAVALLSDARRALLTATAPDEDSALAEAFAYVL 196 Query: 197 EISNDEDIETLISDIISNRTALK 219 + ++ +E L+ DI++NR A++ Sbjct: 197 NLGDESGLENLLGDIVANRNAIR 219 >gi|159184128|ref|NP_353063.2| ATP-dependant DNA helicase [Agrobacterium tumefaciens str. C58] gi|159139465|gb|AAK85848.2| ATP-dependant DNA helicase [Agrobacterium tumefaciens str. C58] Length = 1185 Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats. Identities = 105/203 (51%), Positives = 148/203 (72%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T + Q LASDP SAWVSANAGSGKTH+L QRV+RLLLA PS +LCLT+TKAAA+ Sbjct: 19 IDWTSARQRLASDPASSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAAS 78 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS RV + + W+ L D L IT I+GK P++ +++AR L LETPGGLK+QTI Sbjct: 79 EMSSRVFDRLAEWATLPDSDLKDRITTIEGKVPDRIKLAEARRLFAKALETPGGLKIQTI 138 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ + L+ EA++S L ++ +++ EL +A +L Sbjct: 139 HAFCEALLHQFPLEANVAGHFSVLDDRAATTLLAEARRSLLTAVSTEDDAELVQALAYVL 198 Query: 197 EISNDEDIETLISDIISNRTALK 219 +++++ +E L+S II+NR+AL+ Sbjct: 199 DLADESGLEALLSAIIANRSALR 221 >gi|86355694|ref|YP_467586.1| nuclease/helicase protein, ATP dependent [Rhizobium etli CFN 42] gi|45505284|gb|AAS67014.1| AddA [Rhizobium etli] gi|86279796|gb|ABC88859.1| probable nuclease/helicase protein, ATP dependent [Rhizobium etli CFN 42] Length = 1183 Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats. Identities = 108/222 (48%), Positives = 151/222 (68%), Gaps = 3/222 (1%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+ Sbjct: 17 IGWTTIQQAIASDPERSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 76 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS+RV E + W L DE LS I +I+G P+ +++AR L LETPGGLK+QTI Sbjct: 77 EMSNRVFERLADWVVLDDEDLSRRIMQIEGTAPDALKLAEARRLFAKALETPGGLKIQTI 136 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ + L+ +A+++ L + L +AF +L Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAAALLSDARRALLTATAPVEGSALAEAFAYVL 196 Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 + ++ +E L++DI++NR A++ F + RR +E L Sbjct: 197 NLGDESGLENLLADIVANRNAIRR---FTTAAERRGGVEAVL 235 >gi|325291476|ref|YP_004277340.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3] gi|325059329|gb|ADY63020.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3] Length = 1185 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 100/203 (49%), Positives = 146/203 (71%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T Q LASDP SAWVSANAGSGKTH+L QRV+RLLLA PS +LCLT+TKAAA+ Sbjct: 19 IDWTSDRQRLASDPASSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAAS 78 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS RV + + W+ L D L + I+GK P++ +++AR L LETPGGLK+QTI Sbjct: 79 EMSSRVFDRLAEWATLPDNDLGDRVAAIEGKMPDRIKLAEARRLFAKALETPGGLKIQTI 138 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ + L+ EA++S L ++ + + +L ++ +L Sbjct: 139 HAFCEALLHQFPLEANVAGHFSVLDDRAATTLLAEARRSLLTAVSTEGDTDLTQSLAYVL 198 Query: 197 EISNDEDIETLISDIISNRTALK 219 +++++ +E+L++ II+NR+AL+ Sbjct: 199 DLADESGLESLLTAIIANRSALR 221 >gi|218682571|ref|ZP_03530172.1| ATP-dependent UvrD family DNA helicase [Rhizobium etli CIAT 894] Length = 415 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 104/203 (51%), Positives = 147/203 (72%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+ Sbjct: 20 IGWTTIQQAIASDPERSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 79 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS+RV E + W L DE LS IT+I+G P+ +++AR L LETPGGLK+QTI Sbjct: 80 EMSNRVFERLADWVVLDDEDLSRRITQIEGTAPDAIKLAEARRLFAKALETPGGLKIQTI 139 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ + L+ +A+++ L + + + L +AF +L Sbjct: 140 HAFCEALLHQFPLEANVAGHFSVLDDRAAAALLSDARRALLTATAPEADSALAEAFAYVL 199 Query: 197 EISNDEDIETLISDIISNRTALK 219 ++ ++ +E L+ DI++NR A++ Sbjct: 200 DLGDESGLENLLGDIVANRNAIR 222 >gi|254502806|ref|ZP_05114957.1| double-strand break repair helicase AddA [Labrenzia alexandrii DFL-11] gi|222438877|gb|EEE45556.1| double-strand break repair helicase AddA [Labrenzia alexandrii DFL-11] Length = 1180 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 89/200 (44%), Positives = 131/200 (65%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T+ Q LAS P SAWVSANAGSGKT +L +RV+RLLL PS +L LT TKAAAAEM+ Sbjct: 19 TRQRQDLASRPRASAWVSANAGSGKTFVLSRRVVRLLLDGTDPSRILALTFTKAAAAEMA 78 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV +I+ W + D L+ E+ +I+G+ P+ + ++ AR L LETPGGLK+QTIH F Sbjct: 79 TRVFKILGTWVTMDDADLAKELFEIEGRHPDAARIAMARRLFARALETPGGLKIQTIHGF 138 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 CEA++ QFPLEAN+ HF + D+ + +L+ EA+ S L ++ + +A ++++ Sbjct: 139 CEALLHQFPLEANVAGHFNVLDDRIAAELMAEARASVLHKAEMEPDSPFGQALASVIDLM 198 Query: 200 NDEDIETLISDIISNRTALK 219 +D + + ++I NR A + Sbjct: 199 SDGGAQKALDELIQNRDAFR 218 >gi|227823893|ref|YP_002827866.1| DNA helicase (double-strand break repair), AddA type [Sinorhizobium fredii NGR234] gi|227342895|gb|ACP27113.1| DNA helicase (double-strand break repair), AddA type [Sinorhizobium fredii NGR234] Length = 1189 Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats. Identities = 99/203 (48%), Positives = 142/203 (69%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + T Q LASDP RSAWVSANAGSGKTH+L QRV+RLLLA PS +LCLT+TKAAA+ Sbjct: 17 LDWTTERQSLASDPARSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAAS 76 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS+R+ E + W+ L D L I I+GK+P + + +AR L LETPGGLK+QTI Sbjct: 77 EMSNRIFERLAEWATLDDAALEKRIETIEGKRPPLAKIHEARRLFAKALETPGGLKIQTI 136 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAF EA++ QFPLEAN+ HF++ D+ + L+ +A+++ L++ + EL +AF +L Sbjct: 137 HAFSEALLHQFPLEANVAGHFSVLDDRAAAVLLADARRALLSATAAEGETELAEAFATVL 196 Query: 197 EISNDEDIETLISDIISNRTALK 219 ++++D +E L+ I++NR ++ Sbjct: 197 DLADDTGLEKLLQAIVANRAPIQ 219 >gi|254705105|ref|ZP_05166933.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str. 686] gi|261755810|ref|ZP_05999519.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str. 686] gi|261745563|gb|EEY33489.1| double-strand break repair helicase AddA [Brucella suis bv. 3 str. 686] Length = 1180 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 91/204 (44%), Positives = 134/204 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213 >gi|23502951|ref|NP_699078.1| UvrD/Rep family helicase [Brucella suis 1330] gi|161620015|ref|YP_001593902.1| double-strand break repair helicase AddA [Brucella canis ATCC 23365] gi|260567425|ref|ZP_05837895.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40] gi|23348986|gb|AAN30993.1| helicase, UvrD/Rep family [Brucella suis 1330] gi|161336826|gb|ABX63131.1| double-strand break repair helicase AddA [Brucella canis ATCC 23365] gi|260156943|gb|EEW92023.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40] Length = 1180 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 91/204 (44%), Positives = 134/204 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213 >gi|256370501|ref|YP_003108012.1| double-strand break repair helicase AddA [Brucella microti CCM 4915] gi|256000664|gb|ACU49063.1| double-strand break repair helicase AddA [Brucella microti CCM 4915] Length = 1180 Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats. Identities = 91/204 (44%), Positives = 134/204 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213 >gi|254470933|ref|ZP_05084336.1| double-strand break repair helicase AddA [Pseudovibrio sp. JE062] gi|211960075|gb|EEA95272.1| double-strand break repair helicase AddA [Pseudovibrio sp. JE062] Length = 1156 Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats. Identities = 97/225 (43%), Positives = 147/225 (65%), Gaps = 6/225 (2%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 +D+ ++T Q A+ P SAWVSANAGSGKT +L +RV+RLLL+ PS +LCLT TKA Sbjct: 1 MDIPAKTLDSQQRAAHPENSAWVSANAGSGKTFVLARRVVRLLLSGTDPSRILCLTFTKA 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM+ RV + + W+ LSD L+AEI I+G+ + ++ AR L LETPGGLK+ Sbjct: 61 AAAEMATRVFDSLAKWTQLSDAELAAEIEDIEGRPTSPKQLANARRLFAKALETPGGLKI 120 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 QTIHAFCEA++ QFPLEAN+ HF++ D+ +++L+ EA+ S L ++ ++ A Sbjct: 121 QTIHAFCEALLHQFPLEANVAGHFSVLDDRLAEELLNEARASILHRAEIEPESDIGSALS 180 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +++E+ D +E +S++IS R A F+ ++ +E ++ Sbjct: 181 QLIELLPDSGVEKALSELISRRDA------FYRWVAPYGDLESAV 219 >gi|306842786|ref|ZP_07475427.1| double-strand break repair helicase AddA [Brucella sp. BO2] gi|306287059|gb|EFM58567.1| double-strand break repair helicase AddA [Brucella sp. BO2] Length = 1180 Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats. Identities = 91/204 (44%), Positives = 134/204 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213 >gi|148560369|ref|YP_001259904.1| double-strand break repair helicase AddA [Brucella ovis ATCC 25840] gi|148371626|gb|ABQ61605.1| double-strand break repair helicase AddA [Brucella ovis ATCC 25840] Length = 1180 Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats. Identities = 91/204 (44%), Positives = 134/204 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213 >gi|225853531|ref|YP_002733764.1| double-strand break repair helicase AddA [Brucella melitensis ATCC 23457] gi|254700733|ref|ZP_05162561.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str. 513] gi|254709079|ref|ZP_05170890.1| double-strand break repair helicase AddA [Brucella pinnipedialis B2/94] gi|256030604|ref|ZP_05444218.1| double-strand break repair helicase AddA [Brucella pinnipedialis M292/94/1] gi|256045706|ref|ZP_05448584.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1 str. Rev.1] gi|256262985|ref|ZP_05465517.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9] gi|260563008|ref|ZP_05833494.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M] gi|261316580|ref|ZP_05955777.1| double-strand break repair helicase AddA [Brucella pinnipedialis B2/94] gi|261751245|ref|ZP_05994954.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str. 513] gi|265987652|ref|ZP_06100209.1| double-strand break repair helicase AddA [Brucella pinnipedialis M292/94/1] gi|265992127|ref|ZP_06104684.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1 str. Rev.1] gi|225641896|gb|ACO01810.1| double-strand break repair helicase AddA [Brucella melitensis ATCC 23457] gi|260153024|gb|EEW88116.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M] gi|261295803|gb|EEX99299.1| double-strand break repair helicase AddA [Brucella pinnipedialis B2/94] gi|261740998|gb|EEY28924.1| double-strand break repair helicase AddA [Brucella suis bv. 5 str. 513] gi|263003193|gb|EEZ15486.1| double-strand break repair helicase AddA [Brucella melitensis bv. 1 str. Rev.1] gi|263092858|gb|EEZ17033.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9] gi|264659849|gb|EEZ30110.1| double-strand break repair helicase AddA [Brucella pinnipedialis M292/94/1] gi|326410100|gb|ADZ67165.1| double-strand break repair helicase AddA [Brucella melitensis M28] gi|326539817|gb|ADZ88032.1| double-strand break repair helicase AddA [Brucella melitensis M5-90] Length = 1180 Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats. Identities = 91/204 (44%), Positives = 134/204 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213 >gi|254694724|ref|ZP_05156552.1| double-strand break repair helicase AddA [Brucella abortus bv. 3 str. Tulya] gi|261215053|ref|ZP_05929334.1| double-strand break repair helicase AddA [Brucella abortus bv. 3 str. Tulya] gi|260916660|gb|EEX83521.1| double-strand break repair helicase AddA [Brucella abortus bv. 3 str. Tulya] Length = 1180 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 91/204 (44%), Positives = 134/204 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213 >gi|294851330|ref|ZP_06792003.1| double-strand break repair helicase AddA [Brucella sp. NVSL 07-0026] gi|294819919|gb|EFG36918.1| double-strand break repair helicase AddA [Brucella sp. NVSL 07-0026] Length = 1180 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 91/204 (44%), Positives = 134/204 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213 >gi|225626478|ref|ZP_03784517.1| double-strand break repair helicase AddA [Brucella ceti str. Cudo] gi|256158600|ref|ZP_05456490.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1] gi|256254011|ref|ZP_05459547.1| double-strand break repair helicase AddA [Brucella ceti B1/94] gi|260169510|ref|ZP_05756321.1| double-strand break repair helicase AddA [Brucella sp. F5/99] gi|261221152|ref|ZP_05935433.1| double-strand break repair helicase AddA [Brucella ceti B1/94] gi|261759038|ref|ZP_06002747.1| UvrD/REP helicase [Brucella sp. F5/99] gi|265997112|ref|ZP_06109669.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1] gi|225618135|gb|EEH15178.1| double-strand break repair helicase AddA [Brucella ceti str. Cudo] gi|260919736|gb|EEX86389.1| double-strand break repair helicase AddA [Brucella ceti B1/94] gi|261739022|gb|EEY27018.1| UvrD/REP helicase [Brucella sp. F5/99] gi|262551580|gb|EEZ07570.1| double-strand break repair helicase AddA [Brucella ceti M490/95/1] Length = 1180 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 91/204 (44%), Positives = 134/204 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213 >gi|306837652|ref|ZP_07470521.1| double-strand break repair helicase AddA [Brucella sp. NF 2653] gi|306407210|gb|EFM63420.1| double-strand break repair helicase AddA [Brucella sp. NF 2653] Length = 1180 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 91/204 (44%), Positives = 134/204 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213 >gi|256060066|ref|ZP_05450248.1| ATP-dependent nuclease subunit A [Brucella neotomae 5K33] gi|261324043|ref|ZP_05963240.1| double-strand break repair helicase AddA [Brucella neotomae 5K33] gi|261300023|gb|EEY03520.1| double-strand break repair helicase AddA [Brucella neotomae 5K33] Length = 1180 Score = 234 bits (596), Expect = 1e-59, Method: Composition-based stats. Identities = 91/204 (44%), Positives = 134/204 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFIRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213 >gi|306843520|ref|ZP_07476121.1| double-strand break repair helicase AddA [Brucella sp. BO1] gi|306276211|gb|EFM57911.1| double-strand break repair helicase AddA [Brucella sp. BO1] Length = 1180 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 90/204 (44%), Positives = 133/204 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L D L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDAALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213 >gi|62290945|ref|YP_222738.1| UvrD/Rep family helicase [Brucella abortus bv. 1 str. 9-941] gi|82700856|ref|YP_415430.1| UvrD/REP helicase [Brucella melitensis biovar Abortus 2308] gi|189025157|ref|YP_001935925.1| UvrD/REP helicase [Brucella abortus S19] gi|237816450|ref|ZP_04595443.1| double-strand break repair helicase AddA [Brucella abortus str. 2308 A] gi|254690236|ref|ZP_05153490.1| UvrD/REP helicase [Brucella abortus bv. 6 str. 870] gi|254731267|ref|ZP_05189845.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292] gi|256258489|ref|ZP_05464025.1| UvrD/REP helicase [Brucella abortus bv. 9 str. C68] gi|260546208|ref|ZP_05821948.1| UvrD/REP helicase [Brucella abortus NCTC 8038] gi|260755777|ref|ZP_05868125.1| double-strand break repair helicase AddA [Brucella abortus bv. 6 str. 870] gi|260759000|ref|ZP_05871348.1| double-strand break repair helicase AddA [Brucella abortus bv. 4 str. 292] gi|260884801|ref|ZP_05896415.1| double-strand break repair helicase AddA [Brucella abortus bv. 9 str. C68] gi|297247330|ref|ZP_06931048.1| double-strand break repair helicase AddA [Brucella abortus bv. 5 str. B3196] gi|62197077|gb|AAX75377.1| helicase, UvrD/Rep family [Brucella abortus bv. 1 str. 9-941] gi|82616957|emb|CAJ12061.1| UvrD/REP helicase:ATP/GTP-binding site motif A (P-loop) [Brucella melitensis biovar Abortus 2308] gi|189020729|gb|ACD73451.1| UvrD/REP helicase [Brucella abortus S19] gi|237788517|gb|EEP62732.1| double-strand break repair helicase AddA [Brucella abortus str. 2308 A] gi|260096315|gb|EEW80191.1| UvrD/REP helicase [Brucella abortus NCTC 8038] gi|260669318|gb|EEX56258.1| double-strand break repair helicase AddA [Brucella abortus bv. 4 str. 292] gi|260675885|gb|EEX62706.1| double-strand break repair helicase AddA [Brucella abortus bv. 6 str. 870] gi|260874329|gb|EEX81398.1| double-strand break repair helicase AddA [Brucella abortus bv. 9 str. C68] gi|297174499|gb|EFH33846.1| double-strand break repair helicase AddA [Brucella abortus bv. 5 str. B3196] Length = 1180 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 91/204 (44%), Positives = 133/204 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF +L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFAYVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213 >gi|254707379|ref|ZP_05169207.1| double-strand break repair helicase AddA [Brucella pinnipedialis M163/99/10] gi|261314862|ref|ZP_05954059.1| double-strand break repair helicase AddA [Brucella pinnipedialis M163/99/10] gi|261303888|gb|EEY07385.1| double-strand break repair helicase AddA [Brucella pinnipedialis M163/99/10] Length = 1180 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 91/204 (44%), Positives = 133/204 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF +L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFAYVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213 >gi|327192794|gb|EGE59722.1| putative ATP-dependent exonuclease V protein [Rhizobium etli CNPAF512] Length = 1183 Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats. Identities = 102/203 (50%), Positives = 145/203 (71%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+ Sbjct: 17 IGWTTIQQAIASDPLRSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 76 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS+RV E + W L D+ LS I +I+G P++ +++AR L LETPGGLK+QTI Sbjct: 77 EMSNRVFERLADWVVLDDDDLSRRIMQIEGTAPDRIKLAEARRLFAKALETPGGLKIQTI 136 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ + L+ +A+++ L + + L +AF +L Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAAALLSDARRALLTATAPEEGSALAEAFAYVL 196 Query: 197 EISNDEDIETLISDIISNRTALK 219 + ++ +E L+ DI++NR A++ Sbjct: 197 NLGDESGLENLLGDIVANRNAIR 219 >gi|190889666|ref|YP_001976208.1| probable ATP-dependent exonuclease V protein, nuclease and helicase domains [Rhizobium etli CIAT 652] gi|190694945|gb|ACE89030.1| probable ATP-dependent exonuclease V protein, nuclease and helicase domains [Rhizobium etli CIAT 652] Length = 1183 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 102/203 (50%), Positives = 145/203 (71%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T +Q +ASDP RSAWVSANAGSGKTH+L QRV+RLLLA A PS +LCLT+TKAAA+ Sbjct: 17 IGWTTIQQAIASDPLRSAWVSANAGSGKTHVLTQRVIRLLLAGARPSAILCLTYTKAAAS 76 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS+RV E + W L D+ LS I +I+G P++ +++AR L LETPGGLK+QTI Sbjct: 77 EMSNRVFERLADWVVLDDDDLSRRIMQIEGTAPDRIKLAEARRLFAKALETPGGLKIQTI 136 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ + L+ +A+++ L + + L +AF +L Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAAALLSDARRALLTATAPEEGSALAEAFAYVL 196 Query: 197 EISNDEDIETLISDIISNRTALK 219 + ++ +E L+ DI++NR A++ Sbjct: 197 NLGDESGLENLLGDIVANRNAIR 219 >gi|163844120|ref|YP_001628524.1| double-strand break repair helicase AddA [Brucella suis ATCC 23445] gi|163674843|gb|ABY38954.1| double-strand break repair helicase AddA [Brucella suis ATCC 23445] Length = 1180 Score = 232 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 90/204 (44%), Positives = 133/204 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WV ANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVPANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213 >gi|254713494|ref|ZP_05175305.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1] gi|254716150|ref|ZP_05177961.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1] gi|261217923|ref|ZP_05932204.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1] gi|261321227|ref|ZP_05960424.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1] gi|260923012|gb|EEX89580.1| double-strand break repair helicase AddA [Brucella ceti M13/05/1] gi|261293917|gb|EEX97413.1| double-strand break repair helicase AddA [Brucella ceti M644/93/1] Length = 1180 Score = 232 bits (591), Expect = 4e-59, Method: Composition-based stats. Identities = 91/204 (44%), Positives = 135/204 (66%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL + PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLESTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213 >gi|150398434|ref|YP_001328901.1| double-strand break repair helicase AddA [Sinorhizobium medicae WSM419] gi|150029949|gb|ABR62066.1| Double-strand break repair helicase AddA [Sinorhizobium medicae WSM419] Length = 1189 Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats. Identities = 103/203 (50%), Positives = 142/203 (69%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + T Q LASDP RSAWVSANAGSGKTH+L QRV+RLLLA PS +LCLT+TKAAA+ Sbjct: 17 LDWTTERQALASDPARSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAAS 76 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS+RV E + W+ L D L I I+GK+P + +AR L LETPGGLK+QTI Sbjct: 77 EMSNRVFEKLAEWATLDDAALEKRIEAIEGKRPATGKIQEARRLFARALETPGGLKIQTI 136 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ + L+ +A+++ L + N+ EL AF +L Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAAVLLADARRALLTATAAANDRELAAAFATVL 196 Query: 197 EISNDEDIETLISDIISNRTALK 219 E+++D +E L++ I++NR ++ Sbjct: 197 ELADDTGLEKLLAAIVANRAQIQ 219 >gi|17988306|ref|NP_540940.1| ATP-dependent nuclease subunit A [Brucella melitensis bv. 1 str. 16M] gi|17984079|gb|AAL53204.1| ATP-dependent nuclease subunit a [Brucella melitensis bv. 1 str. 16M] Length = 1180 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 89/204 (43%), Positives = 134/204 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L L+TPGG+K+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARVASARRLFARALKTPGGMKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213 >gi|209965882|ref|YP_002298797.1| helicase, UvrD [Rhodospirillum centenum SW] gi|209959348|gb|ACI99984.1| helicase, UvrD [Rhodospirillum centenum SW] Length = 1171 Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats. Identities = 73/199 (36%), Positives = 128/199 (64%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+DP S WV A+AG+GKT +L RVLRL+LA P +LCLT TKAAAAEM++R+ Sbjct: 20 QRRAADPEASVWVGASAGTGKTKVLTDRVLRLMLAGTDPGRILCLTFTKAAAAEMANRIA 79 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 +++W+ D++L + ++ G++P++ + AR L +L+ PGG+K+QTIHAFC+++ Sbjct: 80 GRLSSWAVAEDDVLVDRLAELTGERPSRDQVVVARRLFARVLDAPGGMKIQTIHAFCQSL 139 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 +++FPLEA + +F + D+ + +L+E+AK++ LA D + L A + +++ Sbjct: 140 LRRFPLEAGLAPNFEVMDDRTAAELLEQAKQAVLADAQADADGPLGSAVAFLAGAVSEDA 199 Query: 204 IETLISDIISNRTALKLIF 222 L++++ R ++ + Sbjct: 200 FAELLAELTRERGRVRRLL 218 >gi|254718138|ref|ZP_05179949.1| UvrD/REP helicase [Brucella sp. 83/13] gi|265983091|ref|ZP_06095826.1| double-strand break repair helicase AddA [Brucella sp. 83/13] gi|264661683|gb|EEZ31944.1| double-strand break repair helicase AddA [Brucella sp. 83/13] Length = 325 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 91/204 (44%), Positives = 134/204 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213 >gi|256112426|ref|ZP_05453347.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3 str. Ether] gi|265993864|ref|ZP_06106421.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3 str. Ether] gi|262764845|gb|EEZ10766.1| double-strand break repair helicase AddA [Brucella melitensis bv. 3 str. Ether] Length = 710 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 91/204 (44%), Positives = 134/204 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213 >gi|307322014|ref|ZP_07601393.1| double-strand break repair helicase AddA [Sinorhizobium meliloti AK83] gi|306892352|gb|EFN23159.1| double-strand break repair helicase AddA [Sinorhizobium meliloti AK83] Length = 1189 Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats. Identities = 100/203 (49%), Positives = 143/203 (70%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + T Q LASDP SAWVSANAGSGKTH+L QRV+RLLLA PS +LCLT+TKAAA+ Sbjct: 17 LDWTTQRQALASDPACSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAAS 76 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS+RV E + W+ L D L I I+GK+P + + +AR L LETPGGLK+QTI Sbjct: 77 EMSNRVFEKLAEWATLDDTTLEKRIEAIEGKRPPTAKIQEARRLFARALETPGGLKIQTI 136 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ + L+ +A+++ L + ++ EL +AF +L Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAAVLLADARRALLTATAAASDGELAEAFATVL 196 Query: 197 EISNDEDIETLISDIISNRTALK 219 ++++D +E L++ I++NR ++ Sbjct: 197 DLADDTGLEKLLAAIVANRAPIQ 219 >gi|15963787|ref|NP_384140.1| putative ATP-dependent nuclease/helicase protein [Sinorhizobium meliloti 1021] gi|307310975|ref|ZP_07590620.1| double-strand break repair helicase AddA [Sinorhizobium meliloti BL225C] gi|15072962|emb|CAC41421.1| ATP-dependent nuclease / helicase [Sinorhizobium meliloti 1021] gi|306899655|gb|EFN30282.1| double-strand break repair helicase AddA [Sinorhizobium meliloti BL225C] Length = 1189 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 100/203 (49%), Positives = 143/203 (70%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + T Q LASDP SAWVSANAGSGKTH+L QRV+RLLLA PS +LCLT+TKAAA+ Sbjct: 17 LDWTTQRQALASDPACSAWVSANAGSGKTHVLTQRVIRLLLAGCRPSAILCLTYTKAAAS 76 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS+RV E + W+ L D L I I+GK+P + + +AR L LETPGGLK+QTI Sbjct: 77 EMSNRVFEKLAEWATLDDTTLEKRIEAIEGKRPPTAKIQEARRLFARALETPGGLKIQTI 136 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCEA++ QFPLEAN+ HF++ D+ + L+ +A+++ L + ++ EL +AF +L Sbjct: 137 HAFCEALLHQFPLEANVAGHFSVLDDRAAAVLLADARRALLTATAAASDGELAEAFATVL 196 Query: 197 EISNDEDIETLISDIISNRTALK 219 ++++D +E L++ I++NR ++ Sbjct: 197 DLADDTGLEKLLAAIVANRAPIQ 219 >gi|114705059|ref|ZP_01437967.1| helicase, UvrD/Rep family protein [Fulvimarina pelagi HTCC2506] gi|114539844|gb|EAU42964.1| helicase, UvrD/Rep family protein [Fulvimarina pelagi HTCC2506] Length = 1211 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 93/207 (44%), Positives = 137/207 (66%), Gaps = 5/207 (2%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + T +Q +A+DP S +VSANAG+GKTH+L +RV+RLLLA PS +LCLT TKAAAAE Sbjct: 8 AYTAEQQRIAADPNLSVFVSANAGAGKTHVLTERVIRLLLAGFDPSKILCLTFTKAAAAE 67 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 MS+RV + AW+ + E L+ EI K++G P + +AR L LETPGGLK+QTIH Sbjct: 68 MSNRVFARLGAWAVMDGEKLADEIAKLEGHTPKPERIDQARQLFARALETPGGLKIQTIH 127 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL-----ASIMLDNNEELKKAF 192 AFCEAI+ QFPLEAN+ HF + D+ +S+ ++ E ++ + + + +EL++AF Sbjct: 128 AFCEAILHQFPLEANVAGHFEVLDDGESRLMLGEVRRRLVTGAAALAAGREAADELREAF 187 Query: 193 YEILEISNDEDIETLISDIISNRTALK 219 E L I + + L+++I+ R ++ Sbjct: 188 AEALAIGGEFGFDGLLTEIVQKRDDIR 214 >gi|260463224|ref|ZP_05811426.1| double-strand break repair helicase AddA [Mesorhizobium opportunistum WSM2075] gi|259031074|gb|EEW32348.1| double-strand break repair helicase AddA [Mesorhizobium opportunistum WSM2075] Length = 1166 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 94/203 (46%), Positives = 135/203 (66%), Gaps = 3/203 (1%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S T + Q A+DP SAWVSANAGSGKTH+L QRV+RLLL PS +LCLT+T+AAAA Sbjct: 9 SDTATSQARAADPQNSAWVSANAGSGKTHVLAQRVIRLLLNGTDPSKILCLTYTRAAAAN 68 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 MS+RV ++ W+ L D L+A I ++G++P++ M +AR L LETPGGLK+QTIH Sbjct: 69 MSNRVFSTLSEWTSLGDADLAARIEALEGRRPDRDTMRRARRLFAEALETPGGLKIQTIH 128 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFCE+++ QFPLEANI SHF + D + L A++ +++ + +L +AF +LE Sbjct: 129 AFCESVLHQFPLEANIPSHFEMLDSQMEASLFAAARREMISAA---GDADLTEAFATVLE 185 Query: 198 ISNDEDIETLISDIISNRTALKL 220 + ++ L+ +I+ R L+ Sbjct: 186 RGGEAGLDALLGEIVRKRDGLRY 208 >gi|254696352|ref|ZP_05158180.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59] gi|260760724|ref|ZP_05873067.1| UvrD/REP family helicase [Brucella abortus bv. 2 str. 86/8/59] gi|260671156|gb|EEX57977.1| UvrD/REP family helicase [Brucella abortus bv. 2 str. 86/8/59] Length = 713 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 91/204 (44%), Positives = 133/204 (65%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A+DP+ S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETIDAQARAADPSASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + K++ ++P + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEALAERLEKLERRRPGAARLATARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA+++ L + + L AF +L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRTLLETAYGGGDPALAAAFAYVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 + + +++L+ + + R L+L Sbjct: 190 AGETGLQSLLDEAVGRRNGLQLYL 213 >gi|288959562|ref|YP_003449903.1| ATP-dependent exoDNAse beta subunit [Azospirillum sp. B510] gi|288911870|dbj|BAI73359.1| ATP-dependent exoDNAse beta subunit [Azospirillum sp. B510] Length = 1158 Score = 228 bits (581), Expect = 6e-58, Method: Composition-based stats. Identities = 77/199 (38%), Positives = 123/199 (61%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q ASDPT S WV A+AGSGKT +L RVLRL+L+ P+ +LCLT TKAAAAEM+ R+ Sbjct: 3 QRRASDPTASVWVGASAGSGKTKVLTDRVLRLMLSGTPPARILCLTFTKAAAAEMAIRIN 62 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + W+ L DE L + ++ G++P+ AR L +++ PGG+K+QTIHAFC+++ Sbjct: 63 RTLGLWATLPDEALEDRLAELCGERPSTEARLNARRLFAQVVDCPGGMKIQTIHAFCQSL 122 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 +++FPLEA + HF + D+ + L+ EA+ + L + + + L +A + N ED Sbjct: 123 LRRFPLEAELAPHFDVMDDRTADGLLTEARDAVLHAGRTEPDSPLGRAMGRLTGELNPED 182 Query: 204 IETLISDIISNRTALKLIF 222 L++++ R ++ + Sbjct: 183 FAALLAELAGQRGQVERLL 201 >gi|304392405|ref|ZP_07374346.1| double-strand break repair helicase AddA [Ahrensia sp. R2A130] gi|303295509|gb|EFL89868.1| double-strand break repair helicase AddA [Ahrensia sp. R2A130] Length = 1195 Score = 227 bits (580), Expect = 7e-58, Method: Composition-based stats. Identities = 98/203 (48%), Positives = 136/203 (66%), Gaps = 3/203 (1%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 QT EQ AS P SAWVSANAGSGKT++L QRV+RLLLA PS +LCLT TKAAA M Sbjct: 11 QTSLEQAKASAPDHSAWVSANAGSGKTYVLTQRVVRLLLAGTDPSRILCLTFTKAAAGVM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQG---KKPNKSDMSKARHLLITILETPGGLKVQT 135 S+RV E + +++ L D+ L + +++G K P++ + +AR L LETPGGLK+QT Sbjct: 71 SNRVFETLASFASLDDDALKTALVELEGPNCKAPSREKIQRARTLFARALETPGGLKIQT 130 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IHAFCE+++ QFPLEAN+ +F+ DE Q K+++E+A++ + +L KAF+ I Sbjct: 131 IHAFCESLLHQFPLEANVPGNFSALDEAQGKQMLEQARRDVIVDADAAPESDLGKAFHAI 190 Query: 196 LEISNDEDIETLISDIISNRTAL 218 L+ + D IE +S+ IS R L Sbjct: 191 LDAATDHAIEQGLSEAISKREVL 213 >gi|118593731|ref|ZP_01551100.1| helicase, UvrD/Rep family protein [Stappia aggregata IAM 12614] gi|118433641|gb|EAV40304.1| helicase, UvrD/Rep family protein [Stappia aggregata IAM 12614] Length = 1178 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 88/200 (44%), Positives = 130/200 (65%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T+ Q LAS P SAWVSANAGSGKT +L +RV+RLLL PS +L LT TKAAAAEM+ Sbjct: 18 TRQRQDLASRPRASAWVSANAGSGKTFVLSRRVVRLLLDGTDPSRILALTFTKAAAAEMA 77 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV +I+ W DE L+AE+ I+G+KP+ + ++ AR L LETPGGLK+QTIH F Sbjct: 78 TRVFKILGEWVTKDDEALAAELQDIEGRKPDAARLAMARRLFARALETPGGLKIQTIHGF 137 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 CE+++ QFPLEAN+ HFA+ D+ + +L+ ++ + L + +A ++++ Sbjct: 138 CESLLHQFPLEANVAGHFAVLDDRVAAELMAASRATVLHVAETEPESAFGRALASVIDLM 197 Query: 200 NDEDIETLISDIISNRTALK 219 +D + + ++I +R A + Sbjct: 198 SDGGAQKALDELIQSRDAFR 217 >gi|154250594|ref|YP_001411418.1| double-strand break repair helicase AddA [Parvibaculum lavamentivorans DS-1] gi|154154544|gb|ABS61761.1| Double-strand break repair helicase AddA [Parvibaculum lavamentivorans DS-1] Length = 1156 Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats. Identities = 85/209 (40%), Positives = 123/209 (58%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 S S+T Q AS P S WVSANAGSGKTH L RV RLLLA P +LCLT Sbjct: 1 MSSLTKKPSETDDAQRRASHPETSVWVSANAGSGKTHALTTRVARLLLAGTDPQRILCLT 60 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 TKAAAAEMS R+ + + W+ +SDE L+ EI +++G P+ + + A L +ETPG Sbjct: 61 FTKAAAAEMSARLYKRLGEWAMMSDEALAEEILEVEGTAPDTAKLRGAGQLFARAIETPG 120 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 GLK+QTIHAFCE ++ +FPLEA++ F I DE +++L++E + + L + + L Sbjct: 121 GLKIQTIHAFCERLLGRFPLEADVPPQFEILDERAAQELMDEVRDAVLRRAGGEADTALG 180 Query: 190 KAFYEILEISNDEDIETLISDIISNRTAL 218 +A ++ ++ L+ ++ R Sbjct: 181 QALSHVVSRVDELAFGKLLKEVTDQRGNF 209 >gi|163757508|ref|ZP_02164597.1| probable nuclease/helicase protein, ATP dependent [Hoeflea phototrophica DFL-43] gi|162285010|gb|EDQ35292.1| probable nuclease/helicase protein, ATP dependent [Hoeflea phototrophica DFL-43] Length = 1196 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 93/201 (46%), Positives = 138/201 (68%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 D+ISQT Q A+ P SAWVSANAGSGKTH+L +RV+RLLL A PS +LCLT+TKAA Sbjct: 10 DVISQTTLRQNRAATPQLSAWVSANAGSGKTHVLARRVIRLLLRGARPSAILCLTYTKAA 69 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEMS+RV + + W L D+ L+ ++T+++G + AR L T LETPGGLK+Q Sbjct: 70 AAEMSNRVFKTLADWVLLDDQALAEKLTELEGAPTEPRTLILARRLFATALETPGGLKIQ 129 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TIHAFCEA++ +FPLEANI HF++ D++++ +L+ EA++ +++ + + L A + Sbjct: 130 TIHAFCEAVLHRFPLEANIPGHFSVLDDQKAAELLAEARRELMSAQAFEADPALADAVTQ 189 Query: 195 ILEISNDEDIETLISDIISNR 215 L+I + + L++ + + R Sbjct: 190 ALDIGGESGFDKLLAGLYARR 210 >gi|13474239|ref|NP_105807.1| ATP-dependent nuclease subunit A [Mesorhizobium loti MAFF303099] gi|14024991|dbj|BAB51593.1| ATP-dependent nuclease subunit A [Mesorhizobium loti MAFF303099] Length = 1170 Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats. Identities = 94/202 (46%), Positives = 134/202 (66%), Gaps = 1/202 (0%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S T + Q A+DP SAWVSANAGSGKTH+L QRV+RLLL PS +LCLT+T+AAAA Sbjct: 9 SDTANSQARAADPQNSAWVSANAGSGKTHVLAQRVIRLLLNGTDPSKILCLTYTRAAAAN 68 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 MS+RV ++ W+ L D L+A+I ++G++P++ M +AR L LETPGGLK+QTIH Sbjct: 69 MSNRVFSTLSEWTVLGDAELAAKIEALEGRRPDRDTMRRARRLFAEALETPGGLKIQTIH 128 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFCE+++ QFPLEANI +HF + D + L A++ ++ N +L AF +LE Sbjct: 129 AFCESVLHQFPLEANIPAHFEMLDGQMEASLFAAARREMISGTAA-GNPDLADAFATVLE 187 Query: 198 ISNDEDIETLISDIISNRTALK 219 + ++ L+ +I+ R L+ Sbjct: 188 RGGEAGLDALLGEIVRKRDGLR 209 >gi|307942842|ref|ZP_07658187.1| double-strand break repair helicase AddA [Roseibium sp. TrichSKD4] gi|307773638|gb|EFO32854.1| double-strand break repair helicase AddA [Roseibium sp. TrichSKD4] Length = 1174 Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats. Identities = 91/200 (45%), Positives = 125/200 (62%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T+ Q AS P SAWVSANAGSGKT +L +RV+RLLL PS +L LT TKAAAAEM+ Sbjct: 10 TRERQDRASQPRASAWVSANAGSGKTFVLSRRVVRLLLDGTDPSRILALTFTKAAAAEMA 69 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV +I+ W D+ L+ E+ +I+G+ P+ ++ AR L LETPGGLK+QTIH F Sbjct: 70 TRVFKILGEWVTKDDKDLADELEEIEGRTPDAKRVAFARRLFAEALETPGGLKIQTIHGF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 CEA++ QFPLEAN+ HF + D+ +L+ EA+ L + N EL A ++ + Sbjct: 130 CEALLHQFPLEANVAGHFQVLDDRIGAELMAEARGGVLHLAETNPNSELGNALNTVIGLM 189 Query: 200 NDEDIETLISDIISNRTALK 219 D E + ++I NR L+ Sbjct: 190 ADGTAEKALDELIQNRDDLR 209 >gi|319780204|ref|YP_004139680.1| double-strand break repair helicase AddA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166092|gb|ADV09630.1| double-strand break repair helicase AddA [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 1172 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 92/202 (45%), Positives = 134/202 (66%), Gaps = 1/202 (0%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S T + Q A+DP SAWVSANAGSGKTH+L QRV+RLLL PS +LCLT+T+AAAA Sbjct: 9 SDTATSQARAADPGNSAWVSANAGSGKTHVLAQRVIRLLLRGTDPSKILCLTYTRAAAAN 68 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 MS+RV ++ W+ L D L+A++ ++G++P+ M +AR L LETPGGLK+QTIH Sbjct: 69 MSNRVFSTLSEWTTLGDVDLAAKVEALEGRRPDLETMRRARRLFAEALETPGGLKIQTIH 128 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFCE+++ QFPLEANI +HF + D + L A++ ++ + +L +AF IL+ Sbjct: 129 AFCESVLHQFPLEANIPAHFEMLDGQMEASLFAAARREMISGTSA-GDRDLAEAFASILD 187 Query: 198 ISNDEDIETLISDIISNRTALK 219 + ++ L+ +I+ R L+ Sbjct: 188 RGGEAGLDALLGEIVRKRDGLR 209 >gi|328545810|ref|YP_004305919.1| Double-strand break repair helicase AddA [Polymorphum gilvum SL003B-26A1] gi|326415550|gb|ADZ72613.1| Double-strand break repair helicase AddA [Polymorphum gilvum SL003B-26A1] Length = 1165 Score = 222 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 94/202 (46%), Positives = 124/202 (61%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 ++T Q LAS P SAWVSANAGSGKT +L +RV+RLLL PS LLCLT TKAAAAE Sbjct: 8 ARTLERQDLASRPEASAWVSANAGSGKTFVLSRRVVRLLLDGTDPSRLLCLTFTKAAAAE 67 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ RV I+ W L D L+ EI + G++P + AR L LETPGGLK+QTIH Sbjct: 68 MATRVFRILGQWVALDDAALAREIEMLDGRRPGADRLKAARRLFAKALETPGGLKIQTIH 127 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFCEA++ QFPLEAN+ HF + D+ +L+ E + L D + L A ++ Sbjct: 128 AFCEALLHQFPLEANVAGHFTVLDDRVGAELMAEERARVLHRAESDPHSPLGAALGSLIR 187 Query: 198 ISNDEDIETLISDIISNRTALK 219 + D +E + ++I R AL+ Sbjct: 188 LMPDATVEAALGELIGRRDALR 209 >gi|90420586|ref|ZP_01228493.1| putative DNA helicase (UvrD/Rep family) [Aurantimonas manganoxydans SI85-9A1] gi|90335314|gb|EAS49067.1| putative DNA helicase (UvrD/Rep family) [Aurantimonas manganoxydans SI85-9A1] Length = 1209 Score = 220 bits (562), Expect = 9e-56, Method: Composition-based stats. Identities = 94/208 (45%), Positives = 133/208 (63%), Gaps = 4/208 (1%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 I++T Q +A+DP RS +VSANAGSGKTH+L +RV+RLLL+ PS +LCLT+TKAAA Sbjct: 6 GIAETTRLQAIAADPERSVFVSANAGSGKTHVLTERVVRLLLSKVEPSKILCLTYTKAAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEMS RV + W+ D L+AEI ++ G+ P M AR L LETPGGLK+QT Sbjct: 66 AEMSGRVFARLAKWATAEDADLAAEIARLDGRPPTPERMIVARRLFAEALETPGGLKIQT 125 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IHAFCEAI+ QFPLEAN+ HF + D+ +S L+ EA++ + +E A + Sbjct: 126 IHAFCEAILHQFPLEANVPGHFEVLDDAESMALLAEARRLLITGAARKAPDEAASALADA 185 Query: 196 LE----ISNDEDIETLISDIISNRTALK 219 ++ + ++ LI +I++ R A++ Sbjct: 186 FASALTLAGEWGLDQLIGEIVNRRDAIR 213 >gi|83313261|ref|YP_423525.1| ATP-dependent exoDNAse beta subunit [Magnetospirillum magneticum AMB-1] gi|82948102|dbj|BAE52966.1| ATP-dependent exoDNAse beta subunit [Magnetospirillum magneticum AMB-1] Length = 1154 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 76/204 (37%), Positives = 123/204 (60%), Gaps = 1/204 (0%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 Q A+DPT S WV+A+AG+GKT +L RVL LLLA P +LCLT TKAAAAEM Sbjct: 10 DADQRQRRAADPTASVWVAASAGTGKTKVLTDRVLTLLLAGTPPHKILCLTFTKAAAAEM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 S+R+ + W+ D L+ ++ ++ G+ P+ +M+ AR L +L+ PGG+ ++TIHA Sbjct: 70 SNRIAGRLGQWATAHDSDLADDLGRLLGRAPSPGEMTGARRLFAALLDAPGGMHMETIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC++++++FPLEA I HF + D+ + +L+E AK L+ + + L A + Sbjct: 130 FCQSLLRRFPLEAGIAPHFQVMDDRDAGELLEAAKLEILSQARM-GDGALGGALALVTSR 188 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 ++ L+ ++ + R L+ +F Sbjct: 189 VHETAFPELMGELTAERGRLERLF 212 >gi|144899270|emb|CAM76134.1| UvrD/REP helicase [Magnetospirillum gryphiswaldense MSR-1] Length = 1146 Score = 218 bits (555), Expect = 6e-55, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 126/207 (60%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +I + + Q A+DPT S WV+A+AG+GKT +L RVL LLLA P LLCLT TKAAA Sbjct: 1 MIVEASNRQRQAADPTASVWVAASAGTGKTKVLTDRVLNLLLAGNAPHKLLCLTFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEMS+R+ + W+ D L +T++ G+ P + +AR L +L+ PGG+ ++T Sbjct: 61 AEMSNRINAKLATWAVADDASLDQTLTELLGRPPTPPETIRARRLFAQVLDAPGGMHMET 120 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IHAFC++++++FPLEA I HF + D+ + +L++EAK+ L + L A ++ Sbjct: 121 IHAFCQSLLRRFPLEAGIAPHFQVMDDRDAGELLDEAKEEVLTHARHGADAHLAAALDQV 180 Query: 196 LEISNDEDIETLISDIISNRTALKLIF 222 ++ L++++ S+R LK + Sbjct: 181 TRHVHETGFPDLLAELASDRGRLKRLL 207 >gi|23016111|ref|ZP_00055871.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Magnetospirillum magnetotacticum MS-1] Length = 1154 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 76/207 (36%), Positives = 124/207 (59%), Gaps = 1/207 (0%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L Q A+DPT S WV+A+AG+GKT +L RVL LLLA P +LCLT TKAAA Sbjct: 7 LSQDADRRQRRAADPTASVWVAASAGTGKTKVLTDRVLTLLLAGTPPHKILCLTFTKAAA 66 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEMS+R+ + W+ D+ L+ ++ ++ G+ P +M AR L ++L+ PGG+ ++T Sbjct: 67 AEMSNRIAGRLGQWATARDQDLAGDLERLLGRPPAVGEMIGARRLFASLLDAPGGMHMET 126 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IHAFC++++++FPLEA I HF + D+ + +L+E AK L+ + + L +A + Sbjct: 127 IHAFCQSLLRRFPLEAGIAPHFQVMDDRDAGELLESAKLEVLSHARM-GDGALGRALALV 185 Query: 196 LEISNDEDIETLISDIISNRTALKLIF 222 ++ L+ ++ + R L+ + Sbjct: 186 TARVHETAFPDLMGELTAERGRLERLL 212 >gi|239833145|ref|ZP_04681474.1| double-strand break repair helicase AddA [Ochrobactrum intermedium LMG 3301] gi|239825412|gb|EEQ96980.1| double-strand break repair helicase AddA [Ochrobactrum intermedium LMG 3301] Length = 1195 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 91/198 (45%), Positives = 131/198 (66%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+DP S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M +RV Sbjct: 28 QGRAADPAASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVMQNRVF 87 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 ++ W+ L DE L+ + ++G++P + ++ AR L LETPGGLK+QTIHAFCEAI Sbjct: 88 MRLSEWAVLPDEELTERLKSLEGRRPGDARLAAARRLFARALETPGGLKIQTIHAFCEAI 147 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + QFPLEANI HF + D+ L+ EA++ L + + EL AF ++L+ + + Sbjct: 148 LHQFPLEANIAGHFEMMDDLMQAALVGEARRQLLETAHGGGDMELAAAFADVLQAAGEMG 207 Query: 204 IETLISDIISNRTALKLI 221 +++L+ + +S R L+ Sbjct: 208 LQSLLEEAVSRRNGLQTY 225 >gi|316931471|ref|YP_004106453.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris DX-1] gi|315599185|gb|ADU41720.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris DX-1] Length = 1161 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 82/201 (40%), Positives = 117/201 (58%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 ++ ++ Q +ASDP+ S +VSANAGSGKTH+LVQRV+RLLL P +LC+T TKAAAA Sbjct: 7 NEARARQEIASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVSPERILCITFTKAAAAN 66 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ RV + W L DE LSA I K S +++AR L LETPGGLKVQTIH Sbjct: 67 MAERVFTTLGHWVKLDDEELSAAIRATGIKAVGPSLLAQARKLFACALETPGGLKVQTIH 126 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 A C ++QQFP EAN+ + F++ D+ +L++ A L + + +A + Sbjct: 127 ALCTRLLQQFPFEANVPARFSVLDDRDQAELMQRASLDVLLRAAAAPDSDAGRALAFAMT 186 Query: 198 ISNDEDIETLISDIISNRTAL 218 + D ++ + +R Sbjct: 187 SAADVTFRDVVQEACMSRDRF 207 >gi|192288510|ref|YP_001989115.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris TIE-1] gi|192282259|gb|ACE98639.1| double-strand break repair helicase AddA [Rhodopseudomonas palustris TIE-1] Length = 1161 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 82/201 (40%), Positives = 117/201 (58%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 ++ ++ Q +ASDP+ S +VSANAGSGKTH+LVQRV+RLLL P +LC+T TKAAAA Sbjct: 7 NEARARQEIASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVSPERILCITFTKAAAAN 66 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ RV + W L DE LSA I K S +++AR L LETPGGLKVQTIH Sbjct: 67 MAERVFTTLGHWVKLDDEELSAAIHATGVKTVGPSLLAQARKLFACALETPGGLKVQTIH 126 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 A C ++QQFP EAN+ + F++ D+ +L++ A L + + +A + Sbjct: 127 ALCTRLLQQFPFEANVPARFSVLDDRDQAELMQRASLDVLLRAAAAPDSDAGRALAFAMT 186 Query: 198 ISNDEDIETLISDIISNRTAL 218 + D ++ + +R Sbjct: 187 SAADVTFRDVVQEACMSRDRF 207 >gi|302384281|ref|YP_003820104.1| double-strand break repair helicase AddA [Brevundimonas subvibrioides ATCC 15264] gi|302194909|gb|ADL02481.1| double-strand break repair helicase AddA [Brevundimonas subvibrioides ATCC 15264] Length = 1160 Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats. Identities = 78/204 (38%), Positives = 125/204 (61%), Gaps = 3/204 (1%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 Q+ A+DP +S +V+ANAGSGKT LV RV RLLL + P +LC+T+TKAAAAEM Sbjct: 12 DPAQIAAADPRQSVFVTANAGSGKTSTLVDRVARLLLEDVSPGEILCVTYTKAAAAEMQA 71 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGLKVQTIH 137 R+ + + AW+ + D L A + + G+ +K+D+S AR L L+TPGGLK+QT+H Sbjct: 72 RLFDRLGAWAVMDDATLEASLADLDGRAATILSKTDLSNARRLFAKALDTPGGLKIQTLH 131 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFCE ++++FPLEA +T F + +++ + L EA++ + + + E+ +A+ Sbjct: 132 AFCEKLLRRFPLEAGVTPGFTVLEDQAATALSHEAREDLARRALGNGDGEIGRAYAHFAV 191 Query: 198 ISNDEDIETLISDIISNRTALKLI 221 + + E L++ I ++R L Sbjct: 192 ELDFKSFEGLLARIEADRARLLDY 215 >gi|39933154|ref|NP_945430.1| UvrD/REP helicase [Rhodopseudomonas palustris CGA009] gi|39652779|emb|CAE25518.1| Possible exonuclease V and helicase activity based on COG assignment [Rhodopseudomonas palustris CGA009] Length = 1161 Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats. Identities = 82/201 (40%), Positives = 116/201 (57%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 ++ ++ Q +ASDP+ S +VSANAGSGKTH+LVQRV+RLLL P +LC+T TKAAAA Sbjct: 7 NEARARQEIASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVSPERILCITFTKAAAAN 66 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ RV + W L DE LSA I K S +++AR L LETPGGLKVQTIH Sbjct: 67 MAERVFTTLGHWVKLDDEELSAAIHATGVKTVGPSLLAQARKLFACALETPGGLKVQTIH 126 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 A C ++QQFP EAN+ + F++ D+ +L++ A L + +A + Sbjct: 127 ALCTRLLQQFPFEANVPARFSVLDDRDQAELMQRASLDVLLRAAAAPESDAGRALAFAMT 186 Query: 198 ISNDEDIETLISDIISNRTAL 218 + D ++ + +R Sbjct: 187 SAADVTFRDVVQEACMSRDRF 207 >gi|153008153|ref|YP_001369368.1| double-strand break repair helicase AddA [Ochrobactrum anthropi ATCC 49188] gi|151560041|gb|ABS13539.1| Double-strand break repair helicase AddA [Ochrobactrum anthropi ATCC 49188] Length = 1180 Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats. Identities = 92/203 (45%), Positives = 134/203 (66%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +T Q A++P S WVSANAGSGKTH+L +RV+RLLL PS +LCLT+TKAAAA M Sbjct: 10 ETLRAQSNAANPAASVWVSANAGSGKTHVLTERVIRLLLEGTDPSKILCLTYTKAAAAVM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV ++ W+ L DE L+ + ++G++PN + ++ AR L LETPGGLK+QTIHA Sbjct: 70 QNRVFMRLSEWAVLPDEELAERLKSLEGRRPNDARLAAARRLFARALETPGGLKIQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCEAI+ QFPLEANI HF + D+ L+ EA++ L + + +L AF ++L+ Sbjct: 130 FCEAILHQFPLEANIAGHFEMMDDLMQAALVGEARRQLLETAHGGGDIDLAAAFADVLQA 189 Query: 199 SNDEDIETLISDIISNRTALKLI 221 S + +++L+ + +S R L+ Sbjct: 190 SGEMGLQSLLDEAVSRRNGLQTY 212 >gi|319403513|emb|CBI77092.1| ATP-dependent nuclease subunit A [Bartonella rochalimae ATCC BAA-1498] Length = 1152 Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 87/205 (42%), Positives = 129/205 (62%), Gaps = 7/205 (3%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+DPT S WVSANAGSGKTH+L +RV+RLLL P+ +LCLT+T AAA+ M R+ Sbjct: 14 QAKATDPTTSVWVSANAGSGKTHVLTERVIRLLLNGTPPARILCLTYTNAAASVMQSRIF 73 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 ++ WS L D+ L ++K++ K N ++ AR L LETPGGLK+QT HAFCE++ Sbjct: 74 RTLSNWSGLDDKQLQTILSKLENKPVNTQKLANARQLFARALETPGGLKIQTFHAFCESL 133 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + QFPLEANI SHF + D+ KKL+++A++ L + + + A E+ +I ++ Sbjct: 134 LHQFPLEANIASHFELLDDINRKKLLQQARRKLLI------HRDAQLALKELFKIISENT 187 Query: 204 IETLISDIISNRTAL-KLIFFFFSY 227 + L+ + + L + + F FS Sbjct: 188 LNQLLYEATQKQHELSEFLPFIFSE 212 >gi|319406427|emb|CBI80067.1| ATP-dependent nuclease subunit A [Bartonella sp. 1-1C] Length = 1152 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 87/205 (42%), Positives = 129/205 (62%), Gaps = 7/205 (3%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+DPT S WVSANAGSGKTH+L +RV+RLLL P+ +LCLT+T AAA+ M R+ Sbjct: 14 QAKATDPTTSVWVSANAGSGKTHVLTERVIRLLLNGTPPARILCLTYTNAAASVMQSRIF 73 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 ++ WS L D+ L ++K++ K N ++ AR L LETPGGLK+QT HAFCE++ Sbjct: 74 RTLSNWSGLDDKQLQTILSKLENKPVNTQKLANARQLFARALETPGGLKIQTFHAFCESL 133 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + QFPLEANI SHF + D+ KKL+++A++ L + + + A E+ +I ++ Sbjct: 134 LHQFPLEANIASHFELLDDINRKKLLQQARRKLLI------HRDAQLALKELFKIISENT 187 Query: 204 IETLISDIISNRTAL-KLIFFFFSY 227 + L+ + + L + + F FS Sbjct: 188 LNQLLYEATQKQHELSEFLPFIFSE 212 >gi|83950792|ref|ZP_00959525.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius nubinhibens ISM] gi|83838691|gb|EAP77987.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius nubinhibens ISM] Length = 1112 Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats. Identities = 77/203 (37%), Positives = 122/203 (60%), Gaps = 8/203 (3%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + Q+ A+ P S W+SANAGSGKT +L RV RLLLA+ +P +LCLT+TKAAA+ Sbjct: 1 MDDATRRQIDAARPDFSTWLSANAGSGKTRVLTDRVARLLLADVNPQNILCLTYTKAAAS 60 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +R+ + + AW+ L D L E+ K+ + ++KAR L T +ETPGGL++QT Sbjct: 61 EMQNRLFQRLGAWAMLPDADLREELRKLGVDAVIDDLPLTKARRLFATAIETPGGLRIQT 120 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC A++++FPLEA +T F D+ + L + + I L + L + ++ Sbjct: 121 IHSFCAALLRRFPLEAGVTPQFTEMDDRTAATL----RSDVVEEIALGPDAALLR---DL 173 Query: 196 LEISNDEDIETLISDIISNRTAL 218 + + +D++ L+ +I+ R L Sbjct: 174 VSYYSGDDLDKLLREILGKRDQL 196 >gi|83859061|ref|ZP_00952582.1| helicase, UvrD/Rep family protein [Oceanicaulis alexandrii HTCC2633] gi|83852508|gb|EAP90361.1| helicase, UvrD/Rep family protein [Oceanicaulis alexandrii HTCC2633] Length = 1219 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 78/199 (39%), Positives = 116/199 (58%), Gaps = 1/199 (0%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 Q A+DP+ S +V ANAGSGKT +LV RV RLLLA A P +LC+T TKAAA EM Sbjct: 14 ASEAQATAADPSASVFVEANAGSGKTRVLVDRVARLLLAGARPDRILCVTFTKAAAGEMQ 73 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + WS L D+ L+ E+ + + + + +AR L LETPGGLK+QT+HAF Sbjct: 74 ARLFRKLGDWSTLPDDALTKELDALVTEG-QRPPLDEARRLFARALETPGGLKIQTLHAF 132 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 CE+++++FPLEA + F + D+ L EA ++ D E+ +A +++ S Sbjct: 133 CESLLRRFPLEAGLPPGFEVQDDASGLALQTEALEALSGQAHRDPEGEIAQAIAALIDGS 192 Query: 200 NDEDIETLISDIISNRTAL 218 + + L + ++S R L Sbjct: 193 GADALARLSAFVMSKRHEL 211 >gi|323138129|ref|ZP_08073202.1| double-strand break repair helicase AddA [Methylocystis sp. ATCC 49242] gi|322396591|gb|EFX99119.1| double-strand break repair helicase AddA [Methylocystis sp. ATCC 49242] Length = 1145 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 92/201 (45%), Positives = 130/201 (64%), Gaps = 1/201 (0%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S TK+ Q ASDP SAWVSANAGSGKTH+L QRV+RLLLA PS +LCLT+TKAAAA Sbjct: 8 SLTKNAQRDASDPAASAWVSANAGSGKTHVLSQRVVRLLLARVPPSRILCLTYTKAAAAN 67 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 MS R+ +++ W+ L DE L EI +P++++++ AR L +ETPGGLK+QTIH Sbjct: 68 MSARIFDVLARWALLDDESLIREIEATGADRPSRAELNVARCLFARAVETPGGLKIQTIH 127 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFCE ++ FP EAN + F + D+ + +L+E +K+ L M D+ L+ A + Sbjct: 128 AFCEKLLHHFPFEANAPAGFRVIDDMERAELLEASKRRALDCAMRDSG-ALRHALEHVAR 186 Query: 198 ISNDEDIETLISDIISNRTAL 218 ++ + L +++ NR AL Sbjct: 187 ETSGFGFDNLCDELLGNRDAL 207 >gi|89067401|ref|ZP_01154914.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola granulosus HTCC2516] gi|89046970|gb|EAR53024.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola granulosus HTCC2516] Length = 1119 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 76/201 (37%), Positives = 111/201 (55%), Gaps = 10/201 (4%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 ++ Q+ A+DP S W+SANAGSGKT +L +RV RLLL P +LCLT TKAAAAE Sbjct: 5 NEATRAQVEAADPANSTWLSANAGSGKTRVLTERVARLLLGGVDPQNILCLTFTKAAAAE 64 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M +R+ + +W+ + L E++++ +P + + +AR L +ETPGGLK+QTIH Sbjct: 65 MQNRLFHRLGSWAMMEAGKLREELSELGAAQPEE--LDEARRLFARAIETPGGLKIQTIH 122 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFC ++++FPLEA I+ F ++ + L E E A I Sbjct: 123 AFCAGVLRRFPLEAGISPRFTEMEDRAAALLRAEILDEL--------AEADPAAVDGIAR 174 Query: 198 ISNDEDIETLISDIISNRTAL 218 + DI L +I +NR A Sbjct: 175 LYTGADIADLTGEITANRAAF 195 >gi|110635907|ref|YP_676115.1| DNA helicase/exodeoxyribonuclease V, subunit A [Mesorhizobium sp. BNC1] gi|110286891|gb|ABG64950.1| DNA helicase/exodeoxyribonuclease V, subunit A [Chelativorans sp. BNC1] Length = 1177 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 102/196 (52%), Positives = 142/196 (72%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q LASDP+ SAWVSANAGSGKTH+L RV+RLLL PS +LCLT+T+AAAA M++RV Sbjct: 15 QALASDPSLSAWVSANAGSGKTHVLASRVIRLLLKGTDPSKILCLTYTRAAAANMANRVF 74 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 E + WS LSD+ L+ E+ K++G++P+ + +AR L LETPGGLK+QTIHAFCEAI Sbjct: 75 ENLAGWSLLSDDDLAEEVAKLEGRRPSSEKLRRARQLFARALETPGGLKIQTIHAFCEAI 134 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + QFPLEANI HF + DE+ + L EA++ L SI + + L++AF E+LE + Sbjct: 135 LHQFPLEANIAGHFDLLDEQMEEALFAEARRDLLTSIAAERDGPLEEAFAEVLERGGESG 194 Query: 204 IETLISDIISNRTALK 219 ++TL+++I++ R L+ Sbjct: 195 LQTLLTEIVARRDELR 210 >gi|158422338|ref|YP_001523630.1| putative exonuclease V [Azorhizobium caulinodans ORS 571] gi|158329227|dbj|BAF86712.1| putative exonuclease V [Azorhizobium caulinodans ORS 571] Length = 1171 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 82/201 (40%), Positives = 121/201 (60%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 ++ Q +A+ P SAWVSANAGSGKTH+L QRV+RLLL P +LCLT+TKAAAA Sbjct: 17 AEASRRQGVAASPQISAWVSANAGSGKTHVLAQRVIRLLLQGTPPGRILCLTYTKAAAAN 76 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M++RVL+I++ W+ L D L AE+ ++ G P +AR L LETPGGLK+QTIH Sbjct: 77 MANRVLKILSRWAGLDDAALDAELMRMDGMPPTPGLRIQARRLFAAALETPGGLKIQTIH 136 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFC ++ +FP EA + + F D+ +L+ + + + L +A ++E Sbjct: 137 AFCGGLLHRFPFEAGVAAGFRELDDVGRMELMARIRADLVVEAARAPSSTLGRALARLME 196 Query: 198 ISNDEDIETLISDIISNRTAL 218 +D I+ L+ I+ R+ + Sbjct: 197 EMSDGGIDDLLEAAIAARSTI 217 >gi|90421911|ref|YP_530281.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18] gi|90103925|gb|ABD85962.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas palustris BisB18] Length = 1164 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 88/199 (44%), Positives = 113/199 (56%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 Q+ ASDPT S +VSANAGSGKTH+LVQRV+RLLLA P +LC+T TKAAAA M+ Sbjct: 11 ATERQVQASDPTASVFVSANAGSGKTHVLVQRVIRLLLAGVPPEKILCITFTKAAAANMA 70 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV + W LSD+ L A I +P+ +AR L LETPGGLKVQTIHA Sbjct: 71 QRVFTTLGHWVTLSDDSLDAAIRAAGIAQPDSKLRMRARELFACALETPGGLKVQTIHAL 130 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C ++QQFP EAN+ + FA+ DE +++E A S L N KA + + Sbjct: 131 CTRLLQQFPFEANVPARFAVLDERDQTEMMERASLSVLLQAAQAPNSAAGKALTVAMTSA 190 Query: 200 NDEDIETLISDIISNRTAL 218 D ++ D +R Sbjct: 191 ADVTFRDVVRDACFSRDKF 209 >gi|254476353|ref|ZP_05089739.1| double-strand break repair helicase AddA [Ruegeria sp. R11] gi|214030596|gb|EEB71431.1| double-strand break repair helicase AddA [Ruegeria sp. R11] Length = 1125 Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats. Identities = 73/201 (36%), Positives = 117/201 (58%), Gaps = 3/201 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 Q A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM Sbjct: 7 ASEAQFRAARPDASTWLAANAGSGKTKVLTDRVARLLLRGVQPQHILCLTYTKAAASEMQ 66 Query: 80 HRVLEIITAWSHLSDEILSAEITKI-QGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +R+ + + W+ L D+ L++ +T++ +G + M++AR L +ETPGGLK+QTIH+ Sbjct: 67 NRLFKRLGEWAMLGDDALTSALTELGEGAIISPEGMAQARTLFARAIETPGGLKIQTIHS 126 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC +++++FPLEA ++ F+ ++ + L E + + D E K ++ + Sbjct: 127 FCASLLRRFPLEAGVSPQFSEMEDRAAMLLRAEIVEDF--AQGDDRYAEEAKLIAQLARV 184 Query: 199 SNDEDIETLISDIISNRTALK 219 D D +TL + I R + Sbjct: 185 VTDSDFDTLTAAICQRRADFE 205 >gi|84685773|ref|ZP_01013669.1| Helicase, UvrD/Rep family protein [Maritimibacter alkaliphilus HTCC2654] gi|84665866|gb|EAQ12340.1| Helicase, UvrD/Rep family protein [Rhodobacterales bacterium HTCC2654] Length = 1119 Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats. Identities = 75/201 (37%), Positives = 111/201 (55%), Gaps = 9/201 (4%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + Q+ A+DP + W+SANAGSGKT +L RV RLLL P +LCLT+TKAAA+E Sbjct: 4 DEATQRQVEAADPGGNTWLSANAGSGKTRVLTDRVARLLLNGVEPGHILCLTYTKAAASE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M +R+ + + AW+ L D+ L AE+ + D+ KAR L +E PGGLK+QTIH Sbjct: 64 MQNRLFQRLGAWAMLGDDDLRAELDALGVM--GAPDLRKARRLFARAIEAPGGLKIQTIH 121 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFC I+++FP+EA ++ F D+ ++ L EE + + +L+ + Sbjct: 122 AFCATILRRFPMEAGVSPDFKEMDDRTAQLLQEEIVEEM-------ASGDLRTRVEGLAR 174 Query: 198 ISNDEDIETLISDIISNRTAL 218 +I L +II R Sbjct: 175 YYTGAEIIGLTGEIIGKRQHF 195 >gi|255262268|ref|ZP_05341610.1| double-strand break repair helicase AddA [Thalassiobium sp. R2A62] gi|255104603|gb|EET47277.1| double-strand break repair helicase AddA [Thalassiobium sp. R2A62] Length = 1119 Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats. Identities = 71/198 (35%), Positives = 120/198 (60%), Gaps = 8/198 (4%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 Q+ A++P S W++ANAGSGKT +L RV RLLL A P +LCLT+TKAAA+EM +R Sbjct: 7 ERQVRAANPKASTWLAANAGSGKTRVLTDRVARLLLDEAKPEHILCLTYTKAAASEMQNR 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 + + + AW+ + D+ L E+ + + + + + +++AR L +ETPGGLK+QTIH+FC Sbjct: 67 LFKRLGAWTMMDDDKLRGELCDLGIESRIDTNTLARARVLFAQAIETPGGLKIQTIHSFC 126 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++++FPLEA ++ F ++ +K L E + A Y++ + Sbjct: 127 ASLLRRFPLEAGVSPQFVEMEDRAAKMLRAEVVDDM-------ARGDHTAAVYDLASYVS 179 Query: 201 DEDIETLISDIISNRTAL 218 D D++ ++ I S++ +L Sbjct: 180 DSDLDRVLMQITSHKESL 197 >gi|115522488|ref|YP_779399.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53] gi|115516435|gb|ABJ04419.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas palustris BisA53] Length = 1165 Score = 207 bits (528), Expect = 9e-52, Method: Composition-based stats. Identities = 85/201 (42%), Positives = 117/201 (58%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S ++Q+ ASDPT S +VSANAG+GKTH+LVQRV+RLLLA P +LC+T TKAAAA Sbjct: 9 SDAIAKQVQASDPTASVFVSANAGAGKTHVLVQRVIRLLLAGVPPEKILCITFTKAAAAN 68 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ RV + W LSD L A I KP+ ++AR L LETPGGLKVQTIH Sbjct: 69 MAQRVFSTLGHWVTLSDGALDAAIRGAGIAKPDAKLRTRARELFACALETPGGLKVQTIH 128 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 A C ++QQFP EAN+ + F + DE +++E A L + E+ +A + Sbjct: 129 ALCTRLLQQFPFEANVPARFTVLDERDQAEMMERASLGVLLRAASAPDSEIGRALTTAMT 188 Query: 198 ISNDEDIETLISDIISNRTAL 218 + D ++ + +R + Sbjct: 189 SAADTTFRDVVREACMSRDSF 209 >gi|75674249|ref|YP_316670.1| UvrD/REP helicase [Nitrobacter winogradskyi Nb-255] gi|74419119|gb|ABA03318.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrobacter winogradskyi Nb-255] Length = 1202 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 78/198 (39%), Positives = 111/198 (56%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 + Q ASDP S +VSANAGSGKTH+LVQRV+RLLL + P+ +LC+T TKAAAA M Sbjct: 11 DASARQQRASDPATSVFVSANAGSGKTHVLVQRVIRLLLNDVDPARILCITFTKAAAANM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + RV + W L DE L+ + + +P +AR L + LETPGGLKVQTIHA Sbjct: 71 AERVFSTLGHWVTLDDEALNGALRDVGIAQPGARWRERARKLFASALETPGGLKVQTIHA 130 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++QQFP EA + + F + DE +++E A + D + A + Sbjct: 131 LCTRLLQQFPFEAEVPARFTVLDERDQTEMMERASLKVMLDASQDPDSPSGLALRYAMSA 190 Query: 199 SNDEDIETLISDIISNRT 216 + D + +++ +R Sbjct: 191 ATDSTLRDVLNQACLSRD 208 >gi|319898220|ref|YP_004158313.1| ATP-dependent nuclease subunit A [Bartonella clarridgeiae 73] gi|319402184|emb|CBI75715.1| putative ATP-dependent nuclease subunit A [Bartonella clarridgeiae 73] Length = 1152 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 78/195 (40%), Positives = 121/195 (62%), Gaps = 6/195 (3%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+DP ++ WVSANAGSGKTH+L +RV+RLLL P+ +LCLT+T AAA+ M R+ Sbjct: 14 QAKATDPIKNVWVSANAGSGKTHVLTERVIRLLLNGTPPARILCLTYTNAAASVMQSRIF 73 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 +++W+ D+ L ++ ++ K N ++ AR L LETPGGLK+QT HAFCE++ Sbjct: 74 RTLSSWNQFDDKQLQKILSNLENKPANAKKLANARQLFARALETPGGLKIQTFHAFCESL 133 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + QFPLEANI HF + D+ KKL+++A+ L + + + A E+ ++ N+ Sbjct: 134 LHQFPLEANIAGHFELLDDINRKKLLKQARSKLLT------HRDAQLALKELFKVINENT 187 Query: 204 IETLISDIISNRTAL 218 + L+ + + L Sbjct: 188 LNQLLYEATQKQHEL 202 >gi|114568640|ref|YP_755320.1| DNA helicase/exodeoxyribonuclease V A [Maricaulis maris MCS10] gi|114339102|gb|ABI64382.1| DNA helicase/exodeoxyribonuclease V, subunit A [Maricaulis maris MCS10] Length = 1183 Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats. Identities = 79/204 (38%), Positives = 120/204 (58%), Gaps = 7/204 (3%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 D++ ++Q A+ P S +V ANAGSGKT +LV RV+ LLLA P T+LC+T+TKAA Sbjct: 9 DILKSASADQQRAARPEASVFVEANAGSGKTRVLVDRVINLLLAGHKPETILCVTYTKAA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM R+ + + WS DE+L+ E+ + + D ++AR L LETPGGLK+Q Sbjct: 69 AAEMKERLFKRLGDWSVTPDEVLAVELKALLDRDLKPGDANRARKLFAQALETPGGLKIQ 128 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TIHAFCE ++++FPLEA F D+ + K ++ A+++ L+ + +A Sbjct: 129 TIHAFCEGLLRRFPLEAGAPPGFDTLDDISAGKAMDAARRAVLSGLA-------PEAVNT 181 Query: 195 ILEISNDEDIETLISDIISNRTAL 218 ++E + I T++ SNR Sbjct: 182 LIETGGPDAINTILRWARSNRHDF 205 >gi|217977592|ref|YP_002361739.1| double-strand break repair helicase AddA [Methylocella silvestris BL2] gi|217502968|gb|ACK50377.1| double-strand break repair helicase AddA [Methylocella silvestris BL2] Length = 1151 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 91/201 (45%), Positives = 117/201 (58%), Gaps = 1/201 (0%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 QT +Q ASDP S WVSANAGSGKTH+L QRV+RLLL PS +LCLT TKAAAA M Sbjct: 9 QTLQKQREASDPAASVWVSANAGSGKTHVLAQRVVRLLLQGTPPSKILCLTFTKAAAANM 68 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 S RV + W+ L D L I P+ +M +AR L +ETPGGLK+QTIHA Sbjct: 69 SMRVFNTLARWTALDDAELRRAIVATGAPSPDWREMREARKLFARTVETPGGLKIQTIHA 128 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FCE ++ FP EAN S F +ADEE+ +L+ A+ L S + + ELK + Sbjct: 129 FCERLLHLFPFEANAPSRFEVADEERQGELLARARNDVLGSAA-EADHELKAIVDRVAGE 187 Query: 199 SNDEDIETLISDIISNRTALK 219 ++ TL+ + R L+ Sbjct: 188 CSEYGFATLLEQALRLRARLR 208 >gi|254509530|ref|ZP_05121597.1| double-strand break repair helicase AddA [Rhodobacteraceae bacterium KLH11] gi|221533241|gb|EEE36229.1| double-strand break repair helicase AddA [Rhodobacteraceae bacterium KLH11] Length = 1119 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 12/232 (5%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + L + Q+ A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKA Sbjct: 1 MTLRNDATERQVQAARPDASTWLAANAGSGKTRVLTDRVARLLLDGVQPQHILCLTYTKA 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKK-PNKSDMSKARHLLITILETPGGLK 132 AA+EM +R+ + + W+ L+D L +++T + + N +++AR L +ETPGGLK Sbjct: 61 AASEMQNRLFKRLGEWAMLADAPLLSQLTDLGIEGVINPDRLAQARTLFARAIETPGGLK 120 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 +QTIH+FC A++++FPLEA ++ FA ++ + L +E + Sbjct: 121 IQTIHSFCAALLRRFPLEAGVSPQFAEMEDRAAALLRDEIIEDF-------AEGPQAGLI 173 Query: 193 YEILEISNDEDIETLISDIISNRTA----LKLIFFFFSYLWRRKIIEKSLWS 240 E D + L + I R L+ + E++L Sbjct: 174 EEAARFVTDTGFDKLTAAISQKRNHFAQELQWSDLLRRFDLPEGFDEEALLH 225 >gi|83594763|ref|YP_428515.1| UvrD/REP helicase [Rhodospirillum rubrum ATCC 11170] gi|83577677|gb|ABC24228.1| UvrD/REP helicase [Rhodospirillum rubrum ATCC 11170] Length = 1187 Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats. Identities = 75/214 (35%), Positives = 120/214 (56%), Gaps = 11/214 (5%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 D + K ++ A DP SAWV+A+AG+GKT +L RVLRLLLA P LLCLT TKAA Sbjct: 16 DPLDPAKPQRRAA-DPLASAWVAASAGTGKTKVLTDRVLRLLLAGTPPQRLLCLTFTKAA 74 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDM-----SKARHLLITILETPG 129 AAEM++RV ++ W+ L +E L + + G P + +AR L +L+ PG Sbjct: 75 AAEMANRVSAVLAGWATLPEEALRGRLASLLGSLPEGEEAIEALSGRARRLFAQVLDCPG 134 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 GL++QTIH FC+ ++++FPLEA + HF + D+ +++ L + A+ + L + + E Sbjct: 135 GLRIQTIHGFCQTLLRRFPLEAGVAPHFEVLDDREAQALHQSARDAVLRAARQAEDGEGG 194 Query: 190 K-----AFYEILEISNDEDIETLISDIISNRTAL 218 A + ++ + +++ + R L Sbjct: 195 DPALAAALAVVTGHLSESRFDEVMAALGGQRGRL 228 >gi|27375863|ref|NP_767392.1| helicase 2 [Bradyrhizobium japonicum USDA 110] gi|27349001|dbj|BAC46017.1| bll0752 [Bradyrhizobium japonicum USDA 110] Length = 1180 Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats. Identities = 83/201 (41%), Positives = 113/201 (56%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + ++ Q ASDPT SA+VSANAGSGKTH+LVQRV+RLLL+ P +LC+T TKAAAA Sbjct: 21 DEVRARQARASDPTASAFVSANAGSGKTHVLVQRVIRLLLSGVPPEKILCITFTKAAAAN 80 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ RV + W L D L A I + P+ +AR L LETPGGLKVQTIH Sbjct: 81 MAERVFTTLGHWVTLDDIALDAAIRAVGIPHPSAKLRREARKLFACALETPGGLKVQTIH 140 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 A C ++QQFP EAN+ + F++ DE ++E A L D +A + Sbjct: 141 ALCTRLLQQFPFEANVPARFSVIDERDQTDMMERANLKVLLEAARDPETVTGRALLTAMA 200 Query: 198 ISNDEDIETLISDIISNRTAL 218 + D + ++ + +R Sbjct: 201 SAADVTFKEVVREACLSRDHF 221 >gi|260575782|ref|ZP_05843778.1| double-strand break repair helicase AddA [Rhodobacter sp. SW2] gi|259021935|gb|EEW25235.1| double-strand break repair helicase AddA [Rhodobacter sp. SW2] Length = 1090 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 72/203 (35%), Positives = 111/203 (54%), Gaps = 8/203 (3%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + + Q+ A+DP RS W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+E Sbjct: 4 NDASARQVQAADPGRSTWLAANAGSGKTRVLTDRVARLLLEGVEPGRILCLTYTKAAASE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGGLKVQTI 136 M +R+ + W+ L D+ L A + + + KAR L +ETPGGL++QTI Sbjct: 64 MQNRLFRRLGGWAMLEDDALRAALADLGVAGAVQPETLGKARQLFARAIETPGGLRIQTI 123 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC +++++FPLEA ++ F D+ + L +E LA +A ++ Sbjct: 124 HSFCASLLRRFPLEAGVSPQFTELDDRAASLLRDEIVDE-LAEFGA------PEAVADLA 176 Query: 197 EISNDEDIETLISDIISNRTALK 219 ED L +++ R + Sbjct: 177 RAYTGEDFSALAAEVAGQRRWFE 199 >gi|77462066|ref|YP_351570.1| UvrD/Rep family helicase [Rhodobacter sphaeroides 2.4.1] gi|77386484|gb|ABA77669.1| Helicase, UvrD/Rep family [Rhodobacter sphaeroides 2.4.1] Length = 1106 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 71/203 (34%), Positives = 107/203 (52%), Gaps = 7/203 (3%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L + Q+ A+DP S W+SANAGSGKT +L RV RLLL P +LCLT+TKAAA Sbjct: 4 LRDEASERQVQAADPRASTWLSANAGSGKTRVLTDRVARLLLDGVEPQRILCLTYTKAAA 63 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM +R+ + W+ L D L + + +++AR L +ETPGGL++QT Sbjct: 64 SEMQNRLFRRLGEWAMLDDAELRRALDALGVAAVGHEVLAQARRLFARAIETPGGLRIQT 123 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC ++++FPLEA ++ F D+ ++ L EE + I + ++ Sbjct: 124 IHSFCATLLRRFPLEAGVSPQFTELDDRAARLLREEIVEELADRIA-------PEVVADL 176 Query: 196 LEISNDEDIETLISDIISNRTAL 218 ED L ++ N L Sbjct: 177 ARAYTGEDFGALAEEVARNAAGL 199 >gi|240141289|ref|YP_002965769.1| putative helicase-exonuclease type V protein family [Methylobacterium extorquens AM1] gi|240011266|gb|ACS42492.1| putative helicase-exonuclease type V protein family [Methylobacterium extorquens AM1] Length = 1147 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 84/199 (42%), Positives = 120/199 (60%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK+ Q A+DP SAWVSANAG+GKT +L RVLRLLL A P +LCLT TKAAAA MS Sbjct: 14 TKAAQRRAADPRLSAWVSANAGAGKTKVLTDRVLRLLLDGAPPGRILCLTFTKAAAANMS 73 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV + + W L D L+AE+T++ G++P + + AR L +ETPGGLK++T+HA Sbjct: 74 IRVFQRLGRWVTLDDAALTAELTELTGERPARDTLRLARRLFARAVETPGGLKIETLHAL 133 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 CE ++ FP EAN+ + F + D+ QS++ E + LA +L N+ L A + + Sbjct: 134 CERLLHMFPFEANVPARFVVLDDNQSREAFEIETDNVLADAILGGNQALSDALAVVGAEA 193 Query: 200 NDEDIETLISDIISNRTAL 218 + + + I + R Sbjct: 194 SGDTLRDAIRSAMRTRALF 212 >gi|163853836|ref|YP_001641879.1| double-strand break repair helicase AddA [Methylobacterium extorquens PA1] gi|163665441|gb|ABY32808.1| double-strand break repair helicase AddA [Methylobacterium extorquens PA1] Length = 1147 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 84/199 (42%), Positives = 120/199 (60%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK+ Q A+DP SAWVSANAG+GKT +L RVLRLLL A P +LCLT TKAAAA MS Sbjct: 14 TKAAQRRAADPRLSAWVSANAGAGKTKVLTDRVLRLLLDGAPPGRILCLTFTKAAAANMS 73 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV + + W L D L+AE+T++ G++P + + AR L +ETPGGLK++T+HA Sbjct: 74 IRVFQRLGRWVTLDDAALTAELTELTGERPARDTLRLARRLFARAVETPGGLKIETLHAL 133 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 CE ++ FP EAN+ + F + D+ QS++ E + LA +L N+ L A + + Sbjct: 134 CERLLHMFPFEANVPARFVVLDDNQSREAFEIETDNVLADAILGGNQALSDALAVVGAEA 193 Query: 200 NDEDIETLISDIISNRTAL 218 + + + I + R Sbjct: 194 SGDTLRDAIRSAMRTRALF 212 >gi|254563798|ref|YP_003070893.1| helicase-exonuclease type V protein family [Methylobacterium extorquens DM4] gi|254271076|emb|CAX27083.1| putative helicase-exonuclease type V protein family [Methylobacterium extorquens DM4] Length = 1147 Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats. Identities = 84/199 (42%), Positives = 120/199 (60%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK+ Q A+DP SAWVSANAG+GKT +L RVLRLLL A P +LCLT TKAAAA MS Sbjct: 14 TKAAQRRAADPRLSAWVSANAGAGKTKVLTDRVLRLLLDGAPPGRILCLTFTKAAAANMS 73 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV + + W L D L+AE+T++ G++P + + AR L +ETPGGLK++T+HA Sbjct: 74 IRVFQRLGRWVTLDDAALTAELTELTGERPARDTLRLARRLFARAVETPGGLKIETLHAL 133 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 CE ++ FP EAN+ + F + D+ QS++ E + LA +L N+ L A + + Sbjct: 134 CERLLHMFPFEANVPARFVVLDDNQSREAFEIETDNVLADAILGGNQALSDALAVVGAEA 193 Query: 200 NDEDIETLISDIISNRTAL 218 + + + I + R Sbjct: 194 SGDTLRDAIRSAMRTRALF 212 >gi|260431946|ref|ZP_05785917.1| double-strand break repair helicase AddA [Silicibacter lacuscaerulensis ITI-1157] gi|260415774|gb|EEX09033.1| double-strand break repair helicase AddA [Silicibacter lacuscaerulensis ITI-1157] Length = 1119 Score = 205 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 119/228 (52%), Gaps = 12/228 (5%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + Q+ A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+E Sbjct: 5 DEATERQVQAARPDASTWLAANAGSGKTRVLTDRVARLLLDGVQPQHILCLTYTKAAASE 64 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKK-PNKSDMSKARHLLITILETPGGLKVQTI 136 M +R+ + + W+ L D L ++T++ + + +++AR L +ETPGGLK+QTI Sbjct: 65 MQNRLFKRLGEWAMLDDVALLRQLTELGVEGVIDPDRLARARTLFARAIETPGGLKIQTI 124 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC +++++FPLEA ++ F+ ++ + L EE + + ++ Sbjct: 125 HSFCASLLRRFPLEAGVSPQFSEMEDRAAALLREEIVEDF-------AEGPQARLIEDVA 177 Query: 197 EISNDEDIETLISDIISNRT----ALKLIFFFFSYLWRRKIIEKSLWS 240 D + L + I RT AL+ + E +L + Sbjct: 178 RHITDTGFDKLTAAIAQKRTLFTPALQWPDLLARFGLPEGFDEDALLA 225 >gi|218532781|ref|YP_002423597.1| double-strand break repair helicase AddA [Methylobacterium chloromethanicum CM4] gi|218525084|gb|ACK85669.1| double-strand break repair helicase AddA [Methylobacterium chloromethanicum CM4] Length = 1147 Score = 205 bits (523), Expect = 4e-51, Method: Composition-based stats. Identities = 84/199 (42%), Positives = 120/199 (60%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK+ Q A+DP SAWVSANAG+GKT +L RVLRLLL A P +LCLT TKAAAA MS Sbjct: 14 TKAAQRRAADPRLSAWVSANAGAGKTKVLTDRVLRLLLDGAPPGRILCLTFTKAAAANMS 73 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV + + W L D L+AE+T++ G++P + + AR L +ETPGGLK++T+HA Sbjct: 74 IRVFQRLGRWVTLDDAALTAELTELTGERPARDTLRLARRLFARAVETPGGLKIETLHAL 133 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 CE ++ FP EAN+ + F + D+ QS++ E + LA +L N+ L A + + Sbjct: 134 CERLLHMFPFEANVPARFVVLDDNQSREAFEIETDNVLADAILGGNQALSDALAVVGAEA 193 Query: 200 NDEDIETLISDIISNRTAL 218 + + + I + R Sbjct: 194 SGDTLRDAIRSAMRTRALF 212 >gi|91974684|ref|YP_567343.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5] gi|91681140|gb|ABE37442.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas palustris BisB5] Length = 1159 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 84/209 (40%), Positives = 118/209 (56%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 S + Q + Q+LASDP+ S +VSANAGSGKTH+LVQRV+RLLL P +LC+T Sbjct: 1 MSAPRSIPDQARERQILASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVPPERILCIT 60 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 TKAAAA M+ RV + W L DE L+A I K S +++AR L LETPG Sbjct: 61 FTKAAAANMAERVFTTLGRWVTLDDEALTAAIKATGIKSVGPSLLAQARKLFACALETPG 120 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 GLKVQTIHA C ++QQFP EAN+ + F++ D+ +L++ A + L + Sbjct: 121 GLKVQTIHALCTRLLQQFPFEANVPARFSVLDDRDQAELMQRASLAVLLQAAAAPDSAAG 180 Query: 190 KAFYEILEISNDEDIETLISDIISNRTAL 218 +A + + D ++ + + R Sbjct: 181 RALTLAMTSAADVTFREVVQEACTRRDRF 209 >gi|319407899|emb|CBI81553.1| ATP-dependent nuclease subunit A [Bartonella schoenbuchensis R1] Length = 1151 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 80/207 (38%), Positives = 124/207 (59%), Gaps = 7/207 (3%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 Q A+ P + WVSANAGSGKTH+L +RV+RLLL P+ +LCLT+T AAA+ M R Sbjct: 12 DAQKKATHPKTNVWVSANAGSGKTHVLSERVIRLLLNGTPPARILCLTYTNAAASVMQSR 71 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + +++W+ L+DE L +++++ K N ++ AR L LETPGGLK+QTIHAFCE Sbjct: 72 IFRTLSSWNELNDEQLQTVLSQLENKPTNTQKLAHARKLFARALETPGGLKIQTIHAFCE 131 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 A++ QFPLE+NI HF + D+ +L+ +A+ LA + ++ A E+ + ++ Sbjct: 132 ALLHQFPLESNIAGHFELLDDTNRTQLLHQARCQLLA------HSHIQSALKELFKTISE 185 Query: 202 EDIETLISDIISNRTALK-LIFFFFSY 227 + L+ + + L + F S Sbjct: 186 STFDQLLHEAAQKQHELSDFLPFILSE 212 >gi|92115690|ref|YP_575419.1| UvrD/REP helicase [Nitrobacter hamburgensis X14] gi|91798584|gb|ABE60959.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrobacter hamburgensis X14] Length = 1162 Score = 205 bits (522), Expect = 4e-51, Method: Composition-based stats. Identities = 80/200 (40%), Positives = 112/200 (56%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 + Q ASDP S +VSANAGSGKTH+LVQRV+RLLL P+ +LC+T TKAAAA M Sbjct: 10 DASARQQRASDPATSVFVSANAGSGKTHVLVQRVIRLLLNGVDPARILCITFTKAAAANM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 S RV + W L DE L+A + +P+ +AR L LETPGGLKVQTIHA Sbjct: 70 SERVFSTLGHWVTLDDEALNAALRDTGIAQPDAWSRQRARKLFAAALETPGGLKVQTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++QQFP EA + + F++ DE ++E A S + + + +A + Sbjct: 130 LCTRLLQQFPFEARVPARFSVLDERDQTGMMERASISVMLDASQNPDSPAGRALQYAMGA 189 Query: 199 SNDEDIETLISDIISNRTAL 218 + D + +++ +R Sbjct: 190 AADTTLRDVVNQACLSRDHF 209 >gi|319404939|emb|CBI78541.1| ATP-dependent nuclease subunit A [Bartonella sp. AR 15-3] Length = 1151 Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats. Identities = 82/210 (39%), Positives = 126/210 (60%), Gaps = 7/210 (3%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+ PT S WVSANAGSGKTH+L +RV+RLLL P+ +LCLT+T AAA+ M R+ Sbjct: 14 QAKATHPTTSVWVSANAGSGKTHVLTERVIRLLLNGTPPARILCLTYTNAAASVMQSRIF 73 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 +++W+ D+ L ++ ++ K N ++ AR L LETPGGLK+QT HAFCE++ Sbjct: 74 CTLSSWNEFDDKQLQTILSNLEDKPANAQKLANARQLFARALETPGGLKIQTFHAFCESL 133 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + QFPLEANI HF + D+ KKL+++A++ L + + + ++ +I ++ Sbjct: 134 LHQFPLEANIAGHFELLDDINRKKLLQQARRKLLT------HRDAQLVLKKLFKIISENT 187 Query: 204 IETLISDIISNRTALKLIF-FFFSYLWRRK 232 + L+ + + L F F FS + K Sbjct: 188 LYQLLYEAAQKQHELSDFFPFIFSESGKEK 217 >gi|188584140|ref|YP_001927585.1| double-strand break repair helicase AddA [Methylobacterium populi BJ001] gi|179347638|gb|ACB83050.1| double-strand break repair helicase AddA [Methylobacterium populi BJ001] Length = 1147 Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats. Identities = 84/199 (42%), Positives = 120/199 (60%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 TK+ Q A+DP SAWVSANAG+GKT +L RVLRLLL A P +LCLT TKAAAA MS Sbjct: 14 TKAAQRRAADPRLSAWVSANAGAGKTKVLTDRVLRLLLDGAPPGRILCLTFTKAAAANMS 73 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV + + W L D L+AE+ ++ G++P + + AR L +ETPGGLK++T+HA Sbjct: 74 IRVFQRLGRWVTLDDAALTAELIELTGERPARDTLRLARRLFARAVETPGGLKIETLHAL 133 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 CE ++ FP EAN+ + F + D+ QS++ E + LA L N++ L AF + + Sbjct: 134 CERLLHMFPFEANVPARFVVLDDNQSREAFEIETDNVLADAFLGNDQTLSDAFAVVGAEA 193 Query: 200 NDEDIETLISDIISNRTAL 218 + + + I + R Sbjct: 194 SGDTLREAIRAAMRTRALF 212 >gi|329891017|ref|ZP_08269360.1| double-strand break repair helicase AddA [Brevundimonas diminuta ATCC 11568] gi|328846318|gb|EGF95882.1| double-strand break repair helicase AddA [Brevundimonas diminuta ATCC 11568] Length = 1119 Score = 204 bits (520), Expect = 8e-51, Method: Composition-based stats. Identities = 82/201 (40%), Positives = 120/201 (59%), Gaps = 3/201 (1%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+DP RS +V+ANAGSGKT LV RV RLLL A PS +LC+T+TKAAAAEM R+ Sbjct: 12 QSRAADPARSVFVTANAGSGKTSTLVNRVARLLLGGAAPSAILCVTYTKAAAAEMQARLF 71 Query: 84 EIITAWSHLSDEILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGLKVQTIHAFC 140 E + W+ + D LSAE+ K+ P N + +S+AR L LETPGGLK+QTIHAFC Sbjct: 72 ETLGKWAVMDDGELSAELAKLDDSDPAALNPARLSEARRLFARALETPGGLKIQTIHAFC 131 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 E ++++FP+EA ++ F + + E + L A++ + + D + +A+ + Sbjct: 132 EKLLRRFPIEAGVSPRFTVLENEAAIALSHAAREDLARAALADAEGPVGEAYSHFAVELD 191 Query: 201 DEDIETLISDIISNRTALKLI 221 + L++ I + R L Sbjct: 192 WGRFQDLLALIEAKRAELTDY 212 >gi|86136735|ref|ZP_01055313.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. MED193] gi|85826059|gb|EAQ46256.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. MED193] Length = 1122 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 71/218 (32%), Positives = 114/218 (52%), Gaps = 7/218 (3%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 Q A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM Sbjct: 12 ASEAQFRAARPDASTWLAANAGSGKTKVLTDRVARLLLKGVQPQHILCLTYTKAAASEMQ 71 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 +R+ + + W+ L D L+A + ++ D+++AR L +ETPGGLK+QTIH+F Sbjct: 72 NRLFQRLGEWAMLQDSELTAALGELGEVNTASEDLAQARTLFARAIETPGGLKIQTIHSF 131 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C +++++FPLEA ++ F+ ++ + L E + + + Sbjct: 132 CSSLLRRFPLEAGVSPQFSEMEDRAASLLRAEIVEDM-------AKRDHAHLVEPLARHV 184 Query: 200 NDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 D E L + I R ++ + + L R + E+ Sbjct: 185 GGSDFEDLTAAICQRRAEFEIALDWPALLARFDLPEEF 222 >gi|121601832|ref|YP_989604.1| double-strand break repair helicase AddA [Bartonella bacilliformis KC583] gi|120614009|gb|ABM44610.1| double-strand break repair helicase AddA [Bartonella bacilliformis KC583] Length = 1155 Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats. Identities = 84/215 (39%), Positives = 126/215 (58%), Gaps = 6/215 (2%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 Q A+ PT S WVSANAGSGKTH+L +RV+RLLL P+ +LCLT+TKAAAA M R Sbjct: 12 DAQATATHPTTSVWVSANAGSGKTHVLSERVIRLLLNGTPPARILCLTYTKAAAAVMQSR 71 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + +++WS L D L +++++ K N ++ AR L LETPGGLK+QTIHAFCE Sbjct: 72 IFRTLSSWSELDDHQLQTILSRLENKPVNAQKLTYARQLFARALETPGGLKIQTIHAFCE 131 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 A++ QF LEANI HF + D+ KKL+++A+ L +++ + ++ +I ++ Sbjct: 132 ALLHQFSLEANIAGHFELLDDISRKKLLQQARCQLLI------HDDAQSLLKQLFKIISE 185 Query: 202 EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 E L+ + + F Y + + + Sbjct: 186 ETFNQLLHEATQKQHEFSDFLSFILYENGEEQLRQ 220 >gi|296532162|ref|ZP_06894922.1| ATP-dependent exoDNAse beta subunit [Roseomonas cervicalis ATCC 49957] gi|296267510|gb|EFH13375.1| ATP-dependent exoDNAse beta subunit [Roseomonas cervicalis ATCC 49957] Length = 943 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 80/212 (37%), Positives = 125/212 (58%), Gaps = 6/212 (2%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66 SET+ + ++ Q ASDP SAWV A+AGSGKT +L RVLRLLL A P +L Sbjct: 17 SAMSETLTPRAAAQAAQRRASDPRASAWVGASAGSGKTKVLTDRVLRLLLRPGAKPGRIL 76 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 CLT TKAAAAEM+ R+ + + W+ D LS + + G+KP+ + +AR L +LE Sbjct: 77 CLTFTKAAAAEMATRLAKRLGEWAVAEDTALSDSLLSLTGEKPDAALRRRARGLFAEVLE 136 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 PGG+++ TIH+FC+++++ FPLEA + FA+ +E + +++ E+++ LAS L Sbjct: 137 QPGGMRISTIHSFCQSLLRGFPLEAGLPPQFALIEEADAAEMLAESRELALASGQL---- 192 Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTAL 218 + A + + + ED + ++ R L Sbjct: 193 -PQAAIEAMAGLGSPEDFAQTLQSLVKERERL 223 >gi|126460955|ref|YP_001042069.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC 17029] gi|126102619|gb|ABN75297.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC 17029] Length = 1106 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 70/201 (34%), Positives = 105/201 (52%), Gaps = 7/201 (3%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + Q+ A+DP S W+SANAGSGKT +L RV RLLL P +LCLT+TKAAA+E Sbjct: 6 DEASERQVQAADPRASTWLSANAGSGKTRVLTDRVARLLLDGVEPQRILCLTYTKAAASE 65 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M +R+ + W+ L D L + + +++AR L +ETPGGL++QTIH Sbjct: 66 MQNRLFRRLGEWAMLDDAELRHALDTLGVAAVGHEVLAQARRLFARAIETPGGLRIQTIH 125 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++++FPLEA ++ F D+ ++ L EE + I ++ Sbjct: 126 SFCATLLRRFPLEAGVSPQFTELDDRAARLLREEIVEELADRIAPG-------VVADLAR 178 Query: 198 ISNDEDIETLISDIISNRTAL 218 ED L ++ N L Sbjct: 179 AYTGEDFGALAEEVARNAAGL 199 >gi|163742590|ref|ZP_02149976.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Phaeobacter gallaeciensis 2.10] gi|161384175|gb|EDQ08558.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Phaeobacter gallaeciensis 2.10] Length = 1122 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 72/202 (35%), Positives = 114/202 (56%), Gaps = 5/202 (2%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 Q A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM Sbjct: 7 ASEAQFRAARPDASTWLAANAGSGKTKVLTDRVARLLLRGVQPQHILCLTYTKAAASEMQ 66 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKK-PNKSDMSKARHLLITILETPGGLKVQTIHA 138 +R+ + + W+ L D+ L++ +T++ + M++AR L +ETPGGLK+QTIH+ Sbjct: 67 NRLFKRLGEWAMLGDDALTSALTELGAHDVISAEGMAQARTLFARAIETPGGLKIQTIHS 126 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC +++++FPLEA ++ F+ D+ + L E + +I N + Sbjct: 127 FCASLLRRFPLEAGVSPQFSEMDDRAAVLLRGE----VVEAIANSENPGEAGLIARLARQ 182 Query: 199 SNDEDIETLISDIISNRTALKL 220 D D +TL + I R+ ++ Sbjct: 183 VTDSDFDTLTAAICQRRSDFEV 204 >gi|126724545|ref|ZP_01740388.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Rhodobacterales bacterium HTCC2150] gi|126705709|gb|EBA04799.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Rhodobacterales bacterium HTCC2150] Length = 1122 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 74/203 (36%), Positives = 114/203 (56%), Gaps = 9/203 (4%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + Q+ A+ P S W+SANAGSGKT +L RV RLLL P +LCLT+TKAAA E Sbjct: 19 NDATEAQVRAAAPMESTWLSANAGSGKTRVLTDRVARLLLEGVPPQKVLCLTYTKAAATE 78 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQT 135 M +R+ + W+ L+D L + ++ + K AR L +ETPGGLK+QT Sbjct: 79 MQNRLFSRLGEWAMLADNELRMALDELGVEPIENTKEARRNARTLFARAIETPGGLKIQT 138 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC A++++FPLEA ++ F D+ +K+L E+ + N + Sbjct: 139 IHSFCAALLRRFPLEAGVSPQFREMDDRAAKRLREDVLEEL-------ANAPETVVLDDF 191 Query: 196 LEISNDEDIETLISDIISNRTAL 218 ++ +D+D +++ +II +R AL Sbjct: 192 VKHLSDDDPASILMEIIRHRDAL 214 >gi|159045978|ref|YP_001534772.1| double-strand break repair helicase AddA [Dinoroseobacter shibae DFL 12] gi|157913738|gb|ABV95171.1| double-strand break repair helicase AddA [Dinoroseobacter shibae DFL 12] Length = 1125 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 69/203 (33%), Positives = 113/203 (55%), Gaps = 9/203 (4%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + Q+ A+DPT S W+SANAGSGKT +L RV RLLL + P +LCLT+TKAAA+E Sbjct: 7 NDATRAQIAAADPTSSVWLSANAGSGKTKVLTDRVARLLLEDVPPERILCLTYTKAAASE 66 Query: 78 MSHRVLEIITAWSHLSDEILSAEITK--IQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 M +R+ + WS L D L + + + + + AR L +ETPGGLK+QT Sbjct: 67 MQNRLFRTLGGWSMLDDGDLRRRLAELGLLQVEITAARCRSARTLFARAIETPGGLKIQT 126 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++++FP+EA ++ F D +L + + + + + Sbjct: 127 IHSFCASLLRRFPMEAGVSPQFTEMDSRAEAELQRAVLRQM-------AEGPGRDSLFAL 179 Query: 196 LEISNDEDIETLISDIISNRTAL 218 + ++ ++ L+ +++S+R AL Sbjct: 180 AQSVDETNLPELMKELLSHREAL 202 >gi|254420948|ref|ZP_05034672.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3] gi|196187125|gb|EDX82101.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3] Length = 1139 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 76/201 (37%), Positives = 118/201 (58%), Gaps = 3/201 (1%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q++A+DP + +V+ANAGSGKT LV RV RLLL P +LC+T+TKAAAAEM R+ Sbjct: 6 QIVAADPRLTVFVTANAGSGKTTTLVNRVARLLLDQVDPGAILCVTYTKAAAAEMQARLF 65 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFC 140 + + W+ L D LS E+ ++ P D +S+AR L LETPGGLK+QTIHAFC Sbjct: 66 DQLGGWAVLDDAALSRELARLDDGDPQAMDHAALSRARKLFARALETPGGLKIQTIHAFC 125 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 E ++++FPLEA ++ F + +++ + L A++ + + + + A+ + Sbjct: 126 EKLLRRFPLEAGVSPRFTVLEDQAATALSHSAREDLARAAVAAPDGPIGLAYSHFAVELD 185 Query: 201 DEDIETLISDIISNRTALKLI 221 + + L+S I + R L Sbjct: 186 WQRFQALLSMIEAKRADLLDY 206 >gi|148251712|ref|YP_001236297.1| DNA helicase/exodeoxyribonuclease V subunit A [Bradyrhizobium sp. BTAi1] gi|146403885|gb|ABQ32391.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bradyrhizobium sp. BTAi1] Length = 1156 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 81/198 (40%), Positives = 113/198 (57%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 + Q AS+P SA+VSANAGSGKTH+LVQRV+RLLL P +LC+T TKAAAA M+ Sbjct: 12 RDAQTRASNPAASAFVSANAGSGKTHVLVQRVIRLLLDGVPPEKILCITFTKAAAANMAE 71 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 RV + W L DE L + I P+K + AR L + LETPGGLKVQTIHA C Sbjct: 72 RVFSTLGHWVTLDDEALDSAIKSTGIPTPDKKLRASARKLFASALETPGGLKVQTIHALC 131 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 ++QQFP EAN+ + F++ DE +++E A L + + +A + + Sbjct: 132 TRLLQQFPFEANVPARFSVLDERDQTEMMERANLKVLLDAARTPDSAVGRALQVAMANAA 191 Query: 201 DEDIETLISDIISNRTAL 218 D + ++ + +R Sbjct: 192 DSTFKEVVREACLSRDHF 209 >gi|163738014|ref|ZP_02145430.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107] gi|161388630|gb|EDQ12983.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107] Length = 1122 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 72/202 (35%), Positives = 114/202 (56%), Gaps = 5/202 (2%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 Q A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM Sbjct: 7 ASEAQFRAARPDASTWLAANAGSGKTKVLTDRVARLLLRGVQPQHILCLTYTKAAASEMQ 66 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKK-PNKSDMSKARHLLITILETPGGLKVQTIHA 138 +R+ + + W+ L D+ L++ +T++ + M++AR L +ETPGGLK+QTIH+ Sbjct: 67 NRLFKRLGEWAMLGDDALTSALTELGAHDVISAEGMAQARTLFARAIETPGGLKIQTIHS 126 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC +++++FPLEA ++ F+ D+ + L E + +I N + Sbjct: 127 FCASLLRRFPLEAGVSPQFSEMDDRAAVLLRGE----VVEAIANSENPGEAGLIARLARQ 182 Query: 199 SNDEDIETLISDIISNRTALKL 220 D D +TL + I R+ ++ Sbjct: 183 VTDSDFDTLTAAICQRRSDFEV 204 >gi|126738527|ref|ZP_01754232.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. SK209-2-6] gi|126720326|gb|EBA17032.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. SK209-2-6] Length = 1126 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 7/199 (3%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 Q A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM Sbjct: 11 ASEAQFRAARPDASTWLAANAGSGKTKVLTDRVARLLLKGVQPQHILCLTYTKAAASEMQ 70 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 +R+ + + W+ L D L+A + + + D+++AR L +ETPGGLK+QTIH+F Sbjct: 71 NRLFKRLGEWAMLEDGKLTAALIDLGEVQITGEDLAQARTLFARAIETPGGLKIQTIHSF 130 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C +++++FPLEA ++ F+ ++ + L E + + + Sbjct: 131 CSSLLRRFPLEAGVSPQFSEMEDRAAALLRAEIVEDF-------AKGDHSHLVEPLARHV 183 Query: 200 NDEDIETLISDIISNRTAL 218 D E L + I R Sbjct: 184 GGSDFEDLTAAICQRRAEF 202 >gi|304320182|ref|YP_003853825.1| helicase, UvrD/Rep family protein [Parvularcula bermudensis HTCC2503] gi|303299085|gb|ADM08684.1| helicase, UvrD/Rep family protein [Parvularcula bermudensis HTCC2503] Length = 1166 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 80/180 (44%), Positives = 115/180 (63%), Gaps = 6/180 (3%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA------NAHPST 64 + +D +++T + Q SDP RSAW+SANAGSGKTH+L+ RV+RLL PS+ Sbjct: 17 NSALDPLAETTAIQQTVSDPRRSAWLSANAGSGKTHVLIGRVIRLLTDLADGGREIDPSS 76 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +LCLT T AAAAEM +R+ +I+ WS LSDE LS +T G+ P + + R L Sbjct: 77 ILCLTFTNAAAAEMKNRLFDILGEWSLLSDEALSDALTTRFGRSPAAPSLMRTRRLFARA 136 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 L+TPGGL+VQTIHAFCE++++QFPLEA + F++ D+ + LI + L ++ + Sbjct: 137 LDTPGGLRVQTIHAFCESLLRQFPLEAGVMPGFSVLDDAEYAALIHRCRWQALRALQAEG 196 >gi|85714148|ref|ZP_01045137.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A] gi|85699274|gb|EAQ37142.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A] Length = 1176 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 80/198 (40%), Positives = 113/198 (57%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 + Q ASDP S +VSANAGSGKTH+LVQRV+RLLL + P+ +LC+T TKAAAA M Sbjct: 22 DASARQQRASDPATSVFVSANAGSGKTHVLVQRVIRLLLNDVPPARILCITFTKAAAANM 81 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + RV + W L D L+A + + +P+ +AR L + LETPGGLKVQTIHA Sbjct: 82 AERVFSTLGHWITLDDGTLNAALRDVGIAQPDARWRERARKLFASALETPGGLKVQTIHA 141 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++QQFP EA + + FA+ DE +++E A + + + +A + Sbjct: 142 LCTRLLQQFPFEAEVPARFAVLDERDQTEMMERASLKVMLDASRNPDSPAGRALRYAMGA 201 Query: 199 SNDEDIETLISDIISNRT 216 + D + +IS R Sbjct: 202 AADSTLRDVISQACLGRD 219 >gi|167648808|ref|YP_001686471.1| double-strand break repair helicase AddA [Caulobacter sp. K31] gi|167351238|gb|ABZ73973.1| double-strand break repair helicase AddA [Caulobacter sp. K31] Length = 1157 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 79/202 (39%), Positives = 122/202 (60%), Gaps = 4/202 (1%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q +A+DP SA+V+ANAGSGKT L+ RV RLLLA + P +LC+T+TKAAAAEM R+ Sbjct: 5 QRIAADPAISAFVTANAGSGKTKTLIDRVARLLLAGSSPEAILCVTYTKAAAAEMQRRLF 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGLKVQTIHAFC 140 E + W D L ++ ++G++P + ++SKAR L LETPGGLK+QTIHAFC Sbjct: 65 ERLGEWCVTPDVKLREQLGALEGREPASFDHRELSKARGLFAKALETPGGLKIQTIHAFC 124 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 E ++++FPLEA ++ F + D+ S + + A + A+ + D+++ +A+ + Sbjct: 125 EKLLRRFPLEAGVSPGFTVMDDSASAAIAQGALRQV-ATWVTDHDDAFAQAYARFSVALD 183 Query: 201 DEDIETLISDIISNRTALKLIF 222 E + + S R A+ Sbjct: 184 FASFEAMFATFESQRGAIGEYL 205 >gi|149201424|ref|ZP_01878399.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp. TM1035] gi|149145757|gb|EDM33783.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp. TM1035] Length = 1123 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 74/200 (37%), Positives = 111/200 (55%), Gaps = 8/200 (4%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 Q+ A+ P S W+SANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM Sbjct: 7 ATQAQVEAARPDLSTWLSANAGSGKTRVLTDRVARLLLDGVDPQHILCLTYTKAAASEMQ 66 Query: 80 HRVLEIITAWSHLSDEILSAEITKI-QGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +R+ + AW+ L+D L E+ + + + AR L +ETPGGLK+QTIH+ Sbjct: 67 NRLFRRLGAWAMLADAALMQELDLLGHEGAITEQTLRDARRLFARAIETPGGLKIQTIHS 126 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC +++++FPLEA++T F ++ + L E + A FY + Sbjct: 127 FCASLLRRFPLEADVTPQFTEMEDRTATLLRAEIVEDLAA-------GPQAATFYALARH 179 Query: 199 SNDEDIETLISDIISNRTAL 218 + E +E L ++I+ NR+ Sbjct: 180 YSGETLEKLTAEIVRNRSGF 199 >gi|86747755|ref|YP_484251.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2] gi|86570783|gb|ABD05340.1| DNA helicase/exodeoxyribonuclease V, subunit A [Rhodopseudomonas palustris HaA2] Length = 1161 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 82/201 (40%), Positives = 115/201 (57%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q + Q+LASDP+ S +VSANAGSGKTH+LVQRV+RLLL P +LC+T TKAAAA Sbjct: 9 DQARERQILASDPSASVFVSANAGSGKTHVLVQRVIRLLLDGVPPERILCITFTKAAAAN 68 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ RV + W L D L+A I K S +++AR L LETPGGLKVQTIH Sbjct: 69 MAERVFTTLGRWVTLDDAALTAAIKATGIKSVGPSLLAQARKLFACALETPGGLKVQTIH 128 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 A C ++QQFP EAN+ + F++ D+ +L++ A + L + +A + Sbjct: 129 ALCTRLLQQFPFEANVPARFSVLDDRDQAELMQRASLAVLLQAAAAPDSAAGRALALAMT 188 Query: 198 ISNDEDIETLISDIISNRTAL 218 + D ++ + +R Sbjct: 189 SAADITFREVVQEACMSRDRF 209 >gi|221641019|ref|YP_002527281.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides KD131] gi|221161800|gb|ACM02780.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides KD131] Length = 1106 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 70/201 (34%), Positives = 105/201 (52%), Gaps = 7/201 (3%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + Q+ A+DP S W+SANAGSGKT +L RV RLLL P +LCLT+TKAAA+E Sbjct: 6 DEASERQVQAADPRASTWLSANAGSGKTRVLTDRVARLLLDGVEPQRILCLTYTKAAASE 65 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M +R+ + W+ L D L + + +++AR L +ETPGGL++QTIH Sbjct: 66 MQNRLFRRLGGWAMLDDAELRHALDTLGVAAVGHEVLAQARRLFARAIETPGGLRIQTIH 125 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++++FPLEA ++ F D+ ++ L EE + I ++ Sbjct: 126 SFCATLLRRFPLEAGVSPQFTELDDRAARLLREEIVEEMADCIAPG-------VVADLAR 178 Query: 198 ISNDEDIETLISDIISNRTAL 218 ED L ++ N L Sbjct: 179 AYTGEDFGALAEEVARNAAGL 199 >gi|49473710|ref|YP_031752.1| ATP-dependent nuclease subunit A [Bartonella quintana str. Toulouse] gi|49239213|emb|CAF25532.1| ATP-dependent nuclease subunit A [Bartonella quintana str. Toulouse] Length = 1157 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 80/193 (41%), Positives = 120/193 (62%), Gaps = 6/193 (3%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 Q A+ P + WVSANAGSGKTH+L +RV+RLLL P+ +LCLT+TKAAAA M R Sbjct: 12 DAQATATHPKTNVWVSANAGSGKTHVLSERVIRLLLNGTSPARILCLTYTKAAAAVMQSR 71 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + +++W+ L D L +++++ K N + AR L LETPGGLK+QTIHAFCE Sbjct: 72 IFRTLSSWNELDDTQLQTILSRLENKPINAQKLIYARQLFARALETPGGLKIQTIHAFCE 131 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 +++ QF LEANI HF + D+ KKL++E+++ LA + + + A ++L++ N+ Sbjct: 132 SLLHQFMLEANIAGHFELLDDISRKKLLQESRRQLLA------HHDAQSALKQLLKVINE 185 Query: 202 EDIETLISDIISN 214 L+ + Sbjct: 186 HTFNQLLYEATEK 198 >gi|114769726|ref|ZP_01447336.1| ATP-dependent DNA helicase, UvrD/Rep family protein [alpha proteobacterium HTCC2255] gi|114549431|gb|EAU52313.1| ATP-dependent DNA helicase, UvrD/Rep family protein [alpha proteobacterium HTCC2255] Length = 1125 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 77/203 (37%), Positives = 118/203 (58%), Gaps = 9/203 (4%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + Q+ A++P ++ WVSANAGSGKT +L RV RLLL N P +LCLT+TKAAAAE Sbjct: 4 NDATLAQIYAANPIKNTWVSANAGSGKTRVLTDRVARLLLNNTDPQKILCLTYTKAAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKK--PNKSDMSKARHLLITILETPGGLKVQT 135 M +R+ + + W+ L DE L E+ + + + + +AR L LETPGGLK+QT Sbjct: 64 MQNRLFDSLGKWAMLPDEELRTELKSLGENENTLSPDKIKQARTLFAAALETPGGLKIQT 123 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC+A++++FPLEA ++ F + +E Q+K+L E + + L K + Sbjct: 124 IHSFCDALLRRFPLEAGVSPQFNMLEERQAKQLRIEVVERMAQQSETSEIDMLAKHLTRL 183 Query: 196 LEISNDEDIETLISDIISNRTAL 218 + + L ++I+ RT Sbjct: 184 -------NTDDLTNEIVKKRTGF 199 >gi|6626267|gb|AAF19532.1| putative helicase 2 [Bradyrhizobium japonicum] Length = 591 Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats. Identities = 81/201 (40%), Positives = 111/201 (55%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + ++ Q +ASDP SA+VSANAGSGKTH+LVQRV+RLLL+ P +LC+T TKAAAA Sbjct: 10 DEVRARQAVASDPAASAFVSANAGSGKTHVLVQRVIRLLLSGVPPEKILCITFTKAAAAN 69 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ RV + W L D L A I + P+ +A L LETPGGLKVQTIH Sbjct: 70 MAERVFTTLGHWVTLDDIALDAAIRAVGIPHPSAKLRREAERLFACALETPGGLKVQTIH 129 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 A C ++QQFP EAN+ + F++ DE ++E A L D A + Sbjct: 130 ALCTRLLQQFPFEANVPARFSVIDERDQTDMMERANLKVLLEAGADRKRSQAGALLTGMA 189 Query: 198 ISNDEDIETLISDIISNRTAL 218 + D + ++ + +R Sbjct: 190 SAADVTFKEVVREACLSRDHF 210 >gi|254453452|ref|ZP_05066889.1| double-strand break repair helicase AddA [Octadecabacter antarcticus 238] gi|198267858|gb|EDY92128.1| double-strand break repair helicase AddA [Octadecabacter antarcticus 238] Length = 1128 Score = 201 bits (512), Expect = 5e-50, Method: Composition-based stats. Identities = 73/202 (36%), Positives = 115/202 (56%), Gaps = 8/202 (3%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q+ A+DPTRS W+SANAGSGKT +L RV RLLLA P +LCLT+TKAAA+E Sbjct: 4 DDATRRQIEAADPTRSTWLSANAGSGKTRVLTDRVARLLLAGTRPENVLCLTYTKAAASE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLKVQTI 136 M +R+ + + W+ ++ L ++ ++ + +S AR L + +ETPGGLK+QTI Sbjct: 64 MQNRLFQRLGEWAMMAKPALHKQLVELGTDVAIDDDYLSNARTLFASAIETPGGLKIQTI 123 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC ++++FPLEA ++ F ++ ++ L EE L + N+ + F Sbjct: 124 HSFCAGVLRRFPLEAEVSPQFKEMEDRDAQLLREE----VLDEMATGNHADEVAGFA--- 176 Query: 197 EISNDEDIETLISDIISNRTAL 218 ++ ++ I S R+A Sbjct: 177 RHYTGAEVGNFLAAITSRRSAF 198 >gi|49474856|ref|YP_032897.1| ATP-dependent nuclease subunit A [Bartonella henselae str. Houston-1] gi|49237661|emb|CAF26843.1| ATP-dependent nuclease subunit A [Bartonella henselae str. Houston-1] Length = 1160 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 79/197 (40%), Positives = 120/197 (60%), Gaps = 6/197 (3%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 Q A+ P + WVSANAGSGKTH+L +RV+RLLL P+ +LCLT+TKAAAA M R Sbjct: 12 DAQATATHPKTNVWVSANAGSGKTHVLSERVIRLLLNGTPPARILCLTYTKAAAAVMQSR 71 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + +++W+ L D L +++++ K ++ AR L LETPGGLK+QTIHAFCE Sbjct: 72 IFRTLSSWNELDDTQLQQTLSQLENKPITAQKLTYARQLFARALETPGGLKIQTIHAFCE 131 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 +++ F LEANI HF + D+ KKL++EA++ L +E + A ++L++ ++ Sbjct: 132 SLLHHFMLEANIAGHFELVDDISRKKLLQEARRQLLE------HESAQSALKQLLKVISE 185 Query: 202 EDIETLISDIISNRTAL 218 L+ + + L Sbjct: 186 HTFNQLLYEATEKQHKL 202 >gi|85705745|ref|ZP_01036842.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp. 217] gi|85669735|gb|EAQ24599.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp. 217] Length = 1123 Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats. Identities = 75/200 (37%), Positives = 111/200 (55%), Gaps = 8/200 (4%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 Q+ A+ P S W+SANAGSGKT +L RV RLLL +P +LCLT+TKAAA+EM Sbjct: 7 ATQAQVEAARPDLSTWLSANAGSGKTRVLTDRVARLLLDGVNPQHILCLTYTKAAASEMQ 66 Query: 80 HRVLEIITAWSHLSDEILSAEITKI-QGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +R+ + AW+ L+D+ L E+ + + AR L +ETPGGLK+QTIH+ Sbjct: 67 NRLFRRLGAWAMLADDALMQELDLLGHEGAITDQTLRDARRLFARAIETPGGLKIQTIHS 126 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC +++++FPLEA +T F ++ + L E + A FY + Sbjct: 127 FCASLLRRFPLEAGVTPQFTEMEDRTATLLRAEIVEDLAA-------GPHAATFYALARH 179 Query: 199 SNDEDIETLISDIISNRTAL 218 + E +E L +DI+ +RT Sbjct: 180 YSGETLEKLTADIVRHRTGF 199 >gi|294675594|ref|YP_003576209.1| UvrD/REP helicase family protein [Rhodobacter capsulatus SB 1003] gi|294474414|gb|ADE83802.1| UvrD/REP helicase family protein [Rhodobacter capsulatus SB 1003] Length = 1121 Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats. Identities = 80/202 (39%), Positives = 120/202 (59%), Gaps = 8/202 (3%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + Q+ A+DP S W++ANAGSGKT +L RV RLLLA P +LCLT+TKAAAAE Sbjct: 5 NPASERQVQAADPAASTWLAANAGSGKTKVLTDRVARLLLAGTEPQKVLCLTYTKAAAAE 64 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQTI 136 M +R+L+ + W+ L D L A++ + P + +++AR L +ETPGGLK+QTI Sbjct: 65 MQNRLLKRLGDWAMLPDADLRAQLAALGECGPLDAESLARARRLFAQAIETPGGLKIQTI 124 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFC A++++FPLEA ++ FA D+ + ++ EE L I + + F L Sbjct: 125 HAFCGALLRRFPLEAGVSHGFAEIDDRTAARMREE----VLEEIASGPDRPVLDLF---L 177 Query: 197 EISNDEDIETLISDIISNRTAL 218 + D+ +I++I +R A Sbjct: 178 QAFTGADLTGMIAEISHDRDAF 199 >gi|21328716|gb|AAM48722.1| helicase, UvrD/Rep family [uncultured marine proteobacterium] Length = 1118 Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats. Identities = 72/198 (36%), Positives = 111/198 (56%), Gaps = 8/198 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 +S Q+ A+ P RS W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+ Sbjct: 3 LSDASLRQIEAAHPGRSTWLAANAGSGKTRVLTDRVARLLLDGVMPQNILCLTYTKAAAS 62 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +R+ + + W+ L D L E+ + + D+ +AR L +E PGGLK+QT Sbjct: 63 EMQNRLFKRLGRWTMLDDVTLLDELAALGVERDLGPDDIDRARTLFARAVEAPGGLKIQT 122 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC AI+++F LEA + F DE L++E ++ + + + +F I Sbjct: 123 IHSFCAAILRRFSLEAGVNPQFVEIDERAQNLLLDEVVEAI-------ADGQGQSSFDGI 175 Query: 196 LEISNDEDIETLISDIIS 213 E D++ + I++ Sbjct: 176 AEHFTGPDLQKFLHAILN 193 >gi|254465049|ref|ZP_05078460.1| double-strand break repair helicase AddA [Rhodobacterales bacterium Y4I] gi|206685957|gb|EDZ46439.1| double-strand break repair helicase AddA [Rhodobacterales bacterium Y4I] Length = 1117 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 70/199 (35%), Positives = 106/199 (53%), Gaps = 7/199 (3%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 Q A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM Sbjct: 7 ASEAQFRAARPDASTWLAANAGSGKTKVLTDRVARLLLKGVQPQHVLCLTYTKAAASEMQ 66 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 +R+ + + W+ L D L+ +T++ D+++AR L +ETPGGLK+QTIH+F Sbjct: 67 NRLFKRLGEWAMLEDAALTDALTELGEVSTAVEDLAQARTLFARAIETPGGLKIQTIHSF 126 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C +++++FPLEA ++ F+ D+ + L E + + Sbjct: 127 CSSLLRRFPLEAGVSPQFSEMDDRAGQLLRAEIMEDF-------AQGPHASQVDALARHV 179 Query: 200 NDEDIETLISDIISNRTAL 218 +D D E L + I R Sbjct: 180 SDSDFEMLTAAICQRRADF 198 >gi|146278983|ref|YP_001169142.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC 17025] gi|145557224|gb|ABP71837.1| UvrD-like DNA helicase, C terminal [Rhodobacter sphaeroides ATCC 17025] Length = 1119 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 70/201 (34%), Positives = 108/201 (53%), Gaps = 7/201 (3%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + Q+ A+DP S W+SANAGSGKT +L RV RLLL P +LCLT+TKAAA+E Sbjct: 20 DEASERQVQAADPRASTWLSANAGSGKTRVLTDRVARLLLDGVEPQRILCLTYTKAAASE 79 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M +R+ + W+ L D L A + + + +++AR L +ETPGGL++QTIH Sbjct: 80 MQNRLFRRLGEWAMLEDAALRAALDALGVEAVGHEVLAQARRLFARAIETPGGLRIQTIH 139 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++++FPLEA ++ F D+ ++ L +E + + E+ Sbjct: 140 SFCATLLRRFPLEAGVSPQFTELDDRAARLLRDEILEEM-------ADRTAPALVAELAR 192 Query: 198 ISNDEDIETLISDIISNRTAL 218 E+ L ++ NR L Sbjct: 193 AYTGEEFGALAEEVARNRAGL 213 >gi|254439061|ref|ZP_05052555.1| double-strand break repair helicase AddA [Octadecabacter antarcticus 307] gi|198254507|gb|EDY78821.1| double-strand break repair helicase AddA [Octadecabacter antarcticus 307] Length = 1128 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 70/202 (34%), Positives = 117/202 (57%), Gaps = 8/202 (3%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + Q+ A+DPT+S W+SANAGSGKT +L +RV RLLLA P +LCLT+TKAAA+E Sbjct: 4 NDATRRQIEAADPTQSTWLSANAGSGKTRVLTERVARLLLAGTRPENVLCLTYTKAAASE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTI 136 M +R+ + + W+ + L ++ ++ + D +S AR L + +ETPGGLK+QTI Sbjct: 64 MQNRLFQRLGEWAMMPKPALHKQLVELGTEAAIDDDYLSNARTLFASAIETPGGLKIQTI 123 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC ++++FPLEA ++ F ++ ++ L E + L + ++ + A Sbjct: 124 HSFCAGVLRRFPLEAEVSPQFKEMEDRAAQLLRE----NVLDEMATGDHAD---AVAGFA 176 Query: 197 EISNDEDIETLISDIISNRTAL 218 ++ ++ I + R+A Sbjct: 177 RHYTGAEVGKFLAAITARRSAF 198 >gi|298290318|ref|YP_003692257.1| double-strand break repair helicase AddA [Starkeya novella DSM 506] gi|296926829|gb|ADH87638.1| double-strand break repair helicase AddA [Starkeya novella DSM 506] Length = 1144 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 87/214 (40%), Positives = 126/214 (58%), Gaps = 4/214 (1%) Query: 10 HSETIDL----ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 SE DL + + Q ASDP SAWVSANAGSGKTH+L +RV+RLL+ P + Sbjct: 1 MSELTDLAPGPLRAATALQTTASDPLLSAWVSANAGSGKTHVLARRVIRLLMRGVPPGRI 60 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 LCLT+TKAAAA M++RVL+ + W+ L DE L EI + G +P+ + AR L L Sbjct: 61 LCLTYTKAAAANMANRVLDELRRWATLDDETLDKEIVRTDGGRPDALRRAHARRLFAQAL 120 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 ETPGGLK+QTIHAFC A++ FP EA + + F +E +L+ + + Sbjct: 121 ETPGGLKIQTIHAFCGALLHAFPFEAGVPAGFGELEEAARLELLARVRADVVLEAAGRPE 180 Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALK 219 L +A I+ ++D+ I+ +I ++++ AL+ Sbjct: 181 SALGQALGLIVGTTSDDGIDEIIGAMVADPAALE 214 >gi|146337257|ref|YP_001202305.1| helicase-exonuclease type V family protein AddA subunit [Bradyrhizobium sp. ORS278] gi|146190063|emb|CAL74055.1| putative helicase-exonuclease type V protein family, addA subunit [Bradyrhizobium sp. ORS278] Length = 1156 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 79/198 (39%), Positives = 112/198 (56%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 + Q AS+P SA+VSANAGSGKTH+LVQRV+RLLL P +LC+T TKAAAA M+ Sbjct: 12 RDAQTRASNPAASAFVSANAGSGKTHVLVQRVIRLLLDGVPPEKILCITFTKAAAANMAE 71 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 RV + W L D L + I +K + AR L + LETPGGLKVQTIHA C Sbjct: 72 RVFSTLGHWVTLDDGALDSAIKSTGILTSDKKLRASARKLFASALETPGGLKVQTIHALC 131 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 ++QQFP EAN+ + F++ DE +++E A L + + + +A + + Sbjct: 132 TRLLQQFPFEANVPARFSVLDERDQTEMMERANLKVLLNAARAPDSPIGRALQIAMANAA 191 Query: 201 DEDIETLISDIISNRTAL 218 D + ++ + +R Sbjct: 192 DSTFKEVVREACLSRDHF 209 >gi|296448609|ref|ZP_06890479.1| double-strand break repair helicase AddA [Methylosinus trichosporium OB3b] gi|296253881|gb|EFH01038.1| double-strand break repair helicase AddA [Methylosinus trichosporium OB3b] Length = 1145 Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats. Identities = 92/207 (44%), Positives = 137/207 (66%), Gaps = 1/207 (0%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 S+ + T+ +Q +ASDP SAWVSA+AGSGKTH+L QRV+RLLLA A PS +LCLT Sbjct: 1 MSDRRPIAQDTREKQRIASDPGLSAWVSAHAGSGKTHVLSQRVVRLLLAGASPSHILCLT 60 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 +TKAAAA M+ R+ +I+ W+ L DE L+A I +P +D+++AR L +ETPG Sbjct: 61 YTKAAAANMAARIFDILAGWALLDDEALAAAIMATGAPRPFPADLARARKLFAHAVETPG 120 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 GLK+QTIHAFCE ++ FP EAN+++ F + D+ + +L+E A+++TLA LD L+ Sbjct: 121 GLKIQTIHAFCERLLHLFPFEANVSASFRVLDDLERAELLERARRNTLARAALDGG-ALQ 179 Query: 190 KAFYEILEISNDEDIETLISDIISNRT 216 A ++ + + + LI +++ R Sbjct: 180 GALAKLSRLCSGGGFDDLIRELLGRRE 206 >gi|240849707|ref|YP_002971095.1| double-strand break repair helicase AddA [Bartonella grahamii as4aup] gi|240266830|gb|ACS50418.1| double-strand break repair helicase AddA [Bartonella grahamii as4aup] Length = 1158 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 79/193 (40%), Positives = 120/193 (62%), Gaps = 6/193 (3%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 Q A+ P ++ WVSANAGSGKTH+L +RV+RLLL P+ +LCLT+T+AAAA M R Sbjct: 12 DAQATATHPQKNVWVSANAGSGKTHVLSERVIRLLLNGTPPARILCLTYTRAAAAVMQSR 71 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + +++W+ L D L +T+ + K N ++ AR L LETPGGLK+QTIHAFCE Sbjct: 72 IFRTLSSWNELDDAQLQETLTRFEKKTVNAQKLTYARQLFARALETPGGLKIQTIHAFCE 131 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 +++ QF LEANI HF + DE KKL++E+++ LA +++ A ++ ++ ++ Sbjct: 132 SLLHQFMLEANIAGHFELPDEISRKKLLQESRRQLLAR------RDVQPALQQLFKVISE 185 Query: 202 EDIETLISDIISN 214 L+ + Sbjct: 186 HTFNQLLYEATEK 198 >gi|149912864|ref|ZP_01901398.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. AzwK-3b] gi|149813270|gb|EDM73096.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. AzwK-3b] Length = 1123 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 70/202 (34%), Positives = 110/202 (54%), Gaps = 8/202 (3%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q+ A+ P RS W+SANAGSGKT +L RV RLLL + P +LCLT+TKAAA+E Sbjct: 4 DDATQRQIDAARPDRSTWLSANAGSGKTRVLTDRVARLLLEDVDPRHILCLTYTKAAASE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKI-QGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 M +R+ + + W+ L D+ LS E+ + + + KAR L +E PGGLK+QTI Sbjct: 64 MQNRLFKRLGQWAMLPDDRLSRELQDLGHEGLIDADTLRKARRLFARAIEAPGGLKIQTI 123 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC ++++FPLEA ++ F ++ + L E ++ + Y Sbjct: 124 HSFCAGLLRRFPLEAGVSPQFTEMEDRTASLLRSEITEAI-------ASGPDAATLYAFA 176 Query: 197 EISNDEDIETLISDIISNRTAL 218 E ++ + ++I+ +RT Sbjct: 177 RHYGGESLDDITAEIVRHRTLF 198 >gi|163867331|ref|YP_001608525.1| ATP-dependent nuclease subunit A [Bartonella tribocorum CIP 105476] gi|161016972|emb|CAK00530.1| ATP-dependent nuclease subunit A [Bartonella tribocorum CIP 105476] Length = 1157 Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats. Identities = 78/193 (40%), Positives = 121/193 (62%), Gaps = 6/193 (3%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 Q A+ P ++ WVSANAGSGKTH+L +RV+RLLL P+ +LCLT+T+AAAA M R Sbjct: 12 DAQATATHPQKNVWVSANAGSGKTHVLSERVIRLLLNGTPPARILCLTYTRAAAAVMQSR 71 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + +++W+ L D L +T+ + K N ++ AR L LETPGGLK+QTIHAFCE Sbjct: 72 IFRTLSSWNELDDAQLQETLTRFENKPVNAQKLTYARQLFARALETPGGLKIQTIHAFCE 131 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 +++ QF LEANI HF + D+ +KL +E++ LA +++ A ++L++ ++ Sbjct: 132 SLLHQFMLEANIAGHFELPDDISREKLRQESRCQLLAR------RDVQPALQQLLQVISE 185 Query: 202 EDIETLISDIISN 214 + L+ + + Sbjct: 186 HNFNQLLYEAVEK 198 >gi|83942010|ref|ZP_00954472.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter sp. EE-36] gi|83847830|gb|EAP85705.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter sp. EE-36] Length = 1125 Score = 198 bits (504), Expect = 6e-49, Method: Composition-based stats. Identities = 68/202 (33%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q+ A+ P S W+ ANAGSGKT +L RV RLLL P +LCLT+TKAAA+E Sbjct: 6 DDATRAQIDAARPDASTWLGANAGSGKTRVLTDRVARLLLNGVEPQHILCLTYTKAAASE 65 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQTI 136 M +R+ + + AW+ L+D L ++++ K + AR L +ETPGGLK+QTI Sbjct: 66 MQNRLFKRLGAWAMLTDADLRHSLSELGVKDGFTPEKLRMARTLFARAIETPGGLKIQTI 125 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC +++++FPLEA ++ F ++ + L E + + + Sbjct: 126 HSFCASLLRRFPLEAGVSPQFTEIEDRAADLLRAEIVDTM-------AEGQDAALITTLA 178 Query: 197 EISNDEDIETLISDIISNRTAL 218 + ED L I+ R Sbjct: 179 RMYTGEDFSKLTRSIVGQREGF 200 >gi|83953059|ref|ZP_00961781.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter sp. NAS-14.1] gi|83842027|gb|EAP81195.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sulfitobacter sp. NAS-14.1] Length = 1125 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 8/202 (3%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q+ A+ P S W+ ANAGSGKT +L RV RLLL P +LCLT+TKAAA+E Sbjct: 6 DDATRAQIDAARPDASTWLGANAGSGKTRVLTDRVARLLLNGVEPQHILCLTYTKAAASE 65 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQTI 136 M +R+ + + AW+ L+D L ++++ + + AR L +ETPGGLK+QTI Sbjct: 66 MQNRLFKRLGAWAMLTDADLRHSLSELGVEDGFTPEKLRMARTLFARAIETPGGLKIQTI 125 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC +++++FPLEA ++ F ++ + L E + + + Sbjct: 126 HSFCASLLRRFPLEAGVSPQFTEIEDRAADLLRAEIVDTM-------AEGQDAALITTLA 178 Query: 197 EISNDEDIETLISDIISNRTAL 218 + ED L I+ R Sbjct: 179 RMYTGEDFSKLTRSIVGQREGF 200 >gi|315497132|ref|YP_004085936.1| double-strand break repair helicase adda [Asticcacaulis excentricus CB 48] gi|315415144|gb|ADU11785.1| double-strand break repair helicase AddA [Asticcacaulis excentricus CB 48] Length = 1168 Score = 197 bits (502), Expect = 9e-49, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 125/230 (54%), Gaps = 14/230 (6%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+DP S +++ANAGSGKT LV RV RLLL A P +LC+T+TKAAAAEM R+ Sbjct: 4 QNAAADPEVSCFLTANAGSGKTSTLVNRVARLLLRGAKPEHILCVTYTKAAAAEMQGRLY 63 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 E + W+ D L+ E+ KI N D++ AR L LETPGGLK+QTIHAFCE + Sbjct: 64 ERLGGWAVAEDAALAEELRKIDE---NPDDLATARALFAKALETPGGLKIQTIHAFCEKL 120 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA-----FYEIL-- 196 +++FPLEA ++ F + D+ ++ L ++A + L + + L + F ++L Sbjct: 121 LRRFPLEAGLSPSFQVLDDLVARDLAQKALEGLLTLPEGAHRDHLIRTLKAQKFEQLLTQ 180 Query: 197 ----EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 E ++ L++D N + F L E+ + + A Sbjct: 181 FIYQHDRIREALDHLLADAKRNDLSFSGYLFKRLDLDPPMTPEQVVDAFA 230 >gi|163732946|ref|ZP_02140390.1| ATP-dependent DNA nuclease, putative [Roseobacter litoralis Och 149] gi|161393481|gb|EDQ17806.1| ATP-dependent DNA nuclease, putative [Roseobacter litoralis Och 149] Length = 1125 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 68/202 (33%), Positives = 108/202 (53%), Gaps = 8/202 (3%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 Q+ A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM Sbjct: 6 PATQAQVDAARPDASTWLAANAGSGKTRVLTDRVARLLLDKVEPEHILCLTYTKAAASEM 65 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLKVQTIH 137 +R+ + + W+ L D L+ + + + + + KAR L +ETPGGLK+QTIH Sbjct: 66 QNRLFKRLGEWAMLEDAALAEALRDLGVETTVDAEKLRKARTLFARAIETPGGLKIQTIH 125 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC +++++FPLEA ++ F+ +E + L E + ++ Sbjct: 126 SFCASLLRRFPLEAGVSPQFSEIEERAADLLRAEIIDTM-------AQGPDAGLIADLAR 178 Query: 198 ISNDEDIETLISDIISNRTALK 219 ED E L ++ N+ + + Sbjct: 179 HYTGEDFEKLAKAVVQNKDSFR 200 >gi|126734388|ref|ZP_01750135.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. CCS2] gi|126717254|gb|EBA14118.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseobacter sp. CCS2] Length = 1112 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 77/217 (35%), Positives = 118/217 (54%), Gaps = 14/217 (6%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 Q+ A+DP S W+SANAGSGKT +L RV RLLL P +LCLT+TKAAAAEM Sbjct: 6 ATQRQVDAADPRISTWLSANAGSGKTRVLTDRVARLLLEEVSPQNILCLTYTKAAAAEMQ 65 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +R+ + + AW+ +SD LSAE+ + ++ + S +S+AR L +ETPGGLK+QTIH+ Sbjct: 66 NRLFQRLGAWAMMSDTELSAELLALGVDRQIDSSQLSQARTLFARAIETPGGLKIQTIHS 125 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC ++++FPLEA ++ F ++ ++ L E + + +L Sbjct: 126 FCAGVLRRFPLEAQVSPQFREMEDRAAQILRAEVVDEMVM-------GPQANVVHSLLAH 178 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 +++ ++I R +F R I E Sbjct: 179 FTGSELDQFTAEIAGKRE------YFLQKPDRNAISE 209 >gi|114762246|ref|ZP_01441714.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Pelagibaca bermudensis HTCC2601] gi|114545270|gb|EAU48273.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Roseovarius sp. HTCC2601] Length = 1125 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 71/202 (35%), Positives = 111/202 (54%), Gaps = 9/202 (4%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + Q+ A+ P S W+SANAGSGKT +L RV RLLL P +LCLT+TKAAA E Sbjct: 4 DEATEAQVRAARPDLSTWLSANAGSGKTRVLTDRVARLLLDGVLPEHILCLTYTKAAATE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPN-KSDMSKARHLLITILETPGGLKVQTI 136 M +R+ + AW+ L DE L AE+ ++ P ++ AR L +ETPGGL++QTI Sbjct: 64 MQNRLFRRLGAWAMLDDEALGAELRQLGLDGPLPPERLAGARTLFARAIETPGGLRIQTI 123 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC +++++FPLEA ++ F ++ ++ L E + + E+ Sbjct: 124 HSFCASLLRRFPLEAGVSPQFHEMEDRAAQLLRAEVLDRL-------SEGPQQALVAELA 176 Query: 197 EISNDEDIETLISDIISNRTAL 218 D D + L++++ + A Sbjct: 177 RHLTD-DPDKLLAEMCRTKEAF 197 >gi|56698684|ref|YP_169061.1| ATP-dependent DNA helicase UvrD [Ruegeria pomeroyi DSS-3] gi|56680421|gb|AAV97087.1| ATP-dependent DNA helicase, UvrD/Rep family [Ruegeria pomeroyi DSS-3] Length = 1118 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 119/228 (52%), Gaps = 12/228 (5%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + Q+ A+ P S W++ANAGSGKT +L RV RLLL++ P +LCLT+TKAAA+E Sbjct: 5 NAATERQVQAARPDTSTWLAANAGSGKTKVLTDRVARLLLSDVQPQHILCLTYTKAAASE 64 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGGLKVQTI 136 M +R+ + + W+ L+D L A+++ + + + ++ AR L +ETPGGLK+QTI Sbjct: 65 MQNRLFKRLGEWAMLADAPLRAQLSDLGVPGAIDDARLAHARTLFARAIETPGGLKIQTI 124 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC ++++FPLEA ++ F+ ++ + L EE + A ++ Sbjct: 125 HSFCATLLRRFPLEAKVSPQFSEMEDRAAALLREEIVEDLAA-------GPQAALVSDLA 177 Query: 197 EISNDEDIETLISDIISNRTA----LKLIFFFFSYLWRRKIIEKSLWS 240 D D +L + I R A L + ++L S Sbjct: 178 RHITDTDFASLTAAICQQRAAFAQPLDWAGLLTLFDLPEGFDTQALLS 225 >gi|260429599|ref|ZP_05783576.1| double-strand break repair helicase AddA [Citreicella sp. SE45] gi|260420222|gb|EEX13475.1| double-strand break repair helicase AddA [Citreicella sp. SE45] Length = 1118 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 72/202 (35%), Positives = 112/202 (55%), Gaps = 9/202 (4%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + Q+ A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA E Sbjct: 4 DEATEAQVRAARPDSSTWLAANAGSGKTRVLTDRVARLLLDGVLPEHILCLTYTKAAATE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKI-QGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 M +R+ + AW+ L DE L AE+ ++ ++ AR L +ETPGGL++QTI Sbjct: 64 MQNRLFRRLGAWAMLDDEALRAELRQLGLEGALPPERLAGARTLFARAIETPGGLRIQTI 123 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC +++++FPLEA ++ F ++ ++ L E L + L + L Sbjct: 124 HSFCASLLRRFPLEAGVSPQFHEMEDRAAQLLRTE----VLDRLSEGPQAGLVADLAQWL 179 Query: 197 EISNDEDIETLISDIISNRTAL 218 E+ + L++++ NR A Sbjct: 180 P----ENYDALLAELCGNRAAF 197 >gi|126732963|ref|ZP_01748724.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sagittula stellata E-37] gi|126706580|gb|EBA05656.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Sagittula stellata E-37] Length = 1123 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 69/204 (33%), Positives = 114/204 (55%), Gaps = 8/204 (3%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + + Q+ A+ P S W++ANAGSGKT +L RV RLLL PS +LCLT+TKAAA Sbjct: 1 MRDEATQRQVDAAAPDASTWLAANAGSGKTRVLTDRVARLLLEGVDPSHILCLTYTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLKVQ 134 EM +R+ + + AW+ L + L E+ + + P+ + + +AR L +ETPGGL++Q Sbjct: 61 TEMQNRLFKRLGAWAMLPEPDLRDELAALGVETAPSHAFLQEARTLFARAIETPGGLRIQ 120 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TIH+FC +++++FPLEA ++ F ++ ++ L E L I + + Sbjct: 121 TIHSFCASLLRRFPLEARVSPQFQEMEDRAAELLRAE----ILDQIASGPD---RGLLEG 173 Query: 195 ILEISNDEDIETLISDIISNRTAL 218 I + +D L++ + + R Sbjct: 174 IAPWVSGDDPGKLLAALSARRDVF 197 >gi|254488041|ref|ZP_05101246.1| double-strand break repair helicase AddA [Roseobacter sp. GAI101] gi|214044910|gb|EEB85548.1| double-strand break repair helicase AddA [Roseobacter sp. GAI101] Length = 1125 Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats. Identities = 72/204 (35%), Positives = 105/204 (51%), Gaps = 12/204 (5%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q+ A+ P S W+ ANAGSGKT +L RV RLLL P +LCLT+TKAAA+E Sbjct: 6 DDATRAQIDAARPDASTWLGANAGSGKTRVLTDRVARLLLNEVEPQHILCLTYTKAAASE 65 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQTI 136 M +R+ + + AW+ L D L A + ++ + AR L +ETPGGLK+QTI Sbjct: 66 MQNRLFKRLGAWAMLKDADLRASLAELGVTDAFTPEKLRMARTLFARAIETPGGLKIQTI 125 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA--FYE 194 H+FC +++++FPLEA ++ F ++ + L E DN E + A Sbjct: 126 HSFCASLLRRFPLEAGVSPQFTEIEDRAADLLRAEIV---------DNMAEGRDAPLVTA 176 Query: 195 ILEISNDEDIETLISDIISNRTAL 218 + ED L + I+ R Sbjct: 177 LARHYTGEDFSKLTNSIVGQREGF 200 >gi|254463307|ref|ZP_05076723.1| double-strand break repair helicase AddA [Rhodobacterales bacterium HTCC2083] gi|206679896|gb|EDZ44383.1| double-strand break repair helicase AddA [Rhodobacteraceae bacterium HTCC2083] Length = 1122 Score = 195 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 8/206 (3%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 ++ + Q+ A+ P S W+SANAGSGKT +L RV RLLLA P +LCLT+TKA Sbjct: 1 MNARNDASQAQVDAARPRMSTWLSANAGSGKTRVLTDRVARLLLAQVPPERILCLTYTKA 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLK 132 AAAEM +R+ + + W+ L + L + ++ + +K+ + AR L +E PGGLK Sbjct: 61 AAAEMQNRLFKRLGEWAMLENSALREALRELGEEGGIDKNALRMARTLFAAAIEAPGGLK 120 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 +QTIH+FC ++++FPLEAN++ FA +E ++ L EE + + E Sbjct: 121 IQTIHSFCSTVLRRFPLEANVSPQFAEMEERAAELLREELIEDM-------ASGEDATLI 173 Query: 193 YEILEISNDEDIETLISDIISNRTAL 218 + I+ D+ L +I+ R AL Sbjct: 174 MNLATITGAYDLTELSGEIVGQRIAL 199 >gi|163745129|ref|ZP_02152489.1| ATP-dependent DNA nuclease, putative [Oceanibulbus indolifex HEL-45] gi|161381947|gb|EDQ06356.1| ATP-dependent DNA nuclease, putative [Oceanibulbus indolifex HEL-45] Length = 1123 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 70/202 (34%), Positives = 106/202 (52%), Gaps = 8/202 (3%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 Q+ A+ P S W++ANAGSGKT +L RV RLLL + P +LCLT+TKAAA+E Sbjct: 6 DDATRAQIEAARPDASTWLTANAGSGKTRVLTDRVARLLLDDVEPQHILCLTYTKAAASE 65 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLKVQTI 136 M +R+ + + W+ L D+ L + + + + + + AR L +ETPGGLK+QTI Sbjct: 66 MQNRLFKRLGEWAMLKDDALRSALADLGVQGELTPEQLRNARTLFARAIETPGGLKIQTI 125 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC A++++FPLEA ++ F ++ + L E E +I Sbjct: 126 HSFCAALLRRFPLEAQVSPQFTEIEDRAADLLRAEIVDEM-------AEGEDAPLVADIA 178 Query: 197 EISNDEDIETLISDIISNRTAL 218 ED +L I+ R A Sbjct: 179 RHYTGEDFASLTRSIVGQRDAF 200 >gi|254294694|ref|YP_003060717.1| double-strand break repair helicase AddA [Hirschia baltica ATCC 49814] gi|254043225|gb|ACT60020.1| double-strand break repair helicase AddA [Hirschia baltica ATCC 49814] Length = 1198 Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats. Identities = 68/170 (40%), Positives = 103/170 (60%), Gaps = 3/170 (1%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q A+ PT SAWVSANAGSGKT +L+ RV RLLL P ++C+T+TKAAA+EM R+ Sbjct: 17 QFDAATPTHSAWVSANAGSGKTKVLIDRVARLLLNGVQPDAIMCVTYTKAAASEMQGRLF 76 Query: 84 EIITAWSHLSDEILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGLKVQTIHAFC 140 + + W D+ L+ E+ ++Q + + ++ KAR L LETPGGL+++TIHAFC Sbjct: 77 KRLGGWCVADDKALAKELAELQARDIREYTQEELGKARELFALALETPGGLRIETIHAFC 136 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 ++++FPLEAN+ F D+ + +L E A ++ + + Sbjct: 137 GRLLRRFPLEANVAPGFKELDDNDASRLWEIAMAKLAEEAAFEDPSKSDE 186 >gi|84514936|ref|ZP_01002299.1| ATP-dependent DNA helicase, UvrD/Rep family [Loktanella vestfoldensis SKA53] gi|84511095|gb|EAQ07549.1| ATP-dependent DNA helicase, UvrD/Rep family [Loktanella vestfoldensis SKA53] Length = 1113 Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 65/201 (32%), Positives = 114/201 (56%), Gaps = 8/201 (3%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 Q+ A++P S W++ANAGSGKT +L RV RLLL + P +LCLT+TKAAAAEM Sbjct: 6 ATQRQVDAANPQISTWLAANAGSGKTRVLTDRVARLLLEDVSPQNILCLTYTKAAAAEMQ 65 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQ-GKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +R+ + + AW+ + D+ L A++ + + + + AR L +ETPGGLK+QTIH+ Sbjct: 66 NRLFKRLGAWAMMQDDSLRADLRGLGVDRSIDADQLRAARTLFARAIETPGGLKIQTIHS 125 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC ++++FPLEA ++ F ++ ++ L + + + +++L Sbjct: 126 FCAGVLRRFPLEAGVSPQFREMEDRAAQLLRADVMDQLVQ-------GDASGVVHKMLHH 178 Query: 199 SNDEDIETLISDIISNRTALK 219 + + + L +++ ++ A Sbjct: 179 FSGDSLAKLTAEVARHKDAFP 199 >gi|170749778|ref|YP_001756038.1| double-strand break repair helicase AddA [Methylobacterium radiotolerans JCM 2831] gi|170656300|gb|ACB25355.1| double-strand break repair helicase AddA [Methylobacterium radiotolerans JCM 2831] Length = 1165 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 75/185 (40%), Positives = 114/185 (61%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T++ Q A+DP SAWVSANAG+GKT +L RV+RLLL A P +LCLT TKAAAA M+ Sbjct: 18 TRANQRRAADPRASAWVSANAGAGKTKVLTDRVVRLLLDEAPPGRILCLTFTKAAAANMA 77 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV ++ W L DE L+AE+ ++ G++ + AR L +ETPGGLK++T+HA Sbjct: 78 IRVFRLLGRWVTLDDETLAAELAELTGERAGPERLRLARRLFARAVETPGGLKIETLHAL 137 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 CE ++ FP EAN+ + F + DE ++++L + + LA + + + L A + + Sbjct: 138 CERLLHMFPFEANVPARFVVLDEAKARELFDIEMANVLADAVANGDTPLSAALARVTPEA 197 Query: 200 NDEDI 204 + + Sbjct: 198 TGDTL 202 >gi|119385518|ref|YP_916574.1| UvrD-like DNA helicase domain-containing protein [Paracoccus denitrificans PD1222] gi|119375285|gb|ABL70878.1| UvrD-like DNA helicase, C-terminal domain [Paracoccus denitrificans PD1222] Length = 1124 Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats. Identities = 75/208 (36%), Positives = 121/208 (58%), Gaps = 15/208 (7%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 ++ + Q+ A+DP RS W++ANAGSGKT +L RV RLLLA P +LCLT+TKAAA Sbjct: 1 MMDEATLAQVRAADPHRSTWLTANAGSGKTRVLTDRVARLLLAGTAPERILCLTYTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM +R+L + W+ L + L AE+ ++ + D+ AR L +ETPGGLKVQT Sbjct: 61 SEMQNRLLARLGRWAMLPEAELRAELARLG--EAGAPDLPAARRLFARAIETPGGLKVQT 118 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC ++++FP+EA + F D+ + + E + + D+ EL+ + Sbjct: 119 IHSFCAGVLRRFPIEAGVPHGFTELDDRSAALIRAE----IIEEMARDHAPELQD----L 170 Query: 196 LEISNDEDIETLIS-----DIISNRTAL 218 L + + E ++ ++ + ++R AL Sbjct: 171 LALHSGERLDAFLAGLRGFEAPADRDAL 198 >gi|326389380|ref|ZP_08210948.1| recombination helicase AddA [Thermoanaerobacter ethanolicus JW 200] gi|325994743|gb|EGD53167.1| recombination helicase AddA [Thermoanaerobacter ethanolicus JW 200] Length = 1230 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 33/226 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T +QL + + V+A AGSGKT +LV+R+++L+ + +P LL +T T AAA Sbjct: 5 WTYEQQLAINTRGSNLLVAAGAGSGKTAVLVERIIKLVTDDKNPVDIDKLLVVTFTNAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ E + + + P +S LL + + T Sbjct: 65 SEMRERIAEALIS---------------KLDQNPEDRRLSNQLTLLNKAI-------ITT 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ ++ +F I D+ ++ L EA + + + E F + Sbjct: 103 IHSFCLEVVRNNFFLIDLDPNFRIGDDTETLLLKLEAVEELFEELYQKEDNE---DFLTL 159 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +E + + DI+ LKL F S W K + L S Sbjct: 160 VESYGGTKDDKPLVDIL-----LKLYDFVKSLPWPEKWLRDVLLSF 200 >gi|170738831|ref|YP_001767486.1| double-strand break repair helicase AddA [Methylobacterium sp. 4-46] gi|168193105|gb|ACA15052.1| double-strand break repair helicase AddA [Methylobacterium sp. 4-46] Length = 1157 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 82/219 (37%), Positives = 129/219 (58%), Gaps = 3/219 (1%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T++ Q A+DP SAWVSANAG+GKT +L RV+RLLL A P+ +LCLT TKAAAA M+ Sbjct: 12 TQTAQRRAADPRASAWVSANAGAGKTKVLTDRVVRLLLHGAPPAKILCLTFTKAAAANMA 71 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV E + W L +E L AE+T ++G++P+ + + +AR L +ETPGGLK++T+HA Sbjct: 72 IRVFERLGRWVTLPEEALRAELTALEGERPDPATLRRARRLFARAVETPGGLKIETLHAL 131 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 CE ++ P EAN+ + F + DE Q+++ ++ + LA + +L +A + + Sbjct: 132 CERLLHLVPFEANVPARFVVLDEAQTREAVDRTIDNVLADAVDGTRPDLAQALARVAPEA 191 Query: 200 NDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 E + I + + R L R + + ++L Sbjct: 192 AGEALRRAIGEAVRARAVL---LHPQGLPARLERLREAL 227 >gi|299133347|ref|ZP_07026542.1| double-strand break repair helicase AddA [Afipia sp. 1NLS2] gi|298593484|gb|EFI53684.1| double-strand break repair helicase AddA [Afipia sp. 1NLS2] Length = 1163 Score = 193 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 82/198 (41%), Positives = 116/198 (58%), Gaps = 1/198 (0%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 + QL AS P SA+V+ANAGSGKT++LV RV+RLLL + P +LC+T TKAAAA M+ Sbjct: 13 REAQLRASHPQSSAFVAANAGSGKTYVLVNRVIRLLLDDVAPEKILCITFTKAAAANMAQ 72 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 RV + + W LSD+ L A I G + + ++AR L LETPGGLKVQTIHA C Sbjct: 73 RVFDTLGKWVALSDDELDAAIRN-SGAQVTRDVRARARKLFACALETPGGLKVQTIHALC 131 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 ++QQFP EAN+ +HFA+ DE ++E A + L + L +A + + Sbjct: 132 TRLLQQFPFEANVPAHFAVLDERDQTDMMERANLAVLLEAARTPDGALGRALAFAMAQAA 191 Query: 201 DEDIETLISDIISNRTAL 218 D + ++ + +R Sbjct: 192 DITFKEVVHEACLSREHF 209 >gi|197103666|ref|YP_002129043.1| helicase, UvrD/Rep family [Phenylobacterium zucineum HLK1] gi|196477086|gb|ACG76614.1| helicase, UvrD/Rep family [Phenylobacterium zucineum HLK1] Length = 1147 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 83/202 (41%), Positives = 123/202 (60%), Gaps = 4/202 (1%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q +A+DP RSA+V+ANAGSGKT L+ RV RLLLA A P T+LC+T+TKAAAAEM R+ Sbjct: 11 QRIAADPGRSAFVTANAGSGKTKTLIDRVARLLLARAEPETILCVTYTKAAAAEMQRRLF 70 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFC 140 + + WS + D L+ E+ ++G+ D +S+AR L LETPGGLK+QTIHAFC Sbjct: 71 KRLGDWSVMPDGPLTEELAHLEGRPAAAYDDLRLSEARALFARALETPGGLKIQTIHAFC 130 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 E ++++FPLEA I+ F + D+ + I A ++ +A L + +A+ + + Sbjct: 131 EKLLRRFPLEAGISPGFRVMDDAAAAA-IAAAARAGVARHALKGEGRVAEAYARLSVALD 189 Query: 201 DEDIETLISDIISNRTALKLIF 222 + + D + R L+ F Sbjct: 190 FGSFQQMFLDFEARRGRLRDFF 211 >gi|99082686|ref|YP_614840.1| UvrD/REP helicase [Ruegeria sp. TM1040] gi|99038966|gb|ABF65578.1| ATP-dependent nuclease subunit A [Ruegeria sp. TM1040] Length = 1121 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 70/202 (34%), Positives = 110/202 (54%), Gaps = 8/202 (3%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + Q A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+E Sbjct: 4 NAASEAQFRAARPDASTWLAANAGSGKTKVLTDRVARLLLRGVEPQHILCLTYTKAAASE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTI 136 M +R+ + + W+ L D L A + + + D +++AR L +ETPGGLK+QTI Sbjct: 64 MQNRLFQRLGEWAMLPDAKLRAALVDLGAEDAAIGDGLAQARTLFARAIETPGGLKIQTI 123 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC +++++FPLEA ++ F ++ + L E + + ++ A + I Sbjct: 124 HSFCSSLLRRFPLEAGVSPQFTEMEDRAAAMLRAEIAEDM---AQGPDAHVVEAASFHI- 179 Query: 197 EISNDEDIETLISDIISNRTAL 218 D ETL ++I + Sbjct: 180 ---GGLDFETLTAEICRRQAGF 198 >gi|225375922|ref|ZP_03753143.1| hypothetical protein ROSEINA2194_01558 [Roseburia inulinivorans DSM 16841] gi|225212243|gb|EEG94597.1| hypothetical protein ROSEINA2194_01558 [Roseburia inulinivorans DSM 16841] Length = 1182 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 34/226 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 +S T +Q + R+ VSA AGSGKT +LV+R+++++ HP LL +T T Sbjct: 2 GVSWTTEQQQVIDLRNRNILVSAAAGSGKTAVLVERIVKIITDKNHPVDIDHLLIVTFTN 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAAEM R+ I K ++P + + L+ + Sbjct: 62 AAAAEMRERI---------------GNAIEKALDEQPGNEHLLRQLTLIHNA-------Q 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TI +FC +++ E ++ +F I DE + K L E L ++ N EE +AF Sbjct: 100 ITTIDSFCLYVVRNHFHEIDLEPNFRIGDEGELKLLRE----DVLGRVLEQNYEEPSEAF 155 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 + +E + ++++I L+L F SY W K ++ + Sbjct: 156 SDFVEGYASGRTDAALNEMI-----LQLYEFSRSYPWPEKWLDSFV 196 >gi|163797153|ref|ZP_02191108.1| ATP-dependent exoDNAse beta subunit [alpha proteobacterium BAL199] gi|159177669|gb|EDP62222.1| ATP-dependent exoDNAse beta subunit [alpha proteobacterium BAL199] Length = 1152 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 82/202 (40%), Positives = 125/202 (61%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 ++ Q LA+DPT S WV+A+AGSGKT +L R+L LLL A P LLCLT+TKAAAA Sbjct: 7 LAAANERQRLAADPTASVWVAASAGSGKTKVLTDRLLNLLLDGASPERLLCLTYTKAAAA 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM+ R+ + AW+ + + L ++ ++ G P ++ ++KAR L +L+ PGGLK+QTI Sbjct: 67 EMATRLQSRLAAWTVVDEPSLVDDLARLSGATPTQARLAKARRLFAEVLDAPGGLKIQTI 126 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAF ++++ +FPLEA + +F +AD+ S L+ EA+ + LA + +L A + Sbjct: 127 HAFAQSLLGRFPLEAGVPPNFRLADDRASAALLAEAEAAMLARARSATDTDLATALSIVT 186 Query: 197 EISNDEDIETLISDIISNRTAL 218 E +N E L+ + RT L Sbjct: 187 ERANQEQFRELMRAALGARTRL 208 >gi|154247228|ref|YP_001418186.1| double-strand break repair helicase AddA [Xanthobacter autotrophicus Py2] gi|154161313|gb|ABS68529.1| Double-strand break repair helicase AddA [Xanthobacter autotrophicus Py2] Length = 1167 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 85/207 (41%), Positives = 120/207 (57%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 D S+ Q AS P SAWVSANAGSGKTH+L +RV+RLLLA P +LCLT+TKAA Sbjct: 16 DPKSEATRRQSEASHPAFSAWVSANAGSGKTHVLARRVIRLLLAGTPPGRILCLTYTKAA 75 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AA M++RVL I+ W L D L I G P+ + ++AR L LETPGGLK+Q Sbjct: 76 AANMANRVLAILGRWVRLPDAELDDAIRDTVGSPPDAALRARARRLFAAALETPGGLKIQ 135 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TIHAFC A++ +FP EA++ + F DE ++L+ + + + N L +A Sbjct: 136 TIHAFCGALLHRFPFEADVAAGFGELDEVGRQELMARIRADLVVAASRTPNALLGEALAR 195 Query: 195 ILEISNDEDIETLISDIISNRTALKLI 221 + E +D + L+ ++ R + + Sbjct: 196 LTEDMSDSGLSGLLEAAVALRARILPL 222 >gi|221236588|ref|YP_002519025.1| ATP-dependent nuclease subunit A [Caulobacter crescentus NA1000] gi|220965761|gb|ACL97117.1| ATP-dependent nuclease subunit A [Caulobacter crescentus NA1000] Length = 1153 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 85/218 (38%), Positives = 126/218 (57%), Gaps = 11/218 (5%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q +A+DPT SA+V+ANAGSGKT L+ RV RLLLA P +LC+T+TKAAAAEM R+ Sbjct: 5 QRIAADPTISAFVTANAGSGKTKTLIDRVARLLLAGVEPQAILCVTYTKAAAAEMQRRLF 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFC 140 + + WS SD L AE+ K+ G+ + D +S AR L LETPGGLK+QTIHAFC Sbjct: 65 DRLGKWSVTSDADLRAELVKLVGEADARYDAKSLSDARALFAKALETPGGLKIQTIHAFC 124 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 E ++++FPLEA ++ F + D+ Q+ I A + +A+ + +++ +A+ + Sbjct: 125 EKLLRRFPLEAGVSPGFTVMDD-QAGAAIARAARRAVAAWVDSHDDAFSEAYARFSVALD 183 Query: 201 DEDIETLISDIISNRTALKLI-------FFFFSYLWRR 231 + E + + + R + S WRR Sbjct: 184 FQSFEAMFAGFEARRGQIMTYVQRCGGLAGAVSDAWRR 221 >gi|167038394|ref|YP_001665972.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116798|ref|YP_004186957.1| recombination helicase AddA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|251764573|sp|B0KDB7|ADDA_THEP3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|166857228|gb|ABY95636.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929889|gb|ADV80574.1| recombination helicase AddA [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 1233 Score = 192 bits (487), Expect = 5e-47, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 31/223 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T+ ++ + + V+A AGSGKT +LV+R++ L+ +P LL +T T AAA Sbjct: 5 WTEEQKQAITTRGSNLLVAAAAGSGKTAVLVERIINLITDEENPVDIDRLLVVTFTNAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ E + A I + P ++ LL + T Sbjct: 65 SEMRERIAEALIA---------------ILDQNPEDKRLANQLTLL-------NKATITT 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ ++ +F I D+ ++ L EA + + +++ K+ F + Sbjct: 103 IHSFCLEVVRNNFFLLDLDPNFRIGDDTETLLLQLEASEELFEEMYAKEDKD-KEGFLTL 161 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +E + + DI+ L+L F S W K ++ + Sbjct: 162 VESYGGTKDDQDLQDIL-----LRLYGFVRSLPWPEKWLKDVI 199 >gi|167038872|ref|YP_001661857.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter sp. X514] gi|300913540|ref|ZP_07130857.1| recombination helicase AddA [Thermoanaerobacter sp. X561] gi|307723445|ref|YP_003903196.1| recombination helicase AddA [Thermoanaerobacter sp. X513] gi|251764574|sp|B0K213|ADDA_THEPX RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|166853112|gb|ABY91521.1| UvrD-like DNA helicase, C terminal [Thermoanaerobacter sp. X514] gi|300890225|gb|EFK85370.1| recombination helicase AddA [Thermoanaerobacter sp. X561] gi|307580506|gb|ADN53905.1| recombination helicase AddA [Thermoanaerobacter sp. X513] Length = 1233 Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 31/223 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T+ ++ + + V+A AGSGKT +LV+R++ L+ +P LL +T T AAA Sbjct: 5 WTEEQKQAITTRGSNLLVAAAAGSGKTAVLVERIINLITDEENPVDIDRLLVVTFTNAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ E + A I + P ++ LL + T Sbjct: 65 SEMRERIAEALIA---------------ILDQNPEDKRLANQLTLL-------NKATITT 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ ++ +F I D+ ++ L EA + + +++ K+ F + Sbjct: 103 IHSFCLEVVRNNFFLLDLDPNFRIGDDTETLLLQLEASEELFEEMYAKEDKD-KEGFLTL 161 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +E + + DI+ L+L F S W K ++ + Sbjct: 162 VESYGGTKDDQDLQDIL-----LRLYGFVRSLPWPEKWLKDVI 199 >gi|259418122|ref|ZP_05742041.1| double-strand break repair helicase AddA [Silicibacter sp. TrichCH4B] gi|259347028|gb|EEW58842.1| double-strand break repair helicase AddA [Silicibacter sp. TrichCH4B] Length = 1121 Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats. Identities = 69/202 (34%), Positives = 112/202 (55%), Gaps = 8/202 (3%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + Q A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+E Sbjct: 4 NAASEAQFRAARPDASTWLAANAGSGKTKVLTDRVARLLLRGVEPQHILCLTYTKAAASE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD-MSKARHLLITILETPGGLKVQTI 136 M +R+ + + W+ L D L A + + + + D +++AR L +ETPGGLK+QTI Sbjct: 64 MQNRLFQRLGEWAMLPDAKLRAALVDLGAEDASVGDGLAQARTLFARAIETPGGLKIQTI 123 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC +++++FPLEA ++ F+ ++ + L E + + ++ A + I Sbjct: 124 HSFCSSLLRRFPLEAGVSPQFSEMEDRAAAMLRAEITEDM---AQGSDARVVEAASFHI- 179 Query: 197 EISNDEDIETLISDIISNRTAL 218 D E+L ++I + Sbjct: 180 ---GGLDFESLTAEICRRQAGF 198 >gi|125974531|ref|YP_001038441.1| DNA helicase/exodeoxyribonuclease V, subunit A [Clostridium thermocellum ATCC 27405] gi|251764521|sp|A3DH19|ADDA_CLOTH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|125714756|gb|ABN53248.1| DNA helicase/exodeoxyribonuclease V, subunit A [Clostridium thermocellum ATCC 27405] Length = 1251 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 34/226 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + + +S VSA AG+GKT +LV+R++R + +P LL +T T AAA Sbjct: 7 WTDEQWEAITGNEKSLLVSAAAGAGKTAVLVERIIRKITDEENPVDIDRLLVVTFTNAAA 66 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + I+ + + P +++ + LL G + T Sbjct: 67 TEMRERIAQAIS---------------EKLEENPGSANIQRQLTLL-------GKACITT 104 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ + NI F IADE +S+ + EA + NE+ F+E+ Sbjct: 105 IHSFCLEVIRSNFQQINIDPGFRIADETESRLMKLEALDEVFEEQYENENED----FFEL 160 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 LE + + D++ L L F S W + +EK S+ Sbjct: 161 LECYGGNRDDRALQDMV-----LNLYDFIQSSPWPEEWLEKMTESM 201 >gi|295687598|ref|YP_003591291.1| double-strand break repair helicase AddA [Caulobacter segnis ATCC 21756] gi|295429501|gb|ADG08673.1| double-strand break repair helicase AddA [Caulobacter segnis ATCC 21756] Length = 1153 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 81/198 (40%), Positives = 123/198 (62%), Gaps = 4/198 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q +A+DP SA+V+ANAGSGKT L+ RV RLLLA P +LC+T+TKAAAAEM R+ Sbjct: 5 QRIAADPAISAFVTANAGSGKTKTLIDRVARLLLAKVPPEAILCVTYTKAAAAEMQRRLF 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFC 140 E + WS SD L AE+ K+ G+ + D +S+AR L LETPGGLK+QTIHAFC Sbjct: 65 ERLGKWSVTSDADLRAELAKLVGESDDIYDARRLSEARALFAQALETPGGLKIQTIHAFC 124 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 E ++++FPLEA ++ F + D+ Q+ I A + ++A+ + +++ +A+ + Sbjct: 125 EKLLRRFPLEAGVSPGFTVMDD-QAGAAIARAARRSVAAWVDTHDDAFAEAYARFSVALD 183 Query: 201 DEDIETLISDIISNRTAL 218 + E + + + R + Sbjct: 184 FQSFEAMFAGFEARRGQI 201 >gi|110677844|ref|YP_680851.1| ATP-dependent DNA nuclease, putative [Roseobacter denitrificans OCh 114] gi|109453960|gb|ABG30165.1| ATP-dependent DNA nuclease, putative [Roseobacter denitrificans OCh 114] Length = 1125 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 107/202 (52%), Gaps = 8/202 (3%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 Q+ A+ P S W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA+EM Sbjct: 6 PATQAQVDAARPDASTWLAANAGSGKTRVLTDRVARLLLDKVAPEHILCLTYTKAAASEM 65 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQTIH 137 +R+ + + W+ L D+ L+ + + + + + KAR L +ETPGGLK+QTIH Sbjct: 66 QNRLFKRLGEWAMLQDDALAEALRDLGVETAVDAEKLRKARTLFARAIETPGGLKIQTIH 125 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC +++++FPLEA ++ F +E + L E + ++ + Sbjct: 126 SFCASLLRRFPLEARVSPQFTEIEERAADLLRAEIIDTM-------AEGPDAAVIADLAQ 178 Query: 198 ISNDEDIETLISDIISNRTALK 219 E+ L ++ ++ + Sbjct: 179 HYTGENFVKLAKAVVQHKDGFR 200 >gi|256005816|ref|ZP_05430767.1| recombination helicase AddA [Clostridium thermocellum DSM 2360] gi|255990217|gb|EEU00348.1| recombination helicase AddA [Clostridium thermocellum DSM 2360] gi|316941647|gb|ADU75681.1| recombination helicase AddA [Clostridium thermocellum DSM 1313] Length = 1251 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 34/226 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + + +S VSA AG+GKT +LV+R++R + +P LL +T T AAA Sbjct: 7 WTDEQWEAITGNEKSLLVSAAAGAGKTAVLVERIIRKITDEENPVDIDRLLVVTFTNAAA 66 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + I+ + + P +++ + LL G + T Sbjct: 67 TEMRERIAQAIS---------------EKLEENPGSANIQRQLTLL-------GKACITT 104 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ + NI F IADE +S+ + EA + NE+ F+E+ Sbjct: 105 IHSFCLEVIRSNFQQINIDPGFRIADETESRLMKLEALDEVFEEQYENENED----FFEL 160 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 LE + + D++ L L F S W + +EK S+ Sbjct: 161 LECYGGNRDDRALQDMV-----LNLYDFIQSSPWPEEWLEKMTESM 201 >gi|281419055|ref|ZP_06250072.1| recombination helicase AddA [Clostridium thermocellum JW20] gi|281407204|gb|EFB37465.1| recombination helicase AddA [Clostridium thermocellum JW20] Length = 1251 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 34/226 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + + +S VSA AG+GKT +LV+R++R + +P LL +T T AAA Sbjct: 7 WTDEQWEAITGNEKSLLVSAAAGAGKTAVLVERIIRKITDEENPVDIDRLLVVTFTNAAA 66 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + I+ + + P +++ + LL G + T Sbjct: 67 TEMRERIAQAIS---------------EKLEENPGSANIQRQLTLL-------GKACITT 104 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ + NI F IADE +S+ + EA + NE+ F+E+ Sbjct: 105 IHSFCLEVIRSNFQQINIDPGFRIADETESRLMKLEALDEVFEEQYENENED----FFEL 160 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 LE + + D++ L L F S W + +EK S+ Sbjct: 161 LECYGGNRDDRALQDMV-----LNLYDFIQSSPWPEEWLEKMTESM 201 >gi|16127768|ref|NP_422332.1| UvrD/Rep family helicase [Caulobacter crescentus CB15] gi|13425272|gb|AAK25500.1| helicase, UvrD/Rep family [Caulobacter crescentus CB15] Length = 1203 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 84/218 (38%), Positives = 126/218 (57%), Gaps = 11/218 (5%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q +A+DPT SA+V+ANAG+GKT L+ RV RLLLA P +LC+T+TKAAAAEM R+ Sbjct: 55 QRIAADPTISAFVTANAGAGKTKTLIDRVARLLLAGVEPQAILCVTYTKAAAAEMQRRLF 114 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFC 140 + + WS SD L AE+ K+ G+ + D +S AR L LETPGGLK+QTIHAFC Sbjct: 115 DRLGKWSVTSDADLRAELVKLVGEADARYDAKSLSDARALFAKALETPGGLKIQTIHAFC 174 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 E ++++FPLEA ++ F + D+ Q+ I A + +A+ + +++ +A+ + Sbjct: 175 EKLLRRFPLEAGVSPGFTVMDD-QAGAAIARAARRAVAAWVDSHDDAFSEAYARFSVALD 233 Query: 201 DEDIETLISDIISNRTALKLI-------FFFFSYLWRR 231 + E + + + R + S WRR Sbjct: 234 FQSFEAMFAGFEARRGQIMTYVQRCGGLAGAVSDAWRR 271 >gi|84501212|ref|ZP_00999417.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola batsensis HTCC2597] gi|84390503|gb|EAQ02991.1| ATP-dependent DNA helicase, UvrD/Rep family protein [Oceanicola batsensis HTCC2597] Length = 1117 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 71/207 (34%), Positives = 114/207 (55%), Gaps = 11/207 (5%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 Q+ A+ P RS W++ANAGSGKT +L RV RLLL P +LCLT+TKAAA EM Sbjct: 6 ASQRQVDAARPDRSTWLAANAGSGKTRVLTDRVARLLLDGVLPQHILCLTYTKAAATEMQ 65 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGK-KPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +R+ + + W+ L D+ L E+ + + + ++ AR L +ETPGGLK+QTIH+ Sbjct: 66 NRLFKRLGHWAMLPDDQLRTELETLGIEDRVTAGRLNLARTLFARAIETPGGLKIQTIHS 125 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC A++++FPLEA ++ F +E + L E + + + + + Sbjct: 126 FCAALLRRFPLEAGVSPQFTEMEERDATLLRAE----VIDRLARRPDAGVLERVALFYSG 181 Query: 199 SNDEDIETLI---SDIISN---RTALK 219 ++ E + + +D++S R AL+ Sbjct: 182 ASMEGLAATVAGHADLLSRQPGRDALE 208 >gi|189182928|ref|YP_001936713.1| putative ATP-dependent helicase/nuclease [Orientia tsutsugamushi str. Ikeda] gi|189179699|dbj|BAG39479.1| putative ATP-dependent helicase/nuclease [Orientia tsutsugamushi str. Ikeda] Length = 1155 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 74/202 (36%), Positives = 119/202 (58%), Gaps = 6/202 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 QL+ASDP S WVSA+AG+GKT +L RVLRLLL+ A +LCLT T AAA EM RV+ Sbjct: 5 QLIASDPYVSCWVSASAGTGKTKVLTDRVLRLLLSGAKLQKILCLTFTNAAANEMLDRVI 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + +W+ + + +L A + + G P S + +AR L L+ + +QTIH+FC+ + Sbjct: 65 AQLKSWACMDNAMLVASMHNMLGINPTDSQVLRARSLCNEYLQAKENIAIQTIHSFCQNL 124 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 +Q+F +EA I ++F I DE ++K++I + ++ ++ E+ + I ++ Sbjct: 125 LQKFSVEAGINANFTILDELKTKEIIY-----FIQQNLIHSSSEIHGSLEFIANYKHETS 179 Query: 204 IETLISDIIS-NRTALKLIFFF 224 I LI +II+ R L L+ + Sbjct: 180 ITQLIDNIIADQRKFLSLLEHY 201 >gi|209883635|ref|YP_002287492.1| double-strand break repair helicase AddA [Oligotropha carboxidovorans OM5] gi|209871831|gb|ACI91627.1| double-strand break repair helicase AddA [Oligotropha carboxidovorans OM5] Length = 1161 Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats. Identities = 83/198 (41%), Positives = 116/198 (58%), Gaps = 1/198 (0%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 + Q AS+P SA+V+ANAGSGKTH+LV RV+RLLLA+ P +LC+T TKAAAA M+ Sbjct: 13 RDAQARASNPEASAFVAANAGSGKTHVLVTRVIRLLLADVAPEKILCITFTKAAAANMAQ 72 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 RV E + W L D+ L A I + G + +AR L LETPGGLKVQTIHA C Sbjct: 73 RVFETLGRWVALDDDALDAAIRHV-GAPATREMRVRARKLFACALETPGGLKVQTIHALC 131 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 ++QQFP EAN+ +HFA+ DE +++E A + L + L +A + + Sbjct: 132 TRLLQQFPFEANVPAHFAVLDERDQTEMMERANLAVLLEAARAPDSALGRALAFAMTQAA 191 Query: 201 DEDIETLISDIISNRTAL 218 D + ++ + +R Sbjct: 192 DVTFKEVVHEACLSREHF 209 >gi|325261823|ref|ZP_08128561.1| ATP-dependent nuclease subunit A [Clostridium sp. D5] gi|324033277|gb|EGB94554.1| ATP-dependent nuclease subunit A [Clostridium sp. D5] Length = 1263 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 34/223 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + T +Q + R+ VSA AGSGKT +LV+R++++L P LL +T T+A Sbjct: 3 VKWTSEQQKVIDLRERNILVSAAAGSGKTAVLVERIIQMLTDPKKPADVDRLLIVTFTEA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ E I K ++P + + L+ + ++ Sbjct: 63 AAAEMKERIRE---------------AIEKSLEERPEDVHLQRQATLIHSA-------QI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+FC +++++ +I F IA+E + K L ++ L + ++ + + Sbjct: 101 TTIHSFCLSVIREHFHVLDIDPGFRIAEEGELKLLKQDVLDELLEACYVNADTPFLEFVE 160 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + ND+ IE +I LKL + SY +++ Sbjct: 161 KFGTGRNDKKIEEII---------LKLYEYSRSYPQPDVWLDE 194 >gi|291535312|emb|CBL08424.1| recombination helicase AddA, Firmicutes type [Roseburia intestinalis M50/1] Length = 1237 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 34/230 (14%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 ++ T ++ + R+ VSA AGSGKT +LV+R+++++ HP LL +T T Sbjct: 2 GMTWTDDQRKVIELRDRNILVSAAAGSGKTAVLVERIIKIITDKEHPVDIDRLLIVTFTN 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAAEM R+ + + P+ + + LL + Sbjct: 62 AAAAEMRERIGNAL---------------ENALKENPDDEHLQRQLSLLHNA-------Q 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TI +FC +++ E ++ +F I DE + K L E LA ++L N EE F Sbjct: 100 ITTIDSFCLYVIRNHFHEIDLEPNFRIGDEGELKLLKE----DVLAKVLLKNYEESAPEF 155 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 ++ + +S +I L+L F SY W +K + + S Sbjct: 156 LAFVDGYASGRNDAALSGMI-----LQLYEFSRSYPWPKKWLPAAAESYG 200 >gi|148284261|ref|YP_001248351.1| ATP-dependent DNA helicase UvrD [Orientia tsutsugamushi str. Boryong] gi|146739700|emb|CAM79510.1| ATP-dependent helicase, UvrD/rep/AddA family [Orientia tsutsugamushi str. Boryong] Length = 1154 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 74/202 (36%), Positives = 119/202 (58%), Gaps = 6/202 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 QL+ASDP S WVSA+AG+GKT +L RVLRLLL+ A +LCLT T AAA EM RV+ Sbjct: 5 QLIASDPYVSCWVSASAGTGKTKVLTDRVLRLLLSGAKLQKILCLTFTNAAANEMLDRVI 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + +W+ + + +L A + + G P S + +AR L L+ + +QTIH+FC+ + Sbjct: 65 AQLKSWACMDNAMLVASMHNMLGINPTDSQVLRARSLCNEYLQAKENIAIQTIHSFCQNL 124 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 +Q+F +EA I ++F I DE ++K++I + ++ ++ E+ + I ++ Sbjct: 125 LQKFSVEAGINANFTILDELKTKEIIY-----FIQQNLIHSSSEIHVSLEFIANYKHENS 179 Query: 204 IETLISDIIS-NRTALKLIFFF 224 I LI +II+ R L L+ + Sbjct: 180 ITQLIDNIIADQRKFLSLLEHY 201 >gi|58039096|ref|YP_191060.1| ATP-dependent nuclease subunit A [Gluconobacter oxydans 621H] gi|58001510|gb|AAW60404.1| ATP-dependent nuclease subunit A [Gluconobacter oxydans 621H] Length = 1191 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 112/179 (62%), Gaps = 15/179 (8%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL--------------LLANA 60 ++I+ Q ASDP S +VSA+AGSGKT +L+ R+LRL L A Sbjct: 15 EVIAAADRTQRQASDPRASVFVSASAGSGKTKLLIDRLLRLMLPLYVQTDDGDTILADGA 74 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 HPS +LCLT+TKAAAAEM++R+ + + +W L D L AE+ + +++ +AR L Sbjct: 75 HPSRILCLTYTKAAAAEMANRLQQKLGSWVSLPDAKLGAELESLDVPNTDET-RRRARAL 133 Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 + +L+ PGGL+++TIHAFC++++++FPLEA++ HF + ++ + + EA + LA Sbjct: 134 FLCVLDLPGGLRIETIHAFCQSLLRRFPLEASVDPHFTLMEDTDTTLALREAMEDGLAR 192 >gi|296117285|ref|ZP_06835876.1| double-strand break repair helicase AddA [Gluconacetobacter hansenii ATCC 23769] gi|295976178|gb|EFG82965.1| double-strand break repair helicase AddA [Gluconacetobacter hansenii ATCC 23769] Length = 1208 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 111/221 (50%), Gaps = 23/221 (10%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL--------------LLANA 60 D I+ Q ASDP S +VSA+AGSGKT +L+ R+LRL L+ + Sbjct: 32 DAIALANESQAQASDPQASVFVSASAGSGKTKLLIDRLLRLMLPRPTHDAHGQAVLVPGS 91 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 PS +LCLT TKAAAAEM+ R+ + W L D L E+ + P AR L Sbjct: 92 DPSRILCLTFTKAAAAEMAIRLQNRLGRWVTLPDAALDTELRDLF-VPPEPRTRQVAREL 150 Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 +L+ PGG+++ TIHAFC++++++FP+EA I+ HF + +E ++ + A + + Sbjct: 151 FARVLDLPGGMRIGTIHAFCQSLLRRFPVEAAISPHFTLVEETDARLALRGAVEDVVGR- 209 Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLI 221 A + D TL++ + A + + Sbjct: 210 -------GGPAIAALAGQVGIGDFTTLVTRLQGQLRAFRAV 243 >gi|294084828|ref|YP_003551588.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664403|gb|ADE39504.1| UvrD/REP helicase [Candidatus Puniceispirillum marinum IMCC1322] Length = 1162 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 123/207 (59%), Gaps = 4/207 (1%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 DLI + EQ ASDP S +VSANAG+GKT +L RVLRLLL+ A +LC+T+T+AA Sbjct: 3 DLIQRASIEQARASDPMASVFVSANAGTGKTKLLTDRVLRLLLSGAEADGILCVTYTRAA 62 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM +R+ + W+ +S L+ ++ + P++ ++ AR L IL+ G +V+ Sbjct: 63 AAEMRNRIYARLARWAVISTADLTKDLQAMGIVAPSQGNIRLARMLFAKILDNDNGPRVE 122 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+H+FC++I+++FP+EA I + +AD+ + +L AK + + S+ + ++ A Sbjct: 123 TVHSFCQSILRRFPIEAGIAPNAKLADDAEQDRLKSIAKVAVMNSL----DPAIQIAVAT 178 Query: 195 ILEISNDEDIETLISDIISNRTALKLI 221 I S++ ++++ + AL I Sbjct: 179 IANQSSEGQATEILTEFLRRVPALDDI 205 >gi|291538110|emb|CBL11221.1| recombination helicase AddA, Firmicutes type [Roseburia intestinalis XB6B4] Length = 1237 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 34/230 (14%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 ++ T ++ + R+ VSA AGSGKT +LV+R+++++ HP LL +T T Sbjct: 2 GMTWTDDQRKVIELRDRNILVSAAAGSGKTAVLVERIIKIITDKDHPVDIDRLLIVTFTN 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAAEM R+ + ++P+ + + LL + Sbjct: 62 AAAAEMRERIGNAL---------------ENALKEQPDDEHLQRQLSLLHNA-------Q 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TI +FC +++ E ++ +F I DE + K L E LA ++L N EE F Sbjct: 100 ITTIDSFCLYVIRNHFHEIDLEPNFRIGDEGELKLLKE----DVLAKVLLKNYEESAPEF 155 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 ++ + +S +I L+L F SY W +K + + S Sbjct: 156 LAFVDGYASGRNDAALSGMI-----LQLYEFSRSYPWPKKWLPAAAESYG 200 >gi|157803400|ref|YP_001491949.1| ATP-dependent helicase [Rickettsia canadensis str. McKiel] gi|157784663|gb|ABV73164.1| ATP-dependent helicase [Rickettsia canadensis str. McKiel] Length = 872 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 6/205 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q ASDP S WVSA+AG+GKT +L R LRLL+ P+ +LCLT T AAA EM R+ Sbjct: 5 QQEASDPKYSVWVSASAGTGKTKVLTDRFLRLLIKGVEPANILCLTFTNAAAVEMQARIN 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + S + E L E+ + G KP + ++ A+ L IL + L + TIHAFC+ I Sbjct: 65 SKLKYLSLCNAEKLEEELFLMLGNKPLQPELENAKTLYDKILNSNEPLNIYTIHAFCQKI 124 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ PLEA IT F I +E + + + + + D + +L K +L ++ Sbjct: 125 LKTCPLEAGITPEFKILEETKLQDIFLNIRNEI---YLSDEHNDLMKI---LLNRFHEIT 178 Query: 204 IETLISDIISNRTALKLIFFFFSYL 228 ++ + S+II + K +F + Sbjct: 179 LQDIFSEIIEQKIKFKKLFTHKTIP 203 >gi|240144976|ref|ZP_04743577.1| ATP-dependent nuclease subunit A [Roseburia intestinalis L1-82] gi|257202969|gb|EEV01254.1| ATP-dependent nuclease subunit A [Roseburia intestinalis L1-82] Length = 1237 Score = 188 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 34/230 (14%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 ++ T ++ + R+ VSA AGSGKT +LV+R+++++ HP LL +T T Sbjct: 2 GMTWTDDQRKVIELRDRNILVSAAAGSGKTAVLVERIIKIITDKEHPVDIDRLLIVTFTN 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAAEM R+ + ++P+ + + LL + Sbjct: 62 AAAAEMRERIGNAL---------------ENALKEQPDDEHLQRQLSLLHNA-------Q 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TI +FC +++ E ++ +F I DE + K L E LA ++L N EE F Sbjct: 100 ITTIDSFCLYVIRNHFHEIDLEPNFRIGDEGELKLLKE----DVLAKVLLKNYEESAPEF 155 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 ++ + +S +I L+L F SY W +K + + S Sbjct: 156 LAFVDGYASGRNDAALSGMI-----LQLYEFSRSYPWPKKWLLAAAESYG 200 >gi|148555593|ref|YP_001263175.1| double-strand break repair helicase AddA [Sphingomonas wittichii RW1] gi|148500783|gb|ABQ69037.1| Double-strand break repair helicase AddA [Sphingomonas wittichii RW1] Length = 1142 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 66/195 (33%), Positives = 98/195 (50%), Gaps = 1/195 (0%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + +Q ASDP W+SA+AG+GKTH+L RVLRLLL A P +LCLT TKA AA Sbjct: 8 LDPLQPQQRAASDPRELVWLSASAGTGKTHVLTARVLRLLLGGAAPEAILCLTFTKAGAA 67 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQT 135 EM+ R+ + W+ D++ + G+ + +AR L +LE P GGL++QT Sbjct: 68 EMAERIHRRLAHWAGQKDDLKLTQDLTRLGEDAGPEALKRARQLFARVLEAPGGGLRIQT 127 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IHAFC+ ++ FP EA +T F + + L L + L + + Sbjct: 128 IHAFCQTLLAGFPAEAGLTPGFRPIEGREEAALARRTLADLLDGAARGGDHGLIRDVQAL 187 Query: 196 LEISNDEDIETLISD 210 + E + D Sbjct: 188 SLRLGEGGAEAYLLD 202 >gi|153813842|ref|ZP_01966510.1| hypothetical protein RUMTOR_00048 [Ruminococcus torques ATCC 27756] gi|145848238|gb|EDK25156.1| hypothetical protein RUMTOR_00048 [Ruminococcus torques ATCC 27756] Length = 1197 Score = 188 bits (478), Expect = 5e-46, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 92/223 (41%), Gaps = 34/223 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 + TK +Q + R+ VSA AGSGKT +LV+R+++ + P LL +T T+ Sbjct: 2 GVKWTKQQQKVIDLRNRNILVSAAAGSGKTAVLVERIIQKITDEQSPVDVDRLLIVTFTE 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAAEM R+ E I K + P + + L+ + Sbjct: 62 AAAAEMKDRIRE---------------AIEKKLEENPGNVHLERQATLVHSAP------- 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TIH+FC +++++ ++ F I ++ + K L ++ L EE Sbjct: 100 ITTIHSFCLSVIREHFHVIDLDPGFRIGEDGELKLLKQDVLDELLEECYSKGEEEFLSFT 159 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 ND IE +I LKL + SY + ++ Sbjct: 160 ERFGTGKNDRKIEGII---------LKLYEYSGSYPRPEQWLD 193 >gi|331092164|ref|ZP_08340994.1| recombination helicase AddA [Lachnospiraceae bacterium 2_1_46FAA] gi|330401936|gb|EGG81510.1| recombination helicase AddA [Lachnospiraceae bacterium 2_1_46FAA] Length = 1197 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 100/226 (44%), Gaps = 34/226 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 ++ T ++ + S R+ VSA AGSGKT +LV+R++ +L + P LL +T T+ Sbjct: 2 GVNWTPEQEKVISLRNRNILVSAAAGSGKTAVLVERIITMLTKDEPPINVDELLIVTFTE 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA+EM R+L I K + P+ + K L+ + + Sbjct: 62 AAASEMKERILS---------------AIEKKLEENPDNVHLQKQSTLIHSAM------- 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TIH+FC ++++++ ++ F I +E + K L +E + L +++ Sbjct: 100 ITTIHSFCLSVIREYFHTIDLDPSFRIGEEGELKLLQKEVLQELLEEQYEKADKKFLSFV 159 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +D+ +E I L+L F SY K ++ + Sbjct: 160 ERFATGRDDKKLEEFI---------LQLYTFSGSYPNGEKWLDSCI 196 >gi|220921602|ref|YP_002496903.1| double-strand break repair helicase AddA [Methylobacterium nodulans ORS 2060] gi|219946208|gb|ACL56600.1| double-strand break repair helicase AddA [Methylobacterium nodulans ORS 2060] Length = 1157 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 81/199 (40%), Positives = 124/199 (62%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T++ Q A+DP SAWVSANAG+GKT +L RV+RLLL A PS +LCLT TKAAAA M+ Sbjct: 12 TRTAQRRAADPCASAWVSANAGAGKTKVLTDRVVRLLLHGAAPSKILCLTFTKAAAANMA 71 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV E + W L E L AE+T+++G++P+ + + +AR L +ETPGGLK++T+HA Sbjct: 72 IRVFERLGRWVTLDAEALRAELTELEGERPDAATLRRARRLFARAVETPGGLKIETLHAL 131 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 CE ++ P EAN+ + F + DE Q+++ ++ + LA + + +L A + + Sbjct: 132 CERLLHLVPFEANVPARFVVLDEAQTREAVDRTIDNVLADAVDGTHPDLAGALGLVAPEA 191 Query: 200 NDEDIETLISDIISNRTAL 218 E + I + + R+ L Sbjct: 192 AGETLRRAIGEAVRARSLL 210 >gi|89056557|ref|YP_512008.1| UvrD/REP helicase [Jannaschia sp. CCS1] gi|88866106|gb|ABD56983.1| UvrD/REP helicase [Jannaschia sp. CCS1] Length = 1120 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 87/160 (54%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + Q A+DP S W+ ANAGSGKT +L RV RLLL P +LCLT+TKAAA Sbjct: 1 MDDATRAQTRAADPATSTWLGANAGSGKTRVLTDRVARLLLDGVPPERILCLTYTKAAAM 60 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM +R+ + W+ D L + I + AR L +E PGGLK+QTI Sbjct: 61 EMQNRLFSRLGTWAMKDDAALRDTLGAIGVGGLTPELLDTARTLFARAIEAPGGLKIQTI 120 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+FC +++++FPLEA ++ F DE +L+ + Sbjct: 121 HSFCASVLRRFPLEARVSPAFTEIDERVQARLLADLLDDM 160 >gi|317501978|ref|ZP_07960162.1| hypothetical protein HMPREF1026_02106 [Lachnospiraceae bacterium 8_1_57FAA] gi|316896658|gb|EFV18745.1| hypothetical protein HMPREF1026_02106 [Lachnospiraceae bacterium 8_1_57FAA] Length = 1197 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 34/223 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 + T+ +Q + R+ VSA AGSGKT +LV+R+++ + P LL +T T+ Sbjct: 2 GVKWTEQQQKVIDLRNRNILVSAAAGSGKTAVLVERIIQKITDEQSPVDVDRLLIVTFTE 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAAEM R+ E I K + P + + L+ + Sbjct: 62 AAAAEMKDRIRE---------------AIEKKLEENPGNVHLERQATLVHSAP------- 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TIH+FC +++++ ++ F I ++ + K L ++ L EE Sbjct: 100 ITTIHSFCLSVIREHFHVIDLDPGFRIGEDGELKLLKQDVLDELLEECYSKGEEEFLSFT 159 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 ND IE +I LKL + SY + ++ Sbjct: 160 ERFGTGKNDRKIEGII---------LKLYEYSGSYPRPEQWLD 193 >gi|331088205|ref|ZP_08337124.1| recombination helicase AddA [Lachnospiraceae bacterium 3_1_46FAA] gi|330408449|gb|EGG87915.1| recombination helicase AddA [Lachnospiraceae bacterium 3_1_46FAA] Length = 1197 Score = 187 bits (476), Expect = 9e-46, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 34/223 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 + T+ +Q + R+ VSA AGSGKT +LV+R+++ + P LL +T T+ Sbjct: 2 GVKWTEQQQKVIDLRNRNILVSAAAGSGKTAVLVERIIQKITDEQSPVDVDRLLIVTFTE 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAAEM R+ E I K + P + + L+ + Sbjct: 62 AAAAEMKDRIRE---------------AIEKKLEENPGNVHLERQATLVHSAP------- 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TIH+FC +++++ ++ F I ++ + K L ++ L EE Sbjct: 100 ITTIHSFCLSVIREHFHVIDLDPGFRIGEDGELKLLKQDVLDELLEECYSKGEEEFLSFT 159 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 ND IE +I LKL + SY + ++ Sbjct: 160 ERFGTGKNDRKIEGII---------LKLYEYSGSYPRPEQWLD 193 >gi|87200013|ref|YP_497270.1| UvrD/REP helicase [Novosphingobium aromaticivorans DSM 12444] gi|87135694|gb|ABD26436.1| UvrD/REP helicase [Novosphingobium aromaticivorans DSM 12444] Length = 1161 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 68/202 (33%), Positives = 106/202 (52%), Gaps = 3/202 (1%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 K Q A P R+ W+SA+AG+GKT +L RVLRLLL P LLCLT TKA AAE Sbjct: 6 PLKENQAHAVHPQRTVWLSASAGTGKTQVLSARVLRLLLQDGVEPEQLLCLTFTKAGAAE 65 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG-LKVQTI 136 M+ RV E++ +W L + L+ ++ I G + +++AR +L+ PGG L+++TI Sbjct: 66 MATRVNEVLASWVRLPEIELAQQLRAI-GAPFDPGTVARARSRFAAVLDCPGGGLRIETI 124 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFC+ ++ FP+EA + ++ L+ + L +EEL A + Sbjct: 125 HAFCQWLLASFPVEAGLRPGTRAMEDRDRALLVRQVLAEMLVEAGERGDEELLDALATLS 184 Query: 197 EISNDEDIETLISDIISNRTAL 218 +++ +E + S R Sbjct: 185 RRMSEDQVEAFLLRCASARDLW 206 >gi|239947179|ref|ZP_04698932.1| ATP-dependent helicase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921455|gb|EER21479.1| ATP-dependent helicase [Rickettsia endosymbiont of Ixodes scapularis] Length = 847 Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats. Identities = 71/205 (34%), Positives = 108/205 (52%), Gaps = 6/205 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q ASDP S WVSA+AG+GKT IL R LRLL+ PS +LCLT T AAA EM R+ Sbjct: 5 QQQASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQARIN 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + S + E L E+ + G KP+ + A+ L IL + L + TIHAFC+ I Sbjct: 65 SRLKYLSLCNAEKLEEELFLMSGNKPSPQETENAKTLYDKILNSNEPLNIYTIHAFCQKI 124 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ FP+EA+IT F I +E + + + + + D + +L K +L ++ Sbjct: 125 LKTFPVEADITPEFKILEETKLQDIFLNIRNEI---YLSDEHNDLIKI---LLNRFHEIT 178 Query: 204 IETLISDIISNRTALKLIFFFFSYL 228 ++ + ++II + K +F Sbjct: 179 LQDIFTEIIEQKIKFKKLFINTQIP 203 >gi|330991806|ref|ZP_08315755.1| ATP-dependent helicase/nuclease subunit A [Gluconacetobacter sp. SXCC-1] gi|329760827|gb|EGG77322.1| ATP-dependent helicase/nuclease subunit A [Gluconacetobacter sp. SXCC-1] Length = 1194 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 117/242 (48%), Gaps = 27/242 (11%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--------------NA 60 D I Q ASDP S +VSA+AGSGKT +LV R+LRL+L + Sbjct: 13 DAIGLANRSQAQASDPQASVFVSASAGSGKTKLLVDRLLRLMLPRDVPDRDGVMTRVPGS 72 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 P+ +LCLT TKAAAAEMS R+ + W L D L E+ ++ AR L Sbjct: 73 DPARILCLTFTKAAAAEMSIRLQNRLGQWVMLPDADLDRELARLS-VPTGVETRRVAREL 131 Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 +L+ PGG+++ TIHAFC++++++FP+EA I+ HF + +E ++ A + + Sbjct: 132 FARVLDLPGGMRIGTIHAFCQSLLRRFPIEAAISPHFTLIEETDARLAQRAAVEDVV--- 188 Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISN-RTALKLIFFFFSYLWRRKIIEKSLW 239 + A + + TLI + + R L + + + +E +L Sbjct: 189 -----GQGGPAVSTLAAQIGVGEFTTLIGRLQAQSRRILPVARRWQADP---ATVEAALM 240 Query: 240 SI 241 + Sbjct: 241 HL 242 >gi|94496379|ref|ZP_01302956.1| UvrD/REP helicase [Sphingomonas sp. SKA58] gi|94424125|gb|EAT09149.1| UvrD/REP helicase [Sphingomonas sp. SKA58] Length = 1144 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 64/196 (32%), Positives = 100/196 (51%), Gaps = 1/196 (0%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 +Q A+ P W+SA+AG+GKTH+L RV RLLL P +LCLT TKA AAEM+ R+ Sbjct: 17 DQARAAGPDAHVWLSASAGTGKTHVLTARVFRLLLQGVRPENILCLTFTKAGAAEMADRI 76 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + + AW + L+A++ + G+ AR L +LE+ GGL++QTIH FC+ Sbjct: 77 HDRLAAWVQMDGPALAADLMAL-GEDHGPQMQDHARRLFAEVLESTGGLRIQTIHGFCQQ 135 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 ++ FPLEA + F D+ + L + + + ++ L A + + Sbjct: 136 LLTAFPLEAELAPGFRPLDQREQSALARQTLADVVVRAQEEGDDPLMTALQSLSLRLGEG 195 Query: 203 DIETLISDIISNRTAL 218 E + + AL Sbjct: 196 GAEAFLMRCAARGEAL 211 >gi|331087018|ref|ZP_08336093.1| recombination helicase AddA [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409468|gb|EGG88911.1| recombination helicase AddA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 1229 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 34/229 (14%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 +S TK + + R+ VSA AGSGKT +LV+R++ L + P +L +T T+ Sbjct: 2 GVSWTKEQAQVIHLRNRNILVSAAAGSGKTAVLVERIITRLTVDEPPIDVDQMLVVTFTE 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAAEM R+ + I K ++P + + L+ + Sbjct: 62 AAAAEMKERIRD---------------AIEKKLEEQPENVHLQRQATLIHNA-------Q 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V TIH+FC ++++ + ++ F IADE + K L ++ + L + + Sbjct: 100 VTTIHSFCLSVIRDYFHMIDLDPGFRIADEGELKLLRQDVLEEVLENCYTAGEQSFLDCI 159 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +D+ IE +I L+L F S K + + + S Sbjct: 160 ESFAAGRDDKKIEEII---------LQLYEFSRSNPEPEKWLRQCVKSY 199 >gi|300023817|ref|YP_003756428.1| double-strand break repair helicase AddA [Hyphomicrobium denitrificans ATCC 51888] gi|299525638|gb|ADJ24107.1| double-strand break repair helicase AddA [Hyphomicrobium denitrificans ATCC 51888] Length = 1196 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 88/203 (43%), Positives = 118/203 (58%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L ++T Q A+DP SAWV ANAG+GKTH+L RVLRLLLA P +LCLT+TKAAA Sbjct: 13 LRAETDLHQGNAADPLASAWVRANAGTGKTHVLTLRVLRLLLAGTSPEKILCLTYTKAAA 72 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEMS RV + + W ++ L +I K+ G + + AR L +ETPGGLKVQT Sbjct: 73 AEMSRRVFDRLAGWVTADEKELEKDIRKVTGGDVSVETLQLARRLFANAIETPGGLKVQT 132 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IHAF E ++Q+FPLEA + F I D+ + L A + TL + L +A I Sbjct: 133 IHAFAERLLQRFPLEAGVPPDFKILDDAAAGDLKARAIEQTLLDATSEPETPLGRALDVI 192 Query: 196 LEISNDEDIETLISDIISNRTAL 218 + + D + LIS+ + R L Sbjct: 193 VRYATDTQFDKLISNAVEERRWL 215 >gi|307267168|ref|ZP_07548676.1| UvrD/REP helicase [Thermoanaerobacter wiegelii Rt8.B1] gi|306917819|gb|EFN48085.1| UvrD/REP helicase [Thermoanaerobacter wiegelii Rt8.B1] Length = 358 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 33/226 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T +QL + + V+A AGSGKT +LV+R+++L+ + +P LL +T T AAA Sbjct: 5 WTYEQQLAINTRGSNLLVAAGAGSGKTAVLVERIIKLVTDDKNPVDIDKLLVVTFTNAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ E + + + P +S LL + T Sbjct: 65 SEMRERIAEALIS---------------KLDQNPEDRRLSNQLTLL-------NKATITT 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ ++ +F I D+ ++ L EA + + + E F + Sbjct: 103 IHSFCLEVVRNNFFLIDLDPNFRIGDDTETLLLKLEAVEELFEELYQKEDNE---DFLTL 159 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +E + + DI+ LKL F S W K + L S Sbjct: 160 VESYGGTKDDKPLVDIL-----LKLYDFVKSLPWPEKWLRDVLLSF 200 >gi|226325452|ref|ZP_03800970.1| hypothetical protein COPCOM_03257 [Coprococcus comes ATCC 27758] gi|225206195|gb|EEG88549.1| hypothetical protein COPCOM_03257 [Coprococcus comes ATCC 27758] Length = 1214 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 34/224 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 + T+ +Q + + VSA AGSGKT +LV+R++ L +A+P +L +T+T+ Sbjct: 2 GVKWTEEQQQVIDLRDHNILVSAAAGSGKTAVLVERIIARLTRDANPVDVDHMLIVTYTE 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAAEM R+ A I K + P+ + + L+ T K Sbjct: 62 AAAAEMKERI---------------GAAIEKELEEDPSSEHLKRQSALIHTA-------K 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TIH+FC ++++++ ++ F IA+E + K L ++ K L + + NE+ + Sbjct: 100 ITTIHSFCLSVIREYFHTIDLDPGFRIAEEGELKLLKQDVMKELLEAKYEEGNEDFLRFV 159 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 D +E +IS +L F SY + ++ Sbjct: 160 ETFATGREDLQVEEIIS---------RLYEFAGSYPDPEEWLDD 194 >gi|160938156|ref|ZP_02085512.1| hypothetical protein CLOBOL_03050 [Clostridium bolteae ATCC BAA-613] gi|158438960|gb|EDP16716.1| hypothetical protein CLOBOL_03050 [Clostridium bolteae ATCC BAA-613] Length = 1331 Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 34/221 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 ++ T +Q + R+ VSA AGSGKT +LV+R+++++ P LL +T T A Sbjct: 3 VNWTSKQQEVIDSRNRNLLVSAAAGSGKTAVLVERIIQMISEGDRPLDIDQLLVMTFTNA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ A + + ++P + L+ ++ Sbjct: 63 AAAEMRERI---------------GAAVEQKLKERPEDEHLWLQAALIPQA-------QI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TI +FC I++ +I F I DE + L + L + + +EE + Sbjct: 101 TTIDSFCLNIIRSHYNSLDIDPAFRIGDEGELSLLRGDCMGEMLENCYDEADEEFGRFVE 160 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +D IE +I L+ F S+ W ++ + Sbjct: 161 HFGRGKSDRGIEDVI---------LQAWQFSQSHPWPQEWL 192 >gi|20806785|ref|NP_621956.1| ATP-dependent exoDNAse beta subunit [Thermoanaerobacter tengcongensis MB4] gi|81590788|sp|Q8RCZ0|ADDA_THETN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|20515247|gb|AAM23560.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Thermoanaerobacter tengcongensis MB4] Length = 1204 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 96/228 (42%), Gaps = 34/228 (14%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + T+ ++ + ++ V+A AGSGKT +LV+R++ ++ P LL +T T A Sbjct: 3 VKWTEEQREAITTRGKNVLVAAAAGSGKTAVLVERIINIVTDPEKPVDIDRLLVVTFTNA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA+EM R+ E + + + + P ++ LL + Sbjct: 63 AASEMRERIAERLIS---------------LLDQHPEDKRLADQLTLL-------NKATI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+FC ++++ ++ F + D+ ++ L EA + + N+E F Sbjct: 101 TTIHSFCLDVVRKHFFLLDLDPSFRVGDDTETLLLKLEAMEELFEELYEKNDE----GFL 156 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 ++E + + D++ LKL F S W K + L + Sbjct: 157 LLVESYGGTKGDQYLQDVL-----LKLYGFIRSLPWPEKWLNNVLEAF 199 >gi|91205173|ref|YP_537528.1| ATP-dependent helicase [Rickettsia bellii RML369-C] gi|157827491|ref|YP_001496555.1| ATP-dependent helicase [Rickettsia bellii OSU 85-389] gi|91068717|gb|ABE04439.1| ATP-dependent helicase [Rickettsia bellii RML369-C] gi|157802795|gb|ABV79518.1| ATP-dependent helicase [Rickettsia bellii OSU 85-389] Length = 809 Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 108/207 (52%), Gaps = 6/207 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q ASDP S WVSA+AG+GKT IL R LRLL+ + +LCLT T AA+ EM R+ Sbjct: 5 QQQASDPDYSIWVSASAGTGKTKILTDRFLRLLIKGVNFQNILCLTFTNAASIEMQLRIS 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + +S + L E+ + G+KP ++ A++L +L+ L + TIHAFC+ I Sbjct: 65 NKLKTFSLCDPKQLEQELFLMSGQKPLALELENAKNLYSKLLDNNEPLNIYTIHAFCQKI 124 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ FP+EA IT F I +E Q + + + + S +E +L ++ Sbjct: 125 LKIFPVEAGITPEFQILEETQLQDIFLKIRNEIYLS------DEHNDLIKTLLNRFHEIT 178 Query: 204 IETLISDIISNRTALKLIFFFFSYLWR 230 ++ + S+II + K +F + + Sbjct: 179 LQDIFSEIIDEKIKFKKLFTHKTIPAK 205 >gi|182679138|ref|YP_001833284.1| double-strand break repair helicase AddA [Beijerinckia indica subsp. indica ATCC 9039] gi|182635021|gb|ACB95795.1| double-strand break repair helicase AddA [Beijerinckia indica subsp. indica ATCC 9039] Length = 1164 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 87/216 (40%), Positives = 125/216 (57%), Gaps = 1/216 (0%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T Q ASDP S WVSA+AGSGKTH+L QRV+R+LL P+ +LCLT TKAAAA M+ Sbjct: 8 TLERQKKASDPATSIWVSAHAGSGKTHVLAQRVIRILLRGVPPAKILCLTFTKAAAANMA 67 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV + + W+ L D L EI P +D+ AR L +ETPGGLK+QT+HAF Sbjct: 68 ARVFDRLALWTRLDDATLRQEIIATGAPAPEAADLLLARKLFARTVETPGGLKIQTLHAF 127 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 CE ++ FP EAN+ S F++ +EE+ K+L E+A+ + L + L+ A + E Sbjct: 128 CEKLLHLFPFEANVPSRFSVVEEERQKELFEQARHTILHEA-EGKDHPLRGALALLTESC 186 Query: 200 NDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 + + E LI + ++ L + + RK ++ Sbjct: 187 SSDRFENLIKEAMARGALGPLATGHHAEIGLRKALD 222 >gi|332185666|ref|ZP_08387413.1| double-strand break repair helicase AddA [Sphingomonas sp. S17] gi|332014024|gb|EGI56082.1| double-strand break repair helicase AddA [Sphingomonas sp. S17] Length = 1148 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 69/220 (31%), Positives = 109/220 (49%), Gaps = 3/220 (1%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + K +Q ASDPT W+SA+AG+GKT +L RV RLLL P ++LCLT TKA AA Sbjct: 4 LPPLKGDQAAASDPTAHVWLSASAGTGKTQVLAARVFRLLLRGVAPESILCLTFTKAGAA 63 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG-LKVQT 135 EM+ R+ + AW + + L A++ K G+ +AR L +L+ PGG L++QT Sbjct: 64 EMAQRINGRLAAWVRMPETELFADL-KALGETAGPELRERARTLFARVLDAPGGGLRIQT 122 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH FC+ ++ FP+EA + F + + L EA L + + + + Sbjct: 123 IHGFCQGLLAAFPVEAGLAPGFRPLEAREEAVLAREALARMLETAEREGRVGPVETVGAL 182 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 + E ++ AL+ + W R+ ++ Sbjct: 183 SLRLGEGGAEAFLAACAHAPAALEALP-SGILPWLRRALD 221 >gi|157826193|ref|YP_001493913.1| ATP-dependent helicase [Rickettsia akari str. Hartford] gi|157800151|gb|ABV75405.1| ATP-dependent helicase [Rickettsia akari str. Hartford] Length = 818 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q ASDP S WVSA+AG+GKT IL R LRLL+ P+ +LCLT T +AA EM R+ Sbjct: 5 QQQASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPTNILCLTFTNSAAIEMKARIN 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + S E L E+ + G KP ++ A+ L IL++ L + TIHAFC+ I Sbjct: 65 SKLKHLSLCDAENLENELFLMSGNKPLPQEIENAKTLYDKILKSNEPLNIYTIHAFCQKI 124 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + FPLEA IT F I +E + + + + S +E +L ++ Sbjct: 125 LNTFPLEAGITPEFKILEETKLQDIFLNIRNEIYLS------DEHNDFIKILLNRFHEIT 178 Query: 204 IETLISDIISNRTALKLIFFFFSYLW 229 ++ + ++II + K +F + Sbjct: 179 LQDIFNEIIDQKIKFKKLFTHKTIPN 204 >gi|260752463|ref|YP_003225356.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551826|gb|ACV74772.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 1162 Score = 185 bits (469), Expect = 6e-45, Method: Composition-based stats. Identities = 65/192 (33%), Positives = 105/192 (54%), Gaps = 1/192 (0%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + ++EQL ASDP + W+SA+AG+GKTH+L RVLRLLL A P ++LCLT TKA AA Sbjct: 7 LMPLEAEQLQASDPKGNIWLSASAGTGKTHVLTARVLRLLLNRAAPESILCLTFTKAGAA 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS R+ + + W ++ E + G + ++ ++ AR L +L+ PGGL++QTI Sbjct: 67 EMSERINQRLAKWVIQLNDDELREELQALGARYDRDTLALARTLFARVLDAPGGLRIQTI 126 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC++++ FP+EA + F + + + ++ L + Sbjct: 127 HSFCQSLLTAFPVEAGLIPGFQLIEGREEATEAKKTLTRILDH-QTPPYHIKDDDIALLA 185 Query: 197 EISNDEDIETLI 208 E ++ E I Sbjct: 186 EKLGEQGAEDYI 197 >gi|56551994|ref|YP_162833.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis ZM4] gi|56543568|gb|AAV89722.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis ZM4] Length = 1162 Score = 184 bits (468), Expect = 7e-45, Method: Composition-based stats. Identities = 66/192 (34%), Positives = 106/192 (55%), Gaps = 1/192 (0%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + ++EQL ASDP + W+SA+AG+GKTH+L RVLRLLL A P ++LCLT TKA AA Sbjct: 7 LMPLEAEQLQASDPKGNIWLSASAGTGKTHVLTARVLRLLLNRAAPESILCLTFTKAGAA 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS R+ + + W ++ E + G + ++ ++ AR L +L+ PGGL++QTI Sbjct: 67 EMSERINQRLAKWVIQLNDDELREELQALGARYDRDTLALARTLFARVLDAPGGLRIQTI 126 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC++++ FP+EA + F + + + ++ L L + Sbjct: 127 HSFCQSLLTAFPVEAGLIPGFQLIEGREEATEAKKTLTRILDHQTL-PYHIKDDDIALLA 185 Query: 197 EISNDEDIETLI 208 E ++ E I Sbjct: 186 EKLGEQGAEDYI 197 >gi|238650390|ref|YP_002916242.1| ATP-dependent helicase [Rickettsia peacockii str. Rustic] gi|238624488|gb|ACR47194.1| ATP-dependent helicase [Rickettsia peacockii str. Rustic] Length = 822 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 71/205 (34%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q ASDP S WVSA+AG+GKT IL R LRLL+ PS +LCLT T AAA EM R+ Sbjct: 5 QREASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRIN 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + S + E L + + G KP+ D A+ L IL + L + TIHAFC+ I Sbjct: 65 SRLKYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKI 124 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + FPLEA IT F I +E + + + + + D + +L K +L ++ Sbjct: 125 LNTFPLEAGITPEFTILEETKLQDIFLNIRNEI---YLSDEHNDLMKI---LLNRFHEIT 178 Query: 204 IETLISDIISNRTALKLIFFFFSYL 228 ++ + ++II + + +F Sbjct: 179 LQDIFTEIIEQQIKFRKLFINKQIP 203 >gi|229587088|ref|YP_002845589.1| ATP-dependent helicase [Rickettsia africae ESF-5] gi|228022138|gb|ACP53846.1| ATP-dependent helicase [Rickettsia africae ESF-5] Length = 822 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 71/205 (34%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q ASDP S WVSA+AG+GKT IL R LRLL+ PS +LCLT T AAA EM R+ Sbjct: 5 QREASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRIN 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + S + E L + + G KP+ D A+ L IL + L + TIHAFC+ I Sbjct: 65 SRLKYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKI 124 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + FPLEA IT F I +E + + + + + D + +L K +L ++ Sbjct: 125 LNTFPLEAGITPEFKILEETKLQDIFLNIRNEI---YLSDEHNDLMKI---LLNRFHEIT 178 Query: 204 IETLISDIISNRTALKLIFFFFSYL 228 ++ + ++II + + +F Sbjct: 179 LQDIFTEIIEQKIKFRKLFINKQIP 203 >gi|34581275|ref|ZP_00142755.1| ATP-dependent helicase [Rickettsia sibirica 246] gi|28262660|gb|EAA26164.1| ATP-dependent helicase [Rickettsia sibirica 246] Length = 822 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 71/205 (34%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q ASDP S WVSA+AG+GKT IL R LRLL+ PS +LCLT T AAA EM R+ Sbjct: 5 QREASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRIN 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + S + E L + + G KP+ D A+ L IL + L + TIHAFC+ I Sbjct: 65 SRLKYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKI 124 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + FPLEA IT F I +E + + + + + D + +L K +L ++ Sbjct: 125 LNTFPLEAGITPEFKILEETKLQDIFLNIRNEI---YLSDEHNDLMKI---LLNRFHEIT 178 Query: 204 IETLISDIISNRTALKLIFFFFSYL 228 ++ + ++II + + +F Sbjct: 179 LQDIFTEIIEQKIKFRKLFINKQIP 203 >gi|15893037|ref|NP_360751.1| ATP-dependent helicase [Rickettsia conorii str. Malish 7] gi|15620238|gb|AAL03652.1| ATP-dependent helicase [Rickettsia conorii str. Malish 7] Length = 822 Score = 184 bits (468), Expect = 8e-45, Method: Composition-based stats. Identities = 71/205 (34%), Positives = 105/205 (51%), Gaps = 6/205 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q ASDP S WVSA+AG+GKT IL R LRLL+ PS +LCLT T AAA EM R+ Sbjct: 5 QREASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRIN 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + S + E L + + G KP+ D A+ L IL + L + TIHAFC+ I Sbjct: 65 SRLKYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKI 124 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + FPLEA IT F I +E + + + + + D + +L K +L ++ Sbjct: 125 LNTFPLEAGITPEFKILEETKLQDIFLNIRNEI---YLSDEHNDLMKI---LLNRFHEIT 178 Query: 204 IETLISDIISNRTALKLIFFFFSYL 228 ++ + ++II + + +F Sbjct: 179 LQDIFTEIIEQKIKFRKLFINKQIP 203 >gi|169343377|ref|ZP_02864381.1| ATP-dependent nuclease, subunit A [Clostridium perfringens C str. JGS1495] gi|169298463|gb|EDS80549.1| ATP-dependent nuclease, subunit A [Clostridium perfringens C str. JGS1495] Length = 1271 Score = 184 bits (468), Expect = 9e-45, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 96/226 (42%), Gaps = 34/226 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 TK ++L + + V+A AGSGKT +LV+R+++++ +P LL +T T AAA Sbjct: 5 WTKEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ + I+ K K P+ + + LL + T Sbjct: 65 SEMRERIGDAIS---------------KALEKDPSSEVLQRQLALL-------NRASITT 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++ ++ F I D+ + + + + LA + D + + F ++ Sbjct: 103 MHSFCLEVIKNNFHLIDLDPGFRIGDQTECELIKQ----DILADLFEDMYAKDDECFKDL 158 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +E + ++ II LK F S W ++ + Sbjct: 159 VEAYGGSKSDDNLNSII-----LKFYNFIMSGPWPETWLKDKVEEF 199 >gi|110802763|ref|YP_697370.1| recombination helicase AddA [Clostridium perfringens SM101] gi|123342114|sp|Q0SWW4|ADDA_CLOPS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|110683264|gb|ABG86634.1| recombination helicase AddA [Clostridium perfringens SM101] Length = 1270 Score = 184 bits (468), Expect = 9e-45, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 34/226 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T+ ++L + + V+A AGSGKT +LV+R+++++ +P LL +T T AAA Sbjct: 5 WTEEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ + I+ K K P+ + + LL + T Sbjct: 65 SEMRERIGDAIS---------------KALEKDPSSEVLQRQLALL-------NRASITT 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++ ++ F I D+ + + + + LA + D + + F ++ Sbjct: 103 MHSFCLEVIKNNFHLIDLDPGFRIGDQTECELIKQ----DILADLFEDMYAKDDECFKDL 158 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +E + ++ II LK F S W ++ + Sbjct: 159 VEAYGGSKSDDNLNSII-----LKFYNFIMSGPWPESWLKDKVEEF 199 >gi|168214037|ref|ZP_02639662.1| ATP-dependent nuclease, subunit A [Clostridium perfringens CPE str. F4969] gi|170714486|gb|EDT26668.1| ATP-dependent nuclease, subunit A [Clostridium perfringens CPE str. F4969] Length = 1271 Score = 184 bits (467), Expect = 9e-45, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 34/226 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T+ ++L + + V+A AGSGKT +LV+R+++++ +P LL +T T AAA Sbjct: 5 WTEEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ + I+ K K P+ + + LL + T Sbjct: 65 SEMRERIGDAIS---------------KALEKDPSSEVLQRQLALL-------NRASITT 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++ ++ F I D+ + + + + LA + D + + F ++ Sbjct: 103 MHSFCLEVIKNNFHLIDLDPGFRIGDQTECELIKQ----DILADLFEDMYAKDDECFKDL 158 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +E + ++ II LK F S W + + Sbjct: 159 VESYGGSKSDDNLNSII-----LKFYNFIMSGPWPEAWLNDKVEEF 199 >gi|168217733|ref|ZP_02643358.1| ATP-dependent nuclease, subunit A [Clostridium perfringens NCTC 8239] gi|182380203|gb|EDT77682.1| ATP-dependent nuclease, subunit A [Clostridium perfringens NCTC 8239] Length = 1271 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 34/226 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T+ ++L + + V+A AGSGKT +LV+R+++++ +P LL +T T AAA Sbjct: 5 WTEEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ + I+ K K P+ + + LL + T Sbjct: 65 SEMRERIGDAIS---------------KALEKDPSSEVLQRQLALL-------NRASITT 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++ ++ F I D+ + + + + LA + D + + F ++ Sbjct: 103 MHSFCLEVIKNNFHLIDLDPGFRIGDQTECELIKQ----DILADLFEDMYAKDDECFKDL 158 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +E + ++ II LK F S W + + Sbjct: 159 VEAYGGSKSDDNLNSII-----LKFYNFIMSGPWPEAWLNDKVEEF 199 >gi|67458566|ref|YP_246190.1| ATP-dependent helicase [Rickettsia felis URRWXCal2] gi|67004099|gb|AAY61025.1| ATP-dependent helicase [Rickettsia felis URRWXCal2] Length = 815 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 69/205 (33%), Positives = 107/205 (52%), Gaps = 6/205 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q ASDP S WVSA+AG+GKT IL R LRLL+ P+ +LCLT T AA+ EM R+ Sbjct: 5 QQQASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPANILCLTFTNAASIEMQARIN 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + S + L E+ + G KP ++ A+ L IL + L + TIHAFC+ I Sbjct: 65 SRLKHLSLCDTKKLEEELFLMSGNKPLPQEIENAKTLYDKILNSNEPLNIYTIHAFCQKI 124 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ FPLEA IT F I +E + + + + + D + +L K +L ++ Sbjct: 125 LKTFPLEAGITPEFKILEETKLQDIFLNIRNEI---YLSDEHNDLIKI---LLNRFHEIT 178 Query: 204 IETLISDIISNRTALKLIFFFFSYL 228 ++ + ++II + K +F + Sbjct: 179 LQDIFTEIIEQKIKFKKLFTHKTIP 203 >gi|312113012|ref|YP_004010608.1| double-strand break repair helicase AddA [Rhodomicrobium vannielii ATCC 17100] gi|311218141|gb|ADP69509.1| double-strand break repair helicase AddA [Rhodomicrobium vannielii ATCC 17100] Length = 1282 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 70/206 (33%), Positives = 119/206 (57%), Gaps = 3/206 (1%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 +++ +Q A+DP+ SAWV ANAG+GKTH+LVQR+LRL LA A P ++LCLT TK AAA Sbjct: 10 LAEASRKQRSAADPSVSAWVRANAGTGKTHVLVQRILRLCLAGAAPRSILCLTFTKNAAA 69 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RVL+ + W+ L A + + + +++ AR L T+ + PGGL + TI Sbjct: 70 EMEARVLKTMGEWATADAATLEAALAALLDRPAEAGELAAARTLFATVTDAPGGLPIMTI 129 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFCE ++++F EAN+ F + EE+++ + A+ + ++ A + Sbjct: 130 HAFCERLLRRFSFEANVPPGFTVMTEEEARD---ALAAAKAAAFSEAKSGAMRDALATAV 186 Query: 197 EISNDEDIETLISDIISNRTALKLIF 222 + +++ ++ D++ +R + + Sbjct: 187 AHAGEDEFGRVLKDMLGHRRTIHYLL 212 >gi|18309003|ref|NP_560937.1| ATP-dependent deoxyribonuclease chain A [Clostridium perfringens str. 13] gi|81768348|sp|Q8XPE2|ADDA_CLOPE RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|18143678|dbj|BAB79727.1| ATP-dependent deoxyribonuclease chain A [Clostridium perfringens str. 13] Length = 1268 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 34/226 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T+ ++L + + V+A AGSGKT +LV+R+++++ +P LL +T T AAA Sbjct: 5 WTEEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ + I+ K K P+ + + LL + T Sbjct: 65 SEMRERIGDAIS---------------KALEKDPSSKVLQRQLALL-------NRASITT 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++ ++ F I D+ + + + + LA + D + + F ++ Sbjct: 103 MHSFCLEVIKNNFHLIDLDPGFRIGDQTECELIKQ----DILADLFEDMYAKDDECFKDL 158 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +E + ++ II LK F S W ++ + Sbjct: 159 VEAYGGSKSDDNLNSII-----LKFYNFIMSGPWPEAWLKDKVEEF 199 >gi|110799297|ref|YP_694494.1| ATP-dependent nuclease, subunit A [Clostridium perfringens ATCC 13124] gi|122959147|sp|Q0TV46|ADDA_CLOP1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|110673944|gb|ABG82931.1| ATP-dependent nuclease, subunit A [Clostridium perfringens ATCC 13124] Length = 1271 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 34/226 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T+ ++L + + V+A AGSGKT +LV+R+++++ +P LL +T T AAA Sbjct: 5 WTEEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ + I+ K K P+ + + LL + T Sbjct: 65 SEMRERIGDAIS---------------KALEKDPSSEALQRQLALL-------NRASITT 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++ ++ F I D+ + + + + LA + D + + F ++ Sbjct: 103 MHSFCLEVIKNNFHLIDLDPGFRIGDQTECELIKQ----DILADLFEDMYAKDDECFKDL 158 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +E + ++ II LK F S W ++ + Sbjct: 159 VEAYGGSKSDDNLNSII-----LKFYNFIMSGPWPETWLKDKVEEF 199 >gi|168210476|ref|ZP_02636101.1| ATP-dependent nuclease, subunit A [Clostridium perfringens B str. ATCC 3626] gi|170711446|gb|EDT23628.1| ATP-dependent nuclease, subunit A [Clostridium perfringens B str. ATCC 3626] Length = 1271 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 34/226 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T+ ++L + + V+A AGSGKT +LV+R+++++ +P LL +T T AAA Sbjct: 5 WTEEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ + I+ K K P+ + + LL + T Sbjct: 65 SEMRERIGDAIS---------------KALEKDPSSEVLQRQLALL-------NRASITT 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++ ++ F I D+ + + + + LA + D + + F ++ Sbjct: 103 MHSFCLEVIKNNFHLIDLDPGFRIGDQTECELIKQ----DILADLFEDMYAKDDECFKDL 158 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +E + ++ II LK F S W + + Sbjct: 159 VEAYGGSKSDDNLNSII-----LKFYNFIMSGPWPEAWLNDKVEEF 199 >gi|182625416|ref|ZP_02953189.1| recombination helicase AddA [Clostridium perfringens D str. JGS1721] gi|177909413|gb|EDT71865.1| recombination helicase AddA [Clostridium perfringens D str. JGS1721] Length = 1271 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 34/226 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T+ ++L + + V+A AGSGKT +LV+R+++++ +P LL +T T AAA Sbjct: 5 WTEEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ + I+ K K P+ + + LL + T Sbjct: 65 SEMRERIGDAIS---------------KALEKDPSSEVIQRQLALL-------NRASITT 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++ ++ F I D+ + + + + LA + D + + F ++ Sbjct: 103 MHSFCLEVIKNNFHLIDLDPGFRIGDQTECELIKQ----DILADLFEDMYAKDDECFKDL 158 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +E + ++ II LK F S W + + Sbjct: 159 VESYGGSKSDDNLNSII-----LKFYNFIMSGPWPEAWLNDKVEEF 199 >gi|291549061|emb|CBL25323.1| recombination helicase AddA, Firmicutes type [Ruminococcus torques L2-14] Length = 1239 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 34/223 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + T+ +Q + R+ VSA AGSGKT +LV+R++ + P LL +T+T+A Sbjct: 3 VKWTEEQQKVIDLRDRNILVSAAAGSGKTAVLVERIISRITDENDPADVDRLLVVTYTEA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ A I K ++P ++ + L+ + Sbjct: 63 AAAEMKERI---------------GAAIEKKLEEQPGNVNLEQQSTLIHNA-------SI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+FC ++++ I F IA+E + + L+++ + + + + +E Sbjct: 101 MTIHSFCLSVIRDHFHVIGIDPAFRIAEEGELRLLMQDVLEELIENFYAEGSEAFLNFVD 160 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + ND+ IE LI L+L + SY K +++ Sbjct: 161 QYGTGRNDQKIEELI---------LQLYEYSRSYPQPEKWLKE 194 >gi|212640054|ref|YP_002316574.1| ATP-dependent exoDNAse (exonuclease V) subunit beta (contains helicase and exonuclease domains) [Anoxybacillus flavithermus WK1] gi|251764497|sp|B7GM51|ADDA_ANOFW RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|212561534|gb|ACJ34589.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Anoxybacillus flavithermus WK1] Length = 1209 Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 34/221 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + + V+A AGSGKT +LV+R+++ +L P LL +T T AAA Sbjct: 11 WTDEQWQAIYATGQHTLVAAAAGSGKTAVLVERIIQKILHKERPIDVDRLLVVTFTNAAA 70 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ E + + K+P+ + + LL + T Sbjct: 71 AEMRQRIGEAL---------------ERALEKEPHSLHLRRQLSLLQKA-------SIST 108 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++++ I F IADE + L EE ++ +N+E Sbjct: 109 IHSFCLDVIRKYYYVIGIDPVFRIADEGEMALLKEEVLETLFEQYYAENDEPFLTVVDRY 168 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 D D++TLI L+L F S+ +++ Sbjct: 169 TSDRTDADLQTLI---------LRLYEFSRSHPNPSGWLQQ 200 >gi|291562493|emb|CBL41309.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [butyrate-producing bacterium SS3/4] Length = 571 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 59/228 (25%), Positives = 93/228 (40%), Gaps = 37/228 (16%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T ++ + R+ VSA AGSGKT +LV+R++R++ HP LL +T T AAA Sbjct: 5 WTDEQKKVIETRHRNLLVSAAAGSGKTAVLVERIIRMITDPEHPVDIDKLLVMTFTNAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM RV + K+ + P ++ + L+ K+ T Sbjct: 65 AEMRERVETALG---------------KLLDEDPGNKNLERQNTLIHHA-------KITT 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++++ E ++ F +ADE + L + K L +E K Sbjct: 103 IDSFCLNLLREHFHELDLDPGFRVADEGELMLLKADVMKELLEEYYGREDERFIKFVDTY 162 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII---EKSLWS 240 D +E I LK+ F S W + I K LW+ Sbjct: 163 ATGRTDGGLEEYI---------LKVWEFSQSNPWPGEWIAACRKELWA 201 >gi|15604569|ref|NP_221087.1| ATP-dependent nuclease subunit A (addA) [Rickettsia prowazekii str. Madrid E] gi|3861264|emb|CAA15163.1| ATP-DEPENDENT NUCLEASE SUBUNIT A (addA) [Rickettsia prowazekii] gi|292572376|gb|ADE30291.1| ATP-dependent helicase [Rickettsia prowazekii Rp22] Length = 822 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 67/205 (32%), Positives = 106/205 (51%), Gaps = 6/205 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q AS+P S WVSA+AG+GKT IL+ R LRLL+ P+ +LCLT T AAA EM R+ Sbjct: 5 QQQASNPNTSVWVSASAGTGKTKILIDRFLRLLITGTEPTNILCLTFTNAAAIEMQARIN 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + E L E+ + G KP +++ + L +L + L + TIHAFC+ I Sbjct: 65 SKLKYLALCDAEKLENELFLMSGNKPLPQEIANTKTLYYKLLNSHEPLNIYTIHAFCQKI 124 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ FPLEA IT F I +E + + + + K S +E + +L ++ Sbjct: 125 LKTFPLEAGITPEFKILEETKLQDIFLKIKNEIYLS------DEHNEVIQILLNRFHEIT 178 Query: 204 IETLISDIISNRTALKLIFFFFSYL 228 ++ + ++II + K +F Sbjct: 179 LQDIFTEIIEQKIKFKKLFINKQIP 203 >gi|51473902|ref|YP_067659.1| ATP-dependent helicase/nuclease [Rickettsia typhi str. Wilmington] gi|51460214|gb|AAU04177.1| ATP-dependent helicase/nuclease [Rickettsia typhi str. Wilmington] Length = 823 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 68/205 (33%), Positives = 106/205 (51%), Gaps = 6/205 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q AS+P S WVSA+AG+GKT IL+ R LRLL+ P+ +LCLT T AAA EM R+ Sbjct: 5 QQQASNPNTSVWVSASAGTGKTKILIDRFLRLLITGTEPTNILCLTFTNAAAIEMQARIN 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + E L+ E+ + G KP ++ + L +L + L + TIHAFC+ I Sbjct: 65 SKLKHLALCDTEKLANELFLMSGNKPLAQEIENTKTLYYKLLNSHEPLNIYTIHAFCQKI 124 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ FPLEA IT F I +E + + + + K S +E K +L ++ Sbjct: 125 LKTFPLEAGITPEFKILEETKLQDIFLKIKNEIYLS------DEHNKLIQILLNRFHEMT 178 Query: 204 IETLISDIISNRTALKLIFFFFSYL 228 ++ + ++II + K +F Sbjct: 179 LQDIFTEIIEQKIKFKKLFINKQIP 203 >gi|168206214|ref|ZP_02632219.1| ATP-dependent nuclease, subunit A [Clostridium perfringens E str. JGS1987] gi|170662326|gb|EDT15009.1| ATP-dependent nuclease, subunit A [Clostridium perfringens E str. JGS1987] Length = 1271 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 95/226 (42%), Gaps = 34/226 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T+ ++L + + V+A AGSGKT +LV+R+++++ +P LL +T T AAA Sbjct: 5 WTEEQELAINTRKCNLLVAAAAGSGKTAVLVERIIKMITEGENPVDIDKLLVVTFTNAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ + I+ K K P+ + + LL + T Sbjct: 65 SEMRERIGDAIS---------------KALEKDPSSEVLQRQLALL-------NRASITT 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++ ++ F I D+ + + + + L + D + + F ++ Sbjct: 103 MHSFCLEVIKNNFHLIDLDPGFRIGDQTECELIKQ----DILGDLFEDMYAKDDECFKDL 158 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +E + ++ II LK F S W ++ + Sbjct: 159 VEAYGGSKSDDNLNSII-----LKFYNFIMSGPWPEAWLKDKVEEF 199 >gi|167761630|ref|ZP_02433757.1| hypothetical protein CLOSCI_04042 [Clostridium scindens ATCC 35704] gi|167660773|gb|EDS04903.1| hypothetical protein CLOSCI_04042 [Clostridium scindens ATCC 35704] Length = 1200 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 54/228 (23%), Positives = 93/228 (40%), Gaps = 34/228 (14%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 ++ TK +Q + R+ VSA AGSGKT +LV+R++ +L + P LL +T T+A Sbjct: 3 VTWTKEQQKVIDLRNRNILVSAAAGSGKTAVLVERIITMLTEDESPVDVDRLLIVTFTEA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ I K + P + + L+ ++ Sbjct: 63 AAAEMKERIRN---------------AIEKKLEEYPGNEHLKQQATLIHNA-------QI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+FC ++++ +I F I +E + K L + + L N + Sbjct: 101 TTIHSFCLSVIRDHFHAIDIDPGFRIGEEGELKLLRHDVLEDMLEDRYQRNEQRFLDFAA 160 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +D+ +E L+ LK+ + SY + L + Sbjct: 161 AYGGGRSDKKVEELV---------LKIYEYSRSYPDSEGWLSSCLEAY 199 >gi|239625645|ref|ZP_04668676.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519875|gb|EEQ59741.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1326 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 89/223 (39%), Gaps = 34/223 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + T+ +Q + R+ VSA AGSGKT +LV+R+++++ HP LL +T T A Sbjct: 3 VKWTEKQQQVIDSRNRNLLVSAAAGSGKTAVLVERIIQMISGGDHPLDIDQLLVMTFTNA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ A + K + P + L+ + + Sbjct: 63 AAAEMRERI---------------GAAVEKKLKEHPEDEHLWLQAALIPQAM-------I 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TI +FC I++ +I F I DE + L + L + + +E Sbjct: 101 TTIDSFCLNIIRNHFNSLDIDPSFRIGDEGELSLLRGDVMGEMLEACYEEGDEAFAGFVE 160 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +D+ IE +I L+ F S+ W ++ Sbjct: 161 HFGRGKSDKGIEDVI---------LQAWQFSQSHPWPSLWLKA 194 >gi|165933684|ref|YP_001650473.1| ATP-dependent nuclease subunit A [Rickettsia rickettsii str. Iowa] gi|165908771|gb|ABY73067.1| ATP-dependent nuclease subunit A [Rickettsia rickettsii str. Iowa] Length = 822 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 70/205 (34%), Positives = 104/205 (50%), Gaps = 6/205 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q ASDP S WVSA+AG+GKT IL R LRLL+ PS +LCLT T AAA EM R+ Sbjct: 5 QREASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRIN 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + S + E L + + G KP+ D A+ L IL + L + TIHAFC+ I Sbjct: 65 SRLKYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKI 124 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + FP EA IT F I +E + + + + + D + +L K +L ++ Sbjct: 125 LNTFPSEAGITPEFTILEETKLQDIFLNIRNEI---YLSDEHNDLMKI---LLNRFHEIT 178 Query: 204 IETLISDIISNRTALKLIFFFFSYL 228 ++ + ++II + + +F Sbjct: 179 LQDIFTEIIEQQIKFRKLFINKQIP 203 >gi|157828959|ref|YP_001495201.1| ATP-dependent helicase [Rickettsia rickettsii str. 'Sheila Smith'] gi|157801440|gb|ABV76693.1| ATP-dependent helicase [Rickettsia rickettsii str. 'Sheila Smith'] Length = 822 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 70/205 (34%), Positives = 104/205 (50%), Gaps = 6/205 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q ASDP S WVSA+AG+GKT IL R LRLL+ PS +LCLT T AAA EM R+ Sbjct: 5 QREASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRIN 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + S + E L + + G KP+ D A+ L IL + L + TIHAFC+ I Sbjct: 65 SRLKYLSLCNAEKLEEALFLMSGNKPSPQDTENAKTLYDKILNSNKLLNIYTIHAFCQKI 124 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + FP EA IT F I +E + + + + + D + +L K +L ++ Sbjct: 125 LNTFPSEAGITPEFTILEETKLQDIFLNIRNEI---YLSDEHNDLMKI---LLNRFHEIT 178 Query: 204 IETLISDIISNRTALKLIFFFFSYL 228 ++ + ++II + + +F Sbjct: 179 LQDIFTEIIEQQIKFRKLFINKQIP 203 >gi|121535716|ref|ZP_01667519.1| UvrD-like DNA helicase, C terminal [Thermosinus carboxydivorans Nor1] gi|121305681|gb|EAX46620.1| UvrD-like DNA helicase, C terminal [Thermosinus carboxydivorans Nor1] Length = 1246 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 99/223 (44%), Gaps = 34/223 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 + + + ++ ++ V+A AGSGKT +LVQR++ +L P LL +T T Sbjct: 1 MSNWSPEQRAAIEARGQNLLVAAAAGSGKTSVLVQRIIDRILDKTAPVNVDALLVVTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAAEM R+ + +TA + L L Sbjct: 61 AAAAEMRERIAQALTAELAKGERT----------------------RYLERQLLLLNQAS 98 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TIH+FC+++++Q+ ++ F IA E ++ L + TL +++ + E+ +AF Sbjct: 99 ISTIHSFCQSVVRQYFYRLDLDPQFRIAGEGETTLL----RSDTLEALLAERYEQGDEAF 154 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 +++ DE ++ ++ +I L+L F S W + Sbjct: 155 LTLVDHYGDERDDSSLAGLI-----LRLYEFARSQPWPEHWLR 192 >gi|209543463|ref|YP_002275692.1| double-strand break repair helicase AddA [Gluconacetobacter diazotrophicus PAl 5] gi|209531140|gb|ACI51077.1| double-strand break repair helicase AddA [Gluconacetobacter diazotrophicus PAl 5] Length = 1185 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 122/241 (50%), Gaps = 27/241 (11%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL----------------LL 57 +D I + Q ASDP S +VSA+AGSGKT +L+ R+LRL LL Sbjct: 4 LDAIGLANARQGEASDPGASVFVSASAGSGKTKLLIDRLLRLMLPRPAPDARGDGAGDLL 63 Query: 58 ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA 117 A A P+ + CLT TKAAAAEM+ R+ + + +W L D L E+ + P ++ A Sbjct: 64 AGADPARIQCLTFTKAAAAEMAIRLQKRLGSWVTLPDASLDRELAFLS-VPPCEATRRAA 122 Query: 118 RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 R L +L+ PGG+++ TIHAFC++++++FP+EA I+ HF + ++ ++ + E+ ++ + Sbjct: 123 RELFARVLDLPGGMRIGTIHAFCQSLLRRFPVEAAISPHFTLVEDTDARIAMGESVEAVV 182 Query: 178 ASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 A + D LI + + L+ + R IE + Sbjct: 183 GG--------GGPAVAILASQIGAGDFAALIGGLQARLRQLQPVITALEQD--RAAIEAA 232 Query: 238 L 238 L Sbjct: 233 L 233 >gi|225570785|ref|ZP_03779808.1| hypothetical protein CLOHYLEM_06888 [Clostridium hylemonae DSM 15053] gi|225160247|gb|EEG72866.1| hypothetical protein CLOHYLEM_06888 [Clostridium hylemonae DSM 15053] Length = 1204 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 34/223 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 ++ T+ +Q + R+ VSA AGSGKT +LV+R++ +L P +LL +T T+A Sbjct: 3 VAWTEEQQKVIDLRKRNILVSAAAGSGKTAVLVERIIAMLTDAEDPVSVESLLIVTFTEA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ + I K + + L+ + ++ Sbjct: 63 AAAEMKERIRD---------------AIEKKISEDGENEHLKTQATLIHSA-------QI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+FC ++++ +I F +A+E + K + K L ++ DN EE +AF Sbjct: 101 TTIHSFCLSVIRDHFHAIDIDPGFRVAEEGELKLM----KHDVLGQVLEDNYEEGGEAFQ 156 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 E +E + I +++ LKL + SY ++ Sbjct: 157 EFVEAYGSGRDDRKIEELV-----LKLYEYSRSYPDPGGWLQS 194 >gi|241761923|ref|ZP_04760008.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373603|gb|EER63175.1| double-strand break repair helicase AddA [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 1162 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 64/192 (33%), Positives = 104/192 (54%), Gaps = 1/192 (0%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + ++EQL ASDP + W+SA+AG+GKTH+L RVLRLLL A P ++LCLT TKA AA Sbjct: 7 LMPLEAEQLQASDPKGNIWLSASAGTGKTHVLTARVLRLLLNRAAPESILCLTFTKAGAA 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS R+ + + W ++ E + G + ++ ++ AR L +L+ GGL++QTI Sbjct: 67 EMSERINQRLAKWVIQLNDDELREELQALGARYDRDTLALARTLFARVLDATGGLRIQTI 126 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC++++ FP+EA + F + + + ++ L + Sbjct: 127 HSFCQSLLTAFPVEAGLIPGFQLIEGREEATEAKKTLTRILDH-QTPPYHIKDDDIALLA 185 Query: 197 EISNDEDIETLI 208 E ++ E I Sbjct: 186 EKLGEQGAEDYI 197 >gi|164687184|ref|ZP_02211212.1| hypothetical protein CLOBAR_00825 [Clostridium bartlettii DSM 16795] gi|164603608|gb|EDQ97073.1| hypothetical protein CLOBAR_00825 [Clostridium bartlettii DSM 16795] Length = 1349 Score = 182 bits (461), Expect = 6e-44, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 34/231 (14%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTH 70 + T+ +Q + + V+A AGSGKT +LV+R+++++L LL +T Sbjct: 1 MSSPKWTQEQQNVIDSRGGNLLVAAAAGSGKTAVLVERIIQMILNSDLKIDIDKLLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAA+EM R+ + I+ K + P + LL Sbjct: 61 TNAAASEMRERIGDAIS---------------KKLDENPEDEHLQDQLVLL-------NK 98 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + TIH+FC +++ + N+ +F I DE + + EA T + N+EE Sbjct: 99 ASITTIHSFCLEVIKSNFHKINLDPNFRIGDETECSLMKLEAIDETFDILYEQNDEEFCY 158 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 E D +++ LI L + F S + + +++S Sbjct: 159 LVDCYAEKRGDSNLQNLI---------LSIYSFVMSSPYPKVWLKESAEDF 200 >gi|225574652|ref|ZP_03783262.1| hypothetical protein RUMHYD_02729 [Blautia hydrogenotrophica DSM 10507] gi|225038120|gb|EEG48366.1| hypothetical protein RUMHYD_02729 [Blautia hydrogenotrophica DSM 10507] Length = 1221 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 34/224 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 ++ T ++ + R+ VSA AGSGKT +LV+R+++ + P LL +T T+ Sbjct: 2 GVNWTSEQRKVIELRDRNILVSAAAGSGKTAVLVERIIQRITDEEKPVDIDRLLVMTFTR 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA EM R+ + ++ K + P + + LL + Sbjct: 62 AAAGEMRVRLEQALS---------------KRLEEDPENEYLQRQSTLLHNA-------Q 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TI FC +++ + ++ + ADE + K L + + L + + ++ Sbjct: 100 ITTIDGFCSYLIRNYFHMIDLDPGYRTADEGELKLLRVDVVREVLEECYAQKSSDFEEFA 159 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +DE +E L+ LKL F S W + + + Sbjct: 160 ECFAPGKSDEGLEELV---------LKLYDFAMSAPWPEEWLSQ 194 >gi|225388060|ref|ZP_03757784.1| hypothetical protein CLOSTASPAR_01794 [Clostridium asparagiforme DSM 15981] gi|225045883|gb|EEG56129.1| hypothetical protein CLOSTASPAR_01794 [Clostridium asparagiforme DSM 15981] Length = 383 Score = 181 bits (460), Expect = 8e-44, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 34/221 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + T+ +Q + R+ VSA AGSGKT +LV+R++R++ HP LL +T T A Sbjct: 3 VKWTEKQQQVIHSRNRNLLVSAAAGSGKTAVLVERIIRMISEGEHPLNIDQLLVMTFTNA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM RV A + K+ P+ + L+ ++ Sbjct: 63 AAAEMRERV---------------GAAVDKLLTVCPDDEHLWLQGALIPQA-------QI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TI +FC +++ I F I DE + + + K L + E+ Sbjct: 101 TTIDSFCLNLIRNHYSSLEIDPAFRIGDEGELALMRADVMKEMLEWHYQEGGEDFAAFVE 160 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 + +D IE +I L+ F S+ W + + Sbjct: 161 QFGRGKSDAGIEDVI---------LQAWQFSQSHPWPMEWV 192 >gi|329847172|ref|ZP_08262200.1| double-strand break repair helicase AddA [Asticcacaulis biprosthecum C19] gi|328842235|gb|EGF91804.1| double-strand break repair helicase AddA [Asticcacaulis biprosthecum C19] Length = 1174 Score = 181 bits (459), Expect = 8e-44, Method: Composition-based stats. Identities = 78/208 (37%), Positives = 119/208 (57%), Gaps = 7/208 (3%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 +A+DP S +++ANAGSGKT LV RV RLLL+ A P+ +LC+T+TKAAAAEM R+ + Sbjct: 19 IAADPKASCFLTANAGSGKTSTLVNRVARLLLSRADPAHILCVTYTKAAAAEMQERLFQQ 78 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + W+ DE L ++ +I D+ +AR L LETPGGLK+QTIHAFCE +++ Sbjct: 79 LGGWAVADDEQLIGDLERIGEP---THDLPRARALFAKALETPGGLKIQTIHAFCEKLLR 135 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 +FPLEA ++ F + D+ + L ++A + L ++ E + + ++ E Sbjct: 136 RFPLEAQLSPAFKVLDDLLADDLADKASTAVL-TLDAPGLEAVAETRDRLIRKLKVMGFE 194 Query: 206 TLISDIISNRTALKLIF---FFFSYLWR 230 L+ I AL+ F S W+ Sbjct: 195 KLLGQFIHQHDALQERFRHLENQSEDWQ 222 >gi|289577484|ref|YP_003476111.1| recombination helicase AddA [Thermoanaerobacter italicus Ab9] gi|289527197|gb|ADD01549.1| recombination helicase AddA [Thermoanaerobacter italicus Ab9] Length = 1230 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 33/227 (14%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74 + T +QL + + V+A AGSGKT +LV+R++RL+ +P LL +T T AA Sbjct: 4 TWTHEQQLAINTRGNNLLVAAGAGSGKTAVLVERIIRLITDKENPVDIDRLLVVTFTNAA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM R+ + + + + P +S LL + Sbjct: 64 ASEMRERIADALIS---------------KLDQNPEDRRLSNQLTLL-------NKATIT 101 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TIH+FC +++ ++ +F I D+ ++ L EA + + + + F Sbjct: 102 TIHSFCLEVVRNNFFLIDLDPNFRIGDDTETLLLKLEAAEELFEELYQKED---NQDFLM 158 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 ++E + + D++ L+L F S W K + + L + Sbjct: 159 LIESYGGTRDDKPLVDVL-----LRLYNFVKSLPWPEKWLMEMLLNF 200 >gi|158321312|ref|YP_001513819.1| recombination helicase AddA [Alkaliphilus oremlandii OhILAs] gi|251764496|sp|A8MJ41|ADDA_ALKOO RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|158141511|gb|ABW19823.1| Recombination helicase AddA [Alkaliphilus oremlandii OhILAs] Length = 1197 Score = 181 bits (459), Expect = 9e-44, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 98/228 (42%), Gaps = 31/228 (13%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 + TK +Q + V+A AGSGKT +LV+R+++++L + LL +T T AA Sbjct: 1 MRQWTKEQQAAIDARGSNLLVAAAAGSGKTAVLVERIIQIILKDRIDIDRLLIVTFTNAA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ I +T+++ K + + + LL + Sbjct: 61 AGEMRERIAGAI--------------MTEMEKKTGGEEHLRRQLSLL-------NRASIT 99 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+H+FC ++++ ++ F I D ++ + EA L + D E+ + F+ Sbjct: 100 TVHSFCIDVVRRHFHMIDVDPGFRIGDVTETSIMKLEA----LEELFEDEYEKGNEEFFN 155 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 ++E + + D++ LK+ F S + + + + A Sbjct: 156 LVEAFGGTREDRPLQDLV-----LKIYGFIQSQPYPEIWLRERVEDFA 198 >gi|157964875|ref|YP_001499699.1| ATP-dependent helicase [Rickettsia massiliae MTU5] gi|157844651|gb|ABV85152.1| ATP-dependent helicase [Rickettsia massiliae MTU5] Length = 822 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 68/205 (33%), Positives = 102/205 (49%), Gaps = 6/205 (2%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 Q ASDP S WVSA+AG+GKT IL R LRLL+ PS +LCLT T AAA EM R+ Sbjct: 5 QREASDPNYSVWVSASAGTGKTKILTDRFLRLLITGVEPSNILCLTFTNAAAIEMQVRIN 64 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + S + E L + + G KP+ + A+ L IL + L + TIHAFC+ I Sbjct: 65 SRLKYLSLCNAEKLEEALFLMSGNKPSPQETENAKTLYDKILNSNKLLNIYTIHAFCQKI 124 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ PLEA IT F I +E + + + + S +E +L ++ Sbjct: 125 LKTVPLEAGITPEFKILEETKLQDIFLNIRNEIYLS------DEHNDLITILLNRFHEIT 178 Query: 204 IETLISDIISNRTALKLIFFFFSYL 228 ++ + ++II + + +F Sbjct: 179 LQDIFTEIIEQKIKFRKLFINKQIP 203 >gi|154502322|ref|ZP_02039382.1| hypothetical protein RUMGNA_00135 [Ruminococcus gnavus ATCC 29149] gi|153796947|gb|EDN79367.1| hypothetical protein RUMGNA_00135 [Ruminococcus gnavus ATCC 29149] Length = 1194 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 34/221 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + T+ ++ + R+ VSA AGSGKT +LV+R+++ LL P LL +T T+A Sbjct: 3 VQWTEDQKKVIELRNRNILVSAAAGSGKTAVLVERIIQRLLDERDPLDVDRLLIVTFTEA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ + I P + + L+ + ++ Sbjct: 63 AAAEMKERIRD---------------AIENALEDTPGNVHLQRQATLIHSA-------RI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+FC +++++ N+ F IA+E + K L ++ + L S + E + Sbjct: 101 TTIHSFCLSVIREHFHAINLDPGFRIAEEGELKLLRQDVLEEMLESCYDEGTEAFLEFAE 160 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 + +D +E +I L+L + SY K + Sbjct: 161 KFSTGRSDRQLEEVI---------LQLYEYAGSYPQPEKWL 192 >gi|253580235|ref|ZP_04857501.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848328|gb|EES76292.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 1269 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 93/223 (41%), Gaps = 34/223 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 + TK +Q + R+ VSA AGSGKT +LV+R+L + HP LL +T T+ Sbjct: 2 GVQWTKEQQEVIRLRDRNILVSAAAGSGKTAVLVERILSKITDKEHPVDIDRLLIMTFTR 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA EM R+ SA I K + P+ + + LL T + Sbjct: 62 AAAGEMKERI---------------SAAIEKALCEDPDNEHLQRQTTLLHTA-------Q 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TI FC I++ + + + ADE + K L + K+ L +E+ +K Sbjct: 100 ITTIDGFCAYIIRNYFHLIGLDPGYRTADEGELKLLRGDVVKALLEEYYAKKDEKFQKFV 159 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 +DE++ LI KL S + ++ + Sbjct: 160 ECFATGKSDENLGNLIQ---------KLYEMAMSNPFPQEWLS 193 >gi|160881547|ref|YP_001560515.1| recombination helicase AddA [Clostridium phytofermentans ISDg] gi|251764520|sp|A9KTE6|ADDA_CLOPH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|160430213|gb|ABX43776.1| recombination helicase AddA [Clostridium phytofermentans ISDg] Length = 1377 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 34/222 (15%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74 S T +Q + + VSA AGSGKT +LV+R++ + + P LL +T TKAA Sbjct: 5 SWTPGQQKVIDTRDCNLLVSAAAGSGKTAVLVERIINRITSENSPINIDQLLIVTFTKAA 64 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ A I K ++P+ + K LL + ++ Sbjct: 65 AGEMRERI---------------GAAIEKKVLEQPDNVHLQKQLTLLYSA-------QIT 102 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TI +FC ++++ ++ F IA+E + L K LA+++ + EE + F E Sbjct: 103 TIDSFCLSVIRNHFHTIDLDPSFRIAEEAELMLL----KSDVLATLLEEKYEEGAEDFLE 158 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +E + + I + I LKL F SY + + +E+ Sbjct: 159 FVECYSASKSDEPIENFI-----LKLYQFSQSYPYPHEWLEE 195 >gi|331268546|ref|YP_004395038.1| ATP-dependent nuclease subunit A [Clostridium botulinum BKT015925] gi|329125096|gb|AEB75041.1| ATP-dependent nuclease subunit A [Clostridium botulinum BKT015925] Length = 1244 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 53/233 (22%), Positives = 92/233 (39%), Gaps = 32/233 (13%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCL 68 + + TK +Q + VSA AGSGKT +LV+R+++++ +P LL + Sbjct: 10 RVLSEVKWTKEQQQAIDIHGCNLLVSAAAGSGKTAVLVERIIKMITDLKNPVDIDRLLVV 69 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AAA+EM R+ + I K K P + + LL Sbjct: 70 TFTNAAASEMKERIAKAIG---------------KELTKHPKSRQLQRQLTLL------- 107 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + TIH+FC ++ ++ F I DE ++ L E + + N Sbjct: 108 NRASITTIHSFCLETIKNNFHYIDLDPSFRIGDETETILLKGEIIEEIFDELYQPEN--C 165 Query: 189 KKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 + F +++E + + + ++I L L F S +K +E Sbjct: 166 SEDFLKLVEFYSSNRDDLALQNMI-----LNLYNFVMSSPNPKKQLESMAEDF 213 >gi|297543796|ref|YP_003676098.1| recombination helicase AddA [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841571|gb|ADH60087.1| recombination helicase AddA [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 1230 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 96/227 (42%), Gaps = 33/227 (14%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74 + T +QL + + V+A AGSGKT +LV+R++RL+ +P LL +T T AA Sbjct: 4 TWTHEQQLAINTRGNNLLVAAGAGSGKTAVLVERIIRLITDKENPVDIDRLLVVTFTNAA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM R+ + + + + P +S LL + Sbjct: 64 ASEMRERIADALIS---------------KLDQNPEDRRLSNQLTLL-------NKATIT 101 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TIH+FC +++ ++ +F I D+ ++ L EA + + + + F Sbjct: 102 TIHSFCLEVVRNNFFLVDLDPNFRIGDDTETLLLKLEAAEELFEELYQKED---NQDFLM 158 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 ++E + + D++ L+L F S W K + + L + Sbjct: 159 LIESYGGTRDDKPLVDVL-----LRLYNFVKSLPWPEKWLMEMLLNF 200 >gi|331082717|ref|ZP_08331840.1| recombination helicase AddA [Lachnospiraceae bacterium 6_1_63FAA] gi|330400336|gb|EGG79978.1| recombination helicase AddA [Lachnospiraceae bacterium 6_1_63FAA] Length = 1224 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 88/222 (39%), Gaps = 34/222 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 +S T+ +Q + + VSA AGSGKT +LV+R+++ + +P LL +T T+ Sbjct: 2 GVSWTEEQQKVIDTRNCNILVSAAAGSGKTAVLVERIIQRITDKNNPVDIDELLIVTFTR 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA EM R+ + I K P + + L+ L Sbjct: 62 AAAGEMKERIRQ---------------AIEKKLEANPEDEHLQRQSTLVHHAL------- 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TI +FC I++ + ++ F + DE + + L + + L + + Sbjct: 100 ITTIDSFCSYIVKNYFHLIDLDPSFRMGDEGEMRLLQADVADAVLEEAYTEEDPSFLAFS 159 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 D+ I +I +KL F SY + + + Sbjct: 160 DGFAGGKTDKKIPEMI---------IKLYSFSMSYPYPEEWL 192 >gi|253682207|ref|ZP_04863004.1| recombination helicase AddA [Clostridium botulinum D str. 1873] gi|253561919|gb|EES91371.1| recombination helicase AddA [Clostridium botulinum D str. 1873] Length = 1232 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 92/228 (40%), Gaps = 32/228 (14%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + TK +Q + VSA AGSGKT +LV+R+++++ +P LL +T T A Sbjct: 4 VKWTKEQQQAIDIHGCNLLVSAAAGSGKTAVLVERIIKMITDLKNPVDIDRLLVVTFTNA 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA+EM R+ + I K K P + + LL + Sbjct: 64 AASEMKERIAKAIG---------------KELTKHPRSRQLQRQLTLL-------NRASI 101 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+FC ++ ++ F I DE ++ L + + + N + F Sbjct: 102 TTIHSFCLETIKNNFHYIDLDPSFRIGDETETILLKSQIIEEIFDELYEPEN--CSEDFL 159 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +++E + ++ + +++ L L F S +K +E Sbjct: 160 KLVEFYSSNKDDSALQNMV-----LNLYNFVMSSPNPKKQLESMAEDF 202 >gi|153855193|ref|ZP_01996377.1| hypothetical protein DORLON_02391 [Dorea longicatena DSM 13814] gi|149752362|gb|EDM62293.1| hypothetical protein DORLON_02391 [Dorea longicatena DSM 13814] Length = 1221 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 34/224 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 + T+ ++ + R+ VSA AGSGKT +LV+R++ +L + P LL +T T+ Sbjct: 2 GVKWTEEQEKVIRLRNRNILVSAAAGSGKTAVLVERIITMLTKDDPPMDVDRLLIVTFTE 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA+EM R+ I K + P+ + + L+ + Sbjct: 62 AAASEMKERIR---------------LAIEKKLMEYPDNEHLKQQATLIHNA-------Q 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TIH+FC ++++ +I F I +E + K L + + L + ++ Sbjct: 100 ITTIHSFCLSVIRDHFHAIDIDPGFRIGEEGELKLLRHDVLEDMLEEKYQEGSKRFLDFT 159 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ND+ IE LI LK+ F SY ++ Sbjct: 160 AAYSTGRNDKKIEDLI---------LKIYEFSRSYPDSEAWLDS 194 >gi|258543653|ref|YP_003189086.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01] gi|256634731|dbj|BAI00707.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01] gi|256637787|dbj|BAI03756.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-03] gi|256640841|dbj|BAI06803.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-07] gi|256643896|dbj|BAI09851.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-22] gi|256646951|dbj|BAI12899.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-26] gi|256650004|dbj|BAI15945.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-32] gi|256652994|dbj|BAI18928.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656048|dbj|BAI21975.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-12] Length = 1190 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 69/173 (39%), Positives = 108/173 (62%), Gaps = 11/173 (6%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL----------LLANAHPSTLL 66 ISQ ++Q LASDP+ S +VSA+AGSGKT +L+ R+LRL +L + P+ +L Sbjct: 13 ISQANAQQALASDPSASVFVSASAGSGKTKLLIDRLLRLMLPRLAEDGSILPGSSPARIL 72 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 CLT TKAAAAEMS R+ + + W LSDE L E+ + + +AR L +L+ Sbjct: 73 CLTFTKAAAAEMSIRLQKRLGRWVTLSDEELDKELAGL-YVPCTEETRRRARALFAEVLD 131 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 PGG+++ TIHAFC++++++FPLEA++ HF + +E + ++ ++ L Sbjct: 132 LPGGMRIGTIHAFCQSLLRRFPLEASMNPHFTVMEETDASLALQACVEAILGQ 184 >gi|149182415|ref|ZP_01860891.1| AddA [Bacillus sp. SG-1] gi|148849878|gb|EDL64052.1| AddA [Bacillus sp. SG-1] Length = 1258 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 33/220 (15%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAA 74 + T + R V+A AGSGKT +LV+R+++ +L + LL +T T A+ Sbjct: 13 TWTDDQWKAIWAKGRDILVAAAAGSGKTAVLVERIIQKILDKEDGINVDELLVVTFTNAS 72 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM HR+ E + K PN + K LL + Sbjct: 73 AAEMRHRIGEAL---------------EKAISADPNSYHLRKQLSLL-------NRASIS 110 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+H+FC +++++ +I F I D+ + + L +E + + +FY+ Sbjct: 111 TLHSFCLEVIRKYYYLIDIDPGFRILDDTEGELLRDEVLDELFEEEYGKEDND---SFYK 167 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +++ ++ + + D+I KL F S+ + + Sbjct: 168 LVDTFTNDRSDAALQDMIR-----KLYDFSRSHPNPDEWL 202 >gi|182417613|ref|ZP_02948934.1| recombination helicase AddA [Clostridium butyricum 5521] gi|237669499|ref|ZP_04529479.1| ATP-dependent nuclease subunit A [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378532|gb|EDT76062.1| recombination helicase AddA [Clostridium butyricum 5521] gi|237654943|gb|EEP52503.1| ATP-dependent nuclease subunit A [Clostridium butyricum E4 str. BoNT E BL5262] Length = 1252 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 93/226 (41%), Gaps = 34/226 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + + V+A AGSGKT +LV+R++R++ +P LL +T T AAA Sbjct: 6 WTDEQLSAIKTRNCNLLVAAAAGSGKTAVLVERIIRIITNKDNPVDIDKLLVVTFTNAAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ +A I+K K+P ++ K LL + T Sbjct: 66 AEMRERI---------------AAAISKALDKEPTSKNLQKQLTLL-------NRANITT 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++ + ++ F I D+ + + +E ++ + E Sbjct: 104 MHSFCLDVIKNNFHKIDLDPSFRIGDQTEGILIKDEVIETLFEEKYDQEDTEFTSLVEAF 163 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 ND++++ LI ++ F S W ++++ + Sbjct: 164 STYKNDDNLKELIINM---------YNFIMSGPWPENWLKENAEAF 200 >gi|323692610|ref|ZP_08106842.1| hypothetical protein HMPREF9475_01705 [Clostridium symbiosum WAL-14673] gi|323503307|gb|EGB19137.1| hypothetical protein HMPREF9475_01705 [Clostridium symbiosum WAL-14673] Length = 1222 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 57/221 (25%), Positives = 94/221 (42%), Gaps = 33/221 (14%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAA 74 ++ TK ++ + R+ VSA AGSGKT +LV+R++R++ + LL +T TKAA Sbjct: 3 VNWTKEQKAVIESRNRNLLVSAAAGSGKTAVLVERIIRMITGDSPIDIDRLLVMTFTKAA 62 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM R+ A I K + P + + T ++ Sbjct: 63 AAEMRERI---------------QAAIEKKLEEDPGNEHLQQQAV-------TVQFAQIT 100 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TI +FC I+++ +I F + DE + L E L +M D+ +AF Sbjct: 101 TIDSFCLHILREHFDCIDIDPAFRVGDEGEMLLLRAE----VLQELMEDSYANGGEAFER 156 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 ++ + + I D I +++ F S W K E Sbjct: 157 FVDTYSIGKADGGIEDYI-----MQVFSFAQSNPWPDKWFE 192 >gi|114799862|ref|YP_760584.1| double-strand break repair helicase AddA [Hyphomonas neptunium ATCC 15444] gi|114740036|gb|ABI78161.1| double-strand break repair helicase AddA [Hyphomonas neptunium ATCC 15444] Length = 1168 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 70/188 (37%), Positives = 106/188 (56%), Gaps = 9/188 (4%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLA------NAHPSTLLCLTHTKAAAAEMSHRV 82 +P SA+ +ANAGSGKT +L+ RV RLLL A P ++LC+T+T+AAA EM R+ Sbjct: 23 NPDVSAYATANAGSGKTKVLIDRVARLLLRREDGRPGADPDSILCITYTRAAANEMLTRL 82 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNK---SDMSKARHLLITILETPGGLKVQTIHAF 139 + W+ D+ L ++K++G+ P K D+ AR L LETPGGL+++TIHAF Sbjct: 83 FRTLGDWAVKEDDKLREALSKLEGRAPEKYSREDLRDARRLFARALETPGGLRIETIHAF 142 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C I+++FPLEA + FA ++ +K L + AK + +EL E + Sbjct: 143 CARILRRFPLEAGVVPGFAEMEDRDAKALWQAAKDRAILEAAQSAPDELALIAREAMNEG 202 Query: 200 NDEDIETL 207 ++ L Sbjct: 203 AASALDAL 210 >gi|295091233|emb|CBK77340.1| recombination helicase AddA, Firmicutes type [Clostridium cf. saccharolyticum K10] Length = 1273 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 34/224 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 ++ TK ++ + R+ VSA AGSGKT +LV+R++R++ P LL +T TK Sbjct: 2 GVNWTKEQRQVIESRDRNLLVSAAAGSGKTAVLVERIIRMITDGERPGDIERLLVMTFTK 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA+EM R+ + I K + P + + ++ + Sbjct: 62 AAASEMRERIHD---------------AIEKKLKEDPGNEHLQQQAIMVQ-------YAQ 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TI +FC I+++ +I F + DE + L + + L ++ + Sbjct: 100 ITTIDSFCLHILREHFDCLDIDPAFRVGDEGEMLLLRGDVMEELLEDWYGRHDPAFENFV 159 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 D I+ I ++ F S W ++ I++ Sbjct: 160 ETYASGKADGGIDDYIY---------QVYSFSQSNPWPKEWIDE 194 >gi|283795557|ref|ZP_06344710.1| ATP-dependent nuclease subunit A [Clostridium sp. M62/1] gi|291077226|gb|EFE14590.1| ATP-dependent nuclease subunit A [Clostridium sp. M62/1] Length = 1273 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 34/224 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 ++ TK ++ + R+ VSA AGSGKT +LV+R++R++ P LL +T TK Sbjct: 2 GVNWTKEQRQVIESRDRNLLVSAAAGSGKTAVLVERIIRMITDGERPGDIERLLVMTFTK 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA+EM R+ + I K + P + + ++ + Sbjct: 62 AAASEMRERIHD---------------AIEKKLKEDPGNEHLQQQAIMVQ-------YAQ 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TI +FC I+++ +I F + DE + L + + L ++ + Sbjct: 100 ITTIDSFCLHILREHFDCLDIDPAFRVGDEGEMLLLRGDVMEELLEDWYGRHDPAFENFV 159 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 D I+ I ++ F S W ++ I++ Sbjct: 160 ETYASGKADGGIDDYIY---------QVYSFSQSNPWPKEWIDE 194 >gi|295109449|emb|CBL23402.1| recombination helicase AddA, Firmicutes type [Ruminococcus obeum A2-162] Length = 1241 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 93/221 (42%), Gaps = 34/221 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T+ +Q + S R+ VSA AGSGKT +LV+R+L + P LL +T T+AAA Sbjct: 5 WTEEQQKVISLRDRNILVSAAAGSGKTAVLVERILSKICDPKKPVDIDRLLIMTFTRAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ SA I + P+ + + L+ ++ T Sbjct: 65 GEMKERI---------------SAAIEQKLYDNPDNEHLQRQTSLIHNA-------QITT 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I FC I++ + ++ + A+E + K L E+ K L +E+ F + Sbjct: 103 IDGFCAYIIRNYFHMIDLDPGYRTAEEGELKLLREDVMKEVLEEAYAQKDEK----FLNL 158 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 E + + I D+I KL S+ + + IE+ Sbjct: 159 AECYANGKTDDEIRDMI-----YKLYDASMSHPFPEEWIEE 194 >gi|154485117|ref|ZP_02027565.1| hypothetical protein EUBVEN_02840 [Eubacterium ventriosum ATCC 27560] gi|149734070|gb|EDM50189.1| hypothetical protein EUBVEN_02840 [Eubacterium ventriosum ATCC 27560] Length = 1220 Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats. Identities = 54/225 (24%), Positives = 103/225 (45%), Gaps = 34/225 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + T +Q + R+ VSA AGSGKT +LV+R+++++ +P + LL +T T+A Sbjct: 1 MKWTDKQQKVIDTRDRNILVSAAAGSGKTAVLVERIIKMITDEENPTDVNQLLVVTFTRA 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA+EM R+ E + K++ PN ++ K L+ + Sbjct: 61 AASEMKERIREAL---------------EKMEEDNPNDLNVQKQLSLIHNA-------NI 98 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TI +FC +++ + ++ +F IADE + + L + + L L ++E F Sbjct: 99 STIDSFCARVVKDNFDKIDLDPNFRIADENEIEMLQSDIVEEMLEEYYLAADDE----FM 154 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 E+ E + I ++I L++ F + K I++++ Sbjct: 155 ELAEKYSTGKTSDSIGELI-----LRMYKFASGQIEPEKWIKEAI 194 >gi|83749759|ref|ZP_00946735.1| ATP-dependent nuclease subunit A [Ralstonia solanacearum UW551] gi|207743470|ref|YP_002259862.1| homologous recombinational repair protein, atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) [Ralstonia solanacearum IPO1609] gi|83723579|gb|EAP70781.1| ATP-dependent nuclease subunit A [Ralstonia solanacearum UW551] gi|206594867|emb|CAQ61794.1| homologous recombinational repair protein, atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) [Ralstonia solanacearum IPO1609] Length = 1177 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 57/195 (29%), Positives = 100/195 (51%), Gaps = 3/195 (1%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 A DP RS V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM R+L+ Sbjct: 20 RAACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLD 79 Query: 85 IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 I+ + D E+ + ++ ++ AR L +LE+P + + T H + + Sbjct: 80 ILAQLAGADDAAAVRELVARTVDERDAPGLVATARGLYARVLESPSRMAIDTFHGWFGGL 139 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ PL + + ++ E + +L EA ++ + + EL+ A+ ++++ D Sbjct: 140 LRGAPLSSGVPQGASL--REDAGRLRREAWAPFWRRLLAEEHAELRAAYDTLVDLVGDFQ 197 Query: 204 IETLISDIISNRTAL 218 L+ + + R+ Sbjct: 198 AGRLLDAMFAQRSDW 212 >gi|300704439|ref|YP_003746042.1| helicase, uvrd subfamily [Ralstonia solanacearum CFBP2957] gi|299072103|emb|CBJ43435.1| putative helicase, uvrD subfamily [Ralstonia solanacearum CFBP2957] Length = 1177 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 56/195 (28%), Positives = 101/195 (51%), Gaps = 3/195 (1%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 A DP RS V A AGSGKT +LV R+LRLLLA A P+ +L +T T+ AA EM R+L+ Sbjct: 20 RAACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPADILAITFTRKAAEEMRQRLLD 79 Query: 85 IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 I+ + D + E+ + ++ ++ AR L +LE+P + + T H + + Sbjct: 80 ILAQLAGADDAAVVRELVARTVDERDAPGLVAAARGLYARVLESPSRMAIDTFHGWFGGL 139 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ PL + + ++ E + +L EA ++ + + EL+ A+ ++++ D Sbjct: 140 LRGAPLSSGVPQGASL--REDAGRLRREAWAPFWRRLLAEEHAELRAAYDTLVDLVGDFQ 197 Query: 204 IETLISDIISNRTAL 218 L+ + + R+ Sbjct: 198 AGRLLDAMFAQRSDW 212 >gi|207723138|ref|YP_002253537.1| homologous recombinational repair protein, atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) [Ralstonia solanacearum MolK2] gi|206588331|emb|CAQ35294.1| homologous recombinational repair protein, atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) [Ralstonia solanacearum MolK2] Length = 1177 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 57/195 (29%), Positives = 100/195 (51%), Gaps = 3/195 (1%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 A DP RS V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM R+L+ Sbjct: 20 RAACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLD 79 Query: 85 IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 I+ + D E+ + ++ ++ AR L +LE+P + + T H + + Sbjct: 80 ILAQLAGADDAAAVRELVARTVDERDAPGLVATARGLYARVLESPSRMAIDTFHGWFGGL 139 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ PL + + ++ E + +L EA ++ + + EL+ A+ ++++ D Sbjct: 140 LRGAPLSSGVPQGASL--REDAGRLRREAWAPFWRRLLAEEHAELRAAYDTLVDLVGDFQ 197 Query: 204 IETLISDIISNRTAL 218 L+ + + R+ Sbjct: 198 AGRLLDAMFAQRSDW 212 >gi|300856480|ref|YP_003781464.1| putative ATP-dependent exonuclease [Clostridium ljungdahlii DSM 13528] gi|300436595|gb|ADK16362.1| predicted ATP-dependent exonuclease [Clostridium ljungdahlii DSM 13528] Length = 1240 Score = 178 bits (451), Expect = 7e-43, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 35/227 (15%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAA 74 + T+S++ P + VSA AG+GKT +LV+R+++ + + LL +T T AA Sbjct: 12 NWTESQREAIFTPKCNLLVSAGAGTGKTAVLVERIIQEITSIDEDVDIDKLLVVTFTNAA 71 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM R+ E I+ K+ ++ K LL + Sbjct: 72 ASEMKERIAEAIS---------------KLLESNYGSKNLQKQLTLL-------NQANII 109 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TIHAFC +++ ++ +F I D ++ L + L + + + F + Sbjct: 110 TIHAFCLKVIKSNFHLIDLDPNFRICDSTEAVLLKQ----DVLEELFDEKYDIENTEFLK 165 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +++ ++ L ++S L F S W K + +++ + Sbjct: 166 LVDGFKSKNDIKLKDMVLS------LYEFSKSNPWPEKWLRQAVENF 206 >gi|197302903|ref|ZP_03167954.1| hypothetical protein RUMLAC_01631 [Ruminococcus lactaris ATCC 29176] gi|197297984|gb|EDY32533.1| hypothetical protein RUMLAC_01631 [Ruminococcus lactaris ATCC 29176] Length = 1256 Score = 178 bits (451), Expect = 8e-43, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 34/221 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + TK ++ + R+ VSA AGSGKT +LV+R++ + +P LL +T+T+A Sbjct: 3 VKWTKEQRQVIDLRDRNILVSAAAGSGKTAVLVERIISRITDEKNPVDVDKLLVVTYTEA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ +A I K + P ++ + L+ + + + Sbjct: 63 AAAEMKERI---------------AAAIEKKLEEFPGNLNLEQQASLIHSAM-------I 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T+H FC ++++ I F + +E + + L ++ L + EE ++ Sbjct: 101 TTVHKFCLSVIRDHFHVIGIDPSFRVGEEGELRLLKQDVLDEMLEEHYAKDEEEFREFVE 160 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 + D+ IE LI L+L + SY R+ + Sbjct: 161 KYGTGRTDKKIEELI---------LQLYEYSRSYPDPRQWL 192 >gi|266620646|ref|ZP_06113581.1| ATP-dependent nuclease subunit A [Clostridium hathewayi DSM 13479] gi|288867733|gb|EFD00032.1| ATP-dependent nuclease subunit A [Clostridium hathewayi DSM 13479] Length = 1244 Score = 177 bits (450), Expect = 8e-43, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 89/221 (40%), Gaps = 34/221 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 I+ TK ++ + R+ VSA AGSGKT +LV+R++R++ +P LL +T TKA Sbjct: 3 INWTKEQKAVIESRNRNLLVSAAAGSGKTAVLVERIIRMITEGKNPLDIDQLLVMTFTKA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RVL + + + P S + ++ ++ Sbjct: 63 AADEMRERVL---------------LAVDEKLKEDPENSHLQMQAAMIP-------YARI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TI +FC I+++ +I F + DE + L + L +EE + Sbjct: 101 TTIDSFCLGIIREHYNRLDIDPAFRVGDEGELLLLRGSVMEQMLEDYYEAGDEEFSRFVE 160 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +D IE I + + F S W + + Sbjct: 161 TYATGKSDRGIEDHI---------MAVYNFSGSNPWPEEWL 192 >gi|126698625|ref|YP_001087522.1| ATP-dependent nuclease subunit A [Clostridium difficile 630] gi|123174482|sp|Q18AN9|ADDA_CLOD6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|115250062|emb|CAJ67882.1| ATP-dependent nuclease subunit A (ATP-dependent helicase addA) [Clostridium difficile] Length = 1275 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 34/231 (14%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 + TK + + + V+A AGSGKT +LV+R+++++ + +P LL +T Sbjct: 1 MSSPKWTKEQLEVIESRECNLLVAAAAGSGKTAVLVERIIQMITSRENPIDIDKLLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAA+EM R+ + I K + P + LL Sbjct: 61 TNAAASEMRERIGDAIG---------------KALDENPENKHLQNQLVLL-------NK 98 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + TIH+FC +++ N+ +F I D+ + L +EA + + + +E Sbjct: 99 SSITTIHSFCLDVIKSNFHRINLDPNFRIGDQTECAILKQEAIEEVFEDLYEERDEGFLN 158 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 E D++++ +I L + F + +K + S Sbjct: 159 LVESYAERGGDKEVQDII---------LGIYSFAMASPEPKKWLIDSAERF 200 >gi|255100077|ref|ZP_05329054.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-63q42] Length = 1275 Score = 177 bits (450), Expect = 9e-43, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 34/231 (14%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 + TK + + + V+A AGSGKT +LV+R+++++ + +P LL +T Sbjct: 1 MSSPKWTKEQLEVIESRECNLLVAAAAGSGKTAVLVERIIQMITSRENPIDIDKLLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAA+EM R+ + I K + P + LL Sbjct: 61 TNAAASEMRERIGDAIG---------------KALDENPENKHLQNQLVLL-------NK 98 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + TIH+FC +++ N+ +F I D+ + L +EA + + + +E Sbjct: 99 SSITTIHSFCLDVIKSNFHRINLDPNFRIGDQTECAILKQEAIEEVFEDLYEERDEGFLN 158 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 E D++++ +I L + F + +K + S Sbjct: 159 LVESYAERGGDKEVQDII---------LGIYSFAMASPEPKKWLIDSAERF 200 >gi|117924280|ref|YP_864897.1| DNA helicase/exodeoxyribonuclease V, subunit A [Magnetococcus sp. MC-1] gi|117608036|gb|ABK43491.1| DNA helicase/exodeoxyribonuclease V, subunit A [Magnetococcus sp. MC-1] Length = 1155 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 60/224 (26%), Positives = 109/224 (48%), Gaps = 11/224 (4%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 + A DP S V A AGSGKT +L QR LRLL P +L +T T+ AAAEM R Sbjct: 7 QARARALDPEGSFIVQAPAGSGKTGLLTQRFLRLLAVVDKPEQILAITFTRKAAAEMRGR 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 ++E + + ++ E + Q + + +++ +L P L V TI A Sbjct: 67 IVEALAEAAR---GVVPVEPFERQRYELARGALAQDHAHGWQLLHNPQRLAVMTIDALSS 123 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELKKAFYEIL--EI 198 + +Q P+ + F ADE + L ++A +S L + M + + +A + +L Sbjct: 124 RLTRQMPVLSGFGGSFERADEPE--PLYQQAARSCLETSMQEPADSPRHQAVWRLLQHRD 181 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYL-WRRKIIEKSLWSI 241 + + +E L+ ++++ R I+ + +R+++E++LW + Sbjct: 182 YDFQRLEQLLVEMLARRDQW--IYHLQNQDGLQREVLEQALWHL 223 >gi|309782347|ref|ZP_07677073.1| UvrD/REP helicase [Ralstonia sp. 5_7_47FAA] gi|308918883|gb|EFP64554.1| UvrD/REP helicase [Ralstonia sp. 5_7_47FAA] Length = 1173 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 58/215 (26%), Positives = 108/215 (50%), Gaps = 4/215 (1%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 A DP RS V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM R+L+ Sbjct: 20 RAACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLD 79 Query: 85 IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 I+ + DE + E+ + ++ + + AR L +LE+P + + T H + ++ Sbjct: 80 ILAQLAGADDESVVRELIARTVDERDAPALIETARGLYARVLESPSRMAIDTFHGWFGSL 139 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ PL + + ++ E + +L EA ++ +++ +L+ A+ + ++ D Sbjct: 140 LRGAPLSSGVQQGASL--REDAGRLRREAWAPFWRGLLAEDHADLRAAYESLADLVGDFQ 197 Query: 204 IETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 L+ + R+ + + +++ L Sbjct: 198 AGRLLDAMFHQRSDW-WAYKTQAGGRPLDALDQLL 231 >gi|255305967|ref|ZP_05350139.1| ATP-dependent nuclease subunit A [Clostridium difficile ATCC 43255] Length = 1275 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 34/231 (14%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 + TK + + + V+A AGSGKT +LV+R+++++ + +P LL +T Sbjct: 1 MSSPKWTKEQLEVIESRECNLLVAAAAGSGKTAVLVERIIQMITSRENPIDIDKLLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAA+EM R+ + I K + P + LL Sbjct: 61 TNAAASEMRERIGDAIG---------------KALDENPENKHLQNQLVLL-------NK 98 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + TIH+FC +++ N+ +F I D+ + L +EA + + + +E Sbjct: 99 SSITTIHSFCLDVIKSNFHRINLDPNFRIGDQTECAILKQEAIEEVFEDLYEERDEGFLN 158 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 E D++++ +I L + F + +K + S Sbjct: 159 LVESYAERGGDKEVQDII---------LGIYSFAMASPEPKKWLIDSAERF 200 >gi|187928127|ref|YP_001898614.1| UvrD/REP helicase [Ralstonia pickettii 12J] gi|187725017|gb|ACD26182.1| UvrD/REP helicase [Ralstonia pickettii 12J] Length = 1173 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 57/195 (29%), Positives = 102/195 (52%), Gaps = 3/195 (1%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 A +P RS V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM R+L+ Sbjct: 20 RAACEPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLD 79 Query: 85 IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 I+ + DE + E+ + ++ + + AR L +LE+P + + T H + ++ Sbjct: 80 ILAQLAAADDEGVVRELVARTVDERDAPALIETARGLYARVLESPSRMAIDTFHGWFGSL 139 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ PL + + ++ E + +L EA ++ +++ EL+ A+ + ++ D Sbjct: 140 LRGAPLSSGVQQGASL--REDAGRLRREAWAPFWRGLLAEDHAELRAAYETLADLVGDFQ 197 Query: 204 IETLISDIISNRTAL 218 L+ + R+ Sbjct: 198 AGRLLDAMFHQRSDW 212 >gi|254974592|ref|ZP_05271064.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-66c26] gi|255091983|ref|ZP_05321461.1| ATP-dependent nuclease subunit A [Clostridium difficile CIP 107932] gi|255313717|ref|ZP_05355300.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-76w55] gi|255516399|ref|ZP_05384075.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-97b34] gi|255649498|ref|ZP_05396400.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-37x79] gi|260682665|ref|YP_003213950.1| ATP-dependent nuclease subunit A [Clostridium difficile CD196] gi|260686264|ref|YP_003217397.1| ATP-dependent nuclease subunit A [Clostridium difficile R20291] gi|260208828|emb|CBA61747.1| ATP-dependent nuclease subunit A [Clostridium difficile CD196] gi|260212280|emb|CBE03030.1| ATP-dependent nuclease subunit A [Clostridium difficile R20291] Length = 1275 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 34/231 (14%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 + TK + + + V+A AGSGKT +LV+R+++++ + +P LL +T Sbjct: 1 MSSPKWTKEQLEVIGSRECNLLVAAAAGSGKTAVLVERIIQMITSRENPIDIDKLLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAA+EM R+ + I K + P + LL Sbjct: 61 TNAAASEMRERIGDAIG---------------KALDENPENKHLQNQLVLL-------NK 98 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + TIH+FC +++ N+ +F I D+ + L +EA + + + +E Sbjct: 99 SSITTIHSFCLDVIKSNFHRINLDPNFRIGDQTECAILKQEAIEEVFEDLYEERDEGFLN 158 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 E D++++ +I L + F + +K + S Sbjct: 159 LVESYAERGGDKEVQDII---------LGIYSFAMASPEPKKWLIDSAERF 200 >gi|329113820|ref|ZP_08242591.1| ATP-dependent helicase/nuclease subunit A [Acetobacter pomorum DM001] gi|326696830|gb|EGE48500.1| ATP-dependent helicase/nuclease subunit A [Acetobacter pomorum DM001] Length = 1190 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 67/173 (38%), Positives = 105/173 (60%), Gaps = 11/173 (6%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL----------LLANAHPSTLL 66 ISQ ++Q LASDP+ S +VSA+AGSGKT +L+ R+LRL + + P+ +L Sbjct: 13 ISQANAQQALASDPSASVFVSASAGSGKTKLLIDRLLRLMLPRLAEDGSIQPGSSPARIL 72 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 CLT TKAAAAEMS R+ + + W L DE L E+ + +AR L +L+ Sbjct: 73 CLTFTKAAAAEMSIRLQKRLGRWVTLLDEELDKELAGL-YVPCTDETRRRARALFAEVLD 131 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 PGG+++ TIHAFC++++++FPLEA++ HF + +E + ++ ++ L Sbjct: 132 LPGGMRIGTIHAFCQSLLRRFPLEASMNPHFTVMEETDASLALQSCVEAILGQ 184 >gi|300691831|ref|YP_003752826.1| helicase, uvrD subfamily [Ralstonia solanacearum PSI07] gi|299078891|emb|CBJ51552.1| putative helicase, uvrD subfamily [Ralstonia solanacearum PSI07] Length = 1178 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 57/195 (29%), Positives = 100/195 (51%), Gaps = 3/195 (1%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 A DP RS V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM R+L+ Sbjct: 20 RAACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLD 79 Query: 85 IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 I+ + D E+ + ++ ++ AR L +LE+P + + T H + + Sbjct: 80 ILAQLAGADDAAAVRELVARTVDEREALGLVAVARGLYARVLESPSRMAIDTFHGWFGGL 139 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ PL + + ++ E + +L EA ++ + + EL+ A+ ++++ D Sbjct: 140 LRGAPLSSGVPQGASL--REDAGRLRREAWAPFWRRLLAEEHAELRAAYDALVDLVGDFQ 197 Query: 204 IETLISDIISNRTAL 218 L+ + + R+ Sbjct: 198 AGRLLDAMFAQRSDW 212 >gi|302385434|ref|YP_003821256.1| recombination helicase AddA [Clostridium saccharolyticum WM1] gi|302196062|gb|ADL03633.1| recombination helicase AddA [Clostridium saccharolyticum WM1] Length = 1229 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 34/222 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 I T+ ++ + R+ VSA AGSGKT +LV+R++R++ P LL +T TKA Sbjct: 3 ICWTEEQKAVIESRNRNLLVSAAAGSGKTAVLVERIIRMITEGESPLRIDQLLVMTFTKA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RVL+ + + + P+ + + ++ ++ Sbjct: 63 AADEMRERVLKAV---------------DEKLVENPDSAHLQMQAAMIP-------YAQI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TI +FC +++ + +I F + DE + L + K L + +K Sbjct: 101 TTIDSFCLGLIRDHYNKLDIDPAFRVGDEGELLLLRADVMKEMLEEHYEKADPLFEKFVE 160 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 +D+ IE I +++ F S W + ++ Sbjct: 161 TYATGKSDKGIEDYI---------MQVYTFSQSNPWPAEWLD 193 >gi|260589313|ref|ZP_05855226.1| ATP-dependent nuclease subunit A [Blautia hansenii DSM 20583] gi|260540394|gb|EEX20963.1| ATP-dependent nuclease subunit A [Blautia hansenii DSM 20583] Length = 1223 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 87/222 (39%), Gaps = 34/222 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 +S T+ +Q + + VSA AGSGKT +LV+R+++ + +P LL +T T+ Sbjct: 2 GVSWTEEQQKVIDTRNCNILVSAAAGSGKTAVLVERIIQRITDKNNPVDIDELLIVTFTR 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA EM R+ + I K P + + L+ L Sbjct: 62 AAAGEMKERIRQ---------------AIEKKLEANPEDEHLQRQSTLVHHAL------- 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TI +FC I++ + ++ F + DE + + L + + L + Sbjct: 100 ITTIDSFCSYIVKNYFHLIDLDPSFRMGDEGEMRLLQADVADAVLEEAYTEEAPSFLAFS 159 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 D+ I +I +KL F SY + + + Sbjct: 160 DGFAGGKTDKKIPEMI---------IKLYSFSMSYPYPEEWL 192 >gi|302670100|ref|YP_003830060.1| ATP-dependent nuclease subunit A AddA [Butyrivibrio proteoclasticus B316] gi|302394573|gb|ADL33478.1| ATP-dependent nuclease subunit A AddA [Butyrivibrio proteoclasticus B316] Length = 1317 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 27/220 (12%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + TK +Q + + VSA AGSGKT +LV+R++++++ LL +T TKAAAA Sbjct: 3 VEFTKEQQAVIDARDCNILVSAAAGSGKTAVLVERIIQMIMGGVDIDHLLVVTFTKAAAA 62 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 +M ++ + I ++P+ + + L+ ++ TI Sbjct: 63 QMKEKI---------------TIAIQNKLVEEPDNKHLQRQETLIHNA-------QITTI 100 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 +FC+ +++ I F + D+ + + L E+ + L + F + Sbjct: 101 DSFCQYVLRNNFNVIGIDPSFRVGDDGELRLLKEDVMQDMLEEEYAKCKDGENSDFLFCM 160 Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 E + + + + IS +L F S W I + Sbjct: 161 EYFSTGSSDKKVEEYIS-----ELYKFAMSMPWPEDWIRE 195 >gi|241662730|ref|YP_002981090.1| UvrD/REP helicase [Ralstonia pickettii 12D] gi|240864757|gb|ACS62418.1| UvrD/REP helicase [Ralstonia pickettii 12D] Length = 1173 Score = 176 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 57/195 (29%), Positives = 102/195 (52%), Gaps = 3/195 (1%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 A DP RS V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM R+L+ Sbjct: 20 RAACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLD 79 Query: 85 IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 I+ + DE + E+ + ++ + + AR L +LE+P + + T H + ++ Sbjct: 80 ILAQLAGADDEGVVRELIARTVDERDAPALIETARGLYARVLESPSRMAIDTFHGWFGSL 139 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ PL + + ++ E + +L EA ++ +++ +L+ A+ + ++ D Sbjct: 140 LRGAPLSSGVQQGASL--REDAGRLRREAWAPFWRGLLAEDHADLRAAYESLADLVGDFQ 197 Query: 204 IETLISDIISNRTAL 218 L+ + R+ Sbjct: 198 AGRLLDAMFHQRSDW 212 >gi|150014906|ref|YP_001307160.1| recombination helicase AddA [Clostridium beijerinckii NCIMB 8052] gi|251764509|sp|A6LPC4|ADDA_CLOB8 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|149901371|gb|ABR32204.1| Recombination helicase AddA [Clostridium beijerinckii NCIMB 8052] Length = 1245 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 85/226 (37%), Gaps = 34/226 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + + V+A AGSGKT +LV+R++R++ +P LL +T T AAA Sbjct: 6 WTDEQLSAIETRNCNLLVAAAAGSGKTAVLVERIIRIITNEENPVDIDKLLVVTFTNAAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + I+ K P ++ + LL + T Sbjct: 66 AEMRERIADAIS---------------KELENNPRSKNLQRQLTLL-------NRANITT 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++ ++ F I D+ + + E + + + Sbjct: 104 MHSFCLDVIKNNYHRIDLDPSFRIGDQTEGILIKSEVIEELFEDKYEEEDIGFTNLVEIF 163 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 ND +++ L+ D L F S W K + S + Sbjct: 164 SSYKNDNNLKNLVLD---------LYNFTMSGPWPEKWLINSAEAF 200 >gi|153812830|ref|ZP_01965498.1| hypothetical protein RUMOBE_03237 [Ruminococcus obeum ATCC 29174] gi|149831042|gb|EDM86131.1| hypothetical protein RUMOBE_03237 [Ruminococcus obeum ATCC 29174] Length = 1233 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 34/226 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 ++ T+ +Q + S R+ VSA AGSGKT +LVQR+L ++ P LL +T T+ Sbjct: 2 GVTWTEEQQKVISLRDRNILVSAAAGSGKTAVLVQRILSKIMDTERPVDIDRLLIMTFTR 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA EM R+ SA I +I P+ + + L+ + Sbjct: 62 AAAGEMKERI---------------SAAIDQILYDNPDNEHLQRQASLIHNA-------Q 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TI FC I++ + ++ + A+E + K L E+ K L + E+ Sbjct: 100 ITTIDGFCAYIIRNYFHMIDLDPGYRTAEEGELKLLREDVMKEVLEAAYARKGEKFLSLV 159 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 D++I +I KL S+ + + IE+ L Sbjct: 160 ECYATGKTDDEIRDMIY---------KLYDASMSHPFPEEWIEECL 196 >gi|118444179|ref|YP_877319.1| ATP-dependent nuclease subunit A [Clostridium novyi NT] gi|251764519|sp|A0PY67|ADDA_CLONN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|118134635|gb|ABK61679.1| ATP-dependent nuclease subunit A [Clostridium novyi NT] Length = 1236 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 92/231 (39%), Gaps = 32/231 (13%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 + + TK +Q + VSA AGSGKT +LV+R+++++ +P LL +T Sbjct: 1 MGEVKWTKEQQQAIDVHGCNLLVSAAAGSGKTAVLVERIIKMITDIKNPVDIDRLLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAA+EM R+ + I K K P + + LL Sbjct: 61 TNAAASEMKERIGKAIG---------------KELTKHPKSKQLQRQLTLL-------NR 98 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + TIH+FC ++ ++ +F I DE ++ L E + + N + Sbjct: 99 ASITTIHSFCLETIRNNFHYIDLDPNFRIGDETETVLLKGEIIEGIFEDLYEPEN--CTQ 156 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 F ++E + + + +I+ L L F S +K ++ Sbjct: 157 EFLNLVEFYSSNKDDVALQNIV-----LNLYDFVMSSKNPKKQLQDMAEQF 202 >gi|254520364|ref|ZP_05132420.1| recombination helicase AddA [Clostridium sp. 7_2_43FAA] gi|226914113|gb|EEH99314.1| recombination helicase AddA [Clostridium sp. 7_2_43FAA] Length = 1251 Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 90/219 (41%), Gaps = 34/219 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T+ + + + V+A AGSGKT +LV+R++R++ +P LL +T T AAA Sbjct: 6 WTEDQLKAITTRGCNLLVAAAAGSGKTAVLVERIIRIITNENNPVDIDRLLVVTFTSAAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ +A I++ PN + + LL + T Sbjct: 66 AEMRERI---------------AAAISRSLEANPNSKVLQRQLTLL-------SRANITT 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++ + ++ F IADE ++ L E N F + Sbjct: 104 MHSFCLDVIKNYYHVIDLDPTFRIADETENTLLKLEVINDMFEDYYESEN----IGFRNL 159 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +E + + + DII L L F S W K + Sbjct: 160 IEAYSGSRDDQRLKDII-----LDLYRFSMSGPWPDKWL 193 >gi|114328674|ref|YP_745831.1| ATP-dependent nuclease subunit A [Granulibacter bethesdensis CGDNIH1] gi|114316848|gb|ABI62908.1| ATP-dependent nuclease subunit A [Granulibacter bethesdensis CGDNIH1] Length = 1159 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 65/170 (38%), Positives = 106/170 (62%), Gaps = 1/170 (0%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 S + + Q ASDP SA+VSA+AGSGKT +L R+LRL+L+ AHP + CLT Sbjct: 1 MSAAFSPRDEAERNQRDASDPIVSAFVSASAGSGKTKLLTDRLLRLMLSGAHPGRIQCLT 60 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 TKA AAEM+ R+ + AW +S + + P+ + +AR L +L+ PG Sbjct: 61 FTKAGAAEMAIRLRSRLGAWVTMS-DAALDQALAALAFTPDDAARLRARALFAQVLDLPG 119 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 G++++TIHAFC++++++FPLEA ++ HF + + + + +EA+++ LA+ Sbjct: 120 GMRIETIHAFCQSLLRRFPLEAALSPHFKMIEPAEQEVTRQEAQETMLAA 169 >gi|188589987|ref|YP_001919480.1| recombination helicase AddA [Clostridium botulinum E3 str. Alaska E43] gi|251764510|sp|B2UX57|ADDA_CLOBA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|188500268|gb|ACD53404.1| ATP-dependent nuclease subunit A [Clostridium botulinum E3 str. Alaska E43] Length = 1244 Score = 175 bits (445), Expect = 3e-42, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 34/231 (14%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 + T+ + + + V+A AGSGKT +LV+R+++++ +P LL +T Sbjct: 1 MSGTKWTEEQLSAITTRDCNLLVAAAAGSGKTAVLVERIIKIITNEENPIDIDKLLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAAEM R+ + I+K + P ++ K LL Sbjct: 61 TSAAAAEMRERI---------------ANAISKKLDETPTSKNLQKQLTLL-------NR 98 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + TIH+FC +++ + ++ F I D+ + L E + N+E K Sbjct: 99 SNIMTIHSFCLGVIKNNFHKIDLDPSFRICDQTEGILLKMEIIDELFDDKYDEENQEFIK 158 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +D ++ L+ L L F + W +K ++ + Sbjct: 159 FIEAFSSYKSDNALKELV---------LSLYNFIMAGPWPKKWLKAASEDF 200 >gi|255655059|ref|ZP_05400468.1| ATP-dependent nuclease subunit A [Clostridium difficile QCD-23m63] gi|296451046|ref|ZP_06892788.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP08] gi|296880601|ref|ZP_06904563.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP07] gi|296260053|gb|EFH06906.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP08] gi|296428555|gb|EFH14440.1| ATP-dependent nuclease subunit A [Clostridium difficile NAP07] Length = 1275 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 92/231 (39%), Gaps = 34/231 (14%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 + TK + + + V+A AGSGKT +LV+R+++++ + +P LL +T Sbjct: 1 MSSPKWTKEQLEVIESRECNLLVAAAAGSGKTAVLVERIIQMITSRENPIDIDKLLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAA+EM R+ + I K + P + LL Sbjct: 61 TNAAASEMRERIGDAIG---------------KALDENPENKHLQNQLVLL-------NK 98 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + TIH+FC +++ ++ +F I D+ + L +EA + + + +E Sbjct: 99 SSITTIHSFCLDVIKSNFHRISLDPNFRIGDQTECAILKQEAIEEVFEDLYEERDEGFLN 158 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 E D++++ +I L + F + +K + S Sbjct: 159 LVESYAERGGDKEVQDII---------LGIYSFAMASPEPKKWLIDSAERF 200 >gi|251778187|ref|ZP_04821107.1| ATP-dependent nuclease subunit A [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082502|gb|EES48392.1| ATP-dependent nuclease subunit A [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 1244 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 92/231 (39%), Gaps = 34/231 (14%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 + T+ + + + V+A AGSGKT +LV+R+++++ +P LL +T Sbjct: 1 MSGTKWTEEQLSAITTRDCNLLVAAAAGSGKTAVLVERIIKIITNEENPIDIDKLLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAAEM R+ + I+K + P ++ K LL Sbjct: 61 TSAAAAEMRERI---------------ANAISKKLDETPMSKNLQKQLTLL-------NR 98 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + TIH+FC +++ + ++ F I D+ + L E + N+E K Sbjct: 99 SNIMTIHSFCLGVIKNNFHKIDLDPSFRICDQTEGILLKMEIIDELFDDKYDEENQEFIK 158 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +D ++ L+ L L F + W +K ++ + Sbjct: 159 FIEAFSSYKSDNALKELV---------LSLYNFIMAGPWPKKWLKAASEDF 200 >gi|160872666|ref|ZP_02062798.1| UvrD/REP helicase [Rickettsiella grylli] gi|159121465|gb|EDP46803.1| UvrD/REP helicase [Rickettsiella grylli] Length = 1135 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 108/231 (46%), Gaps = 9/231 (3%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 T +L++ Q A DP S V A AGSGKT +LV+R L LL +P ++ +T T+ Sbjct: 4 TFELLADALERQR-ALDPKTSFIVQAPAGSGKTELLVRRYLTLLARVPYPEAIIAITFTR 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R++ +T + I + + + + + + + +L P L+ Sbjct: 63 KAANEMRLRIMTALTVAHEKN--ITAVQDKDKERHFLAQKALLQNKTFEWNLLSHPNRLR 120 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TI +FC+++ +Q PL+A ++ + D + L A L + D A Sbjct: 121 ILTIDSFCQSLTRQMPLQAGLSEQWTPTDNPEW--LYRLAIHEFLNPL--DEKVTWFSAL 176 Query: 193 YEIL-EISND-EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 ++L + ND + +E L+ +++ R S RK +E+SLW + Sbjct: 177 NQLLIHLDNDFQRLENLLVPLLARREQWLDYLLLQSPDDLRKTLEQSLWDL 227 >gi|294011636|ref|YP_003545096.1| putative UvrD/Rep helicase [Sphingobium japonicum UT26S] gi|292674966|dbj|BAI96484.1| putative UvrD/Rep helicase [Sphingobium japonicum UT26S] Length = 1147 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 2/191 (1%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 W+SA+AG+GKTH+L RV RLLL P +LCLT TKA AAEM+ RV + + AW + Sbjct: 28 HVWLSASAGTGKTHVLTARVFRLLLQGVRPENILCLTFTKAGAAEMADRVHDRLAAWVLM 87 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILE-TPGGLKVQTIHAFCEAIMQQFPLEA 151 + L ++ + G++ ++AR L +LE T GGL++QTIH FC+ ++ FPLEA Sbjct: 88 DEADLFHDLEAL-GEESGPEARNRARRLFAEVLESTGGGLRIQTIHGFCQQLLTAFPLEA 146 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 ++ F D+ + L + +++ L A + + E + Sbjct: 147 DLPPGFRPLDQREQATLARQTLADMAVVAQEQHDKALMDALQALSLRMGEGGAENFLLRC 206 Query: 212 ISNRTALKLIF 222 + AL+ + Sbjct: 207 AARLDALEALP 217 >gi|17545909|ref|NP_519311.1| hypothetical protein RSc1190 [Ralstonia solanacearum GMI1000] gi|17428204|emb|CAD14892.1| probable homologous recombinational repair protein, atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) [Ralstonia solanacearum GMI1000] Length = 1177 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 56/195 (28%), Positives = 100/195 (51%), Gaps = 3/195 (1%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 A DP RS V A AGSGKT +LV R+LRLLLA A PS +L +T T+ AA EM R+L+ Sbjct: 20 RAACDPLRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAITFTRKAAEEMRQRLLD 79 Query: 85 IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + D + E+ + ++ ++ AR L +LE+P + + T H + + Sbjct: 80 SLAQLAGADDAAVVRELVARTVDEREAPGLVAVARGLYGRVLESPSRMAIDTFHGWFGGL 139 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ PL + + ++ E + +L EA ++ + + EL+ A+ ++++ D Sbjct: 140 LRGAPLSSGVPQGASL--REDAGRLRREAWAPFWRRLLAEEHAELRAAYDTLVDLVGDFQ 197 Query: 204 IETLISDIISNRTAL 218 L+ + + R+ Sbjct: 198 AGRLLDAMFAQRSDW 212 >gi|168185692|ref|ZP_02620327.1| recombination helicase AddA [Clostridium botulinum C str. Eklund] gi|169296499|gb|EDS78632.1| recombination helicase AddA [Clostridium botulinum C str. Eklund] Length = 1236 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 93/231 (40%), Gaps = 32/231 (13%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 + + TK +Q + VSA AGSGKT +LV+R+++++ +P LL +T Sbjct: 1 MGEVRWTKEQQQAIDIHGCNLLVSAAAGSGKTAVLVERIIKMITDFKNPVDIDRLLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAA+EM R+ + I K K P + + LL Sbjct: 61 TNAAASEMKERIGKAIG---------------KELTKHPKSKQLQRQLTLL-------NR 98 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + T+H+FC ++ ++ +F I DE ++ L E + + N + Sbjct: 99 ASITTMHSFCLETIRNNFHYIDLDPNFRIGDETETVLLKGEIIEEIFEDLYEPEN--CTQ 156 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 F ++E + +T + +I+ L L F S ++ ++ Sbjct: 157 EFLNLVEFYSSNRDDTALQNIV-----LNLYNFVMSSKNPKEQLQDMAEEF 202 >gi|255282638|ref|ZP_05347193.1| ATP-dependent nuclease subunit A [Bryantella formatexigens DSM 14469] gi|255266931|gb|EET60136.1| ATP-dependent nuclease subunit A [Bryantella formatexigens DSM 14469] Length = 1237 Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 26/224 (11%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 + T+ ++ + VSA AGSGKT +LV+R+L +L HP LL +T T Sbjct: 2 GVKWTEDQRQVIDARGCDLLVSAAAGSGKTAVLVERILSMLTDKEHPRDIDRLLIVTFTN 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA EM R+ I KI+ + + + + L + + Sbjct: 62 AAAGEMKDRIRVAIE--------------QKIEDCRADGGEEERLLEHLQRQVSLLSNAQ 107 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TIH+FC+ +++ ++ +ADE + K L + + +N EE + Sbjct: 108 ITTIHSFCQYVIRNHFHTIDLDPGLHVADEGEQKLLQSDVMDKLVEEAYAENTEEFRYMA 167 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + +D + TAL L F S+ + + +++ Sbjct: 168 ECLAPGRDDAALAE---------TALSLYHFSRSFPFPEEWLQE 202 >gi|85708411|ref|ZP_01039477.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. NAP1] gi|85689945|gb|EAQ29948.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. NAP1] Length = 369 Score = 174 bits (442), Expect = 9e-42, Method: Composition-based stats. Identities = 63/203 (31%), Positives = 105/203 (51%), Gaps = 3/203 (1%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 QL A++P + W+SA+AG+GKT +L RVLRLLL PS +LCLT TKA AAE Sbjct: 7 PLADNQLGAANPRDNVWLSASAGTGKTQVLSARVLRLLLTPGVEPSQILCLTFTKAGAAE 66 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG-LKVQTI 136 M++R+ ++ W L L+ E+ K G + +++AR L ++L+ PGG L++ TI Sbjct: 67 MANRINAVLARWVRLEAGALAREL-KHLGADFDPETLARARTLFASVLDCPGGGLRIDTI 125 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAF + ++ FP EA++T ++ + + L E L+ ++ A Sbjct: 126 HAFSQWLLGNFPEEADLTPGARPMEDRERELLAREVLADMLSEAEAKGDQSFTDAVSHFT 185 Query: 197 EISNDEDIETLISDIISNRTALK 219 + + + + + S + Sbjct: 186 KTKDPDALRGWLMRCASAADLWE 208 >gi|291542614|emb|CBL15724.1| recombination helicase AddA, Firmicutes type [Ruminococcus bromii L2-63] Length = 1186 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 34/228 (14%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74 + T ++ S VSA AGSGKT +LV+RV++L+ +P LL +T T+AA Sbjct: 4 NWTPQQKNAIYATDGSVLVSAAAGSGKTAVLVERVIKLITREKNPLDVDRLLIVTFTRAA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM R+ A + K+ P + + R LL + + Sbjct: 64 AAEMRERI---------------QAAVNKLLEDDPYNAHLLAQRQLLYSA-------NIS 101 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TI +FC I++++ ++ F IADE + + L +EA +T S ++ FY Sbjct: 102 TIDSFCGDIVREYFHTLDVARDFRIADEGELEILRQEALDNTFESFYDSEDD----CFYS 157 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 +L++ + + + + T LK+ F + + K ++ L + + Sbjct: 158 LLDLFKGKQGDQKLRE-----TVLKISEFLTTQPFPDKWLDDMLENYS 200 >gi|23098637|ref|NP_692103.1| ATP-dependent deoxyribonuclease subunit A [Oceanobacillus iheyensis HTE831] gi|81746699|sp|Q8ERW5|ADDA_OCEIH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|22776864|dbj|BAC13138.1| ATP-dependent deoxyribonuclease subunit A [Oceanobacillus iheyensis HTE831] Length = 1243 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 37/227 (16%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL---LCLTHTK 72 +++ TK ++ V+A AGSGKT +LV+R+++ LLA +P+ + L +T T Sbjct: 1 MVNWTKEQEEAIYTSGSDILVAAAAGSGKTAVLVERIIQKLLAEHNPTNIDALLVVTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA EM +RV A + + P+ + K LL Sbjct: 61 AAAQEMRNRV---------------GAALEQALAANPSSIHLKKQLSLLQRA-------S 98 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T+H+FC I+++ +I F IAD+ + L +E L D+N F Sbjct: 99 ISTLHSFCLDIVKKNAYILDIDPSFRIADDMEMDLLKQEVLDDLLEEWYGDSNPNQDSFF 158 Query: 193 Y---EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +D ++E LI + + F W + ++K Sbjct: 159 EVVNRFTSDRSDAEMEELIRSLHT---------FAMQSPWPNQWLDK 196 >gi|299067242|emb|CBJ38439.1| putative helicase, uvrD subfamily [Ralstonia solanacearum CMR15] Length = 1177 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 56/194 (28%), Positives = 101/194 (52%), Gaps = 3/194 (1%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 A DP RS V A AGSGKT +LV R+LRLLLA A P+ +L +T T+ AA EM R+L+I Sbjct: 21 AACDPLRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPADILAITFTRKAAEEMRQRLLDI 80 Query: 86 ITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + D + E+ + ++ ++ AR L +LE+P + + T H + ++ Sbjct: 81 LAQLAGADDAAVVRELVARTVDEREAPGLVAVARGLYGRVLESPSRMAIDTFHGWFGGLL 140 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204 + PL + + ++ E + +L EA ++ + + EL+ A+ ++++ D Sbjct: 141 RGAPLSSGVPQGASL--REDAGRLRREAWAPFWRGLLAEEHAELRAAYDTLVDLVGDFQA 198 Query: 205 ETLISDIISNRTAL 218 L+ + + R+ Sbjct: 199 GRLLDAMFAQRSDW 212 >gi|326387825|ref|ZP_08209431.1| UvrD/REP helicase [Novosphingobium nitrogenifigens DSM 19370] gi|326207871|gb|EGD58682.1| UvrD/REP helicase [Novosphingobium nitrogenifigens DSM 19370] Length = 1159 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 3/210 (1%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRV 82 Q+ A DP R+ W+SA+AG+GKT +L RVLRLLL + P +LCLT TKA AAEM+ R+ Sbjct: 18 QMHAVDPDRTVWLSASAGTGKTQVLTSRVLRLLLQPDVEPDQILCLTFTKAGAAEMATRI 77 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIHAFCE 141 E + W + D L+ + I G + + +AR +L+ P GGL+++TIHAF + Sbjct: 78 GEKLADWVRMDDVTLATHLQAI-GAPFDPVALDRARSRFAAVLDCPGGGLRIETIHAFSQ 136 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 ++ FP EA + ++ L E L +E A + + Sbjct: 137 WLLSAFPEEAGLRPGARAMEDRDRDLLFREVLIDLLVRAESAGDEAFIDALAALSLRMGE 196 Query: 202 EDIETLISDIISNRTALKLIFFFFSYLWRR 231 D+ + S + + L R Sbjct: 197 SDLAGFLLRCASAQDLWTGPGGWQPPLRPR 226 >gi|187935208|ref|YP_001884280.1| recombination helicase AddA [Clostridium botulinum B str. Eklund 17B] gi|251764511|sp|B2THC8|ADDA_CLOBB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|187723361|gb|ACD24582.1| ATP-dependent nuclease subunit A [Clostridium botulinum B str. Eklund 17B] Length = 1243 Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 34/227 (14%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 + T+ + + + V+A AGSGKT +LV+R+++++ +P LL +T Sbjct: 1 MSGTKWTEEQLSAITTRDCNLLVAAAAGSGKTAVLVERIIKIITNEENPIDIDKLLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAAEM R+ + I+K + P ++ K LL Sbjct: 61 TSAAAAEMRERI---------------ANAISKKLDETPTSKNLQKQLTLL-------NR 98 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + TIH+FC +++ + ++ F I D+ + L E + N+E K Sbjct: 99 SNIMTIHSFCLGVIKNNFHKIDLDPSFRICDQTEGILLKMEIIDELFDDKYDEENQEFIK 158 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 +D ++ L+ L L F + W +K ++ + Sbjct: 159 FIEAFSSYKSDNALKELV---------LSLYNFTMAGPWPKKWLKDA 196 >gi|160934431|ref|ZP_02081818.1| hypothetical protein CLOLEP_03304 [Clostridium leptum DSM 753] gi|156867104|gb|EDO60476.1| hypothetical protein CLOLEP_03304 [Clostridium leptum DSM 753] Length = 1179 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 92/222 (41%), Gaps = 34/222 (15%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74 + T+S++ S S VSA AGSGKT +LVQRV+ L P LL +T T AA Sbjct: 5 NWTESQRWAISARNGSLLVSAAAGSGKTAVLVQRVIERLTDPERPCDADRLLIVTFTNAA 64 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM R+ SA I ++ P + + + + LL + Sbjct: 65 AAEMKERI---------------SAAIGELLQADPANAQLQRQQILL-------NRAHIS 102 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TIH+FC ++++ + +I+ F I+D + L +EA + + + + Sbjct: 103 TIHSFCNELVRENFYKLDISPDFRISDSAEMTLLRQEAMDEVMEELYAKEDGSFQGLSDA 162 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +D + + L F S+ + + +++ Sbjct: 163 FSFGRDDRRLMETVE---------TLYDFIRSHPFPERWLDE 195 >gi|210623665|ref|ZP_03293974.1| hypothetical protein CLOHIR_01924 [Clostridium hiranonis DSM 13275] gi|210153430|gb|EEA84436.1| hypothetical protein CLOHIR_01924 [Clostridium hiranonis DSM 13275] Length = 1256 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 35/232 (15%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTH 70 + TK ++ + + VSA AGSGKT +LV+R++ ++L L +T Sbjct: 1 MGSTKWTKEQREVIDHRDGNLLVSAAAGSGKTAVLVERIISMILDTEEKVDIDKFLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAA+EM R+ + I+ K P+ + K + Sbjct: 61 TNAAASEMRERIGDAISTA---------------LEKDPSNEHLQKQ-------ILFLNK 98 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML-----DNN 185 + TIH+FC +++ + +F I D + + + +EA + D N Sbjct: 99 ANITTIHSFCLDVIKNNIHLITLDPNFRIGDTTECQLIAQEAIDEVFEELYEQGYLGDEN 158 Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 E K F ++++ + + + + +I + + F S+ K + +S Sbjct: 159 SEKGKRFLKLIDSFAERNGDNQVQSLI-----MSIYNFAMSFPNPEKWLNES 205 >gi|227529820|ref|ZP_03959869.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus vaginalis ATCC 49540] gi|227350304|gb|EEJ40595.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus vaginalis ATCC 49540] Length = 1286 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 96/222 (43%), Gaps = 24/222 (10%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + T S+Q D ++ VSA+AGSGKT +LV+R ++L+ H +L +T T AAA Sbjct: 5 NPTPSQQRAIDDRGKNILVSASAGSGKTAVLVERAIKLIREGIHVDRMLMVTFTDAAAKS 64 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M ++ E + + + ++ + + +I + + TIH Sbjct: 65 MRDKIREALQEAVR---------------QPVHNAEEQQQQRRMINEINRLATADISTIH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIM---LDNNEELKKAFY 193 AFC +++++ ++ F + D+ + L EE + + L+ + + +F Sbjct: 110 AFCLKLIKRYYYLIHLDPQFRLLTDDTERLLLQEEIWQQVSEKLYESPLEQANDERASFS 169 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 E++ +++ + D++ LKL + ++ Sbjct: 170 ELVTNFSNDRDAQGLDDLV-----LKLYETANAQPEPESWLQ 206 >gi|103485653|ref|YP_615214.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256] gi|98975730|gb|ABF51881.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256] Length = 1166 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 59/171 (34%), Positives = 94/171 (54%), Gaps = 8/171 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 ++ Q A+DP R W+ A+AG+GKT +L RVLRLLL P +LC+T TKA AA Sbjct: 7 LATLDPHQRAAADPARHVWLGASAGTGKTQVLSARVLRLLLDGVSPEAILCITFTKAGAA 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD-------MSKARHLLITILETPG 129 EM+HR+ + + W + D L ++ + +++AR L T++++PG Sbjct: 67 EMAHRIHQRLAKWVRMEDGELRLDLQALGIDLELHGHDDGVPALIARARALFATVIDSPG 126 Query: 130 GL-KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 G +VQTIH+FC+ ++ FPLEA + F +E+++ L L + Sbjct: 127 GAIRVQTIHSFCQTLLASFPLEAKLLPGFRAIEEDEAGALQRRVLGDLLDA 177 >gi|307292809|ref|ZP_07572655.1| double-strand break repair helicase AddA [Sphingobium chlorophenolicum L-1] gi|306880875|gb|EFN12091.1| double-strand break repair helicase AddA [Sphingobium chlorophenolicum L-1] Length = 1147 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 65/191 (34%), Positives = 99/191 (51%), Gaps = 2/191 (1%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 W+SA+AG+GKTH+L RV RLLL P +LCLT TKA AAEM+ RV + + AW + Sbjct: 28 HVWLSASAGTGKTHVLTARVFRLLLQGVRPENILCLTFTKAGAAEMADRVHDRLAAWVQM 87 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILE-TPGGLKVQTIHAFCEAIMQQFPLEA 151 S L+A++ + G+ + AR L +LE T GGL++QTIH FC+ ++ FPLEA Sbjct: 88 SGPALAADLMAL-GEDHGQEMQDVARRLFAEVLESTGGGLRIQTIHGFCQQLLTAFPLEA 146 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 ++ F D+ + L + +E L +A + + E + Sbjct: 147 DLPPGFRPLDQREQAGLARQTLADMAVVAQQQGDEALIEALQALSLRMGEGGAENFLLRC 206 Query: 212 ISNRTALKLIF 222 + AL+ + Sbjct: 207 AARLDALEALP 217 >gi|210617937|ref|ZP_03291823.1| hypothetical protein CLONEX_04055 [Clostridium nexile DSM 1787] gi|210149076|gb|EEA80085.1| hypothetical protein CLONEX_04055 [Clostridium nexile DSM 1787] Length = 1217 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 101/224 (45%), Gaps = 34/224 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 ++ T ++ + R+ VSA AGSGKT +LV+R++ L + +P LL +T+T+ Sbjct: 2 GVTFTPEQKQVIDLRDRNILVSAAAGSGKTAVLVERIITRLTKDQNPIDVDQLLIVTYTE 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA+EM R+ I K + P+ + + L+ + + Sbjct: 62 AAASEMKERIR---------------TAIEKALEENPDNVHLQRQATLIHSA-------Q 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V TIH+FC ++++ + ++ F IA+E + K L + + L + ++ ++ Sbjct: 100 VTTIHSFCLSVIRDYFHTIDLDPGFRIAEEGELKLLKHDVMEELLERYYEEGSQTFQEFV 159 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +D+ +E LI L+L F SY K +++ Sbjct: 160 ECFASGRDDKKLEELI---------LQLYEFSRSYPNPGKWLQE 194 >gi|317470347|ref|ZP_07929738.1| recombination helicase AddA [Anaerostipes sp. 3_2_56FAA] gi|316902151|gb|EFV24074.1| recombination helicase AddA [Anaerostipes sp. 3_2_56FAA] Length = 1186 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 34/224 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + TK +Q + + S VSA AGSGKT +LV+R++ + + P LL +T+T A Sbjct: 1 MPWTKEQQQVIEERGCSLLVSAAAGSGKTAVLVERIIEKISSKEEPVDVDRLLVVTYTHA 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ I K + P + + L+ ++ Sbjct: 61 AANEMKERIRR---------------AIEKKVEEDPENEHLIRQLSLIHKA-------QI 98 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+FC +++ + + ++ +FAI D+ Q + E L + ++ + Sbjct: 99 TTIHSFCLNLIRDYYYKLDLDPNFAIGDQGQMDLMKLEVLDDVLEEAYAEQSDAFVEFIE 158 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 + ND+ I + L L S++ + ++ Sbjct: 159 SYIPGKNDDRIRDYV---------LGLYESSRSHIDPLLWLSQA 193 >gi|311067549|ref|YP_003972472.1| ATP-dependent deoxyribonuclease subunit A [Bacillus atrophaeus 1942] gi|310868066|gb|ADP31541.1| ATP-dependent deoxyribonuclease subunit A [Bacillus atrophaeus 1942] Length = 1234 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 100/224 (44%), Gaps = 34/224 (15%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74 + T + + V+A AGSGKT +LV+R++R + A +P +L +T T A+ Sbjct: 10 TWTDDQWNAIVSSGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRVLVVTFTNAS 69 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM HR+ E + K K+P + + LL + Sbjct: 70 AAEMKHRIAEAL---------------EKELVKRPGSLHIRRQLSLL-------NRASIS 107 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+H+FC +++++ ++ F IAD+ + + L +E L + D + +KAF+E Sbjct: 108 TLHSFCLQVLRKYYYLIDLDPGFRIADQTEGELLGDE----VLDELFEDEYAKGEKAFFE 163 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +++ + + + ++ ++ F S+ + +E + Sbjct: 164 LVDRYTTDRHDLDLQHLVK-----RVYEFSRSHPDPKTWLEGFV 202 >gi|167748814|ref|ZP_02420941.1| hypothetical protein ANACAC_03588 [Anaerostipes caccae DSM 14662] gi|167651784|gb|EDR95913.1| hypothetical protein ANACAC_03588 [Anaerostipes caccae DSM 14662] Length = 1186 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 34/224 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + TK +Q + + S VSA AGSGKT +LV+R++ + + P LL +T+T A Sbjct: 1 MPWTKEQQQVIEERGCSLLVSAAAGSGKTAVLVERIIEKISSKEEPVDVDRLLVVTYTHA 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ I K + P + + L+ ++ Sbjct: 61 AANEMKERIRR---------------AIEKKVEEDPENEHLIRQLSLIHKA-------QI 98 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+FC +++ + + ++ +FAI D+ Q + E L + ++ + Sbjct: 99 TTIHSFCLNLIRDYYYKLDLDPNFAIGDQGQMDLMKLEVLDDVLEEAYAEQSDAFVEFIE 158 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 + ND+ I + L L S++ + ++ Sbjct: 159 SYIPGKNDDRIRDYV---------LGLYESSRSHIDPLLWLSQA 193 >gi|311029443|ref|ZP_07707533.1| ATP-dependent nuclease, subunit A [Bacillus sp. m3-13] Length = 1255 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 94/219 (42%), Gaps = 31/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 T + R V+A AGSGKT +LV+R++ ++ + LL +T T A+AAE Sbjct: 14 WTDDQWKAIVASGRDILVAAAAGSGKTAVLVERMIHKIVEEHVDVDRLLVVTFTNASAAE 73 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HR+ E + K KKP + + LL + TIH Sbjct: 74 MRHRIGEAL---------------EKQLEKKPASLHLRRQLSLL-------NRASISTIH 111 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC +++++ +I F IAD + + + EE + + +L F+E+++ Sbjct: 112 SFCLEVVRKYYYLIDIDPSFRIADTTEIQLMQEEVLEGVFEEEYGKEDNDL---FFELVD 168 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ + + +++ L L F + K +++ Sbjct: 169 RYTNDRSDGALQNLV-----LDLHEFSRANPNPDKWLDE 202 >gi|219853971|ref|YP_002471093.1| hypothetical protein CKR_0628 [Clostridium kluyveri NBRC 12016] gi|251764517|sp|B9DZK4|ADDA_CLOK1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|219567695|dbj|BAH05679.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 1238 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 93/226 (41%), Gaps = 35/226 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAA 75 T++++ P + V+A AG+GKT +LV+R+L+ ++ LL +T T AAA Sbjct: 8 WTETQKSAIFTPNCNLLVAAGAGTGKTAVLVERILQKVINDSEEVDIDKLLVVTFTNAAA 67 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM RV E ++ K+ ++ + LL + T Sbjct: 68 SEMKERVGEALS---------------KLLELNCTSKNLQRQLALLNQS-------NIMT 105 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ ++ +F I D+ +SK L ++A + N F + Sbjct: 106 IHSFCLKVIKNNFHRIDLDPNFRICDDTESKLLKQDALLELFEEKYEEENL----GFLNL 161 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 + ++ L DI+ L L F W ++ ++ L Sbjct: 162 ADGYGGKNDSKL-QDIV-----LSLYEFSQGSPWPKRWLQDVLKDF 201 >gi|153953342|ref|YP_001394107.1| ATP-dependent exonuclease [Clostridium kluyveri DSM 555] gi|251764518|sp|A5N628|ADDA_CLOK5 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|146346223|gb|EDK32759.1| Predicted ATP-dependent exonuclease [Clostridium kluyveri DSM 555] Length = 1235 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 93/226 (41%), Gaps = 35/226 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAA 75 T++++ P + V+A AG+GKT +LV+R+L+ ++ LL +T T AAA Sbjct: 5 WTETQKSAIFTPNCNLLVAAGAGTGKTAVLVERILQKVINDSEEVDIDKLLVVTFTNAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM RV E ++ K+ ++ + LL + T Sbjct: 65 SEMKERVGEALS---------------KLLELNCTSKNLQRQLALLNQS-------NIMT 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ ++ +F I D+ +SK L ++A + N F + Sbjct: 103 IHSFCLKVIKNNFHRIDLDPNFRICDDTESKLLKQDALLELFEEKYEEENL----GFLNL 158 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 + ++ L DI+ L L F W ++ ++ L Sbjct: 159 ADGYGGKNDSKL-QDIV-----LSLYEFSQGSPWPKRWLQDVLKDF 198 >gi|291523612|emb|CBK81905.1| recombination helicase AddA, Firmicutes type [Coprococcus catus GD/7] Length = 1228 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 90/225 (40%), Gaps = 34/225 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 I ++ +Q + S VSA AGSGKT +LV+R++RLL HP LL +T T A Sbjct: 3 IQWSEKQQAVIDARGCSVLVSAAAGSGKTAVLVERLIRLLTDEKHPVDIERLLVVTFTNA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ + + ++P+ + + + LL ++ Sbjct: 63 AAAEMRERIGRGL---------------DQKLLEEPDHTAWIRQKLLLPCA-------QI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+ C +++ ++ F + DE + K L + + + + N + Sbjct: 101 STIHSLCLKTIREHFEVLDLDPSFRLGDEAELKLLKSDVAEDVMETYYASENRAFRAFVD 160 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 D+ I +I + L + + W ++ L Sbjct: 161 RYANGKTDQGIAEMI---------IALYDYSRGFPWPEYWLKHCL 196 >gi|296132525|ref|YP_003639772.1| recombination helicase AddA [Thermincola sp. JR] gi|296031103|gb|ADG81871.1| recombination helicase AddA [Thermincola potens JR] Length = 1279 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 34/226 (15%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 + T + + + VSA AG+GKT +LV+R++R ++ P LL +T Sbjct: 1 MGGTKWTNEQITAITTRNCNLLVSAAAGAGKTAVLVERIIRRIVDPIDPVDVDRLLIVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 TKAAA EM R+ I + P +++ LL Sbjct: 61 TKAAANEMRERI---------------GLAIARELDNNPASLHLNRQATLLSRAY----- 100 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + T+H+FC +++Q+ + F +AD+ ++ ++ E + + +EE Sbjct: 101 --ITTLHSFCLDVVRQYFYRLELDPAFRVADDAEAALMLMETLEDLFEELYSSGDEEFLA 158 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +D + LI D+ F S W ++K Sbjct: 159 LVDAYGGERDDSRLHQLILDV---------YRFAVSNPWPEYWLDK 195 >gi|220935292|ref|YP_002514191.1| UvrD/REP helicase [Thioalkalivibrio sp. HL-EbGR7] gi|219996602|gb|ACL73204.1| UvrD/REP helicase [Thioalkalivibrio sp. HL-EbGR7] Length = 1147 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 61/194 (31%), Positives = 102/194 (52%), Gaps = 4/194 (2%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 LA+DP+ + V A+AGSGKT++LV R+LRLLLA A P +L +T T+ AA EM R+ E Sbjct: 16 LATDPSLNISVFASAGSGKTYLLVTRILRLLLAGARPDGILAVTFTRLAAGEMQSRLTER 75 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + W L D L + + G + + +AR L L ++ T HAFC+ ++ Sbjct: 76 LREWQTLDDTALDRALADM-GVSVDDAVRERARRLFEQTLLADRPVRATTFHAFCQDLLA 134 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-EDI 204 +FPLEA + F +AD E ++L + A + ++ + + +A ++ N + + Sbjct: 135 RFPLEARVPPGFELADNE--RELQDRAWDALVSEATRAPDATVARALETLIATLNSVDSV 192 Query: 205 ETLISDIISNRTAL 218 + +S+R Sbjct: 193 RKALDGFLSHREDW 206 >gi|254725483|ref|ZP_05187265.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A1055] Length = 1241 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA Sbjct: 14 WTDDQWKAVVATGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +R+ E + K+ +P + K LL + T Sbjct: 74 QEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ + ++ F IA++ +++ L EE L + + F+E+ Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168 Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ ++D + L R L L ++ K ++K Sbjct: 169 VDRYTSDRSDDDL------QRMILALYTESRAHPNPEKWLDK 204 >gi|147677999|ref|YP_001212214.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Pelotomaculum thermopropionicum SI] gi|251764536|sp|A5D1P3|ADDA_PELTS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|146274096|dbj|BAF59845.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Pelotomaculum thermopropionicum SI] Length = 1269 Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 34/220 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + S V+A+AG+GKT +L +R++R + P LL +T T AAA Sbjct: 19 WTAEQLEAISARGGDVLVAASAGTGKTAVLAERIIRRITDPIKPVDVDRLLVVTFTSAAA 78 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + + ++P + + LL G + T Sbjct: 79 AEMRERIR---------------LALAREISRRPESGHLQRQAALL-------GRACIST 116 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++Q + F +ADE ++ + A L + F + Sbjct: 117 VHSFCLDLLRQHFYRIGLDPSFRVADETEAALIQTGA----LEEVFERRYAAEDNIFAAL 172 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 ++ + L+ +++ L F S W ++ Sbjct: 173 VDCYGGRHDDALLQELV-----LDAYKFARSTPWPEDWLD 207 >gi|321314788|ref|YP_004207075.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis BSn5] gi|320021062|gb|ADV96048.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis BSn5] Length = 1232 Score = 171 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 100/224 (44%), Gaps = 34/224 (15%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74 + T + + V+A AGSGKT +LV+R++R + A +P LL +T T A+ Sbjct: 10 TWTDDQWNAIVSTGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNAS 69 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM HR+ E + K ++P + + LL + Sbjct: 70 AAEMKHRIAEAL---------------EKELVQRPGSLHIRRQLSLL-------NRASIS 107 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+H+FC +++++ ++ F IAD+ + + L +E L + D + +KAF+E Sbjct: 108 TLHSFCLQVLKKYYYLIDLDPGFRIADQTEGELLGDE----VLDELFEDEYAKGEKAFFE 163 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +++ + + + ++ ++ + S+ K +E + Sbjct: 164 LVDRYTTDRHDLDLQFLVK-----QVYEYSRSHPNPEKWLESFV 202 >gi|169831437|ref|YP_001717419.1| UvrD-like DNA helicase, C terminal [Candidatus Desulforudis audaxviator MP104C] gi|251764572|sp|B1I493|ADDA_DESAP RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|169638281|gb|ACA59787.1| UvrD-like DNA helicase, C terminal [Candidatus Desulforudis audaxviator MP104C] Length = 1230 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 90/230 (39%), Gaps = 46/230 (20%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74 + T ++ ++ V+A AGSGKT +LV+RV+R + A P LL +T T AA Sbjct: 5 NWTGPQEAAIGCREKNLLVAAGAGSGKTAVLVERVIRRISDPAAPVDVDRLLVVTFTNAA 64 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV E + + K P + LL + Sbjct: 65 AAEMRKRVAEAL---------------ERELEKHPGMPLLEHQLRLLPQA-------DIT 102 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TIH+FC +++++ ++ F +ADE ++ L +E + Sbjct: 103 TIHSFCAELLRRYHYLIDLDPEFRVADETEAAILRQETLEEFFEEQYR------------ 150 Query: 195 ILEISNDEDIETLISDIISNRTALKLIF-------FFFSYLWRRKIIEKS 237 I+ D D+E L+ R LKL F S W + ++ Sbjct: 151 --VITGDPDLEFLVEAYGGERDDLKLQNLVSGLHRFARSNPWPEAWLARA 198 >gi|311110685|ref|ZP_07712082.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri MV-22] gi|311065839|gb|EFQ46179.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri MV-22] Length = 1204 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 49/199 (24%), Positives = 93/199 (46%), Gaps = 23/199 (11%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + + TK + +D + VSA+AGSGKT +LV+RVL+ +L+ S+LL +T TKAAA Sbjct: 1 MTNFTKEQDQAINDAGKDILVSASAGSGKTTVLVERVLKKILSGTPVSSLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + I+ ++ ++ L + L + T Sbjct: 61 REMKERIKQKIS----------------------DQLEIEPDNQFLRSQLLDVDTANIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 I +FC ++++F ++ F++ DE Q++ L E A + A + +N++ + + Sbjct: 99 IDSFCLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALREIEADYLEGDNQDFQDFYDN 158 Query: 195 ILEISNDEDIETLISDIIS 213 + E L+ + + Sbjct: 159 FSGDRDAEGARNLLLQLYN 177 >gi|116629672|ref|YP_814844.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus gasseri ATCC 33323] gi|238854242|ref|ZP_04644586.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri 202-4] gi|122273390|sp|Q043G6|ADDA_LACGA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116095254|gb|ABJ60406.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus gasseri ATCC 33323] gi|238833053|gb|EEQ25346.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri 202-4] Length = 1204 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 49/199 (24%), Positives = 93/199 (46%), Gaps = 23/199 (11%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + + TK + +D + VSA+AGSGKT +LV+RVL+ +L+ S+LL +T TKAAA Sbjct: 1 MTNFTKEQDQAINDAGKDILVSASAGSGKTTVLVERVLKKILSGTPVSSLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + I+ ++ ++ L + L + T Sbjct: 61 REMKERIKQKIS----------------------DQLEIEPDNQFLRSQLLDVDTANIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 I +FC ++++F ++ F++ DE Q++ L E A + A + +N++ + + Sbjct: 99 IDSFCLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALREIEADYLEGDNQDFQDFYDN 158 Query: 195 ILEISNDEDIETLISDIIS 213 + E L+ + + Sbjct: 159 FSGDRDAEGARNLLLQLYN 177 >gi|312898123|ref|ZP_07757515.1| ATP-dependent nuclease subunit A [Megasphaera micronuciformis F0359] gi|310620791|gb|EFQ04359.1| ATP-dependent nuclease subunit A [Megasphaera micronuciformis F0359] Length = 1220 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 108/228 (47%), Gaps = 28/228 (12%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLT 69 +D ++ T++++ + ++ +SA AGSGKT +LV+R++R L+ +P + ++ +T Sbjct: 1 MVDKMAWTEAQEKAITSRNQNLLLSAAAGSGKTAVLVERIIRRLIDVDNPTDITEIMVVT 60 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 TKAAA EM R+ + + DE LSA + + + LL + Sbjct: 61 FTKAAAGEMRERIGGALLKAA--EDETLSAAV---------RESARRQAALLPSA----- 104 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 ++ T HAFC+ +++ ++ F IA E+ + L + ++ +EE Sbjct: 105 --RISTFHAFCQYVLRTRFYTIDLDPQFTIAGTEELELLKQSVWDDV--ALSYYEDEEKV 160 Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 + + ++ ++ + +++I+ +K + S W + +E++ Sbjct: 161 RTMTALTDVFGNDRGDAGLTEIV-----MKAYEYIRSQPWPLQWLEEA 203 >gi|268319455|ref|YP_003293111.1| ATP-dependent nuclease subunit A [Lactobacillus johnsonii FI9785] gi|262397830|emb|CAX66844.1| ATP-dependent nuclease subunit A [Lactobacillus johnsonii FI9785] Length = 1204 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 30/231 (12%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + + TK + +D + VSA+AGSGKT +LV+RVL+ +L+ S+LL +T TKAAA Sbjct: 1 MTNFTKEQNQAINDYGKDILVSASAGSGKTTVLVERVLKRVLSGTPVSSLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + I+ ++ + L + L + T Sbjct: 61 REMKERIKQKIS----------------------DQIEKEPNNQFLRSQLLDVDTANIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++++F ++ F++ +E +L++E + L+ N++ + FY+ Sbjct: 99 IDSFCLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALHEIEIEYLEKNDQDFQDFYDN 158 Query: 196 LEISND-EDIETLISDIIS------NRTALKLIFFFFSYLWRRKIIEKSLW 239 D E L+ + + N L SY + +IE LW Sbjct: 159 FSGDRDAEGARNLLLQLYNTVVTEPNYEKF-LNNLPNSYQVQDDLIESDLW 208 >gi|227890027|ref|ZP_04007832.1| possible ATP-dependent deoxyribonuclease, subunit A [Lactobacillus johnsonii ATCC 33200] gi|227849471|gb|EEJ59557.1| possible ATP-dependent deoxyribonuclease, subunit A [Lactobacillus johnsonii ATCC 33200] Length = 1204 Score = 171 bits (434), Expect = 8e-41, Method: Composition-based stats. Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 30/231 (12%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + + TK + +D + VSA+AGSGKT +LV+RVL+ +L+ S+LL +T TKAAA Sbjct: 1 MTNFTKEQNQAINDYGKDILVSASAGSGKTTVLVERVLKRILSGTPVSSLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + I+ ++ + L + L + T Sbjct: 61 REMKERIKQKIS----------------------DQIEKESNNQFLRSQLLDVDTANIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++++F ++ F++ +E +L++E + L+ N++ + FY+ Sbjct: 99 IDSFCLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALHEIEIEYLEKNDQDFQDFYDN 158 Query: 196 LEISND-EDIETLISDIIS------NRTALKLIFFFFSYLWRRKIIEKSLW 239 D E L+ + + N L SY + +IE LW Sbjct: 159 FSGDRDAEGARNLLLQLYNTVVTEPNYEKF-LNNLPNSYQVQDDLIESDLW 208 >gi|300215188|gb|ADJ79604.1| ATP-dependent helicase/nuclease subunit A (ATP-dependent helicase/nuclease addA) [Lactobacillus salivarius CECT 5713] Length = 1248 Score = 171 bits (433), Expect = 9e-41, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 88/221 (39%), Gaps = 29/221 (13%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 + T ++Q D ++ V+A+AGSGKT +LV+RV+ + LL +T T+AA Sbjct: 3 NGFKFTPAQQKAIEDTGKNILVAASAGSGKTRVLVERVINKIKQGVSIDELLVVTFTEAA 62 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ + K+ + +D + + +T L + Sbjct: 63 AKEMKERIQIALR-------------------KELSTADSEEEKRRYLTQLSKLNVANIS 103 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS-IMLDNNEELKKAFY 193 T+HAFC I++Q+ N+ F + E+ L++E L + E K Sbjct: 104 TLHAFCLQIIKQYYYVINLDPMFRMLTEDTEVALLQENVWDDLREKWYSKKSPEFKNLVI 163 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 ND+ + L+ +K F + + + Sbjct: 164 NFSSDRNDDGLSELV---------MKTYQFANANPNPEEWL 195 >gi|166032801|ref|ZP_02235630.1| hypothetical protein DORFOR_02516 [Dorea formicigenerans ATCC 27755] gi|166027158|gb|EDR45915.1| hypothetical protein DORFOR_02516 [Dorea formicigenerans ATCC 27755] Length = 190 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 88/216 (40%), Gaps = 34/216 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 + TK +Q + R+ VSA AGSGKT +LV+R++ +L HP LL +T T+ Sbjct: 2 GVKWTKQQQQVIDLRDRNILVSAAAGSGKTAVLVERIITMLTDEEHPVNVDELLIVTFTE 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA EM R+ I K + P + + L+ + Sbjct: 62 AAAGEMKERIR---------------GAIEKALEENPENEHLKRQATLIHNA-------Q 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TIH+FC ++++ +I F A+E + K L + L ++ + + ++ F Sbjct: 100 ITTIHSFCLSVIRDHFHVIDIDPGFRTAEEGELKLL----RHDVLDELLEEKYAQKEERF 155 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYL 228 + + ++I K + SY Sbjct: 156 LRFSNAYGGRRNDKKLEEMIE-----KAYDYSRSYP 186 >gi|152974673|ref|YP_001374190.1| recombination helicase AddA [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|251764504|sp|A7GM37|ADDA_BACCN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|152023425|gb|ABS21195.1| Recombination helicase AddA [Bacillus cytotoxicus NVH 391-98] Length = 1242 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 35/221 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA Sbjct: 15 WTDDQWKAVVAHGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 74 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +R+ E + K+ ++P+ + K LL + T Sbjct: 75 QEMKNRIGEAL---------------EKVLIEEPSSRHIRKQLSLL-------NKASIST 112 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194 IH+FC +++ + +I F IA++ +++ L EE L ++ N+ + Sbjct: 113 IHSFCLQVIRSYYYMLDIDPRFRIANQTENELLKEEVLDDILEEEYGMEENQLFFELVDR 172 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 ND+D++ +I + + A + K ++ Sbjct: 173 YTSDRNDDDLQRMILALHTAAGA---------HPNPEKWLD 204 >gi|301301162|ref|ZP_07207319.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851291|gb|EFK79018.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius ACS-116-V-Col5a] Length = 1248 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 29/221 (13%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 + T ++Q D ++ V+A+AGSGKT +LV+RV+ + LL +T T+AA Sbjct: 3 NGFKFTPAQQKAIEDTGKNILVAASAGSGKTRVLVERVINKIKQGVSIDELLVVTFTEAA 62 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ + K+ + +D + + +T L + Sbjct: 63 AKEMKERIQIALR-------------------KELSTADSEEEKRRYLTQLSKLNVANIS 103 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS-IMLDNNEELKKAFY 193 T+HAFC I++Q+ N+ F + E+ L++E L + E + Sbjct: 104 TLHAFCLQIIKQYYYVINLDPMFRMLTEDTEVALLQENVWDDLREKWYSKKSPEFENLVI 163 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 ND+ + L+ +K F + + + Sbjct: 164 NFSSDRNDDGLSELV---------MKTYQFANANPNPEEWL 195 >gi|282852209|ref|ZP_06261561.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri 224-1] gi|282556628|gb|EFB62238.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri 224-1] Length = 828 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 49/199 (24%), Positives = 93/199 (46%), Gaps = 23/199 (11%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + + TK + +D + VSA+AGSGKT +LV+RVL+ +L+ S+LL +T TKAAA Sbjct: 1 MTNFTKEQDQAINDAGKDILVSASAGSGKTTVLVERVLKKILSGTPVSSLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + I+ ++ ++ L + L + T Sbjct: 61 REMKERIKQKIS----------------------DQLEIEPDNQFLRSQLLDVDTANIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 I +FC ++++F ++ F++ DE Q++ L E A + A + +N++ + + Sbjct: 99 IDSFCLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALREIEADYLEGDNQDFQDFYDN 158 Query: 195 ILEISNDEDIETLISDIIS 213 + E L+ + + Sbjct: 159 FSGDRDAEGARNLLLQLYN 177 >gi|308181395|ref|YP_003925523.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046886|gb|ADN99429.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp. plantarum ST-III] Length = 1249 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 19/222 (8%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 + + T S+Q + + + VSA+AGSGKT +L++R++R +LA + LL +T T A Sbjct: 3 EGTNYTPSQQAVIAQQGNNLLVSASAGSGKTTVLIERIMRKILAGTNIDQLLVVTFTNLA 62 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A M ++ I + I+++ P ++ S A L L G + Sbjct: 63 AKHMKQKLESQI-----------NKRISQLMTDNPAQTTASPAIRQLRQQLNLLGVANIS 111 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+ AFC ++Q++ ++ F + + LI + ++ + D + L Sbjct: 112 TLDAFCLRVIQRYYYVIDLDPVFRLLTDNTEGLLIRDQVWDSVREQLYDEDGTLFDLLT- 170 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 SND + L +R +L F S + K Sbjct: 171 -ANFSNDRSDDGL------SRLIFRLFDFAQSTPDPEGWLSK 205 >gi|300361736|ref|ZP_07057913.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri JV-V03] gi|300354355|gb|EFJ70226.1| ATP-dependent nuclease subunit A [Lactobacillus gasseri JV-V03] Length = 1204 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 32/222 (14%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + TK + +D + VSA+AGSGKT +LV+RVL+ +L+ S+LL +T TKAAA Sbjct: 1 MTKFTKEQDQAINDSGKDILVSASAGSGKTTVLVERVLKKILSGTPVSSLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + I+ ++ ++ L L + T Sbjct: 61 REMKERIKQKIS----------------------DQLEVEPDNQFLRNQLLDIDTANIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 I +FC ++++F ++ F++ DE Q + L E A + A + ++N++ + + Sbjct: 99 IDSFCLDVIRRFYYVIDLDPQFSVLTDETQGELLKERALREIEADYLEEDNQDFQDFYDN 158 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + E L+ L+L + K +++ Sbjct: 159 FSGDRDAEGARNLL---------LQLYNTVTTQPNYEKFLDE 191 >gi|270289913|ref|ZP_06196139.1| recombination helicase AddA [Pediococcus acidilactici 7_4] gi|270281450|gb|EFA27282.1| recombination helicase AddA [Pediococcus acidilactici 7_4] Length = 1238 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 29/218 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T S+Q + VSA+AGSGKT +LV+RV++ ++ LL +T T+AAAAEM Sbjct: 7 TPSQQQAIDSSGHNILVSASAGSGKTSVLVERVIQKIINGEDVDRLLVVTFTEAAAAEMK 66 Query: 80 HRVLEII-TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ I S + D L ++ GK N + T+HA Sbjct: 67 ERIRAAIMKKISEVKDADLQNHLSLQLGKLNN--------------------ANISTLHA 106 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC A+++ + ++ F I D +S+ L E+ L + +++E+ + F + Sbjct: 107 FCMAVIRNYYYVIDLDPAFRIMDPTESELLKEQVWAD-LREELYESDEDGQ--FARLTRN 163 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +++ + + +++ L L F + + K Sbjct: 164 FSNDRSDAGLQELM-----LDLFEFANANPDPEAWLTK 196 >gi|206967662|ref|ZP_03228618.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH1134] gi|206736582|gb|EDZ53729.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH1134] Length = 1241 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 52/233 (22%), Positives = 97/233 (41%), Gaps = 35/233 (15%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---ST 64 + E + T + R V+A AGSGKT +LV+R+++ ++ +P Sbjct: 3 ENWPEKPEGSQWTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDR 62 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 LL +T T AAA EM +R+ E + K+ +P + K LL Sbjct: 63 LLVVTFTNAAAQEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL--- 104 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 + TIH+FC +++ + ++ F IA++ +++ L EE L Sbjct: 105 ----NKASISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIE 160 Query: 185 NEELKKAFYEILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + F+E+++ ++D + L R L L ++ K ++K Sbjct: 161 DNTI---FFELVDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204 >gi|304385834|ref|ZP_07368178.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus acidilactici DSM 20284] gi|304328338|gb|EFL95560.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus acidilactici DSM 20284] Length = 1238 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 29/218 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T S+Q + VSA+AGSGKT +LV+RV++ ++ LL +T T+AAAAEM Sbjct: 7 TPSQQQAIDSSGHNILVSASAGSGKTSVLVERVIQKIINGEDVDRLLVVTFTEAAAAEMK 66 Query: 80 HRVLEII-TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ I S + D L ++ GK N + T+HA Sbjct: 67 ERIRAAIMKKISEVKDADLQNHLSLQLGKLNN--------------------ANISTLHA 106 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC A+++ + ++ F I D +S+ L E+ L + +++E+ + F + Sbjct: 107 FCMAVIRNYYYVIDLDPAFRIMDPTESELLKEQVWAD-LREELYESDEDGQ--FARLTRN 163 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +++ + + +++ L L F + + K Sbjct: 164 FSNDRSDAGLQELM-----LDLFEFANANPDPEAWLTK 196 >gi|301052778|ref|YP_003790989.1| ATP-dependent nuclease subunit A [Bacillus anthracis CI] gi|300374947|gb|ADK03851.1| ATP-dependent nuclease, subunit A [Bacillus cereus biovar anthracis str. CI] Length = 1241 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA Sbjct: 14 WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +R+ E + K+ +P + K LL + T Sbjct: 74 QEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ + ++ F IA++ +++ L EE L + + F+E+ Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNAI---FFEL 168 Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ ++D + L R L L ++ K ++K Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204 >gi|75760177|ref|ZP_00740235.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492341|gb|EAO55499.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 757 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 35/226 (15%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHT 71 + T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T Sbjct: 10 EGSQWTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFT 69 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAA EM +R+ E + K+ +P + K LL Sbjct: 70 NAAAQEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKA 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + TIH+FC +++ + ++ F IA++ +++ L EE L + + Sbjct: 108 SISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI--- 164 Query: 192 FYEILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 F+E+++ ++D + L R L L ++ K ++K Sbjct: 165 FFELVDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204 >gi|49480014|ref|YP_035378.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|81613917|sp|Q6HM43|ADDA_BACHK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|49331570|gb|AAT62216.1| ATP-dependent nuclease, subunit A [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 1241 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA Sbjct: 14 WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +R+ E + K+ +P + K LL + T Sbjct: 74 QEMKNRIGEAL---------------EKVLIDEPGSQHIRKQLSLL-------NKASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ + ++ F IA++ +++ L EE L + + F+E+ Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168 Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ ++D + L R L L ++ K ++K Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204 >gi|300768583|ref|ZP_07078482.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493890|gb|EFK29059.1| ATP-dependent nuclease subunit A [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 1249 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 19/222 (8%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 + + T S+Q + + + VSA+AGSGKT +L++R++R +LA + LL +T T A Sbjct: 3 EGTNYTPSQQAVIAQQGNNLLVSASAGSGKTTVLIERIMRKILAGTNIDQLLVVTFTNLA 62 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A M ++ I + I+++ P ++ S A L L G + Sbjct: 63 AKHMKQKLESQI-----------NKRISQLMTDNPAQTTASPAIRQLRQQLNLLGVANIS 111 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+ AFC ++Q++ ++ F + + LI + ++ + D + L Sbjct: 112 TLDAFCLRVIQRYYYVIDLDPVFRLLTDNTEGLLIRDQVWDSVREQLYDEDGTLFDLLT- 170 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 SND + L +R +L F S + K Sbjct: 171 -ANFSNDRSDDGL------SRLIFRLFDFAQSTPDPEGWLSK 205 >gi|196036255|ref|ZP_03103654.1| ATP-dependent nuclease, subunit A [Bacillus cereus W] gi|195991230|gb|EDX55199.1| ATP-dependent nuclease, subunit A [Bacillus cereus W] Length = 1241 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 35/222 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA Sbjct: 14 WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +R+ E + K+ +P + K LL + T Sbjct: 74 QEMKNRIGEAL---------------EKVLIDEPGSQHIRKQLSLL-------NKASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194 IH+FC +++ + ++ F IA++ +++ L EE L +++N + Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNMIFFELVDR 171 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +D+D++ +I L L ++ K ++K Sbjct: 172 YTSDRSDDDLQRMI---------LALHTESRAHPNPEKWLDK 204 >gi|291483547|dbj|BAI84622.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp. natto BEST195] Length = 1232 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 99/224 (44%), Gaps = 34/224 (15%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74 + T + + V+A AGSGKT +LV+R++R + A +P LL +T T A+ Sbjct: 10 TWTDDQWNAIVSTGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNAS 69 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM HR+ E + K ++P + + LL + Sbjct: 70 AAEMKHRIAEAL---------------EKELVQRPGSLHIRRQLSLL-------NRASIS 107 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+H+FC +++++ ++ F IAD+ + + L +E L + D + +KAF+E Sbjct: 108 TLHSFCLQVLKKYYYLIDLDPGFRIADQTEGELLGDE----VLDELFEDEYAKGEKAFFE 163 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +++ + + + ++ ++ + S+ +E + Sbjct: 164 LVDRYTTDRHDLDLQFLVK-----QVYEYSRSHPNPEAWLESFV 202 >gi|42780319|ref|NP_977566.1| ATP-dependent nuclease, subunit A [Bacillus cereus ATCC 10987] gi|81569872|sp|Q73C23|ADDA_BACC1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|42736238|gb|AAS40174.1| ATP-dependent nuclease, subunit A [Bacillus cereus ATCC 10987] Length = 1241 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA Sbjct: 14 WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +R+ E + K+ +P + K LL + T Sbjct: 74 QEMKNRIGEAL---------------EKVLIDEPGSQHIRKQLSLL-------NKASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ + ++ F IA++ +++ L EE L + + F+E+ Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168 Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ ++D + L R L L ++ K ++K Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204 >gi|308173040|ref|YP_003919745.1| ATP-dependent deoxyribonuclease subunit A [Bacillus amyloliquefaciens DSM 7] gi|307605904|emb|CBI42275.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus amyloliquefaciens DSM 7] Length = 1235 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 96/223 (43%), Gaps = 34/223 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R++R + A P LL +T T A+A Sbjct: 12 WTDDQWSAIVSSGRDILVAAAAGSGKTAVLVERMIRKITAEEEPVDVDRLLVVTFTNASA 71 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM HR+ E + K K P + + LL + T Sbjct: 72 AEMKHRIAEAL---------------EKELAKNPGSLHIRRQLSLL-------NRASIST 109 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++++ ++ F +AD+ + + L +E L + D + +AFYE+ Sbjct: 110 LHSFCLQVLKKYYYMIDLDPGFRMADQTEGELLGDE----VLDELFEDEYAKGNQAFYEL 165 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 ++ + + + D++ ++ + S+ ++ + Sbjct: 166 VDRYTTDRHDLDLQDLVK-----RVYEYSRSHPDPEAWLKSFV 203 >gi|218896177|ref|YP_002444588.1| ATP-dependent nuclease, subunit A [Bacillus cereus G9842] gi|251764501|sp|B7IL84|ADDA_BACC2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|218544151|gb|ACK96545.1| ATP-dependent nuclease, subunit A [Bacillus cereus G9842] Length = 1241 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 35/226 (15%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHT 71 + T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T Sbjct: 10 EGSQWTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFT 69 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAA EM +R+ E + K+ +P + K LL Sbjct: 70 NAAAQEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKA 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + TIH+FC +++ + ++ F IA++ +++ L EE L + + Sbjct: 108 SISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI--- 164 Query: 192 FYEILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 F+E+++ ++D + L R L L ++ K ++K Sbjct: 165 FFELVDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204 >gi|328911095|gb|AEB62691.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus amyloliquefaciens LL3] Length = 1234 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 96/223 (43%), Gaps = 34/223 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R++R + A P LL +T T A+A Sbjct: 11 WTDDQWSAIVSSGRDILVAAAAGSGKTAVLVERMIRKITAEEEPVDVDRLLVVTFTNASA 70 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM HR+ E + K K P + + LL + T Sbjct: 71 AEMKHRIAEAL---------------EKELAKNPGSLHIRRQLSLL-------NRASIST 108 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++++ ++ F +AD+ + + L +E L + D + +AFYE+ Sbjct: 109 LHSFCLQVLKKYYYMIDLDPGFRMADQTEGELLGDE----VLDELFEDEYAKGNQAFYEL 164 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 ++ + + + D++ ++ + S+ ++ + Sbjct: 165 VDRYTTDRHDLDLQDLVK-----RVYEYSRSHPDPEAWLKSFV 202 >gi|47567601|ref|ZP_00238312.1| reticulocyte binding protein [Bacillus cereus G9241] gi|47555796|gb|EAL14136.1| reticulocyte binding protein [Bacillus cereus G9241] Length = 1241 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA Sbjct: 14 WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +R+ E + K+ +P + K LL + T Sbjct: 74 QEMKNRIGEAL---------------EKVLINEPGSQHIRKQLSLL-------NKASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ + ++ F IA++ +++ L EE L + + F+E+ Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168 Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ ++D + L R L L ++ K ++K Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204 >gi|254557326|ref|YP_003063743.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum JDM1] gi|254046253|gb|ACT63046.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum JDM1] Length = 1249 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 19/222 (8%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 + + T S+Q + + + VSA+AGSGKT +L++R++R +LA + LL +T T A Sbjct: 3 EGTNYTPSQQAVIAQQGNNLLVSASAGSGKTTVLIERIMRKILAGTNIDQLLVVTFTNLA 62 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A M ++ I + I+++ P ++ S A L L G + Sbjct: 63 AKHMKQKLESQI-----------NKRISQLMTDNPAQTTASPAIRQLRQQLNLLGVANIS 111 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+ AFC ++Q++ ++ F + + LI + ++ + D + L Sbjct: 112 TLDAFCLRVIQRYYYVIDLDPVFRLLTDNTEGLLIRDQVWDSVREQLYDEDGTLFDLLT- 170 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 SND + L +R +L F S + K Sbjct: 171 -ANFSNDRSDDGL------SRLIFRLFDFAQSTPDPEGWLSK 205 >gi|148543293|ref|YP_001270663.1| recombination helicase AddA [Lactobacillus reuteri DSM 20016] gi|184152703|ref|YP_001841044.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri JCM 1112] gi|227364360|ref|ZP_03848453.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri MM2-3] gi|325683559|ref|ZP_08163075.1| exonuclease RexA [Lactobacillus reuteri MM4-1A] gi|251764530|sp|A5VHK2|ADDA_LACRD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|251764531|sp|B2G532|ADDA_LACRJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|148530327|gb|ABQ82326.1| Recombination helicase AddA [Lactobacillus reuteri DSM 20016] gi|183224047|dbj|BAG24564.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri JCM 1112] gi|227070673|gb|EEI09003.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri MM2-3] gi|324977909|gb|EGC14860.1| exonuclease RexA [Lactobacillus reuteri MM4-1A] Length = 1392 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 28/222 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T ++ +D + VSA+AGSGKT +LV R + L+ +L +T T AAA M Sbjct: 6 PTPAQSKAINDRGENILVSASAGSGKTAVLVNRTIELIKEGQSIDRMLLVTFTDAAAKNM 65 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 ++ A + KI N D+ R + + + TIHA Sbjct: 66 RDKIR---------------AALQKIVQDSANPKDL---RDRMSNQINRLAAADISTIHA 107 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE---LKKAFYEI 195 FC +++++ ++ F + +E + L++E ++ + N EE K +F E+ Sbjct: 108 FCLKLIKRYYYLIDLDPQFRLLTDETERLLLQEDVWHEVSEELYRNAEEKVSGKASFSEL 167 Query: 196 -LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 L S+D D + L D+I L+L + K ++K Sbjct: 168 VLNFSSDRDDQGL-DDLI-----LRLYEIANAQPDPEKWLQK 203 >gi|170707635|ref|ZP_02898087.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0389] gi|170127410|gb|EDS96285.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0389] Length = 1241 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA Sbjct: 14 WTDDQWKAVVATGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +R+ E + K+ +P + K LL + T Sbjct: 74 QEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ + ++ F IA++ +++ L EE L + + F+E+ Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168 Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ ++D + L R L L ++ K ++K Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204 >gi|167635407|ref|ZP_02393721.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0442] gi|254740248|ref|ZP_05197940.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Kruger B] gi|167529235|gb|EDR91988.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0442] Length = 1241 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA Sbjct: 14 WTDDQWKAVVATGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +R+ E + K+ +P + K LL + T Sbjct: 74 QEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ + ++ F IA++ +++ L EE L + + F+E+ Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168 Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ ++D + L R L L ++ K ++K Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204 >gi|28379194|ref|NP_786086.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum WCFS1] gi|81630835|sp|Q88U41|ADDA_LACPL RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|28272032|emb|CAD64937.1| ATP-dependent nuclease, subunit A [Lactobacillus plantarum WCFS1] Length = 1249 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 19/222 (8%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 + + T S+Q + + + VSA+AGSGKT +L++R++R +LA + LL +T T A Sbjct: 3 EGTNYTPSQQAVIAQQGNNLLVSASAGSGKTTVLIERIMRKILAGTNIDQLLVVTFTNLA 62 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A M ++ I + I+++ P ++ S A L L G + Sbjct: 63 AKHMKQKLESQI-----------NKRISQLMTDNPAQTTASPAIRQLRQQLNLLGVANIS 111 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+ AFC ++Q++ ++ F + + LI + ++ + D + L Sbjct: 112 TLDAFCLRVIQRYYYVIDLDPVFRLLTDNTEGLLIRDQVWDSVREQLYDEDGTLFDLLT- 170 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 SND + L +R +L F S + K Sbjct: 171 -ANFSNDRSDDGL------SRLIFRLFDFAQSTPDPEGWLSK 205 >gi|52079565|ref|YP_078356.1| ATP-dependent deoxyribonuclease subunit A [Bacillus licheniformis ATCC 14580] gi|52784929|ref|YP_090758.1| AddA [Bacillus licheniformis ATCC 14580] gi|81609244|sp|Q65LJ9|ADDA_BACLD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|52002776|gb|AAU22718.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus licheniformis ATCC 14580] gi|52347431|gb|AAU40065.1| AddA [Bacillus licheniformis ATCC 14580] Length = 1230 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 85/222 (38%), Gaps = 34/222 (15%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74 + T + R V+A AGSGKT +LV+R++R + P LL +T T A+ Sbjct: 10 TWTDDQWKAIVSSGRDILVAAAAGSGKTAVLVERIIRKITDQERPVDVDRLLVVTFTNAS 69 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM HR+ E + K + P + + LL + Sbjct: 70 AAEMKHRIGEAL---------------EKELAENPGSLHLRRQLALL-------NKASIS 107 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+H+FC +++++ ++ F IAD+ + + L +E N + Sbjct: 108 TLHSFCLQVIRKYYYLIDVDPAFRIADQTEGELLGDEVLDELFEEEYKKGNPAFFELVDR 167 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +D D++ L+ ++ F S+ + Sbjct: 168 YTTDRHDLDLQHLVK---------RVYEFSRSHPDPEGWLHS 200 >gi|194467461|ref|ZP_03073448.1| recombination helicase AddA [Lactobacillus reuteri 100-23] gi|194454497|gb|EDX43394.1| recombination helicase AddA [Lactobacillus reuteri 100-23] Length = 1392 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 96/222 (43%), Gaps = 28/222 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T ++ +D + VSA+AGSGKT +LV R + L+ +L +T T AAA M Sbjct: 6 PTPAQSKAINDRGENILVSASAGSGKTAVLVNRTIELIKEGQSIDRMLLVTFTDAAAKNM 65 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 ++ A + KI N D+ R + + + TIHA Sbjct: 66 RDKIR---------------AALQKIVQDSANPKDL---RDRMSNQINRLAAADISTIHA 107 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE---LKKAFYEI 195 FC +++++ ++ F + +E + L++E ++ + N EE + +F E+ Sbjct: 108 FCLKLIKRYYYLIDLDPQFRLLTDETERLLLQEDVWHEVSEELYKNAEEKVPGRASFSEL 167 Query: 196 -LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 L S+D D + L D+I L+L + K ++K Sbjct: 168 VLNFSSDRDDQGL-DDLI-----LRLYEIANAQPDPEKWLQK 203 >gi|30261249|ref|NP_843626.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Ames] gi|47526411|ref|YP_017760.1| ATP-dependent nuclease subunit A [Bacillus anthracis str. 'Ames Ancestor'] gi|49184081|ref|YP_027333.1| ATP-dependent nuclease subunit A [Bacillus anthracis str. Sterne] gi|65318520|ref|ZP_00391479.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Bacillus anthracis str. A2012] gi|165873114|ref|ZP_02217732.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0488] gi|167640214|ref|ZP_02398480.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0193] gi|170688037|ref|ZP_02879249.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0465] gi|177655492|ref|ZP_02936935.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0174] gi|190566724|ref|ZP_03019641.1| ATP-dependent nuclease, subunit A [Bacillus anthracis Tsiankovskii-I] gi|227816013|ref|YP_002816022.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. CDC 684] gi|229601554|ref|YP_002865672.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0248] gi|254682690|ref|ZP_05146551.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. CNEVA-9066] gi|254734108|ref|ZP_05191821.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Western North America USA6153] gi|254753588|ref|ZP_05205624.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Vollum] gi|254758685|ref|ZP_05210712.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Australia 94] gi|81583096|sp|Q81TW1|ADDA_BACAN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|30254863|gb|AAP25112.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Ames] gi|47501559|gb|AAT30235.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. 'Ames Ancestor'] gi|49178008|gb|AAT53384.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. Sterne] gi|164711168|gb|EDR16727.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0488] gi|167511815|gb|EDR87195.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0193] gi|170667932|gb|EDT18683.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0465] gi|172080091|gb|EDT65187.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0174] gi|190562276|gb|EDV16244.1| ATP-dependent nuclease, subunit A [Bacillus anthracis Tsiankovskii-I] gi|227003890|gb|ACP13633.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. CDC 684] gi|229265962|gb|ACQ47599.1| ATP-dependent nuclease, subunit A [Bacillus anthracis str. A0248] Length = 1241 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA Sbjct: 14 WTDDQWKAVVATGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +R+ E + K+ +P + K LL + T Sbjct: 74 QEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ + ++ F IA++ +++ L EE L + + F+E+ Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168 Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ ++D + L R L L ++ K ++K Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204 >gi|217958719|ref|YP_002337267.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH187] gi|251764503|sp|B7HZR5|ADDA_BACC7 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|217066718|gb|ACJ80968.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH187] Length = 1241 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA Sbjct: 14 WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +R+ E + K+ +P + K LL + T Sbjct: 74 QEMKNRIGEAL---------------EKVLIDEPGSQHIRKQLSLL-------NKASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ + ++ F IA++ +++ L EE L + + F+E+ Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168 Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ ++D + L R L L ++ K ++K Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204 >gi|206976508|ref|ZP_03237414.1| ATP-dependent nuclease, subunit A [Bacillus cereus H3081.97] gi|222094863|ref|YP_002528923.1| ATP-dependent nuclease, subunit a [Bacillus cereus Q1] gi|251764505|sp|B9ITE9|ADDA_BACCQ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|206745191|gb|EDZ56592.1| ATP-dependent nuclease, subunit A [Bacillus cereus H3081.97] gi|221238921|gb|ACM11631.1| ATP-dependent nuclease, subunit A [Bacillus cereus Q1] Length = 1241 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA Sbjct: 14 WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +R+ E + K+ +P + K LL + T Sbjct: 74 QEMKNRIGEAL---------------EKVLIDEPGSQHIRKQLSLL-------NKASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ + ++ F IA++ +++ L EE L + + F+E+ Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168 Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ ++D + L R L L ++ K ++K Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204 >gi|324325258|gb|ADY20518.1| ATP-dependent nuclease, subunit A [Bacillus thuringiensis serovar finitimus YBT-020] Length = 1241 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA Sbjct: 14 WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +R+ E + K+ +P + K LL + T Sbjct: 74 QEMKNRIGEAL---------------EKVLIDEPGSQHIRKQLSLL-------NKASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ + ++ F IA++ +++ L EE L + + F+E+ Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168 Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ ++D + L R L L ++ K ++K Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204 >gi|319646646|ref|ZP_08000875.1| AddA protein [Bacillus sp. BT1B_CT2] gi|317391234|gb|EFV72032.1| AddA protein [Bacillus sp. BT1B_CT2] Length = 1230 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 85/222 (38%), Gaps = 34/222 (15%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74 + T + R V+A AGSGKT +LV+R++R + P LL +T T A+ Sbjct: 10 TWTDDQWKAIVSSGRDILVAAAAGSGKTAVLVERIIRKITDQERPVDVDRLLVVTFTNAS 69 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM HR+ E + K + P + + LL + Sbjct: 70 AAEMKHRIGEAL---------------EKELAENPGSLHLRRQLALL-------NKASIS 107 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+H+FC +++++ ++ F IAD+ + + L +E N + Sbjct: 108 TLHSFCLQVIRKYYYLIDVDPAFRIADQTEGELLGDEVLDELFEEEYKKGNPAFFELVDR 167 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +D D++ L+ ++ F S+ + Sbjct: 168 YTTDRHDLDLQHLVK---------RVYEFSRSHPDPEGWLHS 200 >gi|227891362|ref|ZP_04009167.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus salivarius ATCC 11741] gi|227866940|gb|EEJ74361.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus salivarius ATCC 11741] Length = 1253 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 29/221 (13%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 + T ++Q D ++ V+A+AGSGKT +LV+RV+ + LL +T T+AA Sbjct: 8 NGFKFTPAQQKAIEDTGKNILVAASAGSGKTRVLVERVINKIKQGVSIDELLVVTFTEAA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ + K+ + +D + + +T L + Sbjct: 68 AKEMKERIQIALR-------------------KELSTADSEEEKRRYLTQLSKLNVANIS 108 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS-IMLDNNEELKKAFY 193 T+HAFC I++Q+ N+ F + E+ L++E L + E + Sbjct: 109 TLHAFCLQIIKQYYYVINLDPMFRMLTEDTEVALLQENVWDDLREKWYSKKSPEFENLVV 168 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 ND+ + L+ +K F + + + Sbjct: 169 NFSSDRNDDGLSELV---------MKTYQFANANPNPDEWL 200 >gi|229541419|ref|ZP_04430479.1| recombination helicase AddA [Bacillus coagulans 36D1] gi|229325839|gb|EEN91514.1| recombination helicase AddA [Bacillus coagulans 36D1] Length = 1243 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 95/223 (42%), Gaps = 33/223 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + + V+A AGSGKT +LV+R+++ +L P LL +T T AAA Sbjct: 14 WTDDQWKAVMAKGQDILVAAAAGSGKTAVLVERIIQKILDEHDPLDIDELLIVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM HR+ + I + +P+ + K LL + T Sbjct: 74 AEMRHRIGK---------------AIEEAISSRPDSHHLRKQLSLL-------NKAPIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +HAFC +++++ +I F IAD+ +++ L +E + +L FY Sbjct: 112 LHAFCLEVIRKYYYLIDIDPGFRIADDTEAELLRDEVLDDLFETEYAKAGNDL---FYRT 168 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 ++ +++ + + +I KL F S+ ++K + Sbjct: 169 VDTFSNDRSDDELQHLIR-----KLYDFSRSHPDPSAWLDKMV 206 >gi|52144188|ref|YP_082640.1| ATP-dependent nuclease, subunit A [Bacillus cereus E33L] gi|81689028|sp|Q63EM2|ADDA_BACCZ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|51977657|gb|AAU19207.1| ATP-dependent nuclease, subunit A [Bacillus cereus E33L] Length = 1241 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 35/226 (15%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHT 71 + T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T Sbjct: 10 EGSQWTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFT 69 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAA EM +R+ E + K+ +P + K LL Sbjct: 70 NAAAQEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKA 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + TIH+FC +++ + ++ F IA++ +++ L EE L + + Sbjct: 108 SISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI--- 164 Query: 192 FYEILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 F+E+++ ++D + L R L L ++ K ++K Sbjct: 165 FFELVDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204 >gi|196037643|ref|ZP_03104954.1| ATP-dependent nuclease, subunit A [Bacillus cereus NVH0597-99] gi|196031885|gb|EDX70481.1| ATP-dependent nuclease, subunit A [Bacillus cereus NVH0597-99] Length = 1241 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 97/233 (41%), Gaps = 35/233 (15%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---ST 64 + + + T + R V+A AGSGKT +LV+R+++ ++ +P Sbjct: 3 ENWPKKTEGSQWTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDR 62 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 LL +T T AAA EM +R+ E + K+ +P + K LL Sbjct: 63 LLVVTFTNAAAQEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL--- 104 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 + TIH+FC +++ + ++ F IA++ +++ L EE L Sbjct: 105 ----NKASISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIE 160 Query: 185 NEELKKAFYEILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + F+E+++ ++D + L R L L ++ K ++K Sbjct: 161 DNTI---FFELVDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204 >gi|218233217|ref|YP_002365926.1| ATP-dependent nuclease, subunit A [Bacillus cereus B4264] gi|251764502|sp|B7HGP9|ADDA_BACC4 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|218161174|gb|ACK61166.1| ATP-dependent nuclease, subunit A [Bacillus cereus B4264] Length = 1241 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 35/226 (15%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHT 71 + T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T Sbjct: 10 EGSQWTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFT 69 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAA EM +R+ E + K+ +P + K LL Sbjct: 70 NAAAQEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKA 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + TIH+FC +++ + ++ F IA++ +++ L EE L + + Sbjct: 108 SISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI--- 164 Query: 192 FYEILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 F+E+++ ++D + L R L L ++ K ++K Sbjct: 165 FFELVDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204 >gi|157691776|ref|YP_001486238.1| ATP-dependent deoxyribonuclease subunit A [Bacillus pumilus SAFR-032] gi|251764506|sp|A8FBR1|ADDA_BACP2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|157680534|gb|ABV61678.1| ATP-dependent deoxyribonuclease subunit A [Bacillus pumilus SAFR-032] Length = 1234 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 34/224 (15%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74 + T + + V+A AGSGKT +LV+R++R + HP LL +T T A+ Sbjct: 10 TWTDDQWEAIVSEGQDILVAAAAGSGKTAVLVERLIRKMTRPEHPVDVDRLLVVTFTNAS 69 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM HR+ E + K K P M + L+ + Sbjct: 70 AAEMKHRITEAL---------------EKELAKNPGSLHMRRQLSLM-------NRANIS 107 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+H+FC +++ F E ++ F +AD+ + + L +E L + D + K +F+E Sbjct: 108 TLHSFCLQVLRTFYYEIDLDPGFRLADQTEGELLGDE----VLDELFEDEYKAGKPSFFE 163 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +++ + + + ++ ++ F S+ + + L Sbjct: 164 LVDRYTSDRHDLDLQWLVK-----RIYDFSRSHPSPEQWMRAFL 202 >gi|296332487|ref|ZP_06874948.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673768|ref|YP_003865440.1| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp. spizizenii str. W23] gi|296150405|gb|EFG91293.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412012|gb|ADM37131.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. spizizenii str. W23] Length = 1234 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 99/224 (44%), Gaps = 34/224 (15%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74 + T + + V+A AGSGKT +LV+R++R + A +P LL +T T A+ Sbjct: 10 TWTDDQWNAIVSTGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDQLLVVTFTNAS 69 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM HR+ + + K K+P + + LL + Sbjct: 70 AAEMKHRIADAL---------------EKELVKRPGSLHIRRQLSLL-------NRASIS 107 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+H+FC +++++ ++ F IAD+ + + L +E L + D + +KAF+E Sbjct: 108 TLHSFCLQVLKKYYYLIDLDPGFRIADQTEGELLGDE----VLDELFEDEYAKGEKAFFE 163 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +++ + + + ++ ++ + S+ +E + Sbjct: 164 LVDRYTTDRHDLDLQFLVK-----QVYEYSRSHPNPEAWLESFV 202 >gi|291548281|emb|CBL21389.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Ruminococcus sp. SR1/5] Length = 296 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 86/228 (37%), Gaps = 34/228 (14%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---LANAHPSTLLCLTHTKA 73 + T+ ++ + + R+ VSA AGSGKT +LVQR+L + L LL +T T+A Sbjct: 3 VKWTEEQKKVITLRDRNILVSAAAGSGKTAVLVQRILSKIMDPLKPVDIDRLLIMTFTRA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + + + P+ + + L+ T ++ Sbjct: 63 AAGEMRERIERGL---------------DQALAEDPDNEHLQRQMTLIHTA-------QI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TI FC +++ + + + ADE + K L E+ K + + Sbjct: 101 TTIDGFCAYVIRNYFHLIGLDPGYRTADEGELKLLQEDVLKELFEDHYAERKADFTAFVE 160 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 DE + L+L S W K ++ + + Sbjct: 161 CYAPGKTDEGL---------KEHVLELYNAAMSNPWPEKWLDSCVENY 199 >gi|30019293|ref|NP_830924.1| ATP-dependent nuclease subunit A [Bacillus cereus ATCC 14579] gi|296501840|ref|YP_003663540.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis BMB171] gi|81580749|sp|Q81GP9|ADDA_BACCR RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|29894836|gb|AAP08125.1| ATP-dependent nuclease subunit A [Bacillus cereus ATCC 14579] gi|296322892|gb|ADH05820.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis BMB171] Length = 1241 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA Sbjct: 14 WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +R+ E + K+ +P + K LL + T Sbjct: 74 QEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ + ++ F IA++ +++ L EE L + + F+E+ Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168 Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ ++D + L R L L ++ K ++K Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204 >gi|326938868|gb|AEA14764.1| ATP-dependent nuclease subunit A [Bacillus thuringiensis serovar chinensis CT-43] Length = 1241 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA Sbjct: 14 WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +R+ E + K+ +P + K LL + T Sbjct: 74 QEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ + ++ F IA++ +++ L EE L + + F+E+ Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168 Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ ++D + L R L L ++ K ++K Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204 >gi|118476726|ref|YP_893877.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bacillus thuringiensis str. Al Hakam] gi|225863093|ref|YP_002748471.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB102] gi|251764499|sp|A0RAX7|ADDA_BACAH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|118415951|gb|ABK84370.1| DNA helicase/exodeoxyribonuclease V, subunit A [Bacillus thuringiensis str. Al Hakam] gi|225787430|gb|ACO27647.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB102] Length = 1241 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA Sbjct: 14 WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +R+ E + K+ +P + K LL + T Sbjct: 74 QEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ + ++ F IA++ +++ L EE L + + F+E+ Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168 Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ ++D + L R L L ++ K ++K Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204 >gi|325912627|ref|ZP_08175010.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 60-B] gi|325478048|gb|EGC81177.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 60-B] Length = 1206 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 35/235 (14%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ I + L L L + T Sbjct: 61 SEMKLRIKNAIKNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++++F N+ +F+I ++ L++E +N ++ FY Sbjct: 99 IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157 Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239 + D ++E S ++ N A +L FF+ + + II +LW Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211 >gi|90962576|ref|YP_536492.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius UCC118] gi|122448460|sp|Q1WRS0|ADDA_LACS1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|90821770|gb|ABE00409.1| ATP-dependent nuclease subunit A [Lactobacillus salivarius UCC118] Length = 1248 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 29/221 (13%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 + T ++Q D ++ V+A+AGSGKT +LV+RV+ + LL +T T+AA Sbjct: 3 NGFKFTPAQQKAIEDTGKNILVAASAGSGKTRVLVERVINKIKQGVSIDELLVVTFTEAA 62 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ + K+ + +D + + +T L + Sbjct: 63 AKEMKERIQIALR-------------------KELSTADSEEEKRRYLTQLSKLNVANIS 103 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS-IMLDNNEELKKAFY 193 T+HAFC I++Q+ N+ F + E+ L++E L + E + Sbjct: 104 TLHAFCLQIIKQYYYVINLDPMFRMLTEDTEVALLQENVWDDLREKWYSKKSPEFENLVV 163 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 ND+ + L+ +K F + + + Sbjct: 164 NFSSDRNDDGLSELV---------MKTYQFANANPNPDEWL 195 >gi|218902338|ref|YP_002450172.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH820] gi|251764500|sp|B7JDU4|ADDA_BACC0 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|218537459|gb|ACK89857.1| ATP-dependent nuclease, subunit A [Bacillus cereus AH820] Length = 1240 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA Sbjct: 14 WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +R+ E + K+ +P + K LL + T Sbjct: 74 QEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ + ++ F IA++ +++ L EE L + + F+E+ Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 168 Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ ++D + L R L L ++ K ++K Sbjct: 169 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204 >gi|238916498|ref|YP_002930015.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium eligens ATCC 27750] gi|238871858|gb|ACR71568.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Eubacterium eligens ATCC 27750] Length = 1220 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 95/224 (42%), Gaps = 34/224 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75 T +++ + VSA AGSGKT +LV+R++ ++ N L+ +T TKAAA Sbjct: 7 WTPAQKSAIDIRDCNVLVSAAAGSGKTAVLVERIISMITDPDKNIDIDRLVVVTFTKAAA 66 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 A+M ++ + + + + + P ++ + LL ++ T Sbjct: 67 AQMKDKIRKALDS---------------MLDENPGDVNLLRQITLL-------NNAQITT 104 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC I++ E N+ F I DE + K + + + L + +EE F+ + Sbjct: 105 IDSFCLWIIRNHFPEVNLDPGFRIMDEGEKKLIENDVLEDVLEEFYAEADEE----FFNL 160 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 ++ ++ + II K+ F S W + ++ + Sbjct: 161 VDAFGMGRDDSGLVSIID-----KIYRFSRSNPWIDEWFDECML 199 >gi|228913817|ref|ZP_04077442.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845756|gb|EEM90782.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 1240 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 35/222 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA Sbjct: 13 WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAA 72 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +R+ E + K+ +P + K LL + T Sbjct: 73 QEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKASIST 110 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ + ++ F IA++ +++ L EE L + + F+E+ Sbjct: 111 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI---FFEL 167 Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ ++D + L R L L ++ K ++K Sbjct: 168 VDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 203 >gi|259500614|ref|ZP_05743516.1| ATP-dependent exonuclease subunit A [Lactobacillus iners DSM 13335] gi|302191303|ref|ZP_07267557.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus iners AB-1] gi|259167998|gb|EEW52493.1| ATP-dependent exonuclease subunit A [Lactobacillus iners DSM 13335] Length = 1206 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 35/235 (14%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ I + L L L + T Sbjct: 61 SEMKLRIKNAIKNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++++F N+ +F+I ++ L++E +N ++ FY Sbjct: 99 IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157 Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239 + D ++E S ++ N A +L FF+ + + II +LW Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211 >gi|325912158|ref|ZP_08174556.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 143-D] gi|325476108|gb|EGC79276.1| ATP-dependent nuclease subunit A [Lactobacillus iners UPII 143-D] Length = 1206 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 35/235 (14%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ I + L L L + T Sbjct: 61 SEMKLRIKNAIKNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++++F N+ +F+I ++ L++E +N ++ FY Sbjct: 99 IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157 Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239 + D ++E S ++ N A +L FF+ + + II +LW Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211 >gi|312871743|ref|ZP_07731831.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 3008A-a] gi|311092685|gb|EFQ51041.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 3008A-a] Length = 1206 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 97/235 (41%), Gaps = 35/235 (14%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ I + L L L + T Sbjct: 61 SEMKLRIKNAIKNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++++F N+ +F+I ++ L++E +N ++ FY Sbjct: 99 IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157 Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239 + D ++E S ++ N A KL FF+ + + II +LW Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKKLDFFYQIDINKNDIISSNLW 211 >gi|312874236|ref|ZP_07734270.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2052A-d] gi|311090306|gb|EFQ48716.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2052A-d] Length = 1206 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 35/235 (14%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ I + L L L + T Sbjct: 61 SEMKLRIKNAIKNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++++F N+ +F+I ++ L++E +N ++ FY Sbjct: 99 IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157 Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239 + D ++E S ++ N A +L FF+ + + II +LW Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211 >gi|312875638|ref|ZP_07735639.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2053A-b] gi|311088892|gb|EFQ47335.1| ATP-dependent nuclease subunit A [Lactobacillus iners LEAF 2053A-b] Length = 1206 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 35/235 (14%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ I + L L L + T Sbjct: 61 SEMKLRIKNAIKNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++++F N+ +F+I ++ L++E +N ++ FY Sbjct: 99 IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157 Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239 + D ++E S ++ N A +L FF+ + + II +LW Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211 >gi|229828348|ref|ZP_04454417.1| hypothetical protein GCWU000342_00406 [Shuttleworthia satelles DSM 14600] gi|229792942|gb|EEP29056.1| hypothetical protein GCWU000342_00406 [Shuttleworthia satelles DSM 14600] Length = 1315 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 102/220 (46%), Gaps = 23/220 (10%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T ++ + R VSA AGSGKT +LV+R++R+L P LL +T T+AAA Sbjct: 6 WTPEQRQVIRARDRDLLVSAAAGSGKTAVLVERIIRMLTDPDAPLDVDQLLVVTFTRAAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM ++ I + + +++ +K S + + L+ + ++ T Sbjct: 66 HEMKEKIRRAIQEAVNEA----RSQLDPTDRQKALLSHLQRQLTLVHSA-------QITT 114 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC +++ E ++ F IA+E + + + +E + +M ++ E +AF ++ Sbjct: 115 IDSFCAYVVRNHFNEIDLEPDFRIAEEGEIRLIAQE----VMDQLMDEHYEMEDQAFIDL 170 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 +++ + ++D++ + + + W + ++ Sbjct: 171 VDLYARRGKDDALADML-----MSIYGTANADPWPMEWLD 205 >gi|194014992|ref|ZP_03053609.1| recombination helicase AddA [Bacillus pumilus ATCC 7061] gi|194014018|gb|EDW23583.1| recombination helicase AddA [Bacillus pumilus ATCC 7061] Length = 1232 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 34/224 (15%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74 + T + + V+A AGSGKT +LV+R++R + HP LL +T T A+ Sbjct: 10 TWTDDQWEAIVSEGQDILVAAAAGSGKTAVLVERLIRKMTRPEHPVDVDRLLVVTFTNAS 69 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM HR+ E + K K P M + L+ + Sbjct: 70 AAEMKHRITEAL---------------EKELAKNPGSLHMRRQLSLM-------NRANIS 107 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+H+FC +++ F E ++ F +AD+ + + L +E L + D + K +F+E Sbjct: 108 TLHSFCLQVLRTFYYEIDLDPGFRLADQTEGELLGDE----VLDELFEDEYKAGKPSFFE 163 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +++ + + + ++ ++ F S+ + + L Sbjct: 164 LVDRYTSDRHDLDLQWLVK-----RIYEFSRSHPSPEQWMRAFL 202 >gi|257869454|ref|ZP_05649107.1| UvrD/REP helicase [Enterococcus gallinarum EG2] gi|257803618|gb|EEV32440.1| UvrD/REP helicase [Enterococcus gallinarum EG2] Length = 1226 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 93/218 (42%), Gaps = 27/218 (12%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + T ++ D + VSA+AGSGKT +LV+RV+ L A + LL +T T+AAA E Sbjct: 12 TFTDTQWQAIFDKGDNLLVSASAGSGKTTVLVRRVIEKLKAGSQIDELLIVTFTEAAARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ + N+ + R + L+ + T+H Sbjct: 72 MKERIQVALQTA-------------------INQESQEQKRQHFVRQLQLLPTANISTLH 112 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFC ++++F ++ F + +E L++E + L + N+E AF+ + E Sbjct: 113 AFCLTVIRRFYYLIDLDPGFRMLTDETEILLLKEEIWTQLRDAHYEANDE---AFFRLTE 169 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 + + + D+I L L F + K ++ Sbjct: 170 NFASDRSDETVGDLI-----LSLYDFARANPDPEKWLD 202 >gi|227543760|ref|ZP_03973809.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri CF48-3A] gi|300908827|ref|ZP_07126290.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri SD2112] gi|227186259|gb|EEI66330.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus reuteri CF48-3A] gi|300894234|gb|EFK87592.1| ATP-dependent nuclease subunit A [Lactobacillus reuteri SD2112] Length = 1392 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 97/222 (43%), Gaps = 28/222 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T ++ +D + VSA+AGSGKT +LV R + L+ +L +T T AAA M Sbjct: 6 PTPAQSKAINDRGENILVSASAGSGKTAVLVNRTIELIKEGQSIDRMLLVTFTDAAAKNM 65 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 ++ A + KI N D+ R + + + TIHA Sbjct: 66 RDKIR---------------AALQKIVQDSANPKDL---RDRMSNQINRLVAADISTIHA 107 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE---LKKAFYEI 195 FC +++++ N+ F + +E + L++E ++ + N EE + +F E+ Sbjct: 108 FCLKLIKRYYYLINLDPQFRLLTDETERLLLQEDVWHEVSEELYKNAEEKVPGRASFSEL 167 Query: 196 -LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 L S+D D + L +D+I L+L + K ++K Sbjct: 168 VLNFSSDRDDQGL-NDLI-----LRLYEIANAQPDPEKWLQK 203 >gi|163939035|ref|YP_001643919.1| recombination helicase AddA [Bacillus weihenstephanensis KBAB4] gi|251764507|sp|A9VJ02|ADDA_BACWK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|163861232|gb|ABY42291.1| Recombination helicase AddA [Bacillus weihenstephanensis KBAB4] Length = 1241 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 35/222 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T AAA Sbjct: 14 WTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIIREENPVDVDRLLVVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +R+ E + K+ P + K LL + T Sbjct: 74 QEMKNRIGEAL---------------EKVLIDGPGSQHIRKQLSLL-------NKASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194 IH+FC +++ + ++ F IA++ +++ L EE L +++N + Sbjct: 112 IHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNSIFFELVDR 171 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +D+D++ +I L L ++ K ++K Sbjct: 172 YTSDRSDDDLQRMI---------LALHTESRAHPNPEKWLDK 204 >gi|116493558|ref|YP_805293.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus pentosaceus ATCC 25745] gi|122264978|sp|Q03D71|ADDA_PEDPA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116103708|gb|ABJ68851.1| DNA helicase/exodeoxyribonuclease V, subunit A [Pediococcus pentosaceus ATCC 25745] Length = 1235 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 53/219 (24%), Positives = 99/219 (45%), Gaps = 31/219 (14%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T S++ + + VSA+AGSGKT +LV+RV++ ++ LL +T T+AAA+EM Sbjct: 7 TLSQKQAINSSGHNILVSASAGSGKTSVLVERVIQKIINGEDVDRLLVVTFTEAAASEMK 66 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ I KK N+ + ++ L + T+HAF Sbjct: 67 ERIRAAIV-------------------KKINEVSDIELQNHFSMQLNKLNNANISTLHAF 107 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY--EILE 197 C +I++ + ++ F I D +S +L++E+ + L + + +E+ K A Sbjct: 108 CMSIIRNYYYIIDLDPTFRIMDPTES-ELLKESVWADLREELYERDEDGKFALLTRNFSS 166 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +DE ++ LI L+L F + + +++ Sbjct: 167 DRSDEGLQDLI---------LELFEFSNANPDPQAWLQQ 196 >gi|328552685|gb|AEB23177.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus amyloliquefaciens TA208] Length = 1234 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 34/223 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R++R + A P LL +T T A+A Sbjct: 11 WTDDQWSAIVSSGRDILVAAAAGSGKTAVLVERMIRKITAEEEPVDVDRLLVVTFTNASA 70 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM HR+ E + K K P + + LL + T Sbjct: 71 AEMKHRIAEAL---------------EKELAKNPGSLHIRRQLSLL-------NRASIST 108 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++++ ++ F +AD+ + + L +E L + D + +AF+E+ Sbjct: 109 LHSFCLQVLKKYYYMIDLDPGFRMADQTEGELLGDE----VLDELFEDEYAKGNQAFFEL 164 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 ++ + + + D++ ++ + S+ ++ + Sbjct: 165 VDRYTTDRHDLDLQDLVK-----RVYEYSRSHPDPEAWLKSFV 202 >gi|257887557|ref|ZP_05667210.1| UvrD/REP helicase [Enterococcus faecium 1,141,733] gi|257823611|gb|EEV50543.1| UvrD/REP helicase [Enterococcus faecium 1,141,733] Length = 1240 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T + D + VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM Sbjct: 13 FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ E + + + + R L + T+HA Sbjct: 73 KERIQEALQEAVNSESDPVR-------------------RQHFTKQLVLLPTANISTLHA 113 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC +++++ +I F + +E L++E L + N+E + F + Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 SND + L + + S L F + +K +E+ Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPKKWLEQ 203 >gi|293378777|ref|ZP_06624934.1| ATP-dependent nuclease subunit A [Enterococcus faecium PC4.1] gi|292642570|gb|EFF60723.1| ATP-dependent nuclease subunit A [Enterococcus faecium PC4.1] Length = 1240 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T + D + VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM Sbjct: 13 FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ E + + + + R L + T+HA Sbjct: 73 KERIQEALQEAVNSESDPVR-------------------RQHFTKQLVLLPTANISTLHA 113 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC +++++ +I F + +E L++E L + N+E + F + Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 SND + L + + S L F + +K +E+ Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPKKWLEQ 203 >gi|293569779|ref|ZP_06680866.1| recombination helicase AddA [Enterococcus faecium E1071] gi|291587527|gb|EFF19404.1| recombination helicase AddA [Enterococcus faecium E1071] Length = 1240 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T + D + VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM Sbjct: 13 FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ E + + + + R L + T+HA Sbjct: 73 KERIQEALQEAVNSESDPVR-------------------RQHFTKQLVLLPTANISTLHA 113 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC +++++ +I F + +E L++E L + N+E + F + Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 SND + L + + S L F + +K +E+ Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPKKWLEQ 203 >gi|227551328|ref|ZP_03981377.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecium TX1330] gi|257896051|ref|ZP_05675704.1| UvrD/REP helicase [Enterococcus faecium Com12] gi|227179539|gb|EEI60511.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecium TX1330] gi|257832616|gb|EEV59037.1| UvrD/REP helicase [Enterococcus faecium Com12] Length = 1240 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T + D + VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM Sbjct: 13 FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ E + + + + R L + T+HA Sbjct: 73 KERIQEALQEAVNSESDPVR-------------------RQHFTKQLVLLPTANISTLHA 113 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC +++++ +I F + +E L++E L + N+E + F + Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 SND + L + + S L F + +K +E+ Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPKKWLEQ 203 >gi|69246355|ref|ZP_00603911.1| UvrD/REP helicase [Enterococcus faecium DO] gi|258616338|ref|ZP_05714108.1| exonuclease RexA [Enterococcus faecium DO] gi|68195308|gb|EAN09759.1| UvrD/REP helicase [Enterococcus faecium DO] Length = 1240 Score = 168 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T + D + VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM Sbjct: 13 FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ E + + + + R L + T+HA Sbjct: 73 KERIQEALQEAVNSESDPVR-------------------RQHFTKQLVLLPTANISTLHA 113 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC +++++ +I F + +E L++E L + N+E + F + Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 SND + L + + S L F + +K +E+ Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPKKWLEQ 203 >gi|297584273|ref|YP_003700053.1| recombination helicase AddA [Bacillus selenitireducens MLS10] gi|297142730|gb|ADH99487.1| recombination helicase AddA [Bacillus selenitireducens MLS10] Length = 1244 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 35/221 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + S + V+A AGSGKT +LV+R++R + +P LL +T T AAA Sbjct: 12 WTDDQWRAISAEGNNLLVAAAAGSGKTAVLVERIIRKITDEENPADLDRLLIVTFTNAAA 71 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM HR+ E + ++P + + +LL + T Sbjct: 72 QEMRHRIGEAL---------------EDKISEQPRSLHLRRQLNLLHKAP-------IST 109 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +I++ F +I F I DE + L +E + N + FY++ Sbjct: 110 LHSFCMSIVRDFYYVTDIDPSFRILDETEGVLLRDEVLEELFEEAYSSKNPDG---FYDM 166 Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 +E SND E L +++ + F S+ + ++ Sbjct: 167 VERFSNDRSDEGLKQVLLA------VYHFSLSHPKPFEWLQ 201 >gi|142440|gb|AAA22201.1| ATP-dependent nuclease [Bacillus subtilis] gi|2226192|emb|CAA74482.1| ATP-dependent nuclease [Bacillus subtilis subsp. subtilis str. 168] Length = 1232 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 99/224 (44%), Gaps = 34/224 (15%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74 + T + + V+A AGSGKT +LV+R++R + A +P LL +T T A+ Sbjct: 10 TWTDDQWNAIVSTGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNAS 69 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM HR+ E + K ++P + + LL + Sbjct: 70 AAEMKHRIAEAL---------------EKELVQRPGSLHIRRQLSLL-------NRASIS 107 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+H+FC +++++ ++ F IAD+ + + + +E L + D + +KAF+E Sbjct: 108 TLHSFCLQVLKKYYYLIDLDPGFRIADQTEGELIGDE----VLDELFEDEYAKGEKAFFE 163 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +++ + + + ++ ++ + S+ +E + Sbjct: 164 LVDRYTTDRHDLDLQFLVK-----QVYEYSRSHPNPEAWLESFV 202 >gi|295693034|ref|YP_003601644.1| ATP-dependent helicase/nuclease subunit a [Lactobacillus crispatus ST1] gi|295031140|emb|CBL50619.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus crispatus ST1] Length = 1202 Score = 168 bits (427), Expect = 5e-40, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 93/222 (41%), Gaps = 31/222 (13%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + TK +Q D VSA+AGSGKT +LV+RVLR +L+ LL +T TKAAA Sbjct: 1 MSQFTKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLREILSGTQVDELLVITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + LSAE+ K R L L + T Sbjct: 61 EEMKTRIKQ-----------ALSAELAKPGSN----------RRYLREQLNQVDTANIST 99 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I AFC ++ +F N+ F+I ++ L++E + L+ + + FY+ Sbjct: 100 IDAFCLEVIHRFYYSVNLDPSFSILTDDTQAALLKERALREIEGEFLEEKDVNFRHFYD- 158 Query: 196 LEISNDEDIETLISDIISNRT-ALKLIFFFFSYLWRRKIIEK 236 + D D + S R L L F + R ++K Sbjct: 159 -NFAGDRDAD-------SPRDLLLDLYDFAMAKPEYRSWLKK 192 >gi|196044179|ref|ZP_03111415.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB108] gi|196024818|gb|EDX63489.1| ATP-dependent nuclease, subunit A [Bacillus cereus 03BB108] Length = 1241 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 35/226 (15%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHT 71 + T + R V+A AGSGKT +LV+R+++ ++ +P LL +T T Sbjct: 10 EGSQWTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDHLLVVTFT 69 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAA EM +R+ E + K+ +P + K LL Sbjct: 70 NAAAQEMKNRIGEAL---------------EKVLIDEPGSQHVRKQLSLL-------NKA 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + TIH+FC +++ + ++ F IA++ +++ L EE L + + Sbjct: 108 SISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIEDNTI--- 164 Query: 192 FYEILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 F+E+++ ++D + L R L L ++ K ++K Sbjct: 165 FFELVDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 204 >gi|221308901|ref|ZP_03590748.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. subtilis str. 168] gi|221313225|ref|ZP_03595030.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318148|ref|ZP_03599442.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. subtilis str. JH642] gi|221322423|ref|ZP_03603717.1| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. subtilis str. SMY] gi|255767243|ref|NP_388944.2| ATP-dependent deoxyribonuclease subunit A [Bacillus subtilis subsp. subtilis str. 168] gi|239938590|sp|P23478|ADDA_BACSU RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|225184870|emb|CAB12903.2| ATP-dependent deoxyribonuclease (subunit A) [Bacillus subtilis subsp. subtilis str. 168] Length = 1232 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 99/224 (44%), Gaps = 34/224 (15%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74 + T + + V+A AGSGKT +LV+R++R + A +P LL +T T A+ Sbjct: 10 TWTDDQWNAIVSTGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNAS 69 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM HR+ E + K ++P + + LL + Sbjct: 70 AAEMKHRIAEAL---------------EKELVQRPGSLHIRRQLSLL-------NRASIS 107 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+H+FC +++++ ++ F IAD+ + + + +E L + D + +KAF+E Sbjct: 108 TLHSFCLQVLKKYYYLIDLDPGFRIADQTEGELIGDE----VLDELFEDEYAKGEKAFFE 163 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +++ + + + ++ ++ + S+ +E + Sbjct: 164 LVDRYTTDRHDLDLQFLVK-----QVYEYSRSHPNPEAWLESFV 202 >gi|114566673|ref|YP_753827.1| ATP-dependent exoDNAse subunit beta [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318286|sp|Q0AXU8|ADDA_SYNWW RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|114337608|gb|ABI68456.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 1236 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 56/228 (24%), Positives = 96/228 (42%), Gaps = 32/228 (14%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 + T ++ + + V+A AGSGKT +LV+R+++L+L + LL +T T+AA Sbjct: 1 MAHWTIEQEEAINARNSNLLVAAAAGSGKTTVLVERIIQLVLRDRIDIDRLLIVTFTQAA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ +A K K + + +LL + Sbjct: 61 AGEMRERI---------------NAAFFKELEKGREDGHLRRQLYLL-------NRSSIS 98 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TIHAFC +++Q NI HF IAD +++ + E + L N+ Sbjct: 99 TIHAFCSDVVRQHFHLVNIDPHFRIADSTETELIKMEVLEELLDGEYEKGNDGFLDLVEA 158 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 +D+ +E LI L+L F S+ +E+ + ++A Sbjct: 159 FGSNKDDKPLEALI---------LRLHSFIQSHPQPLSWLEEKIDNLA 197 >gi|154685514|ref|YP_001420675.1| AddA [Bacillus amyloliquefaciens FZB42] gi|251764498|sp|A7Z368|ADDA_BACA2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|154351365|gb|ABS73444.1| AddA [Bacillus amyloliquefaciens FZB42] Length = 1235 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 34/223 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R++R + A P LL +T T A+A Sbjct: 12 WTDDQWSAIVSSGRDILVAAAAGSGKTAVLVERMIRKITAEEDPVDVDRLLVVTFTNASA 71 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM HR+ E + K K P + + LL + T Sbjct: 72 AEMKHRIAEAL---------------EKELAKNPGSLHIRRQLSLL-------NRASIST 109 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++++ ++ F +AD+ + + L +E L + D + +AF+E+ Sbjct: 110 LHSFCLQVLKKYYYMIDLDPGFRMADQTEGELLGDE----VLDELFEDEYAKGNQAFFEL 165 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 + + + + D++ ++ + S+ ++ + Sbjct: 166 ADRYTTDRHDLDLQDLVK-----RVYEYSRSHPDPEVWLQSFV 203 >gi|293554030|ref|ZP_06674630.1| recombination helicase AddA [Enterococcus faecium E1039] gi|291601812|gb|EFF32064.1| recombination helicase AddA [Enterococcus faecium E1039] Length = 1240 Score = 168 bits (426), Expect = 6e-40, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T + D + VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM Sbjct: 13 FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ E + + + + R L + T+HA Sbjct: 73 KERIQEALQEAVNSESDPVR-------------------RQHFTKQLVLLPTANISTLHA 113 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC +++++ +I F + +E L++E L + N+E + F + Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 SND + L + + S L F + +K +E+ Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPQKWLEQ 203 >gi|254478432|ref|ZP_05091809.1| recombination helicase AddA [Carboxydibrachium pacificum DSM 12653] gi|214035603|gb|EEB76300.1| recombination helicase AddA [Carboxydibrachium pacificum DSM 12653] Length = 1184 Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 34/208 (16%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +A AGSGKT +LV+R++ ++ P LL +T T AAA+EM R+ E + + Sbjct: 2 AAAAGSGKTAVLVERIINIVTDPEKPVDIDRLLVVTFTNAAASEMRERIAERLIS----- 56 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + + P ++ LL + TIH+FC ++++ ++ Sbjct: 57 ----------LLDQHPEDKRLADQLTLL-------NKATITTIHSFCLDVVRKHFFLLDL 99 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 F + D+ ++ L EA + + N+E F ++E + + D++ Sbjct: 100 DPSFRVGDDTETLLLKLEAMEELFEELYEKNDE----GFLLLVESYGGTKGDQYLQDVL- 154 Query: 214 NRTALKLIFFFFSYLWRRKIIEKSLWSI 241 LKL F S W K + L + Sbjct: 155 ----LKLYGFIRSLPWPEKWLNDVLEAF 178 >gi|257884720|ref|ZP_05664373.1| UvrD/REP helicase [Enterococcus faecium 1,231,501] gi|257820558|gb|EEV47706.1| UvrD/REP helicase [Enterococcus faecium 1,231,501] Length = 1240 Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T + D + VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM Sbjct: 13 FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ E + + + + R L + T+HA Sbjct: 73 KERIQEALQEAVNSESDPVR-------------------RQHFTKQLILLPTANISTLHA 113 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC +++++ +I F + +E L++E L + N+E + F + Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 SND + L + + S L F + +K +E+ Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPQKWLEQ 203 >gi|293380925|ref|ZP_06626959.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus 214-1] gi|290922500|gb|EFD99468.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus 214-1] Length = 1202 Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 93/222 (41%), Gaps = 31/222 (13%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + TK +Q D VSA+AGSGKT +LV+RVLR +L+ LL +T TKAAA Sbjct: 1 MSQFTKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLREILSGTQVDELLVITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + LSAE+ K R L L + T Sbjct: 61 EEMKTRIKQ-----------ALSAELAKPGSN----------RRYLREQLNQVDTANIST 99 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I AFC ++ +F N+ F+I ++ L++E + L+ + + FY+ Sbjct: 100 IDAFCLEVIHRFYYSVNLDPSFSILTDDTQAALLKERALREIEGEFLEKKDVNFRHFYD- 158 Query: 196 LEISNDEDIETLISDIISNRT-ALKLIFFFFSYLWRRKIIEK 236 + D D + S R L L F + R ++K Sbjct: 159 -NFAGDRDAD-------SPRDLLLDLYDFAMAKPEYRSWLKK 192 >gi|51893311|ref|YP_076002.1| ATP-dependent deoxyribonuclease subunit A [Symbiobacterium thermophilum IAM 14863] gi|81610460|sp|Q67MD5|ADDA_SYMTH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|51857000|dbj|BAD41158.1| ATP-dependent deoxyribonuclease subunit A [Symbiobacterium thermophilum IAM 14863] Length = 1371 Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 33/231 (14%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLC 67 + + T ++ + V+A AGSGKT +LV+R++R L+ P LL Sbjct: 1 MRAMSDVRWTPEQEQAITARGADVLVAAAAGSGKTAVLVERIIRRLVDERDPLDVDQLLV 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T+AAA EM R+ A + P + + LL Sbjct: 61 VTFTEAAATEMRDRI---------------GAALQAALAGNPENERLQRQLALL------ 99 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + T+H+FC ++++Q+ + ++ E ++ L E A +EE Sbjct: 100 -GRASISTLHSFCLSLVRQYFYRLGLDPAVSVMGEHEALLLRHEVLDQLFARRF---DEE 155 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 F+ +++ + + +++ L + + W + +E+SL Sbjct: 156 EDGPFHALVDRYGGGRDDEGLRNLV-----LAIYDHMQALPWPDQWLEESL 201 >gi|313902120|ref|ZP_07835531.1| recombination helicase AddA [Thermaerobacter subterraneus DSM 13965] gi|313467638|gb|EFR63141.1| recombination helicase AddA [Thermaerobacter subterraneus DSM 13965] Length = 1488 Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 83/220 (37%), Gaps = 34/220 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T ++ R+ VSA AGSGKT +LV+R+LR LL A P LL +T T+AAA Sbjct: 14 WTDAQLQAICLRGRNLLVSAAAGSGKTSVLVERILRRLLDPASPVEIDRLLVVTFTEAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + + + P + + + LL G + T Sbjct: 74 AEMKERIRNRL---------------EQALAEHPGDARLRRQLALL-------GRASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC I +Q+ + +A E +++ L E + Sbjct: 112 VHSFCLRITRQYFYRLGLDPATRVAGEHEAQLLRFEVLDEVFERRYAQAAPDFLALVEAY 171 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 DE + L+ D L ++ W ++ Sbjct: 172 GGGRGDESLRKLVLD---------LYDSAYARPWPEAWLD 202 >gi|42519128|ref|NP_965058.1| hypothetical protein LJ1203 [Lactobacillus johnsonii NCC 533] gi|81667805|sp|Q74JA6|ADDA_LACJO RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|41583415|gb|AAS09024.1| hypothetical protein LJ_1203 [Lactobacillus johnsonii NCC 533] Length = 1204 Score = 168 bits (425), Expect = 7e-40, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 100/230 (43%), Gaps = 28/230 (12%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + TK + +D + VSA+AGSGKT +LV+RVL+ +L+ S+LL +T TKAAA Sbjct: 1 MTKFTKEQNQAINDYGKDILVSASAGSGKTTVLVERVLKRILSGTPVSSLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + I+ ++ + L + L + T Sbjct: 61 REMKERIKQKIS----------------------DQIEKEPNNQFLRSQLLDVDTANIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++++F ++ F++ +E +L++E + L+ N++ + FY+ Sbjct: 99 IDSFCLDVIRRFYYVIDLDPQFSVLTDETQAELLKERALHEIEIEYLEKNDQDFQDFYDN 158 Query: 196 LEISND-EDIETLISDIISNRTALKLIFFFFS-----YLWRRKIIEKSLW 239 D E L+ + + F + Y + +IE LW Sbjct: 159 FSGDRDAEGARNLLLQLYNTVVTEPNYEKFLNNLPNFYQVQDDLIESDLW 208 >gi|227878665|ref|ZP_03996580.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus crispatus JV-V01] gi|256843261|ref|ZP_05548749.1| recombination helicase AddA [Lactobacillus crispatus 125-2-CHN] gi|256850382|ref|ZP_05555810.1| ATP-dependent exonuclease subunit A [Lactobacillus crispatus MV-1A-US] gi|262046470|ref|ZP_06019432.1| recombination helicase AddA [Lactobacillus crispatus MV-3A-US] gi|312978152|ref|ZP_07789896.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus CTV-05] gi|227861729|gb|EEJ69333.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus crispatus JV-V01] gi|256614681|gb|EEU19882.1| recombination helicase AddA [Lactobacillus crispatus 125-2-CHN] gi|256712779|gb|EEU27772.1| ATP-dependent exonuclease subunit A [Lactobacillus crispatus MV-1A-US] gi|260573341|gb|EEX29899.1| recombination helicase AddA [Lactobacillus crispatus MV-3A-US] gi|310894870|gb|EFQ43940.1| ATP-dependent nuclease subunit A [Lactobacillus crispatus CTV-05] Length = 1202 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 93/222 (41%), Gaps = 31/222 (13%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + TK +Q D VSA+AGSGKT +LV+RVLR +L+ LL +T TKAAA Sbjct: 1 MSQFTKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLREILSGTQVDELLVITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + LSAE+ K R L L + T Sbjct: 61 EEMKTRIKQ-----------ALSAELAKPGSN----------RRYLREQLNQVDTANIST 99 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I AFC ++ +F N+ F+I ++ L++E + L+ + + FY+ Sbjct: 100 IDAFCLEVIHRFYYSVNLDPSFSILTDDTQAALLKERALREIEGEFLEKKDVNFRHFYD- 158 Query: 196 LEISNDEDIETLISDIISNRT-ALKLIFFFFSYLWRRKIIEK 236 + D D + S R L L F + R ++K Sbjct: 159 -NFAGDRDAD-------SPRDLLLDLYDFAMAKPEYRSWLKK 192 >gi|293572573|ref|ZP_06683547.1| recombination helicase AddA [Enterococcus faecium E980] gi|291607356|gb|EFF36704.1| recombination helicase AddA [Enterococcus faecium E980] Length = 1240 Score = 168 bits (425), Expect = 8e-40, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T + D + VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM Sbjct: 13 FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ E + + + + R L + T+HA Sbjct: 73 KERIQEALQEAVNSESDPVR-------------------RQHFTKQLVLLPTANISTLHA 113 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC +++++ +I F + +E L++E L + N+E + F + Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 SND + L + + S L F + +K +E+ Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPQKWLEQ 203 >gi|257881059|ref|ZP_05660712.1| UvrD/REP helicase [Enterococcus faecium 1,231,502] gi|257889644|ref|ZP_05669297.1| UvrD/REP helicase [Enterococcus faecium 1,231,410] gi|260559204|ref|ZP_05831390.1| UvrD/REP helicase [Enterococcus faecium C68] gi|293563136|ref|ZP_06677601.1| recombination helicase AddA [Enterococcus faecium E1162] gi|294623302|ref|ZP_06702164.1| recombination helicase AddA [Enterococcus faecium U0317] gi|314939883|ref|ZP_07847089.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a04] gi|314943730|ref|ZP_07850469.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133C] gi|314949686|ref|ZP_07853004.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0082] gi|314953232|ref|ZP_07856171.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133A] gi|314993688|ref|ZP_07859036.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133B] gi|314997395|ref|ZP_07862346.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a01] gi|257816717|gb|EEV44045.1| UvrD/REP helicase [Enterococcus faecium 1,231,502] gi|257826004|gb|EEV52630.1| UvrD/REP helicase [Enterococcus faecium 1,231,410] gi|260074961|gb|EEW63277.1| UvrD/REP helicase [Enterococcus faecium C68] gi|291597270|gb|EFF28459.1| recombination helicase AddA [Enterococcus faecium U0317] gi|291604914|gb|EFF34383.1| recombination helicase AddA [Enterococcus faecium E1162] gi|313588530|gb|EFR67375.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a01] gi|313591862|gb|EFR70707.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133B] gi|313594698|gb|EFR73543.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133A] gi|313597593|gb|EFR76438.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133C] gi|313640846|gb|EFS05426.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0133a04] gi|313643944|gb|EFS08524.1| ATP-dependent nuclease subunit A [Enterococcus faecium TX0082] Length = 1240 Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T + D + VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM Sbjct: 13 FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ E + + + + R L + T+HA Sbjct: 73 KERIQEALQESVNSESDPVR-------------------RQHFTKQLVLLPTANISTLHA 113 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC +++++ +I F + +E L++E L + N+E + F + Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 SND + L + + S L F + +K +E+ Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPQKWLEQ 203 >gi|294618395|ref|ZP_06697972.1| recombination helicase AddA [Enterococcus faecium E1679] gi|291595345|gb|EFF26661.1| recombination helicase AddA [Enterococcus faecium E1679] Length = 1240 Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T + D + VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM Sbjct: 13 FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ E + + + + R L + T+HA Sbjct: 73 KERIQEALQESVNSESDPVR-------------------RQHFTKQLVLLPTANISTLHA 113 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC +++++ +I F + +E L++E L + N+E + F + Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 SND + L + + S L F + +K +E+ Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPQKWLEQ 203 >gi|257898678|ref|ZP_05678331.1| UvrD/REP helicase [Enterococcus faecium Com15] gi|257836590|gb|EEV61664.1| UvrD/REP helicase [Enterococcus faecium Com15] Length = 1240 Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T + D + VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM Sbjct: 13 FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ E + + + + R L + T+HA Sbjct: 73 KERIQEALQEAVNSESDPVR-------------------RQHFTKQLVLLPTANISTLHA 113 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC +++++ +I F + +E L++E L + N+E + F + Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 SND + L + + S L F + +K +E+ Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPQKWLEQ 203 >gi|261207737|ref|ZP_05922422.1| UvrD/REP helicase [Enterococcus faecium TC 6] gi|294614014|ref|ZP_06693944.1| recombination helicase AddA [Enterococcus faecium E1636] gi|260078120|gb|EEW65826.1| UvrD/REP helicase [Enterococcus faecium TC 6] gi|291593121|gb|EFF24700.1| recombination helicase AddA [Enterococcus faecium E1636] Length = 1240 Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 27/218 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T + D + VSA+AGSGKT +LV+RV+ L LL +T T+AAA EM Sbjct: 13 FTDDQWQAIFDQGDNLLVSASAGSGKTTVLVRRVIEKLKMGFDIDELLIVTFTEAAAREM 72 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ E + + + + R L + T+HA Sbjct: 73 KERIQEALQESVNSESDPVR-------------------RQHFTKQLVLLPTANISTLHA 113 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC +++++ +I F + +E L++E L + N+E + F + Sbjct: 114 FCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELREALYAENDE--RFFQLTMNF 171 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 SND + L + + S L F + +K +E+ Sbjct: 172 SNDRSDDGLTNLVFS------LYEFARANPDPQKWLEQ 203 >gi|304403945|ref|ZP_07385607.1| recombination helicase AddA [Paenibacillus curdlanolyticus YK9] gi|304346923|gb|EFM12755.1| recombination helicase AddA [Paenibacillus curdlanolyticus YK9] Length = 1338 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 81/219 (36%), Gaps = 28/219 (12%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S T + S + V+A AGSGKT +LV+R++R + A+ LL T TKAAA+E Sbjct: 14 SWTDDQWRAVSAEGGNVLVAAAAGSGKTAVLVERIIRKISADTDVDRLLVATFTKAAASE 73 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV + + P + + L+ + T+H Sbjct: 74 MKERVRIALEGA---------------LARDPESEHLRRQLALI-------NRSSITTLH 111 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC +++ + + F +A E +S+ L EA +E+ + Sbjct: 112 SFCLEVIRSYYPLIGLDPGFRMAGETESELLRMEALDELFERKYAGEDEDSGQFLNLAER 171 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + E L R KL F S W + Sbjct: 172 YGGERGDEPLY------RLVQKLYDFSRSNPWPEHWLRA 204 >gi|295424857|ref|ZP_06817572.1| ATP-dependent nuclease subunit A [Lactobacillus amylolyticus DSM 11664] gi|295065423|gb|EFG56316.1| ATP-dependent nuclease subunit A [Lactobacillus amylolyticus DSM 11664] Length = 1199 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 61/219 (27%), Positives = 88/219 (40%), Gaps = 31/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 TK +Q D + VSA+AGSGKT +LVQRVL +L+ LL +T TKAAA EM Sbjct: 3 FTKEQQQAIDDRGKDILVSASAGSGKTTVLVQRVLDEILSGTDVDQLLIVTFTKAAAEEM 62 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +T S + L L + TI A Sbjct: 63 KERIKNALTQALQS----------------------SNQKRYLRRQLNKIDTANISTIDA 100 Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC ++ +F N+ F+I DE Q+ L E A K +S + + + FY Sbjct: 101 FCLEVIHRFYYVINLDPSFSILTDETQAALLRERALKDIESSFLTAEDNQDFIDFYN--N 158 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + D D+E D++ L L F + + Sbjct: 159 FAGDRDVEAA-HDLL-----LDLYNFAMTKPNYIDWLRS 191 >gi|251796231|ref|YP_003010962.1| recombination helicase AddA [Paenibacillus sp. JDR-2] gi|247543857|gb|ACT00876.1| recombination helicase AddA [Paenibacillus sp. JDR-2] Length = 1277 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 90/224 (40%), Gaps = 28/224 (12%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + T + V+A AGSGKT +LV+R++R + + + LL T TKAAAAE Sbjct: 14 TWTDDQWRAIVTEGSDVLVAAAAGSGKTAVLVERIIRKISSFSDVDRLLVATFTKAAAAE 73 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ + K ++P + + L+ + T+H Sbjct: 74 MKDRIR---------------IALEKELERQPESEHLRRQLALM-------NRASITTLH 111 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC +++++ + F IA+E +S+ + + ++ + AF + + Sbjct: 112 SFCLDVIRRYYPLIGLDPGFRIANETESELMRIDVLDQLFEEKYEGSSGD-SGAFLRLAD 170 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 E + + ++ +L F S+ W + ++ S Sbjct: 171 RYGGERGDEPLYKLVQ-----QLYDFAQSHPWPEHWLRQTAASF 209 >gi|300114627|ref|YP_003761202.1| UvrD/REP helicase [Nitrosococcus watsonii C-113] gi|299540564|gb|ADJ28881.1| UvrD/REP helicase [Nitrosococcus watsonii C-113] Length = 1147 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 56/228 (24%), Positives = 108/228 (47%), Gaps = 10/228 (4%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D + A +P S V A AGSGKT +L QR L LL P ++ +T T+ Sbjct: 1 MVDSSIPDADARRQALNPHGSFIVQAPAGSGKTELLTQRYLMLLARVEAPEEIVAITFTR 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM +R++E + + + + + + + + ++ + P L+ Sbjct: 61 KAAAEMRYRIIEAL---ASVKESQPPKAEPAKTTWELACAVRRRDEGMGWSLEDHPARLR 117 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 +QTI + C ++ +Q PL + + I ++ +S L +A + TLA + ++ E + Sbjct: 118 IQTIDSLCASLTRQMPLLSRFGAQPGITEDAES--LYRQAARRTLAEV--ESGAEWSASV 173 Query: 193 YEILEISNDE--DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +L N+ IE L+S +++ R L + +R+++E++L Sbjct: 174 ETLLRHLNNNWGKIERLLSAMLARRDQW-LRHLASNEQLQRELLEEAL 220 >gi|325570415|ref|ZP_08146192.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus casseliflavus ATCC 12755] gi|325156625|gb|EGC68802.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus casseliflavus ATCC 12755] Length = 1225 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 27/217 (12%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + T ++ D + VSA+AGSGKT +LV+RV+ L A +LL +T T+AAA E Sbjct: 12 TFTDTQWQAIFDKGDNILVSASAGSGKTTVLVRRVIEKLKAGTTIDSLLIVTFTEAAARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ + + N+ + R + L+ + T+H Sbjct: 72 MKERIQAALQ-------------------QAINQESDEQKRQHFVRQLQLLPTANISTLH 112 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFC ++++F ++ +F + +E L++E + L + N+E AF+ + E Sbjct: 113 AFCLTVIRRFYYLIDLDPNFRMMTDETEILLMKEEIWTQLRDQQYEANDE---AFFRLTE 169 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 + + + + D+I L L F + + Sbjct: 170 NFSSDRSDEGVGDLI-----LSLYDFARANPDPVNWL 201 >gi|150391860|ref|YP_001321909.1| recombination helicase AddA [Alkaliphilus metalliredigens QYMF] gi|251764495|sp|A6TVN2|ADDA_ALKMQ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|149951722|gb|ABR50250.1| Recombination helicase AddA [Alkaliphilus metalliredigens QYMF] Length = 1197 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 97/228 (42%), Gaps = 31/228 (13%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 + + T +Q + +SA AGSGKT +LV+R+++++L + LL +T T AA Sbjct: 1 MKNWTTEQQAAIDARGSNLLISAAAGSGKTAVLVERIIQIILKDKIDIDRLLIVTFTNAA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ I + +++ K ++ + + +LL + Sbjct: 61 AGEMRERIAGAI--------------MEEMERKTEQEAHLRRQINLL-------NRASIT 99 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TIH+FC ++++ ++ F I D ++ + EA + +E F+ Sbjct: 100 TIHSFCIDVVRRHFHIIDVDPGFRIGDITETSIMRLEALEELFEEEYQGAHE----TFFR 155 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 ++E + + D++ LK+ F S + +++ + + Sbjct: 156 LVEAFGGTKEDRPLQDLV-----LKVYGFIQSQPYPEVWLKEKVGDFS 198 >gi|89098018|ref|ZP_01170904.1| AddA [Bacillus sp. NRRL B-14911] gi|89087181|gb|EAR66296.1| AddA [Bacillus sp. NRRL B-14911] Length = 1254 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 33/225 (14%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHT 71 + + T + + V+A AGSGKT +LV+R++ +++ P LL +T T Sbjct: 11 EGAAWTDDQWKAIMASGQDILVAAAAGSGKTAVLVERIINKIVSREEPVNVDELLVVTFT 70 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 A+AAEM HR+ E + K + P + + K LL Sbjct: 71 NASAAEMRHRIGEAL---------------EKAINRDPQSAHLRKQLSLL-------SRA 108 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T+H+FC +++++ +I F IADE + + L +E + N E Sbjct: 109 SISTLHSFCLEVIRKYYYLIDIDPGFRIADETEGQLLRDEVLEELFEEEYGKENNE---D 165 Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 FY +++ + +T + DII +L F S + ++K Sbjct: 166 FYRLVDAFTSDRSDTALQDIIR-----ELYDFARSNPAPDQYLDK 205 >gi|257875815|ref|ZP_05655468.1| UvrD/REP helicase [Enterococcus casseliflavus EC20] gi|257809981|gb|EEV38801.1| UvrD/REP helicase [Enterococcus casseliflavus EC20] Length = 1225 Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats. Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 27/217 (12%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + T ++ D + VSA+AGSGKT +LV+RV+ L A +LL +T T+AAA E Sbjct: 12 TFTDTQWQAIFDKGDNILVSASAGSGKTTVLVRRVIEKLKAGTTIDSLLIVTFTEAAARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ + + N+ + R + L+ + T+H Sbjct: 72 MKERIQVALQ-------------------QAINQESDEQKRQHFVRQLQLLPTANISTLH 112 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFC ++++F ++ +F + +E L++E + L + N+E AF+ + E Sbjct: 113 AFCLTVIRRFYYLIDLDPNFRMMTDETEILLMKEEIWTQLRDQQYEANDE---AFFRLTE 169 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 + + + + D+I L L F + + Sbjct: 170 NFSSDRSDEGVGDLI-----LSLYDFARANPDPVNWL 201 >gi|227892521|ref|ZP_04010326.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus ultunensis DSM 16047] gi|227865642|gb|EEJ73063.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus ultunensis DSM 16047] Length = 1207 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 90/222 (40%), Gaps = 31/222 (13%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + TK ++ +D VSA+AGSGKT +LV+RVLR +LA + LL +T TKAAA Sbjct: 1 MPHFTKEQEKAINDRGHDILVSASAGSGKTTVLVERVLREILAGTQVNELLVVTFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ +T E+ K R L L + T Sbjct: 61 EEMKTRIKNALT-----------KELAKPGAN----------RRYLREQLNQIDTANIST 99 Query: 136 IHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 I AFC ++ +F ++ F I DE Q+ L E A + + + +K + Sbjct: 100 IDAFCLEVIHRFYYSVDLDPSFQILTDETQAALLKERALREIEGERLTAKDSSFRKFYDN 159 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + L+ D L F + +K ++K Sbjct: 160 FAGDRDADSSRDLLLD---------LYNFAMAKPDYQKWLQK 192 >gi|257866180|ref|ZP_05645833.1| UvrD/REP helicase [Enterococcus casseliflavus EC30] gi|257872511|ref|ZP_05652164.1| UvrD/REP helicase [Enterococcus casseliflavus EC10] gi|257800114|gb|EEV29166.1| UvrD/REP helicase [Enterococcus casseliflavus EC30] gi|257806675|gb|EEV35497.1| UvrD/REP helicase [Enterococcus casseliflavus EC10] Length = 1225 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 27/217 (12%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + T ++ D + VSA+AGSGKT +LV+RV+ L A +LL +T T+AAA E Sbjct: 12 TFTDTQWQAIFDKGDNILVSASAGSGKTTVLVRRVIEKLKAGTTIDSLLIVTFTEAAARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ + + N+ + R + L+ + T+H Sbjct: 72 MKERIQVALQ-------------------QAINQESDEQKRQHFVRQLQLLPTANISTLH 112 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFC ++++F ++ +F + +E L++E + L + + N+E AF+ + E Sbjct: 113 AFCLTVIRRFYYLIDLDPNFRMMTDETEILLMKEEIWTQLRNQQYEANDE---AFFRLTE 169 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 + + + + D+I L L F + + Sbjct: 170 NFSSDRSDEGVGDLI-----LSLYDFARANPDPVNWL 201 >gi|226314559|ref|YP_002774455.1| ATP-dependent nuclease subunit A [Brevibacillus brevis NBRC 100599] gi|226097509|dbj|BAH45951.1| ATP-dependent nuclease subunit A [Brevibacillus brevis NBRC 100599] Length = 1275 Score = 165 bits (419), Expect = 4e-39, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 35/227 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + + V+A AGSGKT +LV+R++R ++ P LL +T T AAA Sbjct: 13 WTDEQWQAIMQRGNNLLVAAAAGSGKTSVLVERIIRRIMDEKDPVGVDRLLVVTFTNAAA 72 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM HR+ + + K P+ S + + LL + T Sbjct: 73 AEMRHRIGDALR---------------KALKDDPHSSHLRRQLALLQRA-------TITT 110 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC I++Q+ + F IAD+ + + L ++ + L S ++ + F+ + Sbjct: 111 LHSFCLGILRQYYYLIELDPDFRIADQMEGELLRQDVLEEQLESWYENDAD-----FHAL 165 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 ++ D + L+L F S+ + + ++ A Sbjct: 166 ADVMLDGQDDHA-----LTLLLLRLYEFSRSHPAPEQWLGEAAGMFA 207 >gi|85373841|ref|YP_457903.1| ATP-dependent exoDNAse beta subunit [Erythrobacter litoralis HTCC2594] gi|84786924|gb|ABC63106.1| ATP-dependent exoDNAse beta subunit [Erythrobacter litoralis HTCC2594] Length = 1150 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 3/176 (1%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 L+ + Q A DP S W+SA+AG+GKT +L RVLRLLL + P +LLCLT TKA Sbjct: 6 LVFPLEGNQAAAVDPRDSVWLSASAGTGKTQVLSARVLRLLLQKHCEPESLLCLTFTKAG 65 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKV 133 AAEM+ RV +++ +W + D L+A++ I G + + ++AR L +L+ P GGL++ Sbjct: 66 AAEMATRVNDVLASWVRMKDGDLAADLKAI-GAPIDDATRARARTLFAKVLDCPGGGLRI 124 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 TIHAF + ++ FP E+++ ++ + + L E L + D+ + L Sbjct: 125 DTIHAFSQWLLAAFPEESDLVPGTRAMEDRERELLAREVLSELLLAAEEDDLDALA 180 >gi|172056768|ref|YP_001813228.1| recombination helicase AddA [Exiguobacterium sibiricum 255-15] gi|251764524|sp|B1YKM8|ADDA_EXIS2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|171989289|gb|ACB60211.1| recombination helicase AddA [Exiguobacterium sibiricum 255-15] Length = 1183 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 90/218 (41%), Gaps = 34/218 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + T +Q VSA AGSGKT +LV+R+ + ++ P +L T T A Sbjct: 3 VQWTDEQQRAIDARGGHILVSAAAGSGKTAVLVERLTQRVINQEDPLTADRILVATFTNA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV+E I A ++ P+ + K R ++ ++ Sbjct: 63 AAKEMKTRVIEAIEAKIKVA---------------PDDLYLKKQRQMM-------NRAQI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+FC +I+++ + F IA+E + L ++ + S + AFY Sbjct: 101 TTIHSFCLSILRENYYRIGLDPAFRIAEEAELLLLQDDVLEEVFESFYASAD----PAFY 156 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231 E+++ + + + +ISN L F S Sbjct: 157 ELIDSYTSDRDDQAMLTLISN-----LYRFSRSLPDPE 189 >gi|325663487|ref|ZP_08151897.1| hypothetical protein HMPREF0490_02638 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470386|gb|EGC73617.1| hypothetical protein HMPREF0490_02638 [Lachnospiraceae bacterium 4_1_37FAA] Length = 195 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 25/207 (12%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 +S TK + + R+ VSA AGSGKT +LV+R++ L + P +L +T T+ Sbjct: 2 GVSWTKEQAQVIHLRNRNILVSAAAGSGKTAVLVERIITRLTVDEPPIDVDQMLVVTFTE 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAAEM R+ + I K ++P + + L+ + Sbjct: 62 AAAAEMKERIRD---------------AIEKKLEEQPENVHLQRQATLIHNA-------Q 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V TIH+FC ++++ + ++ F IADE + K L ++ + L + + A Sbjct: 100 VTTIHSFCLSVIRDYFHMIDLDPGFRIADEGELKLLRQDVLEEVLENCYTAGEQSFWIAS 159 Query: 193 YEILEISNDEDIETLISDIISNRTALK 219 + + L ++ A++ Sbjct: 160 KALQQEGTTRRSRRLFCSCMNFLEAIR 186 >gi|220929196|ref|YP_002506105.1| recombination helicase AddA [Clostridium cellulolyticum H10] gi|251764516|sp|B8I2Y2|ADDA_CLOCE RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|219999524|gb|ACL76125.1| recombination helicase AddA [Clostridium cellulolyticum H10] Length = 1248 Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats. Identities = 58/226 (25%), Positives = 94/226 (41%), Gaps = 32/226 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 TK + + + V+A AG+GKT +LV+R++R + +P +LL +T T AAA Sbjct: 6 WTKEQYAAITQKDCNLLVAAAAGAGKTAVLVERIIRKITDKENPVDIDSLLVVTFTNAAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ A I+ K ++S+ LL + T Sbjct: 66 TEMRERI---------------GAAISDTIEKNQGSKNISRQLILL-------NKASITT 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ I F I DE ++ L E I D E + F+E+ Sbjct: 104 IHSFCLEVIRSNFQSIEIDPGFKILDETEATLLKSETLSDLFEEIYEDAEE--NEDFFEL 161 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 LE + I D++ + + F SY W K +E+ + S Sbjct: 162 LESYGGNRDDLKIQDMV-----MSIYSFVQSYPWPEKWLEQQIESY 202 >gi|317132410|ref|YP_004091724.1| recombination helicase AddA [Ethanoligenens harbinense YUAN-3] gi|315470389|gb|ADU26993.1| recombination helicase AddA [Ethanoligenens harbinense YUAN-3] Length = 1186 Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 32/223 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T ++ + VSA AGSGKT +LV+RV+ + HP LL +T T AAA Sbjct: 6 WTAEQKQAIEARGGTLLVSAAAGSGKTAVLVERVVGRMTDPNHPCDADRLLVVTFTNAAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R L+A + + + P +++ + + LL + T Sbjct: 66 AEMRAR---------------LAARLHTLAVEHPEDANLRRQQILLQHA-------HIST 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IHAFC +++ + +I F IADE +++ L+ + L AF + Sbjct: 104 IHAFCLELLRAHFEKLDIPPDFRIADENEARVLLGDTLDELLEESYA--GGAAGGAFLHL 161 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 E+ +T ++D T L+L F S +++ L Sbjct: 162 SEMLGAGRDDTSLTD-----TILRLFDFLRSLPDPDAWLDEKL 199 >gi|325956899|ref|YP_004292311.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus acidophilus 30SC] gi|325333464|gb|ADZ07372.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus acidophilus 30SC] gi|327183678|gb|AEA32125.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus amylovorus GRL 1118] Length = 1206 Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 22/199 (11%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + TK ++ +D VSA+AGSGKT +LV+RVLR +LA S LL +T TKAAA Sbjct: 1 MPQFTKEQEKAINDRGHDILVSASAGSGKTTVLVERVLREILAGTQVSELLVVTFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ +T R L L + T Sbjct: 61 EEMKTRIKNALTQEMAKPGVN---------------------RRYLREQLNQVDTANIST 99 Query: 136 IHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 I AFC ++ +F ++ F I DE Q+ L E A + + + + + ++ + Sbjct: 100 IDAFCLEVIHRFYYSVDLDPSFQILTDETQAALLKERALREVEGEFLTNKDSDFRRFYDN 159 Query: 195 ILEISNDEDIETLISDIIS 213 + + L+ D+ + Sbjct: 160 FAGDRDADSPRDLLLDLYN 178 >gi|315038484|ref|YP_004032052.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus amylovorus GRL 1112] gi|312276617|gb|ADQ59257.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus amylovorus GRL 1112] Length = 1205 Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats. Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 22/199 (11%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + TK ++ +D VSA+AGSGKT +LV+RVLR +LA S LL +T TKAAA Sbjct: 1 MPQFTKEQEKAINDRGHDILVSASAGSGKTTVLVERVLREILAGTQVSELLVVTFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ +T R L L + T Sbjct: 61 EEMKTRIKNALTQEMAKPGVN---------------------RRYLREQLNQVDTANIST 99 Query: 136 IHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 I AFC ++ +F ++ F I DE Q+ L E A + + + + + ++ + Sbjct: 100 IDAFCLEVIHRFYYSVDLDPSFQILTDETQAALLKERALREVEGEFLTNKDSDFRRFYDN 159 Query: 195 ILEISNDEDIETLISDIIS 213 + + L+ D+ + Sbjct: 160 FAGDRDADSPRDLLLDLYN 178 >gi|15895530|ref|NP_348879.1| ATP-dependent exoDNAse beta subunit [Clostridium acetobutylicum ATCC 824] gi|81529946|sp|Q97GV3|ADDA_CLOAB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|15025265|gb|AAK80219.1|AE007727_3 ATP-dependent exonuclease (exonuclease V) synthesis protein AddA (helicase and exonuclease domains) [Clostridium acetobutylicum ATCC 824] Length = 1252 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 93/235 (39%), Gaps = 38/235 (16%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74 + T+ ++ + V+A AGSGKT +LV+R+++++ +P LL +T T AA Sbjct: 7 NWTEEQKEAIDTRNCNLLVAAAAGSGKTAVLVERIVKIITNEENPVDIDRLLVVTFTNAA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM R+ + I + PN + K L+ G K+ Sbjct: 67 ASEMRERIGD---------------AIVNKLCENPNSRVIQKQLALI-------GKSKIT 104 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD--------NNE 186 TIH+FC +++ ++ F + DE + L E + L N Sbjct: 105 TIHSFCLDVIKNNFHMLDLDPDFRVGDETEIILLKNETLEELFEDKYLQAEYTSKGINKN 164 Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 F +++E + ++ +++ + L F S K ++K+ Sbjct: 165 NNSIEFLKLVESYCGNKNDQVLFNMV-----MNLYNFSMSNPEPYKWLKKAAERF 214 >gi|325509678|gb|ADZ21314.1| ATP-dependent exonuclease (exonuclease V) synthesis protein AddA (helicase and exonuclease domains) [Clostridium acetobutylicum EA 2018] Length = 1250 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 93/235 (39%), Gaps = 38/235 (16%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74 + T+ ++ + V+A AGSGKT +LV+R+++++ +P LL +T T AA Sbjct: 5 NWTEEQKEAIDTRNCNLLVAAAAGSGKTAVLVERIVKIITNEENPVDIDRLLVVTFTNAA 64 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM R+ + I + PN + K L+ G K+ Sbjct: 65 ASEMRERIGD---------------AIVNKLCENPNSRVIQKQLALI-------GKSKIT 102 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD--------NNE 186 TIH+FC +++ ++ F + DE + L E + L N Sbjct: 103 TIHSFCLDVIKNNFHMLDLDPDFRVGDETEIILLKNETLEELFEDKYLQAEYTSKGINKN 162 Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 F +++E + ++ +++ + L F S K ++K+ Sbjct: 163 NNSIEFLKLVESYCGNKNDQVLFNMV-----MNLYNFSMSNPEPYKWLKKAAERF 212 >gi|167765657|ref|ZP_02437710.1| hypothetical protein CLOSS21_00145 [Clostridium sp. SS2/1] gi|167712632|gb|EDS23211.1| hypothetical protein CLOSS21_00145 [Clostridium sp. SS2/1] gi|291559893|emb|CBL38693.1| recombination helicase AddA, Firmicutes type [butyrate-producing bacterium SSC/2] Length = 1188 Score = 164 bits (416), Expect = 8e-39, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 34/224 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + TK +Q + VSA AGSGKT +LV+R+++ + HP LL +T TKA Sbjct: 1 MPWTKQQQKVIDQRDADILVSAAAGSGKTAVLVERIIQKITDEKHPIDVDHLLVVTFTKA 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R++ A + + + P K L+ ++ Sbjct: 61 AAGEMKERIM---------------AALDEKVREFPGNQHFVKQLSLIHKA-------QI 98 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+FC +++ + I + A DE + + +E L E+ F Sbjct: 99 TTIHSFCMNLIRDYFYVLGIDPNTAPGDEGRLSAIRKEILDDLLEEAYEKKEED----FI 154 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 ++E + + +IS+ I LKL S+ K ++++ Sbjct: 155 NLIESYSPGKNDNIISEYI-----LKLYENARSHREPEKWLDQA 193 >gi|319650046|ref|ZP_08004195.1| AddA protein [Bacillus sp. 2_A_57_CT2] gi|317398227|gb|EFV78916.1| AddA protein [Bacillus sp. 2_A_57_CT2] Length = 1250 Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 98/222 (44%), Gaps = 33/222 (14%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74 + T + + V+A AGSGKT +LV+R++ ++A+ P LL +T T A+ Sbjct: 11 TWTDDQWKAIMAKGQDILVAAAAGSGKTAVLVERIINKIIADEDPINVDELLVVTFTNAS 70 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM HR+ E + K P + + K LL + Sbjct: 71 AAEMRHRIGEAL---------------EKAINADPKSAHLRKQVSLL-------NRASIS 108 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+H+FC +++++ +I F IADE +++ L +E + +E +AF+ Sbjct: 109 TLHSFCLEMIRKYYYMTDIDPGFRIADETEAQLLRDEVLEELFEEEY---GKEGNEAFFA 165 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +++ ++ +T + DII + L F S + ++ Sbjct: 166 LVDTFTNDRSDTALQDIIRD-----LYDFARSNPSPDQYLDS 202 >gi|58337450|ref|YP_194035.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus NCFM] gi|75357583|sp|Q5FJX0|ADDA_LACAC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|58254767|gb|AAV43004.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus NCFM] Length = 1207 Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 31/232 (13%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + TK +Q D VSA+AGSGKT +LV+RVL+ +++ S LL +T TKAAA Sbjct: 1 MPQFTKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLKEIISGTQVSELLVVTFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ L+ E+ K R L L + T Sbjct: 61 EEMKTRI-----------KTALTKELAKPGVN----------RKYLREQLNQVDTANIST 99 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIMLDNNEELKKAFYE 194 I AFC ++++F N+ F I +E LI+E A + A + D N ++ + Sbjct: 100 IDAFCLEVIRRFYYSVNLNPSFKILTDETQAALIKERALREIEAESLTDENSGIRYFYDN 159 Query: 195 ILEISNDEDIETLISDIISN-------RTALKLIFFFFSYLWRRKIIEKSLW 239 + L+ D+ + R+ LK + + I++ LW Sbjct: 160 FAGDRDANSPRDLLLDLYNFAMAKPEYRSWLKNLAKIYEV--NNNIVKSKLW 209 >gi|309809850|ref|ZP_07703700.1| UvrD/REP helicase [Lactobacillus iners SPIN 2503V10-D] gi|308169802|gb|EFO71845.1| UvrD/REP helicase [Lactobacillus iners SPIN 2503V10-D] Length = 431 Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 35/235 (14%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ I + L L L + T Sbjct: 61 SEMKLRIKNAIKNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++++F N+ +F+I ++ L++E +N ++ FY Sbjct: 99 IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157 Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239 + D ++E S ++ N A +L FF+ + + II +LW Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211 >gi|227904086|ref|ZP_04021891.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus ATCC 4796] gi|227868105|gb|EEJ75526.1| ATP-dependent exonuclease subunit A [Lactobacillus acidophilus ATCC 4796] Length = 1207 Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 31/232 (13%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + TK +Q D VSA+AGSGKT +LV+RVL+ +++ S LL +T TKAAA Sbjct: 1 MPQFTKEQQQAIDDRGHDILVSASAGSGKTTVLVERVLKEIISGTQVSELLVVTFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ L+ E+ K R L L + T Sbjct: 61 EEMKTRI-----------KTALTKELAKPGVN----------RKYLREQLNQVDTANIST 99 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIMLDNNEELKKAFYE 194 I AFC ++++F N+ F I +E LI+E A + A + D N ++ + Sbjct: 100 IDAFCLEVIRRFYYSVNLNPSFKILTDETQAALIKERALREIEAESLTDENSGIRYFYDN 159 Query: 195 ILEISNDEDIETLISDIISN-------RTALKLIFFFFSYLWRRKIIEKSLW 239 + L+ D+ + R+ LK + + I++ LW Sbjct: 160 FAGDRDANSPRDLLLDLYNFAMAKPEYRSWLKNLAKIYEV--NNNIVKSKLW 209 >gi|77919306|ref|YP_357121.1| ATP-dependent exoDNAse (exonuclease V) subunit beta [Pelobacter carbinolicus DSM 2380] gi|77545389|gb|ABA88951.1| ATP-dependent exoDNase (exonuclease V) beta subunit [Pelobacter carbinolicus DSM 2380] Length = 1118 Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 60/221 (27%), Positives = 98/221 (44%), Gaps = 8/221 (3%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 + A DP RS V A AGSGKT +L+QR+L LL P +L +T T+ AA EM Sbjct: 9 PDHDARRQALDPARSFIVQAPAGSGKTELLIQRILALLGGVQQPEEVLAITFTRKAAGEM 68 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R++ + A + A T + ++ + +LE P L VQTI + Sbjct: 69 RDRLVRALEAARQPEPQAEHARTT----WRLARAVLENDARHDWRLLENPVRLAVQTIDS 124 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA-SIMLDNNEELKKAFYEILE 197 FC +++++ P + + AI E +++L +A + L + DN E L+ Sbjct: 125 FCASLVRRMPWLSRFGAQAAIV--EDARELYRQAAERVLKLAEGPDNYGEAACLLLSHLD 182 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 + E L+ +++ R + RR+I E L Sbjct: 183 NRMERLCE-LLVGMLARRDQWLRHIYGQQPEQRRQIFEGGL 222 >gi|309806227|ref|ZP_07700241.1| UvrD/REP helicase [Lactobacillus iners LactinV 03V1-b] gi|308167374|gb|EFO69539.1| UvrD/REP helicase [Lactobacillus iners LactinV 03V1-b] Length = 428 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 35/235 (14%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ I + L L L + T Sbjct: 61 SEMKLRIKNAIKNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++++F N+ +F+I ++ L++E +N ++ FY Sbjct: 99 IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157 Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239 + D ++E S ++ N A +L FF+ + + II +LW Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211 >gi|149184293|ref|ZP_01862611.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. SD-21] gi|148831613|gb|EDL50046.1| ATP-dependent exoDNAse beta subunit [Erythrobacter sp. SD-21] Length = 1159 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 63/184 (34%), Positives = 99/184 (53%), Gaps = 7/184 (3%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 K Q L+ +P S W+SA+AG+GKT +L RVLRLLL A PS +LCLT TKA AAE Sbjct: 7 PLKDAQGLSVNPEESVWLSASAGTGKTQVLSARVLRLLLQPGADPSQILCLTFTKAGAAE 66 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTI 136 M+ RV ++ W + L+ E+ + G + S+AR L +L+ P GGL++ TI Sbjct: 67 MAVRVNAVLARWVRMDAAQLAKELGYL-GASIDPETQSRARSLFARVLDCPGGGLRIDTI 125 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAF + ++ FP EA + ++ L + L+ ++ + + +++A E+ Sbjct: 126 HAFAQYLLGAFPSEAGVLPGSQPMEDRDRDLL----SRDVLSDLLSEGDPHIREAVAEMS 181 Query: 197 EISN 200 Sbjct: 182 RRKG 185 >gi|317497577|ref|ZP_07955895.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA] gi|316895136|gb|EFV17300.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA] Length = 727 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 55/229 (24%), Positives = 96/229 (41%), Gaps = 34/229 (14%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + TK +Q + VSA AGSGKT +LV+R+++ + HP LL +T TKA Sbjct: 1 MPWTKQQQKVIDQRDADILVSAAAGSGKTAVLVERIIQKITDEKHPIDVDHLLVVTFTKA 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R++ A + + + P K L+ ++ Sbjct: 61 AAGEMKERIM---------------AALDEKVREFPGNQHFVKQLSLIHKA-------QI 98 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+FC +++ + I + A DE + + +E L E+ F Sbjct: 99 TTIHSFCMNLIRDYFYVLGIDPNTAPGDEGRLSAIRKEILDDLLEEAYEKKEED----FI 154 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 ++E + + +IS+ I LKL S+ K ++++ +I+ Sbjct: 155 NLIESYSPGKNDNIISEYI-----LKLYENARSHREPEKWLDQAEENIS 198 >gi|310657539|ref|YP_003935260.1| ATP-dependent nuclease subunit a [Clostridium sticklandii DSM 519] gi|308824317|emb|CBH20355.1| ATP-dependent nuclease, subunit A [Clostridium sticklandii] Length = 1184 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 91/226 (40%), Gaps = 31/226 (13%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75 ++ T ++Q + VSA AGSGKT +LVQR++ ++L LL +T T AAA Sbjct: 1 MAWTDAQQSAIDSRGENLLVSAAAGSGKTAVLVQRIIDIVLNEKVDVQNLLIVTFTNAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ +++ D + H L ++ + T Sbjct: 61 AEMKDRIQKMLMQRML---------------------DNPQESHYLTKQIQNLPRASIST 99 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC I+++ ++ F IA+ + +A +S ++ F + Sbjct: 100 MHSFCIDILRRNFHMLDLDPSFKIANNALVSIMKTQAMESLFDEAYDSDDV----LFLSL 155 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 ++ + +SD+I K+ F S + K +E S Sbjct: 156 VDSYGGTKDDKKLSDLID-----KVYNFIQSQPYPLKWLESEAESF 196 >gi|315653554|ref|ZP_07906474.1| ATP-dependent exonuclease subunit A [Lactobacillus iners ATCC 55195] gi|315488916|gb|EFU78558.1| ATP-dependent exonuclease subunit A [Lactobacillus iners ATCC 55195] Length = 428 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 35/235 (14%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ I + L L L + T Sbjct: 61 SEMKLRIKNAIRNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++++F N+ +F+I ++ L++E +N ++ FY Sbjct: 99 IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157 Query: 196 LEISNDEDIETLISDIIS---------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239 + D ++E S ++ N A +L FF+ + + II +LW Sbjct: 158 -NFAGDREVEAARSMLLELYYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 211 >gi|329911425|ref|ZP_08275525.1| hypothetical protein IMCC9480_457 [Oxalobacteraceae bacterium IMCC9480] gi|327545902|gb|EGF31006.1| hypothetical protein IMCC9480_457 [Oxalobacteraceae bacterium IMCC9480] Length = 1090 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 98/205 (47%), Gaps = 3/205 (1%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 D + T++ A DP S V A AGSGKT +LV R+LRLLLA PS +L +T T+ A Sbjct: 11 DAEASTEAFIAAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGTAPSEMLAITFTRKA 70 Query: 75 AAEMSHRVLEIITAWSHLSDEILSA-EITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 A EM R+++++ + D+ + + + + M AR L +L +P L + Sbjct: 71 AQEMRDRLIQLLRELALAPDDTVRTLLLERGIAASELNALMPLARGLYEKVLASPQALSI 130 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H++ +++ PL + + +++ + L +A + + D E+++A Sbjct: 131 DTFHSWFAKLIRLAPLASGVPHGYSLTAATGALAL--DAYSRFMQVLNEDGQSEVRQALQ 188 Query: 194 EILEISNDEDIETLISDIISNRTAL 218 + E+ D + L+ + R Sbjct: 189 HLYELVGDWNARKLLDAFVGKRAEW 213 >gi|291525355|emb|CBK90942.1| recombination helicase AddA, Firmicutes type [Eubacterium rectale DSM 17629] Length = 1220 Score = 163 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 35/226 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + T ++ + R VSA AGSGKT +LV+R++ + + P +L +T TKA Sbjct: 3 VKWTSEQKKVIDLRDRDILVSAAAGSGKTAVLVERIVNRICVDNPPVDIDRMLVVTFTKA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM RV S I ++ +KP+ ++ + L+ L + Sbjct: 63 AAAEMRERV---------------SRAIDSLKEQKPDDENLQRQSTLVHNAL-------I 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML-DNNEELKKAF 192 TI +FC ++Q + N+ F I D+ + K ++++A ++NEE Sbjct: 101 TTIDSFCLFVVQNNFAQLNLDPDFRIGDQAELKLMLKDALAQVFEDNYAREDNEEFINLI 160 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 + ND + ++ DI + S W RK + L Sbjct: 161 DTYSKGRNDSAVRQMVEDI---------YYKAGSSSWPRKWMNSLL 197 >gi|291527058|emb|CBK92644.1| recombination helicase AddA, Firmicutes type [Eubacterium rectale M104/1] Length = 1220 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 35/226 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + T ++ + R VSA AGSGKT +LV+R++ + + P +L +T TKA Sbjct: 3 VKWTSEQKKVIDLRDRDILVSAAAGSGKTAVLVERIVNRICVDNPPVDIDRMLVVTFTKA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM RV S I ++ +KP+ ++ + L+ L + Sbjct: 63 AAAEMRERV---------------SRAIDSLKEQKPDDENLQRQSTLVHNAL-------I 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML-DNNEELKKAF 192 TI +FC ++Q + N+ F I D+ + K ++++A ++NEE Sbjct: 101 TTIDSFCLFVVQNNFAQLNLDPDFRIGDQAELKLMLKDALAQVFEDNYAREDNEEFINLI 160 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 + ND + ++ DI + S W RK + L Sbjct: 161 DTYSKGRNDSAVRQMVEDI---------YYKAGSSSWPRKWMNSLL 197 >gi|225026995|ref|ZP_03716187.1| hypothetical protein EUBHAL_01251 [Eubacterium hallii DSM 3353] gi|224955680|gb|EEG36889.1| hypothetical protein EUBHAL_01251 [Eubacterium hallii DSM 3353] Length = 1221 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 34/223 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 ++ TK ++ ++ VSA AG+GKT +LV R+ L++ +P L +T T A Sbjct: 1 MNYTKEQEQAIFLRDKNIMVSAGAGAGKTRVLVSRMAELIMDEKNPVEADRFLVMTFTNA 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ S ++ + K P + K + + Sbjct: 61 AAAEMKERI---------------SLDLEERLAKDPENHYLRKQIRKIRQA-------DI 98 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T+H+FC +++ E +I F I +E + L ++A + L E K Sbjct: 99 STVHSFCNHLIRTHYNELSIDPSFRIGEEGELFLLRQQAIEQLLEEAYASGRESFVKFAE 158 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +D+ +E L+ D L F S+ EK Sbjct: 159 SYAPGKSDKVLEELVGD---------LYRFSRSFPNASFWFEK 192 >gi|296283899|ref|ZP_06861897.1| ATP-dependent exoDNAse beta subunit [Citromicrobium bathyomarinum JL354] Length = 1158 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 68/214 (31%), Positives = 116/214 (54%), Gaps = 8/214 (3%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 EQ A+DP S W+SA+AG+GKT +L RVLRLLL P ++LCLT TKA AAEM+ R Sbjct: 3 EQGHAADPGHSVWLSASAGTGKTQVLSARVLRLLLQPGVEPGSILCLTFTKAGAAEMATR 62 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-GGLKVQTIHAFC 140 V E + W + + +L+ + I G K + + ++ AR L +L+ P GGL++ TIHAF Sbjct: 63 VNETLARWVRMEETLLAQHLRAI-GAKVDPTTLAHARTLFTRVLDCPGGGLRIDTIHAFA 121 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 + ++ FP EA + +A +++++ L+ + L ++ + +E A + Sbjct: 122 QYLLAAFPEEAGLEPG-TVAMDDRTRGLL---AREVLTELVANADEADNSALAMLSLRLG 177 Query: 201 DEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 + ++ + R + + S RR+++ Sbjct: 178 PDGVKQWLMACAKARELWEGPQGWQS-PMRRQVL 210 >gi|255657915|ref|ZP_05403324.1| ATP-dependent nuclease subunit A [Mitsuokella multacida DSM 20544] gi|260850107|gb|EEX70114.1| ATP-dependent nuclease subunit A [Mitsuokella multacida DSM 20544] Length = 1283 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 29/226 (12%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAA 75 + T+ ++ R+ V+A AGSGKT +LV R++ +LL +L +T T AAA Sbjct: 1 MQYTEDQKKAIEARHRNILVAAAAGSGKTRVLVDRIIAQLLARECSVDEMLVVTFTNAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + + KK ++D + L + G + T Sbjct: 61 TEMRERIDKALQ-------------------KKLLETDDRETAAWLERQIVLLSGASICT 101 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA---- 191 HAFC+ +++Q ++ F +A +++ + + + L S +E KA Sbjct: 102 FHAFCQKVIRQNIDAIDVDPQFRLASDQEMVLMRRDVLEELLESSYKMPEDEAGKAKWQD 161 Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 F E ++ D+ + + + + LKL F S + + + + Sbjct: 162 FLEFVDDYGDDHGDEAVYEAV-----LKLYHFCQSQPFPKAWLRQQ 202 >gi|326403648|ref|YP_004283730.1| double-strand break repair helicase AddA [Acidiphilium multivorum AIU301] gi|325050510|dbj|BAJ80848.1| double-strand break repair helicase AddA [Acidiphilium multivorum AIU301] Length = 1157 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 70/190 (36%), Positives = 117/190 (61%), Gaps = 5/190 (2%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 SDP+ SA+V A+AGSGKT +L R+LRL+L+ A P +LCLT T+AAAAEM+ R+ + Sbjct: 16 SDPSISAFVGASAGSGKTKLLTDRLLRLMLSGATPGRILCLTFTRAAAAEMAIRLRRRLG 75 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 W+ +DE L A++ + + +AR L +L+ PGGL++ T+HAFC++++++F Sbjct: 76 DWAIATDETLDADLAALD-MPADTGTRHRARMLFGQVLDLPGGLRIDTVHAFCQSLLRRF 134 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL 207 PLEA I+ HFA+ADE ++ A+++ L D++ + A + ++ D L Sbjct: 135 PLEAQISPHFAVADEAEAAVRRRGAREAVL----GDDSRAAEAALRLLAGQISETDFAGL 190 Query: 208 ISDIISNRTA 217 ++++ A Sbjct: 191 TDRMLTDAQA 200 >gi|77164502|ref|YP_343027.1| UvrD/REP helicase [Nitrosococcus oceani ATCC 19707] gi|254433459|ref|ZP_05046967.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27] gi|76882816|gb|ABA57497.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrosococcus oceani ATCC 19707] gi|207089792|gb|EDZ67063.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27] Length = 1146 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 57/228 (25%), Positives = 102/228 (44%), Gaps = 10/228 (4%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 I+ + A +P S V A AGSGKT +L QR L LL P ++ +T T+ Sbjct: 1 MINPSIPDADARRQALNPHGSFIVQAPAGSGKTELLTQRYLMLLARVEAPEEIVAITFTR 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM +R+ I A + + + + ++ + P L+ Sbjct: 61 KAAAEMRYRI---IAALASAKENQPPKTEPAKTTWDLACAVRRRDEGKGWSLEDHPARLR 117 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 +QTI + C ++ +Q PL + + I ++ + +L +A TLA + ++ E + Sbjct: 118 IQTIDSLCASLTRQMPLLSRFGAQPGITEDAE--RLYRQAAHRTLAEV--ESGAEWSASV 173 Query: 193 YEILEISNDE--DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +L N+ IE L+S +++ R L +R+I+E++L Sbjct: 174 ETLLRHLNNNWGKIERLLSAMLARRDQWLRHLAGDEQL-QREILEEAL 220 >gi|315174632|gb|EFU18649.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1346] Length = 1271 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 21 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 80 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 81 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 121 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197 FC ++++F +I F + +E L++E L N+E AFY++ Sbjct: 122 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 178 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 SND + L + I S F + I Sbjct: 179 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 209 >gi|148260455|ref|YP_001234582.1| UvrD-like DNA helicase, C terminal [Acidiphilium cryptum JF-5] gi|146402136|gb|ABQ30663.1| UvrD-like DNA helicase, C terminal [Acidiphilium cryptum JF-5] Length = 1157 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 70/190 (36%), Positives = 117/190 (61%), Gaps = 5/190 (2%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 SDP+ SA+V A+AGSGKT +L R+LRL+L+ A P +LCLT T+AAAAEM+ R+ + Sbjct: 16 SDPSISAFVGASAGSGKTKLLTDRLLRLMLSGATPGRILCLTFTRAAAAEMAIRLRRRLG 75 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 W+ +DE L A++ + + +AR L +L+ PGGL++ T+HAFC++++++F Sbjct: 76 DWAIATDETLDADLAALD-MPADTGTRHRARMLFGQVLDLPGGLRIDTVHAFCQSLLRRF 134 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL 207 PLEA I+ HFA+ADE ++ A+++ L D++ + A + ++ D L Sbjct: 135 PLEAQISPHFAVADEAEAAVRRRGAREAVL----GDDSRAAEAALRLLAGQISETDFAGL 190 Query: 208 ISDIISNRTA 217 ++++ A Sbjct: 191 TDRMLTDAQA 200 >gi|145589486|ref|YP_001156083.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047892|gb|ABP34519.1| DNA helicase/exodeoxyribonuclease V, subunit A [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 1185 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 56/218 (25%), Positives = 101/218 (46%), Gaps = 10/218 (4%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 Q S+ + + + + LA DP +S VSA AGSGKT +LV R++RLLL + P +L Sbjct: 7 QAMSKVLSEVEKQAYSESLACDPHQSVIVSACAGSGKTWLLVARMVRLLLDDVKPQEILA 66 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILE 126 LT T+ AA EM R+ ++ +S + D+ L E+ + +S + KA+ L +L Sbjct: 67 LTFTRKAAQEMRDRLYGLLEHFSKIDDDSLMQELIARGLNVDQARSYLLKAKALYEEVLA 126 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 P + + T H + ++ P+ I F + E +K+L E ++ ++ Sbjct: 127 NPQPIVIDTFHGWFGRLLGAAPVSLGIQPGFTL--REDAKRLQSECLDDWWGNLPAEHKG 184 Query: 187 ELKKAFYEILEISNDEDIETLI---SDIISNRTALKLI 221 + +L+ + + L+ + + R A Sbjct: 185 H----YDVLLKHLGSHETQKLLMGKASLFKQRGAWNFY 218 >gi|315144626|gb|EFT88642.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2141] Length = 1271 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 21 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 80 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 81 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 121 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197 FC ++++F +I F + +E L++E L N+E AFY++ Sbjct: 122 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 178 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 SND + L + I S F + I Sbjct: 179 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 209 >gi|327534744|gb|AEA93578.1| ATP-dependent nuclease subunit A [Enterococcus faecalis OG1RF] Length = 1271 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 21 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 80 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 81 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 121 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197 FC ++++F +I F + +E L++E L N+E AFY++ Sbjct: 122 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 178 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 SND + L + I S F + I Sbjct: 179 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 209 >gi|329924069|ref|ZP_08279332.1| ATP-dependent nuclease subunit A [Paenibacillus sp. HGF5] gi|328940908|gb|EGG37216.1| ATP-dependent nuclease subunit A [Paenibacillus sp. HGF5] Length = 1376 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 91/221 (41%), Gaps = 30/221 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAA 75 + + + V+A AGSGKT +LV+R++R +L +A LL T TKAAA Sbjct: 13 WSDDQWKAIALSGDDMLVAAAAGSGKTAVLVERIIRKILDDAAGFSVDRLLVATFTKAAA 72 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ E + + + P+ + + LL G + T Sbjct: 73 AEMRGRIREAL---------------DRELDRDPDNEHIRRQLALL-------GRASITT 110 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++++ + F I +E ++ + ++ + + + + F + Sbjct: 111 LHSFCMEVIRRYYQLIPLDPGFRILNEHEADLMRQDMLEELFEEKYGEAEGDPESRFLRL 170 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + E + + ++ +L F S+ W + + Sbjct: 171 ADWFSGERTDDALYRLVQ-----RLYDFSRSHSWPSHWLRE 206 >gi|319401754|gb|EFV89962.1| recombination helicase AddA [Staphylococcus epidermidis FRI909] Length = 1218 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R++ R+L + LL +T T +A E Sbjct: 11 WTDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSARE 70 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S K PN + R + ++ T+H Sbjct: 71 MKHRVDKRIQEASF---------------KDPNNEHLKNQRIKIHQA-------QISTLH 108 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ +I +F + E ++ L+E+ L + + ++ Sbjct: 109 SFCLKLIQQHYDVLDIDPNFRTSSEAENILLLEQTIDDVLEQHYDKLDPHFIELTEQLSS 168 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ND+ ++I +L FF + + + + Sbjct: 169 DRNDDQFRSIIK---------QLYFFSIANPQPFEWLNQ 198 >gi|300859922|ref|ZP_07106010.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TUSoD Ef11] gi|300850740|gb|EFK78489.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TUSoD Ef11] Length = 1264 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197 FC ++++F +I F + +E L++E L N+E AFY++ Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 SND + L + I S F + I Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202 >gi|325291019|ref|YP_004267200.1| ATP-dependent helicase/nuclease subunit A [Syntrophobotulus glycolicus DSM 8271] gi|324966420|gb|ADY57199.1| ATP-dependent helicase/nuclease subunit A [Syntrophobotulus glycolicus DSM 8271] Length = 1273 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 32/221 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + S+ S V+A AG+GKT +LV+R++R + HP LL +T T AAA Sbjct: 6 WTNEQWEAISEKDCSILVAAAAGAGKTAVLVERIIRKITDRQHPVDIDKLLIVTFTNAAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ E I+ K+ P+ ++ + LL + T Sbjct: 66 AEMRERIAEAIS---------------KVLEDNPDSPNIQRQLTLLHKA-------SITT 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ N+ F IA+E ++ + E+ + + E + F E+ Sbjct: 104 IHSFCLEVIRTNFHRINLDPDFRIANETEAALMKLESLQELFEELY--EKETTDENFDEL 161 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 LE + + D++ L L F S W K ++ Sbjct: 162 LECYGGNRDDQALQDMV-----LNLYNFIQSSPWPEKWLQD 197 >gi|295112697|emb|CBL31334.1| DNA helicase/exodeoxyribonuclease V, subunit A [Enterococcus sp. 7L76] gi|315160943|gb|EFU04960.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0645] Length = 1264 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197 FC ++++F +I F + +E L++E L N+E AFY++ Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 SND + L + I S F + I Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202 >gi|29375689|ref|NP_814843.1| exonuclease RexA [Enterococcus faecalis V583] gi|81437087|sp|Q836J8|ADDA_ENTFA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|29343150|gb|AAO80913.1| exonuclease RexA [Enterococcus faecalis V583] Length = 1264 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197 FC ++++F +I F + +E L++E L N+E AFY++ Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 SND + L + I S F + I Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202 >gi|315168381|gb|EFU12398.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1341] Length = 1264 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197 FC ++++F +I F + +E L++E L N+E AFY++ Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 SND + L + I S F + I Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202 >gi|313472179|ref|ZP_07812671.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 1153] gi|313449090|gb|EEQ68552.2| ATP-dependent nuclease subunit A [Lactobacillus jensenii 1153] Length = 1173 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 80/199 (40%), Gaps = 24/199 (12%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +++ TK ++ + + VSA+AGSGKT +L +RV++L+ LL +T TKAAA Sbjct: 1 MVNYTKEQEAAINTREKDILVSASAGSGKTMVLAERVIKLIKDGTSLDNLLVITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ ++ N+ L L + T Sbjct: 61 NEMKERIKRVL-----------------------NEEIAQNNSRELKRELLRAEVANIST 97 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++ +F + F++ +E L++E L N + + FY+ Sbjct: 98 IDSFCLDVVHRFYYVIGLDPSFSVLTDETQAALLKEKALRELEKKAFSNQDNPYRIFYDN 157 Query: 196 LEISND-EDIETLISDIIS 213 D L+ D+ + Sbjct: 158 FAGDRDANGARELLLDLYN 176 >gi|227552897|ref|ZP_03982946.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis HH22] gi|227177969|gb|EEI58941.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis HH22] Length = 1264 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197 FC ++++F +I F + +E L++E L N+E AFY++ Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 SND + L + I S F + I Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202 >gi|238854633|ref|ZP_04644963.1| recombination helicase AddA [Lactobacillus jensenii 269-3] gi|260664424|ref|ZP_05865276.1| recombination helicase AddA [Lactobacillus jensenii SJ-7A-US] gi|282932976|ref|ZP_06338373.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1] gi|238832423|gb|EEQ24730.1| recombination helicase AddA [Lactobacillus jensenii 269-3] gi|260561489|gb|EEX27461.1| recombination helicase AddA [Lactobacillus jensenii SJ-7A-US] gi|281303011|gb|EFA95216.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1] Length = 1186 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 80/199 (40%), Gaps = 24/199 (12%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +++ TK ++ + + VSA+AGSGKT +L +RV++L+ LL +T TKAAA Sbjct: 1 MVNYTKEQEAAINTREKDILVSASAGSGKTMVLAERVIKLIKDGTSLDNLLVITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ ++ N+ L L + T Sbjct: 61 NEMKERIKRVL-----------------------NEEIAQNNSRELKRELLRAEVANIST 97 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++ +F + F++ +E L++E L N + + FY+ Sbjct: 98 IDSFCLDVVHRFYYVIGLDPSFSVLTDETQAALLKEKALRELEKKAFSNQDNPYRIFYDN 157 Query: 196 LEISND-EDIETLISDIIS 213 D L+ D+ + Sbjct: 158 FAGDRDANGARELLLDLYN 176 >gi|299535964|ref|ZP_07049283.1| ATP-dependent nuclease subunit A [Lysinibacillus fusiformis ZC1] gi|298728569|gb|EFI69125.1| ATP-dependent nuclease subunit A [Lysinibacillus fusiformis ZC1] Length = 1239 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 30/221 (13%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 ++ T + + VSA AGSGKT +L+ R++ ++A +P LL +T T A Sbjct: 12 VTWTDDQWKAIYTSGQDTLVSAAAGSGKTAVLINRMIEKVIATENPINVDELLVVTFTNA 71 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 +AAEM HR +S + K + P + + + L+ ++ Sbjct: 72 SAAEMRHR---------------MSEALEKAIAENPTSNHLRRQLSLV-------NKAQI 109 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T+H+FC AI++QF +I F IA+E + L ++ L +E+ +A Y Sbjct: 110 STLHSFCLAIVKQFAYLLDIDPGFRIANEAEIALLRDDVLAEVLEDAYDSEDEDHVQAIY 169 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +++ + + I +IS KL + +K + Sbjct: 170 RLVDSFTSDRDDQAIETLIS-----KLYDTSRVHAEPQKWL 205 >gi|229550393|ref|ZP_04439118.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis ATCC 29200] gi|229304515|gb|EEN70511.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis ATCC 29200] gi|315156546|gb|EFU00563.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0043] gi|315158289|gb|EFU02306.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0312] Length = 1271 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 21 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 80 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 81 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 121 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197 FC ++++F +I F + +E L++E L N+E AFY++ Sbjct: 122 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 178 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 SND + L + I S F + I Sbjct: 179 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 209 >gi|315573705|gb|EFU85896.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0309B] gi|315582680|gb|EFU94871.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0309A] Length = 1264 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197 FC ++++F +I F + +E L++E L N+E AFY++ Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 SND + L + I S F + I Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202 >gi|253574626|ref|ZP_04851966.1| recombination helicase AddA [Paenibacillus sp. oral taxon 786 str. D14] gi|251845672|gb|EES73680.1| recombination helicase AddA [Paenibacillus sp. oral taxon 786 str. D14] Length = 1341 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 32/222 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 + + + V+A AGSGKT +LV+R++R L P LL T TKAAA Sbjct: 14 WSDDQWRAIALSGGDMLVAAAAGSGKTAVLVERIIRKLTDREQPLSVDRLLVATFTKAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ E + K K P ++ +L G + T Sbjct: 74 AEMRGRITEAL---------------EKELAKDPGNEYLNHQLAML-------GRASITT 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC ++Q++ + F IA E ++ L +E + L E+ F ++ Sbjct: 112 LHSFCMEVIQRYYTLIPLDPGFRIASESETALLRQEVLEELLEDKYGSEPED--SPFLKL 169 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 +++ E +T + ++ +L F S+ W ++++ Sbjct: 170 VDLFGGERSDTAVFTLVQ-----RLYDFSRSHPWPDHWLQEA 206 >gi|315153691|gb|EFT97707.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0031] Length = 1271 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 21 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 80 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 81 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 121 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197 FC ++++F +I F + +E L++E L N+E AFY++ Sbjct: 122 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 178 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 SND + L + I S F + I Sbjct: 179 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 209 >gi|255973164|ref|ZP_05423750.1| UvrD/REP helicase [Enterococcus faecalis T1] gi|257422970|ref|ZP_05599960.1| exonuclease rexA [Enterococcus faecalis X98] gi|312951365|ref|ZP_07770263.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0102] gi|255964182|gb|EET96658.1| UvrD/REP helicase [Enterococcus faecalis T1] gi|257164794|gb|EEU94754.1| exonuclease rexA [Enterococcus faecalis X98] gi|310630625|gb|EFQ13908.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0102] Length = 1264 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197 FC ++++F +I F + +E L++E L N+E AFY++ Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 SND + L + I S F + I Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202 >gi|259502070|ref|ZP_05744972.1| ATP-dependent nuclease [Lactobacillus antri DSM 16041] gi|259169983|gb|EEW54478.1| ATP-dependent nuclease [Lactobacillus antri DSM 16041] Length = 1386 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 32/223 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77 T ++Q SD R+ VSA+AGSGKT +LV R + L+ A +L +T T AAA Sbjct: 6 PTPAQQQAISDRDRNIIVSASAGSGKTAVLVNRAVALIKEGRATVDRMLLVTFTDAAAKN 65 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M ++ + + + + R L+ + + TIH Sbjct: 66 MRDKIRQRLQEVAQAEP---------------------RLRDLMNEQVNRLAVADISTIH 104 Query: 138 AFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKA--FYE 194 AFC +++++ + F + D+ + L E+ + +EE A F + Sbjct: 105 AFCLKLIKRYYFLIGLDPQFRLLTDDTERLLLQEDVLRQVNEQFYASADEESDDAASFGQ 164 Query: 195 I-LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + L S+D D + L +D++ LKL+ + + + + Sbjct: 165 LVLNFSSDRDDQGL-NDLV-----LKLMEIANAQPNPEQWLAQ 201 >gi|307274585|ref|ZP_07555765.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2134] gi|306508737|gb|EFM77827.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2134] Length = 1263 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197 FC ++++F +I F + +E L++E L N+E AFY++ Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 SND + L + I S F + I Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202 >gi|257082924|ref|ZP_05577285.1| exonuclease RexA [Enterococcus faecalis E1Sol] gi|256990954|gb|EEU78256.1| exonuclease RexA [Enterococcus faecalis E1Sol] Length = 1264 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197 FC ++++F +I F + +E L++E L N+E AFY++ Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 SND + L + I S F + I Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202 >gi|315170964|gb|EFU14981.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1342] Length = 1271 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 21 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 80 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 81 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 121 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197 FC ++++F +I F + +E L++E L N+E AFY++ Sbjct: 122 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 178 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 SND + L + I S F + I Sbjct: 179 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 209 >gi|90415966|ref|ZP_01223899.1| UvrD/REP helicase family protein [marine gamma proteobacterium HTCC2207] gi|90332340|gb|EAS47537.1| UvrD/REP helicase family protein [marine gamma proteobacterium HTCC2207] Length = 1147 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 58/202 (28%), Positives = 94/202 (46%), Gaps = 5/202 (2%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 ++ A DP++S VSA AGSGKT ++ QRVLRLL +P +L +T T+ AA EM+ R Sbjct: 8 QQRRQALDPSQSFIVSAPAGSGKTGLITQRVLRLLCTVENPEEILSITFTRKAAREMASR 67 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + + ++ E Q + + + R L +L+ PG L++QTI FC Sbjct: 68 IHSALRQAAYTPRPDNEYE---AQTWDLAAAAVERNRQLGWNLLDMPGRLRIQTIDGFCR 124 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I QF LE EQ + + A ++ L I + A + ++ Sbjct: 125 YIASQFALETKFGPIPE--PSEQPQIHYQSAARALLDKIEEAGPVAEQLAVILVHTGNDM 182 Query: 202 EDIETLISDIISNRTALKLIFF 223 ETL+S+++ R + + Sbjct: 183 ARCETLLSELLGKREQWLPLIY 204 >gi|256965486|ref|ZP_05569657.1| UvrD/REP helicase [Enterococcus faecalis HIP11704] gi|307273804|ref|ZP_07555026.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0855] gi|256955982|gb|EEU72614.1| UvrD/REP helicase [Enterococcus faecalis HIP11704] gi|306509489|gb|EFM78537.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0855] Length = 1264 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197 FC ++++F +I F + +E L++E L N+E AFY++ Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 SND + L + I S F + I Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202 >gi|27467582|ref|NP_764219.1| ATP-dependent nuclease subunit A [Staphylococcus epidermidis ATCC 12228] gi|81842983|sp|Q8CPT9|ADDA_STAES RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|27315126|gb|AAO04261.1|AE016746_51 ATP-dependent nuclease subunit A [Staphylococcus epidermidis ATCC 12228] Length = 1224 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R++ R+L + LL +T T +A E Sbjct: 17 WTDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSARE 76 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S K PN + R + ++ T+H Sbjct: 77 MKHRVDKRIQEASF---------------KDPNNEHLKNQRIKIHQA-------QISTLH 114 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ +I HF + E ++ L+E+ L + + ++ Sbjct: 115 SFCLKLIQQHYDVLDIDPHFRTSSEAENILLLEQTIDDVLEQHYDKLDPHFIELTEQLSS 174 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ND+ ++I +L FF + + + + Sbjct: 175 DRNDDQFRSIIK---------QLYFFSIANPQPFEWLNQ 204 >gi|258406095|ref|YP_003198837.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692] gi|257798322|gb|ACV69259.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692] Length = 1132 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 6/205 (2%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 +D ++ A DP S V A AG+GKT +L QR L LL + P +L +T T+ Sbjct: 1 MDSNLADGKQRSRALDPYTSFIVQAPAGAGKTELLTQRYLVLLAGVSAPEEVLAITFTRK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM +R+ I A D + + + ++ + + L + + P LK+ Sbjct: 61 AATEMRNRI---IAALQRAGDPTPPDKPHEALTWRLARAVREQDQLLGWELEQAPSRLKI 117 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 QTI + C + +Q P+ ++ + I D +++ EA ++TLA + + E Sbjct: 118 QTIDSLCAQLTRQMPVLSSFGAAPGIRD--DAREFYREAARNTLAELDNETWSEPLATLL 175 Query: 194 EILEISNDEDIETLISDIISNRTAL 218 L+ + D+ E L+ D++ R Sbjct: 176 AHLDGNTDQ-FEALLVDMLGRRDQW 199 >gi|329730541|gb|EGG66929.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus epidermidis VCU144] Length = 1218 Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R++ R+L + LL +T T +A E Sbjct: 11 WTDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSARE 70 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S K PN + R + ++ T+H Sbjct: 71 MKHRVDKRIQEASF---------------KDPNNEHLKNQRIKIHQA-------QISTLH 108 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ +I HF + E ++ L+E+ L + + ++ Sbjct: 109 SFCLKLIQQHYDVLDIDPHFRTSSEAENILLLEQTIDDVLEQHYDKLDPHFIELTEQLSS 168 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ND+ ++I +L FF + + + + Sbjct: 169 DRNDDQFRSIIK---------QLYFFSIANPQPFEWLNQ 198 >gi|219668857|ref|YP_002459292.1| recombination helicase AddA [Desulfitobacterium hafniense DCB-2] gi|251764522|sp|B8FXD7|ADDA_DESHD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|219539117|gb|ACL20856.1| recombination helicase AddA [Desulfitobacterium hafniense DCB-2] Length = 1392 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 34/226 (15%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTH 70 ++ T ++Q A D V+A AGSGKT +LVQR+ + + L +T Sbjct: 1 MNNPKWTPAQQ-AAIDLKGQLLVAAAAGSGKTAVLVQRLFKQITDVDEQVDVDRFLVVTF 59 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 TKAAAAEM R+ + + + E E + + R LL Sbjct: 60 TKAAAAEMRERIGKALDEALFGAAEPAQVE------------HLLQQRALLYRA------ 101 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + T+H+FC +++Q+ + F +ADE ++ L + TL + E Sbjct: 102 -SITTLHSFCMELIRQYFYLIELDPAFRVADEAEADLLRQ----DTLEDLFEAYYGEETP 156 Query: 191 AFYEILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 AF +++ D D + L++ I L+L F S + + +E Sbjct: 157 AFQSLVDAFGTDRDDQPLMASI------LRLHEFAMSQVHPGEWLE 196 >gi|89894431|ref|YP_517918.1| hypothetical protein DSY1685 [Desulfitobacterium hafniense Y51] gi|122483028|sp|Q24WW8|ADDA_DESHY RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|89333879|dbj|BAE83474.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 1392 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 34/226 (15%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTH 70 ++ T ++Q A D V+A AGSGKT +LVQR+ + + L +T Sbjct: 1 MNNPKWTPAQQ-AAIDLKGQLLVAAAAGSGKTAVLVQRLFKQITDVDEQVDVDRFLVVTF 59 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 TKAAAAEM R+ + + + E E + + R LL Sbjct: 60 TKAAAAEMRERIGKALDEALFGAAEPAQVE------------HLLQQRALLYRA------ 101 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + T+H+FC +++Q+ + F +ADE ++ L + TL + E Sbjct: 102 -SITTLHSFCMELIRQYFYLIELDPAFRVADEAEADLLRQ----DTLEDLFEAYYGEETP 156 Query: 191 AFYEILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 AF +++ D D + L++ I L+L F S + + +E Sbjct: 157 AFQSLVDAFGTDRDDQPLMASI------LRLHEFAMSQVHPGEWLE 196 >gi|329737718|gb|EGG73961.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus epidermidis VCU028] Length = 1046 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R++ R+L + LL +T T +A E Sbjct: 11 WTDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSARE 70 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S K PN + R + ++ T+H Sbjct: 71 MKHRVDKRIQEASF---------------KDPNNEHLKNQRIKIHQA-------QISTLH 108 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ +I HF + E ++ L+E+ L + + ++ Sbjct: 109 SFCLKLIQQHYDVLDIDPHFRTSSEAENILLLEQTIDDVLEQHYDKLDPHFIELTEQLSS 168 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ND+ ++I +L FF + + + + Sbjct: 169 DRNDDQFRSIIK---------QLYFFSIANPQPFEWLNQ 198 >gi|315148450|gb|EFT92466.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4244] Length = 1264 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 58/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D K RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPEKRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197 FC ++++F +I F + +E L++E L N+E AFY++ Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 SND + L + I S F + I Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202 >gi|116334819|ref|YP_796346.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus brevis ATCC 367] gi|122268502|sp|Q03NA7|ADDA_LACBA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116100166|gb|ABJ65315.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactobacillus brevis ATCC 367] Length = 1262 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 89/220 (40%), Gaps = 27/220 (12%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S T S+ + VSA+AGSGKT +LVQRV+ L +L +T TKAAAAE Sbjct: 6 SFTPSQDQAIHQTGNNLLVSASAGSGKTRVLVQRVIERLKTGVGIDQILIVTFTKAAAAE 65 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ L E+ QG S + + L + T+ Sbjct: 66 MRERI-----------QTALRQELAVSQGD-------SAQQQFYLRQLNQLPVADISTLD 107 Query: 138 AFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 AFC ++Q++ ++ F + DE ++ L +E + +++ L F + Sbjct: 108 AFCLRLLQRYYYVIDLDPVFRLLADETENGLLRDEVWADLREDLYANDDSGL---FARLT 164 Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 E + + + ++D++ + F + + + Sbjct: 165 ENFSGDRNDQGLADLVQ-----QTYTFANATPNPTAWLAE 199 >gi|261405600|ref|YP_003241841.1| recombination helicase AddA [Paenibacillus sp. Y412MC10] gi|261282063|gb|ACX64034.1| recombination helicase AddA [Paenibacillus sp. Y412MC10] Length = 1373 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 91/221 (41%), Gaps = 30/221 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAA 75 + + + V+A AGSGKT +LV+R++R +L +A LL T TKAAA Sbjct: 13 WSDDQWKAIALSGDDMLVAAAAGSGKTAVLVERIIRKILDDAAGFSVDRLLVATFTKAAA 72 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ E + + + P+ + + LL G + T Sbjct: 73 AEMRGRIREAL---------------DRELDRDPDNEHIRRQLALL-------GRASITT 110 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++++ + F I +E ++ + ++ + + + + F + Sbjct: 111 LHSFCMEVIRRYYQLIPLDPGFRILNEHEADLMRQDMLEELFEEKYGEVEGDPESRFLRL 170 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + E + + ++ +L F S+ W + + Sbjct: 171 ADWFSGERTDDALYRLVQ-----RLYDFSRSHSWPSHWLRE 206 >gi|313904430|ref|ZP_07837807.1| recombination helicase AddA [Eubacterium cellulosolvens 6] gi|313470766|gb|EFR66091.1| recombination helicase AddA [Eubacterium cellulosolvens 6] Length = 1236 Score = 161 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 83/221 (37%), Gaps = 34/221 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T ++ + S VSA AGSGKT +LV+R+++L++ P LL +T T+AAA Sbjct: 5 WTDEQERVISQRNSDLLVSAAAGSGKTAVLVERIMQLVMDPVSPMDIDQLLVVTFTRAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ A+ + + P + + LL L + T Sbjct: 65 GEMKERI---------------GAKFAALLEEDPENDHLQQQGVLLHHAL-------ITT 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I FC ++Q + + + IA+E + L + L + + E + Sbjct: 103 IDGFCTHVIQNYFQRIGLDPGYRIAEEGELSLLRGQVLDDLLEEEYAEASPEFLRLAQAY 162 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 D +E +I DI + S + + Sbjct: 163 APGKTDRALEEMILDI---------YSYAMSDPDPEVWLSE 194 >gi|315658704|ref|ZP_07911574.1| ATP-dependent nuclease subunit A [Staphylococcus lugdunensis M23590] gi|315496335|gb|EFU84660.1| ATP-dependent nuclease subunit A [Staphylococcus lugdunensis M23590] Length = 1216 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 32/223 (14%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKA 73 + + T ++ + V+A AGSGKT +LV+R++ R++ N LL +T T Sbjct: 7 EGVIWTDAQWQSIYAKGQDVLVAAAAGSGKTAVLVERIIQRIIRDNVDVDRLLVVTFTNL 66 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 +A EM HRV + I + + PN + + R + ++ Sbjct: 67 SAREMKHRVEQRIQEAAL---------------EDPNNTHLKNQRIKIHQA-------QI 104 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T+H+FC ++QQ ++ +F + E ++ L+E+ TL N + + Sbjct: 105 STLHSFCLKLIQQHYDVLDVDPNFRTSSEAENILLLEQTIDETLEHYYDVLNSDFIELAE 164 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ + ND+D T+I L +F + + + + Sbjct: 165 QLSKDRNDDDFRTIIKS---------LYYFSIANPNPFEWLTQ 198 >gi|299822108|ref|ZP_07053994.1| ATP-dependent nuclease subunit A [Listeria grayi DSM 20601] gi|299815637|gb|EFI82875.1| ATP-dependent nuclease subunit A [Listeria grayi DSM 20601] Length = 1240 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 95/231 (41%), Gaps = 33/231 (14%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTL 65 E + + T + ++ V+A AGSGKT +LV R++ L L Sbjct: 4 SIPEKPESATWTDDQWKAIHASGQNILVAAAAGSGKTAVLVSRIIEKLKDETAGLQVDEL 63 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T A+AAEM RV A + K + P+ + K LL Sbjct: 64 LVVTFTNASAAEMKQRV---------------EAALEKALQEDPDSRHLKKQIALL---- 104 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 + T+H+FC ++++F A+I +F + + +S + +E ++ L D Sbjct: 105 ---NYASISTLHSFCLDVIRKFYYVADIDPNFRLIEPLESGMIQDEVMEALLERHYGDEE 161 Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 E F+ +++ ++ + ++ DI++ +L F + + + Sbjct: 162 NER---FFHLVDSFTNDRSDDVLLDILT-----RLYDFSRANPDPVAWLRQ 204 >gi|251810340|ref|ZP_04824813.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis BCM-HMP0060] gi|251806148|gb|EES58805.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis BCM-HMP0060] Length = 1224 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R++ R+L + LL +T T +A E Sbjct: 17 WTDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSARE 76 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S K PN + R + ++ T+H Sbjct: 77 MKHRVDKRIQEASF---------------KDPNNEHLKNQRIKIHQA-------QISTLH 114 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ +I HF + E ++ L+E+ L + + ++ Sbjct: 115 SFCLKLIQQHYDVLDIDPHFRTSSEAENILLLEQTIDDVLEQHYDKLDPHFIELTEQLSS 174 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ND+ ++I +L FF + + + + Sbjct: 175 DRNDDQFRSIIK---------QLYFFSIANPQPFEWLNQ 204 >gi|57866488|ref|YP_188146.1| exonuclease RexA [Staphylococcus epidermidis RP62A] gi|81675092|sp|Q5HQJ4|ADDA_STAEQ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|57637146|gb|AAW53934.1| exonuclease RexA [Staphylococcus epidermidis RP62A] Length = 1218 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R++ R+L + LL +T T +A E Sbjct: 11 WTDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSARE 70 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S K PN + R + ++ T+H Sbjct: 71 MKHRVDKRIQEASF---------------KDPNNEHLKNQRIKIHQA-------QISTLH 108 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ +I HF + E ++ L+E+ L + + ++ Sbjct: 109 SFCLKLIQQHYDVLDIDPHFRTSSEAENILLLEQTIDDVLEQHYDKLDPHFIELTEQLSS 168 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ND+ ++I +L FF + + + + Sbjct: 169 DRNDDQFRSIIK---------QLYFFSIANPQPFEWLNQ 198 >gi|190570633|ref|YP_001974991.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019116|ref|ZP_03334923.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356905|emb|CAQ54283.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995225|gb|EEB55866.1| helicase, UvrD/Rep family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 1089 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 67/195 (34%), Positives = 104/195 (53%), Gaps = 15/195 (7%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A +P S WVSA+AG+GKT IL+ RVLRLLL N +LCLT T AAA EM R+ + Sbjct: 5 AINPNFSVWVSASAGTGKTKILIDRVLRLLLENK--RNILCLTFTNAAANEMEDRIYSTL 62 Query: 87 TAWSHLSDEILSAEITKIQG--KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + W+ + IL A++ ++ + NK +++AR L + GL +QTIHAFC ++ Sbjct: 63 SKWAIYPEGILVADLEQLAQCVTRENKDYLTRARRLFSELENL--GLNIQTIHAFCYKLI 120 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204 FP EA I + + + K+L + TL +NE ++ I ++ + Sbjct: 121 SSFPTEAGIAPNCTL---SECKELHSIIFEKTL------HNETVQDDINIIAAEFDENKL 171 Query: 205 ETLISDIISNRTALK 219 L+ + R+AL+ Sbjct: 172 SDLLYTLCIKRSALE 186 >gi|282875534|ref|ZP_06284405.1| ATP-dependent nuclease subunit A [Staphylococcus epidermidis SK135] gi|281295561|gb|EFA88084.1| ATP-dependent nuclease subunit A [Staphylococcus epidermidis SK135] Length = 1218 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R++ R+L + LL +T T +A E Sbjct: 11 WTDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSARE 70 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S K PN + R + ++ T+H Sbjct: 71 MKHRVDKRIQEASF---------------KDPNNEHLKNQRIKIHQA-------QISTLH 108 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ +I HF + E ++ L+E+ L + + ++ Sbjct: 109 SFCLKLIQQHYDVLDIDPHFRTSSEAENILLLEQTIDDVLEQHYDKLDPHFIELTEQLSS 168 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ND+ ++I +L FF + + + + Sbjct: 169 DRNDDQFRSIIK---------QLYFFSIANPQPFEWLNQ 198 >gi|323466409|gb|ADX70096.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus helveticus H10] Length = 1204 Score = 161 bits (409), Expect = 6e-38, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 88/222 (39%), Gaps = 31/222 (13%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + TK ++ +D VSA+AGSGKT +LV+RVL+ +LA LL +T TKAAA Sbjct: 1 MPQFTKEQEKAINDRGHDILVSASAGSGKTTVLVERVLKEILAGTQVDELLVVTFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ +T L L + T Sbjct: 61 EEMKTRIKAALTKEMAKPGVD---------------------YRYLREQLNQIDTANIST 99 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I AFC ++ +F + F I ++ L++E + ML + ++ + FY+ Sbjct: 100 IDAFCLDVIHRFYYSIELDPSFTILTDDTQAALLKERALREIEGEMLTSKDKAFRHFYD- 158 Query: 196 LEISNDEDIETLISDIISNRT-ALKLIFFFFSYLWRRKIIEK 236 + D D + S R L L F + +K + + Sbjct: 159 -NFAGDRDAD-------SPRDLLLDLYNFAMAKPEYKKWLAQ 192 >gi|293368345|ref|ZP_06614973.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus epidermidis M23864:W2(grey)] gi|291317592|gb|EFE58010.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus epidermidis M23864:W2(grey)] Length = 1224 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R++ R+L LL +T T +A E Sbjct: 17 WTDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDEVDVDRLLVVTFTNLSARE 76 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S K PN + R + ++ T+H Sbjct: 77 MKHRVDKRIQEASF---------------KDPNNEHLKNQRIKIHQA-------QISTLH 114 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ +I HF + E ++ L+E+ L + + ++ Sbjct: 115 SFCLKLIQQHYDVLDIDPHFRTSSEAENILLLEQTIDDVLEQHYDKLDPHFIELTEQLSS 174 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ND+ ++I +L FF + + + + Sbjct: 175 DRNDDQFRSIIK---------QLYFFSIANPQPFEWLNQ 204 >gi|289551202|ref|YP_003472106.1| ATP-dependent nuclease, subunit A [Staphylococcus lugdunensis HKU09-01] gi|289180734|gb|ADC87979.1| ATP-dependent nuclease, subunit A [Staphylococcus lugdunensis HKU09-01] Length = 1216 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 32/223 (14%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKA 73 + + T ++ + V+A AGSGKT +LV+R++ R++ N LL +T T Sbjct: 7 EGVIWTDAQWQSIYAKGQDVLVAAAAGSGKTAVLVERIIQRIIRDNVDVDRLLVVTFTNL 66 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 +A EM HRV + I + + PN + + R + ++ Sbjct: 67 SAREMKHRVEQRIQEAAL---------------EDPNNTHLKNQRIKIHQA-------QI 104 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T+H+FC ++QQ ++ +F + E ++ L+E+ TL N + + Sbjct: 105 STLHSFCLKLIQQHYDVLDVDPNFRTSSEAENILLLEQTIDETLEHYYDVLNSDFIELAE 164 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ + ND+D T+I L +F + + + + Sbjct: 165 QLSKDRNDDDFRTIIKS---------LYYFSIANPNPFEWLTQ 198 >gi|188586470|ref|YP_001918015.1| recombination helicase AddA [Natranaerobius thermophilus JW/NM-WN-LF] gi|251764535|sp|B2A610|ADDA_NATTJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|179351157|gb|ACB85427.1| recombination helicase AddA [Natranaerobius thermophilus JW/NM-WN-LF] Length = 1282 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 34/221 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKAAA 75 T S++ + + VSA AG+GKT +LVQR++ L+ + LL +T T+ AA Sbjct: 12 WTDSQRQVIDENYHHILVSAGAGAGKTAVLVQRIISKLIDPHDDLTVNGLLVVTFTEKAA 71 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + E+ K + P + K +LL + T Sbjct: 72 NEMRDRI---------------ARELKKALSQDPENDHLKKQLYLL-------NKANIST 109 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC I++ + +I F++A E + L + S + + + + +++FY + Sbjct: 110 LHSFCLEILRHYFYYLDIDPAFSVASEYDVELLRQ----SVIDNYLEEEYGLGEQSFYLL 165 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ + + + +I L L F S+ RK ++ Sbjct: 166 VDSYGGDKNDEKLKKMI-----LTLHRFSRSHPRPRKWLQS 201 >gi|284124401|ref|ZP_06386963.1| DNA helicase, UvrD/REP type [Candidatus Poribacteria sp. WGA-A3] gi|283829217|gb|EFC33632.1| DNA helicase, UvrD/REP type [Candidatus Poribacteria sp. WGA-A3] Length = 1180 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 29/207 (14%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 + T S+Q A + + V+A AGSGKT +LV+R L +L P ++ +T T+ AA Sbjct: 1 MQFTPSQQ-DALNIEKHVCVTAGAGSGKTTVLVERYLEILRKGDVGPQNIVAITFTEKAA 59 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM RV+E + +++D +L+ + T Sbjct: 60 AEMKERVIERLNEAGNITDR--------------------------DNLLDQMSSAYIST 93 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IHAFC I+++FP A + ++F+I K L++E K TL +I + +E + + Sbjct: 94 IHAFCSRILREFPFLAKVPANFSILQGIDQKLLLQETLKETLNNIATNAEDEHRPELTHL 153 Query: 196 LEISND-EDIETLISDIISNRTALKLI 221 L+ + + + S +I R + + Sbjct: 154 LQRYGGQKKLVEIFSTMIDKRDIIAKL 180 >gi|329734888|gb|EGG71188.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus epidermidis VCU045] Length = 1218 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R++ R+L LL +T T +A E Sbjct: 11 WTDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDEVDVDRLLVVTFTNLSARE 70 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S K PN + R + ++ T+H Sbjct: 71 MKHRVDKRIQEASF---------------KDPNNEHLKNQRIKIHQA-------QISTLH 108 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ +I HF + E ++ L+E+ L + + ++ Sbjct: 109 SFCLKLIQQHYDVLDIDPHFRTSSEAENILLLEQTIDDVLEQHYDKLDPHFIELTEQLSS 168 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ND+ ++I +L FF + + + + Sbjct: 169 DRNDDQFRSIIK---------QLYFFSIANPQPFEWLNQ 198 >gi|260101292|ref|ZP_05751529.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260084877|gb|EEW68997.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 1204 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 88/222 (39%), Gaps = 31/222 (13%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + TK ++ +D VSA+AGSGKT +LV+RVL+ +LA LL +T TKAAA Sbjct: 1 MPQFTKEQEKAINDRGHDILVSASAGSGKTTVLVERVLKEILAGTQVDELLVVTFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ +T L L + T Sbjct: 61 EEMKTRIKAALTKEMAKPGVD---------------------YRYLREQLNQIDTANIST 99 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I AFC ++ +F + F I ++ L++E + ML + ++ + FY+ Sbjct: 100 IDAFCLDVIHRFYYSIELDPSFTILTDDTQAALLKERALREIEGEMLTSKDKAFRHFYD- 158 Query: 196 LEISNDEDIETLISDIISNRT-ALKLIFFFFSYLWRRKIIEK 236 + D D + S R L L F + +K + + Sbjct: 159 -NFAGDRDAD-------SPRDLLLDLYNFAMAKPEYKKWLAQ 192 >gi|238923931|ref|YP_002937447.1| DNA helicase II [Eubacterium rectale ATCC 33656] gi|238875606|gb|ACR75313.1| DNA helicase II [Eubacterium rectale ATCC 33656] Length = 1220 Score = 161 bits (408), Expect = 8e-38, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 96/226 (42%), Gaps = 35/226 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + T ++ + R VSA AGSGKT +LV+R++ + + P +L +T TKA Sbjct: 3 VKWTSEQKKVIDLRDRDILVSAAAGSGKTAVLVERIVNRICVDNPPVDIDRMLVVTFTKA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM RV S I ++ +KP+ ++ + L+ L + Sbjct: 63 AAAEMRERV---------------SCAIDSLKEQKPDDENLQRQSTLVHNAL-------I 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML-DNNEELKKAF 192 TI +FC ++Q + N+ F I D+ + K ++++A ++NE Sbjct: 101 TTIDSFCLFVVQNNFAQLNLDPDFRIGDQAELKLMLKDALAQVFEDNYAREDNEAFINLI 160 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 + ND + ++ DI + S W RK + + L Sbjct: 161 DTYSKGRNDSAVRQMVEDI---------YYKAGSSSWPRKWMNRLL 197 >gi|315165524|gb|EFU09541.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1302] Length = 1271 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 21 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 80 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 81 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 121 Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC ++++F +I F + DE ++ L E+ + +N EE + Sbjct: 122 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 181 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +D+ + LI F + I Sbjct: 182 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 209 >gi|291613181|ref|YP_003523338.1| Exodeoxyribonuclease V [Sideroxydans lithotrophicus ES-1] gi|291583293|gb|ADE10951.1| Exodeoxyribonuclease V [Sideroxydans lithotrophicus ES-1] Length = 1134 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 2/194 (1%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 LA DP S V A AGSGKT +LV R++RLLL A PS +L +T T+ AA EM R+ Sbjct: 4 QLALDPKHSIVVEACAGSGKTWLLVSRIVRLLLDGAQPSQILAITFTRKAAQEMQARLQL 63 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + D + + + ++S + +AR L ++L G+ + T H + +M Sbjct: 64 WLRDLAMADDAAVRKFFAERGLESLSESQLQRARSLYGSVLLAQPGITISTFHGWFMQVM 123 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204 Q+ PL A++ ++ + S+ EEA + L + + L + + + Sbjct: 124 QRAPLNADVMLGMSLLERAGSE--QEEAWEELLEQMRKQPDGALAQYMQWLFGECGLFNT 181 Query: 205 ETLISDIISNRTAL 218 L+ + + R Sbjct: 182 RKLLFNFLGKRAEW 195 >gi|256618697|ref|ZP_05475543.1| UvrD/REP helicase [Enterococcus faecalis ATCC 4200] gi|257089525|ref|ZP_05583886.1| exonuclease rexA [Enterococcus faecalis CH188] gi|256598224|gb|EEU17400.1| UvrD/REP helicase [Enterococcus faecalis ATCC 4200] gi|256998337|gb|EEU84857.1| exonuclease rexA [Enterococcus faecalis CH188] gi|315577474|gb|EFU89665.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0630] Length = 1264 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC ++++F +I F + DE ++ L E+ + +N EE + Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +D+ + LI F + I Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202 >gi|307288582|ref|ZP_07568566.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0109] gi|306500489|gb|EFM69822.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0109] Length = 1264 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC ++++F +I F + DE ++ L E+ + +N EE + Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +D+ + LI F + I Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202 >gi|161507624|ref|YP_001577578.1| ATP-dependent exonuclease subunit A [Lactobacillus helveticus DPC 4571] gi|251764556|sp|A8YVK0|ADDA_LACH4 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|160348613|gb|ABX27287.1| ATP-dependent exonuclease subunit A [Lactobacillus helveticus DPC 4571] Length = 1204 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 84/222 (37%), Gaps = 31/222 (13%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + TK ++ +D VSA+AGSGKT +LV+RVL+ +LA LL +T TKAAA Sbjct: 1 MPQFTKEQEKAINDRGHDILVSASAGSGKTTVLVERVLKEILAGTQVDELLVVTFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ +T L L + T Sbjct: 61 EEMKTRIKAALTKEMAKPGVD---------------------YRYLREQLNQIDTANIST 99 Query: 136 IHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 I AFC ++ +F + F I D+ Q+ L E A + ++ ++ + + Sbjct: 100 IDAFCLDVIHRFYYSIELDPSFTILTDDTQATLLKERALREIEGEMLTSKDKAFRHFYDN 159 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + L+ D L F + +K + + Sbjct: 160 FAGDRDADSPRDLLLD---------LYNFAMAKPEYKKWLAQ 192 >gi|257418942|ref|ZP_05595936.1| UvrD/REP helicase [Enterococcus faecalis T11] gi|257160770|gb|EEU90730.1| UvrD/REP helicase [Enterococcus faecalis T11] Length = 1264 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC ++++F +I F + DE ++ L E+ + +N EE + Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +D+ + LI F + I Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202 >gi|257078036|ref|ZP_05572397.1| UvrD/REP helicase [Enterococcus faecalis JH1] gi|294780984|ref|ZP_06746336.1| ATP-dependent nuclease subunit A [Enterococcus faecalis PC1.1] gi|256986066|gb|EEU73368.1| UvrD/REP helicase [Enterococcus faecalis JH1] gi|294451930|gb|EFG20380.1| ATP-dependent nuclease subunit A [Enterococcus faecalis PC1.1] gi|315031591|gb|EFT43523.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0017] gi|315034967|gb|EFT46899.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0027] gi|323480352|gb|ADX79791.1| recombination helicase AddA [Enterococcus faecalis 62] Length = 1264 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC ++++F +I F + DE ++ L E+ + +N EE + Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +D+ + LI F + I Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202 >gi|312903646|ref|ZP_07762822.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0635] gi|310632999|gb|EFQ16282.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0635] Length = 1264 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC ++++F +I F + DE ++ L E+ + +N EE + Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +D+ + LI F + I Sbjct: 175 DRSDDGLTKLI---------FSFYEFAKANPDPEAWI 202 >gi|307268773|ref|ZP_07550141.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4248] gi|306514901|gb|EFM83448.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4248] Length = 1264 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC ++++F +I F + DE ++ L E+ + +N EE + Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +D+ + LI F + I Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202 >gi|82701856|ref|YP_411422.1| UvrD/REP helicase [Nitrosospira multiformis ATCC 25196] gi|82409921|gb|ABB74030.1| DNA helicase/exodeoxyribonuclease V, subunit A [Nitrosospira multiformis ATCC 25196] Length = 1196 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 53/209 (25%), Positives = 100/209 (47%), Gaps = 11/209 (5%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + ++E+ A DP S V A AGSGKT +L+QR L+LL P ++ +T T+ AAA Sbjct: 14 VPPDEAERRQALDPACSFIVQAPAGSGKTGLLIQRYLKLLACVEEPEEVVAITFTRKAAA 73 Query: 77 EMSHRVLEIITAW-----SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 EM R++ + + S + E + + + + + + + P L Sbjct: 74 EMRQRLVAALASAQKAAHSSGAQEAEQESKHEKTTRTLAHAVLRRDAEACWRLADHPARL 133 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 ++QT + C ++ +Q P+ + D + L EA ++TLA +LD ++ + + Sbjct: 134 RIQTFDSLCASLTRQMPVLSGFGGQPETVD--DASDLYLEAARATLA--LLDGDDAVAED 189 Query: 192 FYEILEISNDE--DIETLISDIISNRTAL 218 +LE +++ IE L+ +I++ R Sbjct: 190 VECLLEHLDNDIGRIEKLLVEILALRDHW 218 >gi|329576396|gb|EGG57909.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX1467] Length = 1264 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC ++++F +I F + DE ++ L E+ + +N EE + Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +D+ + LI F + I Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202 >gi|312899588|ref|ZP_07758914.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0470] gi|311293267|gb|EFQ71823.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0470] Length = 1264 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC ++++F +I F + DE ++ L E+ + +N EE + Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +D+ + LI F + I Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202 >gi|227518367|ref|ZP_03948416.1| possible ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis TX0104] gi|227074045|gb|EEI12008.1| possible ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis TX0104] Length = 708 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LE 197 FC ++++F +I F + +E L++E L N+E AFY++ Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQE---AFYQLTAN 171 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 SND + L + I S F + I Sbjct: 172 FSNDRSDDGLTNLIFS------FYEFAKANPDPEAWI 202 >gi|256958610|ref|ZP_05562781.1| UvrD/REP helicase [Enterococcus faecalis DS5] gi|256949106|gb|EEU65738.1| UvrD/REP helicase [Enterococcus faecalis DS5] Length = 1264 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC ++++F +I F + DE ++ L E+ + +N EE + Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +D+ + LI F + I Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202 >gi|256762121|ref|ZP_05502701.1| exonuclease RexA [Enterococcus faecalis T3] gi|257086468|ref|ZP_05580829.1| UvrD/REP helicase [Enterococcus faecalis D6] gi|256683372|gb|EEU23067.1| exonuclease RexA [Enterococcus faecalis T3] gi|256994498|gb|EEU81800.1| UvrD/REP helicase [Enterococcus faecalis D6] gi|315028070|gb|EFT40002.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX2137] Length = 1264 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC ++++F +I F + DE ++ L E+ + +N EE + Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +D+ + LI F + I Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202 >gi|257415727|ref|ZP_05592721.1| UvrD/REP helicase [Enterococcus faecalis AR01/DG] gi|257157555|gb|EEU87515.1| UvrD/REP helicase [Enterococcus faecalis ARO1/DG] Length = 1264 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC ++++F +I F + DE ++ L E+ + +N EE + Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +D+ + LI F + I Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202 >gi|255976207|ref|ZP_05426793.1| exonuclease RexA [Enterococcus faecalis T2] gi|307278851|ref|ZP_07559914.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0860] gi|255969079|gb|EET99701.1| exonuclease RexA [Enterococcus faecalis T2] gi|306504522|gb|EFM73729.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0860] Length = 1264 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +Q + D + RH I P + T+HA Sbjct: 74 KERIQ------------------VALQKAMNEEQDPERRRHFSRQIALLPT-ANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC ++++F +I F + DE ++ L E+ + +N EE + Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +D+ + LI F + I Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202 >gi|313622690|gb|EFR93052.1| ATP-dependent nuclease subunit A [Listeria innocua FSL J1-023] Length = 1235 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 33/223 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAA 75 T + + V+A AGSGKT +LV R++ L+ N + LL +T T A+A Sbjct: 14 WTDDQWKAIQANGNNILVAAAAGSGKTAVLVTRIIEKLINETENLNVDELLIVTFTNASA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM +R+ + + + + P + + K LL + T Sbjct: 74 AEMKYRIGKSL---------------EEALMQNPESAHLKKQVALL-------NYASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC I+++ EA+I +F + + +S + +E + L N E AF+ + Sbjct: 112 LHSFCLEIIRKHYFEADIDPNFRLIEPIESGMIRDEVLEDLLEKEYSIENNE---AFFHL 168 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +E + + + +IS KL F + +E+ + Sbjct: 169 VESFTGDRSDAELHMMIS-----KLYDFSRANPNPDLWLEQMV 206 >gi|293115645|ref|ZP_06604556.1| ATP-dependent nuclease subunit A [Butyrivibrio crossotus DSM 2876] gi|292809250|gb|EFF68455.1| ATP-dependent nuclease subunit A [Butyrivibrio crossotus DSM 2876] Length = 1187 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 86/224 (38%), Gaps = 34/224 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 + + T +Q + + VSA AGSGKT +LV+R++ + +P ++ +T TK Sbjct: 14 MSNWTSEQQTAIYERNCNLLVSAAAGSGKTAVLVERIVSRVFDERNPVDIDRIVIVTFTK 73 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 +AA EM R+ + A I + K Sbjct: 74 SAAGEMKERLTKRFEDILKADCGNRRA----------------------IRQIALINHAK 111 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TI +FC I++ + + IAD+ +++ + E+ L + +N+E L A Sbjct: 112 ITTIDSFCSYILKNYYNTIGYEPSYRIADKGETELIKEDVYNELLEERLKNNDENLITAI 171 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + +I KL S+ W ++ + Sbjct: 172 NSLTQGKSIAPFFDIIK---------KLYDASESHPWPKEWLSD 206 >gi|315150316|gb|EFT94332.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0012] Length = 1264 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + N+ + R + + T+HA Sbjct: 74 KERIQVALQKAM-------------------NEEQNPERRRHFSRQIALLPTANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC ++++F +I F + DE ++ L E+ + +N EE + Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYRLTANFSN 174 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +D+ + LI F + I Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202 >gi|256962291|ref|ZP_05566462.1| UvrD/REP helicase [Enterococcus faecalis Merz96] gi|293383320|ref|ZP_06629235.1| ATP-dependent nuclease subunit A [Enterococcus faecalis R712] gi|293387523|ref|ZP_06632072.1| ATP-dependent nuclease subunit A [Enterococcus faecalis S613] gi|312905827|ref|ZP_07764847.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 512] gi|312909118|ref|ZP_07767977.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 516] gi|256952787|gb|EEU69419.1| UvrD/REP helicase [Enterococcus faecalis Merz96] gi|291079343|gb|EFE16707.1| ATP-dependent nuclease subunit A [Enterococcus faecalis R712] gi|291083033|gb|EFE19996.1| ATP-dependent nuclease subunit A [Enterococcus faecalis S613] gi|310628166|gb|EFQ11449.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 512] gi|311290542|gb|EFQ69098.1| ATP-dependent nuclease subunit A [Enterococcus faecalis DAPTO 516] Length = 1264 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + N+ + R + + T+HA Sbjct: 74 KERIQVALQKAM-------------------NEEQNPERRRHFSRQIALLPTANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC ++++F +I F + DE ++ L E+ + +N EE + Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +D+ + LI F + I Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202 >gi|223042879|ref|ZP_03612927.1| recombination helicase AddA [Staphylococcus capitis SK14] gi|222443733|gb|EEE49830.1| recombination helicase AddA [Staphylococcus capitis SK14] Length = 1218 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 88/219 (40%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R++ R+L N LL +T T +A E Sbjct: 11 WTDAQWRSIYAKGQDVLVAAAAGSGKTAVLVERIIQRILRDNMDVDRLLVVTFTNLSARE 70 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S +P + R + ++ T+H Sbjct: 71 MKHRVDQRIQEASL---------------AEPENEHLKNQRVKIHQA-------QISTLH 108 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ +I +F + E ++ L+++ L + + + ++ Sbjct: 109 SFCLKLIQQHYDVLDIDPNFRTSSEAENVLLLDQTIDDVLERHYDILDSDFIELTEQLSS 168 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ND+ +I +L FF + + +++ Sbjct: 169 DRNDDQFRNIIK---------RLYFFSIANPNPFEWLDQ 198 >gi|242242257|ref|ZP_04796702.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis W23144] gi|242234273|gb|EES36585.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis W23144] Length = 1218 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R++ R+L + LL +T T +A E Sbjct: 11 WTDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDDVDVDRLLVVTFTNLSARE 70 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV I S K PN + R + ++ T+H Sbjct: 71 MKHRVDIRIQEASF---------------KDPNNEHLKNQRIKIHQA-------QISTLH 108 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ +I HF + E ++ L+E+ L + + ++ Sbjct: 109 SFCLKLIQQHYDVLDIDPHFRTSSEAENILLLEQTIDDVLEQHYDKLDPHFIELTEQLSS 168 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ND+ ++I +L FF + + + + Sbjct: 169 DRNDDQFRSIIK---------QLYFFSIANPQPFEWLNQ 198 >gi|315030721|gb|EFT42653.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX4000] Length = 1271 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 21 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 80 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + N+ + R + + T+HA Sbjct: 81 KERIQVALQKAM-------------------NEEQNPERRRHFSRQIALLPTANISTLHA 121 Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC ++++F +I F + DE ++ L E+ + +N EE + Sbjct: 122 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 181 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +D+ + LI F + I Sbjct: 182 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 209 >gi|256851163|ref|ZP_05556552.1| recombination helicase AddA [Lactobacillus jensenii 27-2-CHN] gi|260660587|ref|ZP_05861502.1| recombination helicase AddA [Lactobacillus jensenii 115-3-CHN] gi|282934629|ref|ZP_06339872.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1] gi|297206028|ref|ZP_06923423.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii JV-V16] gi|256616225|gb|EEU21413.1| recombination helicase AddA [Lactobacillus jensenii 27-2-CHN] gi|260548309|gb|EEX24284.1| recombination helicase AddA [Lactobacillus jensenii 115-3-CHN] gi|281301204|gb|EFA93505.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii 208-1] gi|297149154|gb|EFH29452.1| ATP-dependent nuclease subunit A [Lactobacillus jensenii JV-V16] Length = 1186 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 79/199 (39%), Gaps = 24/199 (12%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +++ TK ++ + + VSA+AGSGKT +L +RV++L+ LL +T TKAAA Sbjct: 1 MVNYTKEQEAAINTRGKDILVSASAGSGKTMVLAERVIKLIKNGTSLDNLLVITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ ++ N L L + T Sbjct: 61 NEMKERIKRVL-----------------------NDEIAKNNSRKLKRELLRAEVANIST 97 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++ +F + F++ +E L++E L + + + FY+ Sbjct: 98 IDSFCLDVVHRFYYVIGLDPSFSVLTDETQAALLKEKALRELEKKAFASPDNPYRVFYDN 157 Query: 196 LEISND-EDIETLISDIIS 213 D L+ D+ + Sbjct: 158 FAGDRDANGARELLLDLYN 176 >gi|163790443|ref|ZP_02184874.1| exonuclease RexA [Carnobacterium sp. AT7] gi|159874347|gb|EDP68420.1| exonuclease RexA [Carnobacterium sp. AT7] Length = 1267 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 93/218 (42%), Gaps = 27/218 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T + + + VSA+AGSGKT +LVQRV+ + A + +L +T+T+AAA EM Sbjct: 14 FTDGQWQAIYEEGHNILVSASAGSGKTTVLVQRVIEKIKAGTNVDEMLIVTYTEAAAKEM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ IQ ++SDM RHL + + T+HA Sbjct: 74 KARIQ------------------VAIQESVTSESDMELKRHL-TRQVTLINQASISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC +++++ N+ F + +E L++E+ + + + L F + Sbjct: 115 FCLQVIRRYYYLINLDPIFRLLTDETEILLLKESVWEDVREELYGEEDTL---FKSLTAS 171 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +++ + ++D+I L F + +E+ Sbjct: 172 YSNDRSDAGLTDLI-----FSLYEFSRANPRPEAWLEQ 204 >gi|257085626|ref|ZP_05579987.1| UvrD/REP helicase [Enterococcus faecalis Fly1] gi|256993656|gb|EEU80958.1| UvrD/REP helicase [Enterococcus faecalis Fly1] Length = 1264 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + N+ + R + + T+HA Sbjct: 74 KERIQVALQKAM-------------------NEEQNPERRRHFSRQIALLPTANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC ++++F +I F + DE ++ L E+ + +N EE + Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +D+ + LI F + I Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202 >gi|229546208|ref|ZP_04434933.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis TX1322] gi|256852763|ref|ZP_05558133.1| exonuclease RexA [Enterococcus faecalis T8] gi|307291096|ref|ZP_07570981.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0411] gi|229308732|gb|EEN74719.1| ATP-dependent deoxyribonuclease, subunit A [Enterococcus faecalis TX1322] gi|256711222|gb|EEU26260.1| exonuclease RexA [Enterococcus faecalis T8] gi|306497750|gb|EFM67282.1| ATP-dependent nuclease subunit A [Enterococcus faecalis TX0411] Length = 1264 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 29/217 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+ D + VSA+AGSGKT +LV+RV+ + + LL +T+T+AAA EM Sbjct: 14 FTDSQWQAVFDGDENILVSASAGSGKTTVLVRRVIEKVKSGVDIDRLLIVTYTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + N+ + R + + T+HA Sbjct: 74 KERIQVALQKAM-------------------NEEQNPERRRHFSRQIALLPTANISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC ++++F +I F + DE ++ L E+ + +N EE + Sbjct: 115 FCLTVIRRFYYLIDIDPVFRMLTDETETLLLKEDVWDALREQFYAENQEEFYQLTANFSN 174 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +D+ + LI F + I Sbjct: 175 DRSDDGLTNLI---------FSFYEFAKANPDPEAWI 202 >gi|113868365|ref|YP_726854.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Ralstonia eutropha H16] gi|113527141|emb|CAJ93486.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Ralstonia eutropha H16] Length = 1200 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 7/217 (3%) Query: 3 YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62 + +Q E + T A DP RS V A AGSGKT +LV R++RLLLA A P Sbjct: 8 HVQPYQRDGEPVSEAEFT----RAACDPARSVVVEACAGSGKTWLLVARLVRLLLAGAAP 63 Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLL 121 +L +T T+ AA EM R+LE++ S SDE + A + + + + +AR L Sbjct: 64 HEILAITFTRKAAEEMRDRLLEVLAQMSRDSDEDVVAALVQRGLTHDAAREALPRARRLH 123 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 +L PG + + T H + +++ PL + I A+ E + ++ EA ++ Sbjct: 124 AQVLAAPGRMAIDTFHGWFGTLLRGAPLASGIVPGAAL--REDALRMKREAWAPVWRALA 181 Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDIISNRTAL 218 + +L+ A+ +++ D L+ + R+ Sbjct: 182 TEQYTDLRAAWETLVDTVGDFQARALLDAMFHARSEW 218 >gi|42520239|ref|NP_966154.1| UvrD/Rep/AddA family helicase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409977|gb|AAS14088.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of Drosophila melanogaster] Length = 1089 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 24/202 (11%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A +P S WV+A+AG+GKT IL+ RVLRLLL N +LCLT T AAA EM +R+ I+ Sbjct: 21 AINPNFSVWVNASAGTGKTKILIDRVLRLLLENK--RNILCLTFTNAAANEMENRIHSIL 78 Query: 87 TAWSHLSDEILSAEITKIQ-----------GKKPNKSDMSKARHLLITILETPGGLKVQT 135 + W+ SD +L+A++ ++ G + NK +++AR L + GL +QT Sbjct: 79 SKWAICSDSVLAADLEQLDFFPMSSQCVTLGSRKNKDYLTRARRLFSELENL--GLTIQT 136 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IHAFC ++ FP+EA I + + + K+L L +NE ++ I Sbjct: 137 IHAFCYKLISSFPIEAGIAPNCTL---SECKELHSIIFNKVL------HNETVQDDINLI 187 Query: 196 LEISNDEDIETLISDIISNRTA 217 ++ + L+ + R+A Sbjct: 188 ATEIDENKLRDLLYTLCVKRSA 209 >gi|323341189|ref|ZP_08081436.1| exonuclease RexA [Lactobacillus ruminis ATCC 25644] gi|323091383|gb|EFZ34008.1| exonuclease RexA [Lactobacillus ruminis ATCC 25644] Length = 1244 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 85/219 (38%), Gaps = 29/219 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T+ + + VSA+AGSGKT +LV+RV+ + LL LT T+AAA EM Sbjct: 5 FTQGQSQAIHESGHDILVSASAGSGKTRVLVERVVDKIKHGIDVDRLLILTFTEAAAKEM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + +++ + LI L + TI A Sbjct: 65 KERIQKALREACNQTED-------------------EHQKGFLINQLVKLNTADISTIDA 105 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIMLDNNEELKKAFYEILE 197 FC +Q + +A++ F + ++ K+L+ E L + ++ + + Sbjct: 106 FCLKFIQNYYYKASLDPSFRLLTDQTEKRLLREDVLNDLLEKLYGQDDADFIELAENFSN 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +D+ + LI +++ F I+ Sbjct: 166 DRSDDGLTELI---------MRVFDFANVNPDPENWIKS 195 >gi|254992021|ref|ZP_05274211.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL J2-064] Length = 541 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 35/224 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75 T + + V+A AGSGKT +LV R++ L+ N + LL +T T A+A Sbjct: 233 WTDDQWKAIQAEGNNVLVAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASA 292 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + + + + P+ + + + LL + T Sbjct: 293 AEMKFRIGKGL---------------EEALAQNPDSTHLKRQVALL-------NYASIST 330 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194 +H+FC I++++ +A+I +F + + +S + +E ++ L ++NNE Sbjct: 331 LHSFCLEIIRKYYFDADIDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNEPFFHLVES 390 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +D ++ LIS KL F + +E+ + Sbjct: 391 FTGDRSDAELHALIS---------KLYDFSRANPDPNIWLEEMV 425 >gi|217963572|ref|YP_002349250.1| recombination helicase AddA [Listeria monocytogenes HCC23] gi|251764533|sp|B8DF44|ADDA_LISMH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|217332842|gb|ACK38636.1| recombination helicase AddA [Listeria monocytogenes HCC23] gi|307571852|emb|CAR85031.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes L99] Length = 1235 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 35/224 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75 T + + V+A AGSGKT +LV R+++ L+ N + LL +T T A+A Sbjct: 14 WTDDQWKAIQAKGNNVLVAAAAGSGKTAVLVTRIIKKLIDESANLNVDELLIVTFTNASA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + + + G+ P+ + + + LL + T Sbjct: 74 AEMKFRIGKGL---------------EEALGQNPDSAHLKRQVALL-------NYASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194 +H+FC I++++ EA+I F + + +S + +E + L ++NNE Sbjct: 112 LHSFCLEIIRKYYFEADIDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNEAFFHLVES 171 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +D ++ +LIS KL F + +E + Sbjct: 172 FTGDRSDAELHSLIS---------KLYDFSRANPDPNAWLEAMV 206 >gi|291532505|emb|CBL05618.1| recombination helicase AddA, Firmicutes type [Megamonas hypermegale ART12/1] Length = 1001 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 37/222 (16%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAA 75 + + +Q + ++ V+A AGSGKT +LV+RV++ ++ + +L +T T AAA Sbjct: 1 MPWSAQQQQAINTYDKNILVAAAAGSGKTSVLVERVIQRIVNKTCDINQILVVTFTNAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ IT +K + D + LL + T Sbjct: 61 AEMRERIASAIT-------------------EKLSDKDKERQLVLL-------NASSIST 94 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYE 194 +HAFC+ I++Q+ + + F +A+ ++ + L K L + N + + + F E Sbjct: 95 LHAFCQNIIRQYFHQLGLDPKFRLANPQEIELL----KLDVLEELFETNYDKDDNEDFLE 150 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + +E + DII LKL + S + + ++ Sbjct: 151 FTDTYGNERGDDSTYDII-----LKLYEYSRSQPFPLQWLKA 187 >gi|162146539|ref|YP_001600998.1| putative UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5] gi|161785114|emb|CAP54658.1| putative UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5] Length = 1184 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 65/241 (26%), Positives = 114/241 (47%), Gaps = 27/241 (11%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--------- 64 +D I + Q ASDP S +VSA+AGSGKT +L+ R+LRL+L P+ Sbjct: 4 LDAIGLANARQGEASDPGASVFVSASAGSGKTKLLIDRLLRLMLPRPAPTRGGTGRGTCL 63 Query: 65 -------LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA 117 + CLT TKAAAAEM+ R+ + + + + T + + D + Sbjct: 64 RGRTRRAIQCLTFTKAAAAEMAIRLQKPAGELGNAARRVPGPG-TGLPVGPAVRGDTPRG 122 Query: 118 RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 + +L+ PGG+++ TIHAFC++++++FP+EA I+ HF + ++ ++ + E+ ++ + Sbjct: 123 TRMFARVLDLPGGMRIGTIHAFCQSLLRRFPVEAAISPHFTLVEDTDARIAMGESVEAVV 182 Query: 178 ASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 A + D LI + + L+ + R IE + Sbjct: 183 GG--------GGPAVAILASQIGAGDFAALIGGLQARLRQLQPVITALEQD--RAAIEAA 232 Query: 238 L 238 L Sbjct: 233 L 233 >gi|330684454|gb|EGG96177.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus epidermidis VCU121] Length = 1220 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 93/219 (42%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R++ R+L LL +T T +A E Sbjct: 11 WTDAQWRSIYAKGQDTLVAAAAGSGKTAVLVERIIQRILRDEIDVDRLLVVTFTNLSARE 70 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S + PN + R + ++ T+H Sbjct: 71 MKHRVNQRIQQASI---------------EDPNNEHLKNQRIKIHQA-------QISTLH 108 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ +I +F + E ++ L+E+ L + ++L F ++ E Sbjct: 109 SFCLKLIQQHYDVLDIDPNFRTSSEAENILLLEQTIDEVLEQ----HYDKLNPDFIDLTE 164 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +++ +T ++I +L FF + + + + Sbjct: 165 QLSNDRSDTQFRNMIK-----QLYFFSIANPDPFEWLNQ 198 >gi|315640911|ref|ZP_07896007.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus italicus DSM 15952] gi|315483329|gb|EFU73829.1| ATP-dependent deoxyribonuclease subunit A [Enterococcus italicus DSM 15952] Length = 1226 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 94/218 (43%), Gaps = 27/218 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T + + VSA+AGSGKT ILVQRV+ L + LL +T T+AAA EM Sbjct: 12 FTDDQWQAIFETDHHLLVSASAGSGKTRILVQRVIEKLKNGVNIDELLVVTFTEAAAREM 71 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ E+ K + +++ + R L + ++ T+H+ Sbjct: 72 KQRI---------------ETELHKTIQQARSEAMIQHFRKQLTLLPM----AQISTLHS 112 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC +++++ + F + +E LI+E +M + + + F+++L+ Sbjct: 113 FCLKVIRRYYYLVELDPGFRLLTDETEALLIQE---DVWNELMEEEYDASRPEFFQLLQN 169 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + ++++I L++ F + + K Sbjct: 170 FSSDRSDEPVTEMI-----LRVFQFSRANPQPDVWLRK 202 >gi|87161998|ref|YP_493570.1| exonuclease RexA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161509167|ref|YP_001574826.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|262049318|ref|ZP_06022192.1| hypothetical protein SAD30_1616 [Staphylococcus aureus D30] gi|284023894|ref|ZP_06378292.1| exonuclease RexA [Staphylococcus aureus subsp. aureus 132] gi|294847955|ref|ZP_06788702.1| recombination helicase AddA [Staphylococcus aureus A9754] gi|123486587|sp|Q2FIA8|ADDA_STAA3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|251764539|sp|A8Z073|ADDA_STAAT RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|87127972|gb|ABD22486.1| exonuclease RexA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160367976|gb|ABX28947.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|259162550|gb|EEW47118.1| hypothetical protein SAD30_1616 [Staphylococcus aureus D30] gi|294824755|gb|EFG41177.1| recombination helicase AddA [Staphylococcus aureus A9754] gi|315197320|gb|EFU27658.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp. aureus CGS01] gi|320143273|gb|EFW35063.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus MRSA177] Length = 1217 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPKNWLDQ 199 >gi|171463387|ref|YP_001797500.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192925|gb|ACB43886.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 1173 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 10/196 (5%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A DP RS VSA AGSGKT LV R++RLLL + P +L LT T+ AA EM R+ ++ Sbjct: 15 ACDPQRSVIVSACAGSGKTWSLVARMVRLLLDDVKPQEILALTFTRKAAQEMRDRLYGML 74 Query: 87 TAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 +S + D L E+ + K + + KA+ L +L P + + T H + ++ Sbjct: 75 EQFSKIDDASLIKELIARGMEKAQAEKYLPKAKALYEQVLANPQPIVIDTFHGWFGRLLG 134 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 P+ I F + E +K+L E + ELK + +L+ + + Sbjct: 135 AAPVSLGIQPGFKL--REDAKRLQAECLDDWWGDLT----PELKVHYDILLKYLGSHETQ 188 Query: 206 TLI---SDIISNRTAL 218 L+ S + R A Sbjct: 189 KLLMGKSSLFKQRGAW 204 >gi|260583800|ref|ZP_05851548.1| ATP-dependent nuclease subunit A [Granulicatella elegans ATCC 700633] gi|260158426|gb|EEW93494.1| ATP-dependent nuclease subunit A [Granulicatella elegans ATCC 700633] Length = 1244 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 29/222 (13%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 + + T + + VSA+AGSGKT +LV R++ + + +LL +T T+AA Sbjct: 7 EGVQATPEQWQAIWQRGDNLLVSASAGSGKTKVLVDRIMGYIEDGVNIDSLLIVTFTEAA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ + +I +H+ I L + Sbjct: 67 AKEMKERLRTNLEKAITKETDITK-------------------KHMYIKQLSLLPNATIS 107 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TIH+FC +++++ + + F++ +E + L E+ ++ + +L+ + + Sbjct: 108 TIHSFCMKVIRRYFYLSQLDPVFSLLNEVEGTLLKEKVWRN-IQDELLEEHSWMDGLMRY 166 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ND+ TL+ +L F S ++ I Sbjct: 167 FSSDRNDDGFTTLVY---------QLYDFSRSKPNPKQWISS 199 >gi|326202081|ref|ZP_08191951.1| LOW QUALITY PROTEIN: recombination helicase AddA [Clostridium papyrosolvens DSM 2782] gi|325987876|gb|EGD48702.1| LOW QUALITY PROTEIN: recombination helicase AddA [Clostridium papyrosolvens DSM 2782] Length = 1247 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 56/223 (25%), Positives = 93/223 (41%), Gaps = 32/223 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 TK + + + V+A AG+GKT +LV+R++R + P +LL +T T AAA Sbjct: 6 WTKEQYAAITQKDCNLLVAAAAGAGKTAVLVERIIRKITDAETPVDIDSLLVVTFTNAAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ A I+ K +++S+ LL + T Sbjct: 66 TEMRERI---------------GAAISDSIEKNQGSNNISRQLVLL-------NKASITT 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ I F I DE ++ L E I D E + F+++ Sbjct: 104 IHSFCLEVIRSNFQSIEIDPTFKILDETEATLLKSETLSELFEEIYEDV--EGNEDFFDL 161 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 LE + I +++ L + F SY W K +E+ + Sbjct: 162 LESYGSNRDDEKIQEMV-----LNIYSFVQSYPWPEKWLEQQV 199 >gi|320141216|gb|EFW33063.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus MRSA131] Length = 1217 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPKNWLDQ 199 >gi|225174781|ref|ZP_03728779.1| recombination helicase AddA [Dethiobacter alkaliphilus AHT 1] gi|225169908|gb|EEG78704.1| recombination helicase AddA [Dethiobacter alkaliphilus AHT 1] Length = 1229 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 35/226 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + + VSA AG+GKT +LV+R++RLL +P LL +T T+AAA Sbjct: 5 WTDEQLEAIETTGCNLLVSAAAGAGKTAVLVERIIRLLCHEENPLDIDRLLVVTFTEAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + + + D+++ L+ G + T Sbjct: 65 AEMRERISAAMEE----------------KIAHSGRGDLARQLSLV-------NGASIST 101 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC I++++ ++ F +ADE +++ L ++ L + AF+E+ Sbjct: 102 LHSFCLDIIRRYFYLLDMDPGFRVADEREAQMLQQQVLDQLLEDAFQSGDA----AFHEL 157 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 + + + +I L+L + +S W R+ + ++ + Sbjct: 158 AHRYGGKTADEGLGRLI-----LRLYRYTWSNPWPRQWLAEAATAF 198 >gi|258424346|ref|ZP_05687226.1| recombination helicase AddA [Staphylococcus aureus A9635] gi|257845359|gb|EEV69393.1| recombination helicase AddA [Staphylococcus aureus A9635] Length = 1217 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTFH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPDPTNWLDQ 199 >gi|224476068|ref|YP_002633674.1| putative ATP-dependent nuclease subunit A [Staphylococcus carnosus subsp. carnosus TM300] gi|251764540|sp|B9DIS2|ADDA_STACT RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|222420675|emb|CAL27489.1| putative ATP-dependent nuclease, subunit A [Staphylococcus carnosus subsp. carnosus TM300] Length = 1220 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 86/219 (39%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77 T + + V+A AGSGKT +LV+R++ R+L LL +T T +A E Sbjct: 11 WTDDQWKSIYAKGQDTLVAAAAGSGKTAVLVERIIQRILRDEIDVDRLLVVTFTNLSARE 70 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I K + P+ + + R + ++ T+H Sbjct: 71 MKHRVEKRI---------------QKASLEDPSNTHLKNQRVKIHQA-------QISTLH 108 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ +I +F + E ++ L+E+ L + N ++ Sbjct: 109 SFCLKLIQQHYDVLDIDPNFRTSSEAENILLLEQTIDEVLEKYYAELNPAFIDLSEQLSS 168 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +DE + +I + +F + + ++ Sbjct: 169 DRSDERLRQIIKSV---------YYFAVANPQPEQWLKS 198 >gi|260887200|ref|ZP_05898463.1| ATP-dependent nuclease subunit A [Selenomonas sputigena ATCC 35185] gi|330839034|ref|YP_004413614.1| recombination helicase AddA [Selenomonas sputigena ATCC 35185] gi|260863262|gb|EEX77762.1| ATP-dependent nuclease subunit A [Selenomonas sputigena ATCC 35185] gi|329746798|gb|AEC00155.1| recombination helicase AddA [Selenomonas sputigena ATCC 35185] Length = 1251 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 32/228 (14%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 D + ++ + ++ V+A AGSGKT +LV+R++R +L LL +T T A Sbjct: 3 DARKWSAAQLRAIEERGKNLLVAAAAGSGKTSVLVERIIRRILQGETDVDRLLVVTFTNA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ A + + K + + LL + Sbjct: 63 AAAEMRERI---------------EAALAQEIAKGTASPKLERQLALL-------SNASI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T+HAFC+ ++++ ++ F +A+E++ + L + A L + +E ++ F Sbjct: 101 STLHAFCQNVIRRNFSVIDLDPKFRLANEQERRLLQQNA----LEEVFEKKYDEAQEDFL 156 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 E + + ++ L+L F S + + ++ S Sbjct: 157 SFAAAYGTEHGDEALYAMV-----LRLYAFSCSQPFPSRWLDSLAESF 199 >gi|284802713|ref|YP_003414578.1| hypothetical protein LM5578_2469 [Listeria monocytogenes 08-5578] gi|284995855|ref|YP_003417623.1| hypothetical protein LM5923_2420 [Listeria monocytogenes 08-5923] gi|284058275|gb|ADB69216.1| hypothetical protein LM5578_2469 [Listeria monocytogenes 08-5578] gi|284061322|gb|ADB72261.1| hypothetical protein LM5923_2420 [Listeria monocytogenes 08-5923] Length = 1235 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 35/224 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75 T + + V+A AGSGKT +LV R++ L+ N + LL +T T A+A Sbjct: 14 WTDDQWKAIQAKGNNVLVAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + + + G+ P+ + + + LL + T Sbjct: 74 AEMKFRIGKGL---------------EEALGQNPDSAHLKRQVALL-------NYASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194 +H+FC I++++ EA+I F + + +S + +E + L ++NNE Sbjct: 112 LHSFCLEIIRKYYFEADIDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNEAFFHLVES 171 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +D ++ +LIS KL F + +E + Sbjct: 172 FTGDRSDAELHSLIS---------KLYDFSRANPDPNAWLEAMV 206 >gi|16804306|ref|NP_465791.1| hypothetical protein lmo2267 [Listeria monocytogenes EGD-e] gi|224500935|ref|ZP_03669242.1| hypothetical protein LmonFR_00190 [Listeria monocytogenes FSL R2-561] gi|81592702|sp|Q8Y511|ADDA_LISMO RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|16411737|emb|CAD00345.1| lmo2267 [Listeria monocytogenes EGD-e] Length = 1235 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 35/224 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75 T + + V+A AGSGKT +LV R++ L+ N + LL +T T A+A Sbjct: 14 WTDDQWKAIQAKGNNVLVAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + + + G+ P+ + + + LL + T Sbjct: 74 AEMKFRIGKGL---------------EEALGQNPDSAHLKRQVALL-------NYASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194 +H+FC I++++ EA+I F + + +S + +E + L ++NNE Sbjct: 112 LHSFCLEIIRKYYFEADIDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNEAFFHLVES 171 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +D ++ +LIS KL F + +E + Sbjct: 172 FTGDRSDAELHSLIS---------KLYDFSRANPDPNAWLEAMV 206 >gi|254831297|ref|ZP_05235952.1| hypothetical protein Lmon1_08062 [Listeria monocytogenes 10403S] Length = 1235 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 35/224 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75 T + + V+A AGSGKT +LV R++ L+ N + LL +T T A+A Sbjct: 14 WTDDQWKAIQAKGNNVLVAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + + + G+ P+ + + + LL + T Sbjct: 74 AEMKFRIGKGL---------------EEALGQNPDSAHLKRQVALL-------NYASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194 +H+FC I++++ EA+I F + + +S + +E + L ++NNE Sbjct: 112 LHSFCLEIIRKYYFEADIDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNEAFFHLVES 171 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +D ++ +LIS KL F + +E + Sbjct: 172 FTGDRSDAELHSLIS---------KLYDFSRANPDPNAWLEAMV 206 >gi|237807125|ref|YP_002891565.1| DNA helicase II [Tolumonas auensis DSM 9187] gi|237499386|gb|ACQ91979.1| DNA helicase II [Tolumonas auensis DSM 9187] Length = 729 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 41/198 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + + + A P ++ V A AGSGKT +LV R+ LL + P ++L Sbjct: 2 DISHLLDGLNDKQRDVVAA--PLQNMLVLAGAGSGKTRVLVHRIAWLLQIEQVSPHSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM R+ ++ Sbjct: 60 VTFTNKAAAEMRGRIERLLGNSLGFGR--------------------------------- 86 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ PL+AN+ F I D + +L+ K L ++ LD + Sbjct: 87 -GGMWIGTFHGLAHRLLRAHPLDANLPEDFQIIDSDDQLRLL----KRILRNLNLDEKQW 141 Query: 188 LKKAFYEILEISNDEDIE 205 + +A + DE + Sbjct: 142 VPRAVAGYINSKKDEGLR 159 >gi|169826779|ref|YP_001696937.1| ATP-dependent nuclease subunit A [Lysinibacillus sphaericus C3-41] gi|251764534|sp|B1HN90|ADDA_LYSSC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|168991267|gb|ACA38807.1| ATP-dependent nuclease subunit A [Lysinibacillus sphaericus C3-41] Length = 1238 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 93/218 (42%), Gaps = 26/218 (11%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 +S T + + VSA AGSGKT +L+ R++ ++A +P LL +T T A Sbjct: 12 VSWTDDQWKAIYASGQDTLVSAAAGSGKTAVLINRMIEKVIATDNPINVDELLVVTFTNA 71 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 +AAEM HR +S + K + P S + + L+ ++ Sbjct: 72 SAAEMRHR---------------MSEALEKAIVENPTSSHLRRQLSLI-------NKAQI 109 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T+H+FC AI++Q+ +I F IA+E + L ++ L E +A Y Sbjct: 110 STLHSFCLAIVKQYAYLLDIDPGFRIANEAEVALLRDDIVADVLEGAYDSEEETQVQAIY 169 Query: 194 EILEISNDEDIETLISDIISN-RTALKLIFFFFSYLWR 230 +++ + + I +IS ++ +LW Sbjct: 170 RLVDSFTSDRDDQAIETLISKLYDTSRVHAEPQRWLWS 207 >gi|323489925|ref|ZP_08095147.1| ATP-dependent nuclease subunit A [Planococcus donghaensis MPA1U2] gi|323396432|gb|EGA89256.1| ATP-dependent nuclease subunit A [Planococcus donghaensis MPA1U2] Length = 1202 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 96/222 (43%), Gaps = 33/222 (14%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74 + T + + + VSA AGSGKT +L+ R++ +LA P LL +T T A+ Sbjct: 10 TWTDEQWMAIWAKGQDMLVSAAAGSGKTAVLINRMIEKVLAEDDPISVDELLVVTFTNAS 69 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM HR +S + K + P+ S + K L+ ++ Sbjct: 70 AAEMRHR---------------MSKALEKAVAENPDSSHLRKQLRLI-------NKAQIS 107 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+H+FC +++Q+ I F IA E ++ L ++ ++ L S E A Y Sbjct: 108 TLHSFCLQVVKQYAYLLEIDPGFRIAGETEAALLRDDVLEAVLESAYEG---EGADAVYR 164 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + + + ++S KL + + ++ +++ Sbjct: 165 LADSFTSDRSDQAMEVLLS-----KLYDYSRVHPNPQEWLQQ 201 >gi|47097165|ref|ZP_00234731.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 1/2a F6854] gi|254899032|ref|ZP_05258956.1| hypothetical protein LmonJ_04449 [Listeria monocytogenes J0161] gi|254912827|ref|ZP_05262839.1| ATP-dependent nuclease [Listeria monocytogenes J2818] gi|254937154|ref|ZP_05268851.1| ATP-dependent nuclease [Listeria monocytogenes F6900] gi|47014470|gb|EAL05437.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 1/2a F6854] gi|258609758|gb|EEW22366.1| ATP-dependent nuclease [Listeria monocytogenes F6900] gi|293590824|gb|EFF99158.1| ATP-dependent nuclease [Listeria monocytogenes J2818] Length = 1235 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 35/224 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75 T + + V+A AGSGKT +LV R++ L+ N + LL +T T A+A Sbjct: 14 WTDDQWKAIQAKGNNVLVAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + + + G+ P+ + + + LL + T Sbjct: 74 AEMKFRIGKGL---------------EEALGQNPDSAHLKRQVALL-------NYASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194 +H+FC I++++ EA+I F + + +S + +E + L ++NNE Sbjct: 112 LHSFCLEIIRKYYFEADIDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNEAFFHLVES 171 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +D ++ +LIS KL F + +E + Sbjct: 172 FTGDRSDAELHSLIS---------KLYDFSRANPDPNAWLEAMV 206 >gi|224499009|ref|ZP_03667358.1| hypothetical protein LmonF1_04628 [Listeria monocytogenes Finland 1988] gi|254826845|ref|ZP_05231532.1| ATP-dependent nuclease [Listeria monocytogenes FSL N3-165] gi|258599223|gb|EEW12548.1| ATP-dependent nuclease [Listeria monocytogenes FSL N3-165] Length = 1235 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 35/224 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75 T + + V+A AGSGKT +LV R++ L+ N + LL +T T A+A Sbjct: 14 WTDDQWKAIQAKGNNVLVAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + + + G+ P+ + + + LL + T Sbjct: 74 AEMKFRIGKGL---------------EEALGQNPDSAHLKRQVALL-------NYASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194 +H+FC I++++ EA+I F + + +S + +E + L ++NNE Sbjct: 112 LHSFCLEIIRKYYFEADIDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNEAFFHLVES 171 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +D ++ +LIS KL F + +E + Sbjct: 172 FTGDRSDAELHSLIS---------KLYDFSRANPDPNAWLEAMV 206 >gi|192360802|ref|YP_001982657.1| UvrD/REP helicase domain-containing protein [Cellvibrio japonicus Ueda107] gi|190686967|gb|ACE84645.1| UvrD/REP helicase domain protein [Cellvibrio japonicus Ueda107] Length = 1163 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 9/225 (4%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 + +L A DP RS VSA AGSGKT +L QRVL+LL P +L +T T+ AA EM Sbjct: 15 PDQDIRLAAIDPERSFAVSAPAGSGKTGLLTQRVLQLLAHCEQPEEILAITFTRKAAGEM 74 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + A DE + + + ++ + + +L +P L++ TI + Sbjct: 75 QDRI---LHALWQAQDEPEPNDPHARRTWRLAQAALKRDSEFGWQLLHSPQRLRITTIDS 131 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C AI QQ PL + + + ++ + A + + D L++ +L Sbjct: 132 LCRAITQQLPLASGLGAQPDTLEQPEQA--YRLAVRELFKQL--DKESPLREHLARLLRH 187 Query: 199 SND--EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 ++ + +E L++++++ R + R E+ L + Sbjct: 188 LDNNLQTVEDLLANLLAKREQWLHPLLMARHQQARPYFEQVLQDL 232 >gi|317128676|ref|YP_004094958.1| recombination helicase AddA [Bacillus cellulosilyticus DSM 2522] gi|315473624|gb|ADU30227.1| recombination helicase AddA [Bacillus cellulosilyticus DSM 2522] Length = 1242 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 31/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 T + + V+A AGSGKT +LV+R++R ++ N LL +T T AAAAE Sbjct: 12 WTDDQWKAIDASGNNILVAAAAGSGKTAVLVERIIRKIVNHNVDVDQLLIVTFTNAAAAE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HR+ + I K P + + LL + T+H Sbjct: 72 MRHRIGD---------------AIEKQLKDDPTSLHLRRQLTLL-------NRANISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC +++QF +I F + D + + + EE + + N F+ +++ Sbjct: 110 SFCMKVVRQFYYVVDIDPSFRLLDTTEGELIREEILEELFEEEYGNENNH---EFFHVVD 166 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + + +I KL F S+ +++ Sbjct: 167 SYSGDRSDEPLRQLIR-----KLYDFSRSHPDPNAWLDE 200 >gi|153938269|ref|YP_001389808.1| recombination helicase AddA [Clostridium botulinum F str. Langeland] gi|251764514|sp|A7GAJ8|ADDA_CLOBL RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|152934165|gb|ABS39663.1| recombination helicase AddA [Clostridium botulinum F str. Langeland] gi|295317895|gb|ADF98272.1| recombination helicase AddA [Clostridium botulinum F str. 230613] Length = 1279 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 83/224 (37%), Gaps = 35/224 (15%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 + T ++ + V A AG+GKT +LVQR++ +L P LL +T Sbjct: 1 MSGTKWTDEQRQAIFTKNCNLLVVAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAAEM R+ + I+ K + P + K LL Sbjct: 61 TNAAAAEMRERIGDAIS---------------KGLDEDPESKVLRKQLTLL-------NK 98 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + TIH+FC +++ I +F I DE + + +EA + NE+ Sbjct: 99 SNIMTIHSFCLQVIKNNFHTMEIDPNFRICDETEGILMKQEAIDELFDELYEIENED--- 155 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 F ++E L L+L F S + + Sbjct: 156 -FINLVESYASRKDTRL------QEVVLELHRFAKSAPFPYTWL 192 >gi|292492977|ref|YP_003528416.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4] gi|291581572|gb|ADE16029.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4] Length = 1159 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 100/203 (49%), Gaps = 11/203 (5%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 + + A +P +S V A AGSGKT +L QR L LL P ++ +T T+ AAAEM Sbjct: 7 PDAAARRQALNPHQSFIVQAPAGSGKTELLTQRYLVLLARVEAPEEIVAITFTRKAAAEM 66 Query: 79 SHRVLEII-TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 +R++E + +A + + A T + + D K + P L++QTI Sbjct: 67 RYRIVEALISARENQPPQAEPARTTWELARAVGRRDADK----GWELERHPSRLRIQTID 122 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 + C ++ +Q PL + + I +E ++ L +A ++TL + ++ E + +L Sbjct: 123 SLCASLTRQMPLLSRFGAQPGITEESEN--LYRQAARATLTEV--ESGAEWSASVEVLLR 178 Query: 198 ISNDE--DIETLISDIISNRTAL 218 N++ IETL+S +++ R Sbjct: 179 HLNNDWGKIETLLSAMLARRDQW 201 >gi|290968022|ref|ZP_06559571.1| ATP-dependent nuclease subunit A [Megasphaera genomosp. type_1 str. 28L] gi|290781928|gb|EFD94507.1| ATP-dependent nuclease subunit A [Megasphaera genomosp. type_1 str. 28L] Length = 1217 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 101/224 (45%), Gaps = 33/224 (14%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 ++ T++++ + ++ +SA AGSGKT +LV+R++R LL +P + +L +T TKA Sbjct: 1 MAWTEAQEAAMNSRGQTLLLSAAAGSGKTAVLVERLVRRLLDRQNPIDMTAVLVVTFTKA 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ +TA + + D + LL + Sbjct: 61 AAAEMRERIGAALTAALEAT----------------GRPDAERQLALLP-------AASI 97 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T+H+FC+ +++ + ++ F +A EE+ L ++ + L S EE Y Sbjct: 98 STLHSFCQEVIRTYFYTIDLDPAFRVAGEEELSLLRKQVLEDLLLSYY--EQEEKADVLY 155 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 + ++ E + I RT ++ + S + + + ++ Sbjct: 156 PLADMFGTERGDDNIV-----RTVERMYQYSRSMPFPEQWLRQA 194 >gi|282910543|ref|ZP_06318347.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus WBG10049] gi|282325935|gb|EFB56243.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus WBG10049] Length = 1217 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYETGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199 >gi|242373134|ref|ZP_04818708.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis M23864:W1] gi|242349085|gb|EES40686.1| ATP-dependent nuclease Rex subunit A [Staphylococcus epidermidis M23864:W1] Length = 1218 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 86/219 (39%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R++ R+L LL +T T +A E Sbjct: 11 WTDAQWRSIYAKGQDVLVAAAAGSGKTAVLVERIIQRILRDKIDVDRLLVVTFTNLSARE 70 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S + PN + R + ++ T+H Sbjct: 71 MKHRVDQRIQEASI---------------EDPNNEHLKNQRIKIHQA-------QISTLH 108 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ +I +F ++E ++ L+++ L + + ++ Sbjct: 109 SFCLKLIQQHYDVLDIDPNFRTSNEAENVLLLDQTIDDVLERHYDILDPDFIDLTEQLSS 168 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ND+ +I + FF + + + + Sbjct: 169 DRNDDQFRDIIKRM---------YFFSIANPNPFEWLNQ 198 >gi|290893619|ref|ZP_06556601.1| ATP-dependent nuclease [Listeria monocytogenes FSL J2-071] gi|290556821|gb|EFD90353.1| ATP-dependent nuclease [Listeria monocytogenes FSL J2-071] Length = 1051 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 35/224 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75 T + + V+A AGSGKT +LV R++ L+ N + LL +T T A+A Sbjct: 14 WTDDQWKAIQAKGNNVLVAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + + + G+ P+ + + + LL + T Sbjct: 74 AEMKFRIGKGL---------------EEALGQNPDSAHLKRQVALL-------NYASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194 +H+FC I++++ EA+I F + + +S + +E + L ++NNE Sbjct: 112 LHSFCLEIIRKYYFEADIDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNEAFFHLVES 171 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +D ++ +LIS KL F + +E + Sbjct: 172 FTGDRSDAELHSLIS---------KLYDFSRANPDPNAWLEAMV 206 >gi|126652433|ref|ZP_01724605.1| ATP-dependent nuclease, subunit A [Bacillus sp. B14905] gi|126590704|gb|EAZ84819.1| ATP-dependent nuclease, subunit A [Bacillus sp. B14905] Length = 1238 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 94/223 (42%), Gaps = 30/223 (13%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 +S T + + VSA AGSGKT +L+ R++ ++A +P LL +T T A Sbjct: 12 VSWTDDQWKAIYASGQDTLVSAAAGSGKTAVLINRMIEKVIATDNPINVDELLVVTFTNA 71 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 +AAEM HR +S + K + P + + + L+ ++ Sbjct: 72 SAAEMRHR---------------MSEALEKAIVENPTSNHLRRQLSLI-------NKAQI 109 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T+H+FC AI++Q+ +I F IA+E + L ++ L E +A Y Sbjct: 110 STLHSFCLAIVKQYAYMLDIDPGFRIANEAEVALLRDDIVADVLEGAYDSEEETQIQAIY 169 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +++ + + I +IS KL + ++ + Sbjct: 170 RLVDSFTSDRDDQAIETLIS-----KLYDTSRVHAEPQRWLRS 207 >gi|49483127|ref|YP_040351.1| hypothetical protein SAR0929 [Staphylococcus aureus subsp. aureus MRSA252] gi|81651446|sp|Q6GIC1|ADDA_STAAR RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|49241256|emb|CAG39935.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] Length = 1217 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYETGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199 >gi|282905282|ref|ZP_06313139.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus Btn1260] gi|282331689|gb|EFB61201.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus Btn1260] Length = 1217 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYETGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199 >gi|257425017|ref|ZP_05601444.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus 55/2053] gi|257427682|ref|ZP_05604081.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus 65-1322] gi|257430317|ref|ZP_05606700.1| exonuclease RexA [Staphylococcus aureus subsp. aureus 68-397] gi|257433014|ref|ZP_05609374.1| exonuclease RexA [Staphylococcus aureus subsp. aureus E1410] gi|257435918|ref|ZP_05611966.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus M876] gi|282913739|ref|ZP_06321528.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus subsp. aureus M899] gi|282923655|ref|ZP_06331335.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus C101] gi|293500781|ref|ZP_06666632.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus 58-424] gi|293509732|ref|ZP_06668443.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus M809] gi|293524319|ref|ZP_06671006.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus subsp. aureus M1015] gi|257272587|gb|EEV04710.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus 55/2053] gi|257275875|gb|EEV07348.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus 65-1322] gi|257279094|gb|EEV09705.1| exonuclease RexA [Staphylococcus aureus subsp. aureus 68-397] gi|257282429|gb|EEV12564.1| exonuclease RexA [Staphylococcus aureus subsp. aureus E1410] gi|257285109|gb|EEV15228.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus M876] gi|282314523|gb|EFB44913.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus C101] gi|282322771|gb|EFB53093.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus subsp. aureus M899] gi|290921282|gb|EFD98343.1| ATP-dependent deoxyribonuclease subunit A [Staphylococcus aureus subsp. aureus M1015] gi|291095786|gb|EFE26047.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus 58-424] gi|291467829|gb|EFF10344.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus M809] Length = 1217 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYETGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199 >gi|119475989|ref|ZP_01616341.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2143] gi|119450616|gb|EAW31850.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2143] Length = 1153 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 9/203 (4%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 +++ A DP+ S V+A AGSGKT +L QRVLRLL P +L +T T+ AAAEM Sbjct: 6 DNEQRVKALDPSCSVCVTAPAGSGKTELLSQRVLRLLATVGQPEEILAITFTRKAAAEMH 65 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 HR+++ + S L + K+ + + + + + ++LE G LK+QTI + Sbjct: 66 HRIIQALRDASTLDQ---PHQSHKLLSWQLARQVLDRDQEHGWSLLENTGRLKIQTIDSL 122 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 + +Q P+ +N + I++ Q A L L+ + +L Sbjct: 123 SAHLTRQMPILSNFGAQPKISEYPQQC--YRAAVHGFLD--YLETDTVYADDLSNLLTHV 178 Query: 200 NDE--DIETLISDIISNRTALKL 220 ++ +E L+ ++ R L Sbjct: 179 DNNIGRLERLLITMLQRRDQWLL 201 >gi|282903504|ref|ZP_06311395.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus C160] gi|282908262|ref|ZP_06316093.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282918665|ref|ZP_06326402.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus C427] gi|283957705|ref|ZP_06375158.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus A017934/97] gi|295427450|ref|ZP_06820085.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus EMRSA16] gi|282317799|gb|EFB48171.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus C427] gi|282327927|gb|EFB58209.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282596459|gb|EFC01420.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus C160] gi|283791156|gb|EFC29971.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus A017934/97] gi|295128838|gb|EFG58469.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus EMRSA16] gi|312438670|gb|ADQ77741.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus TCH60] gi|315194499|gb|EFU24891.1| hypothetical protein CGSSa00_12270 [Staphylococcus aureus subsp. aureus CGS00] Length = 1217 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYETGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199 >gi|331005026|ref|ZP_08328431.1| ATP-dependent DNA helicase pcrA [gamma proteobacterium IMCC1989] gi|330421154|gb|EGG95415.1| ATP-dependent DNA helicase pcrA [gamma proteobacterium IMCC1989] Length = 1260 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 60/224 (26%), Positives = 103/224 (45%), Gaps = 10/224 (4%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 + E+ A D + S VSA AGSGKT +L QRVL LL P +L +T TK AAAEM Sbjct: 14 DQPERTRALDTSTSFAVSAPAGSGKTGLLTQRVLALLAQCEEPENVLAITFTKKAAAEMQ 73 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+L+ + + E + + ++ +++ + P L++ TI + Sbjct: 74 ARILDALRHAEQHTTEPEEDYLKT--TWRLARAVLARNTEKEWQLFSCPNRLRITTIDSL 131 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C +I QQ P E+ + I D + A + TLA + N+ L++ +++ Sbjct: 132 CRSISQQMPFESKLGHTPEILDNPN--LAYQMAARETLAQLNTQND--LQEHLIYLVKHV 187 Query: 200 NDE--DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +++ IETL+ ++ R + F +R +E L + Sbjct: 188 DNKLDTIETLLIQLLGKRDQWLPVLF--QSKDQRGALEAILVDV 229 >gi|297590190|ref|ZP_06948829.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus MN8] gi|297576489|gb|EFH95204.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus MN8] Length = 1217 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYETGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199 >gi|2625021|gb|AAC46278.1| DNA helicase II [Serratia marcescens] Length = 720 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSDLLDSLNEKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ LEAN+ F I D + +L+ K + ++ +D + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLEANLPQDFQILDSDDQLRLL----KRIIKALNVDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGKKDEGLR 155 >gi|323443832|gb|EGB01444.1| ATP-dependent nuclease subunit A [Staphylococcus aureus O46] Length = 1217 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYTTGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199 >gi|315652079|ref|ZP_07905080.1| ATP-dependent deoxyribonuclease subunit A [Eubacterium saburreum DSM 3986] gi|315485726|gb|EFU76107.1| ATP-dependent deoxyribonuclease subunit A [Eubacterium saburreum DSM 3986] Length = 1152 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 96/221 (43%), Gaps = 30/221 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T+++Q S VSA AGSGKT +LV+R+++ + N +P TLL +T T+AAA Sbjct: 2 WTEAQQAAIDIKKGSILVSAAAGSGKTAVLVERIIKKITDNENPIDVDTLLVMTFTRAAA 61 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 A M ++ + E+ K + + + LL + ++ T Sbjct: 62 ASMKEKIYNALL-----------KEMEKHEKDTKEFKRLKEQSVLLASA-------RIMT 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +FC +I+++ + +I F++ADE + L + L S E K F E+ Sbjct: 104 TDSFCLSIIRENIDKIDIDPAFSVADESEISLLKADTMDELLES----EYEAASKDFMEL 159 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + IS+ I KL F S W + ++ Sbjct: 160 SDAFANSKGDKSISEFIE-----KLYRFAVSKPWPLEWLDS 195 >gi|283770033|ref|ZP_06342925.1| ATP-dependent helicase/nuclease subunit A [Staphylococcus aureus subsp. aureus H19] gi|283460180|gb|EFC07270.1| ATP-dependent helicase/nuclease subunit A [Staphylococcus aureus subsp. aureus H19] Length = 1217 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYETGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPDPTNWLDQ 199 >gi|255030234|ref|ZP_05302185.1| hypothetical protein LmonL_16176 [Listeria monocytogenes LO28] Length = 218 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 35/224 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75 T + + V+A AGSGKT +LV R++ L+ N + LL +T T A+A Sbjct: 14 WTDDQWKAIQAKGNNVLVAAAAGSGKTAVLVTRIIEKLIDESANLNVDELLIVTFTNASA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + + + G+ P+ + + + LL + T Sbjct: 74 AEMKFRIGKGL---------------EEALGQNPDSAHLKRQVALL-------NYASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194 +H+FC I++++ EA+I F + + +S + +E + L ++NNE Sbjct: 112 LHSFCLEIIRKYYFEADIDPSFRLIEPIESSMIRDEVLEGLLEQEYGIENNEAFFHLVES 171 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +D ++ +LIS KL F + +E + Sbjct: 172 FTGDRSDAELHSLIS---------KLYDFSRANPDPNAWLEAMV 206 >gi|313632207|gb|EFR99276.1| ATP-dependent nuclease subunit A [Listeria seeligeri FSL N1-067] Length = 1236 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 95/232 (40%), Gaps = 35/232 (15%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPST 64 Q E + + T + + V+A AGSGKT +LV R++ L+ N + Sbjct: 3 QLIPEKPNDSTWTDDQWKAIQADGENILVAAAAGSGKTAVLVTRIIEKLINEKSNWNVDE 62 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 LL +T T A+AAEM R+ + + + P+ + + K +L Sbjct: 63 LLIVTFTNASAAEMKFRIGKAL---------------EDELAQDPDSAHLKKQVAML--- 104 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LD 183 + T+H+FC I+++ EA+I +F + + +S + +E ++ L ++ Sbjct: 105 ----NYASISTLHSFCLEIIRKHYFEADIDPNFRLIEPIESSMIRDEVLENLLEEAYSIE 160 Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 NN + +D ++ LIS KL F + + +E Sbjct: 161 NNNDFFHLVESFTGDRSDTELHMLIS---------KLYDFSRANPSPDEWLE 203 >gi|253731575|ref|ZP_04865740.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724818|gb|EES93547.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 1217 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199 >gi|157368435|ref|YP_001476424.1| DNA-dependent helicase II [Serratia proteamaculans 568] gi|157320199|gb|ABV39296.1| DNA helicase II [Serratia proteamaculans 568] Length = 723 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 5 DVSDLLDSLNEKQREAVAA--PRGNLLVLAGAGSGKTRVLVHRIAWLLAVENCSPYSIMA 62 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 63 VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 84 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+AN+ F I D + +L++ K ++ +D + Sbjct: 85 QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQFRLLKRIVK----ALNIDEKQW 140 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 PPRQAMWYINGKKDEGLR 158 >gi|322834927|ref|YP_004214954.1| DNA helicase II [Rahnella sp. Y9602] gi|321170128|gb|ADW75827.1| DNA helicase II [Rahnella sp. Y9602] Length = 720 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + P +++ Sbjct: 2 DVSDLLDSLNEKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLAVEKCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++I + Sbjct: 60 VTFTNKAAAEMRHRIDQLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+AN+ F I D + +LI K + ++ +D+ + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQIRLI----KRLIKALNIDDKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGKKDEGLR 155 >gi|298694207|gb|ADI97429.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus ED133] Length = 1217 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199 >gi|194290034|ref|YP_002005941.1| helicase, uvrd subfamily [Cupriavidus taiwanensis LMG 19424] gi|193223869|emb|CAQ69878.1| Putative helicase, uvrD subfamily [Cupriavidus taiwanensis LMG 19424] Length = 1213 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 56/195 (28%), Positives = 97/195 (49%), Gaps = 3/195 (1%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 A DP RS V A AGSGKT +LV R++RLLLA A P +L +T T+ AA EM R+LE Sbjct: 26 RAACDPARSVVVEACAGSGKTWLLVARLVRLLLAGAAPHEILAITFTRKAAEEMRDRLLE 85 Query: 85 IITAWSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 ++ + D++++A + + + + +AR L +L PG + + T H + + Sbjct: 86 VLAQLARDSDDDVIAALVQRGLCADAAREALPRARRLHAQVLAAPGRMAIDTFHGWFGTL 145 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ PL + I A+ E + ++ EA ++ EL+ A+ +++ D Sbjct: 146 LRGAPLASGIVPGAAL--REDALRMKREAWAPVWRALATPPYAELRAAWETLVDTVGDFQ 203 Query: 204 IETLISDIISNRTAL 218 L+ + R+ Sbjct: 204 ARALLDAMFHARSEW 218 >gi|329733963|gb|EGG70285.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus 21193] Length = 1217 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199 >gi|253732675|ref|ZP_04866840.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp. aureus TCH130] gi|253729286|gb|EES98015.1| ATP-dependent nuclease Rex subunit A [Staphylococcus aureus subsp. aureus TCH130] Length = 1217 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199 >gi|302332580|gb|ADL22773.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus JKD6159] Length = 1217 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199 >gi|15923957|ref|NP_371491.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus Mu50] gi|15926556|ref|NP_374089.1| hypothetical protein SA0828 [Staphylococcus aureus subsp. aureus N315] gi|148267401|ref|YP_001246344.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus JH9] gi|150393454|ref|YP_001316129.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus JH1] gi|156979293|ref|YP_001441552.1| hypothetical protein SAHV_0962 [Staphylococcus aureus subsp. aureus Mu3] gi|253316128|ref|ZP_04839341.1| hypothetical protein SauraC_08287 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255005757|ref|ZP_05144358.2| hypothetical protein SauraM_04790 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795298|ref|ZP_05644277.1| recombination helicase AddA [Staphylococcus aureus A9781] gi|258406947|ref|ZP_05680100.1| recombination helicase AddA [Staphylococcus aureus A9763] gi|258421915|ref|ZP_05684836.1| recombination helicase AddA [Staphylococcus aureus A9719] gi|258435312|ref|ZP_05689051.1| recombination helicase AddA [Staphylococcus aureus A9299] gi|258441524|ref|ZP_05690884.1| ATP-dependent nuclease subunit A [Staphylococcus aureus A8115] gi|258447223|ref|ZP_05695372.1| recombination helicase AddA [Staphylococcus aureus A6300] gi|258449983|ref|ZP_05698081.1| recombination helicase AddA [Staphylococcus aureus A6224] gi|269202582|ref|YP_003281851.1| exonuclease RexA [Staphylococcus aureus subsp. aureus ED98] gi|282893994|ref|ZP_06302225.1| recombination helicase AddA [Staphylococcus aureus A8117] gi|282927190|ref|ZP_06334812.1| recombination helicase AddA [Staphylococcus aureus A10102] gi|295405773|ref|ZP_06815582.1| recombination helicase AddA [Staphylococcus aureus A8819] gi|296276179|ref|ZP_06858686.1| exonuclease RexA [Staphylococcus aureus subsp. aureus MR1] gi|297245364|ref|ZP_06929235.1| recombination helicase AddA [Staphylococcus aureus A8796] gi|81705953|sp|Q7A6H4|ADDA_STAAN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|81781869|sp|Q99VC3|ADDA_STAAM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|251764537|sp|A6U074|ADDA_STAA2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|251764554|sp|A5IRE5|ADDA_STAA9 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|251764555|sp|A7X0I2|ADDA_STAA1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|13700771|dbj|BAB42067.1| SA0828 [Staphylococcus aureus subsp. aureus N315] gi|14246736|dbj|BAB57129.1| similar to ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus Mu50] gi|147740470|gb|ABQ48768.1| DNA helicase/exodeoxyribonuclease V, subunit A [Staphylococcus aureus subsp. aureus JH9] gi|149945906|gb|ABR51842.1| Recombination helicase AddA [Staphylococcus aureus subsp. aureus JH1] gi|156721428|dbj|BAF77845.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257789270|gb|EEV27610.1| recombination helicase AddA [Staphylococcus aureus A9781] gi|257841486|gb|EEV65927.1| recombination helicase AddA [Staphylococcus aureus A9763] gi|257842248|gb|EEV66676.1| recombination helicase AddA [Staphylococcus aureus A9719] gi|257848973|gb|EEV72956.1| recombination helicase AddA [Staphylococcus aureus A9299] gi|257852314|gb|EEV76240.1| ATP-dependent nuclease subunit A [Staphylococcus aureus A8115] gi|257853971|gb|EEV76925.1| recombination helicase AddA [Staphylococcus aureus A6300] gi|257856903|gb|EEV79806.1| recombination helicase AddA [Staphylococcus aureus A6224] gi|262074872|gb|ACY10845.1| exonuclease RexA [Staphylococcus aureus subsp. aureus ED98] gi|282590879|gb|EFB95954.1| recombination helicase AddA [Staphylococcus aureus A10102] gi|282763480|gb|EFC03609.1| recombination helicase AddA [Staphylococcus aureus A8117] gi|285816646|gb|ADC37133.1| ATP-dependent nuclease, subunit A [Staphylococcus aureus 04-02981] gi|294969208|gb|EFG45228.1| recombination helicase AddA [Staphylococcus aureus A8819] gi|297177667|gb|EFH36917.1| recombination helicase AddA [Staphylococcus aureus A8796] gi|312829364|emb|CBX34206.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130452|gb|EFT86439.1| hypothetical protein CGSSa03_03488 [Staphylococcus aureus subsp. aureus CGS03] gi|329728233|gb|EGG64672.1| helicase-exonuclease AddAB, AddA subunit [Staphylococcus aureus subsp. aureus 21172] Length = 1217 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199 >gi|49485743|ref|YP_042964.1| hypothetical protein SAS0837 [Staphylococcus aureus subsp. aureus MSSA476] gi|297208398|ref|ZP_06924828.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus ATCC 51811] gi|81649660|sp|Q6GAV9|ADDA_STAAS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|49244186|emb|CAG42612.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|296887137|gb|EFH26040.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 1217 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199 >gi|258455496|ref|ZP_05703455.1| recombination helicase AddA [Staphylococcus aureus A5937] gi|257862314|gb|EEV85083.1| recombination helicase AddA [Staphylococcus aureus A5937] Length = 1217 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199 >gi|21282578|ref|NP_645666.1| hypothetical protein MW0849 [Staphylococcus aureus subsp. aureus MW2] gi|300912474|ref|ZP_07129917.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus TCH70] gi|81762665|sp|Q8NXE9|ADDA_STAAW RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|21204016|dbj|BAB94714.1| MW0849 [Staphylococcus aureus subsp. aureus MW2] gi|300886720|gb|EFK81922.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus TCH70] Length = 1217 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199 >gi|57651659|ref|YP_185840.1| exonuclease RexA [Staphylococcus aureus subsp. aureus COL] gi|88194662|ref|YP_499458.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221050|ref|YP_001331872.1| exonuclease RexA [Staphylococcus aureus subsp. aureus str. Newman] gi|221142113|ref|ZP_03566606.1| exonuclease RexA [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258452081|ref|ZP_05700097.1| exonuclease RexA [Staphylococcus aureus A5948] gi|262052141|ref|ZP_06024349.1| hypothetical protein SA930_1464 [Staphylococcus aureus 930918-3] gi|282922247|ref|ZP_06329942.1| recombination helicase AddA [Staphylococcus aureus A9765] gi|304381479|ref|ZP_07364129.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694859|sp|Q5HHB7|ADDA_STAAC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|122539894|sp|Q2FZT5|ADDA_STAA8 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|251764538|sp|A6QFH8|ADDA_STAAE RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|57285845|gb|AAW37939.1| exonuclease RexA [Staphylococcus aureus subsp. aureus COL] gi|87202220|gb|ABD30030.1| ATP-dependent nuclease subunit A, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373850|dbj|BAF67110.1| exonuclease RexA [Staphylococcus aureus subsp. aureus str. Newman] gi|257860296|gb|EEV83128.1| exonuclease RexA [Staphylococcus aureus A5948] gi|259159960|gb|EEW44996.1| hypothetical protein SA930_1464 [Staphylococcus aureus 930918-3] gi|269940469|emb|CBI48846.1| putative helicase [Staphylococcus aureus subsp. aureus TW20] gi|282593537|gb|EFB98531.1| recombination helicase AddA [Staphylococcus aureus A9765] gi|302750795|gb|ADL64972.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339842|gb|EFM05786.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|329313635|gb|AEB88048.1| ATP-dependent helicase/nuclease subunit A [Staphylococcus aureus subsp. aureus T0131] gi|329726247|gb|EGG62717.1| ATP-dependent nuclease subunit A [Staphylococcus aureus subsp. aureus 21189] Length = 1217 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199 >gi|82750584|ref|YP_416325.1| ATP-dependent nuclease subunit A [Staphylococcus aureus RF122] gi|123548876|sp|Q2YWW4|ADDA_STAAB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|82656115|emb|CAI80524.1| ATP-dependent nuclease subunit A [Staphylococcus aureus RF122] Length = 1217 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLDQ 199 >gi|327395987|dbj|BAK13409.1| DNA helicase II UvrD [Pantoea ananatis AJ13355] Length = 720 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + + + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSELLDGLNDKQRKAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++I + Sbjct: 60 VTFTNKAAAEMRHRIEQLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+A + F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PARQGMWYINGKKDEGLR 155 >gi|188026352|ref|ZP_02961779.2| hypothetical protein PROSTU_03845 [Providencia stuartii ATCC 25827] gi|188020076|gb|EDU58116.1| hypothetical protein PROSTU_03845 [Providencia stuartii ATCC 25827] Length = 723 Score = 158 bits (399), Expect = 8e-37, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ++ ++ + E + A P + V A AGSGKT +LV R+ L+ + +A P +++ Sbjct: 5 DVSYLLEGLNDKQREAVAA--PRTNLLVLAGAGSGKTRVLVHRIAWLMAVEHASPFSIMA 62 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++I + + Sbjct: 63 VTFTNKAAAEMRHRINQLIGS--------------------------------------S 84 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++Q L+A + F I D + +LI + L ++ LD + Sbjct: 85 EGGMWIGTFHGLAHRLLRQHYLDAGLPQDFQILDSDDQYRLI----RRLLKAMNLDEKQW 140 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 PPRQGMWYINGKKDEGLR 158 >gi|330427295|gb|AEC18629.1| putative nuclease/helicase [Pusillimonas sp. T7-7] Length = 1119 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 109/224 (48%), Gaps = 15/224 (6%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 + A +PTRS + A AGSGKT +L R+L LL P ++ +T T+ AA+EM RVL Sbjct: 12 RAAAINPTRSFLIQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAASEMHARVL 71 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + A E E K++G + ++ + + + L +L+ P + ++TI +FC + Sbjct: 72 AKLKAGQGPQPE----EPYKLRGWQLARAVLQRDQQLGWDLLDYPARMSIRTIDSFCTWL 127 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ P +++ +I D +++ E A ++TL+ M D N + + + Sbjct: 128 VRAMPWLSSLGGVPSITDN--AREHYEAAAQATLS--MADENAAVAGLIAHM--DVDVRA 181 Query: 204 IETLISDIISNRTALKLIFFFFSYL-----WRRKIIEKSLWSIA 242 + L++D++++R + + + IE L ++A Sbjct: 182 AQGLLADMLASRDQWLPLLGQRADIDLLLENLDSAIEADLVALA 225 >gi|212710171|ref|ZP_03318299.1| hypothetical protein PROVALCAL_01225 [Providencia alcalifaciens DSM 30120] gi|212687170|gb|EEB46698.1| hypothetical protein PROVALCAL_01225 [Providencia alcalifaciens DSM 30120] Length = 723 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ++ ++ + E + A P + V A AGSGKT +LV R+ L+ + NA P +++ Sbjct: 5 DVSYLLEGLNDKQREAVAA--PRTNLLVLAGAGSGKTRVLVHRIAWLMSVENASPFSIMA 62 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 63 VTFTNKAAAEMRHRINQLVGT--------------------------------------S 84 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++Q L+AN+ F I D + +LI + L ++ LD + Sbjct: 85 EGGMWIGTFHGLAHRLLRQHYLDANLPQDFQILDSDDQYRLI----RRLLKAMNLDEKQW 140 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 PPRQGMWYINGKKDEGLR 158 >gi|254853388|ref|ZP_05242736.1| ATP-dependent nuclease [Listeria monocytogenes FSL R2-503] gi|300763922|ref|ZP_07073918.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL N1-017] gi|258606756|gb|EEW19364.1| ATP-dependent nuclease [Listeria monocytogenes FSL R2-503] gi|300515263|gb|EFK42314.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL N1-017] Length = 1234 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 35/224 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75 T + + V+A AGSGKT +LV R++ L+ N + LL +T T A+A Sbjct: 14 WTDDQWKAIQAEGNNVLVAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + + + + P+ + + + LL + T Sbjct: 74 AEMKFRIGKGL---------------EEALAQNPDSTHLKRQVALL-------NYASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194 +H+FC I++++ +A+I +F + + +S + +E ++ L ++NNE Sbjct: 112 LHSFCLEIIRKYYFDADIDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNEPFFHLVES 171 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +D ++ LIS KL F + +E+ + Sbjct: 172 FTGDRSDAELHALIS---------KLYDFSRANPDPNIWLEEMV 206 >gi|312869874|ref|ZP_07730014.1| ATP-dependent nuclease subunit A [Lactobacillus oris PB013-T2-3] gi|311094614|gb|EFQ52918.1| ATP-dependent nuclease subunit A [Lactobacillus oris PB013-T2-3] Length = 1386 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 32/223 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77 T ++Q SD ++ VSA+AGSGKT +LV R + L+ A +L +T T AAA Sbjct: 6 PTPAQQQAISDRDQNIIVSASAGSGKTAVLVNRAVDLIKEGRATVDRMLLVTFTDAAAKN 65 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M ++ + + + + R L+ + + TIH Sbjct: 66 MRDKIRQRMQEVAQAEP---------------------RLRDLMNEQVNRLAVADISTIH 104 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML---DNNEELKKAFYE 194 AFC +++++ + F + ++ + L++E + D + +F + Sbjct: 105 AFCLKLIKRYYFLIGLDPQFRLLTDDTERLLLQEDVLHQVNEQFYASADEESDDSASFGQ 164 Query: 195 I-LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + L S+D D + L +D++ LKL+ + + + + Sbjct: 165 LVLNFSSDRDDQGL-NDLV-----LKLMEIANAQPDPEQWLAQ 201 >gi|254931621|ref|ZP_05264980.1| ATP-dependent nuclease [Listeria monocytogenes HPB2262] gi|293583174|gb|EFF95206.1| ATP-dependent nuclease [Listeria monocytogenes HPB2262] Length = 1235 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 35/224 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75 T + + V+A AGSGKT +LV R++ L+ N + LL +T T A+A Sbjct: 14 WTDDQWKAIQAEGNNVLVAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + + + + P+ + + + LL + T Sbjct: 74 AEMKFRIGKGL---------------EEALAQNPDSTHLKRQVALL-------NYASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194 +H+FC I++++ +A+I +F + + +S + +E ++ L ++NNE Sbjct: 112 LHSFCLEIIRKYYFDADIDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNEPFFHLVES 171 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +D ++ LIS KL F + +E+ + Sbjct: 172 FTGDRSDAELHALIS---------KLYDFSRANPDPNIWLEEMV 206 >gi|271502378|ref|YP_003335404.1| DNA helicase II [Dickeya dadantii Ech586] gi|270345933|gb|ACZ78698.1| DNA helicase II [Dickeya dadantii Ech586] Length = 720 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D ++ + + + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSDLLDSLNDKQRDAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLTVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIDQLLGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+A + F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKALNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGKKDEGLR 155 >gi|254825170|ref|ZP_05230171.1| ATP-dependent nuclease [Listeria monocytogenes FSL J1-194] gi|255519745|ref|ZP_05386982.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes FSL J1-175] gi|293594413|gb|EFG02174.1| ATP-dependent nuclease [Listeria monocytogenes FSL J1-194] Length = 1235 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 35/224 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75 T + + V+A AGSGKT +LV R++ L+ N + LL +T T A+A Sbjct: 14 WTDDQWKAIQAEGNNVLVAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + + + + P+ + + + LL + T Sbjct: 74 AEMKFRIGKGL---------------EEALAQNPDSTHLKRQVALL-------NYASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194 +H+FC I++++ +A+I +F + + +S + +E ++ L ++NNE Sbjct: 112 LHSFCLEIIRKYYFDADIDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNEPFFHLVES 171 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +D ++ LIS KL F + +E+ + Sbjct: 172 FTGDRSDAELHALIS---------KLYDFSRANPDPNIWLEEMV 206 >gi|226224875|ref|YP_002758982.1| ATP-dependent deoxyribonuclease (subunit A) [Listeria monocytogenes Clip81459] gi|225877337|emb|CAS06051.1| Putative ATP-dependent deoxyribonuclease (subunit A) [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 1235 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 35/224 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75 T + + V+A AGSGKT +LV R++ L+ N + LL +T T A+A Sbjct: 14 WTDDQWKAIQAEGNNVLVAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + + + + P+ + + + LL + T Sbjct: 74 AEMKFRIGKGL---------------EEALAQNPDSTHLKRQVALL-------NYASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194 +H+FC I++++ +A+I +F + + +S + +E ++ L ++NNE Sbjct: 112 LHSFCLEIIRKYYFDADIDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNEPFFHLVES 171 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +D ++ LIS KL F + +E+ + Sbjct: 172 FTGDRSDAELHALIS---------KLYDFSRANPDPNIWLEEMV 206 >gi|46908500|ref|YP_014889.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes str. 4b F2365] gi|81565413|sp|Q71X99|ADDA_LISMF RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|46881772|gb|AAT05066.1| ATP-dependent nuclease, subunit A [Listeria monocytogenes serotype 4b str. F2365] Length = 1235 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 35/224 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75 T + + V+A AGSGKT +LV R++ L+ N + LL +T T A+A Sbjct: 14 WTDDQWKAIQAEGNNVLVAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + + + + P+ + + + LL + T Sbjct: 74 AEMKFRIGKGL---------------EEALAQNPDSTHLKRQVALL-------NYASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194 +H+FC I++++ +A+I +F + + +S + +E ++ L ++NNE Sbjct: 112 LHSFCLEIIRKYYFDADIDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNEPFFHLVES 171 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +D ++ LIS KL F + +E+ + Sbjct: 172 FTGDRSDAELHALIS---------KLYDFSRANPDPNIWLEEMV 206 >gi|238793575|ref|ZP_04637199.1| DNA helicase II [Yersinia intermedia ATCC 29909] gi|238727165|gb|EEQ18695.1| DNA helicase II [Yersinia intermedia ATCC 29909] Length = 720 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + NA P +++ Sbjct: 2 DVSDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ ++AN+ F I D + +L++ K ++ LD+ + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVK----ALNLDDKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGKKDEGLR 155 >gi|289435607|ref|YP_003465479.1| ATP-dependent nuclease, subunit A [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171851|emb|CBH28397.1| ATP-dependent nuclease, subunit A [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 1236 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 95/232 (40%), Gaps = 35/232 (15%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPST 64 Q E + + T + + V+A AGSGKT +LV R++ L+ N + Sbjct: 3 QLIPEKPNDSTWTDDQWKAIQADGENILVAAAAGSGKTAVLVTRIIEKLINEKSNWNVDE 62 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 LL +T T A+AAEM R+ + + + P+ + + K +L Sbjct: 63 LLIVTFTNASAAEMKFRIGKAL---------------EDELAQNPDSAHLKKQVAML--- 104 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LD 183 + T+H+FC I+++ EA+I +F + + +S + +E ++ L ++ Sbjct: 105 ----NYASISTLHSFCLEIIRKHYFEADIDPNFRLIEPIESSMIRDEVLENLLEKAYSIE 160 Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 NN + +D ++ LIS KL F + + +E Sbjct: 161 NNNDFFHLVESFTGDRSDTELHMLIS---------KLYDFSRANPSPDEWLE 203 >gi|238756289|ref|ZP_04617604.1| DNA helicase II [Yersinia ruckeri ATCC 29473] gi|238705495|gb|EEP97897.1| DNA helicase II [Yersinia ruckeri ATCC 29473] Length = 720 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + NA P +++ Sbjct: 2 DVSDLLDSLNEKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+AN+ F I D + +L++ K ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQHRLLKRIVK----ALNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGKKDEGLR 155 >gi|239636506|ref|ZP_04677508.1| ATP-dependent nuclease subunit A [Staphylococcus warneri L37603] gi|239597861|gb|EEQ80356.1| ATP-dependent nuclease subunit A [Staphylococcus warneri L37603] Length = 1220 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R++ R+L LL +T T +A E Sbjct: 11 WTDAQWRSIYAKGQDTLVAAAAGSGKTAVLVERIIQRILRDEIDVDRLLVVTFTNLSARE 70 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S + PN + R + ++ T+H Sbjct: 71 MKHRVDQRIQQASI---------------EDPNNEHLKNQRIKIHQT-------QISTLH 108 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ +I +F + E ++ L+E+ L N + ++ Sbjct: 109 SFCLKLIQQHYDVLDIDPNFRTSSEAENILLLEQTIDEVLEQHYDKLNPDFIDLTEQLSN 168 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +D +I +L FF + + + + Sbjct: 169 DRSDTQFRNIIK---------QLYFFSIANPDPFQWLNQ 198 >gi|323440877|gb|EGA98585.1| ATP-dependent nuclease subunit A [Staphylococcus aureus O11] Length = 1217 Score = 157 bits (398), Expect = 1e-36, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R+++ +L LL +T T +A E Sbjct: 12 WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + + + Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPNPTNWLNQ 199 >gi|16801431|ref|NP_471699.1| hypothetical protein lin2368 [Listeria innocua Clip11262] gi|81595220|sp|Q929A9|ADDA_LISIN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|16414891|emb|CAC97595.1| lin2368 [Listeria innocua Clip11262] Length = 1235 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 35/224 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAA 75 T + + V+A AGSGKT +LV R++ L+ N + LL +T T +A Sbjct: 14 WTDDQWKAIQANGNNILVAAAAGSGKTAVLVTRIIEKLINETENLNVDELLIVTFTNVSA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM +R+ + + + + P + K LL + T Sbjct: 74 AEMKYRIGKSL---------------EEALVQNPESVHLKKQVALL-------NYASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194 +H+FC I+++ EA+I +F + + +S + +E + L ++NNE Sbjct: 112 LHSFCLEIIRKHYFEADIDPNFRLIEPIESSMIRDEVLEDLLEKEYSIENNEGFFHLVES 171 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +D ++ TLIS KL F + +E+ + Sbjct: 172 FTGDRSDAELHTLIS---------KLYDFSRANPNPDLWLEQMV 206 >gi|315304458|ref|ZP_07874741.1| ATP-dependent nuclease subunit A [Listeria ivanovii FSL F6-596] gi|313627172|gb|EFR96022.1| ATP-dependent nuclease subunit A [Listeria ivanovii FSL F6-596] Length = 1236 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 33/224 (14%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAA 74 + T + ++ V+A AGSGKT +LV R++ L+ + LL +T T A+ Sbjct: 13 TWTDDQWKAIQADGKNILVAAAAGSGKTAVLVTRIIEKLIDETVKWNVDELLIVTFTNAS 72 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM R+ + + + + P+ + + K LL + Sbjct: 73 AAEMKFRIGKAL---------------EEALVQNPDSAHLKKQVALL-------NYASIS 110 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+H+FC I+++ EA+I +F + + +S + +E + L + + +F+ Sbjct: 111 TLHSFCLEIIRKHYFEADIDPNFRLIEPIESSMIRDEVLEDLLEEAYGIKDND---SFFH 167 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +++ + +T + +IS KL F + +EK + Sbjct: 168 LVDSFTGDRTDTELHILIS-----KLYDFSRANPEPDIWLEKMV 206 >gi|242237694|ref|YP_002985875.1| DNA-dependent helicase II [Dickeya dadantii Ech703] gi|242129751|gb|ACS84053.1| DNA helicase II [Dickeya dadantii Ech703] Length = 720 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D ++ + + + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSDLLDSLNDKQRDAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLTVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++I + Sbjct: 60 VTFTNKAAAEMRHRIDQLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+A + F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKALNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGKKDEGLR 155 >gi|73667245|ref|YP_303261.1| UvrD/REP helicase [Ehrlichia canis str. Jake] gi|72394386|gb|AAZ68663.1| UvrD/REP helicase [Ehrlichia canis str. Jake] Length = 854 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 14/192 (7%) Query: 26 LASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 +A++P + W+SA+AG+GKT LV RVLRLL+ +LCLT T AAA EM+ R+ Sbjct: 4 IATNPFYNFIWISASAGTGKTRTLVNRVLRLLITGHK--NILCLTFTNAAAHEMTERIHS 61 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I++ W+ L +E L E+ I ++ +AR L + L ++TIH+FC ++ Sbjct: 62 ILSTWTILKNEELKKELQDIIPTNITLTEYKRARELFNNLQNL--SLSIKTIHSFCYQLI 119 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204 FP+E I+ + I D E+ ++ ++ +K F I + I Sbjct: 120 STFPIETGISPNCTIKD-------FSESFSKIFYKLL--HDPTIKDHFSAISHEITETTI 170 Query: 205 ETLISDIISNRT 216 L+ I+S + Sbjct: 171 YELLYKILSKQD 182 >gi|282600070|ref|ZP_05972885.2| DNA helicase II [Providencia rustigianii DSM 4541] gi|282566938|gb|EFB72473.1| DNA helicase II [Providencia rustigianii DSM 4541] Length = 764 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 82/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ++ ++ + E + A P + V A AGSGKT +LV R+ L+ + NA P +++ Sbjct: 46 DVSYLLEGLNDKQREAVAA--PRTNLLVLAGAGSGKTRVLVHRIAWLMSVENASPFSIMA 103 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 104 VTFTNKAAAEMRHRINHLIGT--------------------------------------S 125 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++Q L+AN+ F I D + +LI + L ++ LD + Sbjct: 126 EGGMWIGTFHGLAHRLLRQHYLDANLPQDFQILDSDDQYRLI----RRLLKAMNLDEKQW 181 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 182 PPRQGMWYINGKKDEGLR 199 >gi|328957498|ref|YP_004374884.1| ATP-dependent deoxyribonuclease subunit A [Carnobacterium sp. 17-4] gi|328673822|gb|AEB29868.1| ATP-dependent deoxyribonuclease subunit A [Carnobacterium sp. 17-4] Length = 1268 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 94/218 (43%), Gaps = 27/218 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T + + + VSA+AGSGKT +LVQRV+ + + + +L +T+T+AAA EM Sbjct: 14 FTDGQWQAIYEEGHNILVSASAGSGKTTVLVQRVIEKIKSGTNVDEMLIVTYTEAAAKEM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ IQ ++SDM RHL + + T+HA Sbjct: 74 KARIQ------------------VAIQEAVTSESDMELKRHL-TRQVTLIHQASISTLHA 114 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC +++++ N+ F + +E L++E+ + + + L F ++ Sbjct: 115 FCLQVIRRYYYLINLDPIFRLLTDETEILLLKESVWEEVREELYGEEDTL---FKDLTAS 171 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +++ + ++D+I L F + +E+ Sbjct: 172 YSNDRSDAGLTDLI-----FSLYEFSRANPRPAVWLEQ 204 >gi|188532376|ref|YP_001906173.1| DNA-dependent helicase II [Erwinia tasmaniensis Et1/99] gi|188027418|emb|CAO95265.1| DNA helicase II [Erwinia tasmaniensis Et1/99] Length = 720 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMAVENCSPHSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++I + Sbjct: 60 VTFTNKAAAEMRHRIEQLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PARQGMWYINGKKDEGLR 155 >gi|291327137|ref|ZP_06127128.2| DNA helicase II [Providencia rettgeri DSM 1131] gi|291311697|gb|EFE52150.1| DNA helicase II [Providencia rettgeri DSM 1131] Length = 723 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ++ ++ + E + A P + V A AGSGKT +LV R+ L+ + NA P +++ Sbjct: 5 DVSYLLEGLNDKQREAVAA--PRTNLLVLAGAGSGKTRVLVHRIAWLMSVENASPFSIMA 62 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++I + Sbjct: 63 VTFTNKAAAEMRHRINQLIGT--------------------------------------S 84 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++Q ++AN+ F I D + +LI + L ++ LD + Sbjct: 85 EGGMWIGTFHGLAHRLLRQHYMDANLPQDFQILDSDDQYRLI----RRLLKAMNLDEKQW 140 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 PPRQGMWYINGKKDEGLR 158 >gi|47092374|ref|ZP_00230164.1| UvrD/REP helicase domain protein [Listeria monocytogenes str. 4b H7858] gi|47019151|gb|EAL09894.1| UvrD/REP helicase domain protein [Listeria monocytogenes str. 4b H7858] Length = 1106 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 35/224 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75 T + + V+A AGSGKT +LV R++ L+ N + LL +T T A+A Sbjct: 14 WTDDQWKAIQAEGNNVLVAAAAGSGKTAVLVTRIIEKLINESANLNVDELLIVTFTNASA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + + + + P+ + + + LL + T Sbjct: 74 AEMKFRIGKGL---------------EEALAQNPDSTHLKRQVALL-------NYASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194 +H+FC I++++ +A+I +F + + +S + +E ++ L ++NNE Sbjct: 112 LHSFCLEIIRKYYFDADIDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNEPFFHLVES 171 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +D ++ LIS KL F + +E+ + Sbjct: 172 FTGDRSDAELHALIS---------KLYDFSRANPDPNIWLEEMV 206 >gi|169335596|ref|ZP_02862789.1| hypothetical protein ANASTE_02011 [Anaerofustis stercorihominis DSM 17244] gi|169258334|gb|EDS72300.1| hypothetical protein ANASTE_02011 [Anaerofustis stercorihominis DSM 17244] Length = 1171 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 91/223 (40%), Gaps = 31/223 (13%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 ++ TKS+ + ++ +SA AG GKT IL R++RL+L L +T T AAA Sbjct: 1 MNWTKSQSDAINTDNKNLLISAGAGCGKTAILTNRIIRLMLEEKTDIDKFLVVTFTNAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 + M ++ +++ + + + + L + + T Sbjct: 61 SGMKEKIRKLLYS---------------------KIKEKNNDKRYLFDQISNLEKANIST 99 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC ++++++ ++ F I D + L++EA +++ Sbjct: 100 LHSFCISVIREYYHLVDVDPAFKIIDSTNANILMDEAFDMLFEDRYKKEDKDFINTSISY 159 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +++E+ + ++ +I FF ++ K + + + Sbjct: 160 SFNADEEEFKNILKEI---------YFFIYNRPNPFKWLREKV 193 >gi|283476681|emb|CAY72510.1| DNA helicase II [Erwinia pyrifoliae DSM 12163] Length = 723 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 5 DVSDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMGVENCSPHSIMA 62 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++I + Sbjct: 63 VTFTNKAAAEMRHRIEQLIGT--------------------------------------S 84 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+AN+ F I D E +L+ K + ++ LD + Sbjct: 85 QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 140 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 PARQGMWYINGKKDEGLR 158 >gi|302879642|ref|YP_003848206.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2] gi|302582431|gb|ADL56442.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2] Length = 1099 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 92/194 (47%), Gaps = 3/194 (1%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 A +P RS V A AGSGKT +LV RV+RLLL P +L +T T+ AA EM R+ + Sbjct: 4 REALNPNRSVVVEACAGSGKTWLLVSRVVRLLLDGVAPGEILAITFTRKAAQEMQARLRD 63 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + D+ + + + +G + + +AR L L + + T H + I+ Sbjct: 64 WLYELAAKDDDFVRDFLVQ-RGVDDVELALPRARLLYQQFLLARPSVTISTFHGWFMQIL 122 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204 Q+ P+ A + E++ +L +EA + L + E ++ + + + Sbjct: 123 QRAPVSAGSAGGVQLV--EKTAQLWQEAWQMFLDELQSAPESETAQSMMVLFKELGLSNT 180 Query: 205 ETLISDIISNRTAL 218 ++L+ + ++ R+ Sbjct: 181 QSLLGNFVNKRSEW 194 >gi|310766136|gb|ADP11086.1| DNA helicase II [Erwinia sp. Ejp617] Length = 720 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMGVENCSPHSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++I + Sbjct: 60 VTFTNKAAAEMRHRIEQLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PARQGMWYINGKKDEGLR 155 >gi|291165683|gb|EFE27731.1| ATP-dependent nuclease subunit A [Filifactor alocis ATCC 35896] Length = 1224 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 99/221 (44%), Gaps = 31/221 (14%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 +S T + + + ++ VSA AGSGKT +LV+R+LR++ + +L +T T AAA Sbjct: 10 VSYTNEQNAVIYEKNKNILVSAAAGSGKTAVLVERILRIVEEERVDINRMLIVTFTNAAA 69 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ S K G+K + + + + + I + T Sbjct: 70 GEMRERI---------------SKAFAKRLGQKGHDTAFLQDQMIKI------SEASIST 108 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++QF A+I+ FA+A E L ++ + L ++ E + F+++ Sbjct: 109 LHSFCIDVLRQFFHAADISPSFAMATEANVSVLKAKSLEEVLE----ESYERGDETFFQL 164 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ + +++ ++ F + + +++ Sbjct: 165 VDAYGGNKSDKAFVELV-----YRIYQFIQGQPYPLEWLKQ 200 >gi|149927015|ref|ZP_01915273.1| hypothetical protein LMED105_09177 [Limnobacter sp. MED105] gi|149824236|gb|EDM83456.1| hypothetical protein LMED105_09177 [Limnobacter sp. MED105] Length = 1078 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 4/210 (1%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 +A +P S V A AGSGKT +L R+ RLLL+ A P +L +T T+ AA EM R+ + Sbjct: 11 IACNPANSVVVEACAGSGKTWLLTARLFRLLLSGARPDQILAITFTRKAAQEMQERLFGL 70 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + + LSD+ LS +T+ +G N+++++KAR L +L G+ + T H + ++ Q Sbjct: 71 LRECALLSDDKLSTLLTE-RGAVANEANLNKARALAGEVLTNSRGVTIDTFHGWFASLCQ 129 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 PL + + ++ + + +L++ EL AF ++ + + Sbjct: 130 MAPLASGFSRQ---SEPTDQTLFWMDMAIDVFTANLLNDQSELLPAFDTLVSQMDRAVVR 186 Query: 206 TLISDIISNRTALKLIFFFFSYLWRRKIIE 235 ++ ++NR A L ++ E Sbjct: 187 QVLQHALTNRVACSLWLHNSEAPPLNRVFE 216 >gi|43295|emb|CAA25043.1| unnamed protein product [Escherichia coli K-12] Length = 258 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|123440590|ref|YP_001004584.1| DNA-dependent helicase II [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087551|emb|CAL10332.1| DNA helicase II [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 720 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + NA P +++ Sbjct: 2 DVSDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ ++AN+ F I D + +L++ K ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGKKDEGLR 155 >gi|312112099|ref|YP_003990415.1| recombination helicase AddA [Geobacillus sp. Y4.1MC1] gi|311217200|gb|ADP75804.1| recombination helicase AddA [Geobacillus sp. Y4.1MC1] Length = 1238 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 33/221 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R+++ + A P LL +T T A+A Sbjct: 14 WTDEQWKAIVADGRDILVAAAAGSGKTAVLVERIIQKITAKEDPVDVDRLLVVTFTNASA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ E I + K+PN + + LL + T Sbjct: 74 SEMKTRIAE---------------AIERELDKQPNSLHLRRQLSLL-------NRASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++++ +I F IAD+ +++ L EE + L + E F++I Sbjct: 112 IHSFCLDVVRKYYYLIDIDPVFRIADDTEAELLKEEVMEELLEEEYGKADNEP---FFDI 168 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ + + + ++I L + F S+ K +++ Sbjct: 169 VDRYTGDRSDAELQEMI-----LAIHEFSQSHPEPCKWLDQ 204 >gi|295401125|ref|ZP_06811099.1| recombination helicase AddA [Geobacillus thermoglucosidasius C56-YS93] gi|294976918|gb|EFG52522.1| recombination helicase AddA [Geobacillus thermoglucosidasius C56-YS93] Length = 1238 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 33/221 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + R V+A AGSGKT +LV+R+++ + A P LL +T T A+A Sbjct: 14 WTDEQWKAIVADGRDILVAAAAGSGKTAVLVERIIQKITAKEDPVDVDRLLVVTFTNASA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ E I + K+PN + + LL + T Sbjct: 74 SEMKTRIAE---------------AIERELDKQPNSLHLRRQLSLL-------NRASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++++ +I F IAD+ +++ L EE + L + E F++I Sbjct: 112 IHSFCLDVVRKYYYLIDIDPVFRIADDTEAELLKEEVMEELLEEEYGKADNEP---FFDI 168 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ + + + ++I L + F S+ K +++ Sbjct: 169 VDRYTGDRSDAELQEMI-----LAIHEFSQSHPEPCKWLDQ 204 >gi|270264259|ref|ZP_06192526.1| DNA helicase II [Serratia odorifera 4Rx13] gi|270041908|gb|EFA15005.1| DNA helicase II [Serratia odorifera 4Rx13] Length = 723 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 5 DVSDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 62 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 63 VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 84 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ ++AN+ F I D + +L++ K ++ +D + Sbjct: 85 QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQFRLLKRIVK----ALNIDEKQW 140 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 PPRQAMWYINGKKDEGLR 158 >gi|332159820|ref|YP_004296397.1| DNA-dependent helicase II [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607637|emb|CBY29135.1| ATP-dependent DNA helicase UvrD/PcrA [Yersinia enterocolitica subsp. palearctica Y11] gi|325664050|gb|ADZ40694.1| DNA-dependent helicase II [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862567|emb|CBX72721.1| DNA helicase II [Yersinia enterocolitica W22703] Length = 720 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + NA P +++ Sbjct: 2 DVSDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ ++AN+ F I D + +L++ K ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGKKDEGLR 155 >gi|259906888|ref|YP_002647244.1| DNA-dependent helicase II [Erwinia pyrifoliae Ep1/96] gi|224962510|emb|CAX53965.1| DNA helicase II [Erwinia pyrifoliae Ep1/96] Length = 720 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMGVENCSPHSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++I + Sbjct: 60 VTFTNKAAAEMRHRIEQLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PARQGMWYINGKKDEGLR 155 >gi|300714804|ref|YP_003739607.1| DNA helicase II [Erwinia billingiae Eb661] gi|299060640|emb|CAX57747.1| DNA helicase II [Erwinia billingiae Eb661] Length = 720 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D ++ + + + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSDLLDSLNDKQRDAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMAVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++I + Sbjct: 60 VTFTNKAAAEMRHRIEQLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+AN+ F I D E +L+ K + ++ LD+ + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDDKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PARQAMWYINGKKDEGLR 155 >gi|30250100|ref|NP_842170.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718] gi|30139207|emb|CAD86077.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718] Length = 1155 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 55/229 (24%), Positives = 110/229 (48%), Gaps = 13/229 (5%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 + E+ A DP S V A AGSGKT +L QR L LL P ++ +T T+ AA+EM Sbjct: 10 PDQRERQQALDPWHSFIVQAPAGSGKTGLLTQRFLVLLATVEEPEEIVAITFTRKAASEM 69 Query: 79 SHRVLEIITAWS------HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 HR+L+ + + S+ L + + Q ++ ++ + +L+ P L+ Sbjct: 70 KHRILQALRDTAGDINSDAESETALLNDAYQRQLRELANRVLAHDQARGWQLLQNPSRLR 129 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 +QTI + C ++ + P+ + + ++A++ +L EA + T+ ++ + E A Sbjct: 130 IQTIDSLCAWLVDRMPVCSRQGALSSVAEDAD--RLYLEAARLTVEAL--EEEGEWTAAI 185 Query: 193 YEILEISNDE--DIETLISDIISNRT-ALKLIFFFFSYLWRRKIIEKSL 238 ++ ++ ++ LI+D+++ R L+ + + R +E L Sbjct: 186 EHLIGHLDNRLDRLQQLIADMLARRDLWLRGVVDAANSDDMRDRLESVL 234 >gi|314936814|ref|ZP_07844161.1| ATP-dependent nuclease subunit A [Staphylococcus hominis subsp. hominis C80] gi|313655433|gb|EFS19178.1| ATP-dependent nuclease subunit A [Staphylococcus hominis subsp. hominis C80] Length = 1224 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 85/219 (38%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R+++ +L + LL +T T +A E Sbjct: 16 WTDAQWNSIYAKGQDILVAAAAGSGKTAVLVERIIQKILKDEVDVDKLLVVTFTNLSARE 75 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S + P + R + ++ T+H Sbjct: 76 MKHRVEQRIQQASL---------------EDPKNEHLKSQRIKIHQA-------QISTLH 113 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ + +F E ++ L+E++ L D + E ++ Sbjct: 114 SFCLKVIQQHYDVIQLDPNFRTISEVENVLLLEQSIDEVLEHHYEDPDIEFLTLVEQLSN 173 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ND+ ++ + +F + K ++ Sbjct: 174 DRNDDRFREILK---------RFYYFSIANPSPFKWLDS 203 >gi|238760176|ref|ZP_04621323.1| DNA helicase II [Yersinia aldovae ATCC 35236] gi|238701612|gb|EEP94182.1| DNA helicase II [Yersinia aldovae ATCC 35236] Length = 720 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + NA P +++ Sbjct: 2 DVSDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ ++AN+ F I D + +L++ K ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGKKDEGLR 155 >gi|225019255|ref|ZP_03708447.1| hypothetical protein CLOSTMETH_03208 [Clostridium methylpentosum DSM 5476] gi|224947886|gb|EEG29095.1| hypothetical protein CLOSTMETH_03208 [Clostridium methylpentosum DSM 5476] Length = 1188 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 49/213 (23%), Positives = 94/213 (44%), Gaps = 29/213 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAA 76 T ++ + + +SA+AGSGKT +L RV+ L LL +T T+AAA Sbjct: 21 TPEQRAAITSDGGTLLLSASAGSGKTFVLSSRVVYKLAHRERETRADRLLVVTFTRAAAK 80 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ +A++ ++ + P+ + + + + LL K+ TI Sbjct: 81 EMRTRI---------------TAKLDELVARFPDDAKLQRQKLLL-------SRAKITTI 118 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 +FC +++ ++ F IADE + ++ +EA L + D + K F + Sbjct: 119 DSFCADLVRDNFDRLGLSPDFRIADETELAQIQDEA----LDELFEDYYSQGDKEFAALS 174 Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLW 229 + + +D L ++S + ++ F +LW Sbjct: 175 DSFSLKDDSRLKGIVLSIYSRIRSNPFPLEWLW 207 >gi|291333833|gb|ADD93516.1| hypothetical protein [uncultured marine bacterium MedDCM-OCT-S04-C13] Length = 597 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 5/205 (2%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 + ++ A DP +S VSA AGSGKT ++ QRVLRLL P +LC+T T+ AAAEM Sbjct: 2 NDNAARIEALDPQQSFIVSAPAGSGKTGLITQRVLRLLRTVESPEQILCITFTRKAAAEM 61 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + R+ + + K Q + + ++ + +++ P L++QTI Sbjct: 62 ALRIHNALRDALINP---RPDDPYKAQIWDLAAAAIEHSKQMDWDLMDMPNRLRIQTIDG 118 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC I QF LE I +D S L A ++ L + D++ A Sbjct: 119 FCRYIASQFALETEIGVLPEPSDNIVS--LYRIAARNLLDKLEEDSDTGRYVAVLLAHMG 176 Query: 199 SNDEDIETLISDIISNRTALKLIFF 223 +N E E L+S+++SNR + F Sbjct: 177 NNIERCERLLSELLSNREQWLPLIF 201 >gi|228474316|ref|ZP_04059051.1| recombination helicase AddA [Staphylococcus hominis SK119] gi|228271675|gb|EEK13022.1| recombination helicase AddA [Staphylococcus hominis SK119] Length = 1221 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 85/219 (38%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R+++ +L + LL +T T +A E Sbjct: 13 WTDAQWNSIYAKGQDILVAAAAGSGKTAVLVERIIQKILKDEVDVDKLLVVTFTNLSARE 72 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S + P + R + ++ T+H Sbjct: 73 MKHRVEQRIQQASL---------------EDPKNEHLKSQRIKIHQA-------QISTLH 110 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ + +F E ++ L+E++ L D + E ++ Sbjct: 111 SFCLKVIQQHYDVIQLDPNFRTISEVENVLLLEQSIDEVLEHHYEDPDIEFLTLVEQLSN 170 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ND+ ++ + +F + K ++ Sbjct: 171 DRNDDRFREILK---------RFYYFSIANPSPFKWLDS 200 >gi|238789384|ref|ZP_04633170.1| DNA helicase II [Yersinia frederiksenii ATCC 33641] gi|238722527|gb|EEQ14181.1| DNA helicase II [Yersinia frederiksenii ATCC 33641] Length = 720 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + NA P +++ Sbjct: 2 DVSDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ ++AN+ F I D + +L++ K ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGKKDEGLR 155 >gi|168334042|ref|ZP_02692261.1| Recombination helicase AddA [Epulopiscium sp. 'N.t. morphotype B'] Length = 1186 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 32/229 (13%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA----NAHPSTLLCLTHTK 72 + T +QL ++ VSA AGSGKT +L +RV++ +L L +T T Sbjct: 1 MGFTTEQQLAIDLQDKNILVSAAAGSGKTAVLTERVIKRVLNTGKNRVDIDRFLIVTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA+EM R+ + + + + L L G Sbjct: 61 AAASEMKERIEIKLGDALSTAADGEEVD-------------------YLQKQLGLLGKAS 101 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TIH+FC +++ E + + E+++ L A L + EE AF Sbjct: 102 ISTIHSFCGKLIRTHFNELGLEPNMRTCTEQEATLLQNLAVTDILTAAF----EEESDAF 157 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 Y++ + + + +I L++ F S ++ +K + + + ++ Sbjct: 158 YQLCDAYGSVNGMDAXASMI-----LQIYKFTQSTVFPQKWLAQQVATL 201 >gi|325982040|ref|YP_004294442.1| UvrD/REP helicase [Nitrosomonas sp. AL212] gi|325531559|gb|ADZ26280.1| UvrD/REP helicase [Nitrosomonas sp. AL212] Length = 1158 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 98/204 (48%), Gaps = 9/204 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I ++ A DP++S V A AGSGKT +L+QR L+LL P ++ +T T+ AAA Sbjct: 6 IIPDADQRRQALDPSQSFIVQAPAGSGKTTLLIQRYLKLLTCVDTPEEVVAITFTRKAAA 65 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RVL + + + E ++ + + + + + E P L++QTI Sbjct: 66 EMRTRVLAELEIARIPGEAETAYE---KLNRELAVAVLLRDQQAGWYLSEHPERLRIQTI 122 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 + C ++ +Q P+ + + E + EA + TL ++ + + ++L Sbjct: 123 DSLCASLTRQMPMLSKFGAQPETT--EDATDFYLEAVRVTLE--LMQQDHAIAHDIEQLL 178 Query: 197 EISNDE--DIETLISDIISNRTAL 218 E +++ +ETL+ ++++ R Sbjct: 179 EHLDNDMARVETLLIEMLAQRDHW 202 >gi|239826206|ref|YP_002948830.1| recombination helicase AddA [Geobacillus sp. WCH70] gi|239806499|gb|ACS23564.1| recombination helicase AddA [Geobacillus sp. WCH70] Length = 1244 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 33/221 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + + V+A AGSGKT +LV+R+++ + A P LL +T T A+A Sbjct: 14 WTDEQWKAIVADGQDILVAAAAGSGKTAVLVERIIQKITAKEDPIDVDRLLVVTFTNASA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ E I + K+PN + + LL + T Sbjct: 74 AEMKTRIAE---------------AIERELDKQPNSLHLRRQLSLL-------NRASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++++ +I F IAD+ + + L EE + L + EL F+E+ Sbjct: 112 IHSFCLDVIRKYYYLIDIDPVFRIADDTEMELLKEEVMEELLEEEYGKADNEL---FFEV 168 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ + + + ++I L + F S+ + +++ Sbjct: 169 VDRYTGDRSDAELQEMI-----LAIYEFSRSHPETYRWLDQ 204 >gi|81428521|ref|YP_395521.1| ATP-dependent exonuclease, subunit A (N terminal fragment), authentic frameshift [Lactobacillus sakei subsp. sakei 23K] gi|123564300|sp|Q38X69|ADDA_LACSS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|78610163|emb|CAI55212.1| ATP-dependent exonuclease, subunit A (N terminal fragment), authentic frameshift [Lactobacillus sakei subsp. sakei 23K] Length = 890 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 91/222 (40%), Gaps = 28/222 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T S+Q VSA+AGSGKT +LV RV++ +L TLL +T T+AAA EM Sbjct: 9 FTPSQQAAVDHDGHDILVSASAGSGKTSVLVARVIQKILKGTDVDTLLVVTFTEAAATEM 68 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + S + E + L L ++ T+HA Sbjct: 69 RQRIQAALRDASEKATEPA-------------------VKQRLRQQLSLVPTAQISTLHA 109 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN----NEELKKAFYE 194 FC +++QF + F + + + L+ + + ++ E FYE Sbjct: 110 FCLKVIKQFYYVIDRDPVFRLLSDTAERLLLADQVWQRVREAFYNHEYVKENEQDTLFYE 169 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + +++ + ++DI+ +L+ F + K + K Sbjct: 170 LAQNFSNDRNDDGLTDIV-----FELLDFANANSNPVKWLNK 206 >gi|196248138|ref|ZP_03146840.1| recombination helicase AddA [Geobacillus sp. G11MC16] gi|196212922|gb|EDY07679.1| recombination helicase AddA [Geobacillus sp. G11MC16] Length = 1242 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 33/221 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKAAA 75 T + + R V+A AGSGKT +LV+R+++ + A LL +T T AAA Sbjct: 14 WTDEQWKAIAAGGRDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDRLLVVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ E + + +P+ + + LL + T Sbjct: 74 AEMKARIGEAL---------------ERELANRPHSLHLRRQLSLL-------NRASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++++ ++ F IADE + + L E+ + L + E F+ + Sbjct: 112 LHSFCLDVIRKYYYLLDLDPSFRIADETEIELLKEDVLEELLEEEYGKADNER---FFAV 168 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ + + + ++I L L F S+ + + Sbjct: 169 VDAYTGDRSDAELQEMI-----LALYEFSRSHPAPDEWLAD 204 >gi|238763616|ref|ZP_04624576.1| DNA helicase II [Yersinia kristensenii ATCC 33638] gi|238698094|gb|EEP90851.1| DNA helicase II [Yersinia kristensenii ATCC 33638] Length = 672 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + NA P +++ Sbjct: 2 DVSDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ ++AN+ F I D + +L++ K ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGKKDEGLR 155 >gi|320539382|ref|ZP_08039051.1| DNA-dependent ATPase I and helicase II [Serratia symbiotica str. Tucson] gi|320030507|gb|EFW12517.1| DNA-dependent ATPase I and helicase II [Serratia symbiotica str. Tucson] Length = 720 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ D +++ +SE + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSDLFDSLNEKQSEAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++ + Sbjct: 60 VTFTNKAAAEMRHRIEHVLGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ +EAN+ F I D + +L++ ++ +D + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHMEANLPQDFQILDSDDQLRLLKRIVN----ALNIDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGKKDEGLR 155 >gi|227357154|ref|ZP_03841523.1| excision endonuclease subunit UvrD [Proteus mirabilis ATCC 29906] gi|227162686|gb|EEI47653.1| excision endonuclease subunit UvrD [Proteus mirabilis ATCC 29906] Length = 718 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ++ ++ + E + A P + V A AGSGKT +LV R+ LL + A P +++ Sbjct: 2 DVSYLLEGLNDKQREAVAA--PRVNMLVLAGAGSGKTRVLVHRIAWLLSVEQASPFSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++I + Sbjct: 60 VTFTNKAAAEMRHRIEDLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H+ +++ L+A + F I D + +LI KS LD+ + Sbjct: 82 QGGMWIGTFHSLAHRLLRAHYLDAGLPQDFQIIDSDDQYRLIRRIVKSM----ALDDKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQGMWYINGKKDEGLR 155 >gi|197287153|ref|YP_002153025.1| DNA-dependent helicase II [Proteus mirabilis HI4320] gi|194684640|emb|CAR46555.1| DNA helicase II [Proteus mirabilis HI4320] Length = 718 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ++ ++ + E + A P + V A AGSGKT +LV R+ LL + A P +++ Sbjct: 2 DVSYLLEGLNDKQREAVAA--PRVNMLVLAGAGSGKTRVLVHRIAWLLSVEQASPFSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++I + Sbjct: 60 VTFTNKAAAEMRHRIEDLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H+ +++ L+A + F I D + +LI KS LD+ + Sbjct: 82 QGGMWIGTFHSLAHRLLRAHYLDAGLPQDFQIIDSDDQYRLIRRIVKSM----ALDDKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQGMWYINGKKDEGLR 155 >gi|138894263|ref|YP_001124716.1| ATP-dependent nuclease subunit A [Geobacillus thermodenitrificans NG80-2] gi|251764525|sp|A4IKW7|ADDA_GEOTN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|134265776|gb|ABO65971.1| ATP-dependent nuclease, subunit A [Geobacillus thermodenitrificans NG80-2] Length = 1242 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 33/221 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKAAA 75 T + + R V+A AGSGKT +LV+R+++ + A LL +T T AAA Sbjct: 14 WTDEQWKAIAAGGRDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDRLLVVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ E + + +P+ + + LL + T Sbjct: 74 AEMKARIGEAL---------------ERELANRPHSLHLRRQLSLL-------NRASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++++ ++ F IADE + + L E+ + L + E F+ + Sbjct: 112 LHSFCLDVIRKYYYLLDLDPSFRIADETEIELLKEDVLEELLEEEYGKADNER---FFAV 168 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ + + + ++I L L F S+ + + Sbjct: 169 VDAYTGDRSDAELQEMI-----LALYEFSRSHPAPDEWLAD 204 >gi|304398155|ref|ZP_07380030.1| DNA helicase II [Pantoea sp. aB] gi|304354441|gb|EFM18813.1| DNA helicase II [Pantoea sp. aB] Length = 720 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSELLDGLNDNQRAAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+A + F I D E +L+ K + S+ LD+ + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKSMNLDDKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PARQGMWYINGKKDEGLR 155 >gi|308188858|ref|YP_003932989.1| DNA helicase II [Pantoea vagans C9-1] gi|308059368|gb|ADO11540.1| DNA helicase II [Pantoea vagans C9-1] Length = 720 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSELLDGLNDNQRAAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+A + F I D E +L+ K + S+ LD+ + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKSMNLDDKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PARQGMWYINGKKDEGLR 155 >gi|291458763|ref|ZP_06598153.1| ATP-dependent nuclease subunit A [Oribacterium sp. oral taxon 078 str. F0262] gi|291418680|gb|EFE92399.1| ATP-dependent nuclease subunit A [Oribacterium sp. oral taxon 078 str. F0262] Length = 1234 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 80/222 (36%), Gaps = 34/222 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T+ ++ + S + V+A AGSGKT +LV+ V+ LL P S LL +T T++AA Sbjct: 5 WTEEQERVISHRGGNLLVAAAAGSGKTAVLVEHVISLLTEREDPTSLSELLIMTFTESAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + E LI + T Sbjct: 65 AEMKERIRLSLEERLRKDPENGR----------------------LIREAGNLQNANIST 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++ + ++ F + +E + + L + L + + Sbjct: 103 IDSFCRRLILENYASIDLDPSFRVGEEGELRLLRSDLVTELLEEHYESCDPGYFRFLENF 162 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 +D IE LI LK+ + + W + + Sbjct: 163 TRGKDDAGIEELI---------LKVYEYSEATPWPEDYLRDA 195 >gi|253690332|ref|YP_003019522.1| DNA helicase II [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756910|gb|ACT14986.1| DNA helicase II [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 720 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D ++ + + + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSDLLDGLNDKQRDAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIDHLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIRALNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWFINGKKDEGLR 155 >gi|293607025|ref|ZP_06689369.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292814622|gb|EFF73759.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 1149 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 10/206 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + Q + + A DPTRS V A AGSGKT +L R+L LL P ++ +T T+ AA+ Sbjct: 7 LPQDHAARTDALDPTRSFLVQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAAS 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RVL + E + + + ++ +++ +L+ P L ++TI Sbjct: 67 EMHARVLSKLRRGLDAPPEAMHER----RSWELARAALARNDEQGWHLLDHPARLAIRTI 122 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 +FC +++ P + + I D ++ E A ++TL + D+ + ++ + Sbjct: 123 DSFCAGLVRSMPWLSELGGMPEITD--DARAHYEAAARATLD--LADDYDAVRILLQHL- 177 Query: 197 EISNDEDIETLISDIISNRTALKLIF 222 + + + I+D++ R + Sbjct: 178 -DVDVQAAKDAIADMLGQRDQWLPLL 202 >gi|317046397|ref|YP_004114045.1| DNA helicase II [Pantoea sp. At-9b] gi|316948014|gb|ADU67489.1| DNA helicase II [Pantoea sp. At-9b] Length = 720 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ ++ ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSDLLNGLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++I + Sbjct: 60 VTFTNKAAAEMRHRIDQLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+A + F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PARQGMWYINGKKDEGLR 155 >gi|50123099|ref|YP_052266.1| DNA-dependent helicase II [Pectobacterium atrosepticum SCRI1043] gi|49613625|emb|CAG77076.1| DNA helicase II [Pectobacterium atrosepticum SCRI1043] Length = 720 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D ++ + + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSDLLDGLNDKQRAAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRINHLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ ++AN+ F I D + +L+ K + ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLL----KRLIRALNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWFINGKKDEGLR 155 >gi|283470166|emb|CAQ49377.1| recombination helicase AddA [Staphylococcus aureus subsp. aureus ST398] Length = 1217 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R+++ +L + LL +T T +A E Sbjct: 12 WTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDCIDVDRLLVVTFTNLSARE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S P + + R + ++ T+H Sbjct: 72 MKHRVDQRIQEASIAD---------------PANAHLKNQRIKIHQA-------QISTLH 109 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ NI +F + E ++ L+E+ + + + L AF E+ E Sbjct: 110 SFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQ----HYDILDPAFIELTE 165 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + II +L FF + +++ Sbjct: 166 QLSSDRSDDQFRMIIK-----QLYFFSVANPDPTNWLDQ 199 >gi|73541802|ref|YP_296322.1| DNA helicase/exodeoxyribonuclease V, subunit A [Ralstonia eutropha JMP134] gi|72119215|gb|AAZ61478.1| DNA helicase/exodeoxyribonuclease V, subunit A [Ralstonia eutropha JMP134] Length = 1197 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 53/195 (27%), Positives = 95/195 (48%), Gaps = 3/195 (1%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 A DP S V A AGSGKT +LV R++RLLLA A P +L +T T+ AA EM R+LE Sbjct: 20 RAACDPASSVVVEACAGSGKTWLLVARLVRLLLAGAAPHEILAITFTRKAAEEMRERLLE 79 Query: 85 IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 ++ + SDE + + + + + +AR L +L PG + + T H + + Sbjct: 80 VLAQLARDSDEAVVEALVMRGMTAQAAHESLPRARRLHAQVLAAPGRMAIDTFHGWFGTL 139 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ PL + + ++ E + ++ EA ++ EL++A+ +++ + Sbjct: 140 LRGAPLASGVVPGASL--REDALRMKREAWAPVWRALATPKYAELRQAYEALVDAVGEFQ 197 Query: 204 IETLISDIISNRTAL 218 L+ + R+ Sbjct: 198 ARGLLDAMFHARSEW 212 >gi|227114721|ref|ZP_03828377.1| DNA-dependent helicase II [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 720 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D ++ + + + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSDLLDGLNDKQRDAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIDHLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIRALNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWFINGKKDEGLR 155 >gi|294497408|ref|YP_003561108.1| ATP-dependent nuclease subunit A [Bacillus megaterium QM B1551] gi|294347345|gb|ADE67674.1| ATP-dependent nuclease, subunit A [Bacillus megaterium QM B1551] Length = 1245 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 35/221 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + + V+A AGSGKT +LV+R+++ + P LL T T A+A Sbjct: 14 WTDDQWNAIVSSGQDILVAAAAGSGKTAVLVERIIKKITMGDEPIDVDRLLVATFTNASA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM +R+ E + K K P+ + + +LL + T Sbjct: 74 AEMRNRIGEAL---------------EKELKKNPSSLHLRRQLNLL-------NRASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194 +H+FC +++ + ++ F IAD+ ++ L EE + ++ NE Sbjct: 112 LHSFCLEVIRTYYYLIDVDPGFRIADDTEADLLREEVLEELFEEQYSIEQNERFFDLIDR 171 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 ND DI+ ++ KL F S +E Sbjct: 172 YTSDRNDLDIQLMVR---------KLYDFARSNPDPNGWLE 203 >gi|254785006|ref|YP_003072434.1| UvrD/REP DNA helicase II [Teredinibacter turnerae T7901] gi|237686397|gb|ACR13661.1| UvrD/REP DNA helicase II [Teredinibacter turnerae T7901] Length = 1138 Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 10/209 (4%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +I +E+ A +P +S A AGSGKT +L QR L LL P +L +T T+ A Sbjct: 1 MIIADSTERRTALEPDQSFICEAPAGSGKTELLTQRYLVLLARVRRPEEILAITFTRKAT 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RVL + HL E + + ++ ++ + +L+ P L+++T Sbjct: 61 GEMRERVLHAL----HLGRGPEPEEAHRQLTWQLARAVLAADQQHQWQLLDNPNRLQIKT 116 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 + C ++ +Q P+E++ S I D S +L A + L ++ + + A + Sbjct: 117 FDSLCSSLTRQLPMESSFGSQPQITD--DSAELYRSAVHALLGTL--EEDSAWAVALGVV 172 Query: 196 LEISNDE--DIETLISDIISNRTALKLIF 222 L+ ++ E L+ +++ R + Sbjct: 173 LDFLDNRFDRFEALMGQLLAKREQWLPLL 201 >gi|73663117|ref|YP_301898.1| putative ATP-dependent nuclease subunit A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642147|sp|Q49WA6|ADDA_STAS1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|72495632|dbj|BAE18953.1| putative ATP-dependent nuclease subunit A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 1219 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 85/218 (38%), Gaps = 32/218 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R++ R++ LL +T T A+A E Sbjct: 14 WTDNQWKSIYAKGQDILVAAAAGSGKTAVLVERIIQRIIRDEIDVDKLLVVTFTNASARE 73 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV + I S + P+ + + R + ++ T+H Sbjct: 74 MKQRVDQRIQEASI---------------ENPDNAHLKNQRVKIHQA-------QISTLH 111 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++QQ +I +F + E ++ L+E+ L + ++ Sbjct: 112 SFCLKLIQQHYDVLDIDPNFRTSSEAENILLLEQTIDEVLERHYDILDPHFIDLTEQLSS 171 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 ND+ + I ++ +F + ++ Sbjct: 172 DRNDDQLRNTIKEM---------YYFSVANPNPLNWLQ 200 >gi|317121624|ref|YP_004101627.1| recombination helicase AddA [Thermaerobacter marianensis DSM 12885] gi|315591604|gb|ADU50900.1| recombination helicase AddA [Thermaerobacter marianensis DSM 12885] Length = 1504 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 84/221 (38%), Gaps = 34/221 (15%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74 + T ++ + S VSA AG+GKT +LV+R+++ LL A P LL +T T+AA Sbjct: 24 AWTGEQRQAIALRGTSLLVSAAAGAGKTTVLVERIVQRLLDPADPLDVDRLLVVTFTEAA 83 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A +M R+ E + ++PN + + LL G + Sbjct: 84 ATQMKDRIRERL---------------ELAIAQRPNDMHLRRQLALL-------GRASIS 121 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+H+FC I++Q+ + +A E +S+ L E + Sbjct: 122 TVHSFCLRIVRQYFYRLGLDPAAKVAGEHESQLLRYEVLDELFERRYAAAAGDFLALVEA 181 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 NDE + L+ L + S ++ Sbjct: 182 YGGRRNDESLRQLV---------LSVYESAISRPRPGAWLD 213 >gi|307132967|ref|YP_003884983.1| ATP-dependent DNA helicase UvrD/PcrA [Dickeya dadantii 3937] gi|306530496|gb|ADN00427.1| ATP-dependent DNA helicase UvrD/PcrA [Dickeya dadantii 3937] Length = 720 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D ++ + + + A+ + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSDLLDSLNDKQRDAVAAT--RSNMLVLAGAGSGKTRVLVHRIAWLLTVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIDQLLGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+A + F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKALNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGKKDEGLR 155 >gi|295702782|ref|YP_003595857.1| ATP-dependent nuclease subunit A [Bacillus megaterium DSM 319] gi|294800441|gb|ADF37507.1| ATP-dependent nuclease, subunit A [Bacillus megaterium DSM 319] Length = 1245 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 35/221 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + + V+A AGSGKT +LV+R+++ + P LL T T A+A Sbjct: 14 WTDDQWNAIVSSGQDILVAAAAGSGKTAVLVERIIKKITMGDEPIDVDRLLVATFTNASA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM +R+ E + K K P+ + + +LL + T Sbjct: 74 AEMRNRIGEAL---------------EKELKKNPSSLHLRRQLNLL-------NRASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194 +H+FC +++ + ++ F IAD+ ++ L EE + ++ NE Sbjct: 112 LHSFCLEVIRTYYYLIDVDPGFRIADDTEADLLREEVLEELFEEEYSIEQNERFFDLIDR 171 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 ND DI+ ++ KL F S +E Sbjct: 172 YTSDRNDLDIQLMVR---------KLYDFARSNPDPNGWLE 203 >gi|253991590|ref|YP_003042946.1| DNA-dependent helicase II [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638468|emb|CAR67090.1| dna helicase ii (ec 3.6.1.-) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783040|emb|CAQ86205.1| DNA helicase II [Photorhabdus asymbiotica] Length = 723 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 82/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ++ ++ + E + A P + V A AGSGKT +LV R+ LL + NA P +++ Sbjct: 5 DVSYLLESLNDKQREAVAA--PRTNMLVLAGAGSGKTRVLVHRIAWLLSVENASPFSIMA 62 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 63 VTFTNKAAAEMRHRIENLIGT--------------------------------------S 84 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+AN+ F I D E +L+ K + ++ LD+ + Sbjct: 85 QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQHRLL----KRIIKAMNLDDKQW 140 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 PARQAMWYINGKKDEGLR 158 >gi|331002448|ref|ZP_08325966.1| recombination helicase AddA [Lachnospiraceae oral taxon 107 str. F0167] gi|330410264|gb|EGG89698.1| recombination helicase AddA [Lachnospiraceae oral taxon 107 str. F0167] Length = 1148 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 90/221 (40%), Gaps = 30/221 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T+++Q S VSA AGSGKT +LV+R+++ + + +P +LL +T T+AAA Sbjct: 2 WTEAQQAAIDIKKGSILVSAAAGSGKTAVLVERIIKKITDSKNPIDVDSLLVMTFTRAAA 61 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 A M ++ + E+ K + + + LL + K+ T Sbjct: 62 ASMKEKIYNALL-----------KEMEKYENNTKEFKRLKEQSILLSSA-------KIMT 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +FC +I+++ + +I F +ADE + L +A + L S N + Sbjct: 104 TDSFCLSIIKENIDKIDIDQAFNVADESEISLLRADAMEELLESEYEAANGDFMDLTDAF 163 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 D I + +L F S W + ++ Sbjct: 164 ANTKGDRSISEFVE---------RLYRFAISKPWPIEWLDS 195 >gi|313123657|ref|YP_004033916.1| ATP-dependent helicase/nuclease subunit a [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280220|gb|ADQ60939.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 1227 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 91/222 (40%), Gaps = 26/222 (11%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + T + + VSA+AGSGKT +LV+RV+R ++ + + LL +T T+AAA Sbjct: 3 VKYTPDQARAIESRGQDILVSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAA 62 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ + + + A+ L L + T Sbjct: 63 SEMKQRIKQRLQDRLQEETDASQADF-------------------LRRQLAEIDTAIIST 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIMLDNNEELKKAFYE 194 I +FC ++++F +I F+I + +L++E A + + + N+ K F Sbjct: 104 IDSFCLDVIRRFYFAIDIDPDFSILTDATQIELLKERALRDVENDYLQNENQAKKDRFLA 163 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + D++ L L F + R ++K Sbjct: 164 LYDAFAGDSDANSARDLL-----LDLYQFAMARPNYRAWLQK 200 >gi|323943785|gb|EGB39880.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Escherichia coli H120] Length = 228 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|70726984|ref|YP_253898.1| hypothetical protein SH1983 [Staphylococcus haemolyticus JCSC1435] gi|123659798|sp|Q4L4Y3|ADDA_STAHJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|68447708|dbj|BAE05292.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 1225 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 84/219 (38%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R++ +++ LL +T T +A E Sbjct: 13 WTDAQWKSIYANGQDVLVAAAAGSGKTAVLVERIIQKIIRDEIDVDKLLVVTFTNLSARE 72 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HRV + I S + P + R + ++ T+H Sbjct: 73 MKHRVDQRIQQASI---------------EDPRNEHLKNQRIKIHQA-------QISTLH 110 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC I+QQ ++ +F + ++ L+E++ L + E ++ Sbjct: 111 SFCLKIIQQHYDVIDLDPNFRTISDVENVLLLEQSIDEVLEKHYDTPDIEFLTLVEQLSS 170 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ND++ L+ + F + + ++ Sbjct: 171 DRNDDNFRDLLK---------RFYNFSIANPSPFEWLDS 200 >gi|312170748|emb|CBX79010.1| DNA helicase II [Erwinia amylovora ATCC BAA-2158] Length = 723 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 45/220 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 5 DVSDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMEVENCSPHSIMA 62 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++I Sbjct: 63 VTFTNKAAAEMRHRIEQLIGTRQ------------------------------------- 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+A + F I D E +L+ K + ++ LD + Sbjct: 86 -GGMWIGTFHGLAHRLLRAHHLDARLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 140 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 + + DE + + + N + + +Y Sbjct: 141 PARQGMWYINGKKDEGLRPMHIESYGNPIEQTWLRIYQAY 180 >gi|311281508|ref|YP_003943739.1| DNA helicase II [Enterobacter cloacae SCF1] gi|308750703|gb|ADO50455.1| DNA helicase II [Enterobacter cloacae SCF1] Length = 732 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 82/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N+ P +++ Sbjct: 14 DVSYLLDSLNDKQREAVAA--PRTNMLVLAGAGSGKTRVLVHRIAWLLSVENSSPYSIMA 71 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 72 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 93 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ L+AN+ F I D E +L+ K + ++ LD + Sbjct: 94 QGGMWVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 149 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 150 PPRQAMWYINSQKDEGLR 167 >gi|33592640|ref|NP_880284.1| putative nuclease/helicase [Bordetella pertussis Tohama I] gi|33572286|emb|CAE41838.1| putative nuclease/helicase [Bordetella pertussis Tohama I] Length = 1134 Score = 155 bits (392), Expect = 5e-36, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 101/220 (45%), Gaps = 11/220 (5%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 + + A DP+RS V A AGSGKT +L R+L LL P ++ +T T+ AA+EM R Sbjct: 12 AARRQALDPSRSFLVQAPAGSGKTELLTDRILALLATVTRPEEIVAITFTRKAASEMHAR 71 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 VL ++ L + + + ++ +++ + +L+ P L ++TI +FC Sbjct: 72 VLHKLS----LGAGEPPRSAHERRSWELARAALARDQEQGWHLLDHPARLAIRTIDSFCA 127 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 +++ P + + IAD ++ E A ++TL + D ++ ++ + + Sbjct: 128 GLVRGMPWLSELGGMPDIAD--DARAHYEAAARATLE--LADEHDAVRALLAHL--DVDV 181 Query: 202 EDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLWS 240 + + I+ ++ R L+ F + ++L Sbjct: 182 QAAKDAIAAMLGQRDQWMPLLQFGLDRDGLEASLAEALEH 221 >gi|329297035|ref|ZP_08254371.1| DNA-dependent helicase II [Plautia stali symbiont] Length = 720 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ ++ ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSDLLNGLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++I + Sbjct: 60 VTFTNKAAAEMRHRIDQLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+A + F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PARQGMWYINGKKDEGLR 155 >gi|328951963|ref|YP_004369297.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109] gi|328452287|gb|AEB08116.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109] Length = 1137 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 92/202 (45%), Gaps = 7/202 (3%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 + ++ LA +P+ S V A AGSGKT +L++R L LL P +L LT T+ AA E+ Sbjct: 8 DQRDRELAVNPSYSVHVEAPAGSGKTTVLLKRYLTLLARVEEPEEVLALTFTRKAAGELR 67 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + + + ++ ++ + +A L++ T H+F Sbjct: 68 ARIQQQLQGGTEQPSDVAPSQHAVELRELAQTVSHQQADKKNGYF----ERLQISTFHSF 123 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML--DNNEELKKAFYEILE 197 C +++ P AN+ F + ++ ++ L +EA + + ++ + ++ Sbjct: 124 CAQLLRLAPHNANLPPDFQLIEDREADWLKKEAIELMRRRLATLPASDPVRQTLVRRLVR 183 Query: 198 ISNDE-DIETLISDIISNRTAL 218 ++ND + + +++S R L Sbjct: 184 LNNDWPRLAAELRELLSRREVL 205 >gi|300721452|ref|YP_003710727.1| DNA-dependent ATPase I and helicase II [Xenorhabdus nematophila ATCC 19061] gi|297627944|emb|CBJ88490.1| DNA-dependent ATPase I and helicase II [Xenorhabdus nematophila ATCC 19061] Length = 721 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ++ ++ + E + A P + V A AGSGKT +LV R+ LL + NA P +++ Sbjct: 2 DISYLLESLNDKQREAVAA--PRTNMLVLAGAGSGKTRVLVHRIAWLLSVENASPFSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIENLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H+ +++ L+AN+ F I D E +LI K + ++ LD+ + Sbjct: 82 QGGMWIGTFHSLAHRLLRAHHLDANLPQDFQILDSEDQHRLI----KRIIKAMNLDDKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PARQGMWYINGKKDEGLR 155 >gi|261823387|ref|YP_003261493.1| DNA-dependent helicase II [Pectobacterium wasabiae WPP163] gi|261607400|gb|ACX89886.1| DNA helicase II [Pectobacterium wasabiae WPP163] Length = 720 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D ++ + + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSDLLDGLNDKQRAAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRINHLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ ++AN+ F I D + +L+ K + ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLL----KRLIRALNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWFINGKKDEGLR 155 >gi|303229716|ref|ZP_07316502.1| ATP-dependent nuclease subunit A [Veillonella atypica ACS-134-V-Col7a] gi|302515613|gb|EFL57569.1| ATP-dependent nuclease subunit A [Veillonella atypica ACS-134-V-Col7a] Length = 1273 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 37/232 (15%) Query: 16 LISQTKSEQLLASDPTRS------AWVSANAGSGKTHILVQRVLRLLLANAHP---STLL 66 + T ++ P S V+A AGSGKT +LV+R++ L +P L+ Sbjct: 2 GVKWTPEQESAIMSPKDSNLGAQTLLVAAAAGSGKTAVLVERIITRLKDMENPLSVQELM 61 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T TKAAAAEMS R+ + +D+ K ++ + + +LL + Sbjct: 62 VVTFTKAAAAEMSARIGVALAKAMESTDD------------KSLQARLERQLNLLPSA-- 107 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + T+H+FC+ +++ + + +I I +E + L +E L +++ + E Sbjct: 108 -----HISTLHSFCQWVIRSYFYKLDIPPTARIGNEAEMALLKQE----VLENLLKEAYE 158 Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 + +++ + +D+ + + D L L F S + ++ Sbjct: 159 HNEYGIFDLSDFFSDDKSDAGLQD-----KVLSLYEFAMSQSNPDGWMRHAV 205 >gi|227507848|ref|ZP_03937897.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192686|gb|EEI72753.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 1254 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 30/224 (13%) Query: 17 ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 + T +Q D P + VSA+AGSGKT +LV R++ ++ + LL +T T AA Sbjct: 1 MQYTPDQQRAIKDRPDGNVLVSASAGSGKTRVLVDRIIDMVKNQGINIDQLLVVTFTNAA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ + + + +K+ +++ L+T + + Sbjct: 61 AKEMRERLRGSLQS-------------------EFSKATDPESKKHLLTQIRKVAVADIT 101 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+ A+C+ ++ ++ I +F + + +L++E + + +E+ F + Sbjct: 102 TMDAYCQKLVSRYYYILGIDPNFRVLSDNTEIQLLKEQVWDNVREALYGQDED--HTFAD 159 Query: 195 ILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 + E SND E L + I ++ F K + + Sbjct: 160 LTENFSNDRSDEGLTNVI------FQMDEFANVNEDPDKWLNDA 197 >gi|227523105|ref|ZP_03953154.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus hilgardii ATCC 8290] gi|227089709|gb|EEI25021.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus hilgardii ATCC 8290] Length = 1254 Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 30/224 (13%) Query: 17 ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 + T +Q D P + VSA+AGSGKT +LV R++ ++ + LL +T T AA Sbjct: 1 MQYTPDQQRAIKDRPDGNVLVSASAGSGKTRVLVDRIIDMVKNQGINIDQLLVVTFTNAA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ + + + +K+ +++ L+T + + Sbjct: 61 AKEMRERLRGSLQS-------------------EFSKATDPESKKHLLTQIRKVAVADIT 101 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+ A+C+ ++ ++ I +F + + +L++E + + +E+ F + Sbjct: 102 TMDAYCQKLVSRYYYILGIDPNFRVLSDNTEIQLLKEQVWDNVREALYGQDED--HTFAD 159 Query: 195 ILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 + E SND E L + I ++ F K + + Sbjct: 160 LTENFSNDRSDEGLTNVI------FQMDEFANVNEDPDKWLNDA 197 >gi|292486682|ref|YP_003529552.1| DNA helicase II [Erwinia amylovora CFBP1430] gi|291552099|emb|CBA19136.1| DNA helicase II [Erwinia amylovora CFBP1430] Length = 723 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 45/220 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 5 DVSDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMEVENCSPHSIMA 62 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++I Sbjct: 63 VTFTNKAAAEMRHRIEQLIGTRQ------------------------------------- 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+A + F I D E +L+ K + ++ LD + Sbjct: 86 -GGMWIGTFHGLAHRLLRAHHLDARLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 140 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 + + DE + + + N + + +Y Sbjct: 141 PARQGMWYINGKKDEGLRPMHIESYGNPIEQTWLRIYQAY 180 >gi|22124304|ref|NP_667727.1| DNA-dependent helicase II [Yersinia pestis KIM 10] gi|45442958|ref|NP_994497.1| DNA-dependent helicase II [Yersinia pestis biovar Microtus str. 91001] gi|21957076|gb|AAM83978.1|AE013639_7 DNA-dependent ATPase I and helicase II [Yersinia pestis KIM 10] gi|45437825|gb|AAS63374.1| DNA helicase II [Yersinia pestis biovar Microtus str. 91001] Length = 722 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D +++ + + + A P + V A AGSGKT +LV R+ LL + NA P +++ Sbjct: 4 DVSDLLDSLNEKQRDAVAA--PRGNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIS 61 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 62 VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+AN+ F I D + +L++ K ++ LD + Sbjct: 84 QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 139 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 140 PPRQAMWYINGKKDEGLR 157 >gi|251787838|ref|YP_003002559.1| DNA-dependent helicase II [Dickeya zeae Ech1591] gi|247536459|gb|ACT05080.1| DNA helicase II [Dickeya zeae Ech1591] Length = 720 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D ++ + + + A+ + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSDLLDSLNDKQRDAVAAA--RSNMLVLAGAGSGKTRVLVHRIAWLLTVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIDQLLGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+A + F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKALNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGKKDEGLR 155 >gi|162418460|ref|YP_001605138.1| DNA-dependent helicase II [Yersinia pestis Angola] gi|162351275|gb|ABX85223.1| DNA helicase II [Yersinia pestis Angola] Length = 720 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D +++ + + + A P + V A AGSGKT +LV R+ LL + NA P +++ Sbjct: 2 DVSDLLDSLNEKQRDAVAA--PRGNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIS 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+AN+ F I D + +L++ K ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGKKDEGLR 155 >gi|170026218|ref|YP_001722723.1| DNA-dependent helicase II [Yersinia pseudotuberculosis YPIII] gi|169752752|gb|ACA70270.1| DNA helicase II [Yersinia pseudotuberculosis YPIII] Length = 720 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D +++ + + + A P + V A AGSGKT +LV R+ LL + NA P +++ Sbjct: 2 DVSDLLDSLNEKQRDAVAA--PRGNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIS 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+AN+ F I D + +L++ K ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGKKDEGLR 155 >gi|78043588|ref|YP_360999.1| exonuclease RexA [Carboxydothermus hydrogenoformans Z-2901] gi|123575608|sp|Q3AA35|ADDA_CARHZ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|77995703|gb|ABB14602.1| exonuclease RexA [Carboxydothermus hydrogenoformans Z-2901] Length = 1167 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 96/226 (42%), Gaps = 34/226 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 + + T + + + VSA AG+GKT +LV+RVL +L + P LL +T T+ Sbjct: 1 MKNWTAEQMRAITSRGNALLVSAAAGAGKTSVLVERVLSRVLTDTPPVDIDRLLVVTFTE 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA EM R L E+ K + P S + + LL Sbjct: 61 AAAGEMKER---------------LGTELLKRLNEDPGNSRILEQLELLPVA-------D 98 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T+H+FC I++++ + FAI + + L K L I+ + E+ + Sbjct: 99 ISTLHSFCHKIIRKYGRVCGYETKFAILEGPRETYL----KNKVLEEILEERYEKGDREL 154 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 + +LE NDE + + ++I L L F S K + SL Sbjct: 155 FALLEYLNDEKNDRNLKELI-----LNLYHFSRSNPEPEKWLLDSL 195 >gi|227325792|ref|ZP_03829816.1| DNA-dependent helicase II [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 720 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D ++ + + + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSDLLDGLNDKQRDAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIDHLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ ++AN+ F I D + +L+ K + ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLL----KRLIRALNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWFINGKKDEGLR 155 >gi|51594549|ref|YP_068740.1| DNA-dependent helicase II [Yersinia pseudotuberculosis IP 32953] gi|108806179|ref|YP_650095.1| DNA-dependent helicase II [Yersinia pestis Antiqua] gi|108810289|ref|YP_646056.1| DNA-dependent helicase II [Yersinia pestis Nepal516] gi|145600708|ref|YP_001164784.1| DNA-dependent helicase II [Yersinia pestis Pestoides F] gi|153947747|ref|YP_001399206.1| DNA-dependent helicase II [Yersinia pseudotuberculosis IP 31758] gi|153997103|ref|ZP_02022236.1| DNA helicase II [Yersinia pestis CA88-4125] gi|165926252|ref|ZP_02222084.1| DNA helicase II [Yersinia pestis biovar Orientalis str. F1991016] gi|165939149|ref|ZP_02227700.1| DNA helicase II [Yersinia pestis biovar Orientalis str. IP275] gi|166011668|ref|ZP_02232566.1| DNA helicase II [Yersinia pestis biovar Antiqua str. E1979001] gi|166213517|ref|ZP_02239552.1| DNA helicase II [Yersinia pestis biovar Antiqua str. B42003004] gi|167401880|ref|ZP_02307368.1| DNA helicase II [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420892|ref|ZP_02312645.1| DNA helicase II [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426213|ref|ZP_02317966.1| DNA helicase II [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468817|ref|ZP_02333521.1| DNA helicase II [Yersinia pestis FV-1] gi|186893549|ref|YP_001870661.1| DNA-dependent helicase II [Yersinia pseudotuberculosis PB1/+] gi|218930844|ref|YP_002348719.1| DNA-dependent helicase II [Yersinia pestis CO92] gi|229837171|ref|ZP_04457336.1| DNA helicase II [Yersinia pestis Pestoides A] gi|229839531|ref|ZP_04459690.1| DNA helicase II [Yersinia pestis biovar Orientalis str. PEXU2] gi|229900094|ref|ZP_04515231.1| DNA helicase II [Yersinia pestis biovar Orientalis str. India 195] gi|229900460|ref|ZP_04515589.1| DNA helicase II [Yersinia pestis Nepal516] gi|270488814|ref|ZP_06205888.1| DNA helicase II [Yersinia pestis KIM D27] gi|294505505|ref|YP_003569567.1| DNA helicase II [Yersinia pestis Z176003] gi|51587831|emb|CAH19434.1| DNA helicase II [Yersinia pseudotuberculosis IP 32953] gi|108773937|gb|ABG16456.1| ATP-dependent DNA helicase UvrD [Yersinia pestis Nepal516] gi|108778092|gb|ABG12150.1| ATP-dependent DNA helicase UvrD [Yersinia pestis Antiqua] gi|115349455|emb|CAL22428.1| DNA helicase II [Yersinia pestis CO92] gi|145212404|gb|ABP41811.1| ATP-dependent DNA helicase UvrD [Yersinia pestis Pestoides F] gi|149289409|gb|EDM39487.1| DNA helicase II [Yersinia pestis CA88-4125] gi|152959242|gb|ABS46703.1| DNA helicase II [Yersinia pseudotuberculosis IP 31758] gi|165912922|gb|EDR31548.1| DNA helicase II [Yersinia pestis biovar Orientalis str. IP275] gi|165921776|gb|EDR38973.1| DNA helicase II [Yersinia pestis biovar Orientalis str. F1991016] gi|165989437|gb|EDR41738.1| DNA helicase II [Yersinia pestis biovar Antiqua str. E1979001] gi|166205190|gb|EDR49670.1| DNA helicase II [Yersinia pestis biovar Antiqua str. B42003004] gi|166961021|gb|EDR57042.1| DNA helicase II [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048773|gb|EDR60181.1| DNA helicase II [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054732|gb|EDR64536.1| DNA helicase II [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186696575|gb|ACC87204.1| DNA helicase II [Yersinia pseudotuberculosis PB1/+] gi|229682479|gb|EEO78566.1| DNA helicase II [Yersinia pestis Nepal516] gi|229686874|gb|EEO78953.1| DNA helicase II [Yersinia pestis biovar Orientalis str. India 195] gi|229695897|gb|EEO85944.1| DNA helicase II [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706114|gb|EEO92123.1| DNA helicase II [Yersinia pestis Pestoides A] gi|262363571|gb|ACY60292.1| DNA helicase II [Yersinia pestis D106004] gi|262367499|gb|ACY64056.1| DNA helicase II [Yersinia pestis D182038] gi|270337318|gb|EFA48095.1| DNA helicase II [Yersinia pestis KIM D27] gi|294355964|gb|ADE66305.1| DNA helicase II [Yersinia pestis Z176003] gi|320013561|gb|ADV97132.1| DNA helicase II [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 720 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D +++ + + + A P + V A AGSGKT +LV R+ LL + NA P +++ Sbjct: 2 DVSDLLDSLNEKQRDAVAA--PRGNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIS 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+AN+ F I D + +L++ K ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGKKDEGLR 155 >gi|119773559|ref|YP_926299.1| DNA-dependent helicase II [Shewanella amazonensis SB2B] gi|119766059|gb|ABL98629.1| ATP-dependent DNA helicase UvrD [Shewanella amazonensis SB2B] Length = 721 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 82/220 (37%), Gaps = 45/220 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P S V A AGSGKT +L R+ LL + N P ++L Sbjct: 2 DVSFLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLLQVENQSPYSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV +I+ Sbjct: 60 VTFTNKAAAEMRERVEKIVG--------------------------------------HN 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + + T H +++ +A + F I D + ++L+ K L S+ LD + Sbjct: 82 TGRMWIGTFHGLAHRLLRTHWQDAGLPQSFQIMDSDDQQRLL----KRILKSMNLDEKQY 137 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 + + D+ + D KL+ + Y Sbjct: 138 PPRLVAGYINGKKDQGLRPAHIDAGPFPMEQKLLELYRIY 177 >gi|269137484|ref|YP_003294184.1| DNA-dependent helicase II [Edwardsiella tarda EIB202] gi|267983144|gb|ACY82973.1| DNA-dependent helicase II [Edwardsiella tarda EIB202] gi|304557557|gb|ADM40221.1| ATP-dependent DNA helicase UvrD/PcrA [Edwardsiella tarda FL6-60] Length = 719 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLAVENCSPFSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIEALIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+A + F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D+ + Sbjct: 138 PARQGMWYINGKKDDGLR 155 >gi|238784730|ref|ZP_04628733.1| DNA helicase II [Yersinia bercovieri ATCC 43970] gi|238714326|gb|EEQ06335.1| DNA helicase II [Yersinia bercovieri ATCC 43970] Length = 720 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + NA P +++ Sbjct: 2 DVSDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIS 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ ++AN+ F I D + +L++ K ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGKKDEGLR 155 >gi|238918094|ref|YP_002931608.1| DNA-dependent helicase II [Edwardsiella ictaluri 93-146] gi|238867662|gb|ACR67373.1| DNA helicase II, putative [Edwardsiella ictaluri 93-146] Length = 719 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLAVENCSPFSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIEALIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+A + F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D+ + Sbjct: 138 PARQGMWYINGKKDDGLR 155 >gi|292897919|ref|YP_003537288.1| DNA helicase II [Erwinia amylovora ATCC 49946] gi|291197767|emb|CBJ44862.1| DNA helicase II [Erwinia amylovora ATCC 49946] Length = 720 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 45/220 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSDLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMEVENCSPHSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++I Sbjct: 60 VTFTNKAAAEMRHRIEQLIGTRQ------------------------------------- 82 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+A + F I D E +L+ K + ++ LD + Sbjct: 83 -GGMWIGTFHGLAHRLLRAHHLDARLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 + + DE + + + N + + +Y Sbjct: 138 PARQGMWYINGKKDEGLRPMHIESYGNPIEQTWLRIYQAY 177 >gi|227510906|ref|ZP_03940955.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus buchneri ATCC 11577] gi|227085858|gb|EEI21170.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus buchneri ATCC 11577] Length = 1254 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 30/224 (13%) Query: 17 ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 + T +Q D P + VSA+AGSGKT +LV R++ ++ + LL +T T AA Sbjct: 1 MQYTPDQQRAIKDRPDGNVLVSASAGSGKTRVLVDRIIDMVKNQGINIDQLLVVTFTNAA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ + + + +K+ +++ L+T + + Sbjct: 61 AKEMRERLRGSLQS-------------------EFSKATDPESKKHLLTQIRKVAVADIT 101 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+ A+C+ ++ ++ I +F + + +L++E + + +E+ F + Sbjct: 102 TMDAYCQKLVSRYYYILGIDPNFRVLSDNTEIQLLKEQVWDNVREALYGQDED--HTFAD 159 Query: 195 ILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 + E SND E L + I ++ F K + + Sbjct: 160 LTENFSNDRSDEGLTNVI------FQMDEFANVNEDPDKWLNDA 197 >gi|33600423|ref|NP_887983.1| putative nuclease/helicase [Bordetella bronchiseptica RB50] gi|33568022|emb|CAE31935.1| putative nuclease/helicase [Bordetella bronchiseptica RB50] Length = 1134 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 101/217 (46%), Gaps = 13/217 (5%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 + + A DP+RS V A AGSGKT +L R+L LL P ++ +T T+ AA+EM R Sbjct: 12 AARRQALDPSRSFLVQAPAGSGKTELLTDRILALLATVTRPEEIVAITFTRKAASEMHAR 71 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 VL ++ L + + + ++ +++ + +L+ P L ++TI +FC Sbjct: 72 VLHKLS----LGAGEPPRSAHERRSWELARAALARDQEQGWHLLDHPARLAIRTIDSFCA 127 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 +++ P + + IAD ++ E A ++TL + D ++ ++ + + Sbjct: 128 GLVRGMPWLSELGGMPDIAD--DARAHYEAAARATLE--LADEHDAVRALLAHL--DVDV 181 Query: 202 EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 + + I+ ++ R + F R +E SL Sbjct: 182 QAAKEAIAAMLGQRDQWMPLLQFGLD---RDGLEASL 215 >gi|323464966|gb|ADX77119.1| exonuclease RexA [Staphylococcus pseudintermedius ED99] Length = 1214 Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 32/219 (14%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAA 75 + T ++ + V+A AGSGKT +LV+R++ R+L LL +T T +A Sbjct: 9 VQWTDAQWESIYAKGQDVLVAAAAGSGKTAVLVERIIQRILRDGIDVDRLLVVTFTNLSA 68 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM HRV A I + + P+ + R + ++ T Sbjct: 69 REMKHRV---------------EARIQQAAIEDPSNQHLKNQRTKIHQA-------QIST 106 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC ++QQ +I +F A E ++ L+EE + + L F + Sbjct: 107 LHSFCLRLIQQHYDVLDIDPNFRTASEVENVLLLEEVIDDVFEK----HYDRLDPTFVTL 162 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 E + + + + ++ N L F + + Sbjct: 163 TEHISTDRDDAALRLMVKN-----LYDFSIANPDPIGWL 196 >gi|33595892|ref|NP_883535.1| putative nuclease/helicase [Bordetella parapertussis 12822] gi|33565971|emb|CAE36522.1| putative nuclease/helicase [Bordetella parapertussis] Length = 1134 Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 101/217 (46%), Gaps = 13/217 (5%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 + + A DP+RS V A AGSGKT +L R+L LL P ++ +T T+ AA+EM R Sbjct: 12 AARRQALDPSRSFLVQAPAGSGKTELLTDRILALLATVTRPEEIVAITFTRKAASEMHAR 71 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 VL ++ L + + + ++ +++ + +L+ P L ++TI +FC Sbjct: 72 VLHKLS----LGAGEPPRSAHERRSWELARAALARDQEQGWHLLDHPARLAIRTIDSFCA 127 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 +++ P + + IAD ++ E A ++TL + D ++ ++ + + Sbjct: 128 GLVRGMPWLSELGGMPDIAD--DARAHYEAAARATLE--LADEHDAVRALLAHL--DVDV 181 Query: 202 EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 + + I+ ++ R + F R +E SL Sbjct: 182 QAAKEAIAAMLGQRDQWMPLLQFGLD---RDGLEASL 215 >gi|304436811|ref|ZP_07396777.1| ATP-dependent nuclease subunit A [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370183|gb|EFM23842.1| ATP-dependent nuclease subunit A [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 1264 Score = 154 bits (390), Expect = 8e-36, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 84/226 (37%), Gaps = 24/226 (10%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 D ++ T +Q + V+A AGSGKT +LV+R++ + +L LT TKA Sbjct: 3 DRLTFTADQQRAIDARGHNILVAAAAGSGKTRVLVERIISQVRNEELSLDRILVLTFTKA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + A I G + + R LL + Sbjct: 63 AALEMRERIEAALNAEI--------DAIAGDAGISKEIDRLERQRILLTDA-------DI 107 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+FC+ ++Q +I F +A E++ + L + L + + F Sbjct: 108 STFHSFCQRLLQAHIDATDIPPTFRLASEQEIRLLKRDVMDELLERKYEEAVQGGSDEFL 167 Query: 194 EILEISND--EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 + D E L ++++ L F S + + Sbjct: 168 AFADAYGGVKGDDEKLKEEVLA------LYDFALSQPSPAVWLSRQ 207 >gi|319891943|ref|YP_004148818.1| ATP-dependent nuclease, subunit A [Staphylococcus pseudintermedius HKU10-03] gi|317161639|gb|ADV05182.1| ATP-dependent nuclease, subunit A [Staphylococcus pseudintermedius HKU10-03] Length = 1214 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 32/219 (14%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAA 75 + T ++ + V+A AGSGKT +LV+R++ R+L LL +T T +A Sbjct: 9 VQWTDAQWESIYAKGQDVLVAAAAGSGKTAVLVERIIQRILRDGIDVDRLLVVTFTNLSA 68 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM HRV A I + + P+ + R + ++ T Sbjct: 69 REMKHRV---------------EARIQQAAIEDPSNQHLKNQRTKIHQA-------QIST 106 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC ++QQ +I +F A E ++ L+EE + + L F + Sbjct: 107 LHSFCLRLIQQHYDVLDIDPNFRTASEVENVLLLEEVIDDVFEK----HYDRLDPTFVTL 162 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 E + + + + ++ N L F + + Sbjct: 163 TEHISTDRDDAALRLMVKN-----LYDFSIANPDPIGWL 196 >gi|291085881|ref|ZP_06354319.2| DNA helicase II [Citrobacter youngae ATCC 29220] gi|291069706|gb|EFE07815.1| DNA helicase II [Citrobacter youngae ATCC 29220] Length = 738 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 20 DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLTVENNSPYSIMA 77 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I+ + Sbjct: 78 VTFTNKAAAEMRHRIGQIMGT--------------------------------------S 99 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 100 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 155 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 156 PPRQAMWFINSQKDEGLR 173 >gi|238798592|ref|ZP_04642068.1| DNA helicase II [Yersinia mollaretii ATCC 43969] gi|238717548|gb|EEQ09388.1| DNA helicase II [Yersinia mollaretii ATCC 43969] Length = 721 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + NA P +++ Sbjct: 2 DVSDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIS 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ ++AN+ F I D + +L++ K ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGKKDEGLR 155 >gi|311108181|ref|YP_003981034.1| UvrD/Rep helicase family protein 2 [Achromobacter xylosoxidans A8] gi|310762870|gb|ADP18319.1| UvrD/Rep helicase family protein 2 [Achromobacter xylosoxidans A8] Length = 1147 Score = 154 bits (390), Expect = 9e-36, Method: Composition-based stats. Identities = 49/201 (24%), Positives = 93/201 (46%), Gaps = 10/201 (4%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 + + A DPTRS V A AGSGKT +L R+L LL P ++ +T T+ AA+EM R Sbjct: 12 AARADALDPTRSFLVQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAASEMHAR 71 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 VL + E + + + ++ +++ +L+ P L ++TI +FC Sbjct: 72 VLSKLRRGLDAPPEAMHER----RSWELARAALARNEAQGWHLLDHPARLAIRTIDSFCA 127 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 +++ P + + I D ++ E A ++TL + D+ E ++ + + Sbjct: 128 GLVRSMPWLSELGGMPEITD--DARAHYEAAARATLD--LADDYEAVRILLKHL--DVDV 181 Query: 202 EDIETLISDIISNRTALKLIF 222 + + I+D++ R + Sbjct: 182 QAAKEAIADMLGQRDQWLPLL 202 >gi|238750684|ref|ZP_04612183.1| DNA helicase II [Yersinia rohdei ATCC 43380] gi|238711074|gb|EEQ03293.1| DNA helicase II [Yersinia rohdei ATCC 43380] Length = 720 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D +++ + E + A P + V A AGSGKT +LV R+ LL + NA P +++ Sbjct: 2 DVSDLLDSLNEKQREAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLLSVENASPYSIIS 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ ++AN+ F I D + +L++ K ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSDDQLRLLKRLVK----ALNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSKKDEGLR 155 >gi|225630221|ref|YP_002727012.1| helicase, UvrD/Rep family [Wolbachia sp. wRi] gi|225592202|gb|ACN95221.1| helicase, UvrD/Rep family [Wolbachia sp. wRi] Length = 1099 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 38/215 (17%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A +P S WV+A+AG+GKT IL+ RVLRLLL N +LCLT T AAA EM +R+ I+ Sbjct: 5 AINPNFSVWVNASAGTGKTKILIDRVLRLLLENK--RNILCLTFTNAAANEMENRIHSIL 62 Query: 87 TAWSHLSDEILSAEITKIQ-------------------------GKKPNKSDMSKARHLL 121 + W+ SD +L+A++ ++ G + NK +++AR L Sbjct: 63 SKWAICSDSVLAADLEQLDFFPMSSQCVTLGSQHPYLSSQCVTLGSRKNKDYLTRARRLF 122 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 + GL +QTIHAFC ++ FP+EA I + + + K+L L Sbjct: 123 SELENL--GLTIQTIHAFCYKLISSFPIEAGIAPNCTL---SECKELHSIIFNKVL---- 173 Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDIISNRT 216 +NE ++ I ++ + L+ + R+ Sbjct: 174 --HNETVQDDINLIATEIDENKLRDLLYTLCIKRS 206 >gi|293393896|ref|ZP_06638203.1| excision endonuclease subunit UvrD [Serratia odorifera DSM 4582] gi|291423723|gb|EFE96945.1| excision endonuclease subunit UvrD [Serratia odorifera DSM 4582] Length = 723 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 82/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ ++ ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 5 DVSDLLNSMNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 62 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++I + Sbjct: 63 VTFTNKAAAEMRHRIEQLIGT--------------------------------------S 84 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ ++AN+ F I D E +L++ + ++ +D + Sbjct: 85 QGGMWIGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRIVR----ALNIDEKQW 140 Query: 188 LKKAFYEILEISNDEDIE 205 + + D+ + Sbjct: 141 PPRQAMWYINGKKDDGLR 158 >gi|237727929|ref|ZP_04558410.1| DNA helicase II [Citrobacter sp. 30_2] gi|226910378|gb|EEH96296.1| DNA helicase II [Citrobacter sp. 30_2] Length = 738 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 20 DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLTVENNSPYSIMA 77 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I+ + Sbjct: 78 VTFTNKAAAEMRHRIGQIMGT--------------------------------------S 99 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 100 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 155 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 156 PPRQAMWFINSQKDEGLR 173 >gi|298530047|ref|ZP_07017449.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1] gi|298509421|gb|EFI33325.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1] Length = 1142 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 112/225 (49%), Gaps = 10/225 (4%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 + +++ A DP RS V A AGSGKT +L QR L LL P ++ +T T+ AA EM Sbjct: 6 EDAAQRSQALDPKRSFIVQAPAGSGKTELLTQRTLALLCTVQAPEEVVAITFTRKAAGEM 65 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+L+ ++ + E T + + ++R L + +PG L++QTI + Sbjct: 66 RTRILQALSRAADGETPGAPHEKTTL---DLAARVLERSRSLGWELESSPGRLRIQTIDS 122 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE--ELKKAFYEIL 196 C ++ + PL +++ I D ++ +A +STLA + + + +++ +L Sbjct: 123 LCSGLVSRMPLLSSLGGQGRINDNP--GEMYLQAARSTLAQLHNSSPDAGHWRESIRVLL 180 Query: 197 EISNDEDIET--LISDIISNRTA-LKLIFFFFSYLWRRKIIEKSL 238 +++ +T LI+ ++ R L+ + + +R+ +E++L Sbjct: 181 RHLDNDHDKTCRLIAGMLPQREKWLRHLADPGNSRLQRQYLEQAL 225 >gi|16767221|ref|NP_462836.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167993889|ref|ZP_02574982.1| DNA helicase II [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197263905|ref|ZP_03163979.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|17865684|sp|Q05311|UVRD_SALTY RecName: Full=DNA helicase II gi|6960251|gb|AAF33441.1| 98% identity with E. coli DNA helicase (UVRD) (SP:P03018); contains similarity to Pfam family PF00580 (UvrD/REP helicase), score=812.9, E=1.2e-240, N=1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422515|gb|AAL22795.1| DNA-dependent ATPase I and helicase II [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197242160|gb|EDY24780.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205328129|gb|EDZ14893.1| DNA helicase II [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261249074|emb|CBG26935.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996230|gb|ACY91115.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160466|emb|CBW19996.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915069|dbj|BAJ39043.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225469|gb|EFX50526.1| ATP-dependent DNA helicase UvrD/PcrA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132298|gb|ADX19728.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 720 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|197247460|ref|YP_002148876.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211163|gb|ACH48560.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 720 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|330827780|ref|YP_004390732.1| DNA helicase II [Aeromonas veronii B565] gi|328802916|gb|AEB48115.1| DNA helicase II [Aeromonas veronii B565] Length = 723 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 88/231 (38%), Gaps = 48/231 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + + + A P + V A AGSGKT +LV R+ L+ + P +++ Sbjct: 2 DVSTLLDGLNDKQRDAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMQVERCSPFSIIA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV ++I Sbjct: 60 VTFTNKAAAEMRGRVEKVIGDGVR------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ + T H +++ L+A + F I D + +LI + L ++ LD Sbjct: 84 --GMWIGTFHGIAHRLLRAHHLDAGLPQDFQILDSDDQYRLI----RRVLKALNLDEKHW 137 Query: 188 LKKAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235 +A + DE + D+ + RT ++ + R +++ Sbjct: 138 APRAVMGYINGKKDEGLRPGDIDLYGDPVTRTYQQIYETYQETCDRSGLVD 188 >gi|161505541|ref|YP_001572653.1| DNA-dependent helicase II [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866888|gb|ABX23511.1| hypothetical protein SARI_03706 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 720 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|16762183|ref|NP_457800.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143672|ref|NP_807014.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161539|ref|ZP_03347249.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425413|ref|ZP_03358163.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213649574|ref|ZP_03379627.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865062|ref|ZP_03387181.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25290775|pir||AG0918 DNA helicase II [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504486|emb|CAD07941.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Typhi] gi|29139307|gb|AAO70874.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 720 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|205354488|ref|YP_002228289.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274269|emb|CAR39288.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 720 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|167553866|ref|ZP_02347610.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321791|gb|EDZ09630.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 720 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|326629622|gb|EGE35965.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 720 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|319763161|ref|YP_004127098.1| uvrd/rep helicase [Alicycliphilus denitrificans BC] gi|317117722|gb|ADV00211.1| UvrD/REP helicase [Alicycliphilus denitrificans BC] Length = 1095 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 53/201 (26%), Positives = 97/201 (48%), Gaps = 9/201 (4%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 +A DP RS V A AG+GKT +LV R+LR LL + P +L +T TK AA EM R+ E Sbjct: 20 AIACDPARSVAVEACAGAGKTWMLVSRMLRALLDGSAPHEILAITFTKKAAGEMRQRLQE 79 Query: 85 IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + ++H + E L E+ + G + + + R+L +L + L+++T H++ A+ Sbjct: 80 WLEQFAHAAPEDLEKELIARGIGTEAARGKREQLRNLYQQLLASGRPLQIRTFHSWFAAL 139 Query: 144 MQQFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 + PL + +H+ + +++ K E + L ++ D + L+ + I+ + Sbjct: 140 LSTAPLALLQERGLPTHYELLEDDAQAK--AEVWRPFLEAVAGD--DALRADYEAIVAVH 195 Query: 200 NDEDIETLISDIISNRTALKL 220 + + R L Sbjct: 196 GRSQTHKALEAALDKRVEFLL 216 >gi|56415805|ref|YP_152880.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182420|ref|YP_218837.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161617070|ref|YP_001591035.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168233884|ref|ZP_02658942.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238404|ref|ZP_02663462.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244640|ref|ZP_02669572.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263159|ref|ZP_02685132.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168822679|ref|ZP_02834679.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444550|ref|YP_002043181.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451500|ref|YP_002047963.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470536|ref|ZP_03076520.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734777|ref|YP_002116880.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197364735|ref|YP_002144372.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245946|ref|YP_002217880.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388338|ref|ZP_03214950.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930325|ref|ZP_03221302.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207859153|ref|YP_002245804.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224585766|ref|YP_002639565.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912954|ref|ZP_04656791.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|56130062|gb|AAV79568.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130053|gb|AAX67756.1| DNA-dependent ATPase I and helicase II [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161366434|gb|ABX70202.1| hypothetical protein SPAB_04903 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403213|gb|ACF63435.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409804|gb|ACF70023.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456900|gb|EDX45739.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710279|gb|ACF89500.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197096212|emb|CAR61809.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197288763|gb|EDY28138.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940462|gb|ACH77795.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605436|gb|EDZ03981.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320729|gb|EDZ05931.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205332069|gb|EDZ18833.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336527|gb|EDZ23291.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340965|gb|EDZ27729.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348080|gb|EDZ34711.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710956|emb|CAR35324.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470294|gb|ACN48124.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320088361|emb|CBY98121.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322613028|gb|EFY09979.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617384|gb|EFY14284.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625624|gb|EFY22446.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627047|gb|EFY23840.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631237|gb|EFY28000.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638270|gb|EFY34969.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642794|gb|EFY39381.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322650351|gb|EFY46764.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656358|gb|EFY52652.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657583|gb|EFY53853.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665994|gb|EFY62175.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666733|gb|EFY62910.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671024|gb|EFY67154.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679269|gb|EFY75321.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681673|gb|EFY77700.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686000|gb|EFY81988.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716913|gb|EFZ08484.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323192626|gb|EFZ77854.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196492|gb|EFZ81642.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203756|gb|EFZ88777.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205369|gb|EFZ90343.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210738|gb|EFZ95614.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215906|gb|EGA00639.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221399|gb|EGA05817.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323231768|gb|EGA15879.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236183|gb|EGA20260.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239580|gb|EGA23628.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244324|gb|EGA28332.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249579|gb|EGA33491.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250329|gb|EGA34215.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256536|gb|EGA40267.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259766|gb|EGA43399.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265174|gb|EGA48672.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268397|gb|EGA51869.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625668|gb|EGE32013.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 720 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|238926789|ref|ZP_04658549.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas flueggei ATCC 43531] gi|238885321|gb|EEQ48959.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas flueggei ATCC 43531] Length = 1260 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 24/224 (10%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 D ++ T +Q + V+A AGSGKT +LV+R++ + +L LT TKA Sbjct: 3 DRLTFTADQQRAIDARGHNILVAAAAGSGKTRVLVERIISQVRNEELSLDRILVLTFTKA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + A I G + + R LL G + Sbjct: 63 AALEMRERIEAALNA--------EIDAIAGDAGISKEIDRLERQRILLT-------GADI 107 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+FC+ ++Q +I F +A E++ + L + L + ++E AF Sbjct: 108 STFHSFCQRLLQAHIDATDIPPTFRLASEQEIRLLKRDVMDELLERKYEEASDEFL-AFA 166 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 + +D E L ++++ L F S + + Sbjct: 167 DAYGGVKGDD-EKLKEEVLA------LYDFALSQPSPAVWLSRQ 203 >gi|298383180|ref|ZP_06992774.1| DNA helicase II [Escherichia coli FVEC1302] gi|298276416|gb|EFI17935.1| DNA helicase II [Escherichia coli FVEC1302] Length = 722 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 4 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 61 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 62 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 84 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 139 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 140 PPRQAMWYINSQKDEGLR 157 >gi|168467634|ref|ZP_02701471.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195629989|gb|EDX48649.1| DNA helicase II [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 720 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|330825224|ref|YP_004388527.1| UvrD/REP helicase [Alicycliphilus denitrificans K601] gi|329310596|gb|AEB85011.1| UvrD/REP helicase [Alicycliphilus denitrificans K601] Length = 1095 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 53/201 (26%), Positives = 97/201 (48%), Gaps = 9/201 (4%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 +A DP RS V A AG+GKT +LV R+LR LL + P +L +T TK AA EM R+ E Sbjct: 20 AIACDPARSVAVEACAGAGKTWMLVSRMLRALLDGSAPHEILAITFTKKAAGEMRQRLQE 79 Query: 85 IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + ++H + E L E+ + G + + + R+L +L + L+++T H++ A+ Sbjct: 80 WLEQFAHAAPEDLEKELIARGIGLEAARGKREQLRNLYQQLLASGRPLQIRTFHSWFAAL 139 Query: 144 MQQFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 + PL + +H+ + +++ K E + L ++ D + L+ + I+ + Sbjct: 140 LSTAPLALLQERGLPTHYELLEDDAQAK--AEVWRPFLEAVAGD--DALRADYEAIVAVH 195 Query: 200 NDEDIETLISDIISNRTALKL 220 + + R L Sbjct: 196 GRSQTHKALEAALDKRVEFLL 216 >gi|43297|emb|CAA25321.1| pot. DNA helicase II [Escherichia coli] Length = 720 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|283787510|ref|YP_003367375.1| DNA helicase II [Citrobacter rodentium ICC168] gi|282950964|emb|CBG90641.1| DNA helicase II [Citrobacter rodentium ICC168] Length = 720 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLTVENNSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD+ + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLMKAMNLDDKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGQKDEGLR 155 >gi|331655498|ref|ZP_08356491.1| DNA helicase II [Escherichia coli M718] gi|331046819|gb|EGI18903.1| DNA helicase II [Escherichia coli M718] Length = 722 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 4 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 61 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 62 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 84 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 139 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 140 PPRQAMWYINSQKDEGLR 157 >gi|117619159|ref|YP_854747.1| DNA helicase II [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560566|gb|ABK37514.1| DNA helicase II [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 723 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 88/231 (38%), Gaps = 48/231 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + + + A P + V A AGSGKT +LV R+ L+ + P +++ Sbjct: 2 DVSTLLDGLNDKQRDAVAA--PRCNLLVLAGAGSGKTRVLVHRIAWLMQVERCSPFSIIA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV ++I Sbjct: 60 VTFTNKAAAEMRGRVEKVIGDGVR------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ + T H +++ L+A + F I D + +LI + L ++ LD Sbjct: 84 --GMWIGTFHGIAHRLLRAHHLDAGLPQDFQILDSDDQYRLI----RRVLKALNLDEKHW 137 Query: 188 LKKAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235 +A + DE + D+ + RT ++ + R +++ Sbjct: 138 APRAVMGYINGKKDEGLRPGDIDLYGDPVTRTYQQIYKTYQETCDRSGLVD 188 >gi|145301020|ref|YP_001143861.1| DNA helicase II [Aeromonas salmonicida subsp. salmonicida A449] gi|142853792|gb|ABO92113.1| DNA helicase II [Aeromonas salmonicida subsp. salmonicida A449] Length = 723 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 89/231 (38%), Gaps = 48/231 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + + + A P + V A AGSGKT +LV R+ L+ + P +++ Sbjct: 2 DVSTLLDGLNDKQRDAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMQVERCSPFSIIA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV +++ + Sbjct: 60 VTFTNKAAAEMRGRVEKVLGSMQR------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ + T H +++ L+A + F I D + +LI + + ++ LD Sbjct: 84 --GMWIGTFHGIAHRLLRAHHLDAGLPQDFQILDSDDQYRLI----RRVIKALNLDEKHW 137 Query: 188 LKKAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235 +A + DE + D+ + RT ++ + R +++ Sbjct: 138 APRAVMSYINGKKDEGLRPGDIDLYGDPVTRTYQQIYKTYQETCDRSGLVD 188 >gi|322646964|gb|EFY43466.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|323227583|gb|EGA11739.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 720 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|293407440|ref|ZP_06651360.1| DNA helicase II [Escherichia coli FVEC1412] gi|291425551|gb|EFE98589.1| DNA helicase II [Escherichia coli FVEC1412] Length = 722 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 4 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 61 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 62 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 84 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 139 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 140 PPRQAMWYINSQKDEGLR 157 >gi|260596037|ref|YP_003208608.1| DNA-dependent helicase II [Cronobacter turicensis z3032] gi|260215214|emb|CBA27073.1| DNA helicase II [Cronobacter turicensis z3032] Length = 736 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 81/200 (40%), Gaps = 45/200 (22%) Query: 7 FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTL 65 + S +D ++ + E + A P + V A AGSGKT +LV R+ L ++ N P ++ Sbjct: 16 LMDVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLMMVENCSPYSI 73 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 + +T T AAAEM HR+ +++ Sbjct: 74 MAVTFTNKAAAEMRHRIGQLMGT------------------------------------- 96 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 + GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD Sbjct: 97 -SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEK 151 Query: 186 EELKKAFYEILEISNDEDIE 205 + + + D+ + Sbjct: 152 QWPPRQAMWYINGKKDDGLR 171 >gi|254039025|ref|ZP_04873076.1| DNA helicase II [Escherichia sp. 1_1_43] gi|226838716|gb|EEH70744.1| DNA helicase II [Escherichia sp. 1_1_43] Length = 738 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 20 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 77 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 78 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 99 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 100 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 155 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 156 PPRQAMWYINSQKDEGLR 173 >gi|56419217|ref|YP_146535.1| ATP-dependent deoxyribonuclease subunit A [Geobacillus kaustophilus HTA426] gi|81558057|sp|Q5L263|ADDA_GEOKA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|56379059|dbj|BAD74967.1| ATP-dependent deoxyribonuclease subunit A [Geobacillus kaustophilus HTA426] Length = 1242 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 93/219 (42%), Gaps = 33/219 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKAAA 75 T + + R V+A AGSGKT +LV+R+++ + A LL +T T AAA Sbjct: 14 WTDEQWKAIAAGGRDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDRLLVVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ E + + K+P+ + + LL + T Sbjct: 74 AEMKARIGEAL---------------ERELAKRPHSLHLRRQLSLLPRA-------AIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++++ ++ F IADE + + L E+ + L + E F+ + Sbjct: 112 LHSFCLDVIRKYYYLLDLDPSFRIADETEIELLKEDVLEELLEEEYGKPDNER---FFAV 168 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 ++ + + + ++I + L F S+ + + Sbjct: 169 VDAYTGDRSDAELQEMI-----VALYEFSRSHPEPDEWL 202 >gi|331644546|ref|ZP_08345666.1| DNA helicase II [Escherichia coli H736] gi|331679923|ref|ZP_08380586.1| DNA helicase II [Escherichia coli H591] gi|331036218|gb|EGI08453.1| DNA helicase II [Escherichia coli H736] gi|331072470|gb|EGI43802.1| DNA helicase II [Escherichia coli H591] gi|332105031|gb|EGJ08377.1| DNA helicase II [Shigella sp. D9] Length = 722 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 4 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 61 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 62 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 84 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 139 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 140 PPRQAMWYINSQKDEGLR 157 >gi|237702822|ref|ZP_04533303.1| DNA helicase II [Escherichia sp. 3_2_53FAA] gi|26110983|gb|AAN83167.1|AE016769_282 DNA helicase II [Escherichia coli CFT073] gi|91074912|gb|ABE09793.1| DNA helicase II [Escherichia coli UTI89] gi|226902993|gb|EEH89252.1| DNA helicase II [Escherichia sp. 3_2_53FAA] Length = 738 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 20 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 77 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 78 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 99 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 100 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 155 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 156 PPRQAMWYINSQKDEGLR 173 >gi|331649638|ref|ZP_08350720.1| DNA helicase II [Escherichia coli M605] gi|331675280|ref|ZP_08376031.1| DNA helicase II [Escherichia coli TA280] gi|331041508|gb|EGI13656.1| DNA helicase II [Escherichia coli M605] gi|331067566|gb|EGI38970.1| DNA helicase II [Escherichia coli TA280] Length = 722 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 4 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 61 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 62 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 84 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 139 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 140 PPRQAMWYINSQKDEGLR 157 >gi|309807505|ref|ZP_07701464.1| UvrD/REP helicase [Lactobacillus iners LactinV 01V1-a] gi|308169255|gb|EFO71314.1| UvrD/REP helicase [Lactobacillus iners LactinV 01V1-a] Length = 491 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 35/216 (16%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA+EM R+ I Sbjct: 1 MVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAASEMKLRIKNAIKNKIKEQP 60 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + L L L + TI +FC ++++F N+ Sbjct: 61 DNL----------------------FLKQQLAKVDIANISTIDSFCLEVIRKFYYVINLD 98 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS- 213 +F+I ++ L++E +N ++ FY + D ++E S ++ Sbjct: 99 PNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN--NFAGDREVEAARSMLLEL 156 Query: 214 --------NRTAL--KLIFFFFSYLWRRKIIEKSLW 239 N A +L FF+ + + II +LW Sbjct: 157 YYVTLAQPNYEAFLKRLDFFYQIDINKNDIISSNLW 192 >gi|156935862|ref|YP_001439778.1| DNA-dependent helicase II [Cronobacter sakazakii ATCC BAA-894] gi|156534116|gb|ABU78942.1| hypothetical protein ESA_03745 [Cronobacter sakazakii ATCC BAA-894] Length = 720 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L ++ N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLMMVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D+ + Sbjct: 138 PPRQAMWYINGKKDDGLR 155 >gi|157158058|ref|YP_001465297.1| DNA-dependent helicase II [Escherichia coli E24377A] gi|157080088|gb|ABV19796.1| DNA helicase II [Escherichia coli E24377A] Length = 720 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|290513159|ref|ZP_06552521.1| DNA helicase II [Klebsiella sp. 1_1_55] gi|289774370|gb|EFD82376.1| DNA helicase II [Klebsiella sp. 1_1_55] Length = 722 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + AS + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 4 DVSYLLDSLNDKQREAVAAS--RTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 61 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ T Sbjct: 62 VTFTNKAAAEMRHRIGQLMGT--------------------------------------T 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ L+AN+ F I D E +L+ K + ++ LD + Sbjct: 84 QGGMWVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 139 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 140 PPRQAMWYINSQKDEGLR 157 >gi|325499218|gb|EGC97077.1| DNA helicase II [Escherichia fergusonii ECD227] Length = 738 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 20 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 77 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 78 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 99 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 100 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 155 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 156 PPRQAMWYINSQKDEGLR 173 >gi|331685533|ref|ZP_08386117.1| DNA helicase II [Escherichia coli H299] gi|331077234|gb|EGI48448.1| DNA helicase II [Escherichia coli H299] Length = 720 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|293417279|ref|ZP_06659904.1| DNA helicase II [Escherichia coli B185] gi|291431047|gb|EFF04042.1| DNA helicase II [Escherichia coli B185] Length = 720 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|82779008|ref|YP_405357.1| DNA-dependent helicase II [Shigella dysenteriae Sd197] gi|309784529|ref|ZP_07679167.1| DNA helicase II [Shigella dysenteriae 1617] gi|81243156|gb|ABB63866.1| DNA-dependent ATPase I and helicase II [Shigella dysenteriae Sd197] gi|308927635|gb|EFP73104.1| DNA helicase II [Shigella dysenteriae 1617] Length = 720 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|157163290|ref|YP_001460608.1| DNA-dependent helicase II [Escherichia coli HS] gi|170022164|ref|YP_001727118.1| DNA-dependent helicase II [Escherichia coli ATCC 8739] gi|188494883|ref|ZP_03002153.1| DNA helicase II [Escherichia coli 53638] gi|193067953|ref|ZP_03048918.1| DNA helicase II [Escherichia coli E110019] gi|218556376|ref|YP_002389290.1| DNA-dependent helicase II [Escherichia coli IAI1] gi|260857781|ref|YP_003231672.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli O26:H11 str. 11368] gi|260870538|ref|YP_003236940.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli O111:H- str. 11128] gi|157068970|gb|ABV08225.1| DNA helicase II [Escherichia coli HS] gi|169757092|gb|ACA79791.1| DNA helicase II [Escherichia coli ATCC 8739] gi|188490082|gb|EDU65185.1| DNA helicase II [Escherichia coli 53638] gi|192958573|gb|EDV89011.1| DNA helicase II [Escherichia coli E110019] gi|218363145|emb|CAR00786.1| DNA-dependent ATPase I and helicase II [Escherichia coli IAI1] gi|257756430|dbj|BAI27932.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli O26:H11 str. 11368] gi|257766894|dbj|BAI38389.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli O111:H- str. 11128] gi|323155219|gb|EFZ41403.1| DNA helicase II [Escherichia coli EPECa14] gi|323173428|gb|EFZ59057.1| DNA helicase II [Escherichia coli LT-68] gi|323177826|gb|EFZ63410.1| DNA helicase II [Escherichia coli 1180] Length = 720 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|302874683|ref|YP_003843316.1| recombination helicase AddA [Clostridium cellulovorans 743B] gi|307690704|ref|ZP_07633150.1| recombination helicase AddA [Clostridium cellulovorans 743B] gi|302577540|gb|ADL51552.1| recombination helicase AddA [Clostridium cellulovorans 743B] Length = 1287 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 32/226 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKAAA 75 T+ ++ + V+A AGSGKT +LV+R++ L+ LL +T TKAAA Sbjct: 9 WTEEQKAAIDTHGVNLLVAAAAGSGKTAVLVERIIELVSNKEAKTDIDKLLVVTFTKAAA 68 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + + P+ + + + LL + T Sbjct: 69 AEMRERIGNALAEKIS---------------ENPDDTHLHRQLVLL-------NKANITT 106 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC+++++ + + +I F I D + + L+ E + L + N + F + Sbjct: 107 MHSFCQSLIKNYFHKLDIDPAFRIGDATEIELLLLETIEEVLEECYKEEN--ITIGFQRL 164 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +E + + + D+I ++L F + W +EK + + Sbjct: 165 VEGYGKNEDDKSVQDVI-----IRLYRFVMAMPWPESYLEKVVEAY 205 >gi|317494833|ref|ZP_07953244.1| DNA helicase II [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917158|gb|EFV38506.1| DNA helicase II [Enterobacteriaceae bacterium 9_2_54FAA] Length = 720 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ ++ ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSDLLNSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIEHLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+AN+ F I D + +L++ K ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQLRLLKRIVK----ALNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D+ + Sbjct: 138 PPRQGMWYINNKKDDGLR 155 >gi|320191094|gb|EFW65744.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli O157:H7 str. EC1212] Length = 720 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|187733738|ref|YP_001882507.1| DNA-dependent helicase II [Shigella boydii CDC 3083-94] gi|187430730|gb|ACD10004.1| DNA helicase II [Shigella boydii CDC 3083-94] gi|320176055|gb|EFW51124.1| ATP-dependent DNA helicase UvrD/PcrA [Shigella dysenteriae CDC 74-1112] Length = 720 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|30064891|ref|NP_839062.1| DNA-dependent helicase II [Shigella flexneri 2a str. 2457T] gi|56480441|ref|NP_709620.2| DNA-dependent helicase II [Shigella flexneri 2a str. 301] gi|110807496|ref|YP_691016.1| DNA-dependent helicase II [Shigella flexneri 5 str. 8401] gi|30043151|gb|AAP18873.1| DNA-dependent ATPase I and helicase II [Shigella flexneri 2a str. 2457T] gi|56383992|gb|AAN45327.2| DNA-dependent ATPase I and helicase II [Shigella flexneri 2a str. 301] gi|110617044|gb|ABF05711.1| DNA-dependent ATPase I and helicase II [Shigella flexneri 5 str. 8401] gi|281603206|gb|ADA76190.1| DNA-dependent ATPase I and helicase II [Shigella flexneri 2002017] gi|313647145|gb|EFS11600.1| DNA helicase II [Shigella flexneri 2a str. 2457T] Length = 720 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|292670883|ref|ZP_06604309.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas noxia ATCC 43541] gi|292647504|gb|EFF65476.1| ATP-dependent deoxyribonuclease subunit A [Selenomonas noxia ATCC 43541] Length = 1256 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 24/224 (10%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAA 75 + T +Q ++ V+A AGSGKT +LV+R++ + +L LT TKAAA Sbjct: 5 MQFTADQQKAIETRGQNILVAAAAGSGKTRVLVERIISQVRTGTLSLDRILVLTFTKAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ + A + I + G + + + + R LL G + T Sbjct: 65 SEMRERIEAALNAEIDV--------IVENGGALEDVAALERQRVLLT-------GADIST 109 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H+FC+ ++Q I F IA E++ + L + + + S + F Sbjct: 110 FHSFCQHLIQSHIDATEIPPTFRIASEQEIRLLKNDVFEQMIESEYEKAAAGDPEGFLSF 169 Query: 196 LEISND--EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 + D E L +I++ L F S + Sbjct: 170 SDAYGGVKGDDEKLQGEILA------LHAFSLSQPSPVTWLAAQ 207 >gi|309796243|ref|ZP_07690653.1| DNA helicase II [Escherichia coli MS 145-7] gi|308120125|gb|EFO57387.1| DNA helicase II [Escherichia coli MS 145-7] Length = 720 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|300921476|ref|ZP_07137824.1| DNA helicase II [Escherichia coli MS 115-1] gi|300411593|gb|EFJ94903.1| DNA helicase II [Escherichia coli MS 115-1] Length = 720 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|218707447|ref|YP_002414966.1| DNA-dependent helicase II [Escherichia coli UMN026] gi|331665463|ref|ZP_08366362.1| DNA helicase II [Escherichia coli TA143] gi|218434544|emb|CAR15471.1| DNA-dependent ATPase I and helicase II [Escherichia coli UMN026] gi|331057361|gb|EGI29350.1| DNA helicase II [Escherichia coli TA143] Length = 720 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|16131665|ref|NP_418258.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12 substr. MG1655] gi|89110206|ref|AP_003986.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12 substr. W3110] gi|170083295|ref|YP_001732615.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12 substr. DH10B] gi|193065672|ref|ZP_03046737.1| DNA helicase II [Escherichia coli E22] gi|194429230|ref|ZP_03061758.1| DNA helicase II [Escherichia coli B171] gi|194434041|ref|ZP_03066311.1| DNA helicase II [Shigella dysenteriae 1012] gi|218697531|ref|YP_002405198.1| DNA-dependent helicase II [Escherichia coli 55989] gi|238902889|ref|YP_002928685.1| DNA-dependent ATPase I and helicase II [Escherichia coli BW2952] gi|256021443|ref|ZP_05435308.1| DNA-dependent helicase II [Shigella sp. D9] gi|256026160|ref|ZP_05440025.1| DNA-dependent helicase II [Escherichia sp. 4_1_40B] gi|260846411|ref|YP_003224189.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli O103:H2 str. 12009] gi|293468131|ref|ZP_06664543.1| DNA helicase II [Escherichia coli B088] gi|300818716|ref|ZP_07098923.1| DNA helicase II [Escherichia coli MS 107-1] gi|300823349|ref|ZP_07103480.1| DNA helicase II [Escherichia coli MS 119-7] gi|300923317|ref|ZP_07139365.1| DNA helicase II [Escherichia coli MS 182-1] gi|300955181|ref|ZP_07167578.1| DNA helicase II [Escherichia coli MS 175-1] gi|301646119|ref|ZP_07246019.1| DNA helicase II [Escherichia coli MS 146-1] gi|307140512|ref|ZP_07499868.1| DNA-dependent helicase II [Escherichia coli H736] gi|307313613|ref|ZP_07593233.1| DNA helicase II [Escherichia coli W] gi|312971900|ref|ZP_07786074.1| DNA helicase II [Escherichia coli 1827-70] gi|331670659|ref|ZP_08371496.1| DNA helicase II [Escherichia coli TA271] gi|137194|sp|P03018|UVRD_ECOLI RecName: Full=DNA helicase II gi|43299|emb|CAA27671.1| unnamed protein product [Escherichia coli] gi|2367296|gb|AAC76816.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12 substr. MG1655] gi|85676237|dbj|BAE77487.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K12 substr. W3110] gi|169891130|gb|ACB04837.1| DNA-dependent ATPase I and helicase II [Escherichia coli str. K-12 substr. DH10B] gi|192926639|gb|EDV81268.1| DNA helicase II [Escherichia coli E22] gi|194412742|gb|EDX29036.1| DNA helicase II [Escherichia coli B171] gi|194417699|gb|EDX33798.1| DNA helicase II [Shigella dysenteriae 1012] gi|218354263|emb|CAV00941.1| DNA-dependent ATPase I and helicase II [Escherichia coli 55989] gi|238860998|gb|ACR62996.1| DNA-dependent ATPase I and helicase II [Escherichia coli BW2952] gi|257761558|dbj|BAI33055.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli O103:H2 str. 12009] gi|260451344|gb|ACX41766.1| DNA helicase II [Escherichia coli DH1] gi|291321509|gb|EFE60947.1| DNA helicase II [Escherichia coli B088] gi|300317898|gb|EFJ67682.1| DNA helicase II [Escherichia coli MS 175-1] gi|300420403|gb|EFK03714.1| DNA helicase II [Escherichia coli MS 182-1] gi|300524135|gb|EFK45204.1| DNA helicase II [Escherichia coli MS 119-7] gi|300528682|gb|EFK49744.1| DNA helicase II [Escherichia coli MS 107-1] gi|301075645|gb|EFK90451.1| DNA helicase II [Escherichia coli MS 146-1] gi|306906594|gb|EFN37106.1| DNA helicase II [Escherichia coli W] gi|309704248|emb|CBJ03596.1| DNA helicase II [Escherichia coli ETEC H10407] gi|310334277|gb|EFQ00482.1| DNA helicase II [Escherichia coli 1827-70] gi|315063105|gb|ADT77432.1| DNA-dependent ATPase I and helicase II [Escherichia coli W] gi|315138390|dbj|BAJ45549.1| DNA-dependent helicase II [Escherichia coli DH1] gi|315618489|gb|EFU99075.1| DNA helicase II [Escherichia coli 3431] gi|320198480|gb|EFW73081.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli EC4100B] gi|323161123|gb|EFZ47041.1| DNA helicase II [Escherichia coli E128010] gi|323182585|gb|EFZ67989.1| DNA helicase II [Escherichia coli 1357] gi|323380831|gb|ADX53099.1| DNA helicase II [Escherichia coli KO11] gi|323934201|gb|EGB30632.1| DNA helicase II [Escherichia coli E1520] gi|323938949|gb|EGB35168.1| DNA helicase II [Escherichia coli E482] gi|324115724|gb|EGC09659.1| DNA helicase II [Escherichia coli E1167] gi|331062132|gb|EGI34054.1| DNA helicase II [Escherichia coli TA271] gi|332084961|gb|EGI90143.1| DNA helicase II [Shigella dysenteriae 155-74] Length = 720 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|206579213|ref|YP_002241124.1| DNA helicase II [Klebsiella pneumoniae 342] gi|288937764|ref|YP_003441823.1| DNA helicase II [Klebsiella variicola At-22] gi|206568271|gb|ACI10047.1| DNA helicase II [Klebsiella pneumoniae 342] gi|288892473|gb|ADC60791.1| DNA helicase II [Klebsiella variicola At-22] Length = 720 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + AS + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAAS--RTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ T Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------T 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ L+AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|15804402|ref|NP_290442.1| DNA-dependent helicase II [Escherichia coli O157:H7 EDL933] gi|15833997|ref|NP_312770.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. Sakai] gi|74314325|ref|YP_312744.1| DNA-dependent helicase II [Shigella sonnei Ss046] gi|110644138|ref|YP_671868.1| DNA-dependent helicase II [Escherichia coli 536] gi|117626072|ref|YP_859395.1| DNA-dependent helicase II [Escherichia coli APEC O1] gi|161486051|ref|NP_756593.2| DNA-dependent helicase II [Escherichia coli CFT073] gi|162138327|ref|YP_543324.2| DNA-dependent helicase II [Escherichia coli UTI89] gi|168750375|ref|ZP_02775397.1| DNA helicase II [Escherichia coli O157:H7 str. EC4113] gi|168753710|ref|ZP_02778717.1| DNA helicase II [Escherichia coli O157:H7 str. EC4401] gi|168768094|ref|ZP_02793101.1| DNA helicase II [Escherichia coli O157:H7 str. EC4486] gi|168775636|ref|ZP_02800643.1| DNA helicase II [Escherichia coli O157:H7 str. EC4196] gi|168780712|ref|ZP_02805719.1| DNA helicase II [Escherichia coli O157:H7 str. EC4076] gi|168786651|ref|ZP_02811658.1| DNA helicase II [Escherichia coli O157:H7 str. EC869] gi|168801123|ref|ZP_02826130.1| DNA helicase II [Escherichia coli O157:H7 str. EC508] gi|170679582|ref|YP_001746130.1| DNA-dependent helicase II [Escherichia coli SMS-3-5] gi|191174264|ref|ZP_03035773.1| DNA helicase II [Escherichia coli F11] gi|194438675|ref|ZP_03070763.1| DNA helicase II [Escherichia coli 101-1] gi|195938102|ref|ZP_03083484.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. EC4024] gi|208807358|ref|ZP_03249695.1| DNA helicase II [Escherichia coli O157:H7 str. EC4206] gi|208813979|ref|ZP_03255308.1| DNA helicase II [Escherichia coli O157:H7 str. EC4045] gi|208819804|ref|ZP_03260124.1| DNA helicase II [Escherichia coli O157:H7 str. EC4042] gi|209396002|ref|YP_002273330.1| DNA helicase II [Escherichia coli O157:H7 str. EC4115] gi|215489141|ref|YP_002331572.1| DNA-dependent helicase II [Escherichia coli O127:H6 str. E2348/69] gi|218550963|ref|YP_002384754.1| DNA-dependent helicase II [Escherichia fergusonii ATCC 35469] gi|227888602|ref|ZP_04006407.1| excision endonuclease subunit UvrD [Escherichia coli 83972] gi|253775563|ref|YP_003038394.1| DNA-dependent helicase II [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163755|ref|YP_003046863.1| DNA-dependent helicase II [Escherichia coli B str. REL606] gi|254795809|ref|YP_003080646.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. TW14359] gi|261225587|ref|ZP_05939868.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7 str. FRIK2000] gi|261255633|ref|ZP_05948166.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7 str. FRIK966] gi|291285227|ref|YP_003502045.1| DNA helicase II [Escherichia coli O55:H7 str. CB9615] gi|293413255|ref|ZP_06655917.1| DNA helicase II [Escherichia coli B354] gi|301025742|ref|ZP_07189257.1| DNA helicase II [Escherichia coli MS 69-1] gi|301047305|ref|ZP_07194391.1| DNA helicase II [Escherichia coli MS 185-1] gi|306815148|ref|ZP_07449301.1| DNA-dependent helicase II [Escherichia coli NC101] gi|312969459|ref|ZP_07783661.1| DNA helicase II [Escherichia coli 2362-75] gi|331660158|ref|ZP_08361094.1| DNA helicase II [Escherichia coli TA206] gi|12518681|gb|AAG59006.1|AE005612_9 DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7 str. EDL933] gi|13364219|dbj|BAB38166.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7 str. Sakai] gi|73857802|gb|AAZ90509.1| DNA-dependent ATPase I and helicase II [Shigella sonnei Ss046] gi|110345730|gb|ABG71967.1| DNA helicase II [Escherichia coli 536] gi|115515196|gb|ABJ03271.1| DNA-dependent ATPase I and helicase II [Escherichia coli APEC O1] gi|170517300|gb|ACB15478.1| DNA helicase II [Escherichia coli SMS-3-5] gi|187768818|gb|EDU32662.1| DNA helicase II [Escherichia coli O157:H7 str. EC4196] gi|188015427|gb|EDU53549.1| DNA helicase II [Escherichia coli O157:H7 str. EC4113] gi|189001426|gb|EDU70412.1| DNA helicase II [Escherichia coli O157:H7 str. EC4076] gi|189359023|gb|EDU77442.1| DNA helicase II [Escherichia coli O157:H7 str. EC4401] gi|189362636|gb|EDU81055.1| DNA helicase II [Escherichia coli O157:H7 str. EC4486] gi|189373276|gb|EDU91692.1| DNA helicase II [Escherichia coli O157:H7 str. EC869] gi|189376660|gb|EDU95076.1| DNA helicase II [Escherichia coli O157:H7 str. EC508] gi|190905447|gb|EDV65077.1| DNA helicase II [Escherichia coli F11] gi|194422479|gb|EDX38478.1| DNA helicase II [Escherichia coli 101-1] gi|208727159|gb|EDZ76760.1| DNA helicase II [Escherichia coli O157:H7 str. EC4206] gi|208735256|gb|EDZ83943.1| DNA helicase II [Escherichia coli O157:H7 str. EC4045] gi|208739927|gb|EDZ87609.1| DNA helicase II [Escherichia coli O157:H7 str. EC4042] gi|209157402|gb|ACI34835.1| DNA helicase II [Escherichia coli O157:H7 str. EC4115] gi|209753228|gb|ACI74921.1| hypothetical protein ECs4743 [Escherichia coli] gi|209753230|gb|ACI74922.1| hypothetical protein ECs4743 [Escherichia coli] gi|209753232|gb|ACI74923.1| hypothetical protein ECs4743 [Escherichia coli] gi|209753234|gb|ACI74924.1| hypothetical protein ECs4743 [Escherichia coli] gi|209753236|gb|ACI74925.1| hypothetical protein ECs4743 [Escherichia coli] gi|215267213|emb|CAS11661.1| DNA-dependent ATPase I and helicase II UvrD [Escherichia coli O127:H6 str. E2348/69] gi|218358504|emb|CAQ91151.1| DNA-dependent ATPase I and helicase II [Escherichia fergusonii ATCC 35469] gi|227834441|gb|EEJ44907.1| excision endonuclease subunit UvrD [Escherichia coli 83972] gi|242379343|emb|CAQ34155.1| DNA-dependent ATPase I and helicase II, subunit of UvrABC Nucleotide Excision Repair Complex [Escherichia coli BL21(DE3)] gi|253326607|gb|ACT31209.1| DNA helicase II [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975656|gb|ACT41327.1| DNA-dependent ATPase I and helicase II [Escherichia coli B str. REL606] gi|253979812|gb|ACT45482.1| DNA-dependent ATPase I and helicase II [Escherichia coli BL21(DE3)] gi|254595209|gb|ACT74570.1| DNA-dependent ATPase I and helicase II [Escherichia coli O157:H7 str. TW14359] gi|281180862|dbj|BAI57192.1| DNA helicase II [Escherichia coli SE15] gi|284923921|emb|CBG37020.1| DNA helicase II [Escherichia coli 042] gi|290765100|gb|ADD59061.1| DNA helicase II [Escherichia coli O55:H7 str. CB9615] gi|291468203|gb|EFF10700.1| DNA helicase II [Escherichia coli B354] gi|294492576|gb|ADE91332.1| DNA helicase II [Escherichia coli IHE3034] gi|300300824|gb|EFJ57209.1| DNA helicase II [Escherichia coli MS 185-1] gi|300395865|gb|EFJ79403.1| DNA helicase II [Escherichia coli MS 69-1] gi|305851517|gb|EFM51971.1| DNA-dependent helicase II [Escherichia coli NC101] gi|307555939|gb|ADN48714.1| DNA helicase II [Escherichia coli ABU 83972] gi|307628876|gb|ADN73180.1| DNA-dependent helicase II [Escherichia coli UM146] gi|312286006|gb|EFR13924.1| DNA helicase II [Escherichia coli 2362-75] gi|315296794|gb|EFU56086.1| DNA helicase II [Escherichia coli MS 16-3] gi|320197622|gb|EFW72234.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli WV_060327] gi|320639296|gb|EFX08918.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. G5101] gi|320644681|gb|EFX13731.1| DNA-dependent helicase II [Escherichia coli O157:H- str. 493-89] gi|320650006|gb|EFX18509.1| DNA-dependent helicase II [Escherichia coli O157:H- str. H 2687] gi|320655352|gb|EFX23294.1| DNA-dependent helicase II [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660978|gb|EFX28421.1| DNA-dependent helicase II [Escherichia coli O55:H7 str. USDA 5905] gi|320666102|gb|EFX33116.1| DNA-dependent helicase II [Escherichia coli O157:H7 str. LSU-61] gi|323167561|gb|EFZ53267.1| DNA helicase II [Shigella sonnei 53G] gi|323189761|gb|EFZ75040.1| DNA helicase II [Escherichia coli RN587/1] gi|323949303|gb|EGB45193.1| DNA helicase II [Escherichia coli H252] gi|323954020|gb|EGB49818.1| DNA helicase II [Escherichia coli H263] gi|323959068|gb|EGB54737.1| DNA helicase II [Escherichia coli H489] gi|323969346|gb|EGB64645.1| DNA helicase II [Escherichia coli TA007] gi|323974395|gb|EGB69523.1| DNA helicase II [Escherichia coli TW10509] gi|324111038|gb|EGC05025.1| DNA helicase II [Escherichia fergusonii B253] gi|326344269|gb|EGD68029.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli O157:H7 str. 1125] gi|326347903|gb|EGD71617.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli O157:H7 str. 1044] gi|330908113|gb|EGH36632.1| ATP-dependent DNA helicase UvrD/PcrA [Escherichia coli AA86] gi|331052726|gb|EGI24761.1| DNA helicase II [Escherichia coli TA206] Length = 720 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|323964058|gb|EGB59548.1| DNA helicase II [Escherichia coli M863] gi|327250663|gb|EGE62369.1| DNA helicase II [Escherichia coli STEC_7v] Length = 720 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|300812417|ref|ZP_07092847.1| ATP-dependent nuclease subunit A [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496584|gb|EFK31676.1| ATP-dependent nuclease subunit A [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 1227 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 26/222 (11%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + T + + VSA+AGSGKT +LV+RV+R ++ + + LL +T T+AAA Sbjct: 3 VKYTPDQARAIESRGQDILVSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAA 62 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ + + + A+ L L + T Sbjct: 63 SEMKQRIKQRLQDRLQEETDASQADF-------------------LRRQLAEIDTAIIST 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIMLDNNEELKKAFYE 194 I +FC ++++F +I F+I + +L++E A + + + ++ K F Sbjct: 104 IDSFCLDVIRRFYFAIDIDPDFSILTDATQIELLKERALRDVENGYLQNEDQAKKDRFLA 163 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + D++ L L F + R ++K Sbjct: 164 LYDAFAGDSNANSARDLL-----LDLYQFAMARPNYRAWLQK 200 >gi|307692433|ref|ZP_07634670.1| DNA helicase/exodeoxyribonuclease V, subunit A [Ruminococcaceae bacterium D16] Length = 1206 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 97/227 (42%), Gaps = 36/227 (15%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78 T+ ++ + D VSA AGSGKT +LV+R+L + + L +T+TKAAAAE+ Sbjct: 6 TEEQRKIVDDRGGELLVSAAAGSGKTRVLVERLLDRVTGEGLDITQFLVITYTKAAAAEL 65 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + E+++ + PN + + L+ ++ TIHA Sbjct: 66 RGRIAQ---------------ELSQRLAQNPNDRHLRRQTTLVYQA-------QISTIHA 103 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD--NNEELKKAFYEIL 196 FC A++++ ++ F + DE + + + + L + ++ + Sbjct: 104 FCAALLRESGHLLDLDPDFRLCDEGEGAVMTAQVLQDVLEEQYENLQEGDDFSLLVDTLA 163 Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII--EKSLWSI 241 +D +E ++ D+ S+ + + +K++W++ Sbjct: 164 AGRDDSRLEQIVLDVFGR---------IQSHPDPAQWLFEQKAVWAL 201 >gi|297531123|ref|YP_003672398.1| recombination helicase AddA [Geobacillus sp. C56-T3] gi|297254375|gb|ADI27821.1| recombination helicase AddA [Geobacillus sp. C56-T3] Length = 1242 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 93/219 (42%), Gaps = 33/219 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKAAA 75 T + + R V+A AGSGKT +LV+R+++ + A LL +T T AAA Sbjct: 14 WTDEQWKAIAAGGRDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDRLLVVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ E + + K+P+ + + LL + T Sbjct: 74 AEMKARIGEAL---------------ERELAKRPHSLHLRRQLSLLPRA-------AIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++++ ++ F IADE + + L E+ + L + E F+ + Sbjct: 112 LHSFCLDVIRKYYYLLDLDPSFRIADETEIELLKEDVLEELLEEEYGKPDNER---FFAV 168 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 ++ + + + ++I + L F S+ + + Sbjct: 169 VDAYTGDRSDAELQEMI-----VALYEFSRSHPEPDEWL 202 >gi|167631017|ref|YP_001681516.1| ATP-dependent deoxyribonuclease subunit a [Heliobacterium modesticaldum Ice1] gi|251764526|sp|B0TDI0|ADDA_HELMI RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|167593757|gb|ABZ85505.1| ATP-dependent deoxyribonuclease subunit a [Heliobacterium modesticaldum Ice1] Length = 1396 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 32/225 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T + + V+A AG+GKT +LV+R++ ++ LL +T T AAAAEM Sbjct: 28 WTDEQWQAITARNSDILVAAAAGAGKTAVLVERLIGIIKEGVDVDRLLVVTFTNAAAAEM 87 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +TK + P+++ + + LL + T+H+ Sbjct: 88 RERIR---------------TALTKELARHPHQTWLRQQLVLL-------NRATITTLHS 125 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML-----DNNEELKKAFY 193 FC +++++ ++ F +ADE + L ++ + E + F Sbjct: 126 FCLDLVRKYYYRLDLDPAFRVADETEIALLRQDVLDEVFERFYERAGAKEGTESKGEYFT 185 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +++ + ++ + DI+ L+L S W + ++ L Sbjct: 186 ALVDAYGGDRDDSPLQDIV-----LQLYEKALSQPWPEQWLQDIL 225 >gi|300904068|ref|ZP_07121948.1| DNA helicase II [Escherichia coli MS 84-1] gi|301303709|ref|ZP_07209830.1| DNA helicase II [Escherichia coli MS 124-1] gi|300403948|gb|EFJ87486.1| DNA helicase II [Escherichia coli MS 84-1] gi|300841009|gb|EFK68769.1| DNA helicase II [Escherichia coli MS 124-1] gi|315254178|gb|EFU34146.1| DNA helicase II [Escherichia coli MS 85-1] Length = 720 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|261418926|ref|YP_003252608.1| recombination helicase AddA [Geobacillus sp. Y412MC61] gi|319765743|ref|YP_004131244.1| recombination helicase AddA [Geobacillus sp. Y412MC52] gi|261375383|gb|ACX78126.1| recombination helicase AddA [Geobacillus sp. Y412MC61] gi|317110609|gb|ADU93101.1| recombination helicase AddA [Geobacillus sp. Y412MC52] Length = 1242 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 93/219 (42%), Gaps = 33/219 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKAAA 75 T + + R V+A AGSGKT +LV+R+++ + A LL +T T AAA Sbjct: 14 WTDEQWKAIAAGGRDILVAAAAGSGKTAVLVERIIQKVTAEEGAVDIDRLLVVTFTNAAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ E + + K+P+ + + LL + T Sbjct: 74 AEMKARIGEAL---------------ERELAKRPHSLHLRRQLSLLPRA-------AIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++++ ++ F IADE + + L E+ + L + E F+ + Sbjct: 112 LHSFCLDVIRKYYYLLDLDPSFRIADETEIELLKEDVLEELLEEEYGKPDNER---FFAV 168 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 ++ + + + ++I + L F S+ + + Sbjct: 169 VDAYTGDRSDAELQEMI-----VALYEFSRSHPEPDEWL 202 >gi|325125706|gb|ADY85036.1| ATP-dependent exonuclease subunit A [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 1227 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 26/222 (11%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + T + + VSA+AGSGKT +LV+RV+R ++ + + LL +T T+AAA Sbjct: 3 VKYTPDQARAIESRGQDLLVSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAA 62 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ + + + A+ L L + T Sbjct: 63 SEMKQRIKQRLQDRLQEETDASQADF-------------------LRRQLAEIDTAIIST 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIMLDNNEELKKAFYE 194 I +FC ++++F +I F+I + +L++E A + + + ++ K F Sbjct: 104 IDSFCLDVIRRFYFAIDIDPDFSILTDATQIELLKERALRDVENGYLQNEDQAKKDRFLA 163 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + D++ L F + R ++K Sbjct: 164 LYDAFAGDSNANSARDLL-----FDLYQFAMARPNYRAWLQK 200 >gi|238018401|ref|ZP_04598827.1| hypothetical protein VEIDISOL_00227 [Veillonella dispar ATCC 17748] gi|237864872|gb|EEP66162.1| hypothetical protein VEIDISOL_00227 [Veillonella dispar ATCC 17748] Length = 1266 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 94/232 (40%), Gaps = 37/232 (15%) Query: 16 LISQTKSEQLLASDPTRS------AWVSANAGSGKTHILVQRVLRLLLANAHP---STLL 66 + T ++ P S V+A AGSGKT +LV+R++ L +P L+ Sbjct: 2 GVKWTPEQESAIIAPKDSSLDNQTLLVAAAAGSGKTAVLVERIITRLKDMDNPLSVQELM 61 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T TKAAA EMS R+ + +D+ + L L Sbjct: 62 VVTFTKAAAQEMSARIGLALAKAMESTDD-------------------EAMQQRLERQLN 102 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + T+H+FC+ +++ + + +I I +E + L +E LA ++ + E Sbjct: 103 LLPSAHISTLHSFCQWVIRSYFYKLDINPTARIGNEAEMALLQQE----VLADLLTKSYE 158 Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 E YE+ + +D+ + ++ I + L + S + K+L Sbjct: 159 EGLYNIYELADFFSDDKSDAGLTAKI-----MSLYNYAMSLANPDGWLRKAL 205 >gi|226326684|ref|ZP_03802202.1| hypothetical protein PROPEN_00537 [Proteus penneri ATCC 35198] gi|225204905|gb|EEG87259.1| hypothetical protein PROPEN_00537 [Proteus penneri ATCC 35198] Length = 506 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ++ ++ + E + A P + V A AGSGKT +LV R+ LL + A P +++ Sbjct: 2 DVSYLLEGLNDKQREAVAA--PRINMLVLAGAGSGKTRVLVHRIAWLLSVEQASPFSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++I + Sbjct: 60 VTFTNKAAAEMRHRIEDLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H+ +++ L+AN+ F I D + +LI KS LD+ + Sbjct: 82 QGGMWIGTFHSLAHRLLRAHYLDANLPQDFQIIDSDDQYRLIRRIVKSM----NLDDKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PARQGMWYINGKKDEGLR 155 >gi|222035511|emb|CAP78256.1| DNA helicase II [Escherichia coli LF82] gi|312948366|gb|ADR29193.1| DNA-dependent helicase II [Escherichia coli O83:H1 str. NRG 857C] Length = 720 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|238892413|ref|YP_002917147.1| DNA-dependent helicase II [Klebsiella pneumoniae NTUH-K2044] gi|238544729|dbj|BAH61080.1| DNA-dependent ATPase I and helicase II [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 722 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + AS + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 4 DVSYLLDSLNDKQREAVAAS--RTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 61 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ T Sbjct: 62 VTFTNKAAAEMRHRIGQLMGT--------------------------------------T 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ L+AN+ F I D E +L+ K + ++ LD + Sbjct: 84 QGGMWVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 139 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 140 PPRQAMWYINSQKDEGLR 157 >gi|191166051|ref|ZP_03027886.1| DNA helicase II [Escherichia coli B7A] gi|190903827|gb|EDV63541.1| DNA helicase II [Escherichia coli B7A] Length = 720 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|216673|dbj|BAA00048.1| uvrD [Escherichia coli] gi|355936|prf||1207236A helicase II Length = 720 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|222150842|ref|YP_002559995.1| hypothetical protein MCCL_0592 [Macrococcus caseolyticus JCSC5402] gi|222119964|dbj|BAH17299.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 1148 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 84/221 (38%), Gaps = 32/221 (14%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 + T S+Q + V+A AGSGKT +LV+R++R ++ + LL +T T A+A Sbjct: 1 MQWTASQQEAIVTTGQDTLVAAAAGSGKTAVLVERIIRKIIDQSVNVDELLVVTFTNASA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM HR+ + P+ + L + T Sbjct: 61 KEMKHRIFNRLQEA---------------LNDAPHNEHLKTQLIKLHQA-------DIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H FC ++++F ++ F A EE+ L+ +A L +I + + + Sbjct: 99 LHRFCLNLIERFYYTIDLDPTFRTASEEERALLLMQAIDDVLETIYEAAHPDDMTLLLHL 158 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 D+ + + +KL F + + +E Sbjct: 159 SSDRKDDYVRKTL---------VKLYNFAIANSHPSRWLEA 190 >gi|213622282|ref|ZP_03375065.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 495 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|218701273|ref|YP_002408902.1| DNA-dependent helicase II [Escherichia coli IAI39] gi|218371259|emb|CAR19093.1| DNA-dependent ATPase I and helicase II [Escherichia coli IAI39] Length = 720 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|300310196|ref|YP_003774288.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1] gi|300072981|gb|ADJ62380.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae SmR1] Length = 1158 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 7/214 (3%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 +++ + E +D T A DP S V A AGSGKT +LV R+LRLLLA A L Sbjct: 10 AYEVNGEAVDAAVFT----RAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGAQAPEL 65 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN-KSDMSKARHLLITI 124 L +T T+ AA EM R+LE++ + + +A + + +P+ + AR L I Sbjct: 66 LAITFTRKAAQEMRERLLELLHELALADEAGAAALLRERGVAEPDLPRLLPLARGLYERI 125 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 L + L + T H++ ++Q PL + + + + E++ +L++EA + + ++ Sbjct: 126 LSSEQSLSIDTFHSWFARLLQIAPLASGVPYGYTLT--EKNGELLDEAYRRFMQTLREPE 183 Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTAL 218 +K A E+ E++ D + L+ I R Sbjct: 184 GAHIKAALLELYELAGDFNARQLLDAFIDKRAEW 217 >gi|330432051|gb|AEC17110.1| DNA-dependent helicase II [Gallibacterium anatis UMN179] Length = 721 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 38/168 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D +++ + E + A P + V A AGSGKT +L R+ L+ + N P+ +L Sbjct: 2 DFSELLDGLNERQREAVAA--PLGNYLVLAGAGSGKTRVLTYRIAWLIGVENVSPNGILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + LL + Sbjct: 60 VTFTNKAAAEMRHRIED-----------------------------------LLQDQITP 84 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 P G+ V T H+ ++++ +A + + F I D E +L++ KS Sbjct: 85 PFGMWVGTFHSLAHRLLRRHAPDAGLPADFQILDSEDQLRLVKRLVKS 132 >gi|168763938|ref|ZP_02788945.1| DNA helicase II [Escherichia coli O157:H7 str. EC4501] gi|217325077|ref|ZP_03441161.1| DNA helicase II [Escherichia coli O157:H7 str. TW14588] gi|189365967|gb|EDU84383.1| DNA helicase II [Escherichia coli O157:H7 str. EC4501] gi|217321298|gb|EEC29722.1| DNA helicase II [Escherichia coli O157:H7 str. TW14588] Length = 720 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|325686249|gb|EGD28292.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 1227 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 26/222 (11%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + T + + VSA+AGSGKT +LV+RV+R ++ + + LL +T T+AAA Sbjct: 3 VKYTPDQARAIESRGQDILVSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAA 62 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ + + + A+ L L + T Sbjct: 63 SEMKQRIKQRLQDRLQEETDASQADF-------------------LRRQLAEIDTAIIST 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIMLDNNEELKKAFYE 194 I +FC ++++F +I F+I + +L++E A + + + ++ K F Sbjct: 104 IDSFCLDVIRRFYFAIDIDPDFSILTDATQIELLKERALRDVENGYLQNEDQAKKDRFLA 163 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + D++ L L F + R ++K Sbjct: 164 LYDAFAGDSNANSARDLL-----LDLYQFAMARPNYRAWLQK 200 >gi|104774001|ref|YP_618981.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|123251916|sp|Q1GAA9|ADDA_LACDA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|103423082|emb|CAI97803.1| ATP-dependent deoxyribonuclease subunit A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 1227 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 26/222 (11%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + T + + VSA+AGSGKT +LV+RV+R ++ + + LL +T T+AAA Sbjct: 3 VKYTPDQARAIESRGQDLLVSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAA 62 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ + + + A+ L L + T Sbjct: 63 SEMKQRIKQRLQDRLQEETDASQADF-------------------LRRQLAEIDTAIIST 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIMLDNNEELKKAFYE 194 I +FC ++++F +I F+I + +L++E A + + + ++ K F Sbjct: 104 IDSFCLDVIRRFYFAIDIDPDFSILTDATQIELLKERALRDVENGYLQNEDQAKKDRFLA 163 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + D++ L L F + R ++K Sbjct: 164 LYDAFAGDSNANSARDLL-----LDLYQFAMARPNYRAWLQK 200 >gi|88703287|ref|ZP_01101003.1| UvrD/REP helicase family protein [Congregibacter litoralis KT71] gi|88702001|gb|EAQ99104.1| UvrD/REP helicase family protein [Congregibacter litoralis KT71] Length = 1107 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 7/205 (3%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 +L A DP S VSA AGSGKT +LVQR L LL + P +++ +T T+ AAAEM Sbjct: 5 DNEARLRAVDPGLSVCVSAPAGSGKTALLVQRFLGLLARVSEPESVVAITFTRKAAAEMR 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV+ + + E + + +L+ P L++QTI +F Sbjct: 65 ARVVGALQGAAEGVKARNPHEEALMAAARAVAEH---DGSRGWGLLDNPSRLRIQTIDSF 121 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE-ILEI 198 C + +Q P+ + D S+ L EA ++ L + ++ + +L + Sbjct: 122 CGYLTRQMPVLSGCGGQVTATD--DSRVLYREAIENFLHGELNRRQDDKARDIETLLLHL 179 Query: 199 SNDEDIE-TLISDIISNRTALKLIF 222 N+ D L+S ++ R + +F Sbjct: 180 DNNWDSALELLSKLLQRREQWQPVF 204 >gi|269798726|ref|YP_003312626.1| recombination helicase AddA [Veillonella parvula DSM 2008] gi|269095355|gb|ACZ25346.1| recombination helicase AddA [Veillonella parvula DSM 2008] Length = 1288 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 98/232 (42%), Gaps = 37/232 (15%) Query: 16 LISQTKSEQLLASDPTRS------AWVSANAGSGKTHILVQRVLRLLLANAHP---STLL 66 + T ++ P S V+A AGSGKT +LV+R++ L +P L+ Sbjct: 2 GVKWTPEQESAIIAPKDSSLDNQTLLVAAAAGSGKTAVLVERIITRLKDMDNPLSVQELM 61 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T TKAAA EMS R+ + +++ E + + +LL + Sbjct: 62 VVTFTKAAAQEMSARIGLALAKAMESTEDAAMQE------------RLERQLNLLPSA-- 107 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + T+H+FC+ +++ + + +I I +E + L +E LA ++ + E Sbjct: 108 -----HISTLHSFCQWVIRSYFYKLDINPTARIGNEAEMALLQQE----VLADLLTKSYE 158 Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 E YE+ + +D+ + ++ I + L + S + K+L Sbjct: 159 EGLYNIYELADFFSDDKSDAGLTAKI-----MSLYNYAMSLANPDGWLRKAL 205 >gi|126030797|pdb|2IS1|A Chain A, Crystal Structure Of Uvrd-Dna-So4 Complex gi|126030798|pdb|2IS1|B Chain B, Crystal Structure Of Uvrd-Dna-So4 Complex gi|126030803|pdb|2IS2|A Chain A, Crystal Structure Of Uvrd-Dna Binary Complex gi|126030804|pdb|2IS2|B Chain B, Crystal Structure Of Uvrd-Dna Binary Complex gi|126030807|pdb|2IS4|A Chain A, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex gi|126030808|pdb|2IS4|B Chain B, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex gi|126030811|pdb|2IS6|A Chain A, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex gi|126030812|pdb|2IS6|B Chain B, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex Length = 680 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|116514017|ref|YP_812923.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275213|sp|Q04AN7|ADDA_LACDB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116093332|gb|ABJ58485.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 1227 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 26/222 (11%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + T + + VSA+AGSGKT +LV+RV+R ++ + + LL +T T+AAA Sbjct: 3 VKYTPDQARAIESRGQDLLVSASAGSGKTSVLVERVIREIMDDHLEVNQLLVITFTRAAA 62 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ + + + A+ L L + T Sbjct: 63 SEMKQRIKQRLQDRLQEETDASQADF-------------------LRRQLAEIDTAIIST 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIMLDNNEELKKAFYE 194 I +FC ++++F +I F+I + +L++E A + + + ++ K F Sbjct: 104 IDSFCLDVIRRFYFAIDIDPDFSILTDATQIELLKERALRDVENGYLQNEDQAKKDRFLA 163 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + D++ L F + R ++K Sbjct: 164 LYDAFAGDSNANSARDLL-----FDLYQFAMARPNYRAWLQK 200 >gi|314933179|ref|ZP_07840544.1| ATP-dependent nuclease subunit A [Staphylococcus caprae C87] gi|313653329|gb|EFS17086.1| ATP-dependent nuclease subunit A [Staphylococcus caprae C87] Length = 1218 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 87/219 (39%), Gaps = 32/219 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +LV+R++ R+L N LL +T T +A E Sbjct: 11 WTDAQWRSIYAKGQDVLVAAAAGSGKTAVLVERIIQRILRDNMDVDLLLVVTFTNLSARE 70 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV + I S +P+ + R + ++ T+H Sbjct: 71 MKLRVDQRIQEASL---------------AEPDNEHLKNQRVKIHQA-------QISTLH 108 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +FC ++Q +I +F + E ++ L+++ L + + + ++ Sbjct: 109 SFCLKLIQLHYDVLDIDPNFRTSSEAENVLLLDQTIDDVLERHYDILDSDFIELTEQLSS 168 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ND+ +I +L FF + K +++ Sbjct: 169 DRNDDQFRNIIK---------RLYFFSIANPNPFKWLDQ 198 >gi|152972801|ref|YP_001337947.1| DNA-dependent helicase II [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|329997488|ref|ZP_08302790.1| DNA helicase II [Klebsiella sp. MS 92-3] gi|150957650|gb|ABR79680.1| DNA-dependent ATPase I and helicase II [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328539056|gb|EGF65095.1| DNA helicase II [Klebsiella sp. MS 92-3] Length = 720 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + AS + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAAS--RTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ T Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------T 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ L+AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|255523282|ref|ZP_05390252.1| recombination helicase AddA [Clostridium carboxidivorans P7] gi|255512936|gb|EET89206.1| recombination helicase AddA [Clostridium carboxidivorans P7] Length = 1226 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 41/229 (17%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKAAA 75 T+ ++ + V+A AG+GKT +LV+R+++ + N LL +T T AAA Sbjct: 5 WTQEQREAIFTKNCNLLVAAGAGAGKTAVLVERIIQKITDNEDDVDVDKLLVVTFTNAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ + I+ K P ++ K LL + T Sbjct: 65 SEMRERIGDAIS---------------KKLEVMPESKNLQKQLMLL-------NKSNIMT 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ ++ +F + DE +S L +E T+ + D E+ + F ++ Sbjct: 103 IHSFCLQVIKNNFHIIDLDPNFRVCDETESILLKQE----TIDEVFEDKYEQSDEGFIQL 158 Query: 196 LE---ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 ++ ND +E +I D L F S W K I + Sbjct: 159 VKCYGGKNDFKVENMILD---------LYEFAKSNPWPEKWISTMVERF 198 >gi|320178104|gb|EFW53084.1| ATP-dependent DNA helicase UvrD/PcrA [Shigella boydii ATCC 9905] Length = 720 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMST--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|312872979|ref|ZP_07733039.1| ATP-dependent helicase/nuclease subunit A family protein [Lactobacillus iners LEAF 2062A-h1] gi|311091501|gb|EFQ49885.1| ATP-dependent helicase/nuclease subunit A family protein [Lactobacillus iners LEAF 2062A-h1] Length = 201 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 24/198 (12%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ I + L L L + T Sbjct: 61 SEMKLRIKNAIKNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++++F N+ +F+I ++ L++E +N ++ FY Sbjct: 99 IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157 Query: 196 LEISNDEDIETLISDIIS 213 + D ++E S ++ Sbjct: 158 -NFAGDREVEAARSMLLE 174 >gi|209921291|ref|YP_002295375.1| DNA-dependent helicase II [Escherichia coli SE11] gi|209914550|dbj|BAG79624.1| DNA helicase II [Escherichia coli SE11] gi|324016210|gb|EGB85429.1| DNA helicase II [Escherichia coli MS 117-3] Length = 720 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKTMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|296188218|ref|ZP_06856610.1| ATP-dependent nuclease subunit A [Clostridium carboxidivorans P7] gi|296047344|gb|EFG86786.1| ATP-dependent nuclease subunit A [Clostridium carboxidivorans P7] Length = 1243 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 41/229 (17%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKAAA 75 T+ ++ + V+A AG+GKT +LV+R+++ + N LL +T T AAA Sbjct: 5 WTQEQREAIFTKNCNLLVAAGAGAGKTAVLVERIIQKITDNEDDVDVDKLLVVTFTNAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ + I+ K P ++ K LL + T Sbjct: 65 SEMRERIGDAIS---------------KKLEVMPESKNLQKQLMLL-------NKSNIMT 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ ++ +F + DE +S L +E T+ + D E+ + F ++ Sbjct: 103 IHSFCLQVIKNNFHIIDLDPNFRVCDETESILLKQE----TIDEVFEDKYEQSDEGFIQL 158 Query: 196 LE---ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 ++ ND +E +I D L F S W K I + Sbjct: 159 VKCYGGKNDFKVENMILD---------LYEFAKSNPWPEKWISTMVERF 198 >gi|282849710|ref|ZP_06259094.1| ATP-dependent nuclease subunit A [Veillonella parvula ATCC 17745] gi|282580647|gb|EFB86046.1| ATP-dependent nuclease subunit A [Veillonella parvula ATCC 17745] Length = 1251 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 99/232 (42%), Gaps = 37/232 (15%) Query: 16 LISQTKSEQLLASDPTRS------AWVSANAGSGKTHILVQRVLRLLLANAHP---STLL 66 + T ++ P S V+A AGSGKT +LV+R++ L +P L+ Sbjct: 2 GVKWTPEQESAIIAPKDSSLDNQTLLVAAAAGSGKTAVLVERIITRLKDMDNPLSVQELM 61 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T TKAAA EMS R+ + +D+ ++ + + +LL + Sbjct: 62 VVTFTKAAAQEMSARIGLALAKAMESTDDA------------ALQARLERQLNLLPSA-- 107 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + T+H+FC+ +++ + + +I I +E + L +E LA ++ + E Sbjct: 108 -----HISTLHSFCQWVIRSYFYKLDINPTARIGNEAEMALLQQE----VLADLLTKSYE 158 Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 E YE+ + +D+ + ++ I + L + S + K+L Sbjct: 159 EGLYNIYELADFFSDDKSDAGLTAKI-----MSLYNYAMSLANPDGWLRKAL 205 >gi|329920263|ref|ZP_08277047.1| hypothetical protein HMPREF9210_0804 [Lactobacillus iners SPIN 1401G] gi|328936308|gb|EGG32756.1| hypothetical protein HMPREF9210_0804 [Lactobacillus iners SPIN 1401G] Length = 201 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 30/219 (13%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ I + L L L + T Sbjct: 61 SEMKLRIKNAIKNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++++F N+ +F+I ++ L++E +N ++ FY Sbjct: 99 IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKEKALLNTEKYFFENKDQEFIDFYN- 157 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 + D ++E S + L+L + + + Sbjct: 158 -NFAGDREVEAARSML------LELYYVTLAQPNYEAFL 189 >gi|303231758|ref|ZP_07318481.1| ATP-dependent nuclease subunit A [Veillonella atypica ACS-049-V-Sch6] gi|302513707|gb|EFL55726.1| ATP-dependent nuclease subunit A [Veillonella atypica ACS-049-V-Sch6] Length = 1273 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 37/232 (15%) Query: 16 LISQTKSEQLLASDPTRS------AWVSANAGSGKTHILVQRVLRLLLANAHP---STLL 66 + T ++ P S V+A AGSGKT +LV+R++ L +P L+ Sbjct: 2 GVKWTPEQESAIMSPKDSNLGAQTLLVAAAAGSGKTAVLVERIITRLKDMENPLSVQELM 61 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T TKAAAAEMS R+ + +D+ K ++ + + +LL + Sbjct: 62 VVTFTKAAAAEMSARIGVALAKAMESTDD------------KALQARLERQLNLLPSA-- 107 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + T+H+FC+ +++ + + +I I +E + L +E L +++ + E Sbjct: 108 -----HISTLHSFCQWVIRSYFYKLDIPPTARIGNEAEMALLKQE----VLENLLKEAYE 158 Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +++ + +D+ + + D L L F S + ++ Sbjct: 159 HNMYGIFDLSDFFSDDKSDAGLQD-----KVLSLYEFAMSQSNSDGWMRHAV 205 >gi|218692089|ref|YP_002400301.1| DNA-dependent helicase II [Escherichia coli ED1a] gi|218429653|emb|CAR10617.2| DNA-dependent ATPase I and helicase II [Escherichia coli ED1a] Length = 720 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDTEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|294794377|ref|ZP_06759513.1| ATP-dependent nuclease subunit A [Veillonella sp. 3_1_44] gi|294454707|gb|EFG23080.1| ATP-dependent nuclease subunit A [Veillonella sp. 3_1_44] Length = 1251 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 99/232 (42%), Gaps = 37/232 (15%) Query: 16 LISQTKSEQLLASDPTRS------AWVSANAGSGKTHILVQRVLRLLLANAHP---STLL 66 + T ++ P S V+A AGSGKT +LV+R++ L +P L+ Sbjct: 2 GVKWTPEQESAIIAPKDSSLDNQTLLVAAAAGSGKTAVLVERIITRLKDMDNPLSVQELM 61 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T TKAAA EMS R+ + +D+ ++ + + +LL + Sbjct: 62 VVTFTKAAAQEMSARIGLALAKAMESTDDA------------ALQARLERQLNLLPSA-- 107 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + T+H+FC+ +++ + + +I I +E + L +E LA ++ + E Sbjct: 108 -----HISTLHSFCQWVIRSYFYKLDINPTARIGNEAEMALLQQE----VLADLLTKSYE 158 Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 E YE+ + +D+ + ++ I + L + S + K+L Sbjct: 159 EGLYNIYELADFFSDDKSDAGLTAKI-----MSLYNYAMSLANPDGWLRKAL 205 >gi|259046745|ref|ZP_05737146.1| ATP-dependent deoxyribonuclease subunit A [Granulicatella adiacens ATCC 49175] gi|259036641|gb|EEW37896.1| ATP-dependent deoxyribonuclease subunit A [Granulicatella adiacens ATCC 49175] Length = 1231 Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 84/220 (38%), Gaps = 30/220 (13%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + T + + + VSA+AGSGKT +LV+R+L + + LL +T T+ AA Sbjct: 8 GLQATPDQWKAIATRGNNLLVSASAGSGKTKVLVERILMHIQEGIDINELLVVTFTELAA 67 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + + KS + L+ + T Sbjct: 68 KEMKERLRSKL-------------------EEAIEKSTDEVLQQRFAKQLQLIPSAMIST 108 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++++ A I F + DE + + L E+ ++ L E ++ F Sbjct: 109 IHSFCMKVIRRYFYLAGIDPVFTMMDEIEGQLLQEKVWRA--LEEELLEQPEYEEVFATF 166 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 +D+ I T +L + S + + Sbjct: 167 SSDRSDDGITN---------TVYRLYQYSRSKREPKTWLS 197 >gi|157144441|ref|YP_001451760.1| DNA-dependent helicase II [Citrobacter koseri ATCC BAA-895] gi|157081646|gb|ABV11324.1| hypothetical protein CKO_00155 [Citrobacter koseri ATCC BAA-895] Length = 720 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ++ ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSYLLESLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ T Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------T 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|262040875|ref|ZP_06014101.1| excision endonuclease subunit UvrD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041764|gb|EEW42809.1| excision endonuclease subunit UvrD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 720 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + AS + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAAS--RTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ T Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------T 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ L+AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINNQKDEGLR 155 >gi|289829109|ref|ZP_06546783.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 539 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|160895394|ref|ZP_02076164.1| hypothetical protein CLOL250_02952 [Clostridium sp. L2-50] gi|156862965|gb|EDO56396.1| hypothetical protein CLOL250_02952 [Clostridium sp. L2-50] Length = 1247 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 86/232 (37%), Gaps = 41/232 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL----------ANAHPSTL 65 IS T ++ + + + VSA AGSGKT +LV+R+L +++ + Sbjct: 2 GISWTDEQKSVINSRHGNLLVSAAAGSGKTAVLVERILEMVMGVDADGNKAEEKIDIDEV 61 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T+AAAA+M ++ + + + P + K LL Sbjct: 62 LVVTFTRAAAAQMKEKIADKLEQAAE---------------DHPEDEHIVKQLSLLPRA- 105 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 + TI +FC I++ + I S F IAD + + + L + + Sbjct: 106 ------DIMTIDSFCLGIVKDYFQMIGIDSSFDIADNAEMDLIKNDILDEVLEQKYQEAS 159 Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 +E +DE I L+ I + Y + I ++ Sbjct: 160 DEFIGLVDSFARKESDEKIRELVYQIYRVASG---------YPKPERWINEA 202 >gi|213021539|ref|ZP_03335986.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 567 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|294792591|ref|ZP_06757738.1| ATP-dependent nuclease subunit A [Veillonella sp. 6_1_27] gi|294456490|gb|EFG24853.1| ATP-dependent nuclease subunit A [Veillonella sp. 6_1_27] Length = 1251 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 100/232 (43%), Gaps = 37/232 (15%) Query: 16 LISQTKSEQLLASDPTRS------AWVSANAGSGKTHILVQRVLRLLLANAHP---STLL 66 + T ++ P S V+A AGSGKT +LV+R++ L +P L+ Sbjct: 2 GVKWTPEQESAIIAPKDSSLDNQTLLVAAAAGSGKTAVLVERIITRLKDMYNPLSVQELM 61 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T TKAAA EMS R+ + +D++ ++ + + +LL + Sbjct: 62 VVTFTKAAAQEMSARIGLALAKAMESTDDV------------ALQTRLERQLNLLPSA-- 107 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + T+H+FC+ +++ + + +I I +E + L +E LA ++ + E Sbjct: 108 -----HISTLHSFCQWVIRSYFYKLDINPTARIGNEAEMALLQQE----VLADLLTKSYE 158 Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 E YE+ + +D+ + ++ I + L + S + K+L Sbjct: 159 EGLYNIYELADFFSDDKSDAGLTAKI-----MSLYNYAMSLANPDGWLRKAL 205 >gi|116494973|ref|YP_806707.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus casei ATCC 334] gi|122263609|sp|Q038V7|ADDA_LACC3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116105123|gb|ABJ70265.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactobacillus casei ATCC 334] Length = 1234 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 94/234 (40%), Gaps = 26/234 (11%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 + T S+Q + VSA+AGSGKT +LV+R+++ +L +A + +L +T T+AA Sbjct: 1 MTQFTTSQQAAITHDGHDVLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AEM ++ + LS E R L + K+ Sbjct: 61 TAEMRTKIQTALKKALTERRHELSGE----------------DRRHLANQIAMVNAAKIS 104 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE--ELKKAF 192 T+ AF I+Q + ++ F + +E + +++E L + ++E ++ Sbjct: 105 TLDAFSLQIVQTYYYVIDLDPGFRLLTDETERYMLQERVWDDLREQLYASDEAPAFEQLT 164 Query: 193 YEILEISNDEDIETLISDIISNRTAL---KLIFFFFSYLW-RRKI---IEKSLW 239 +D ++ L+ ++I A K + + K + +W Sbjct: 165 ANFSGDRDDSGLQDLMFELIRQAGATTDPKAYLEGLATPYAPEKWEATFSQQIW 218 >gi|239631427|ref|ZP_04674458.1| DNA helicase/exodeoxyribonuclease V [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525892|gb|EEQ64893.1| DNA helicase/exodeoxyribonuclease V [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 1234 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 94/234 (40%), Gaps = 26/234 (11%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 + T S+Q + VSA+AGSGKT +LV+R+++ +L +A + +L +T T+AA Sbjct: 1 MTQFTTSQQAAITHDGHDVLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AEM ++ + LS E R L + K+ Sbjct: 61 TAEMRTKIQTALKKALTERRHELSGE----------------DRRHLANQIAMVNAAKIS 104 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE--ELKKAF 192 T+ AF I+Q + ++ F + +E + +++E L + ++E ++ Sbjct: 105 TLDAFSLQIVQTYYYVIDLDPGFRLLTDETERYMLQERVWDDLREQLYASDEAPAFEQLT 164 Query: 193 YEILEISNDEDIETLISDIISNRTAL---KLIFFFFSYLW-RRKI---IEKSLW 239 +D ++ L+ ++I A K + + K + +W Sbjct: 165 ANFSGDRDDSGLQDLMFELIRQAGATTDPKAYLEGLATPYAPEKWEATFSQQIW 218 >gi|82546164|ref|YP_410111.1| DNA-dependent helicase II [Shigella boydii Sb227] gi|81247575|gb|ABB68283.1| DNA-dependent ATPase I and helicase II [Shigella boydii Sb227] gi|320185474|gb|EFW60243.1| ATP-dependent DNA helicase UvrD/PcrA [Shigella flexneri CDC 796-83] gi|332089046|gb|EGI94157.1| DNA helicase II [Shigella boydii 3594-74] Length = 720 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCLPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|227535023|ref|ZP_03965072.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|301066540|ref|YP_003788563.1| ATP-dependent exoDNAse [Lactobacillus casei str. Zhang] gi|227187338|gb|EEI67405.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|300438947|gb|ADK18713.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus casei str. Zhang] Length = 1234 Score = 151 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 94/234 (40%), Gaps = 26/234 (11%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 + T S+Q + VSA+AGSGKT +LV+R+++ +L +A + +L +T T+AA Sbjct: 1 MTQFTTSQQAAITHDGHDVLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AEM ++ + LS E R L + K+ Sbjct: 61 TAEMRTKIQTALKKALTERRHELSGE----------------DRRHLANQIAMVNAAKIS 104 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE--ELKKAF 192 T+ AF I+Q + ++ F + +E + +++E L + ++E ++ Sbjct: 105 TLDAFSLQIVQTYYYVIDLDPGFRLLTDETERYMLQERVWDDLREQLYASDEAPAFEQLT 164 Query: 193 YEILEISNDEDIETLISDIISNRTAL---KLIFFFFSYLW-RRKI---IEKSLW 239 +D ++ L+ ++I A K + + K + +W Sbjct: 165 ANFSGDRDDSGLQDLMFELIRQAGATTDPKAYLEGLATPYAPEKWEATFSQQIW 218 >gi|284048669|ref|YP_003399008.1| Exodeoxyribonuclease V [Acidaminococcus fermentans DSM 20731] gi|283952890|gb|ADB47693.1| Exodeoxyribonuclease V [Acidaminococcus fermentans DSM 20731] Length = 1116 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 48/200 (24%), Positives = 89/200 (44%), Gaps = 24/200 (12%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 + S T +Q S R+ VSA AGSGKT +LV+R L++L A +L +T T+ A Sbjct: 1 MASFTPQQQEAISTLDRNVSVSAGAGSGKTRVLVERFLKILQERKATAQEILAITFTRKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV + I + E + L+ + Sbjct: 61 AREMRERVQKGILDRLGAAAEPEE-------------------KAYWQEQLQLADRAPIT 101 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TI +FC ++++ P+EA + +FA+ +E Q + EE ++ + + + +L Sbjct: 102 TIDSFCSQVLRENPVEAGLDPNFAVKEEYQIRAFREETAQAFVQKEIQQQDGDLAA---- 157 Query: 195 ILEISNDEDIETLISDIISN 214 +L++ + + ++ +I + Sbjct: 158 LLDLYPADRLARILVALIDD 177 >gi|191638484|ref|YP_001987650.1| ATP-dependent nuclease, subunit A [Lactobacillus casei BL23] gi|251764527|sp|B3WEJ1|ADDA_LACCB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|190712786|emb|CAQ66792.1| ATP-dependent nuclease, subunit A [Lactobacillus casei BL23] gi|327382519|gb|AEA53995.1| ATP-dependent nuclease subunit A [Lactobacillus casei LC2W] gi|327385716|gb|AEA57190.1| ATP-dependent nuclease subunit A [Lactobacillus casei BD-II] Length = 1234 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 94/234 (40%), Gaps = 26/234 (11%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 + T S+Q + VSA+AGSGKT +LV+R+++ +L +A + +L +T T+AA Sbjct: 1 MTQFTTSQQAAITHDGHDVLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AEM ++ + LS E R L + K+ Sbjct: 61 TAEMRTKIQTALKKALTERRHELSGE----------------DRRHLANQIAMVNAAKIS 104 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE--ELKKAF 192 T+ AF I+Q + ++ F + +E + +++E L + ++E ++ Sbjct: 105 TLDAFSLQIVQTYYYVIDLDPGFRLLTDETERYMLQERVWDDLREQLYASDEAPAFEQLT 164 Query: 193 YEILEISNDEDIETLISDIISNRTAL---KLIFFFFSYLW-RRKI---IEKSLW 239 +D ++ L+ ++I A K + + K + +W Sbjct: 165 ANFSGDRDDSGLQDLMFELIRQAGATTDPKAYLEGLATPYAPEKWEATFSQQIW 218 >gi|170769888|ref|ZP_02904341.1| DNA helicase II [Escherichia albertii TW07627] gi|170121326|gb|EDS90257.1| DNA helicase II [Escherichia albertii TW07627] Length = 720 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNILVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F + D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQLLDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|327441306|dbj|BAK17671.1| ATP-dependent exoDNAse beta subunit [Solibacillus silvestris StLB046] Length = 1239 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 84/207 (40%), Gaps = 32/207 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTK 72 + T + VSA AGSGKT +L++R+++ +L LL +T T Sbjct: 10 VQWTDVQWKAIYASGHDILVSAAAGSGKTAVLIERLIQKMLAPEDKRIDVDELLVVTFTN 69 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 A+AAEM +R+ E + K + PN + + LL + Sbjct: 70 ASAAEMRNRMAEAL---------------EKELAQNPNNQFLRRQLSLL-------NKAQ 107 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN------NE 186 + T+H+FC +I +++ ++ F +A E++ L ++ L + E Sbjct: 108 ISTLHSFCLSICREYAYTIDLDPGFRLASTEEASLLQDDVLMDVLEKAYRGDMEALFTKE 167 Query: 187 ELKKAFYEILEISNDEDIETLISDIIS 213 EL +D+ IE L+ ++ Sbjct: 168 ELYTLIDSFASDRSDQAIELLLQEMYK 194 >gi|315924912|ref|ZP_07921129.1| ATP-dependent deoxyribonuclease subunit A [Pseudoramibacter alactolyticus ATCC 23263] gi|315621811|gb|EFV01775.1| ATP-dependent deoxyribonuclease subunit A [Pseudoramibacter alactolyticus ATCC 23263] Length = 1178 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 53/200 (26%), Positives = 94/200 (47%), Gaps = 24/200 (12%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAA 75 + T ++ S ++ VSA AGSGKT +L++R+ RL++ +LL LT T+AAA Sbjct: 1 MQWTTEQEAAISSRHQNLLVSAAAGSGKTALLIERIRRLVVDEDVDVDSLLVLTFTRAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ ++ + + R L L G ++T Sbjct: 61 GEMRERLSTALSEALMACTD-------------------ADKRRRLSNQLRRLSGASIET 101 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IHAFC ++++F E + + I D+ + +L +EA + L+ E+ + AF ++ Sbjct: 102 IHAFCGDLVREFFQEVDADPNDRIGDDVELDRLQDEAMTAVFEERYLEIPEDGETAFSKL 161 Query: 196 LEIS----NDEDIETLISDI 211 ++ DED+ TL+ D+ Sbjct: 162 VDAYGDSKGDEDLRTLVLDL 181 >gi|307243582|ref|ZP_07525727.1| ATP-dependent nuclease subunit A [Peptostreptococcus stomatis DSM 17678] gi|306493023|gb|EFM65031.1| ATP-dependent nuclease subunit A [Peptostreptococcus stomatis DSM 17678] Length = 1310 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 34/226 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 TK + + + V+A AGSGKT +L++R++ L+ P LL +T TKAAA Sbjct: 5 WTKEQTSVIDHRGSNLLVAAAAGSGKTAVLIERIISLVTDKEKPIDIDKLLVVTFTKAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + E + + + + + T Sbjct: 65 NEMRERVGLALEDALDKDPENDHLQRQLLLLNRAD----------------------ITT 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++++ ++ + D + + + ++ + + + NEE F + Sbjct: 103 IDSFCGRVVRENFHATDLDPNVRTGDPAEIEMIKKDVIEDLFEDLYNEKNEE----FLSL 158 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 ++I + + + + D+I L L F S + ++ + Sbjct: 159 VDIYSARNNDRPLMDLI-----LMLNTFIDSSAYPEDWLDDNAEKF 199 >gi|313894359|ref|ZP_07827924.1| ATP-dependent nuclease subunit A [Veillonella sp. oral taxon 158 str. F0412] gi|313441183|gb|EFR59610.1| ATP-dependent nuclease subunit A [Veillonella sp. oral taxon 158 str. F0412] Length = 1304 Score = 151 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 99/232 (42%), Gaps = 37/232 (15%) Query: 16 LISQTKSEQLLASDPTRS------AWVSANAGSGKTHILVQRVLRLLLANAHP---STLL 66 + T ++ P S V+A AGSGKT +LV+R++ L +P L+ Sbjct: 2 GVKWTPEQESAIIAPKDSSLANQTLLVAAAAGSGKTAVLVERIITRLKDIDNPLSVQELM 61 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T TKAAA EMS R+ + +++ E + + +LL + Sbjct: 62 VVTFTKAAAQEMSARIGLALAKAMESTEDAAMQE------------RLERQLNLLPSA-- 107 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + T+H+FC+ +++ + + +I I +E + L +E LA +++ + E Sbjct: 108 -----HISTLHSFCQWVIRSYFYKLDINPTARIGNEAEMALLQQE----VLADLLIKSYE 158 Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 E YE+ + +D+ + ++ I + L + S + K+L Sbjct: 159 EGLYNIYELADFFSDDKSDAGLTAKI-----MLLYNYAMSLANPDGWLRKAL 205 >gi|321159776|pdb|3LFU|A Chain A, Crystal Structure Of E. Coli Uvrd Length = 647 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|218560877|ref|YP_002393790.1| DNA-dependent helicase II [Escherichia coli S88] gi|218367646|emb|CAR05431.1| DNA-dependent ATPase I and helicase II [Escherichia coli S88] Length = 720 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMT 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|37528453|ref|NP_931798.1| DNA-dependent helicase II [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787891|emb|CAE17008.1| DNA helicase II [Photorhabdus luminescens subsp. laumondii TTO1] Length = 720 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ++ ++ + E + A P + V A AGSGKT +LV R+ LL + A P +++ Sbjct: 2 DVSYLLESLNDKQREAVAA--PRTNMLVLAGAGSGKTRVLVHRIAWLLSVEKASPFSVMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIENLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+AN+ F I D E +L+ K + ++ LD+ + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQNRLL----KRIIKAMNLDDKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PARQGMWYINGKKDEGLR 155 >gi|154498367|ref|ZP_02036745.1| hypothetical protein BACCAP_02356 [Bacteroides capillosus ATCC 29799] gi|150272678|gb|EDM99856.1| hypothetical protein BACCAP_02356 [Bacteroides capillosus ATCC 29799] Length = 1206 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 92/221 (41%), Gaps = 34/221 (15%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78 T+ + + ++ + VSA AGSGKT +LV+R+L + L +T+TKAAAAE+ Sbjct: 6 TEQQAAVVNNRGGALLVSAAAGSGKTRVLVERLLGRVEHEGLDIDRFLVITYTKAAAAEL 65 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R++E E+++ + P + + + L+ ++ T+H+ Sbjct: 66 RSRIVE---------------ELSQRLARNPTDRHLRRQQTLVYKA-------QISTVHS 103 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD--NNEELKKAFYEIL 196 FC ++++ ++ F + DE ++ L+ A + D + + K + Sbjct: 104 FCAQLLRECGHMLDVNPDFRLCDEGEAGVLMLRALDEVMDRRYEDITPDSDFAKLVDTMS 163 Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 +D + ++ DI S+ +++ Sbjct: 164 AGRDDSRLMQIVLDIRGR---------VQSHPDPAAWLDQQ 195 >gi|317011772|gb|ADU85519.1| putative recombination protein RecB [Helicobacter pylori SouthAfrica7] Length = 949 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 96/204 (47%), Gaps = 11/204 (5%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 91 HLSDEILSAEITKIQGKKPNKSDM------SKARHLLITILETPGGLKVQTIHAFCEAIM 144 + E + I + K ++ A+ + L +K+ TI AF ++I+ Sbjct: 65 KENSENEKEKSQNILKELEEKYNLNPSLVQDNAKKIYQRFLN--AEIKISTIDAFFQSIL 122 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204 ++F ++++F + ++ ++ ++ +S L+++ + EEL + L SN Sbjct: 123 RKFCWFVGLSANFEVNEDTEAH--QQQLNESFLSALNSEQLEELSVFIAQCLS-SNSYGS 179 Query: 205 ETLISDIISNRTALKLIFFFFSYL 228 ++++ + + L L F L Sbjct: 180 DSVLEQLHFLKNKLYLFDFNQQEL 203 >gi|332084670|gb|EGI89858.1| DNA helicase II [Shigella boydii 5216-82] Length = 720 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++ + Sbjct: 60 VTFTNKAAAEMRHRIGLLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|304410803|ref|ZP_07392420.1| DNA helicase II [Shewanella baltica OS183] gi|307305026|ref|ZP_07584776.1| DNA helicase II [Shewanella baltica BA175] gi|304350700|gb|EFM15101.1| DNA helicase II [Shewanella baltica OS183] gi|306912428|gb|EFN42852.1| DNA helicase II [Shewanella baltica BA175] Length = 722 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 73/198 (36%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L Sbjct: 2 DVSSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV ++ Sbjct: 60 VTFTNKAAAEMRERVEKVAGT--------------------------------------N 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + + T H +++ +A + F I D + +LI K L S+ LD + Sbjct: 82 MGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQVRLI----KRILKSLNLDEKQY 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D+ + Sbjct: 138 PPRQAQGYINGKKDQGLR 155 >gi|319427815|gb|ADV55889.1| DNA helicase II [Shewanella putrefaciens 200] Length = 722 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 84/231 (36%), Gaps = 48/231 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L Sbjct: 2 DVSSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV ++ Sbjct: 60 VTFTNKAAAEMRERVEKVAGT--------------------------------------N 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + + T H +++ +A + F I D + +LI K L S+ LD + Sbjct: 82 MGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQVRLI----KRILKSLNLDEKQY 137 Query: 188 LKKAFYEILEISNDEDIETLISDIIS---NRTALKLIFFFFSYLWRRKIIE 235 + + D+ + D I + LK+ + R +++ Sbjct: 138 PPRQAQGYINGKKDQGLRPKHIDAIGFPIEQNLLKIYQVYQESCDRAGLVD 188 >gi|331702530|ref|YP_004399489.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus buchneri NRRL B-30929] gi|329129873|gb|AEB74426.1| ATP-dependent helicase/nuclease subunit A [Lactobacillus buchneri NRRL B-30929] Length = 1252 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 92/217 (42%), Gaps = 29/217 (13%) Query: 20 TKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 T + D P + VSA+AGSGKT +LV R++ ++ + LL +T T AAA E Sbjct: 6 TPDQLKAIKDRPAGNVLVSASAGSGKTRVLVDRIIDMVKNQHVDIDQLLVVTFTNAAAKE 65 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ + + + E + L+T ++ + T+ Sbjct: 66 MRQRLQAALREEFNQAAEAE--------------------KGRLLTQIQKVAVADITTMD 105 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 A+C+ ++ ++ I +F I ++ K+L+++ + + N+E+ +F + E Sbjct: 106 AYCQKLVGRYYYLLGIDPNFRILADDTEKQLLKDQVWGAVREDLYGNDEDG--SFARLTE 163 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +++ + ++D+I +L F + Sbjct: 164 NFSNDRSDDGLADLI-----YRLDEFANVTDDPDGWL 195 >gi|241895871|ref|ZP_04783167.1| ATP-dependent deoxyribonuclease, subunit A [Weissella paramesenteroides ATCC 33313] gi|241870914|gb|EER74665.1| ATP-dependent deoxyribonuclease, subunit A [Weissella paramesenteroides ATCC 33313] Length = 1269 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 93/220 (42%), Gaps = 28/220 (12%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + T S+ R+ VSA+AGSGKT +LV+RV++ LLA + + L +T T+AAA+ Sbjct: 1 MKFTDSQSAAIKTKGRNVLVSASAGSGKTRVLVERVMQRLLAGENVNEFLIVTFTEAAAS 60 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ + + +E+ G+ R L+ L + T+ Sbjct: 61 EMKERL-----------EGAIRSELIASVGE---------QRQHLLKQLRLLNIANISTL 100 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI- 195 HAF +++Q+ ++ F + D+ + ++ E + L ++NE+ AF Sbjct: 101 HAFALRLIEQYHYTIDLDPQFRLMDDAERTLVMLEVYNTLLEEQYANDNEQ--HAFATFA 158 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 + + + + + L F + ++ Sbjct: 159 AQFTTSTTDDRALQEAT-----FSLYDFATARPDAVNWLD 193 >gi|167462209|ref|ZP_02327298.1| ATP-dependent deoxyribonuclease (subunit A) [Paenibacillus larvae subsp. larvae BRL-230010] Length = 1391 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 98/222 (44%), Gaps = 32/222 (14%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAA 74 + T + + ++ ++A AGSGKT +LV+R++R + P LL T TKAA Sbjct: 26 TWTDDQWNAITGKGKNMLIAAAAGSGKTAVLVERIIRRISDEREPVDVDRLLVATFTKAA 85 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM R+ E + K K+P + + L+ G + Sbjct: 86 ASEMKERIREAL---------------EKELLKRPQSPHLRRQLALM-------GRANIT 123 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+H+FC ++++ ++ F I+ E +++ + ++ + + ++ E+ F++ Sbjct: 124 TLHSFCLDVIRRHFASIHLDPVFRISGETETELMRQDVLEELMEEYYENSAED--SPFWK 181 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +++ E ++ + ++ KL S+ W +++ Sbjct: 182 LVDSFGGEHSDSGLVRLVQ-----KLYDESRSHPWPDYWLKE 218 >gi|120597399|ref|YP_961973.1| DNA-dependent helicase II [Shewanella sp. W3-18-1] gi|146294460|ref|YP_001184884.1| DNA-dependent helicase II [Shewanella putrefaciens CN-32] gi|120557492|gb|ABM23419.1| ATP-dependent DNA helicase UvrD [Shewanella sp. W3-18-1] gi|145566150|gb|ABP77085.1| ATP-dependent DNA helicase UvrD [Shewanella putrefaciens CN-32] Length = 722 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 84/231 (36%), Gaps = 48/231 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L Sbjct: 2 DVSSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV ++ Sbjct: 60 VTFTNKAAAEMRERVEKVAGT--------------------------------------N 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + + T H +++ +A + F I D + +LI K L S+ LD + Sbjct: 82 MGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQVRLI----KRILKSLNLDEKQY 137 Query: 188 LKKAFYEILEISNDEDIETLISDIIS---NRTALKLIFFFFSYLWRRKIIE 235 + + D+ + D I + LK+ + R +++ Sbjct: 138 PPRQAQGYINGKKDQGLRPKHIDAIGFPIEQNLLKIYQVYQESCDRAGLVD 188 >gi|227431965|ref|ZP_03913985.1| DNA helicase/exodeoxyribonuclease V, subunit A [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352250|gb|EEJ42456.1| DNA helicase/exodeoxyribonuclease V, subunit A [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 1230 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 86/219 (39%), Gaps = 27/219 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 TK++Q + + V+A+AGSGKT +L++R+++ +L+ L +T T AAA EM Sbjct: 5 FTKNQQRAIEEKGHNILVAASAGSGKTTVLIERLIQKILSGVSVEKFLIVTFTNAAAKEM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ I ++DE + L L + TI A Sbjct: 65 RERLEVAIEKRLKVADES--------------------QKRFLQEQLLILPAANISTIDA 104 Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 + I++ + + F + D + K L ++ LA +NN ++ + Sbjct: 105 YALRIIEIYYHVIGLDPQFRLLSDTAERKLLQQDVLADVLADFYDENNIHHEQFLTLVNN 164 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 N + L + LKL F + + +EK Sbjct: 165 FGNPNQDDQL------QKIILKLSDFAEARADGNEWLEK 197 >gi|126172693|ref|YP_001048842.1| DNA-dependent helicase II [Shewanella baltica OS155] gi|217974967|ref|YP_002359718.1| DNA-dependent helicase II [Shewanella baltica OS223] gi|125995898|gb|ABN59973.1| ATP-dependent DNA helicase UvrD [Shewanella baltica OS155] gi|217500102|gb|ACK48295.1| DNA helicase II [Shewanella baltica OS223] Length = 722 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 73/198 (36%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L Sbjct: 2 DVSSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV ++ Sbjct: 60 VTFTNKAAAEMRERVEKVAGT--------------------------------------N 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + + T H +++ +A + F I D + +LI K L S+ LD + Sbjct: 82 MGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQVRLI----KRILKSLNLDEKQY 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D+ + Sbjct: 138 PPRQAQGYINGKKDQGLR 155 >gi|160877119|ref|YP_001556435.1| DNA-dependent helicase II [Shewanella baltica OS195] gi|160862641|gb|ABX51175.1| DNA helicase II [Shewanella baltica OS195] gi|315269321|gb|ADT96174.1| DNA helicase II [Shewanella baltica OS678] Length = 722 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 73/198 (36%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L Sbjct: 2 DVSSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV ++ Sbjct: 60 VTFTNKAAAEMRERVEKVAGT--------------------------------------N 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + + T H +++ +A + F I D + +LI K L S+ LD + Sbjct: 82 MGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQVRLI----KRILKSLNLDEKQY 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D+ + Sbjct: 138 PPRQAQGYINGKKDQGLR 155 >gi|153002398|ref|YP_001368079.1| DNA-dependent helicase II [Shewanella baltica OS185] gi|151367016|gb|ABS10016.1| DNA helicase II [Shewanella baltica OS185] Length = 722 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 73/198 (36%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L Sbjct: 2 DVSSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV ++ Sbjct: 60 VTFTNKAAAEMRERVEKVAGT--------------------------------------N 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + + T H +++ +A + F I D + +LI K L S+ LD + Sbjct: 82 MGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQVRLI----KRILKSLNLDEKQY 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D+ + Sbjct: 138 PPRQAQGYINGKKDQGLR 155 >gi|85060320|ref|YP_456022.1| DNA-dependent helicase II [Sodalis glossinidius str. 'morsitans'] gi|84780840|dbj|BAE75617.1| DNA helicase II [Sodalis glossinidius str. 'morsitans'] Length = 720 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ ++ ++ + E ++A P + V A AGSGKT +LV R+ LL + N P +++ Sbjct: 2 DVSDLLNSLNDKQREAVVA--PRGNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSVMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++ + Sbjct: 60 VTFTNKAAAEMRHRIEHLVGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ +AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHQDANLPQDFQILDSEDQLRLL----KRLIRAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D+ + Sbjct: 138 PPRQAMWYIGGKKDDGLR 155 >gi|199598402|ref|ZP_03211821.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus rhamnosus HN001] gi|258508491|ref|YP_003171242.1| ATP-dependent nuclease subunit A [Lactobacillus rhamnosus GG] gi|199590721|gb|EDY98808.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Lactobacillus rhamnosus HN001] gi|257148418|emb|CAR87391.1| ATP-dependent nuclease, subunit A [Lactobacillus rhamnosus GG] gi|259649801|dbj|BAI41963.1| ATP-dependent exonuclease subunit A [Lactobacillus rhamnosus GG] Length = 1236 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 87/202 (43%), Gaps = 19/202 (9%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 + T S+Q + VSA+AGSGKT +LV+R+++ +L +A + +L +T T+AA Sbjct: 1 MTQFTPSQQAAINHHGHDMLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 +EM ++ + L+AE R L + K+ Sbjct: 61 TSEMRTKIQTALKQTLTAKRHELNAE----------------DRRHLANQIAMVNAAKIS 104 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE--ELKKAF 192 T+ AF I+Q + ++ F + +E + +++E + L +E E ++ Sbjct: 105 TLDAFSLQIVQTYYYVIDLDPGFRLLTDETERYMLQEQVWNDLREQFYAGDEAAEFEQLT 164 Query: 193 YEILEISNDEDIETLISDIISN 214 +D ++ L+ +++ Sbjct: 165 ANFSGDRDDSGLQDLMFELMRQ 186 >gi|317405925|gb|EFV86204.1| nuclease/helicase [Achromobacter xylosoxidans C54] Length = 1190 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 13/210 (6%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 DP RS V A AGSGKT +L R+L LL P ++ +T T+ AA+EM RVL + Sbjct: 19 DPARSFLVQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAASEMHARVLSKLRR 78 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 E + + ++ +++ +L+ P L ++TI +FC +++ P Sbjct: 79 GLDAPPEA----AHERRSWDLARAALARNDAQQWHLLDHPARLAIRTIDSFCAGLVRSMP 134 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208 + + I D ++ E A ++TL + D+ + ++ + + + + I Sbjct: 135 WLSELGGMPEITD--DARAHYEAAARATLD--LADDYDAVRILLQHM--DVDVQAAKDAI 188 Query: 209 SDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +D++ R + S R+ +E++L Sbjct: 189 ADMLGQRDQWLPLLRHGSD---REALEETL 215 >gi|221134097|ref|ZP_03560402.1| DNA helicase II [Glaciecola sp. HTCC2999] Length = 722 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 45/220 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + + + A P + + A AGSGKT +LV R+ L+ + N P ++L Sbjct: 2 DVSRLLDGLNDKQRQAVAA--PAQDMLILAGAGSGKTRVLVHRIAWLMEVENLSPFSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ ++ ++ Sbjct: 60 VTFTNKAAREMRGRIEQLKG--------------------------------------QS 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + + T H +++ EAN+ +F I D + +LI+ KS LD + Sbjct: 82 LHHMWIGTFHGLAHRLLRAHYAEANLPENFTILDSDDQHRLIKRIIKSM----NLDEKDW 137 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 K + + DE + D + K+ + +Y Sbjct: 138 PAKQSQWYINGNKDEGLRPKDIDTYGDANQQKMRDIYQAY 177 >gi|310826445|ref|YP_003958802.1| recombination helicase AddA [Eubacterium limosum KIST612] gi|308738179|gb|ADO35839.1| recombination helicase AddA [Eubacterium limosum KIST612] Length = 1190 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 27/223 (12%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 + T+ + ++ VSA AGSGKT +L++R+ R+++ LL LT T++AA Sbjct: 1 MRWTEDQLRAIETRKKNLLVSAAAGSGKTALLIERIRRIVVEEKTSVDALLVLTFTRSAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + A D I +I G + T Sbjct: 61 AEMKERLSAALMAELEKEDVDSDFVIAQIS---------------------RLGAASIST 99 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +HAFC +++ + E I F + +E + +++EA + + + + F + Sbjct: 100 LHAFCSRLVRDYFQEGGIDPEFKLGNETELSIMLQEALEDLFEEKYQEIPADGETPFSRL 159 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +++ + + ++ N +F + K +SL Sbjct: 160 VDMFTGNRDDRELKSLVEN-----FHYFLVTQPDSEKWCARSL 197 >gi|306821093|ref|ZP_07454709.1| ATP-dependent nuclease subunit A [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550786|gb|EFM38761.1| ATP-dependent nuclease subunit A [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 1149 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 32/226 (14%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 ++ + T +Q ++ VSA AGSGKT +L QR++ L+ + +++L LT T Sbjct: 1 MNKTNWTPKQQEAIDTRNKNILVSAAAGSGKTAVLTQRIIDLITKEDVDITSMLVLTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA EMS R+ + + + + N + K ++ G Sbjct: 61 AAANEMSARIQKKMYEY---------------LEENRNNKHIKKQISMI-------SGAS 98 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T+H+FC I+++ ++I +F IA+ + +E+ + +E+ F Sbjct: 99 ISTMHSFCIDIIRENFNFSDIDPNFVIANAATVAMIKQESISEIFEERYENQDED----F 154 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 + +I + ++ + +II K+ F S +++ + Sbjct: 155 LLLTDIYSSRYDDSKLINII-----YKIYNFIQSKKEPMDWLKEQV 195 >gi|294637961|ref|ZP_06716228.1| DNA helicase II [Edwardsiella tarda ATCC 23685] gi|291088893|gb|EFE21454.1| DNA helicase II [Edwardsiella tarda ATCC 23685] Length = 720 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 79/198 (39%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ ++ ++ + E + A P + V A AGSGKT +LV R+ LL + P +++ Sbjct: 2 DVSDLLESLNDRQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLAVEQCSPFSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +I + Sbjct: 60 VTFTNKAAAEMRHRIEALIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ L+A + F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D+ + Sbjct: 138 PARQGMWYINGKKDDGLR 155 >gi|116618575|ref|YP_818946.1| DNA helicase/exodeoxyribonuclease V, subunit A [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122271225|sp|Q03W49|ADDA_LEUMM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116097422|gb|ABJ62573.1| DNA helicase/exodeoxyribonuclease V, subunit A [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 1230 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 86/219 (39%), Gaps = 27/219 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 TK++Q + + V+A+AGSGKT +L++R+++ +L+ L +T T AAA EM Sbjct: 5 FTKNQQRAIEEKGHNILVAASAGSGKTTVLIERLIQKILSGVSVEKFLIVTFTNAAAKEM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ I ++DE + L L + TI A Sbjct: 65 RERLEVAIEKRLKVADES--------------------QKRFLQEQLLILPAANISTIDA 104 Query: 139 FCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 + I++ + + F + D + K L ++ LA +NN ++ + Sbjct: 105 YALRIIEMYYHIIGLDPQFRLLSDTAERKLLQQDVLTDVLADFYDENNIHHEQFLTLVNN 164 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 N + L + LKL F + + +EK Sbjct: 165 FGNPNQDDQL------QKIILKLSDFAEARADGNEWLEK 197 >gi|24372062|ref|NP_716104.1| DNA-dependent helicase II [Shewanella oneidensis MR-1] gi|24345940|gb|AAN53549.1|AE015495_3 DNA helicase II [Shewanella oneidensis MR-1] Length = 722 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 73/198 (36%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L Sbjct: 2 DVSSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV ++ Sbjct: 60 VTFTNKAAAEMRERVEKVAGT--------------------------------------N 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + + T H +++ +A + F I D + +L+ K L S+ LD + Sbjct: 82 MGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQLRLL----KRILKSLNLDEKQY 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D+ + Sbjct: 138 PPRQAQGYINGKKDQGLR 155 >gi|229552293|ref|ZP_04441018.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus rhamnosus LMS2-1] gi|258539702|ref|YP_003174201.1| ATP-dependent nuclease subunit A [Lactobacillus rhamnosus Lc 705] gi|229314365|gb|EEN80338.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus rhamnosus LMS2-1] gi|257151378|emb|CAR90350.1| ATP-dependent nuclease, subunit A [Lactobacillus rhamnosus Lc 705] Length = 1236 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 19/202 (9%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 + T S+Q S VSA+AGSGKT +LV+R+++ +L +A + +L +T T+AA Sbjct: 1 MTQFTPSQQAAISHHGHDMLVSASAGSGKTTVLVERIIQKILKQHADITRMLIVTFTRAA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 +EM ++ + L+AE R L + K+ Sbjct: 61 TSEMRTKIQTALKQTLTAKRHELNAE----------------DRRHLANQIAMVNAAKIS 104 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE--ELKKAF 192 T+ AF I+Q + ++ F + +E + +++E + L +E E ++ Sbjct: 105 TLDAFSLQIVQTYYYVIDLDPGFRLLTDETERYMLQEQVWNDLREQFYAGDEAAEFEQLT 164 Query: 193 YEILEISNDEDIETLISDIISN 214 +D ++ L+ +++ Sbjct: 165 ANFSGDRDDSGLQDLMFELMRQ 186 >gi|99035028|ref|ZP_01314824.1| hypothetical protein Wendoof_01000338 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 438 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 67/216 (31%), Positives = 105/216 (48%), Gaps = 38/216 (17%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 A +P S WV+A+AG+GKT IL+ RVLRLLL N +LCLT T AAA EM +R+ I+ Sbjct: 5 AINPNFSVWVNASAGTGKTKILIDRVLRLLLENK--RNILCLTFTNAAANEMENRIHSIL 62 Query: 87 TAWSHLSDEILSAEITKIQ-------------------------GKKPNKSDMSKARHLL 121 + W+ SD +L+A++ ++ G + NK +++AR L Sbjct: 63 SKWAICSDSVLAADLEQLDFFPMSSQCVTLGSQHPYLSSQCVTLGSRKNKDYLTRARRLF 122 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 + GL +QTIHAFC + FP+EA I + + + K+L L Sbjct: 123 SELENL--GLTIQTIHAFCYKSISSFPIEAGIAPNCTL---SECKELHSIIFNKVL---- 173 Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDIISNRTA 217 +NE ++ I ++ + L+ + R+A Sbjct: 174 --HNETVQDDINLIATEIDENKLRDLLYTLCVKRSA 207 >gi|113968817|ref|YP_732610.1| DNA-dependent helicase II [Shewanella sp. MR-4] gi|113883501|gb|ABI37553.1| ATP-dependent DNA helicase UvrD [Shewanella sp. MR-4] Length = 722 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 73/198 (36%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L Sbjct: 2 DVSSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV ++ Sbjct: 60 VTFTNKAAAEMRERVEKVAGT--------------------------------------N 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + + T H +++ +A + F I D + +L+ K L S+ LD + Sbjct: 82 MGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQVRLL----KRILKSLNLDEKQY 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D+ + Sbjct: 138 PPRQAQAYINGKKDQGLR 155 >gi|269958568|ref|YP_003328355.1| putative exodeoxyribonuclease V [Anaplasma centrale str. Israel] gi|269848397|gb|ACZ49041.1| putative exodeoxyribonuclease V [Anaplasma centrale str. Israel] Length = 867 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 57/198 (28%), Positives = 103/198 (52%), Gaps = 14/198 (7%) Query: 18 SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 S+ +Q A+DP R W+SA+AG+GKT +LV RV+RL+++ +LCLT T AA Sbjct: 4 SKLDIQQQSATDPEREFVWISASAGTGKTKLLVHRVIRLMVSGQ--RNILCLTFTNAAVH 61 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV I+ W L E L + ++ ++ + +AR L + P LK+QT+ Sbjct: 62 EIRERVYGIVAEWLALPKEELVNRLREVCYQQIDHQHYVRARRLF---FDVPSILKIQTV 118 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC +++ FP E +++ F + + + E+ A ++ ++ + + EI Sbjct: 119 HSFCHSLVASFPAETGVSADFEMRE-------LSESYPKIFAQLLREDRS-IDRDLSEIS 170 Query: 197 EISNDEDIETLISDIISN 214 ++ + L+ II+ Sbjct: 171 VELAEDTLYNLVYQIINK 188 >gi|116873698|ref|YP_850479.1| ATP-dependent nuclease, subunit A [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466555|sp|A0AL18|ADDA_LISW6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116742576|emb|CAK21700.1| ATP-dependent nuclease, subunit A [Listeria welshimeri serovar 6b str. SLCC5334] Length = 1235 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 95/223 (42%), Gaps = 33/223 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75 T + + V+A AGSGKT +LV R++ L+ N + LL +T T A+A Sbjct: 14 WTDDQWKAIQANGNNILVAAAAGSGKTAVLVTRIIEKLVDETGNLNVDELLIVTFTNASA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM +R+ + + + + P+ S + K LL + T Sbjct: 74 AEMKYRIGKSL---------------EEALSQNPDSSHLKKQVALL-------NYASIST 111 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC I+++ EA+I +F + + +S + +E + L N E AF+ + Sbjct: 112 LHSFCLEIIRKHYFEADIDPNFRLIEPIESSMIRDEVLEELLEKEYSIANNE---AFFHL 168 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +E + + + +IS KL F + +E+ + Sbjct: 169 VESFTGDRTDAELHMLIS-----KLYDFSRANPNPDLWLEQMV 206 >gi|117918924|ref|YP_868116.1| DNA-dependent helicase II [Shewanella sp. ANA-3] gi|117611256|gb|ABK46710.1| ATP-dependent DNA helicase UvrD [Shewanella sp. ANA-3] Length = 722 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 73/198 (36%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L Sbjct: 2 DVSSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV ++ Sbjct: 60 VTFTNKAAAEMRERVEKVAGT--------------------------------------N 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + + T H +++ +A + F I D + +L+ K L S+ LD + Sbjct: 82 MGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQVRLL----KRILKSLNLDEKQY 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D+ + Sbjct: 138 PPRQAQAYINGKKDQGLR 155 >gi|239995580|ref|ZP_04716104.1| DNA helicase II [Alteromonas macleodii ATCC 27126] Length = 723 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P +A V A AGSGKT +LV R+ L+ + N P ++L Sbjct: 2 DVSRLLDELNDKQREAVAA--PLSNALVLAGAGSGKTRVLVHRIAWLMEVENIAPFSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ ++ + Sbjct: 60 VTFTNKAAKEMRGRIESLMGR--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + + T H +++ EAN+ +F I D + +LI + L ++ LD Sbjct: 82 LHNMWIGTFHGLAHRLLRAHHAEANLPENFQIIDSDDQYRLI----RRILKAMNLDEKHW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + + DE + Sbjct: 138 APRQIQWYINGNKDEGLR 155 >gi|114564558|ref|YP_752072.1| DNA-dependent helicase II [Shewanella frigidimarina NCIMB 400] gi|114335851|gb|ABI73233.1| ATP-dependent DNA helicase UvrD [Shewanella frigidimarina NCIMB 400] Length = 727 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 75/198 (37%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +L R+ L+ + P ++L Sbjct: 2 DVSSLLDGLNDKQREAVGA--PLSNMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV +++ Sbjct: 60 VTFTNKAAAEMRERVEKVVGT--------------------------------------N 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + + T H +++ +AN+ F I D + +L+ K L S+ LD + Sbjct: 82 MGRMWIGTFHGLAHRLLRTHYQDANLPQSFQIIDSDDQLRLL----KRILKSLNLDEKQY 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D+ + Sbjct: 138 PPRQAQGYINGKKDQGLR 155 >gi|56417018|ref|YP_154092.1| hypothetical protein AM927 [Anaplasma marginale str. St. Maries] gi|56388250|gb|AAV86837.1| hypothetical protein AM927 [Anaplasma marginale str. St. Maries] Length = 867 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 57/198 (28%), Positives = 103/198 (52%), Gaps = 14/198 (7%) Query: 18 SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 S+ +Q A+DP R W+SA+AG+GKT +LV RV+RL+++ +LCLT T AA Sbjct: 4 SKLDIQQQSATDPEREFVWISASAGTGKTKLLVHRVIRLMVSGQ--RNILCLTFTNAAVH 61 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV I+ W L E L + ++ ++ + +AR L + P LK+QT+ Sbjct: 62 EIRERVYGIVAEWLALPKEELVNRLREVCYQQIDHQHYVRARRLF---FDVPSILKIQTV 118 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC +++ FP E +++ F + + + E+ A ++ ++ + + EI Sbjct: 119 HSFCHSLVASFPAETGVSADFEMRE-------LSESYPKIFAQLLREDRS-IDRDLSEIS 170 Query: 197 EISNDEDIETLISDIISN 214 ++ + L+ II+ Sbjct: 171 VELAEDTLYNLVYQIINK 188 >gi|332139606|ref|YP_004425344.1| DNA helicase II [Alteromonas macleodii str. 'Deep ecotype'] gi|327549628|gb|AEA96346.1| DNA helicase II [Alteromonas macleodii str. 'Deep ecotype'] Length = 723 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P +A V A AGSGKT +LV R+ L+ + N P ++L Sbjct: 2 DVSRLLDELNDKQREAVAA--PLSNALVLAGAGSGKTRVLVHRIAWLMEVENIAPFSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ ++ + Sbjct: 60 VTFTNKAAKEMRGRIESLMGR--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + + T H +++ EAN+ +F I D + +LI + L ++ LD Sbjct: 82 LHNMWIGTFHGLAHRLLRAHHAEANLPENFQIIDSDDQYRLI----RRILKAMNLDEKHW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + + DE + Sbjct: 138 APRQIQWYINGNKDEGLR 155 >gi|160946300|ref|ZP_02093509.1| hypothetical protein PEPMIC_00260 [Parvimonas micra ATCC 33270] gi|158447416|gb|EDP24411.1| hypothetical protein PEPMIC_00260 [Parvimonas micra ATCC 33270] Length = 1261 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 25/190 (13%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 + TK ++ + + VSA AGSGKT +L++R++ L+L +P + LL +T TK Sbjct: 4 VKWTKEQRQVIDSRNTNLLVSAAAGSGKTAVLIERIIELVLDEKNPIDINKLLVVTFTKL 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA+EM RV S I K + + K LL G + Sbjct: 64 AASEMRERV---------------SKAIEKKLEENQENEHLQKQLLLL-------SGADI 101 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TI +FC+ ++ + N+ S+ I D +++ L +E + + +N++ + Sbjct: 102 TTIDSFCKDVLISYAHLVNLDSNIKIIDPSENEVLAKEVMQELFEELYENNDDSFLRLVD 161 Query: 194 EILEISNDED 203 + + DE Sbjct: 162 WYAKKNTDEG 171 >gi|256848517|ref|ZP_05553959.1| recombination helicase AddA [Lactobacillus coleohominis 101-4-CHN] gi|256714784|gb|EEU29763.1| recombination helicase AddA [Lactobacillus coleohominis 101-4-CHN] Length = 1281 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 39/231 (16%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHT 71 + T + +D R VSA+AGSGKT +LV RV++LL N H +L +T T Sbjct: 1 MSSFKPTPEQTRAINDRDRDILVSASAGSGKTAVLVDRVVKLLKENRHLNIDEMLLVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 K AA M R+ + + A S+ + T + Sbjct: 61 KEAAKNMRERIRKRLVADSND--------------------------QHMKTQINRLALA 94 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFA-IADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + TIH+FCE +++++ + + + D + L E+ ++ + Sbjct: 95 NISTIHSFCEQVIKRYYYVIGLDPQYRLVTDATEQALLKEQVWNDLQEKRFKEDYAKADP 154 Query: 191 A---FYEILEISNDE--DIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + F ++ E D ++ + +++ KL + + + + Sbjct: 155 SKWHFSQLAENFADAKSNVGEGLQEVVE-----KLYQEANAQPDPDQWLSQ 200 >gi|94311069|ref|YP_584279.1| DNA helicase/exodeoxyribonuclease V subunit A [Cupriavidus metallidurans CH34] gi|93354921|gb|ABF09010.1| UvrD/REP helicase [Cupriavidus metallidurans CH34] Length = 1187 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 56/219 (25%), Positives = 107/219 (48%), Gaps = 7/219 (3%) Query: 1 MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60 M +++ +++ T A DP RS V A AGSGKT +LV R++RLLLA A Sbjct: 1 MTEVHAYLRDGQSVGEADFT----RAACDPGRSVVVEACAGSGKTWLLVARLVRLLLAGA 56 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT-KIQGKKPNKSDMSKARH 119 P +L +T T+ AA EM R+LE+++ + +DE + ++ + ++ + +AR Sbjct: 57 APHEILAITFTRKAAEEMRERLLEVLSQLAGGTDEAVLTQLEMRGLSPDAARAALPRART 116 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 L +L +PG + + T H + +++ PL + I ++ E + ++ EA + Sbjct: 117 LHAQVLASPGRMAIDTFHGWFGTLLRGAPLSSGIVPGASL--REDALRMKREAWAPFWRA 174 Query: 180 IMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTAL 218 + +L++A+ +++ D L+ + R Sbjct: 175 LAQPQYADLREAYEALVDAIGDFQARGLLDRMFHARNEW 213 >gi|290477108|ref|YP_003470021.1| DNA-dependent ATPase I and helicase II [Xenorhabdus bovienii SS-2004] gi|289176454|emb|CBJ83263.1| DNA-dependent ATPase I and helicase II [Xenorhabdus bovienii SS-2004] Length = 721 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 90/220 (40%), Gaps = 45/220 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ++ ++ + E + AS + V A AGSGKT +LV R+ LL + NA P +++ Sbjct: 2 DVSYLLESLNDKQREAVTAS--RTNMLVLAGAGSGKTRVLVHRIAWLLSVENASPFSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T +AAEM HR+ +I + Sbjct: 60 VTFTNKSAAEMRHRIENLIGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H+ +++ L+AN+ F I D E +LI K + ++ LD+ + Sbjct: 82 QGGMWIGTFHSLAHRLLRFHHLDANLPQDFQILDSEDQHRLI----KRIIKAMNLDDKQW 137 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 + + DE + +I N + + +Y Sbjct: 138 PARQGMWYINGKKDEGLRPQHIEIYGNPVETTWMKIYQAY 177 >gi|89092193|ref|ZP_01165147.1| DNA helicase II [Oceanospirillum sp. MED92] gi|89083281|gb|EAR62499.1| DNA helicase II [Oceanospirillum sp. MED92] Length = 737 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 74/199 (37%), Gaps = 45/199 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + + ID ++ + + A P ++ V A AGSGKT +LV R+ L+ P +++ Sbjct: 2 DVTHIIDSLNDAQRNAVTA--PVKNLLVLAGAGSGKTRVLVHRIAWLIQTEGISPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ E++ Sbjct: 60 VTFTNKAAKEMRGRIEELLG--------------------------------------LN 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 P G+ V T H +++ +A + +F I D + +LI+ K + LD+ Sbjct: 82 PQGMWVGTFHGLAHRLLRAHWQDAGLPENFQIMDSDDQLRLIKRLAK----EMGLDDKRW 137 Query: 188 LKKAFYEILEISNDEDIET 206 + F + D + Sbjct: 138 PPRQFQWYINDKKDNGLRA 156 >gi|148826204|ref|YP_001290957.1| DNA-dependent helicase II [Haemophilus influenzae PittEE] gi|229846218|ref|ZP_04466330.1| DNA-dependent helicase II [Haemophilus influenzae 7P49H1] gi|148716364|gb|ABQ98574.1| DNA helicase II [Haemophilus influenzae PittEE] gi|229811222|gb|EEP46939.1| DNA-dependent helicase II [Haemophilus influenzae 7P49H1] Length = 726 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 81/220 (36%), Gaps = 41/220 (18%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ Sbjct: 2 DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + + Sbjct: 60 VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ + T H+ +++ L+ + F I D E ++LI K L D Sbjct: 86 LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQRRLI----KRLLKLHNFDEKAF 141 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 K + DE + + ++R + I + Y Sbjct: 142 PPKQACWYINNKKDEGLRPNDIEDFNDRQEREWIKIYQIY 181 >gi|170728818|ref|YP_001762844.1| DNA-dependent helicase II [Shewanella woodyi ATCC 51908] gi|169814165|gb|ACA88749.1| DNA helicase II [Shewanella woodyi ATCC 51908] Length = 721 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L Sbjct: 2 DVSSLLDGLNDKQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV ++ + Sbjct: 60 VTFTNKAAAEMRERVEKVSGS--------------------------------------N 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + + T H +++ +AN+ F I D + +LI K L S+ LD + Sbjct: 82 MGRMWIGTFHGLAHRLLRTHYQDANLPQTFQIIDSDDQLRLI----KRILKSLNLDEKQY 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D+ + Sbjct: 138 PPRQAQGYINGKKDQGLR 155 >gi|94970649|ref|YP_592697.1| DNA helicase/exodeoxyribonuclease V, subunit A [Candidatus Koribacter versatilis Ellin345] gi|94552699|gb|ABF42623.1| DNA helicase/exodeoxyribonuclease V, subunit A [Candidatus Koribacter versatilis Ellin345] Length = 1135 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 63/206 (30%), Positives = 109/206 (52%), Gaps = 11/206 (5%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAA 74 I+ E+ D TRS V A AGSGKT +L+QR L LL P ++L +T T+ A Sbjct: 11 IAPDADERAKVLDATRSFIVQAPAGSGKTELLMQRYLTLLAHESVTTPESVLAITFTRKA 70 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM +RVL+ + + + + E A + + + M++ R + IL+ P L+++ Sbjct: 71 AAEMRNRVLKALESANGPAPESAHA----LLSWELARKVMARDRAMGWNILQNPEQLEIR 126 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T+ +FCE I + PL A + AIA++ + L EA + TL ++ D E ++A + Sbjct: 127 TVDSFCEKIANRTPLLAGLGRSPAIAEDFE--PLYSEAAQRTLL-MLGDEKAETREAMSQ 183 Query: 195 ILEISND--EDIETLISDIISNRTAL 218 +L ++ + ++ LI +++ R Sbjct: 184 VLADQDNSFDRVQGLIVELLKRREQW 209 >gi|134299275|ref|YP_001112771.1| UvrD-like DNA helicase, C terminal [Desulfotomaculum reducens MI-1] gi|251764523|sp|A4J4E3|ADDA_DESRM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|134051975|gb|ABO49946.1| DNA helicase/exodeoxyribonuclease V, subunit A [Desulfotomaculum reducens MI-1] Length = 1244 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 33/221 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + + + V+A AG+GKT +LV+R++ L+ P LL +T T AAA Sbjct: 6 WTAEQLAAITTRDTNLLVAAAAGAGKTAVLVERIIGLITDPHRPVDVDQLLIVTFTNAAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + ++ K + P+ +++ +L + T Sbjct: 66 AEMRERIGQALS---------------KALQENPHSKRLARQLTML-------NRASITT 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++++ + ++ F +ADE +++ L + + +N E+ F + Sbjct: 104 LHSFCLDLLRRYFYQLDLDPGFRVADEVEAELLRLDVLEELFERRYNQDNVEV---FARL 160 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ + ++ + D++ L+L F S+ + + Sbjct: 161 VDSYGGQRDDSRLQDLV-----LELYRFSGSHPLPVQWLTS 196 >gi|114049045|ref|YP_739595.1| DNA-dependent helicase II [Shewanella sp. MR-7] gi|113890487|gb|ABI44538.1| ATP-dependent DNA helicase UvrD [Shewanella sp. MR-7] Length = 722 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 74/198 (37%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L Sbjct: 2 DVSSLLDGLNDKQREAVAA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV ++ Sbjct: 60 VTFTNKAAAEMRERVEKVAGT--------------------------------------N 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + + T H +++ +A++ F I D + +L+ K L S+ LD + Sbjct: 82 MGRMWIGTFHGLAHRLLRTHFQDADLPQSFQILDSDDQVRLL----KRILKSLNLDEKQY 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D+ + Sbjct: 138 PPRQAQAYINGKKDQGLR 155 >gi|126179444|ref|YP_001047409.1| UvrD/REP helicase [Methanoculleus marisnigri JR1] gi|125862238|gb|ABN57427.1| UvrD/REP helicase [Methanoculleus marisnigri JR1] Length = 1080 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 83/199 (41%), Gaps = 30/199 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + T+ + A D + S V+A AG+GKTH+LVQ+ L LL + +L LT T+ AA Sbjct: 1 MGLTERQARAALDHSTSKCVTAGAGTGKTHVLVQKYLSLLESGVGVGNILALTFTEKAAG 60 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV I + + E KV T Sbjct: 61 EMKIRVRRAIAEKEGERWDAIRDEFLW---------------------------AKVSTF 93 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC +++++F + A + FA+ DE ++ +L EEA + D + A L Sbjct: 94 HSFCASVLREFSIGAGVGPSFAVLDEGEAFRLREEAIDDLIH---GDPPTACRDAVIGAL 150 Query: 197 EISNDEDIETLISDIISNR 215 +++ + + S R Sbjct: 151 RAVGAYELKNYLEALYSRR 169 >gi|291615722|ref|YP_003518464.1| UvrD [Pantoea ananatis LMG 20103] gi|291150752|gb|ADD75336.1| UvrD [Pantoea ananatis LMG 20103] Length = 723 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 45/200 (22%) Query: 7 FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65 + SE +D ++ + E + A P + V A AGSGKT +LV R+ LL + N P ++ Sbjct: 3 LMDVSELLDGLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSI 60 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 + +T T AAAEM HR+ ++I Sbjct: 61 MAVTFTNKAAAEMRHRIEQLIGT------------------------------------- 83 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 + G + T H +++ L+A + F I D E +L+ K + ++ LD Sbjct: 84 -SQGECGLGTFHGLAHRLLRAHHLDAGLPQDFQILDSEDQLRLL----KRLIKAMNLDEK 138 Query: 186 EELKKAFYEILEISNDEDIE 205 + + + DE + Sbjct: 139 QWPARQGMWYINGKKDEGLR 158 >gi|325578673|ref|ZP_08148749.1| ATP-dependent helicase PcrA [Haemophilus parainfluenzae ATCC 33392] gi|325159712|gb|EGC71843.1| ATP-dependent helicase PcrA [Haemophilus parainfluenzae ATCC 33392] Length = 725 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 81/220 (36%), Gaps = 41/220 (18%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ Sbjct: 2 DISELLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + ++ + Sbjct: 60 VTFTNKAAAEMRHRIQDTLSKHAQP----------------------------------N 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ + T H+ +++ + N+ F I D E +L K + D+ Sbjct: 86 LFGMWIGTFHSIAHRLLRAHHFDVNLPQDFQILDSEDQLRL----VKRLMKLHNYDDKAF 141 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 K + DE + D +R + I + Y Sbjct: 142 PPKQACWYINNKKDEGLRPQDIDDFGDRQEKEWIKIYQIY 181 >gi|301156005|emb|CBW15476.1| DNA-dependent ATPase I and helicase II [Haemophilus parainfluenzae T3T1] Length = 725 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 82/220 (37%), Gaps = 41/220 (18%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ Sbjct: 2 DISELLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + ++ + Sbjct: 60 VTFTNKAAAEMRHRIQDTLSKHAQS----------------------------------N 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ + T H+ +++ L+ N+ F I D E +L K + D+ Sbjct: 86 LFGMWIGTFHSIAHRLLRAHHLDVNLPQDFQILDSEDQLRL----VKRLMKLHNYDDKAF 141 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 K + DE + D +R + I + Y Sbjct: 142 PPKQACWYINNKKDEGLRPQDIDDFGDRQEKEWIKIYQIY 181 >gi|127514313|ref|YP_001095510.1| DNA-dependent helicase II [Shewanella loihica PV-4] gi|126639608|gb|ABO25251.1| ATP-dependent DNA helicase UvrD [Shewanella loihica PV-4] Length = 726 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L Sbjct: 2 DVSSLLDGLNDKQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV ++ + Sbjct: 60 VTFTNKAAAEMRERVEKVSGS--------------------------------------N 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + + T H +++ +AN+ F I D + +LI K L S+ LD + Sbjct: 82 MGRMWIGTFHGLAHRLLRTHYQDANLPQSFQILDSDDQLRLI----KRILKSLNLDEKQY 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D+ + Sbjct: 138 PPRQAQGYINGKKDQGLR 155 >gi|71906108|ref|YP_283695.1| UvrD/REP helicase [Dechloromonas aromatica RCB] gi|71845729|gb|AAZ45225.1| UvrD/REP helicase [Dechloromonas aromatica RCB] Length = 1134 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 51/208 (24%), Positives = 94/208 (45%), Gaps = 10/208 (4%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID + + + + A + S V A AG+GKT +L QR LRLL HP +L LT T Sbjct: 4 AIDRLEEDRIARQRALEVA-SFIVEAPAGAGKTELLTQRYLRLLAVVEHPEEVLALTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ + + S + L + K + ++ ++L PG L+ Sbjct: 63 KAATEMRDRI---LGSLELASGDKLPEQPHKQLTFGLARQVLAHDAERGWSLLGHPGRLR 119 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T+ + C ++ +Q P + S ++D+ ++ A + TL M+++ + + Sbjct: 120 ITTLDSLCASLARQMPYLSRFGSQPGVSDDAEAH--YATAARRTLE--MVESGSDDAEVI 175 Query: 193 YEILEISNDE--DIETLISDIISNRTAL 218 E L ++ +E L+ ++ R Sbjct: 176 AEALAFMDNNAGRLEKLLIAMLGRRDQW 203 >gi|120611309|ref|YP_970987.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1] gi|120589773|gb|ABM33213.1| DNA helicase/exodeoxyribonuclease V, subunit A [Acidovorax citrulli AAC00-1] Length = 1168 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 50/202 (24%), Positives = 91/202 (45%), Gaps = 10/202 (4%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 +A DP RS V A AG+GKT +LV R+LR LL P +L +T TK AA EM R+LE Sbjct: 24 AIACDPARSVAVEACAGAGKTWMLVSRILRALLEGCEPHEILAITFTKKAAGEMRQRLLE 83 Query: 85 IITAWSHLSDEILSAEITK--IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + A+S L E+ I ++ ++ + L + +L ++++T H++ A Sbjct: 84 WLEAFSRTPLPALRGELLARGIPAEQATDDACARLQGLFLQVLGAGRPVQIRTFHSWFAA 143 Query: 143 IMQQFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 ++ PL + +F + +++ + + L + D L F + + + Sbjct: 144 LLGTAPLAVLQSRGLPLNFELLEDD--AEAVRRVWPLFLQQVAADAG--LGADFADSVAL 199 Query: 199 SNDEDIETLISDIISNRTALKL 220 + ++ R +L Sbjct: 200 HGRSQTRKALEAALAKRVEFEL 221 >gi|295396964|ref|ZP_06807086.1| ATP-dependent nuclease subunit A [Aerococcus viridans ATCC 11563] gi|294974817|gb|EFG50522.1| ATP-dependent nuclease subunit A [Aerococcus viridans ATCC 11563] Length = 1287 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 20/196 (10%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT +LVQR+L+ + LL +T T+ AA+EM Sbjct: 21 TADQWAAIHLEGDNLLVSASAGSGKTSVLVQRILQKVRRGYGVDELLVVTFTEKAASEMK 80 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + N+ + +R + + + TI AF Sbjct: 81 ERLEVALQEM-------------------INEESDADSRQHYLQQIAKLPQANISTIDAF 121 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C+ ++Q++ ++ + + DE ++ E +S ++ + N E + Sbjct: 122 CKQVIQRYYFLIDLDPVYRLLTDETENMMHFENVWESLKEDLLAEGNPEYLRMANYFASD 181 Query: 199 SNDEDIETLISDIISN 214 D+ I+ LI D+ + Sbjct: 182 RKDDKIDRLIFDLYNK 197 >gi|184154513|ref|YP_001842853.1| ATP-dependent nuclease subunit A [Lactobacillus fermentum IFO 3956] gi|251764528|sp|B2GEY4|ADDA_LACF3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|183225857|dbj|BAG26373.1| ATP-dependent nuclease subunit A [Lactobacillus fermentum IFO 3956] Length = 1337 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 97/210 (46%), Gaps = 39/210 (18%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN----------AHPSTLLC 67 + +K ++ +D + VSA+AGSGKT +LV+RV++L+ + +L Sbjct: 4 TPSKEQEPAINDRQKDILVSASAGSGKTAVLVERVIQLMETGLSKDAKPSERPNIDDILM 63 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA M R+ + + DE + A++ ++ Sbjct: 64 VTFTTDAAKNMRDRIRRRLVGAT---DEHMKAQVARL----------------------- 97 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + TIH+FCE +++++ ++ F + D+ + + L E+A ++TL + + ++ Sbjct: 98 -ALANISTIHSFCEQLIKRYYYVIDLDPQFRLIDDAEQQLLKEQAWQATLDDWVANPDQ- 155 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTA 217 A +++++ ++E+++ + + A Sbjct: 156 -VGALHQLIDNFGAGNLESVVQALDTEADA 184 >gi|320529153|ref|ZP_08030245.1| ATP-dependent nuclease subunit A [Selenomonas artemidis F0399] gi|320138783|gb|EFW30673.1| ATP-dependent nuclease subunit A [Selenomonas artemidis F0399] Length = 1281 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 54/228 (23%), Positives = 92/228 (40%), Gaps = 27/228 (11%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAA 75 + T +Q ++ V+A AGSGKT +LV+R++ + + +L LT TKAAA Sbjct: 5 MRFTADQQRAIETRGQNILVAAAAGSGKTRVLVERIIAQVRSGELSLDRVLVLTFTKAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + L+AEI +I ++ SD + L G + T Sbjct: 65 AEMRERI-----------ETALNAEIDRIAEERAATSDADEEIAALERQRILLTGADIST 113 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS----IMLDNNEELKKA 191 H+FC+ I+Q + I ++ +A E++ L + + L + E A Sbjct: 114 FHSFCQRILQTYIEATQIPPNYRLASEQEILLLTNDVFERLLEEKYSAAAAQGDAEGFLA 173 Query: 192 FYEIL--EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 F + + DE ++ + L L F S + Sbjct: 174 FADAYVGDKGGDERLQKAV---------LALYKFALSQPSPETWLAAQ 212 >gi|58617374|ref|YP_196573.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium str. Gardel] gi|58416986|emb|CAI28099.1| Putative Exodeoxyribonuclease V beta chain [Ehrlichia ruminantium str. Gardel] Length = 857 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 13/183 (7%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 W+SA+AG+GKT ILV RVL+LL+ +LCLT T AAA EM+ R+ ++AW+ L+ Sbjct: 13 IWISASAGTGKTRILVNRVLKLLITGH--QNILCLTFTNAAAYEMTERIHSTLSAWTTLT 70 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 D L ++ +I ++ +AR L +I L ++TIH+FC ++ FP+EA I Sbjct: 71 DTELKTDLQEIIHSNITAQELHQARRLFNSIHNI--SLSIKTIHSFCYQLISAFPIEAGI 128 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 + + + D +S + TL + + +N I ++ + L+ ++S Sbjct: 129 SPNCIVKDLSES---FPKIFYKTLNDVTIKHN------ISAISSEITEKTLYDLLYKLLS 179 Query: 214 NRT 216 N+ Sbjct: 180 NQD 182 >gi|116749176|ref|YP_845863.1| UvrD/REP helicase [Syntrophobacter fumaroxidans MPOB] gi|116698240|gb|ABK17428.1| DNA helicase/exodeoxyribonuclease V, subunit A [Syntrophobacter fumaroxidans MPOB] Length = 1162 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 52/167 (31%), Positives = 76/167 (45%), Gaps = 6/167 (3%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 ++ + DP+ S + A AGSGKT +L R LRLL HP +L +T T AA+EM R Sbjct: 15 EQRARSLDPSGSFHLEAPAGSGKTFLLTARFLRLLGLVEHPQQILAMTFTNKAASEMRER 74 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG-LKVQTIHAFC 140 V + + G+ + + + ARH L G L++QT H+FC Sbjct: 75 VCRYLQRAKRGERPE-----AEPDGELLDAAAKALARHQAHEPLLMGGELLRIQTFHSFC 129 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 A+ Q PLEA I + E + + E TL + L E+ Sbjct: 130 HALAAQAPLEAGIAPGSTLMAEPEQTFFLREVIDDTLREVALRRPED 176 >gi|222475386|ref|YP_002563803.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale str. Florida] gi|255004493|ref|ZP_05279294.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale str. Virginia] gi|222419524|gb|ACM49547.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale str. Florida] Length = 867 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 104/208 (50%), Gaps = 18/208 (8%) Query: 18 SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 S+ +Q A+DP R W+SA+AG+GKT +LV RV+RL+++ +LCLT T AA Sbjct: 4 SKLDIQQQSATDPEREFVWISASAGTGKTKLLVHRVIRLMVSGQ--RNILCLTFTNAAVH 61 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV I+ W L E L + ++ ++ + +AR L + P LK+QT+ Sbjct: 62 EIRERVYGIVAEWLALPKEELVNRLREVCYQQIDHQHYVRARRLF---FDVPSILKIQTV 118 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST--LASIMLDNNEELKKAFYE 194 H+FC +++ FP E +++ F + E S + + +L + + + E Sbjct: 119 HSFCHSLVASFPAETGVSADFE----------MRELSWSYPKIFAQLLREDRSIDRDLSE 168 Query: 195 ILEISNDEDIETLISDIISNRTALKLIF 222 I ++ + L+ II+ + + I Sbjct: 169 ISVELAEDTLYNLVYQIINKQHKIVPIE 196 >gi|74316051|ref|YP_313791.1| DNA helicase/exodeoxyribonuclease V subunit A [Thiobacillus denitrificans ATCC 25259] gi|74055546|gb|AAZ95986.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC 25259] Length = 1089 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 3/207 (1%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 + +A P RSA V A AGSGKT +LV R+LRLLLA A PS LL +T T+ AA EM+ R+ Sbjct: 6 DAAIALSPNRSAVVEACAGSGKTWLLVSRMLRLLLAGAAPSELLAITFTRKAAQEMTDRL 65 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPN-KSDMSKARHLLITILETPGGLKVQTIHAFCE 141 E + + D + A + + + + + +AR LL +L G V T H + Sbjct: 66 HEWLRVLALADDATVRAFLREREVPADEIDALLPRARGLLEAVLSAQPGPTVTTFHGWFL 125 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 ++++ PLEA + + + E +L+ E ++ A A +L + Sbjct: 126 DLLKRAPLEAGLPWGAPLLERE--SELLNEVRERLFARWAAAPASPEGAALLALLASLGE 183 Query: 202 EDIETLISDIISNRTALKLIFFFFSYL 228 ++ L+ + I+ R + + Sbjct: 184 HNLRALLRNFIAARIEWQAFARDQADP 210 >gi|254995195|ref|ZP_05277385.1| hypothetical protein AmarM_04376 [Anaplasma marginale str. Mississippi] Length = 866 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 57/198 (28%), Positives = 101/198 (51%), Gaps = 15/198 (7%) Query: 18 SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 S+ +Q A+DP R W+SA+AG+GKT +LV RV+RL+++ +LCLT T AA Sbjct: 4 SKLDIQQQSATDPEREFVWISASAGTGKTKLLVHRVIRLMVSGQ--RNILCLTFTNAAVH 61 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV I+ W L E L + ++ ++ + +AR L + P LK+QT+ Sbjct: 62 EIRERVYGIVAEWLALPKEELVNRLREVCYQQIDHQHYVRARRLF---FDVPSILKIQTV 118 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC +++ FP E +++ F + E + + + +L + + + EI Sbjct: 119 HSFCHSLVASFPAETGVSADFE---------MRELSSYPKIFAQLLREDRSIDRDLSEIS 169 Query: 197 EISNDEDIETLISDIISN 214 ++ + L+ II+ Sbjct: 170 VELAEDTLYNLVYQIINK 187 >gi|88658223|ref|YP_507207.1| ATP-dependent DNA helicase UvrD [Ehrlichia chaffeensis str. Arkansas] gi|88599680|gb|ABD45149.1| ATP-dependent DNA helicase, UvrD/Rep family [Ehrlichia chaffeensis str. Arkansas] Length = 860 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 18/207 (8%) Query: 26 LASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 +A++P S W+SA+AG+GKT ILV RVLRLL+ +LCLT T AA EM+ R+ Sbjct: 4 IATNPFYSFIWISASAGTGKTKILVNRVLRLLVTGHK--NILCLTFTNTAAHEMTERIHS 61 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 II+ W+ L +E L + I + +AR L + L ++TIH+FC ++ Sbjct: 62 IISTWAILKNEELKKALKDIIPTNITPKEYKRARELFNNLQNV--SLSIKTIHSFCYQLI 119 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204 FP+E I +I D E+ ++ ++ K I + I Sbjct: 120 STFPIETGIAPDCSIKD-------FSESFTKIFHKLL--HDPTTKHHLSAISHEITEATI 170 Query: 205 ETLISDIISNRTALKLIFFFFSYLWRR 231 L+ +++ + F + ++++ Sbjct: 171 YDLLYKLLNK----QHYNFNQNSIYKK 193 >gi|255003370|ref|ZP_05278334.1| Putative exodeoxyribonuclease V beta chain [Anaplasma marginale str. Puerto Rico] Length = 867 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 104/208 (50%), Gaps = 18/208 (8%) Query: 18 SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 S+ +Q A+DP R W+SA+AG+GKT +LV RV+RL+++ +LCLT T AA Sbjct: 4 SKLDIQQQSATDPEREFVWISASAGTGKTKLLVHRVIRLMVSGQ--RNILCLTFTNAAVH 61 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV I+ W L E L + ++ ++ + +AR L + P LK+QT+ Sbjct: 62 EIRERVYGIVAEWLALPKEELVNRLREVCYQQIDHQHYVRARRLF---FDVPSILKIQTV 118 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST--LASIMLDNNEELKKAFYE 194 H+FC +++ FP E +++ F + E S + + +L + + + E Sbjct: 119 HSFCHSLVASFPAETGVSADFE----------MRELSWSYPKIFAQLLREDRSIDRDLSE 168 Query: 195 ILEISNDEDIETLISDIISNRTALKLIF 222 I ++ + L+ II+ + + I Sbjct: 169 ISVELAEDTLYNLVYQIINKQHKIVPIE 196 >gi|57239354|ref|YP_180490.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium str. Welgevonden] gi|58579320|ref|YP_197532.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium str. Welgevonden] gi|57161433|emb|CAH58357.1| putative exodeoxyribonuclease V beta chain [Ehrlichia ruminantium str. Welgevonden] gi|58417946|emb|CAI27150.1| Putative Exodeoxyribonuclease V beta chain [Ehrlichia ruminantium str. Welgevonden] Length = 857 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 13/183 (7%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 W+SA+AG+GKT ILV RVL+LL+ +LCLT T AAA EM+ R+ ++AW+ L+ Sbjct: 13 IWISASAGTGKTRILVNRVLKLLITGH--QNILCLTFTNAAAYEMTERIHSTLSAWTTLT 70 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 D L ++ +I ++ +AR L +I L ++TIH+FC ++ FP+EA I Sbjct: 71 DTELKTDLQEIIHSNITVQELHQARRLFNSIHNI--SLSIKTIHSFCYQLISAFPIEAGI 128 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 + + + D +S + TL + + +N I ++ + L+ ++S Sbjct: 129 SPNCIVKDLSES---FPKIFYKTLNDVTIKHN------ISAISSEITEKTLYDLLYKLLS 179 Query: 214 NRT 216 N+ Sbjct: 180 NQD 182 >gi|121607642|ref|YP_995449.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2] gi|121552282|gb|ABM56431.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2] Length = 1140 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 51/204 (25%), Positives = 100/204 (49%), Gaps = 15/204 (7%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 +A DP RS V A AG+GKT +LV R+LR LL P +L +T TK AA EM R+ E Sbjct: 28 AIACDPARSVAVQACAGAGKTWMLVSRMLRALLDGCAPHEILAITFTKKAAGEMRQRLQE 87 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKA--RHLLITILETPGGLKVQTIHAFCEA 142 + ++ E LSAE+ +G +P ++ +A ++L +L++ ++++T H++ A Sbjct: 88 WLEEFAQAPPERLSAELVA-RGMRPERALEQRAALQNLYRQLLDSGRPVQIRTFHSWFAA 146 Query: 143 IMQQFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIM--LDNNEELKKAFYEIL 196 ++ PL + + F + +++ EA ++ + + + + L+ + ++ Sbjct: 147 LLGMAPLALLQAQGLPTQFQLLEDD------AEAVRAVWSPFLHTVAGDAGLRADYTAVV 200 Query: 197 EISNDEDIETLISDIISNRTALKL 220 ++ ++ R L Sbjct: 201 ARHGRSQTHKALAAALNRRVEFDL 224 >gi|260582117|ref|ZP_05849911.1| DNA helicase II [Haemophilus influenzae NT127] gi|260094749|gb|EEW78643.1| DNA helicase II [Haemophilus influenzae NT127] Length = 727 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 81/220 (36%), Gaps = 41/220 (18%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + +E +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ Sbjct: 3 DIAELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + + Sbjct: 61 VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 86 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ + T H+ +++ L+ + F I D E ++LI K L D Sbjct: 87 LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQRRLI----KRLLKLHNFDEKAF 142 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 K + DE + + ++R + I + Y Sbjct: 143 PPKQACWYINNKKDEGLRPNDIEDFNDRQEREWIKIYQIY 182 >gi|145641213|ref|ZP_01796793.1| DNA helicase II [Haemophilus influenzae R3021] gi|145274050|gb|EDK13916.1| DNA helicase II [Haemophilus influenzae 22.4-21] Length = 726 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 81/220 (36%), Gaps = 41/220 (18%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + +E +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ Sbjct: 2 DIAELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + + Sbjct: 60 VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ + T H+ +++ L+ + F I D E ++LI K L D Sbjct: 86 LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQRRLI----KRLLKLHNFDEKAF 141 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 K + DE + + ++R + I + Y Sbjct: 142 PPKQACWYINNKKDEGLRPNDIEDFNDRQEREWIKIYQIY 181 >gi|94677005|ref|YP_588596.1| DNA helicase II [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220155|gb|ABF14314.1| DNA helicase II [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 646 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 49/196 (25%), Positives = 76/196 (38%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +L R+ LL + N PS++L +T Sbjct: 4 SHLLDSLNNKQKEAVSA--PLGNILVLAGAGSGKTRVLTHRIAWLLAVENNPPSSILAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM +R+ I+ P Sbjct: 62 FTNKAATEMYYRIKNILGK--------------------------------------HPC 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ + T H+ I++ +EAN+ F I D E KL+ K + + LD N Sbjct: 84 GMWIGTFHSLAYRILRIHYIEANLPKDFHIIDSEDQHKLL----KRLIRYLNLDENYWSA 139 Query: 190 KAFYEILEISNDEDIE 205 + + DE Sbjct: 140 RQAMCYINAKKDEGYR 155 >gi|254780085|ref|YP_003058192.1| putative recombination protein RecB [Helicobacter pylori B38] gi|254001998|emb|CAX30257.1| ATP-dependent DNA helicase [Helicobacter pylori B38] Length = 945 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 13/186 (6%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIM 144 + E + I + K + A+ + L +++ TI AF ++I+ Sbjct: 65 KENLESGKEKSQNILKELEEKYHLDPSLVRNSAQKIYQRFLN--AEIRISTIDAFFQSIL 122 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN---D 201 ++F ++++F + E +K ++ + L+++ + EEL + L N D Sbjct: 123 RKFCWFVGLSANFEV--NEDTKAHQQQLNEGFLSALNNEQLEELSVFITQCLSYDNYTSD 180 Query: 202 EDIETL 207 +E L Sbjct: 181 SILERL 186 >gi|68171208|ref|ZP_00544613.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa] gi|67999363|gb|EAM86007.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa] Length = 860 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 98/207 (47%), Gaps = 18/207 (8%) Query: 26 LASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 +A++P S W+SA+AG+GKT ILV RVLRLL+ +LCLT T AA EM+ R+ Sbjct: 4 IATNPFYSFIWISASAGTGKTKILVNRVLRLLVTGHK--NILCLTFTNTAAHEMTERIHS 61 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 II+ W+ L +E L + I + +AR L + L ++TIH+FC ++ Sbjct: 62 IISTWAILKNEELKKALKDIIPTNITPKEYKRARELFNNLQNV--SLSIKTIHSFCYQLI 119 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204 FP+E I +I D E+ ++ ++ K I + I Sbjct: 120 STFPIETGIAPDCSIKD-------FSESFTKIFHKLL--HDPTTKHHLSAISHEITEATI 170 Query: 205 ETLISDIISNRTALKLIFFFFSYLWRR 231 L+ +++ + F + ++++ Sbjct: 171 YDLLYKLLNK----QHYNFNQNSIYKK 193 >gi|294142649|ref|YP_003558627.1| DNA helicase II [Shewanella violacea DSS12] gi|293329118|dbj|BAJ03849.1| DNA helicase II [Shewanella violacea DSS12] Length = 721 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 73/198 (36%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ ++ P S V A AGSGKT +L R+ L+ + P ++L Sbjct: 2 DVSSLLDGLND--EQRAAVGAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV ++ + Sbjct: 60 VTFTNKAAAEMRDRVEKVSGS--------------------------------------N 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + + T H +++ +AN+ F I D + +LI K L S+ LD + Sbjct: 82 MGRMWIGTFHGLAHRLLRTHYKDANLPQTFQIIDSDDQLRLI----KRILKSLNLDEKQY 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D+ + Sbjct: 138 PPRQAQGYINGKKDQGLR 155 >gi|317179739|dbj|BAJ57527.1| helicase [Helicobacter pylori F30] Length = 949 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 15/188 (7%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW- 89 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 90 -SHLSDEILSAEITKIQGKKPNKSDM------SKARHLLITILETPGGLKVQTIHAFCEA 142 +L DE + I + K + ++A+ + L +++ TI AF ++ Sbjct: 65 KENLEDEKEKEKSQNILKELEEKYRLNPSFVQNRAQKIYQRFLN--AEIRISTIDAFFQS 122 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS--- 199 I+++F ++++F + E +K ++ +S L+++ + EEL + L Sbjct: 123 ILRKFCWFVGLSANFEV--NEDTKAHQQQLNESFLSALNGEQLEELSVFIAQCLSYDSYT 180 Query: 200 NDEDIETL 207 +D +E L Sbjct: 181 SDSILERL 188 >gi|157373608|ref|YP_001472208.1| DNA-dependent helicase II [Shewanella sediminis HAW-EB3] gi|157315982|gb|ABV35080.1| DNA helicase II [Shewanella sediminis HAW-EB3] Length = 721 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P ++L Sbjct: 2 DVSSLLDGLNDEQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV ++ + Sbjct: 60 VTFTNKAAAEMRERVEKVSGS--------------------------------------N 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + + T H +++ +AN+ F I D + +LI K L S+ LD + Sbjct: 82 MGRMWIGTFHGLAHRLLRTHYKDANLPQTFQIIDSDDQLRLI----KRILKSLHLDEKQY 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D+ + Sbjct: 138 PPRQAQGYINGKKDQGLR 155 >gi|308069947|ref|YP_003871552.1| ATP-dependent nuclease subunit A [Paenibacillus polymyxa E681] gi|305859226|gb|ADM71014.1| ATP-dependent nuclease subunit A [Paenibacillus polymyxa E681] Length = 1339 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 92/221 (41%), Gaps = 32/221 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75 + + S+ + V+A AGSGKT +LV+R++R ++ LL T TKAAA Sbjct: 18 WSDDQWRAISESGNNMLVAAAAGSGKTAVLVERIIRKIVDPQLGFSVDRLLVATFTKAAA 77 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ E + ++ ++P + + LL + T Sbjct: 78 AEMRQRIREAL---------------ERVLEQEPESEHVRRQLSLL-------NRASITT 115 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC ++++ + F I +E +++ L +E + ++E F + Sbjct: 116 LHSFCMEVIRRHYQAIPLDPGFRIMNEHETELLRQELLEELFEEKYEAHDE--GSTFRRL 173 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ + E + + ++ +L F S+ W + + Sbjct: 174 VDWFSGERTDDAMYVLVQ-----RLYDFSQSHPWPEHWLRE 209 >gi|254514374|ref|ZP_05126435.1| UvrD/REP helicase family protein [gamma proteobacterium NOR5-3] gi|219676617|gb|EED32982.1| UvrD/REP helicase family protein [gamma proteobacterium NOR5-3] Length = 1108 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 90/204 (44%), Gaps = 9/204 (4%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 + A DP S VSA AGSGKT +LV+R L LL P ++ +T T+ AAAEM R Sbjct: 7 DARERAVDPLGSFCVSAPAGSGKTGLLVRRFLGLLARVKDPEHVVAITFTRKAAAEMRAR 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V+ + + + + + R L +L P L++QTI +FC Sbjct: 67 VVNALRDAEA---GVTAGNPHEEALLAAAHAVREHDRALGWGLLANPSRLRIQTIDSFCG 123 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 + +Q P+ + D S+ L EA +S L + E +L + D Sbjct: 124 YLTRQMPVLSGCGGQVTATD--DSRPLFREAIESFLHRELAQAGEGQALDIQTLL-LHLD 180 Query: 202 EDIET---LISDIISNRTALKLIF 222 D ET L+S +++ R + +F Sbjct: 181 NDWETAVELLSGLLARREQWQPVF 204 >gi|308185340|ref|YP_003929473.1| putative recombination protein RecB [Helicobacter pylori SJM180] gi|308061260|gb|ADO03156.1| putative recombination protein RecB [Helicobacter pylori SJM180] Length = 953 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 13/186 (6%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIM 144 + E + I + K + A+ + L +++ TI AF ++I+ Sbjct: 65 KENLESGKEKSQNILKELEEKYHLDPSLVRNSAQKIYQRFLN--AEIRISTIDAFFQSIL 122 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN---D 201 ++F ++++F + E +K ++ + L+++ + EEL + L N D Sbjct: 123 RKFCWFVGLSANFEV--NEDTKAHQQQLNEGFLSALNNEQLEELSVFITQCLSYDNYTSD 180 Query: 202 EDIETL 207 +E L Sbjct: 181 SILERL 186 >gi|219871258|ref|YP_002475633.1| DNA-dependent helicase II [Haemophilus parasuis SH0165] gi|219691462|gb|ACL32685.1| DNA-dependent helicase II [Haemophilus parasuis SH0165] Length = 727 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 86/221 (38%), Gaps = 42/221 (19%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +L R+ L+ + N S +L Sbjct: 2 DFSLLLDGLNDKQREAVAA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGVENIAESNILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++ S Sbjct: 60 VTFTNKAAAEMRHRIEYTLSQSSD----------------------------------HR 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ V T H+ +++ L+AN+ F I D E ++LI K L LD + Sbjct: 86 LFGMWVGTFHSIANRLLRSHYLDANLPQDFQIMDTEDQQRLI----KRLLKLHNLDEKQF 141 Query: 188 LKKAFYEILEISNDEDIE-TLISDIISNRTALKLIFFFFSY 227 K + D+ + + + + +L+ F+ Y Sbjct: 142 PPKQVAWFINAQKDQGLRAKDLKQSHDDPHSQQLVKFYQIY 182 >gi|260662573|ref|ZP_05863468.1| recombination helicase AddA [Lactobacillus fermentum 28-3-CHN] gi|260553264|gb|EEX26207.1| recombination helicase AddA [Lactobacillus fermentum 28-3-CHN] Length = 1337 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 96/210 (45%), Gaps = 39/210 (18%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN----------AHPSTLLC 67 + +K ++ +D + VSA+AGSGKT +LV+RV++L+ + +L Sbjct: 4 TPSKEQEPAINDRQKDILVSASAGSGKTAVLVERVIQLMETGLSKDAKPSERPNIDDILM 63 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA M R+ + + DE + A++ ++ Sbjct: 64 VTFTTDAAKNMRDRIRRRLVGAT---DEHMKAQVARL----------------------- 97 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + TIH+FCE +++++ ++ F + D+ + + L E+A + TL + + ++ Sbjct: 98 -ALANISTIHSFCEQLIKRYYYVIDLDPQFRLIDDAEQQLLKEQAWQVTLDDWVANPDQ- 155 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTA 217 A +++++ ++E+++ + + A Sbjct: 156 -VGALHQLIDNFGAGNLESVVQALDTEADA 184 >gi|91791848|ref|YP_561499.1| DNA-dependent helicase II [Shewanella denitrificans OS217] gi|91713850|gb|ABE53776.1| ATP-dependent DNA helicase UvrD [Shewanella denitrificans OS217] Length = 722 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 75/198 (37%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +L R+ L+ + P ++L Sbjct: 2 DVSRLLDGLNDEQREAVGA--PLSNMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV ++ + Sbjct: 60 VTFTNKAAAEMRERVEKVAGS--------------------------------------N 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + + T H +++ +AN+ F I D + +L+ K L S+ LD + Sbjct: 82 MGRMWIGTFHGLAHRLLRTHFQDANLPQSFQIIDSDDQLRLL----KRILKSLNLDEKQY 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D+ + Sbjct: 138 PPRQAQGYINGKKDQGLR 155 >gi|15612511|ref|NP_224164.1| putative recombination protein RecB [Helicobacter pylori J99] gi|4156072|gb|AAD07027.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99] Length = 946 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 13/186 (6%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 91 HLSDEILSAEITKIQGKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFCEAIM 144 + E + I + K + A+ + L +++ TI AF ++I+ Sbjct: 65 KENLESEKEKSQNILKELEEKYHLDPSLVRNNAQKIYQRFLN--AEVRISTIDAFFQSIL 122 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN---D 201 ++F ++++F + ++ ++ + + L+++ EEL + L N D Sbjct: 123 RKFCWFVGLSANFEVNEDTEAH--QRQLNEGFLSALNNKQLEELSAFIVQCLSYDNYTSD 180 Query: 202 EDIETL 207 +E L Sbjct: 181 SILERL 186 >gi|208435433|ref|YP_002267099.1| ATP-dependent nuclease [Helicobacter pylori G27] gi|208433362|gb|ACI28233.1| ATP-dependent nuclease [Helicobacter pylori G27] Length = 963 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 13/183 (7%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + + Sbjct: 1 MALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQQEN 60 Query: 94 DEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 E + I + K + A+ + L +++ TI AF ++I+++F Sbjct: 61 LENEKEKSQNILKELEEKYHLDPDLVQNSAQKIYQRFLN--AEIRISTIDAFFQSILRKF 118 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS---NDEDI 204 ++++F + E +K + +S L+++ + EEL + L +D + Sbjct: 119 CWFVGLSANFEV--NEDTKAHQRQLNESFLSALNGEQLEELSVFIAQCLSYDSYTSDSIL 176 Query: 205 ETL 207 E L Sbjct: 177 ERL 179 >gi|254480724|ref|ZP_05093971.1| UvrD/REP helicase domain protein [marine gamma proteobacterium HTCC2148] gi|214039307|gb|EEB79967.1| UvrD/REP helicase domain protein [marine gamma proteobacterium HTCC2148] Length = 1115 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 7/207 (3%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 ++ A D RS V+A AGSGKT +L+QR L LL P +L +T T+ AAAEM RV Sbjct: 8 DRAEALDVVRSFCVTAPAGSGKTELLIQRFLALLARVKRPEQVLAITFTRKAAAEMRERV 67 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 L+ + A D++ + + + + + + L ++TI +FC Sbjct: 68 LQALQA---ARDKVAVEGEHQRVTRDLALAALESSDREQWHLARDISRLNIKTIDSFCAG 124 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 + +Q P+ + D + +L +EA L SI + E +L N+ Sbjct: 125 LTRQMPILSRFGGQAQAVD--DATELYKEAVSE-LFSIAGTSRSEATDLDILLLHFDNNW 181 Query: 203 D-IETLISDIISNRTALKLIFFFFSYL 228 D + L+ ++ R L Sbjct: 182 DRLRELLVTMLGKRDQWHLYMGAKRSP 208 >gi|262273203|ref|ZP_06051019.1| ATP-dependent DNA helicase UvrD/PcrA [Grimontia hollisae CIP 101886] gi|262222781|gb|EEY74090.1| ATP-dependent DNA helicase UvrD/PcrA [Grimontia hollisae CIP 101886] Length = 725 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 78/198 (39%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ID ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ Sbjct: 2 DVSHLIDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLVHRIAWLMQVEYASPFSVMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM R+ +++ T Sbjct: 60 VTFTNKAAAEMRGRIEQLMQG--------------------------------------T 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GL T H C I++ L+AN+ F I D + ++L+ + + + LD Sbjct: 82 ASGLWCGTFHGLCHRILRAHHLDANLPQDFQILDSDDQQRLL----RRLIKAQNLDEKHW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PARQASWYINAKKDEGLR 155 >gi|95929583|ref|ZP_01312325.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684] gi|95134280|gb|EAT15937.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684] Length = 1101 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 110/230 (47%), Gaps = 9/230 (3%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 TIDL+ + LA DPTRS V A AGSGKT +L+QR L LL P +L +T T+ Sbjct: 3 TIDLVD--APARRLAVDPTRSCLVRAPAGSGKTELLIQRFLALLATVPRPDAILAITFTR 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RVL+ + A + A + + + + + L + + P L+ Sbjct: 61 KAAAEMRQRVLDALLAAQQPLPD--QAGEHQRTTYRLATAVLQRNETLAWNLFDHPQQLQ 118 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKA 191 +QTI +F +++ + P + + AI+D Q ++L +A + LA+ D + Sbjct: 119 IQTIDSFNASLVARMPWLSRLGGLPAISD--QPRQLYRQAVRQLLAASRTTDKLNRGLRQ 176 Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 L+ +D E L+ + L+ +F + R ++++L ++ Sbjct: 177 LQYHLDNRSDRLEELLVQLLERRDQWLRHLFG--DQVRPRDELQQALEAV 224 >gi|160879499|ref|YP_001558467.1| UvrD/REP helicase [Clostridium phytofermentans ISDg] gi|160428165|gb|ABX41728.1| UvrD/REP helicase [Clostridium phytofermentans ISDg] Length = 807 Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 78/219 (35%), Gaps = 45/219 (20%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76 S ++ + A AGSGKT +L R+ L+ N +P ++ LT T AA Sbjct: 6 SLNPEQRRAVEHDRGPMLILAGAGSGKTRVLTHRIAYLIEERNVNPYQIMALTFTNKAAK 65 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV +I+ + + V T Sbjct: 66 EMRERVDKIVGYGAE--------------------------------------NIWVSTF 87 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+ C I+++F +F I D + K LI E L + +D + ++ F + Sbjct: 88 HSTCVRILRRFIETLGYDRNFTIYDTDDQKTLIRE----VLKFLQIDTKQTKERVFLSAI 143 Query: 197 EISNDEDI--ETLISDIISNRTALKLIFFFFSYLWRRKI 233 + DE I E + + +K+ + Y R K Sbjct: 144 SSAKDEGISPEEFELSALGDYNKMKISNVYKEYQRRLKT 182 >gi|146313611|ref|YP_001178685.1| DNA-dependent helicase II [Enterobacter sp. 638] gi|145320487|gb|ABP62634.1| ATP-dependent DNA helicase UvrD [Enterobacter sp. 638] Length = 720 Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A+ + V A AGSGKT +LV R+ L + N+ P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAAT--RTNMLVLAGAGSGKTRVLVHRIAWLQSVENSSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIAQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGQKDEGLR 155 >gi|295095174|emb|CBK84264.1| ATP-dependent DNA helicase UvrD [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 724 Score = 148 bits (373), Expect = 8e-34, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + + + AS + V A AGSGKT +LV R+ L + N P +++ Sbjct: 6 DVSYLLDSLNDKQRDAVAAS--RTNLLVLAGAGSGKTRVLVHRIAWLQSVENCSPYSIMA 63 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 64 VTFTNKAAAEMRHRIAQLMGT--------------------------------------S 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 86 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 141 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 142 PPRQAMWYINGQKDEGLR 159 >gi|218288826|ref|ZP_03493077.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1] gi|218240915|gb|EED08092.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1] Length = 613 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 20/183 (10%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP--STLLCLTHTKAA 74 ++ ++ ++ + VSA AGSGKT +L +R+ L + LL +T T+AA Sbjct: 3 VNWSQEQEQAIRARGTNLVVSAGAGSGKTAVLAERIASLAEEDPKLRMDELLVMTFTEAA 62 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ + + ++ D +KAR + + ++ Sbjct: 63 AEEMRARIGRRLAERAAEWEKA---------------GDSAKARR-FRRLAQRVQDAQIS 106 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML--DNNEELKKAF 192 TIH+FC ++++ +EA + F + E+ L+ EA ++TL + L+ A Sbjct: 107 TIHSFCLSLLRDHAVEAGLVPGFRVLSGEEDAVLLREAAQATLDEWSRHPERGAPLRDAL 166 Query: 193 YEI 195 + Sbjct: 167 SAL 169 >gi|229918202|ref|YP_002886848.1| recombination helicase AddA [Exiguobacterium sp. AT1b] gi|229469631|gb|ACQ71403.1| recombination helicase AddA [Exiguobacterium sp. AT1b] Length = 1205 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 81/223 (36%), Gaps = 34/223 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKA 73 + T + VSA AGSGKT +LV+R+ LL +L +T T A Sbjct: 3 VKWTNDQFAAIEARGSHVLVSAAAGSGKTAVLVERLSSRLLDETDELTADRMLVVTFTNA 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ + + + P + K R +L L + Sbjct: 63 AAAEMKRRIAKAL---------------EEALRDDPTNEYVRKQRQMLNRAL-------I 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH+FC ++++ ++ F IA+E L ++ + L + + Sbjct: 101 TTIHSFCLEVIRENYYLLDLDPAFKIAEERDLVLLQDDVLEEVLEEEYGKQDTDFFALVD 160 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 D +IE LI L L + + ++K Sbjct: 161 AYTSDRGDSEIEDLI---------LGLYHYARTLPNPDAYLDK 194 >gi|223936289|ref|ZP_03628202.1| recombination helicase AddA [bacterium Ellin514] gi|223895151|gb|EEF61599.1| recombination helicase AddA [bacterium Ellin514] Length = 1211 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 33/229 (14%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 +S T ++Q + V A AG+GKT LV+R L L+ P +L +T T A Sbjct: 1 MSFTPAQQEAIIARG-NVLVVAGAGTGKTRTLVERCLHCLVEEKPPTSLDEILMVTFTDA 59 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ + + L L + Sbjct: 60 AAAEMRQRIRARLEQELAKHTDDLR----------------------WTEQLTIFDTAHI 97 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T+H+FC +++Q E + + EE+++ L +E ++ L S + E +A Sbjct: 98 GTLHSFCLQLVRQHFYELELDPQLTVLPEEEARLLADETLENLLQSHYA-GDAEGAEAVQ 156 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 +++++ + I ++ L+L + + ++ L A Sbjct: 157 QLIQVQG-RGWDQPIRTLV-----LRLHHYTQTLRDPADWLKSQLEMFA 199 >gi|160945992|ref|ZP_02093218.1| hypothetical protein FAEPRAM212_03525 [Faecalibacterium prausnitzii M21/2] gi|158443723|gb|EDP20728.1| hypothetical protein FAEPRAM212_03525 [Faecalibacterium prausnitzii M21/2] Length = 1228 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 54/228 (23%), Positives = 91/228 (39%), Gaps = 36/228 (15%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 + T ++Q +D + VSA AGSGKT +L +R ++L+ HP LL +T Sbjct: 1 MSGPKWTPAQQAAIADRGGALLVSAAAGSGKTAVLTERAVQLITDPEHPVNADRLLIVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAAE+ R+ + + S L +P + + + R LL Sbjct: 61 TNAAAAELRARIGQALLHRSQL---------------QPGNAMLRRQRMLLQRAP----- 100 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + TI AFC ++ + +I FA AD + L A TL + D + Sbjct: 101 --ICTIDAFCLNLLHKHFQALDIPPDFAPADPGTVQLLRGAALAETLENAYRDPD----- 153 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 F ++ + D I L++ F + + +++ L Sbjct: 154 -FCAFADLYGKGRTDKPAGDAI-----LQIYDFLRALPDYDRKLDEFL 195 >gi|163748667|ref|ZP_02155920.1| DNA helicase II [Shewanella benthica KT99] gi|161331777|gb|EDQ02581.1| DNA helicase II [Shewanella benthica KT99] Length = 721 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 74/198 (37%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ ++ + P S V A AGSGKT +L R+ L+ + P ++L Sbjct: 2 DVSSLLDGLND--EQRSVVGAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV ++ + Sbjct: 60 VTFTNKAAAEMRERVEKVSGS--------------------------------------N 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + + T H +++ +AN+ F I D + +LI K L S+ LD + Sbjct: 82 MGRMWIGTFHGLAHRLLRTHYKDANLPQTFQIIDSDDQLRLI----KRILKSLHLDEKQY 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D+ + Sbjct: 138 PPRQAQGYINGKKDQGLR 155 >gi|227514157|ref|ZP_03944206.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus fermentum ATCC 14931] gi|227087528|gb|EEI22840.1| ATP-dependent deoxyribonuclease, subunit A [Lactobacillus fermentum ATCC 14931] Length = 1337 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 96/210 (45%), Gaps = 39/210 (18%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN----------AHPSTLLC 67 + +K ++ +D + VSA+AGSGKT +LV+RV++L+ + +L Sbjct: 4 TPSKEQEPAINDRQKDILVSASAGSGKTAVLVERVIQLMETGLSKDAKPSERPNIDDILM 63 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA M R+ + + DE + A++ ++ Sbjct: 64 VTFTTDAAKNMRDRIRRRLVGAT---DEHMKAQVARL----------------------- 97 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + TIH+FCE +++++ ++ F + D+ + + L E+A + TL + + ++ Sbjct: 98 -ALANISTIHSFCEQLIKRYYYVIDLDPQFRLIDDAEQQLLKEQAWQVTLDDWVANPDQ- 155 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTA 217 A +++++ ++E+++ + + A Sbjct: 156 -VGALHQLIDNFGAGNLESVVQALDTEADA 184 >gi|308062822|gb|ADO04710.1| putative recombination protein RecB [Helicobacter pylori Cuz20] Length = 949 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 12/178 (6%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW- 89 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 90 -SHLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEA 142 +L DE + I + K ++ A+ + L +++ TI AF ++ Sbjct: 65 KENLEDEKEKEKSQNILKELEEKYHLNPSFVQNSAQEIYQRFLN--AEMRISTIDAFFQS 122 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 I+++F ++++F + E +K ++ S L+++ + EEL + L N Sbjct: 123 ILRKFCWFVGLSANFEV--NEDTKAHQQQLNASFLSALNNEQLEELSVFITQCLSHDN 178 >gi|300173052|ref|YP_003772218.1| recombination helicase AddA [Leuconostoc gasicomitatum LMG 18811] gi|299887431|emb|CBL91399.1| recombination helicase AddA [Leuconostoc gasicomitatum LMG 18811] Length = 1242 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 82/219 (37%), Gaps = 27/219 (12%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + T ++Q + + V+A+AGSGKT +L++R+++ +L+ L +T T AAA E Sbjct: 4 TFTINQQRAVEETGHNILVAASAGSGKTTVLIERLIQKILSGTSVENFLIVTFTNAAAKE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ + +D + + L L + TI Sbjct: 64 MRERLEAALEKRMKTADSQM--------------------KRFLQEQLLLLPAANISTID 103 Query: 138 AFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 A+ +++ + + F + D + L ++ AS +++E + Sbjct: 104 AYALRLIENYYHVIGLDPQFRLLSDTAERDLLRQDVLDEVFASFYEESHENHADFLALVT 163 Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 S+ D L + LKL F + ++ Sbjct: 164 NFSSPSDDTQL------KQIVLKLADFAEARPDGDAWLQ 196 >gi|310643059|ref|YP_003947817.1| recombination helicase adda [Paenibacillus polymyxa SC2] gi|309248009|gb|ADO57576.1| Recombination helicase AddA [Paenibacillus polymyxa SC2] Length = 1339 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 92/221 (41%), Gaps = 32/221 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75 + + S+ + V+A AGSGKT +LV+R++R ++ LL T TKAAA Sbjct: 18 WSDDQWRAISESGNNMLVAAAAGSGKTAVLVERIIRKIVDPRLGFSVDRLLVATFTKAAA 77 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ E + ++ ++P + + LL + T Sbjct: 78 AEMRQRIREAL---------------ERVLEQEPESEHVRRQLSLL-------NRASITT 115 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC ++++ + F I +E +++ L +E + ++E F + Sbjct: 116 LHSFCMEVIRRHYQAIPLDPGFRIMNEHETELLRQELLEELFEEKYEAHDE--GSTFRRL 173 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ + E + + ++ +L F S+ W + + Sbjct: 174 VDWFSGERTDDAMYVLVQ-----RLYDFSQSHPWPEHWLRE 209 >gi|218533282|ref|YP_002424097.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4] gi|218525585|gb|ACK86169.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4] Length = 1117 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 7/166 (4%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 ++ L + RS V A AGSGKT ++ RV +L + P ++ +T T+ AA Sbjct: 7 GLADAAQRALAINAHDRSLLVEAGAGSGKTALMAGRVAMMLASGTAPGSIAAVTFTELAA 66 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +E+ RV E+ I +++ PN +S R LL+ E + T Sbjct: 67 SELLERVGEVTGRL------IEGQVPEEMRIALPNGLSVS-QRQLLVEAAEHLDEMACTT 119 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 IH FC+ +++ +P+EA+I + DE ++ + ++ + L + Sbjct: 120 IHGFCQRLVKPYPVEADIDPGARVVDEAEADGIFQDLRDGWLRECL 165 >gi|317181241|dbj|BAJ59027.1| helicase [Helicobacter pylori F32] Length = 938 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 15/188 (7%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW- 89 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 90 -SHLSDEILSAEITKIQGKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFCEA 142 +L DE + I + K + +A+ + L +++ TI AF ++ Sbjct: 65 KENLEDEKEKEKSQNILKELEEKYRLDPSFVQNRAQEIYQRFLN--AEIRISTIDAFFQS 122 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS--- 199 I+++F + ++F + E +K ++ +S L+++ + EEL + L Sbjct: 123 ILRKFCWFVGLRANFEV--NEDTKAHQQQLNESFLSALDKEQLEELSVFITQCLSYDSYT 180 Query: 200 NDEDIETL 207 +D +E L Sbjct: 181 SDSVLERL 188 >gi|326317369|ref|YP_004235041.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374205|gb|ADX46474.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 1182 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 10/202 (4%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 +A DP RS V A AG+GKT +LV R+LR LL P +L +T TK AA EM R+LE Sbjct: 24 AIACDPARSVAVEACAGAGKTWMLVSRILRALLEGCEPHEILAITFTKKAAGEMRQRLLE 83 Query: 85 IITAWSHLSDEILSAEITK--IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + A+S L E+ I ++ + ++ + L + +L ++++T H++ A Sbjct: 84 WLEAFSRTPLPALRGELQARGIPAEQATEEACARLQGLFLQVLGAGRPVQIRTFHSWFAA 143 Query: 143 IMQQFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 ++ PL + H+ + +++ + + L + D L F + + + Sbjct: 144 LLGTAPLAVLQSRGLPLHYELLEDD--AEAVRRVWPLFLQQVAADAG--LGGDFADSVSL 199 Query: 199 SNDEDIETLISDIISNRTALKL 220 + +S R +L Sbjct: 200 HGRSQTRKALESALSKRVEFEL 221 >gi|212637392|ref|YP_002313917.1| DNA-dependent helicase II [Shewanella piezotolerans WP3] gi|212558876|gb|ACJ31330.1| DNA helicase II [Shewanella piezotolerans WP3] Length = 721 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 70/198 (35%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P +L Sbjct: 2 DVSSLLDGLNDKQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYAILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV ++ Sbjct: 60 VTFTNKAAKEMRERVEKVAGG--------------------------------------N 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + + T H +++ EAN+ F I D + +LI K L S+ LD + Sbjct: 82 MSRMWIGTFHGLAHRLLRTHYKEANLPQSFQILDSDDQLRLI----KRILKSLNLDEKQY 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D + Sbjct: 138 PPRHAQGYINGKKDLGLR 155 >gi|296105303|ref|YP_003615449.1| DNA-dependent helicase II [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059762|gb|ADF64500.1| DNA-dependent helicase II [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 720 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + + + AS + V A AGSGKT +LV R+ L + N P +++ Sbjct: 2 DVSYLLDSLNDKQRDAVAAS--RTNLLVLAGAGSGKTRVLVHRIAWLQSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIAQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGQKDEGLR 155 >gi|257440573|ref|ZP_05616328.1| ATP-dependent exoDNAse beta subunit [Faecalibacterium prausnitzii A2-165] gi|257196896|gb|EEU95180.1| ATP-dependent exoDNAse beta subunit [Faecalibacterium prausnitzii A2-165] Length = 1233 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 36/223 (16%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T +++ D + VSA AGSGKT +L +R +RL+ HP LL +T T AAA Sbjct: 6 WTPAQRAAIEDRGGALLVSAAAGSGKTAVLTERAVRLITDPEHPVDADRLLIVTFTNAAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AE+ R+ + + S +P + + R LL + T Sbjct: 66 AELRARIGQALLKRSQ---------------AEPGNGALRRQRMLLQRAP-------ICT 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I AFC ++++ +I F+ AD + L A TL + D + F Sbjct: 104 IDAFCLDLLRKHFQALDIPPDFSPADPGSVELLRASALSETLENAYRDPD------FCAF 157 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 ++ + + T L + F + K +++ L Sbjct: 158 ADLYGKGRTDRAAGE-----TILHVYDFLRALPDYDKKLDEFL 195 >gi|148212|gb|AAA67609.1| DNA helicase II [Escherichia coli str. K-12 substr. MG1655] Length = 720 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + N P +++ Sbjct: 2 DVSYLLDSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIGQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H ++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHXLAHRLLXAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINSQKDEGLR 155 >gi|291544540|emb|CBL17649.1| recombination helicase AddA, Firmicutes type [Ruminococcus sp. 18P13] Length = 1187 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 48/202 (23%), Positives = 85/202 (42%), Gaps = 26/202 (12%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTK 72 + + T +Q + S VSA AGSGKT +LV+R++R L HP + L +T T Sbjct: 1 MRNWTPEQQQAINARGASFLVSAAAGSGKTSVLVERLIRQLTDPEHPVSAARLAVVTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R L +T+ + P + + + L K Sbjct: 61 DAAAEMKSR---------------LEHALTQCIAQDPRNVWLRQQQSQLQCA-------K 98 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK-KA 191 + TIH+FC +++ E +IT F I +E + ++ + + D + + Sbjct: 99 ICTIHSFCFDLIRDHCAELDITPTFRILEETEMNMMVSRGLADIMEAWYADPARQGDMQL 158 Query: 192 FYEILEISNDEDIETLISDIIS 213 + D ++E L++++ Sbjct: 159 LCDRFSGRTDAELENLLTELYR 180 >gi|261343070|ref|ZP_05970928.1| DNA helicase II [Enterobacter cancerogenus ATCC 35316] gi|288314635|gb|EFC53573.1| DNA helicase II [Enterobacter cancerogenus ATCC 35316] Length = 720 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 80/198 (40%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + + + A+ + V A AGSGKT +LV R+ L + N P +++ Sbjct: 2 DVSYLLDSLNDKQRDAVAAT--RTNMLVLAGAGSGKTRVLVHRIAWLQSVENCSPYSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 60 VTFTNKAAAEMRHRIAQLMGT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ ++AN+ F I D E +L+ K + ++ LD + Sbjct: 82 QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQAMWYINGQKDEGLR 155 >gi|307638220|gb|ADN80670.1| putative ATP-dependent helicase [Helicobacter pylori 908] gi|325996814|gb|ADZ52219.1| helicase [Helicobacter pylori 2018] gi|325998406|gb|ADZ50614.1| putative ATP-dependent helicase [Helicobacter pylori 2017] Length = 946 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 91/208 (43%), Gaps = 16/208 (7%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIM 144 + E + I + K + A+ + L +++ TI AF ++I+ Sbjct: 65 KENLESGKEKSQNILKELEEKYHLDPSLVRNSAQKIYQRFLN--AEIRISTIDAFFQSIL 122 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204 ++F ++++F + ++ ++ + + L+++ + EEL + L Sbjct: 123 RKFCWFVGLSANFEVNEDTEAH--QRQLNEGFLSALNSEQLEELSVFIVQCLSY------ 174 Query: 205 ETLISDIISNRTALKLIFFFFSYLWRRK 232 E+ SD I R + +++ Sbjct: 175 ESYTSDSILERLRFLKNKLYLFDPNKKE 202 >gi|91228031|ref|ZP_01262116.1| DNA helicase II [Vibrio alginolyticus 12G01] gi|269964541|ref|ZP_06178780.1| DNA helicase II [Vibrio alginolyticus 40B] gi|91188260|gb|EAS74559.1| DNA helicase II [Vibrio alginolyticus 12G01] gi|269830668|gb|EEZ84888.1| DNA helicase II [Vibrio alginolyticus 40B] Length = 724 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ + G Sbjct: 63 FTNKAAAEMRGRIEELMMG--------------------------------------SAG 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD + Sbjct: 85 GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----KRLIKAQNLDEKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 RQVAWWINGKKDEGLR 156 >gi|71279005|ref|YP_266848.1| DNA-dependent helicase II [Colwellia psychrerythraea 34H] gi|71144745|gb|AAZ25218.1| DNA helicase II [Colwellia psychrerythraea 34H] Length = 724 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 78/198 (39%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + + + A P ++ + A AGSGKT +LVQR+ L+ + ++L Sbjct: 2 DVSELLDSLNDKQRDVVAA--PKQNMLILAGAGSGKTRVLVQRIAWLMQVEGISSHSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV ++ Sbjct: 60 VTFTNKAAAEMRARVEQVTNG--------------------------------------N 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ + T H +++ EAN+ F + D + +LI+ +S + LD + Sbjct: 82 THGMWIGTFHGLAHRLLRMHFQEANLPQSFQVLDSDDQLRLIKRIVRS----LELDEKKW 137 Query: 188 LKKAFYEILEISNDEDIE 205 K F + DE + Sbjct: 138 PPKQFVWYINGKKDEGLR 155 >gi|88601852|ref|YP_502030.1| UvrD/REP helicase [Methanospirillum hungatei JF-1] gi|88187314|gb|ABD40311.1| UvrD/REP helicase [Methanospirillum hungatei JF-1] Length = 1149 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 27/203 (13%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 ++ T + S S V+A AG+GKT +LV++ L L+ +L LT T AA Sbjct: 1 MAATPRQLEAISRHDVSMVVTAGAGTGKTFVLVEKYLNLVQDQGYRIRDVLALTFTDKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM RV + I + + E V T Sbjct: 61 AEMKERVRKTIAERLKDDPDN----------------------QVWKDAHEELVIAPVMT 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H+FC I+++F +EA + F I DE Q+ + EA ++ + EE++++ + Sbjct: 99 FHSFCAQILREFAIEAGLDPGFVILDEGQALAVEREAFETLIRK----PPEEIQESLIRL 154 Query: 196 LEISNDEDIETLISDIISNRTAL 218 L + +++ + N A Sbjct: 155 LAQIEKFQVNQIMTTLAKNTDAF 177 >gi|308183694|ref|YP_003927821.1| putative recombination protein RecB [Helicobacter pylori PeCan4] gi|308065879|gb|ADO07771.1| putative recombination protein RecB [Helicobacter pylori PeCan4] Length = 945 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 13/186 (6%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIM 144 + E + I + K ++ A+ + L +++ TI AF ++I+ Sbjct: 65 KENLENEKEKSQNILKELEEKYHLNPDLVQNSAQKIYQRFLN--AEIRISTIDAFFQSIL 122 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL---EISND 201 ++F ++++F + E +K ++ + L+++ + EEL + L ++D Sbjct: 123 RKFCWFVGLSANFEV--NEDTKAHQQQLNEGFLSALNNEQLEELSVFIAQCLSHESYTSD 180 Query: 202 EDIETL 207 +E L Sbjct: 181 SILERL 186 >gi|325847046|ref|ZP_08169872.1| putative ATP-dependent nuclease subunit A [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481018|gb|EGC84063.1| putative ATP-dependent nuclease subunit A [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 1021 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 48/218 (22%), Positives = 92/218 (42%), Gaps = 32/218 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAE 77 T ++ ++ VSA AGSGKT +LV RV+ L++ P ++ +T T A+ E Sbjct: 6 PTDDQKKAIEIRDKNIIVSAAAGSGKTRVLVDRVVSLMIEEKIPIKNMIIVTFTNKASVE 65 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ E ++ L DE + + K Q K N ++T+H Sbjct: 66 MKDRIREKLSEL--LDDEKIDSSFVKKQIKAIND-------------------AFIKTLH 104 Query: 138 AFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 +FC ++++ ++ ++ F IA + + L ++A + N++E + Sbjct: 105 SFCADMLRENFYLSDNLSPSFKIAADSKQALLRKDAIDELFENEYEKNDQEFIDFLHNFA 164 Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 + +D+D + ++ D L F S + I Sbjct: 165 KEKDDKDAKEIVLD---------LYDFSKSQVDPENWI 193 >gi|197334239|ref|YP_002154837.1| DNA helicase II [Vibrio fischeri MJ11] gi|197315729|gb|ACH65176.1| DNA helicase II [Vibrio fischeri MJ11] Length = 733 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 79/198 (39%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ Sbjct: 2 DVSFLLDGLNDKQREAVAA--PLENMLVLAGAGSGKTRVLVHRIAWLMQIEQASPFSIMS 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM R+ E++ + Sbjct: 60 VTFTNKAAAEMRGRIEELMHG--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ T H C I++ L+A + F I D + ++L+ K + + LD+ Sbjct: 82 AGGMWNGTFHGICHRILRAHYLDAKLPEGFQIIDSDDQQRLL----KRLIKAQNLDDKNW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PARQAAWFINGKKDEGLR 155 >gi|225872585|ref|YP_002754040.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium capsulatum ATCC 51196] gi|225792506|gb|ACO32596.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium capsulatum ATCC 51196] Length = 1201 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 107/240 (44%), Gaps = 24/240 (10%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLC 67 SE L ++E+ A + TRS V A AGSGKT +L +R L LL P +L Sbjct: 18 ASEMRPLHPVDQAERESAIEVTRSVLVQAPAGSGKTDLLTRRFLALLAEGHVEGPEQILA 77 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T+AA AEM R+L+ + + ++ E K+ + ++ +LE Sbjct: 78 ITFTRAATAEMRARILKDLRDVASTDEQPGENERRKLARRALARARER-----GWPLLEQ 132 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 P L+V+TI + C I PL A + + D + L EA + T+ + D N+E Sbjct: 133 PALLQVETIDSLCMRIAHGQPLLARLGGQLSPVD--DASALYLEAARRTIRHLGGD-NQE 189 Query: 188 LKKAFYEILEISNDE--DIETLISDIISNRTALKLIF------------FFFSYLWRRKI 233 L A +L + + D E L++D++ R + F F+ +R ++ Sbjct: 190 LSAAIQHLLSLRDTHLGDCEQLMADMLRQRNGWQEHFPLAGDVDWEDVRFYLEQPFRDEV 249 >gi|167855351|ref|ZP_02478118.1| DNA-dependent helicase II [Haemophilus parasuis 29755] gi|167853499|gb|EDS24746.1| DNA-dependent helicase II [Haemophilus parasuis 29755] Length = 727 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 85/221 (38%), Gaps = 42/221 (19%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +L R+ L+ + N S +L Sbjct: 2 DFSLLLDGLNDKQREAVAA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGVENIAESNILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM HR+ ++ S Sbjct: 60 VTFTNKAATEMRHRIEYTLSQSSD----------------------------------HR 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ V T H+ +++ L+AN+ F I D E ++LI K L LD + Sbjct: 86 LFGMWVGTFHSIANRLLRSHYLDANLPQDFQIMDTEDQQRLI----KRLLKLHNLDEKQF 141 Query: 188 LKKAFYEILEISNDEDIE-TLISDIISNRTALKLIFFFFSY 227 K + D+ + + + + +L+ F+ Y Sbjct: 142 PPKQVAWFINAQKDQGLRAKDLKQSHDDPHSQQLVKFYQIY 182 >gi|59710675|ref|YP_203451.1| DNA-dependent helicase II [Vibrio fischeri ES114] gi|59478776|gb|AAW84563.1| DNA-dependent ATPase I and helicase II [Vibrio fischeri ES114] Length = 733 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 79/198 (39%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ Sbjct: 2 DVSFLLDGLNDKQREAVAA--PLENMLVLAGAGSGKTRVLVHRIAWLMQIEQASPFSIMS 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM R+ E++ + Sbjct: 60 VTFTNKAAAEMRGRIEELMHG--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ T H C I++ L+A + F I D + ++L+ K + + LD+ Sbjct: 82 AGGMWNGTFHGICHRILRAHYLDAKLPEGFQIIDSDDQQRLL----KRLIKAQNLDDKNW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PARQAAWFINGKKDEGLR 155 >gi|153834693|ref|ZP_01987360.1| DNA helicase II [Vibrio harveyi HY01] gi|148868889|gb|EDL67949.1| DNA helicase II [Vibrio harveyi HY01] Length = 723 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 4 SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ + G Sbjct: 62 FTNKAAAEMRGRIEELMMG--------------------------------------SAG 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD + Sbjct: 84 GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----KRLIKAQNLDEKQWPA 139 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 140 RQVAWWINGKKDEGLR 155 >gi|212696888|ref|ZP_03305016.1| hypothetical protein ANHYDRO_01451 [Anaerococcus hydrogenalis DSM 7454] gi|212676178|gb|EEB35785.1| hypothetical protein ANHYDRO_01451 [Anaerococcus hydrogenalis DSM 7454] Length = 1021 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 92/218 (42%), Gaps = 32/218 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAE 77 T ++ ++ VSA AGSGKT +LV RV+ L++ P ++ +T T A+ E Sbjct: 6 PTDDQKKAIEIRNKNIIVSAAAGSGKTRVLVDRVVSLMIEEKIPIKNMIIVTFTNKASVE 65 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ E ++ L DE + + K Q K N ++T+H Sbjct: 66 MKDRIREKLSEL--LDDEKIDSSFVKKQIKAIND-------------------AFIKTLH 104 Query: 138 AFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 +FC ++++ ++ ++ F IA + + L ++A + N++E + Sbjct: 105 SFCADMLRENFYLSDNLSPSFKIAADSKQALLRKDAIDELFENEYEKNDQEFIDFLHNFA 164 Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 + +D+D + ++ D+ F S + I Sbjct: 165 KEKDDKDAKEIVLDL---------YDFSKSQVDPENWI 193 >gi|156972692|ref|YP_001443599.1| DNA-dependent helicase II [Vibrio harveyi ATCC BAA-1116] gi|156524286|gb|ABU69372.1| hypothetical protein VIBHAR_00351 [Vibrio harveyi ATCC BAA-1116] Length = 724 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ + G Sbjct: 63 FTNKAAAEMRGRIEELMMG--------------------------------------SAG 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD + Sbjct: 85 GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----KRLIKAQNLDEKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 RQVAWWINGKKDEGLR 156 >gi|317178260|dbj|BAJ56049.1| helicase [Helicobacter pylori F16] Length = 947 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 10/176 (5%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 91 HLSDEILSAEITKIQGKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFCEAIM 144 + E + I + K + A+ + L +++ TI AF ++I+ Sbjct: 65 KENLENEKEKSQNILKELEEKYRLDPSFVQNNAQKIYQRFLN--AEIRISTIDAFFQSIL 122 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 ++F ++++F + E +K ++ +S L+++ EEL + L + Sbjct: 123 RKFCWFVGLSANFEV--NEDTKAYQQQLNESFLSALNNKQLEELSVFIAQCLSYDS 176 >gi|27364389|ref|NP_759917.1| DNA-dependent helicase II [Vibrio vulnificus CMCP6] gi|37681375|ref|NP_935984.1| DNA-dependent helicase II [Vibrio vulnificus YJ016] gi|27360508|gb|AAO09444.1| DNA helicase II [Vibrio vulnificus CMCP6] gi|37200127|dbj|BAC95955.1| DNA helicase II [Vibrio vulnificus YJ016] Length = 724 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 48/229 (20%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ + Sbjct: 63 FTNKAAAEMRGRIEELMMG--------------------------------------SAS 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD+ + Sbjct: 85 GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----KRLIKAQNLDDKQWPA 140 Query: 190 KAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235 + + DE + D + +T L+L + R +++ Sbjct: 141 RQVAWWINGKKDEGLRPAHIDAYHDPVTKTYLQLYTAYQEACDRAGLVD 189 >gi|284006602|emb|CBA71863.1| DNA helicase II / ATP-dependent DNA helicase [Arsenophonus nasoniae] Length = 723 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 79/198 (39%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 S ++ ++ + E + A P + + A AGSGKT +LV R+ LL + P +++ Sbjct: 5 NASYLLENLNDKQREAVAA--PRTNMLILAGAGSGKTRVLVHRIAWLLAVDKVSPFSIMA 62 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++ + Sbjct: 63 VTFTNKAAAEMRHRINALLGS--------------------------------------D 84 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ L+AN+ F I D + +L+ + + +I LD ++ Sbjct: 85 QGGMWVGTFHGLAHRLLRAHYLDANLVQDFQILDSDDQYRLL----RRIIKAINLDESKW 140 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 PPRQAMWYINAKKDEGLR 158 >gi|153839103|ref|ZP_01991770.1| DNA helicase II [Vibrio parahaemolyticus AQ3810] gi|149747399|gb|EDM58363.1| DNA helicase II [Vibrio parahaemolyticus AQ3810] Length = 723 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 48/229 (20%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 4 SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ + Sbjct: 62 FTNKAAAEMRGRIEELMMG--------------------------------------SAS 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD + Sbjct: 84 GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----KRLIKAQNLDEKQWPA 139 Query: 190 KAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235 + + DE + D + +T L+L + R +++ Sbjct: 140 RQVAWWINGKKDEGLRPAHIDAYHDPVTKTYLQLYTAYQEACDRAGLVD 188 >gi|54294699|ref|YP_127114.1| hypothetical protein lpl1776 [Legionella pneumophila str. Lens] gi|53754531|emb|CAH16015.1| hypothetical protein lpl1776 [Legionella pneumophila str. Lens] Length = 1076 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 6/217 (2%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 ++ A+DP S V A AGSGKT IL QR LRLL P ++ LT T+ AA+EM R Sbjct: 7 EQRRQATDPAESFIVQAPAGSGKTEILTQRFLRLLSTVQSPEQIIALTFTRKAASEMRER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 +++ + + + + + + + K + + + +LE P LK+ TI + C+ Sbjct: 67 IVQALHMAASNQPAVSAHQQSTL---NFAKQALQRNKQYQWDLLEQPNRLKIITIDSLCQ 123 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 +I + PL ++ I++ S I A+ +I +E K ++ + Sbjct: 124 SINRAIPLLEKQVAYPDISETPDSHY-ISAARCCIQYAIATPEYQEAIKTLLLHVDNKQE 182 Query: 202 EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 I+ L ++S R F + ++ E++L Sbjct: 183 RLIQ-LFQTLLSQRDQWLPTLFL-AREQKKSTFEQAL 217 >gi|222110700|ref|YP_002552964.1| uvrd/rep helicase [Acidovorax ebreus TPSY] gi|221730144|gb|ACM32964.1| UvrD/REP helicase [Acidovorax ebreus TPSY] Length = 1101 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 90/201 (44%), Gaps = 9/201 (4%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 +A DP RS V A AG+GKT +LV R+LR LL P +L +T TK AA EM R+ E Sbjct: 24 AIACDPQRSVAVEACAGAGKTWMLVSRMLRALLDGCAPHEILAITFTKKAAGEMRQRLQE 83 Query: 85 IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + ++ L E+ + G + + + L L+ ++++T H++ A+ Sbjct: 84 WLQEFAAKPLPDLEKELIARGIGPQRALEKREQLQKLYRQTLDAGRPVQIRTFHSWFAAL 143 Query: 144 MQQFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 + PL + +H+ + +++ + + E + LA++ D L+ + + Sbjct: 144 LGTAPLAVLEQQGLPAHYDLLEDD--AEAVREVWRPYLAAVAQD--AALRADYEACVAHH 199 Query: 200 NDEDIETLISDIISNRTALKL 220 + ++ R L Sbjct: 200 GRSQTHKALEGALAKRVEFAL 220 >gi|297538865|ref|YP_003674634.1| Exodeoxyribonuclease V [Methylotenera sp. 301] gi|297258212|gb|ADI30057.1| Exodeoxyribonuclease V [Methylotenera sp. 301] Length = 1158 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 99/211 (46%), Gaps = 6/211 (2%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 T+DL ++ A + S V A AG+GKT +L QR L+LL P ++ Sbjct: 6 NSDLSTLDLNQMDTLNRVRALE-LASFIVEAPAGAGKTELLTQRYLKLLATVNEPEEIIA 64 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T AAAEM +R+ + + + ++ + A K++ ++ + + ++ I+ Sbjct: 65 LTFTNKAAAEMRNRI---LLSLENAQNQTVEAAAHKLKTRELANAALLQSNVKSWDIINQ 121 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 P L++ TI A C ++ +Q PL + A++D+ S + EA + +A I+ + + Sbjct: 122 PSRLRILTIDALCSSLTRQMPLLSKFGGQPAVSDDTDSHYI--EASRRAIAHIVHETKPD 179 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTAL 218 +N E + L++ +++ R Sbjct: 180 DTVIVALSYLDNNSEKLAELLAKMLARRDQW 210 >gi|328471315|gb|EGF42214.1| DNA-dependent helicase II [Vibrio parahaemolyticus 10329] Length = 723 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 48/229 (20%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 4 SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ + Sbjct: 62 FTNKAAAEMRGRIEELMMG--------------------------------------SAS 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD + Sbjct: 84 GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----KRLIKAQNLDEKQWPA 139 Query: 190 KAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235 + + DE + D + +T L+L + R +++ Sbjct: 140 RQVAWWINGKKDEGLRPAHIDAYHDPVTKTYLQLYTAYQEACDRAGLVD 188 >gi|320157772|ref|YP_004190151.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio vulnificus MO6-24/O] gi|319933084|gb|ADV87948.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio vulnificus MO6-24/O] Length = 724 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 48/229 (20%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ S Sbjct: 63 FTNKAAAEMRGRIEELMMGSS--------------------------------------S 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD+ + Sbjct: 85 GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----KRLIKAQNLDDKQWPA 140 Query: 190 KAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235 + + DE + D + +T L+L + R +++ Sbjct: 141 RQVAWWINGKKDEGLRPAHIDAYHDPVTKTYLQLYTAYQEACDRAGLVD 189 >gi|209693834|ref|YP_002261762.1| DNA-dependent helicase II [Aliivibrio salmonicida LFI1238] gi|208007785|emb|CAQ77907.1| DNA helicase II UvrD [Aliivibrio salmonicida LFI1238] Length = 734 Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 79/198 (39%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ Sbjct: 2 DVSFLLDGLNDKQREAVAA--PLENMLVLAGAGSGKTRVLVHRIAWLMQIEQASPFSIMS 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM R+ E++ + Sbjct: 60 VTFTNKAAAEMRGRIEELMHG--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ T H C I++ L+A + F I D + ++L+ K + + LD+ Sbjct: 82 AGGMWNGTFHGICHRILRAHYLDAKLPEGFQIIDSDDQQRLL----KRLIKAQNLDDKNW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PARQAAWFINGKKDEGLR 155 >gi|297380712|gb|ADI35599.1| helicase [Helicobacter pylori v225d] Length = 949 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 15/188 (7%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW- 89 + + A+AGSGKT L R L LL A+P+ +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPNEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 90 -SHLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEA 142 +L DE + I + K +S A+ + L +++ TI AF ++ Sbjct: 65 KENLEDEKEKEKSQNILKELEEKYQLSPSFVQNSAQKIYQRFLN--AEIRISTIDAFFQS 122 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN-- 200 I+++F ++++F + E +K ++ S L+++ + EEL + L N Sbjct: 123 ILRKFCWFVGLSANFEV--NEDTKAHQQQLNASFLSALNNEQLEELSVFITQCLSYDNYT 180 Query: 201 -DEDIETL 207 D +E L Sbjct: 181 SDSILERL 188 >gi|15615542|ref|NP_243846.1| ATP-dependent nuclease subunit A [Bacillus halodurans C-125] gi|10175602|dbj|BAB06699.1| ATP-dependent nuclease subunit A [Bacillus halodurans C-125] Length = 1129 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 86/225 (38%), Gaps = 42/225 (18%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-------------NAHPS 63 I+ + ++ +SA AGSGKT +L +R + + A Sbjct: 3 ITFNQEQEQAIFSRAPLVVLSAGAGSGKTRVLTERFVHICEQKWQETQNDLEASFGAEVD 62 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 L+ +T T+ AA EM R+ + + + + + ++ + K + +AR Sbjct: 63 ELVAITFTEKAAREMKERIRQRL--LEKVEEAKAHGDAGQMIFWQKQKEGLERAR----- 115 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 + T H+FC+ ++ ++ EA I F + DE ++ + E + Sbjct: 116 ---------ISTFHSFCQRLLLEYAQEAGIPPTFIVLDEVEAAIMKREILDDLFQDAL-- 164 Query: 184 NNEELKKAFYEILEISNDEDIETL-------ISDIISNRTALKLI 221 L+ F ++LE +E+ I DI ++ K + Sbjct: 165 ----LRPLFAKLLECYTKRSLESSLLQVYEHIRDIHADDDVFKRL 205 >gi|254508570|ref|ZP_05120687.1| DNA helicase II [Vibrio parahaemolyticus 16] gi|219548512|gb|EED25520.1| DNA helicase II [Vibrio parahaemolyticus 16] Length = 723 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 48/229 (20%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 4 SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ + Sbjct: 62 FTNKAAAEMRGRIEELMMG--------------------------------------SAS 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ + + + LD + Sbjct: 84 GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----RRLIKAQNLDEKQWPA 139 Query: 190 KAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235 + + DE + D + +T L+L + R +++ Sbjct: 140 RQVSWWINGKKDEGLRPNHIDAYGDPITKTYLQLYTAYQEACDRAGLVD 188 >gi|210135718|ref|YP_002302157.1| putative recombination protein RecB [Helicobacter pylori P12] gi|210133686|gb|ACJ08677.1| ATP-dependent nuclease subunit A [Helicobacter pylori P12] Length = 946 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 13/186 (6%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIM 144 + E + I + K + A + L +++ TI AF ++I+ Sbjct: 65 KENLENEKEKSQNILKELEEKYHLDPSLVRNSAPKIYQRFLN--AEIRISTIDAFFQSIL 122 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS---ND 201 ++F ++++F + E +K ++ + L+++ + EEL + L +D Sbjct: 123 RKFCWFVGLSANFEV--NEDTKAHQQQLNEGFLSALNGEQLEELSVFIAQCLSYDSYTSD 180 Query: 202 EDIETL 207 +E L Sbjct: 181 SVLERL 186 >gi|88861280|ref|ZP_01135912.1| hypothetical protein PTD2_09564 [Pseudoalteromonas tunicata D2] gi|88816761|gb|EAR26584.1| hypothetical protein PTD2_09564 [Pseudoalteromonas tunicata D2] Length = 721 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 79/198 (39%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + + + A P ++ V A AGSGKT +LV R+ L+ + NA P ++ Sbjct: 2 DVSELLDGLNDKQRDAVAA--PLQNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIFA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV E + + Sbjct: 60 VTFTNKAAKEMRSRVEETLKT--------------------------------------S 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H I++ EA++ F I D + ++I + L ++ +D + Sbjct: 82 AGGMWIGTFHGLAHRILRAHHREAHLPEAFQILDSDDQIRMI----RRLLKAMNIDEKKW 137 Query: 188 LKKAFYEILEISNDEDIE 205 K + DE + Sbjct: 138 PPKQISWYISAKKDEALR 155 >gi|187477416|ref|YP_785440.1| nuclease/helicase [Bordetella avium 197N] gi|115422002|emb|CAJ48524.1| putative nuclease/helicase [Bordetella avium 197N] Length = 1107 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 95/221 (42%), Gaps = 15/221 (6%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 Q +++L A DP S V A AGSGKT +L R+L LL P ++ +T T+ AA+EM Sbjct: 7 QDHAQRLRALDPQTSFLVQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAASEM 66 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RVLE + E + + D + H +L+ P L ++TI + Sbjct: 67 HARVLEKLARAQGPEPEAAHERRSWRLARAALARDAERGWH----VLQHPARLAIRTIDS 122 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC +++ P + + IAD+ A A L +E + + Sbjct: 123 FCSGLVRGMPWLSGLGGMPDIADDA-------RACYEAAARATLALADEHDSVVSLLAHL 175 Query: 199 SND-EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 D + E I+ +++ R + +Y R+ +E++L Sbjct: 176 DVDIQAAEQAIAGMLAQRDQWLPLL---AYGLDREGLEQAL 213 >gi|121594696|ref|YP_986592.1| UvrD/REP helicase [Acidovorax sp. JS42] gi|120606776|gb|ABM42516.1| UvrD/REP helicase [Acidovorax sp. JS42] Length = 1101 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 90/201 (44%), Gaps = 9/201 (4%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 +A DP RS V A AG+GKT +LV R+LR LL P +L +T TK AA EM R+ E Sbjct: 24 AIACDPQRSVAVEACAGAGKTWMLVSRMLRALLDGCAPHEILAITFTKKAAGEMRQRLQE 83 Query: 85 IITAWSHLSDEILSAEI-TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + ++ L E+ + G + + + L L+ ++++T H++ A+ Sbjct: 84 WLQEFAAKPLPDLEKELIARGIGPQRALDKREQLQKLYRQTLDAGRPVQIRTFHSWFAAL 143 Query: 144 MQQFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 + PL + +H+ + +++ + + E + LA++ D L+ + + Sbjct: 144 LGTAPLAVLEQQGLPAHYDLLEDD--AEAVREVWRPYLAAVAQD--AALRADYEACVAHH 199 Query: 200 NDEDIETLISDIISNRTALKL 220 + ++ R L Sbjct: 200 GRSQTHKALEGALAKRVEFAL 220 >gi|330959506|gb|EGH59766.1| putative UvrD helicase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 1144 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 90/204 (44%), Gaps = 11/204 (5%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 + LA DP RS + A AGSGKT L R+L L P +L +T T AAAE+ Sbjct: 49 DDAEARALAIDPRRSLLLLAPAGSGKTSTLQMRLLSCLTVVDRPEEVLAITFTNMAAAEI 108 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV+ + + + L+ E+ + + + + + + + +L P L++ T + Sbjct: 109 VERVIGALQQAATGIEPELAHELPQY---RLARLVLDRDKEMGWNLLLNPSRLRIMTFDS 165 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE-LKKAFYEILE 197 FC ++ + P+ + + + + + +A TL S+ ++ E L A +L Sbjct: 166 FCASLASKTPIMSGLGGG---KTTDDASLIYRQAILETLKSVNDNDIPEGLSSALEAVLS 222 Query: 198 ISNDEDIETLI---SDIISNRTAL 218 + + E L+ +++ R Sbjct: 223 FAKNR-FEALVPLFENLLMKRDQW 245 >gi|317052675|ref|YP_004113791.1| UvrD/REP helicase [Desulfurispirillum indicum S5] gi|316947759|gb|ADU67235.1| UvrD/REP helicase [Desulfurispirillum indicum S5] Length = 1123 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 13/223 (5%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 ++ + A D + S V A AGSGKT +L QR L LL + P +L +T T+ A EM Sbjct: 9 DEAARTRALDISTSFIVQAPAGSGKTELLTQRFLALLGQVSEPEEILAITFTRKAVGEMR 68 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV + + D A + ++ ++ AR +LE P L++QTI A Sbjct: 69 ERV---LGSLRMALDAEPPAAPHLRTTWELARAALANARRQEWNLLEHPTRLRIQTIDAL 125 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C +I++Q P + + AI+DE +L +A TL + E + + Sbjct: 126 CASIVRQIPYFSRLGGQMAISDEP--ARLYRQAAMQTLEEL------ECPHVRTVLTHLH 177 Query: 200 ND-EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 ND E L+ +++ R L + R +E+SL + Sbjct: 178 NDMERACALLMEMLQRREQW-LHHIVAARKADRAALERSLAHV 219 >gi|260770702|ref|ZP_05879632.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio furnissii CIP 102972] gi|260614283|gb|EEX39472.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio furnissii CIP 102972] gi|315178541|gb|ADT85455.1| DNA-dependent helicase II [Vibrio furnissii NCTC 11218] Length = 724 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ S Sbjct: 63 FTNKAAAEMRGRIDELMMGSS--------------------------------------S 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD+ + Sbjct: 85 GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----KRLIKAQNLDDKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 RQVSWWINGKKDEGLR 156 >gi|269962274|ref|ZP_06176626.1| DNA helicase II [Vibrio harveyi 1DA3] gi|269832977|gb|EEZ87084.1| DNA helicase II [Vibrio harveyi 1DA3] Length = 724 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + + P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQSSPFSIMSVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ + G Sbjct: 63 FTNKAAAEMRGRIEELMMG--------------------------------------SAG 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD + Sbjct: 85 GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----KRLIKAQNLDEKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 RQVAWWINGKKDEGLR 156 >gi|226942221|ref|YP_002797294.1| DNA-dependent helicase II [Azotobacter vinelandii DJ] gi|226717148|gb|ACO76319.1| DNA helicase II, UvrD [Azotobacter vinelandii DJ] Length = 726 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 76/199 (38%), Gaps = 45/199 (22%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLL 66 ++ S + ++ + + + A P V A AGSGKT +LV R+ L+ + NA P +L Sbjct: 3 EDLSFLLSALNAAQRQAVTA--PLGPRLVLAGAGSGKTRVLVHRIAWLIEVENASPHAIL 60 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AAAEM R+ +++ Sbjct: 61 AVTFTNKAAAEMRTRIEQLLGT-------------------------------------- 82 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 +P G+ + T H +++ EA + +F I D + ++L K + + LD Sbjct: 83 SPMGMWIGTFHGLAHRLLRAHWQEAGLAENFQILDADDQQRL----VKRVIRELGLDEQR 138 Query: 187 ELKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 139 WPARQAQWFINAKKDEGLR 157 >gi|260425183|ref|ZP_05779176.1| ATP-dependent nuclease subunit A [Dialister invisus DSM 15470] gi|260404424|gb|EEW97971.1| ATP-dependent nuclease subunit A [Dialister invisus DSM 15470] Length = 1285 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 94/221 (42%), Gaps = 27/221 (12%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL---LCLTHTKA 73 ++ T ++Q ++ +SA AGSGKT +L +R+ +L+ P+ + L LT T+A Sbjct: 4 MTWTTAQQAAIDARRQNLLLSAAAGSGKTAVLTERIKKLITDMDDPADITELLVLTFTRA 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 +A EM R+ S+ I K + + + ARHL L ++ Sbjct: 64 SAGEMKTRI---------------SSGIAKALSEAEQERNTPLARHL-SRQLALMSSAQI 107 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T+ +F + +++++ ++ + + + +E+ L+ ++ E + AF Sbjct: 108 STLDSFFQTLIRRYFYLIDLDPNTKMLTDSNEIYALEQ---DVLSEVLETYYERGEPAFL 164 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 + ++ + ++ D T L L F S + + Sbjct: 165 DCADLLSGGFEDSGFKD-----TILSLYHFSCSMPFPEDWL 200 >gi|317013352|gb|ADU83960.1| putative recombination protein RecB [Helicobacter pylori Lithuania75] Length = 951 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 13/186 (6%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIM 144 + E + I + K + A + L +++ TI AF ++I+ Sbjct: 65 KENLESEKEKSQNILKELEEKYHLKPDLVRNSAPKIYQRFLN--AEIRISTIDAFFQSIL 122 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS---ND 201 ++F ++++F + E +K ++ S L+++ + E+L + L +D Sbjct: 123 RKFCWFVGLSANFEV--NEDTKAHQQQLNASFLSALNGEQLEKLSVFIAQCLSYDSYTSD 180 Query: 202 EDIETL 207 +E L Sbjct: 181 SILERL 186 >gi|28899787|ref|NP_799392.1| DNA-dependent helicase II [Vibrio parahaemolyticus RIMD 2210633] gi|260362520|ref|ZP_05775446.1| DNA helicase II [Vibrio parahaemolyticus K5030] gi|260877200|ref|ZP_05889555.1| DNA helicase II [Vibrio parahaemolyticus AN-5034] gi|260897243|ref|ZP_05905739.1| DNA helicase II [Vibrio parahaemolyticus Peru-466] gi|260901376|ref|ZP_05909771.1| DNA helicase II [Vibrio parahaemolyticus AQ4037] gi|28808039|dbj|BAC61276.1| DNA helicase II [Vibrio parahaemolyticus RIMD 2210633] gi|308088957|gb|EFO38652.1| DNA helicase II [Vibrio parahaemolyticus Peru-466] gi|308094142|gb|EFO43837.1| DNA helicase II [Vibrio parahaemolyticus AN-5034] gi|308107188|gb|EFO44728.1| DNA helicase II [Vibrio parahaemolyticus AQ4037] gi|308112661|gb|EFO50201.1| DNA helicase II [Vibrio parahaemolyticus K5030] Length = 724 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 48/229 (20%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 5 SLLLDDLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ + Sbjct: 63 FTNKAAAEMRGRIEELMMG--------------------------------------SAS 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD + Sbjct: 85 GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----KRLIKAQNLDEKQWPA 140 Query: 190 KAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235 + + DE + D + +T L+L + R +++ Sbjct: 141 RQVAWWINGKKDEGLRPAHIDAYHDPVTKTYLQLYTAYQEACDRAGLVD 189 >gi|146343947|ref|YP_001201803.1| putative UvrD helicase [Pseudomonas fluorescens SBW25] gi|146187759|emb|CAM96087.1| putative UvrD helicase [Pseudomonas fluorescens SBW25] Length = 1121 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 47/201 (23%), Positives = 89/201 (44%), Gaps = 11/201 (5%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 + LA DP RS + A AGSGKT L R+L L P +L +T T AAAE+ R Sbjct: 29 EARALAIDPRRSLLLLAPAGSGKTSTLQMRLLSCLTVVERPEEVLAITFTNMAAAEIVER 88 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V+ + + + L E+ + + + + + + + +L P L++ T +FC Sbjct: 89 VIGALQQAATGIEPELVHELPQY---RLARLVLDRDKEMGWNLLLNPSRLRIMTFDSFCA 145 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELKKAFYEILEISN 200 ++ + P+ + + + + + +A TL S+ ++ E L A +L + Sbjct: 146 SLASKTPIMSGLGGG---KTTDDASLIYRQAILETLKSVNDNDIPEALSNALEAVLSFAK 202 Query: 201 DEDIETLI---SDIISNRTAL 218 + E L+ +++ R Sbjct: 203 NR-FEALVPLFENLLMKRDQW 222 >gi|317014973|gb|ADU82409.1| putative recombination protein RecB [Helicobacter pylori Gambia94/24] Length = 946 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 15/187 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIM 144 + E + I + K + A+ + L +++ TI AF ++I+ Sbjct: 65 KENLENEKEKSQNILKELEEKYHLDPSLVQNSAQKIYQRFLN--AEIRISTIDAFFQSIL 122 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKS-TLASIMLDNNEELKKAFYEILEISN--- 200 ++F ++++F + ++ ++ + L+++ + EEL + L N Sbjct: 123 RKFCWFVGLSANFEVNEDTEA---YQACLNEGFLSALNSEQLEELSAFIVQCLSYENYTS 179 Query: 201 DEDIETL 207 D +E L Sbjct: 180 DSILERL 186 >gi|254230196|ref|ZP_04923589.1| DNA helicase II [Vibrio sp. Ex25] gi|262392860|ref|YP_003284714.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. Ex25] gi|151937281|gb|EDN56146.1| DNA helicase II [Vibrio sp. Ex25] gi|262336454|gb|ACY50249.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. Ex25] Length = 724 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 77/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ + Sbjct: 63 FTNKAAAEMRGRIEELMMG--------------------------------------SAS 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD + Sbjct: 85 GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQQRLL----KRLIKAQNLDEKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 RQVSWWINGKKDEGLR 156 >gi|260775103|ref|ZP_05884002.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio coralliilyticus ATCC BAA-450] gi|260609020|gb|EEX35180.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio coralliilyticus ATCC BAA-450] Length = 723 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 77/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 4 SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ + Sbjct: 62 FTNKAAAEMRGRIEELMMG--------------------------------------SAS 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ + + + LD + Sbjct: 84 GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDTDDQQRLL----RRLIKAQNLDEKQWPA 139 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 140 RQVSWWINGKKDEGLR 155 >gi|54297724|ref|YP_124093.1| hypothetical protein lpp1775 [Legionella pneumophila str. Paris] gi|53751509|emb|CAH12927.1| hypothetical protein lpp1775 [Legionella pneumophila str. Paris] Length = 1076 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 5/203 (2%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 ++ A+DP S V A AGSGKT IL QR LRLL P ++ LT T+ AA+EM R Sbjct: 7 EQRSQATDPAESFIVQAPAGSGKTEILTQRFLRLLSTVQSPEQIIALTFTRKAASEMRER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 +++ + + + + + + + K + + + +LE P LK+ TI + C+ Sbjct: 67 IVQALHMAASNQPAVSAHQQSTL---NFAKQALQRNKQYQWDLLEQPNRLKIITIDSLCQ 123 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 +I + PL ++ I++ S I A+ +I +E K ++ + Sbjct: 124 SINRAIPLLEKQVAYPDISETPDSHY-ISAARCCIQYAIATPEYQEAIKTLLLHVDNKQE 182 Query: 202 EDIETLISDIISNRTALKLIFFF 224 I+ L ++S R F Sbjct: 183 RLIQ-LFQALLSQRDQWLPTLFL 204 >gi|256544667|ref|ZP_05472039.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170] gi|256399556|gb|EEU13161.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170] Length = 1139 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 88/229 (38%), Gaps = 32/229 (13%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLL 66 + S + T ++ ++ VSA AGSGKT +LV R++ ++L P ++ Sbjct: 3 LKRSNQMSKFKPTDDQKKAIETRGKNIIVSAAAGSGKTRVLVDRLVSIMLEEKIPIKNMI 62 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T A+ EM R+ + + + + + ++ Sbjct: 63 IVTFTNKASVEMKDRIRQKLNELMKEGNSD---------------------KIFIKNQIK 101 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 + ++T+H+FC ++++ ++ ++ F IA + + L ++A N+ Sbjct: 102 SINDAFIKTLHSFCADMLRENFYLSDNLSPSFKIAADSKQALLRKDAIDELFEDEYEKND 161 Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 + +D+D + +I D+ F S + + + Sbjct: 162 SNFINFLHNFASSKDDKDAKNIILDL---------YDFSKSQINPHQWL 201 >gi|298737172|ref|YP_003729702.1| putative ATP-dependent helicase [Helicobacter pylori B8] gi|298356366|emb|CBI67238.1| putative ATP-dependent helicase [Helicobacter pylori B8] Length = 945 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 13/186 (6%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIM 144 + E + I + K + A + L +++ TI AF ++I+ Sbjct: 65 KENLENEKEKSQNILKELEEKYHLDPSLVRNSAPKIYQRFLN--AEVRISTIDAFFQSIL 122 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS---ND 201 ++F ++++F + E +K + + L+++ + EEL + L +D Sbjct: 123 RKFCWFVGLSANFEV--NEDTKVHQRQLNEGFLSALNNEQLEELSAFIVQCLSYDSYTSD 180 Query: 202 EDIETL 207 +E L Sbjct: 181 SILERL 186 >gi|109946901|ref|YP_664129.1| putative recombination protein RecB [Helicobacter acinonychis str. Sheeba] gi|109714122|emb|CAJ99130.1| ATP-dependent nuclease subunit A [Helicobacter acinonychis str. Sheeba] Length = 966 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 12/185 (6%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMVLKASAGSGKTFALSVRFLALLFEGANPSEILTLTFTKKATAEMEGRILDYLKILQ 64 Query: 91 HLSDEILSAEITKIQGKKPNKSDM------SKARHLLITILETPGGLKVQTIHAFCEAIM 144 S E + I + K D+ A+ + L +K+ TI AF ++I+ Sbjct: 65 KESSESEKEKSQNILKELEEKYDLNPSLVQDNAKKIYQRFLN--AEIKISTIDAFFQSIL 122 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED- 203 ++F ++++F + ++ Q+ ++ +S L+++ + +EL + L N D Sbjct: 123 RKFCWFVGLSANFEVNEDTQAY--QQQLSESFLSALDSEQLKELSVFVAQCLSDENRSDS 180 Query: 204 -IETL 207 +E L Sbjct: 181 VLEQL 185 >gi|152981098|ref|YP_001352315.1| hypothetical protein mma_0625 [Janthinobacterium sp. Marseille] gi|151281175|gb|ABR89585.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 1083 Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats. Identities = 54/195 (27%), Positives = 100/195 (51%), Gaps = 3/195 (1%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 A DP+RS V A AGSGKT +LV RVLRLLLA P+ +L +T T+ AA EM R+++ Sbjct: 20 ARACDPSRSVVVEACAGSGKTWLLVARVLRLLLAGTEPAAILAITFTRKAAQEMRERLMQ 79 Query: 85 IITAWSHLSD-EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 ++ + D E+L+ + ++ + +AR L +L +P L + T H++ + Sbjct: 80 LLHELTLKPDAEVLALLRERGIAEQALAETLPQARGLYEQVLRSPQALSIDTFHSWFARL 139 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 +Q PL + + +++ E + +L+ +A + + + + +K A ++ D Sbjct: 140 IQIAPLASGVPHGYSLT--EATGELLSDAYSRFMQQVNEKDQQHVKDALVDLYTQVGDFS 197 Query: 204 IETLISDIISNRTAL 218 L++ ++ R Sbjct: 198 TRNLLNSFVAKRAEW 212 >gi|255526102|ref|ZP_05393024.1| UvrD/REP helicase [Clostridium carboxidivorans P7] gi|296185823|ref|ZP_06854230.1| UvrD/REP helicase [Clostridium carboxidivorans P7] gi|255510218|gb|EET86536.1| UvrD/REP helicase [Clostridium carboxidivorans P7] gi|296049651|gb|EFG89078.1| UvrD/REP helicase [Clostridium carboxidivorans P7] Length = 1112 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 64/162 (39%), Gaps = 20/162 (12%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + I EQ A D T++ VSA AGSGKT +L R LRLL + +T T+ Sbjct: 1 MSSIFGLSEEQEKAVDITKNIAVSAGAGSGKTRVLTNRYLRLLEGGLQIEEIAAITFTEK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + I SD + + L+ + Sbjct: 61 AALEMKERIRKAINEKISSSDFDH--------------------KKQWMKHLDKLNRANI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 TIH FC I+++ + F+I D + EA ++ Sbjct: 101 STIHGFCSNIVRENAAFLGVDFSFSIIDGIDKAMFLREASQN 142 >gi|227810114|ref|ZP_03989027.1| UvrD/REP helicase [Acidaminococcus sp. D21] gi|226904694|gb|EEH90612.1| UvrD/REP helicase [Acidaminococcus sp. D21] Length = 611 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 21/166 (12%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 + + TK + L + R+ VSA AGSGKT +LV+R L +L + + +L +T T+ Sbjct: 1 MQMADFTKEQTLAITTLDRNVSVSAGAGSGKTRVLVERFLTILKDPDKSANRILAITFTR 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ + + + L R L G Sbjct: 61 KAAREMRERIRKSLLEEVGKTSGEL--------------------RAHFEEQLRHLDGAP 100 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 + TI FC I++ P+EA + F + +E + K+ + L Sbjct: 101 ITTIDGFCSQILRDHPVEAGMDPQFTVKEEYEVKEFQASVIDAFLR 146 >gi|325982026|ref|YP_004294428.1| UvrD/REP helicase [Nitrosomonas sp. AL212] gi|325531545|gb|ADZ26266.1| UvrD/REP helicase [Nitrosomonas sp. AL212] Length = 738 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 79/220 (35%), Gaps = 51/220 (23%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L+S +QL A P +S V A AGSGKT +L R+ L+ + PS +L +T T Sbjct: 4 LLSDLNPQQLEAITLPHQSVLVLAGAGSGKTRVLTTRIAYLIQSGQVSPSGILAVTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ P G+ + Sbjct: 64 AAKEMLARITAMLPI--------------------------------------NPRGMWI 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ +A + F I D LI K L + D+ + + Sbjct: 86 GTFHGLCHRMLRSHYQDAGLPQAFQILDSADQLALI----KRILKDLSADDKKFPPRQVQ 141 Query: 194 EILEISNDEDIETLI---SDIISNRTALKLIFFFFSYLWR 230 + + + + D+ S ++ F+ +Y R Sbjct: 142 WFINNAKESGLRAAYVTPDDVFSRH----MLEFYQAYEQR 177 >gi|260220997|emb|CBA29121.1| hypothetical protein Csp_A10560 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 1131 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 9/201 (4%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 +A DP RS V A AG+GKT +LV R++R LL A P +L +T TK AA EM R+ + Sbjct: 33 AIACDPRRSVAVEACAGAGKTWMLVSRMVRALLDGAAPHEILAITFTKKAAGEMRERLYD 92 Query: 85 IITAWSHLSDEILSAEIT-KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + +++ D L E+ + P ++K R L +L ++V+T H++ A+ Sbjct: 93 WLRSYARADDSTLRRELQLRGVQGDPGAEQLAKLRSLHEALLLAGRPVQVRTFHSWFAAL 152 Query: 144 MQQFPL----EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 ++ PL + + + + + + + K I + + I D + + E + + Sbjct: 153 LRSAPLGMLHQLGLPTQYELLEND--AKAIAQVWRRFHTRIAQD--AAARADYLEAVGVY 208 Query: 200 NDEDIETLISDIISNRTALKL 220 + I RT L Sbjct: 209 GRHGTLKALEAAIHKRTEFAL 229 >gi|312881427|ref|ZP_07741222.1| DNA-dependent helicase II [Vibrio caribbenthicus ATCC BAA-2122] gi|309370909|gb|EFP98366.1| DNA-dependent helicase II [Vibrio caribbenthicus ATCC BAA-2122] Length = 724 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 77/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 + ID +++ + + A P + V A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 5 NALIDGLNEKQRAAVAA--PIENLLVLAGAGSGKTRVLVHRIAWLMSVEEASPFSIMSVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ + Sbjct: 63 FTNKAAAEMRGRIEELMMG--------------------------------------SAS 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ + + + LD + Sbjct: 85 GMWNGTFHGLCHRILRAHYLDAKLPEDFQIIDSDDQQRLL----RRLIKAQNLDEKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 RQVSWWINGKKDEGLR 156 >gi|167771642|ref|ZP_02443695.1| hypothetical protein ANACOL_03014 [Anaerotruncus colihominis DSM 17241] gi|167666282|gb|EDS10412.1| hypothetical protein ANACOL_03014 [Anaerotruncus colihominis DSM 17241] Length = 1174 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 37/225 (16%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + + + VSA AGSGKT +LV+RV+ +L +P LL +T + AAA Sbjct: 6 WTPQQADAIAARGGTVLVSAAAGSGKTAVLVERVVGRILDEKNPVDADRLLIVTFSNAAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R++ ++ E ++ G ++ T Sbjct: 66 LEMKQRIMARMSELIAAHPEDRRLRRQQLLL----------------------GRAQIST 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ I S+ ADE + + + + ++ + + D+ + E+ Sbjct: 104 IHSFCLELIRSNFQALGIASNTRAADERELEIMRRDCARACIEQFLSDDADGGFSQLVEL 163 Query: 196 LEISNDED--IETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 L D+ +TL L F ++ + ++ L Sbjct: 164 LSAGRDDRRVFDTL----------FSLYDFVRAHPFYNDWLDDKL 198 >gi|323494180|ref|ZP_08099295.1| DNA-dependent helicase II [Vibrio brasiliensis LMG 20546] gi|323311574|gb|EGA64723.1| DNA-dependent helicase II [Vibrio brasiliensis LMG 20546] Length = 723 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 77/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 4 SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ + Sbjct: 62 FTNKAAAEMRGRIEELMMG--------------------------------------SAS 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ + + + LD + Sbjct: 84 GMWNGTFHGICHRILRAHYLDAQLPEDFQIIDSDDQQRLL----RRLIKAQNLDEKQWPA 139 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 140 RQVGWWINGKKDEGLR 155 >gi|319778427|ref|YP_004129340.1| ATP-dependent DNA helicase pcrA [Taylorella equigenitalis MCE9] gi|317108451|gb|ADU91197.1| ATP-dependent DNA helicase pcrA [Taylorella equigenitalis MCE9] Length = 1109 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 10/205 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I+ + ++ LA D ++S V A AGSGKT IL R+L LL P +L +T TK AA+ Sbjct: 5 IAADQKQRDLALDSSKSYIVQAPAGSGKTEILSTRILSLLCVVEKPEQILAITFTKKAAS 64 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV E + S+ E +++ + + + + ILE +++TI Sbjct: 65 EMLDRVYEKLLNHSNPEPESEFEKLS----WELANKVIQRDKEKNWKILENLDRFRIRTI 120 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 +F + ++ PL + + + + +S L EA + ++ + + L Sbjct: 121 DSFTKNLISNTPLISGVGAGVEFTENAES--LFHEAVDLMIEEY---DDHPFLRQVLDHL 175 Query: 197 EISNDEDIETLISDIISNRTALKLI 221 ++ D L+ ++ R + + Sbjct: 176 DMDFD-GFRRLMIQMLHKRLNWQDL 199 >gi|77461864|ref|YP_351371.1| DNA-dependent helicase II [Pseudomonas fluorescens Pf0-1] gi|77385867|gb|ABA77380.1| DNA helicase II [Pseudomonas fluorescens Pf0-1] Length = 727 Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 71/185 (38%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 +++ + P V A AGSGKT +LV R+ L+ + NA P ++L +T T AAAEM H Sbjct: 15 AQRQAVAAPVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRH 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ P G+ V T H Sbjct: 75 RIEQLLGI--------------------------------------NPAGMWVGTFHGLA 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA ++ F I D + ++L K + + LD + + Sbjct: 97 HRLLRAHWQEAGLSQTFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWFINGQK 152 Query: 201 DEDIE 205 DE + Sbjct: 153 DEGLR 157 >gi|330505760|ref|YP_004382629.1| DNA-dependent helicase II [Pseudomonas mendocina NK-01] gi|328920046|gb|AEB60877.1| DNA-dependent helicase II [Pseudomonas mendocina NK-01] Length = 727 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 48/199 (24%), Positives = 74/199 (37%), Gaps = 44/199 (22%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66 Q E + L S ++ + P V A AGSGKT +LV R+ L+ A A P ++L Sbjct: 2 QNDPELL-LASLNDAQVQAVAAPLGRQLVLAGAGSGKTRVLVHRIAFLIQAIGASPHSIL 60 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AAAEM HR+ +++ Sbjct: 61 SVTFTNKAAAEMRHRIEQMLG--------------------------------------H 82 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 P G+ V T H +++ EA + +F I D + ++LI K + + LD Sbjct: 83 NPAGMWVGTFHGLAHRLLRAHWQEAGLAENFQILDSDDQQRLI----KRVIRELGLDEQR 138 Query: 187 ELKKAFYEILEISNDEDIE 205 K + DE Sbjct: 139 WPAKQAQWFINGQKDEGFR 157 >gi|295095005|emb|CBK84096.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Coprococcus sp. ART55/1] Length = 1280 Score = 144 bits (364), Expect = 9e-33, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 99/241 (41%), Gaps = 37/241 (15%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL---------LAN 59 + +T + I T + + + VSA AGSGKT +LV+R++ ++ + Sbjct: 3 KDMKTDNGIKWTDQQAHVIDTRHGNLLVSAAAGSGKTAVLVERIIEMVAGRNSRGDRIEG 62 Query: 60 AHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116 + P LL +T T AAAA+M ++ + L +I ++ K + K Sbjct: 63 SEPVSVDELLVVTFTNAAAAQMKEKIGQ-----------ALQKKIDEMMAKGEYDEHLIK 111 Query: 117 ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L+ + TI +FC I++++ + F IAD+ + K + + Sbjct: 112 QMTLI-------NHADICTIDSFCLRIVKEYFARVELDCAFGIADDTEMKIIKHDVMDQV 164 Query: 177 LASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + D E + F ++ + ++ + DI+ ++I SY +K + + Sbjct: 165 MEMCYED--ESVVPGFDRLIMTFARNESDSAVPDIVE-----RIIKVISSYPEPKKWLAQ 217 Query: 237 S 237 + Sbjct: 218 A 218 >gi|89074458|ref|ZP_01160935.1| putative ATP-dependent DNA helicase Rep [Photobacterium sp. SKA34] gi|89049746|gb|EAR55296.1| putative ATP-dependent DNA helicase Rep [Photobacterium sp. SKA34] Length = 723 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 76/198 (38%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ LL + A P +++ Sbjct: 2 DVSLLLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLVHRIAWLLSVEQASPYSIMS 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM R+ E++ S Sbjct: 60 VTFTNKAAAEMRGRINELMHGSS------------------------------------- 82 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ T H C +++ L+A + F I D + +L+ + + + LD Sbjct: 83 -AGMWNGTFHGLCHRMLRAHYLDARLPEDFNILDSDDQMRLL----RRLIKAQNLDEKHW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PARQAAWYINAKKDEGLR 155 >gi|260774493|ref|ZP_05883407.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio metschnikovii CIP 69.14] gi|260610620|gb|EEX35825.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio metschnikovii CIP 69.14] Length = 718 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 45/194 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T T Sbjct: 1 MLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLISVEQASPFSVMSVTFT 58 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM R+ E++ + G+ Sbjct: 59 NKAAAEMRGRIEELMQG--------------------------------------SASGM 80 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 T H C I++ L+AN+ F I D E +L+ + + + LD + K Sbjct: 81 WNGTFHGICHRILRAHYLDANLPEDFQILDSEDQLRLL----RRLIKAQNLDEKQWPAKQ 136 Query: 192 FYEILEISNDEDIE 205 + DE + Sbjct: 137 VCWWVNGKKDEGLR 150 >gi|330444888|ref|ZP_08308543.1| DNA helicase II [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489198|dbj|GAA03040.1| DNA helicase II [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 723 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 76/198 (38%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ LL + A P +++ Sbjct: 2 DVSLLLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLVHRIAWLLSVEQASPYSIMS 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM R+ E++ S Sbjct: 60 VTFTNKAAAEMRGRINELMQGSS------------------------------------- 82 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ T H C +++ L+A + F I D + +L+ + + + LD Sbjct: 83 -AGMWNGTFHGLCHRMLRAHYLDARLPEDFNILDSDDQMRLL----RRLIKAQNLDEKHW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PARQAAWYINAKKDEGLR 155 >gi|170017499|ref|YP_001728418.1| ATP-dependent exoDNAse beta subunit [Leuconostoc citreum KM20] gi|251764532|sp|B1MZM2|ADDA_LEUCK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|169804356|gb|ACA82974.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Leuconostoc citreum KM20] Length = 1236 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 85/218 (38%), Gaps = 25/218 (11%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T ++Q + + V+A+AGSGKT +L++R+++ +L+ L +T T AAA EM Sbjct: 5 FTINQQRAVEETGHNILVAASAGSGKTTVLIERLIQKILSGISVENFLIVTFTNAAAKEM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ I +++ + + L L + TI A Sbjct: 65 RERLEIAIEKRLRDANDGM--------------------KRFLQEQLLLLPAANISTIDA 104 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + +++ + + F + + + ++ + T+ D + F ++ Sbjct: 105 YALRLIENYYHVIGLDPQFRLLSDTAERDMMRQDVLDTVFEAFYDETHPQHENFIALVNN 164 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + + + + LKL F + ++ +++ Sbjct: 165 FGNPNQDDALRQAV-----LKLSDFAEARPDGQQWLKE 197 >gi|217033850|ref|ZP_03439275.1| hypothetical protein HP9810_877g54 [Helicobacter pylori 98-10] gi|216943748|gb|EEC23191.1| hypothetical protein HP9810_877g54 [Helicobacter pylori 98-10] Length = 938 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 15/188 (7%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW- 89 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 90 -SHLSDEILSAEITKIQGKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFCEA 142 +L DE + I + K + +A+ + L +++ TI AF ++ Sbjct: 65 KENLEDEKEKEKSQNILKELEEKYRLDPSFVQNRAQEIYQRFLN--AEIRISTIDAFFQS 122 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS--- 199 I+++F ++++F + E +K ++ S L+++ + EEL + L Sbjct: 123 ILRKFCWFVGLSANFEV--NEYTKAHQQQLNASFLSALNNEQLEELSVFITQCLSYDSYT 180 Query: 200 NDEDIETL 207 +D +E L Sbjct: 181 SDSILERL 188 >gi|15646160|ref|NP_208344.1| putative recombination protein RecB [Helicobacter pylori 26695] gi|2314736|gb|AAD08593.1| helicase [Helicobacter pylori 26695] Length = 945 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 13/186 (6%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIM 144 + E + I + K + A + L +++ TI AF ++I+ Sbjct: 65 QENLENEKEKSQNILKELEEKYHLDPSLVQNSAPKIYQRFLN--AEIRISTIDAFFQSIL 122 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS---ND 201 ++F ++++F + E +K ++ + L+++ + E L + L +D Sbjct: 123 RKFCWFVGLSANFEV--NEDTKAHQQQLNEGFLSALNGEQLEALSVFIAQCLSYDSYTSD 180 Query: 202 EDIETL 207 +E L Sbjct: 181 SILERL 186 >gi|292493733|ref|YP_003529172.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4] gi|291582328|gb|ADE16785.1| UvrD/REP helicase [Nitrosococcus halophilus Nc4] Length = 715 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 88/231 (38%), Gaps = 48/231 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67 + S ++ +++ + E + A P V A AGSGKT +LV R+ L+ P +LL Sbjct: 2 DISYLLNPLNKAQREAVAA--PAGHHLVLAGAGSGKTRVLVHRIAWLIRSQGISPFSLLA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ E++ + Sbjct: 60 VTFTNKAAGEMRGRIEELLGMPA------------------------------------- 82 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ EA + F I D E +LI + L ++ LD Sbjct: 83 -GGMWMGTFHGLAHRLLRTHWQEAQLPQDFQILDSEDQYRLI----RRILQNLNLDETRW 137 Query: 188 LKKAFYEILEISNDEDIE-TLISDIISN--RTALKLIFFFFSYLWRRKIIE 235 + + DE + + D + R +++ + S+ R +++ Sbjct: 138 PPRQAQWFINGRKDEGLRPQHLEDDGNPYLRQQIRIYHSYQSHCERSGLVD 188 >gi|83589346|ref|YP_429355.1| DNA helicase/exodeoxyribonuclease V, subunit A [Moorella thermoacetica ATCC 39073] gi|123525008|sp|Q2RL77|ADDA_MOOTA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|83572260|gb|ABC18812.1| DNA helicase/exodeoxyribonuclease V, subunit A [Moorella thermoacetica ATCC 39073] Length = 1405 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 80/221 (36%), Gaps = 33/221 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T + + V+A AG+GKT +LV+R+++ L P LL +T T+AAA Sbjct: 9 WTPDQLAAIRARRANILVAAAAGAGKTAVLVERIIQRLTDPEDPVSLENLLVVTFTEAAA 68 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + A E + + + + T Sbjct: 69 AEMRQRIGAALEAAVARDPENEALRRQLLLLNR----------------------AHIST 106 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ + ++ F + D + + E L + ++ Sbjct: 107 IHSFCLWVLRTYFYRLDLDPGFRVMDPAEVDLMQLEVMDRVLEEAFAAEPDGGP--VTDL 164 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + L+ D++ L++ F S W +E+ Sbjct: 165 ADSLGGRGDANLV-DLV-----LRVWEFSRSLPWPEAWLEQ 199 >gi|309805609|ref|ZP_07699651.1| ATP-dependent deoxyribonuclease subunit A domain protein [Lactobacillus iners LactinV 09V1-c] gi|308165047|gb|EFO67288.1| ATP-dependent deoxyribonuclease subunit A domain protein [Lactobacillus iners LactinV 09V1-c] Length = 144 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 69/156 (44%), Gaps = 22/156 (14%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + S TK ++ D VSA+AGSGKT +LV+RV+ +L + LL +T TKAAA Sbjct: 1 MTSFTKEQEKAIYDSNIDILVSASAGSGKTTVLVERVIEKILHHQSIENLLIITFTKAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ I + L L L + T Sbjct: 61 SEMKLRIKNAIKNKIKEQPDNL----------------------FLKQQLAKVDIANIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 I +FC ++++F N+ +F+I ++ L++E Sbjct: 99 IDSFCLEVIRKFYYVINLDPNFSIMTDDTQLSLLKE 134 >gi|157960297|ref|YP_001500331.1| DNA-dependent helicase II [Shewanella pealeana ATCC 700345] gi|157845297|gb|ABV85796.1| DNA helicase II [Shewanella pealeana ATCC 700345] Length = 721 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 70/198 (35%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P +L Sbjct: 2 DVSSLLDGLNDKQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYAILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV ++ Sbjct: 60 VTFTNKAAKEMRERVEKVAGG--------------------------------------N 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + + T H +++ +AN+ F I D + +LI K L S+ LD + Sbjct: 82 MSRMWIGTFHGLAHRLLRTHYKDANLPESFQILDSDDQLRLI----KRILKSLNLDEKQY 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D + Sbjct: 138 PPRQAQGYINGKKDLGLR 155 >gi|188528332|ref|YP_001911019.1| putative recombination protein RecB [Helicobacter pylori Shi470] gi|188144572|gb|ACD48989.1| helicase [Helicobacter pylori Shi470] Length = 949 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 21/191 (10%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI-- 62 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSK-----------ARHLLITILETPGGLKVQTIHAF 139 L E L +E K + + K K A+ + L +++ TI AF Sbjct: 63 -LQKENLESEKEKEKSQNILKELEEKYRLNPSLVQNSAQKIYQRFLN--AEMRISTIDAF 119 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 ++I+++F ++++F + E +K ++ S L+++ + EEL + L Sbjct: 120 FQSILRKFCWFVGLSANFEV--NEDTKVHQQQLNASFLSALNNEQLEELSVFITQCLSHD 177 Query: 200 N---DEDIETL 207 N D +E L Sbjct: 178 NYTSDSILERL 188 >gi|289207283|ref|YP_003459349.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix] gi|288942914|gb|ADC70613.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix] Length = 735 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 72/198 (36%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + P +LL Sbjct: 2 DVSPLLDSLNPAQREAVAA--PPQPLLVLAGAGSGKTRVLVHRIAWLIGVEGVAPHSLLA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM R+ ++ + Sbjct: 60 VTFTNKAAAEMRGRIEALLGHPAT------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GL V T H +++Q +A + F I D + ++ K L + LD Sbjct: 84 --GLWVGTFHGLAHRLLRQHWQDARLPQGFQILDSDDQLRM----VKRVLRGLELDEARW 137 Query: 188 LKKAFYEILEISNDEDIE 205 K + DE Sbjct: 138 PPKQAQWYINARKDEGAR 155 >gi|21666114|gb|AAM73563.1| DNA helicase II [Escherichia coli] Length = 133 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 43/175 (24%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 1 PRTNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 60 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + GG+ V T H +++ Sbjct: 61 --------------------------------------SQGGMWVGTFHGLAHRLLRAHH 82 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++AN+ F I D E +L+ K + ++ LD + + + DE Sbjct: 83 MDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEG 133 >gi|90581055|ref|ZP_01236855.1| putative ATP-dependent DNA helicase Rep [Vibrio angustum S14] gi|90437751|gb|EAS62942.1| putative ATP-dependent DNA helicase Rep [Vibrio angustum S14] Length = 723 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 76/198 (38%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ LL + A P +++ Sbjct: 2 DVSLLLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLVHRIAWLLSVEQASPYSIMS 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM R+ E++ S Sbjct: 60 VTFTNKAAAEMRGRINELMHGSS------------------------------------- 82 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ T H C +++ L+A + F I D + +L+ + + + LD Sbjct: 83 -AGMWNGTFHGLCHRMLRAHYLDARLPEDFNILDSDDQMRLL----RRLIKAQNLDEKHW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PARQAAWYINAKKDEGLR 155 >gi|21666098|gb|AAM73555.1| DNA helicase II [Escherichia coli] gi|21666100|gb|AAM73556.1| DNA helicase II [Escherichia coli] gi|21666102|gb|AAM73557.1| DNA helicase II [Escherichia coli] gi|21666104|gb|AAM73558.1| DNA helicase II [Escherichia coli] gi|21666106|gb|AAM73559.1| DNA helicase II [Escherichia coli] gi|21666108|gb|AAM73560.1| DNA helicase II [Escherichia coli] gi|21666110|gb|AAM73561.1| DNA helicase II [Escherichia coli] gi|21666112|gb|AAM73562.1| DNA helicase II [Escherichia coli] gi|21666116|gb|AAM73564.1| DNA helicase II [Escherichia coli] gi|21666118|gb|AAM73565.1| DNA helicase II [Escherichia coli] gi|21666120|gb|AAM73566.1| DNA helicase II [Escherichia coli] gi|21666122|gb|AAM73567.1| DNA helicase II [Escherichia coli] gi|21666124|gb|AAM73568.1| DNA helicase II [Escherichia coli] gi|21666126|gb|AAM73569.1| DNA helicase II [Escherichia coli] gi|21666128|gb|AAM73570.1| DNA helicase II [Escherichia coli] gi|21666130|gb|AAM73571.1| DNA helicase II [Escherichia coli] gi|21666132|gb|AAM73572.1| DNA helicase II [Escherichia coli] gi|21666134|gb|AAM73573.1| DNA helicase II [Escherichia coli] gi|21666136|gb|AAM73574.1| DNA helicase II [Escherichia coli] gi|21666138|gb|AAM73575.1| DNA helicase II [Escherichia coli] gi|21666140|gb|AAM73576.1| DNA helicase II [Escherichia coli] gi|21666142|gb|AAM73577.1| DNA helicase II [Escherichia coli] gi|21666144|gb|AAM73578.1| DNA helicase II [Escherichia coli] gi|21666146|gb|AAM73579.1| DNA helicase II [Escherichia coli] gi|21666148|gb|AAM73580.1| DNA helicase II [Escherichia coli] gi|21666150|gb|AAM73581.1| DNA helicase II [Escherichia coli] gi|21666152|gb|AAM73582.1| DNA helicase II [Escherichia coli] gi|21666154|gb|AAM73583.1| DNA helicase II [Escherichia coli] gi|21666156|gb|AAM73584.1| DNA helicase II [Escherichia coli] gi|21666159|gb|AAM73585.1| DNA helicase II [Escherichia coli] gi|21666161|gb|AAM73586.1| DNA helicase II [Escherichia coli] gi|21666163|gb|AAM73587.1| DNA helicase II [Escherichia coli] gi|21666165|gb|AAM73588.1| DNA helicase II [Escherichia coli] gi|21666167|gb|AAM73589.1| DNA helicase II [Escherichia coli] gi|21666169|gb|AAM73590.1| DNA helicase II [Escherichia coli] gi|21666171|gb|AAM73591.1| DNA helicase II [Escherichia coli] gi|21666173|gb|AAM73592.1| DNA helicase II [Escherichia coli] gi|21666175|gb|AAM73593.1| DNA helicase II [Escherichia coli] gi|21666177|gb|AAM73594.1| DNA helicase II [Escherichia coli] gi|21666179|gb|AAM73595.1| DNA helicase II [Escherichia coli] gi|21666181|gb|AAM73596.1| DNA helicase II [Escherichia coli] gi|21666183|gb|AAM73597.1| DNA helicase II [Escherichia coli] gi|21666185|gb|AAM73598.1| DNA helicase II [Escherichia coli] gi|21666187|gb|AAM73599.1| DNA helicase II [Escherichia coli] gi|21666189|gb|AAM73600.1| DNA helicase II [Escherichia coli] gi|21666191|gb|AAM73601.1| DNA helicase II [Escherichia coli] gi|21666193|gb|AAM73602.1| DNA helicase II [Escherichia coli] gi|21666195|gb|AAM73603.1| DNA helicase II [Escherichia coli] gi|21666197|gb|AAM73604.1| DNA helicase II [Escherichia coli] gi|21666199|gb|AAM73605.1| DNA helicase II [Escherichia coli] gi|21666202|gb|AAM73606.1| DNA helicase II [Escherichia coli] gi|21666204|gb|AAM73607.1| DNA helicase II [Escherichia coli] gi|21666206|gb|AAM73608.1| DNA helicase II [Escherichia coli] gi|21666208|gb|AAM73609.1| DNA helicase II [Escherichia coli] gi|21666211|gb|AAM73610.1| DNA helicase II [Escherichia coli] gi|21666213|gb|AAM73611.1| DNA helicase II [Escherichia coli] gi|21666215|gb|AAM73612.1| DNA helicase II [Escherichia coli] gi|21666217|gb|AAM73613.1| DNA helicase II [Escherichia coli] gi|21666219|gb|AAM73614.1| DNA helicase II [Escherichia coli] gi|21666223|gb|AAM73616.1| DNA helicase II [Escherichia coli] gi|21666225|gb|AAM73617.1| DNA helicase II [Escherichia coli] gi|21666227|gb|AAM73618.1| DNA helicase II [Escherichia coli] gi|21666229|gb|AAM73619.1| DNA helicase II [Escherichia coli] gi|21666231|gb|AAM73620.1| DNA helicase II [Escherichia coli] gi|21666233|gb|AAM73621.1| DNA helicase II [Escherichia coli] gi|21666236|gb|AAM73622.1| DNA helicase II [Escherichia coli] gi|21666238|gb|AAM73623.1| DNA helicase II [Escherichia coli] gi|21666240|gb|AAM73624.1| DNA helicase II [Escherichia coli] gi|21666242|gb|AAM73625.1| DNA helicase II [Escherichia coli] gi|21666244|gb|AAM73626.1| DNA helicase II [Escherichia coli] Length = 133 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 43/175 (24%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 1 PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 60 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + GG+ V T H +++ Sbjct: 61 --------------------------------------SQGGMWVGTFHGLAHRLLRAHH 82 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++AN+ F I D E +L+ K + ++ LD + + + DE Sbjct: 83 MDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEG 133 >gi|56461651|ref|YP_156932.1| DNA-dependent helicase II [Idiomarina loihiensis L2TR] gi|56180661|gb|AAV83383.1| Superfamily I DNA helicase, UvrD [Idiomarina loihiensis L2TR] Length = 723 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 70/191 (36%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74 L + +Q S V A AGSGKT +LV R+ L+ P ++L +T T A Sbjct: 7 LADLNERQQQAVSATDGHMLVLAGAGSGKTRVLVHRIAWLIQERQYSPFSILAVTFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + G+ + Sbjct: 67 AAEMRGRVEQLVGSSVR--------------------------------------GMWIG 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H +++ ++ + +F I D + ++LI K + S+ LD+ K Sbjct: 89 TFHGLAHRLLRAHYMDVGLPQNFQIIDSDDQQRLI----KRLIKSLNLDDKRWPAKQAQW 144 Query: 195 ILEISNDEDIE 205 + DE + Sbjct: 145 YINGKKDEGLR 155 >gi|293392075|ref|ZP_06636409.1| DNA helicase II [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952609|gb|EFE02728.1| DNA helicase II [Aggregatibacter actinomycetemcomitans D7S-1] Length = 724 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 42/220 (19%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + +E +D ++ + E + A P + V A AGSGKT +L R+ L+ + +++ Sbjct: 2 DFAELLDGLNDKQREAVSA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVEGISEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + + L Sbjct: 60 VTFTNKAAAEMRHRIESVLSDGN---------------------------QRLF------ 86 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ V T H+ +++ L+A++ F I D E +LI+ K L + + Sbjct: 87 --GMWVGTFHSIAHRLLRAHHLDADLPQDFQILDSEDQLRLIKRLMK--LHNFEEKSFPP 142 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 + +Y + DE + D ++R + I + Y Sbjct: 143 KQACWY--INNKKDEGLRPNHIDDHNDRQEQEWIKIYQIY 180 >gi|268607993|ref|ZP_06141724.1| recombination helicase AddA [Ruminococcus flavefaciens FD-1] Length = 1213 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 35/222 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKA 73 ++ T+ +Q S S VSA AGSGKT +L +R+++L+ ++ +T T Sbjct: 1 MAWTEQQQNAISARGSSVIVSAAAGSGKTAVLTERLVQLMADPESGVRADRIVVVTFTND 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA+E+ R L ++ + + P+ + + + LL + K+ Sbjct: 61 AASELKKR---------------LDMKLRALISEDPSNGHLLRQQTLLQSA-------KI 98 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TI++FC +++ + IT+ F + DE + L A + D +++ Y Sbjct: 99 STINSFCFDLIRDNISDQGITTGFGVLDESDNTVLKARAMDELFEEMSRDEYDKIS-FLY 157 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 + I N++ + +IS + F S R K ++ Sbjct: 158 DKFCIRNEKRLREVISLMDG---------FLASVSLREKWLD 190 >gi|52842039|ref|YP_095838.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148359358|ref|YP_001250565.1| ATP-dependent DNA helicase [Legionella pneumophila str. Corby] gi|296107405|ref|YP_003619105.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella pneumophila 2300/99 Alcoy] gi|52629150|gb|AAU27891.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148281131|gb|ABQ55219.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella pneumophila str. Corby] gi|295649306|gb|ADG25153.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella pneumophila 2300/99 Alcoy] gi|307610513|emb|CBX00098.1| hypothetical protein LPW_18431 [Legionella pneumophila 130b] Length = 1076 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 5/203 (2%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 ++ A+DP S V A AGSGKT IL QR LRLL P ++ LT T+ AA+EM R Sbjct: 7 EQRSQATDPAESFIVQAPAGSGKTEILTQRFLRLLSTVQSPEQIIALTFTRKAASEMRER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 +++ + + + + + + + K + + +LE P LK+ TI + C+ Sbjct: 67 IVQALHMAASNQPAVSAHQQSTL---NFAKQALQRNNQYQWDLLEQPNRLKIITIDSLCQ 123 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 +I + PL ++ I++ S I A+ +I +E K ++ + Sbjct: 124 SINRAIPLLEKQVAYPDISETPDSHY-ISAARCCIQYAIATPEYQEAIKTLLLHVDNKQE 182 Query: 202 EDIETLISDIISNRTALKLIFFF 224 I+ L ++S R F Sbjct: 183 RLIQ-LFQALLSQRDQWLPTLFL 204 >gi|207092619|ref|ZP_03240406.1| ATP-dependent nuclease [Helicobacter pylori HPKX_438_AG0C1] Length = 210 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 13/186 (6%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIM 144 + E + I + K + A+ + L +++ TI AF ++I+ Sbjct: 65 KENLESEKEKSQNILKELEEKYHLKPDLVRNSAQKIYQRFLN--AEIRISTIDAFFQSIL 122 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN---D 201 ++F ++++F + E +K ++ + L+++ + EEL + L N D Sbjct: 123 RKFCWFVGLSANFEV--NEDTKAHQQQLNEGFLSALNGEQLEELSVFIAQCLSYDNYTSD 180 Query: 202 EDIETL 207 +E L Sbjct: 181 SILERL 186 >gi|300115039|ref|YP_003761614.1| UvrD/REP helicase [Nitrosococcus watsonii C-113] gi|299540976|gb|ADJ29293.1| UvrD/REP helicase [Nitrosococcus watsonii C-113] Length = 717 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 87/231 (37%), Gaps = 48/231 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67 + S ++ +++ + E A P V A AGSGKT +LV R+ L+ P LL Sbjct: 2 DISSLLNPLNKAQREAAAA--PPGHHLVLAGAGSGKTRVLVHRMAWLIRSQGIAPVNLLA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ E++ + Sbjct: 60 VTFTNKAAGEMRGRIEELLETPA------------------------------------- 82 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ EA + F I D E +LI + L ++ LD + Sbjct: 83 -GGMWVGTFHGIAHRLLRAHWQEAQLPQDFQILDSEDQYRLI----RRILQNLNLDESRW 137 Query: 188 LKKAFYEILEISNDEDIE-TLISDIISN--RTALKLIFFFFSYLWRRKIIE 235 + + D+ + + + + R +++ + S+ R +++ Sbjct: 138 PPRQAQWFINSHKDKGLRPQYLEEGTNPHVRQQIRIYHDYQSHCERSGLVD 188 >gi|289422630|ref|ZP_06424472.1| ATP-dependent nuclease subunit A [Peptostreptococcus anaerobius 653-L] gi|289156981|gb|EFD05604.1| ATP-dependent nuclease subunit A [Peptostreptococcus anaerobius 653-L] Length = 1375 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 34/226 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 TK ++ + + V+A AGSGKT +L++R++RL+L +P LL +T TKAAA Sbjct: 5 WTKDQESVIRHRNANLLVAAAAGSGKTAVLIERIIRLILDPVNPVDIDRLLVVTFTKAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I K P+ + + + R LL + T Sbjct: 65 REMRERV---------------GLAIEKELALDPDNTRLQRQRMLL-------NKADITT 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC ++M+ ++ I D + + L E + + +E+ F + Sbjct: 103 IDSFCNSVMRTNFHVIDLDPSVRIGDTAEIEILRNETIEDFFEKKYQEADEK----FLNL 158 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 ++ N + + D++ + F S + ++++ Sbjct: 159 VDTYNTRTNDNNLIDLV-----FTISNFVDSTPYPDLWLDEAAERF 199 >gi|167622483|ref|YP_001672777.1| DNA-dependent helicase II [Shewanella halifaxensis HAW-EB4] gi|167352505|gb|ABZ75118.1| DNA helicase II [Shewanella halifaxensis HAW-EB4] Length = 721 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 70/198 (35%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P S V A AGSGKT +L R+ L+ + P +L Sbjct: 2 DVSSLLDGLNDKQREAVGA--PQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYAILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV ++ Sbjct: 60 VTFTNKAAKEMRERVEKVAGG--------------------------------------N 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + + T H +++ +AN+ F I D + +LI K L S+ LD + Sbjct: 82 MSRMWIGTFHGLAHRLLRTHYKDANLPESFQILDSDDQLRLI----KRILKSLNLDEKQY 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + D + Sbjct: 138 PPRQAQGYINGKKDLGLR 155 >gi|160902562|ref|YP_001568143.1| UvrD/REP helicase [Petrotoga mobilis SJ95] gi|160360206|gb|ABX31820.1| UvrD/REP helicase [Petrotoga mobilis SJ95] Length = 1065 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 46/200 (23%), Positives = 94/200 (47%), Gaps = 19/200 (9%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH----PSTLLCLTHTKAAAAEMSHRV 82 DP R+ ++SA+AG+GKT+IL Q +++L N +L +T T AA+EM +R+ Sbjct: 12 IDDPNRNFFISASAGTGKTYILTQYFIKVLEKNFPNADIVDNILTVTFTNKAASEMKNRI 71 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 +E ++ ++++ Q K ++S++ ++TI +FC Sbjct: 72 MEEVSNKLDKKPPYGASKLEWYQYWNEVKINLSRS--------------WIKTIDSFCSR 117 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 I+++ + + +F+I + Q + +E + S L + L+ ++ + + L E Sbjct: 118 IIRENNISVGVDPNFSIISDFQRDREVERSVYSALR-VALEIYQDKEIDWLNFLSTKRKE 176 Query: 203 DIETLISDIISNRTALKLIF 222 IE + + +T K F Sbjct: 177 KIEKYVEALNEEKTKFKETF 196 >gi|317010231|gb|ADU80811.1| putative recombination protein RecB [Helicobacter pylori India7] Length = 948 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 13/186 (6%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEAIM 144 + E + I + K ++ A + L +++ TI AF ++I+ Sbjct: 65 KENLESEKEKSQNILKELEEKYRLNPSFVQNSAPKIYQRFLN--AEIRISTIDAFFQSIL 122 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS---ND 201 ++F ++++F + E +K ++ +S L+++ + EEL + L +D Sbjct: 123 RKFCWFVGLSANFEV--NENTKAHQQQLNESFLSALNGEQLEELSVFIAQCLSYDSYTSD 180 Query: 202 EDIETL 207 +E L Sbjct: 181 SILERL 186 >gi|52425423|ref|YP_088560.1| DNA-dependent helicase II [Mannheimia succiniciproducens MBEL55E] gi|52307475|gb|AAU37975.1| UvrD protein [Mannheimia succiniciproducens MBEL55E] Length = 727 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 37/158 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + +++ Sbjct: 3 DISELLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIAVEGISEGSIMA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM R+ ++ S +R L Sbjct: 61 VTFTNKAAAEMRQRIESTLSQHS--------------------------SRRLF------ 88 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G+ V T H+ +++ L+AN+ F I D E Sbjct: 89 --GMWVGTFHSIAHRLLRAHYLDANLPQDFQILDSEDQ 124 >gi|323499636|ref|ZP_08104604.1| DNA-dependent helicase II [Vibrio sinaloensis DSM 21326] gi|323315237|gb|EGA68280.1| DNA-dependent helicase II [Vibrio sinaloensis DSM 21326] Length = 723 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 88/229 (38%), Gaps = 48/229 (20%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 4 SLLLDGLNDKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ + Sbjct: 62 FTNKAAAEMRGRIEELMMG--------------------------------------SAS 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + +L+ + + + LD + Sbjct: 84 GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDTDDQVRLL----RRLIKAQNLDEKQWPA 139 Query: 190 KAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235 K + DE + D + +T L+L + R +++ Sbjct: 140 KQVAWWINGKKDEGLRPNHIDAFHDPITKTYLQLYTAYQEACDRAGLVD 188 >gi|119468303|ref|ZP_01611429.1| DNA-dependent ATPase I and helicase II [Alteromonadales bacterium TW-7] gi|119448296|gb|EAW29560.1| DNA-dependent ATPase I and helicase II [Alteromonadales bacterium TW-7] Length = 721 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + + + A P ++ V A AGSGKT +LV R+ L+ + A ++ Sbjct: 2 DVSELLDGLNDKQRDAVAA--PLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASAYSIFA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV E + A Sbjct: 60 VTFTNKAAKEMRTRVEETLKAPV------------------------------------- 82 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H I++ EAN+ F I D + ++I K L S+ +D+ + Sbjct: 83 -GGMWIGTFHGLSHRILRAHHREANLPEAFQILDSDDQLRMI----KRLLKSMNIDDKKW 137 Query: 188 LKKAFYEILEISNDEDIE 205 K F + DE + Sbjct: 138 PAKQFGWYISAKKDEALR 155 >gi|315125235|ref|YP_004067238.1| DNA-dependent helicase II [Pseudoalteromonas sp. SM9913] gi|315013748|gb|ADT67086.1| DNA-dependent helicase II [Pseudoalteromonas sp. SM9913] Length = 721 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + + + A P ++ V A AGSGKT +LV R+ L+ + A ++ Sbjct: 2 DVSELLDGLNDKQRDAVAA--PLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASAYSIFA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV E + A Sbjct: 60 VTFTNKAAKEMRSRVEETLKAPV------------------------------------- 82 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H I++ EAN+ F I D + ++I K L S+ +D+ + Sbjct: 83 -GGMWIGTFHGLSHRILRAHHREANLPEAFQILDSDDQLRMI----KRLLKSMNIDDKKW 137 Query: 188 LKKAFYEILEISNDEDIE 205 K F + DE + Sbjct: 138 PAKQFGWYISAKKDEALR 155 >gi|60117407|gb|AAX14460.1| helicase, UvrD/Rep/AddA family [Wolbachia endosymbiont of Drosophila mojavensis] Length = 208 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 62/175 (35%), Positives = 92/175 (52%), Gaps = 33/175 (18%) Query: 7 FQEHSETIDLISQTKSEQLL----ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62 F + +L++ K LL A +P S WV+A+AG+GKT IL+ RVLRLLL N Sbjct: 35 FLHYMYNANLVNFYKVLALLMRSNAINPNFSVWVNASAGTGKTKILIDRVLRLLLENK-- 92 Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQ----------------- 105 +LCLT T AAA EM +R+ I++ W+ SD +L+A++ ++ Sbjct: 93 RNILCLTFTNAAANEMENRIHSILSKWAICSDSVLAADLEQLDFFPMSSQCVTLGSQHPY 152 Query: 106 --------GKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 G + NK +++AR L + GL +QTIHAFC ++ FP+EA Sbjct: 153 LSSQCVTLGSRKNKDYLTRARRLFSELENL--GLTIQTIHAFCYKLISSFPIEAG 205 >gi|262172714|ref|ZP_06040392.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus MB-451] gi|261893790|gb|EEY39776.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus MB-451] Length = 723 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ T Sbjct: 63 FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD+ + Sbjct: 85 GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 RQVAWWINNQKDEGLR 156 >gi|261213182|ref|ZP_05927465.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC341] gi|260837600|gb|EEX64294.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC341] Length = 723 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ T Sbjct: 63 FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD+ + Sbjct: 85 GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 RQVAWWINNQKDEGLR 156 >gi|121587578|ref|ZP_01677344.1| DNA helicase II [Vibrio cholerae 2740-80] gi|229527306|ref|ZP_04416699.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae 12129(1)] gi|121548216|gb|EAX58286.1| DNA helicase II [Vibrio cholerae 2740-80] gi|229335314|gb|EEO00798.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae 12129(1)] Length = 723 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ T Sbjct: 63 FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD+ + Sbjct: 85 GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 RQVAWWINNQKDEGLR 156 >gi|15640220|ref|NP_229847.1| DNA-dependent helicase II [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121728028|ref|ZP_01681067.1| DNA helicase II [Vibrio cholerae V52] gi|147675309|ref|YP_001218450.1| DNA-dependent helicase II [Vibrio cholerae O395] gi|153818562|ref|ZP_01971229.1| DNA helicase II [Vibrio cholerae NCTC 8457] gi|153821587|ref|ZP_01974254.1| DNA helicase II [Vibrio cholerae B33] gi|229507007|ref|ZP_04396515.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae BX 330286] gi|229509377|ref|ZP_04398860.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae B33] gi|229516324|ref|ZP_04405772.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC9] gi|229606515|ref|YP_002877163.1| DNA-dependent helicase II [Vibrio cholerae MJ-1236] gi|254226330|ref|ZP_04919920.1| DNA helicase II [Vibrio cholerae V51] gi|254851318|ref|ZP_05240668.1| DNA-dependent helicase II [Vibrio cholerae MO10] gi|255744002|ref|ZP_05417956.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholera CIRS 101] gi|262153639|ref|ZP_06028766.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae INDRE 91/1] gi|262167390|ref|ZP_06035098.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC27] gi|9654595|gb|AAF93366.1| DNA helicase II [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121629731|gb|EAX62150.1| DNA helicase II [Vibrio cholerae V52] gi|125621135|gb|EAZ49479.1| DNA helicase II [Vibrio cholerae V51] gi|126510901|gb|EAZ73495.1| DNA helicase II [Vibrio cholerae NCTC 8457] gi|126520874|gb|EAZ78097.1| DNA helicase II [Vibrio cholerae B33] gi|146317192|gb|ABQ21731.1| DNA helicase II [Vibrio cholerae O395] gi|227012037|gb|ACP08247.1| DNA helicase II [Vibrio cholerae O395] gi|229346750|gb|EEO11720.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC9] gi|229353692|gb|EEO18629.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae B33] gi|229356112|gb|EEO21031.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae BX 330286] gi|229369170|gb|ACQ59593.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae MJ-1236] gi|254847023|gb|EET25437.1| DNA-dependent helicase II [Vibrio cholerae MO10] gi|255738267|gb|EET93658.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholera CIRS 101] gi|262024192|gb|EEY42885.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae RC27] gi|262030580|gb|EEY49217.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae INDRE 91/1] Length = 723 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ T Sbjct: 63 FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD+ + Sbjct: 85 GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 RQVAWWINNQKDEGLR 156 >gi|262404930|ref|ZP_06081482.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC586] gi|262348769|gb|EEY97910.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio sp. RC586] Length = 723 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ T Sbjct: 63 FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD+ + Sbjct: 85 GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 RQVAWWINNQKDEGLR 156 >gi|258625863|ref|ZP_05720738.1| DNA helicase II [Vibrio mimicus VM603] gi|262163724|ref|ZP_06031464.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus VM223] gi|258581827|gb|EEW06701.1| DNA helicase II [Vibrio mimicus VM603] gi|262027704|gb|EEY46369.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio mimicus VM223] Length = 723 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ T Sbjct: 63 FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD+ + Sbjct: 85 GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 RQVAWWINNQKDEGLR 156 >gi|153825962|ref|ZP_01978629.1| DNA helicase II [Vibrio cholerae MZO-2] gi|149740370|gb|EDM54506.1| DNA helicase II [Vibrio cholerae MZO-2] Length = 723 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ T Sbjct: 63 FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD+ + Sbjct: 85 GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 RQVAWWINNQKDEGLR 156 >gi|254291625|ref|ZP_04962414.1| DNA helicase II [Vibrio cholerae AM-19226] gi|150422482|gb|EDN14440.1| DNA helicase II [Vibrio cholerae AM-19226] Length = 723 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ T Sbjct: 63 FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD+ + Sbjct: 85 GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 RQVAWWINNQKDEGLR 156 >gi|153216919|ref|ZP_01950683.1| DNA helicase II [Vibrio cholerae 1587] gi|153830867|ref|ZP_01983534.1| DNA helicase II [Vibrio cholerae 623-39] gi|227080412|ref|YP_002808963.1| DNA helicase II [Vibrio cholerae M66-2] gi|229512494|ref|ZP_04401966.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TMA 21] gi|262191258|ref|ZP_06049454.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae CT 5369-93] gi|298500833|ref|ZP_07010635.1| DNA helicase II [Vibrio cholerae MAK 757] gi|124114039|gb|EAY32859.1| DNA helicase II [Vibrio cholerae 1587] gi|148873656|gb|EDL71791.1| DNA helicase II [Vibrio cholerae 623-39] gi|227008300|gb|ACP04512.1| DNA helicase II [Vibrio cholerae M66-2] gi|229350493|gb|EEO15441.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TMA 21] gi|262032863|gb|EEY51405.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae CT 5369-93] gi|297540337|gb|EFH76396.1| DNA helicase II [Vibrio cholerae MAK 757] Length = 723 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ T Sbjct: 63 FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD+ + Sbjct: 85 GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 RQVAWWINNQKDEGLR 156 >gi|153800815|ref|ZP_01955401.1| DNA helicase II [Vibrio cholerae MZO-3] gi|229521109|ref|ZP_04410530.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TM 11079-80] gi|124123646|gb|EAY42389.1| DNA helicase II [Vibrio cholerae MZO-3] gi|229341994|gb|EEO06995.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae TM 11079-80] gi|327483072|gb|AEA77479.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae LMA3894-4] Length = 723 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ T Sbjct: 63 FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD+ + Sbjct: 85 GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 RQVAWWINNQKDEGLR 156 >gi|229524854|ref|ZP_04414259.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae bv. albensis VL426] gi|229338435|gb|EEO03452.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio cholerae bv. albensis VL426] Length = 723 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ T Sbjct: 63 FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD+ + Sbjct: 85 GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 RQVAWWINNQKDEGLR 156 >gi|261250055|ref|ZP_05942632.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio orientalis CIP 102891] gi|260939559|gb|EEX95544.1| ATP-dependent DNA helicase UvrD/PcrA [Vibrio orientalis CIP 102891] Length = 723 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 48/229 (20%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P +A V A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 4 SLLLDGLNDKQREAVAA--PLENALVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ EI+ + Sbjct: 62 FTNKAAAEMRGRIEEIMMG--------------------------------------SAS 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + +L+ + + + LD + Sbjct: 84 GMWNGTFHGICHRILRAHYLDATLPEDFQIIDTDDQVRLL----RRLIKAQNLDEKQWPA 139 Query: 190 KAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235 K + DE + D + +T L+L + R +++ Sbjct: 140 KQVAWWINGKKDEGLRPNHIDAYGDPITKTYLQLYSAYQEACDRAGLVD 188 >gi|297581630|ref|ZP_06943552.1| DNA helicase II [Vibrio cholerae RC385] gi|297534037|gb|EFH72876.1| DNA helicase II [Vibrio cholerae RC385] Length = 723 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ T Sbjct: 63 FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD+ + Sbjct: 85 GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 RQVAWWINNQKDEGLR 156 >gi|322383647|ref|ZP_08057398.1| ATP-dependent deoxyribonuclease-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151859|gb|EFX44802.1| ATP-dependent deoxyribonuclease-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 1350 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 92/206 (44%), Gaps = 32/206 (15%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWS 90 ++A AGSGKT +LV+R++R + P LL T TKAAA+EM R+ E + Sbjct: 1 MLIAAAAGSGKTAVLVERIIRRISDEREPVDVDRLLVATFTKAAASEMKERIREAL---- 56 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 K K+P + + L+ G + T+H+FC ++++ Sbjct: 57 -----------EKELLKRPQSPHLRRQLALM-------GRANITTLHSFCLDVIRRHFAS 98 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISD 210 ++ F I+ E +++ + ++ + + ++ E+ F+++++ E ++ + Sbjct: 99 IHLDPVFRISGETETELMRQDVLEELMEEYYENSAED--SPFWKLVDSFGGEHSDSGLVR 156 Query: 211 IISNRTALKLIFFFFSYLWRRKIIEK 236 ++ KL S+ W +++ Sbjct: 157 LVQ-----KLYDESRSHPWPDYWLKE 177 >gi|297616711|ref|YP_003701870.1| recombination helicase AddA [Syntrophothermus lipocalidus DSM 12680] gi|297144548|gb|ADI01305.1| recombination helicase AddA [Syntrophothermus lipocalidus DSM 12680] Length = 1250 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 95/226 (42%), Gaps = 34/226 (15%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 ++ + + + + + VSA AG+GKT +LV R++ L +P + LL +T+ Sbjct: 1 MENSAWSSEQLDAINWRGGNLLVSAAAGTGKTAVLVGRIMGHLKDPVNPIDINRLLVVTY 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAAEM R+ AE+ + P + + LL Sbjct: 61 TNAAAAEMRERIR---------------AELASEISRNPESMHLRRQMILL-------ND 98 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + T+H+FC ++++ + F +ADE +++ + L +++ + Sbjct: 99 ACIATMHSFCLDVVREHFYMVGLDPAFRLADETEAEL----LQLEVLEALLEEKYAGGDA 154 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +F+ ++++ E + + +++ LKL F S + + Sbjct: 155 SFFALVDLYGGERDDEGLKELV-----LKLFRFSRSLPCPGDWLRQ 195 >gi|163803195|ref|ZP_02197077.1| DNA helicase II [Vibrio sp. AND4] gi|159173016|gb|EDP57850.1| DNA helicase II [Vibrio sp. AND4] Length = 724 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D +++ + E + A P + V A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 5 SLLLDGLNEKQREAVAA--PLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMSVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ + G Sbjct: 63 FTNKAAAEMRGRIEELMMG--------------------------------------STG 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD+ + Sbjct: 85 GMWNGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAQNLDDKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 RQVAWWINAKKDEGLR 156 >gi|109900377|ref|YP_663632.1| DNA helicase II [Pseudoalteromonas atlantica T6c] gi|109702658|gb|ABG42578.1| DNA helicase II [Pseudoalteromonas atlantica T6c] Length = 724 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 77/220 (35%), Gaps = 45/220 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ++ ++ + + + P + A AGSGKT +LV R+ L+ + P +L Sbjct: 2 DVSRLLEQLNDKQRDAVA--SPAADMLILAGAGSGKTRVLVHRIAWLMEVEGIAPWGILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ E+ + Sbjct: 60 VTFTNKAAREMRGRIEELQGS--------------------------------------A 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + + T H +++ EA + +F I D + +L + + S+ LD + Sbjct: 82 LSNMWIGTFHGIAHRLLRTHYAEAKLPENFQILDSDDQYRL----VRRVIKSMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 K + + DE + D + KL + Y Sbjct: 138 APKHVQWYINGNKDEGLRPEHIDTHGDYNQKKLCEIYQVY 177 >gi|253996791|ref|YP_003048855.1| UvrD/REP helicase [Methylotenera mobilis JLW8] gi|253983470|gb|ACT48328.1| UvrD/REP helicase [Methylotenera mobilis JLW8] Length = 1118 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 97/210 (46%), Gaps = 7/210 (3%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 EH+ + ++ +L A D S V A AG+GKT +L QR L+LL P ++ + Sbjct: 4 EHTSAAEALALDAQNRLRALD-LASFIVEAPAGAGKTELLTQRYLKLLQTVNAPEEIIAI 62 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AAAEM R+L+ + + + A+ K + + + +++ ++E P Sbjct: 63 TFTNKAAAEMRLRILDSL---LKADSKEMPAQPHKQITYELSLKALQQSKQKNWQLIENP 119 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 L++ TI + C + +Q PL + + + + L +A + LA + + +L Sbjct: 120 SRLRIFTIDSLCAHLARQMPLMSRFGAQPQVT--TDAGVLYAQAAEQALALVNGTEHSDL 177 Query: 189 KKAFYEILEISNDEDIETLISDIISNRTAL 218 K ++ +++ ++ L+ ++ R Sbjct: 178 VKTALRYVDNDSNQ-LKNLLVKMLEKRDQW 206 >gi|261868383|ref|YP_003256305.1| DNA-dependent helicase II [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413715|gb|ACX83086.1| DNA helicase II [Aggregatibacter actinomycetemcomitans D11S-1] Length = 724 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 89/220 (40%), Gaps = 42/220 (19%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + +E +D ++ + E + A P + V A AGSGKT +L R+ L+ + +++ Sbjct: 2 DFAELLDGLNDKQREAVSA--PLGNYLVLAGAGSGKTRVLTNRIAWLIGVEGISEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + + L Sbjct: 60 VTFTNKAAAEMRHRIESVLSDGN---------------------------QRLF------ 86 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ V T H+ +++ L+A++ F I D E +LI+ K L S + Sbjct: 87 --GMWVGTFHSIAHRLLRAHHLDADLPQDFQILDSEDQLRLIKRLMK--LHSFDEKSFPP 142 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 + +Y + DE + D ++R + I + Y Sbjct: 143 KQACWY--INNKKDEGLRPNQIDDHNDRQEREWIKIYQIY 180 >gi|295696731|ref|YP_003589969.1| Exodeoxyribonuclease V [Bacillus tusciae DSM 2912] gi|295412333|gb|ADG06825.1| Exodeoxyribonuclease V [Bacillus tusciae DSM 2912] Length = 1259 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 79/195 (40%), Gaps = 42/195 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL------------------ 57 ++ T+ + + V+A AGSGKT +L +R +L Sbjct: 1 MLRPTEDQWRAITAIRSDVVVTAGAGSGKTWVLTERYAAMLNGRPTLPPPEETDAPIPTG 60 Query: 58 ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA 117 A P ++ +T T+AAAA+M ++ + + L +++ Sbjct: 61 APCRPGEIIAITFTEAAAADMRRKIRARLRQLIEAGETRLLPYEEELETAP--------- 111 Query: 118 RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 + TIH++C ++++++P EA + F + DE ++++L+ E+ + L Sbjct: 112 ---------------ISTIHSYCASLIRRYPFEAGVDPDFVVLDEPEARRLLRESAQEAL 156 Query: 178 ASIMLDNNEELKKAF 192 + + ++ A Sbjct: 157 MEALKEEEPAVRSAL 171 >gi|68536650|ref|YP_251355.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium K411] gi|68264249|emb|CAI37737.1| putative ATP-dependent DNA helicase II [Corynebacterium jeikeium K411] Length = 830 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 85/235 (36%), Gaps = 75/235 (31%) Query: 16 LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 L+ +Q A + S + A AGSGKT +L +R+ LL P +L +T T A Sbjct: 13 LLEGLNPQQRQAVEHMGSPLLIVAGAGSGKTSVLTRRIAYLLANGVAPWQILAITFTNKA 72 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV++++ + + V Sbjct: 73 AAEMRERVMDMVGPQAE--------------------------------------RMWVS 94 Query: 135 TIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKL----IEEAKKST------------- 176 T H+FC +++ A + ++F+I D + SK+L I++A Sbjct: 95 TFHSFCVRVLRANAHLAPGLNTNFSIYDSDDSKRLMTMIIKDASLDLKEFSPRGVLNVIS 154 Query: 177 ------------LASIMLDNNEE------LKKAFYEILEISNDEDIETLISDIIS 213 L D+N L K + L +N D + LI ++++ Sbjct: 155 NWKNELVGPVGALEEAQRDSNPHTAQIATLYKTYQNRLRAANAVDFDDLIGEVVA 209 >gi|313115007|ref|ZP_07800500.1| putative ATP-dependent nuclease subunit A [Faecalibacterium cf. prausnitzii KLE1255] gi|310622698|gb|EFQ06160.1| putative ATP-dependent nuclease subunit A [Faecalibacterium cf. prausnitzii KLE1255] Length = 1240 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 91/223 (40%), Gaps = 36/223 (16%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T +++ D + VSA AGSGKT +L +R +RL+ HP LL +T T AAA Sbjct: 6 WTPAQRAAIEDRGGALLVSAAAGSGKTAVLTERAVRLITDPDHPVDADKLLIVTFTNAAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AE+ R+ + + S ++P+ + + + R LL + T Sbjct: 66 AELRARIGQALLRLSQ---------------QQPHNTSLRRQRMLLQRAP-------ICT 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I AFC ++ + +I FA AD + L A TL + D + AF ++ Sbjct: 104 IDAFCLDLLHKHFQALDIPPDFAPADPGSVEVLRASALAETLENAYRDPD---FCAFADL 160 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFF------FSYLWRRK 232 + + I+ L+ + + + W+R+ Sbjct: 161 --YGKGRTDQAAGNTILHVYDFLRALPDYDRRLDEYLTPWQRE 201 >gi|192360051|ref|YP_001984019.1| DNA-dependent helicase II [Cellvibrio japonicus Ueda107] gi|190686216|gb|ACE83894.1| DNA helicase II [Cellvibrio japonicus Ueda107] Length = 769 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 81/201 (40%), Gaps = 35/201 (17%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 +F + S +D ++ + E + A P + + A AGSGKT +LV R+ L+ + P + Sbjct: 27 AFMDVSHLLDNLNDAQREAVSA--PAGNQLILAGAGSGKTRVLVHRIAWLIQVEQVSPYS 84 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 ++ +T T AA EM R+ DE+ +T + N Sbjct: 85 IMAVTFTNKAAREMRARL-----------DELFGQSLTDSGSQHINSR------------ 121 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 + V T H +++ +A + +F I D + ++I+ + + LD+ Sbjct: 122 -----AMWVGTFHGLAHRLLKAHWQDAGLPQNFQILDSDDQLRMIKRVYQQ----LNLDD 172 Query: 185 NEELKKAFYEILEISNDEDIE 205 ++ + + DE + Sbjct: 173 SKWPHRQAIWYINGQKDEGLR 193 >gi|313903519|ref|ZP_07836910.1| ATP-dependent DNA helicase PcrA [Thermaerobacter subterraneus DSM 13965] gi|313466340|gb|EFR61863.1| ATP-dependent DNA helicase PcrA [Thermaerobacter subterraneus DSM 13965] Length = 791 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 61/162 (37%), Gaps = 39/162 (24%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 DL++ Q A + P V A AGSGKT +L +RV LL P +L +T T Sbjct: 3 DLLADLNPAQREAVTHPGGPVLVLAGAGSGKTRVLTRRVAYLLEQGVAPHQILAITFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ A + + + Sbjct: 63 AAREMRERVEQLVGAGAR--------------------------------------DMWI 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T HA C I+++ +F I DE+ + ++ E K Sbjct: 85 GTFHASCVRILRRDGYRIGYDRNFVILDEDDRRAVLREVLKE 126 >gi|149191373|ref|ZP_01869625.1| DNA-dependent helicase II [Vibrio shilonii AK1] gi|148834790|gb|EDL51775.1| DNA-dependent helicase II [Vibrio shilonii AK1] Length = 723 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 77/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P V A AGSGKT +LV R+ L+ + NA P +++ +T Sbjct: 4 SLLLDGLNDKQREAVAA--PLEHMLVLAGAGSGKTRVLVHRIAWLMSVENASPFSIMSVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ S Sbjct: 62 FTNKAAAEMRGRIEELMMGSS--------------------------------------S 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD + Sbjct: 84 GMWNGTFHGICHRILRAHYLDAKLPEDFQILDSDDQQRLL----KRLIKAQNLDEKQWPA 139 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 140 RQAAWWINGKKDEGLR 155 >gi|21666221|gb|AAM73615.1| DNA helicase II [Escherichia coli] Length = 133 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 43/175 (24%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 1 PRTNLLVLAGAGSGKTRVLVHRFAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 60 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + GG+ V T H +++ Sbjct: 61 --------------------------------------SQGGMWVGTFHGLAHRLLRAHH 82 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++AN+ F I D E +L+ K + ++ LD + + + DE Sbjct: 83 MDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEG 133 >gi|332034801|gb|EGI71338.1| ATP-dependent DNA helicase UvrD/PcrA [Pseudoalteromonas haloplanktis ANT/505] Length = 721 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 79/198 (39%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D ++ + + + A P ++ V A AGSGKT +LV R+ L+ + A ++ Sbjct: 2 DVSQLLDGLNDKQRDAVAA--PLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASAYSIFA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV E + A Sbjct: 60 VTFTNKAAKEMRSRVEETLKAPV------------------------------------- 82 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H I++ EAN+ F I D + ++I K L S+ +D+ + Sbjct: 83 -GGMWIGTFHGLSHRILRAHHREANLPEAFQILDSDDQLRMI----KRLLKSMNIDDKKW 137 Query: 188 LKKAFYEILEISNDEDIE 205 K F + DE + Sbjct: 138 PAKQFGWYISAKKDEALR 155 >gi|289807663|ref|ZP_06538292.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 120 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 41/159 (25%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 ++ + E + A P + V A AGSGKT +LV R+ LL + N P +++ +T T AA Sbjct: 2 LNDKQREAVAA--PRSNMLVLAGAGSGKTRVLVHRIAWLLSVENNSPYSIMAVTFTNKAA 59 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM HR+ +++ + GG+ V T Sbjct: 60 AEMRHRIGQLMGT--------------------------------------SQGGMWVGT 81 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 H +++ ++AN+ F I D E +L++ K Sbjct: 82 FHGLAHRLLRAHHMDANLPQDFQILDSEDQMRLLKRLIK 120 >gi|152985841|ref|YP_001351544.1| DNA-dependent helicase II [Pseudomonas aeruginosa PA7] gi|150960999|gb|ABR83024.1| DNA helicase II [Pseudomonas aeruginosa PA7] Length = 728 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 43/184 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81 ++ + P V A AGSGKT +LV R+ L+ + +A P ++L +T T AAAEM HR Sbjct: 16 QRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLIQVEHASPYSILSVTFTNKAAAEMRHR 75 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + +++ P G+ V T H Sbjct: 76 IEQLLGI--------------------------------------NPAGMWVGTFHGLAH 97 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 +++ EA ++ +F I D + ++L K + + LD + + D Sbjct: 98 RLLRAHWREAGLSENFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWFINGQKD 153 Query: 202 EDIE 205 E + Sbjct: 154 EGLR 157 >gi|78486038|ref|YP_391963.1| UvrD/REP helicase [Thiomicrospira crunogena XCL-2] gi|78364324|gb|ABB42289.1| UvrD/REP helicase [Thiomicrospira crunogena XCL-2] Length = 1182 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 59/231 (25%), Positives = 98/231 (42%), Gaps = 15/231 (6%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D + A P S V A AGSGKT +L QR L LL P ++ +T TK Sbjct: 28 ILDEALPDGKARFQAIHPQHSYIVQAPAGSGKTALLTQRFLALLSQVETPEQVVAMTFTK 87 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+LE + DE SA I ++ + + +L+ P L+ Sbjct: 88 KAAAEMRERILEALHFGLTSLDE--SASIYDQNTWHLAQAALQNNQQRQWKLLDNPNRLR 145 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 ++TI + ++QQ PL + + + +A + L +A + L + + +A Sbjct: 146 IRTIDSMNGYLVQQMPLLSRLGAQPQVASMNDT--LYLKAVRLALK------DADTTEAS 197 Query: 193 YEILEISND--EDIETLISDIISNRTAL---KLIFFFFSYLWRRKIIEKSL 238 +L + N E L+ ++ R L + + R +EK+L Sbjct: 198 ASLLRLVNGNYRSAENLLVTMLKKRDQWMGALLSYGQDAEAQERAELEKAL 248 >gi|296392306|ref|ZP_06881781.1| DNA-dependent helicase II [Pseudomonas aeruginosa PAb1] Length = 728 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 43/184 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81 ++ + P V A AGSGKT +LV R+ L+ + +A P ++L +T T AAAEM HR Sbjct: 16 QRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLIQVEHASPYSILSVTFTNKAAAEMRHR 75 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + +++ P G+ V T H Sbjct: 76 IEQLLGI--------------------------------------NPAGMWVGTFHGLAH 97 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 +++ EA ++ +F I D + ++L K + + LD + + D Sbjct: 98 RLLRAHWREAGLSENFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWFINGQKD 153 Query: 202 EDIE 205 E + Sbjct: 154 EGLR 157 >gi|15600636|ref|NP_254130.1| DNA-dependent helicase II [Pseudomonas aeruginosa PAO1] gi|107104547|ref|ZP_01368465.1| hypothetical protein PaerPA_01005625 [Pseudomonas aeruginosa PACS2] gi|218894546|ref|YP_002443416.1| DNA-dependent helicase II [Pseudomonas aeruginosa LESB58] gi|313111618|ref|ZP_07797417.1| DNA helicase II [Pseudomonas aeruginosa 39016] gi|9951773|gb|AAG08828.1|AE004957_3 DNA helicase II [Pseudomonas aeruginosa PAO1] gi|7229494|gb|AAF42852.1| mismatch repair protein MutU [Pseudomonas aeruginosa PAO1] gi|218774775|emb|CAW30592.1| DNA helicase II [Pseudomonas aeruginosa LESB58] gi|310883919|gb|EFQ42513.1| DNA helicase II [Pseudomonas aeruginosa 39016] Length = 728 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 43/184 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81 ++ + P V A AGSGKT +LV R+ L+ + +A P ++L +T T AAAEM HR Sbjct: 16 QRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLIQVEHASPYSILSVTFTNKAAAEMRHR 75 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + +++ P G+ V T H Sbjct: 76 IEQLLGI--------------------------------------NPAGMWVGTFHGLAH 97 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 +++ EA ++ +F I D + ++L K + + LD + + D Sbjct: 98 RLLRAHWREAGLSENFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWFINGQKD 153 Query: 202 EDIE 205 E + Sbjct: 154 EGLR 157 >gi|254237872|ref|ZP_04931195.1| DNA helicase II [Pseudomonas aeruginosa C3719] gi|254242995|ref|ZP_04936317.1| DNA helicase II [Pseudomonas aeruginosa 2192] gi|126169803|gb|EAZ55314.1| DNA helicase II [Pseudomonas aeruginosa C3719] gi|126196373|gb|EAZ60436.1| DNA helicase II [Pseudomonas aeruginosa 2192] Length = 728 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 43/184 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81 ++ + P V A AGSGKT +LV R+ L+ + +A P ++L +T T AAAEM HR Sbjct: 16 QRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLIQVEHASPYSILSVTFTNKAAAEMRHR 75 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + +++ P G+ V T H Sbjct: 76 IEQLLGI--------------------------------------NPAGMWVGTFHGLAH 97 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 +++ EA ++ +F I D + ++L K + + LD + + D Sbjct: 98 RLLRAHWREAGLSENFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWFINGQKD 153 Query: 202 EDIE 205 E + Sbjct: 154 EGLR 157 >gi|240139167|ref|YP_002963642.1| UvrD/REP helicase [Methylobacterium extorquens AM1] gi|240009139|gb|ACS40365.1| UvrD/REP helicase [Methylobacterium extorquens AM1] Length = 1124 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 7/166 (4%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 ++ L + RS V A AGSGKT ++ R+ +L A P ++ +T T+ AA Sbjct: 7 GLADAAQRALAMTAHDRSLLVEAGAGSGKTALMAGRIAMMLAAGVAPGSIAAVTFTELAA 66 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +E+ RV E++ L + + E+ + + R L+ E L T Sbjct: 67 SELLERVGEVVG---RLVEGQVPEELRVVLPNGLSPD----QRARLVEAGEHLDALACTT 119 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 IH FC+ +++ +P+EA+I +ADE ++ + ++ + L + Sbjct: 120 IHGFCQRLVKPYPVEADIDPGARVADEAEADGIFQDLRDGWLRECL 165 >gi|323701383|ref|ZP_08113057.1| recombination helicase AddA [Desulfotomaculum nigrificans DSM 574] gi|323533642|gb|EGB23507.1| recombination helicase AddA [Desulfotomaculum nigrificans DSM 574] Length = 1243 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 94/220 (42%), Gaps = 34/220 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 TK + R+ V+A AG+GKT +LV+R++R++ +P LL +T T AAA Sbjct: 6 WTKEQLAAIETRGRNLLVAAAAGAGKTAVLVERIIRMITDPVNPVEIDKLLVVTFTNAAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ ++K P +S+ LL + T Sbjct: 66 AEMRERI---------------GLALSKALNANPRSGHLSRQLALL-------NRASITT 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+FC +++++ + ++ F +ADE +++ L E + +N F + Sbjct: 104 LHSFCLDLLRRYFYQLDLDPSFRVADEVEAELLRLEVLEELFEQRYNSDN----TTFTTL 159 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 ++ + + D++ L+L F S+ W + + Sbjct: 160 VDAYGGPRDDAKLQDLV-----LELYRFSGSHPWPKHWLS 194 >gi|311112208|ref|YP_003983430.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa ATCC 17931] gi|310943702|gb|ADP39996.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa ATCC 17931] Length = 957 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ID ++ + E +L S + A AGSGKT +L R+ LL A P +L +T T Sbjct: 114 LIDGLNDRQREAVLHS--GSPLLIVAGAGSGKTRVLTHRIAHLLATGRATPGQILAITFT 171 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM R+ +I +A+H + Sbjct: 172 NKAAAEMRERIQALIG---------------------------PRAQH-----------M 193 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+FC ++++ + S F I D S++L+ K Sbjct: 194 WISTFHSFCVRVLRREAKALGLKSTFTIYDSADSQRLLTLIIKEL 238 >gi|108563927|ref|YP_628243.1| putative recombination protein RecB [Helicobacter pylori HPAG1] gi|107837700|gb|ABF85569.1| ATP-dependent nuclease [Helicobacter pylori HPAG1] Length = 953 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 15/188 (7%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW- 89 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 90 -SHLSDEILSAEITKIQGKKPNKSDMSK------ARHLLITILETPGGLKVQTIHAFCEA 142 +L +E + I + K + A + L +++ TI AF ++ Sbjct: 65 KENLENENKKEKSQNILKELEEKYHLDPSLVRNSAPKIYQRFLN--AEIRISTIDAFFQS 122 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS--- 199 I+++F ++++F + E +K ++ L+++ + EEL + L Sbjct: 123 ILRKFCWFVGLSANFEV--NEDTKAHQQQLNDGFLSALNNEQLEELSVFIVQCLSYDSYT 180 Query: 200 NDEDIETL 207 +D +E L Sbjct: 181 SDSILERL 188 >gi|40789159|emb|CAE84140.1| putative helicase [Pseudomonas fluorescens] Length = 1121 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 15/203 (7%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 + LA DP RS + A AGSGKT L R+L L P +L +T T AAAE+ R Sbjct: 29 EARALAIDPRRSLLLLAPAGSGKTSTLQMRLLSCLTVVERPEEVLAITFTNMAAAEIVER 88 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V+ + + + L E+ + + + + + + + +L P L++ T +FC Sbjct: 89 VIGALQQAATGIEPELVHELPQY---RLARLVLDRDKEMGWNLLLNPSRLRIMTFDSFCA 145 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS-- 199 ++ + P+ + + + + + +A TL S+ N+ ++ +A LE Sbjct: 146 SLASKTPIMSGLGGG---KTTDDASLIYRQAILETLKSV---NDNDIPEALSNALEAGMS 199 Query: 200 -NDEDIETLI---SDIISNRTAL 218 E L+ +++ R Sbjct: 200 FAKNRFEALVPLFENLLMKRDQW 222 >gi|332171921|gb|AEE21175.1| DNA helicase II [Glaciecola agarilytica 4H-3-7+YE-5] Length = 724 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 77/220 (35%), Gaps = 45/220 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ++ ++ + + + P + A AGSGKT +LV R+ L+ + P +L Sbjct: 2 DVSRLLEQLNDKQRDAVA--SPAADMLILAGAGSGKTRVLVHRIAWLMEVEGIAPWGILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ E+ + Sbjct: 60 VTFTNKAAREMRGRIEELQGS--------------------------------------A 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + + T H +++ EA + +F I D + +L + + S+ LD + Sbjct: 82 LSNMWIGTFHGIAHRLLRTHYAEAKLPENFQILDSDDQYRL----VRRVIKSMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 K + + DE + D + KL + Y Sbjct: 138 APKHVQWYINGNKDEGLRPEHIDTHGDYNQKKLCEIYQVY 177 >gi|116053593|ref|YP_793920.1| DNA-dependent helicase II [Pseudomonas aeruginosa UCBPP-PA14] gi|115588814|gb|ABJ14829.1| DNA helicase II [Pseudomonas aeruginosa UCBPP-PA14] Length = 728 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 71/184 (38%), Gaps = 43/184 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81 ++ + P V A AGSGKT +LV R+ L+ + +A P ++L +T T AAAEM HR Sbjct: 16 QRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLIQVEHASPYSILSVTFTNKAAAEMRHR 75 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + +++ P G+ V T H Sbjct: 76 IEQLLGI--------------------------------------NPAGMWVGTFHGLAH 97 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 +++ EA ++ +F I D + ++L K + + LD + + D Sbjct: 98 RLLRAHWREAGLSENFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWFINGQKD 153 Query: 202 EDIE 205 E + Sbjct: 154 EGLR 157 >gi|304317472|ref|YP_003852617.1| UvrD/REP helicase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778974|gb|ADL69533.1| UvrD/REP helicase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 1088 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 25/180 (13%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTKAAA 75 EQL A D +++ + A AGSGKT +L +R ++LL ++ +T T+ AA Sbjct: 16 DDLSEEQLKALDISKNIALKAGAGSGKTRVLTKRYIKLLNDIPEIKIDNIVAITFTRKAA 75 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ + I + E + + + + T Sbjct: 76 SEMKDRIRKEIEVMCKVDSE----------------------KEKWMEFRNSLSFANIDT 113 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELKKAFYE 194 IH FCE I++ +A + F I DE +S + + + + D N++L K ++ Sbjct: 114 IHGFCEKIIRDNFADAGVDPLFTIIDEAESNTAVHNIVRWIVDEALNDPVNKDLLKIMFK 173 >gi|260577850|ref|ZP_05845783.1| ATP-dependent helicase PcrA [Corynebacterium jeikeium ATCC 43734] gi|258604009|gb|EEW17253.1| ATP-dependent helicase PcrA [Corynebacterium jeikeium ATCC 43734] Length = 950 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 85/235 (36%), Gaps = 75/235 (31%) Query: 16 LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 L+ +Q A + S + A AGSGKT +L +R+ LL P +L +T T A Sbjct: 132 LLEGLNPQQRQAVEHMGSPLLIVAGAGSGKTSVLTRRIAYLLANGVAPWQILAITFTNKA 191 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV++++ + + V Sbjct: 192 AAEMRERVVDMVGPQAE--------------------------------------RMWVS 213 Query: 135 TIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKL----IEEAKKST------------- 176 T H+FC +++ A + ++F+I D + SK+L I++A Sbjct: 214 TFHSFCVRVLRANAHLAPGLNTNFSIYDSDDSKRLMTMIIKDASLDLKEFSPRGVLNVIS 273 Query: 177 ------------LASIMLDNNEE------LKKAFYEILEISNDEDIETLISDIIS 213 L D+N L K + L +N D + LI ++++ Sbjct: 274 NWKNELVGPAGALEEAQRDSNPHTAQIATLYKTYQNRLRAANAVDFDDLIGEVVA 328 >gi|218134063|ref|ZP_03462867.1| hypothetical protein BACPEC_01953 [Bacteroides pectinophilus ATCC 43243] gi|217991438|gb|EEC57444.1| hypothetical protein BACPEC_01953 [Bacteroides pectinophilus ATCC 43243] Length = 163 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 74/165 (44%), Gaps = 25/165 (15%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 ++ VSA AGSGKT +LV+R++R++ + L+ +T T AAAA+M R+ Sbjct: 6 KNILVSAAAGSGKTAVLVERIIRMITDPDNHVDIERLVVVTFTNAAAAQMRERI------ 59 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 A + + + P+ ++ + ++ ++ TI +FC I++ Sbjct: 60 ---------GAALESMIEENPSDRNLQRQLAMIHMA-------QITTIDSFCLNILRNNY 103 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 + +I F IAD+ + + + + L NE+ + + Sbjct: 104 MNLDIDPGFRIADQGELELIKADVMGELLEKYYAGGNEDFLRTYQ 148 >gi|308051416|ref|YP_003914982.1| ATP-dependent DNA helicase UvrD [Ferrimonas balearica DSM 9799] gi|307633606|gb|ADN77908.1| ATP-dependent DNA helicase UvrD [Ferrimonas balearica DSM 9799] Length = 721 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 68/193 (35%), Gaps = 45/193 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +D ++ + + A+ + V A AGSGKT +L R+ LL P +L +T T Sbjct: 7 LDTLNDKQRAAVEAA--PGAVLVLAGAGSGKTRVLTHRIAWLLEEQGESPYAILAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM HR+ +++ + Sbjct: 65 KAAAEMRHRIEDLVHGPV--------------------------------------NRMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H +++ EA + F I D + ++L K L S+ LD + Sbjct: 87 IGTFHGLAHRLLRAHYQEAGLPEGFQILDSDDQQRL----VKRILKSLQLDEKRWSPRQA 142 Query: 193 YEILEISNDEDIE 205 + DE + Sbjct: 143 VGYINAKKDEGLR 155 >gi|149908513|ref|ZP_01897175.1| DNA helicase II [Moritella sp. PE36] gi|149808347|gb|EDM68284.1| DNA helicase II [Moritella sp. PE36] Length = 722 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 86/230 (37%), Gaps = 47/230 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + + + A P S + A AGSGKT +LV R+ L+ + P +LL Sbjct: 2 DVSLLLDGLNDKQRDAVAA--PQSSMLILAGAGSGKTRVLVHRLAWLMQVEQCSPYSLLA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV +++ Sbjct: 60 VTFTNKAAAEMRGRVDKLLEGRQQ------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ + T H +++ L+A + + F I D + +L+ K + ++ LD + Sbjct: 84 --GMWIGTFHGIAHRLLRAHHLDAGLPAEFQIIDSDDQLRLL----KRLIKAMNLDEKQW 137 Query: 188 LKKAFYEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 K + DE + R +K+ + R +++ Sbjct: 138 PAKQAMWYIGGKKDEGLRPEHLQAYDPIERNWIKIYQAYQESCDRAGLVD 187 >gi|269926936|ref|YP_003323559.1| UvrD/REP helicase [Thermobaculum terrenum ATCC BAA-798] gi|269790596|gb|ACZ42737.1| UvrD/REP helicase [Thermobaculum terrenum ATCC BAA-798] Length = 779 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 35/167 (20%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 +S ++ ++ + E + A P V A GSGKT +L R+ LL P +L +T Sbjct: 8 YSSILEGLNDKQLEAVTA--PDGPVLVLAGPGSGKTRVLTHRIAFLLSQGVSPFNILAVT 65 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ ++ + Sbjct: 66 FTNKAAREMRERIERLVGGAFGSYEAR--------------------------------- 92 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T H+ C ++++ I+ +F I D++ +LI++A Sbjct: 93 NITMGTFHSICSRVLRRDGGAIGISPNFVIYDDDDQIRLIKQALNEI 139 >gi|229593437|ref|YP_002875556.1| DNA-dependent helicase II [Pseudomonas fluorescens SBW25] gi|229365303|emb|CAY53652.1| DNA helicase II [Pseudomonas fluorescens SBW25] Length = 727 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 +++ + P V A AGSGKT +LV R+ L+ + NA P ++L +T T AAAEM H Sbjct: 15 AQRQAVAAPVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRH 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ +P G+ V T H Sbjct: 75 RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA ++ F I D + ++L K + + LD + + Sbjct: 97 HRLLRAHWQEAGLSQTFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWFINGQK 152 Query: 201 DEDIE 205 DE + Sbjct: 153 DEGLR 157 >gi|220933272|ref|YP_002512171.1| DNA helicase II [Thioalkalivibrio sp. HL-EbGR7] gi|219994582|gb|ACL71184.1| DNA helicase II [Thioalkalivibrio sp. HL-EbGR7] Length = 721 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 69/194 (35%), Gaps = 45/194 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 +D ++ + E + A DP V A AGSGKT +L R+ L+ + P ++L +T T Sbjct: 6 LLDSLNPAQREAVSA-DPG-PVLVLAGAGSGKTRVLTHRIAWLIQVEGLSPHSILAVTFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM R+ ++ G+ Sbjct: 64 NKAAAEMRGRIEALLGMPVR--------------------------------------GM 85 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H +++ +A + F I D + ++ K L ++ LD + Sbjct: 86 WVGTFHGLAHRLLRAHWQDAGLPQGFQILDSDDQLRM----VKRVLKALELDEARWPPRQ 141 Query: 192 FYEILEISNDEDIE 205 + DE + Sbjct: 142 AQWFINARKDEGVR 155 >gi|119475194|ref|ZP_01615547.1| DNA helicase II [marine gamma proteobacterium HTCC2143] gi|119451397|gb|EAW32630.1| DNA helicase II [marine gamma proteobacterium HTCC2143] Length = 725 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 90/232 (38%), Gaps = 43/232 (18%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ++ ++ + + + AS + V A AGSGKT +LV R+ L+ P ++L Sbjct: 2 DVSYILNDLNDAQRQAVAAS--ATNLLVLAGAGSGKTRVLVHRIAWLIQAEGLSPFSILS 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ E++ + + L Sbjct: 60 VTFTNKAAKEMRARIDELLGSSASG--------------------------------LGA 87 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 P G+ V T H +++ +A + +F I D + +L++ + LD + Sbjct: 88 PRGMWVGTFHGIAHRLLKAHWKQAGLPQNFQILDSDDQLRLVKRIHREF----DLDESRW 143 Query: 188 LKKAFYEILEISNDEDIETL-ISDI---ISNRTALKLIFFFFSYLWRRKIIE 235 + + DE I D +++ T L++ + R+ +++ Sbjct: 144 PPRQSQWFINGQKDEGKRAAHIEDYGKDLNHSTMLRVYLAYEQACDRQGVVD 195 >gi|91776104|ref|YP_545860.1| DNA helicase/exodeoxyribonuclease V, subunit A [Methylobacillus flagellatus KT] gi|91710091|gb|ABE50019.1| DNA helicase/exodeoxyribonuclease V, subunit A [Methylobacillus flagellatus KT] Length = 1129 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 57/232 (24%), Positives = 105/232 (45%), Gaps = 12/232 (5%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 ++ DL+ + + A + S V A AG+GKT +L QR LRLL + P ++ +T Sbjct: 4 AQATDLLKLDRVSRERALE-LASFIVEAPAGAGKTELLTQRFLRLLTTVSAPEQIIAITF 62 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM R+L+ + + S + K Q + K + A L +L+ P Sbjct: 63 TNKAAAEMRARILDSLLMAASGSPPPQAH---KQQTFRLGKEALRHADSLGWELLDHPSR 119 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 L++ TI + + +Q PL + S A+ E + A + TLA + ++ E + Sbjct: 120 LRIFTIDSLSGHLSRQMPLLSRFGSQPAV--SEDASAHYRLAAERTLALVDEESMGEAVR 177 Query: 191 AFYEILEISND-EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 ++ ND + + L+ D++ R ++ ++ E++L + Sbjct: 178 LALRYVD--NDVQKLTGLLVDMLGKRDQWLDYA---NHGNLQQAAERALEHL 224 >gi|149178399|ref|ZP_01856989.1| UvrD/REP helicase [Planctomyces maris DSM 8797] gi|148842716|gb|EDL57089.1| UvrD/REP helicase [Planctomyces maris DSM 8797] Length = 1171 Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 27/224 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAA 76 T + + S +SA AG GKT +L QR L+L+ A P ++ +T T+ AA Sbjct: 8 TDQQAAAINTRDVSIALSAGAGCGKTFVLTQRFLKLIEPGAPPDRLSHIVAITFTERAAR 67 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ E + +++ P + + +A ++ ++ TI Sbjct: 68 EMRDRIRETC--------------LDQLKNCPPEEVNHWQA------VIRGLDSARISTI 107 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC +I++ + A + HF + ++ S + + + ++ N + + Y Sbjct: 108 HSFCTSILRSHAVSARLDPHFGLLEQGTSDTFLRKVVHEAVHELLKQENADCIQMVYRF- 166 Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWS 240 E L+ ++ + L+ F + + W Sbjct: 167 ---GLEKTYELLISLVPQQFRLEFDEFRELTPEQLAGRMRDFWE 207 >gi|254428788|ref|ZP_05042495.1| UvrD/REP helicase domain protein [Alcanivorax sp. DG881] gi|196194957|gb|EDX89916.1| UvrD/REP helicase domain protein [Alcanivorax sp. DG881] Length = 757 Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 87/237 (36%), Gaps = 47/237 (19%) Query: 1 MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LAN 59 ++ + + + ID ++ + + + A D R V A AGSGKT +LV R+ + Sbjct: 32 LLNFRAMDDVTSLIDGLNPAQRDAVAADD--RHLLVLAGAGSGKTRVLVHRIAWQIATEQ 89 Query: 60 AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119 A P +L +T T AAAEM R+ +++ Sbjct: 90 ASPFGILAVTFTNKAAAEMRGRIEQLLDM------------------------------- 118 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 + G+ V T H +++ EA + F I D + +LI+ K Sbjct: 119 -------SADGMWVGTFHGIAHRLLRAHWQEAGLPQGFQIIDADDQIRLIKRVSK----E 167 Query: 180 IMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTAL--KLIFFFFSYLWRRKII 234 + LD + + DE + D+ + AL + I+F + R + Sbjct: 168 LGLDEQRWPARQATWFINGQKDEGLRARHMDVGGDLFALTMQKIYFAYEDACERGGL 224 >gi|254497559|ref|ZP_05110348.1| DNA-dependent helicase II [Legionella drancourtii LLAP12] gi|254353217|gb|EET11963.1| DNA-dependent helicase II [Legionella drancourtii LLAP12] Length = 725 Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 76/196 (38%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 + + +++ + E + A P + V A AGSGKT +LV R+ L+ + P +L +T Sbjct: 4 AALLKGLNERQREAVTA--PLGNTLVLAGAGSGKTKVLVSRIAWLIEEEHISPHGILAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ ++ Sbjct: 62 FTNKAAGEMRARLNSLLATPVL-------------------------------------- 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 GL V T H C ++++ EAN+ F I D E ++I K +A++ LD+ + Sbjct: 84 GLWVGTFHGLCHRLLRRHYKEANLPEQFHILDSEDQARVI----KRVIAALNLDSEQWPV 139 Query: 190 KAFYEILEISNDEDIE 205 K + DE + Sbjct: 140 KQAQSFINGRKDEGVR 155 >gi|229822911|ref|ZP_04448981.1| hypothetical protein GCWU000282_00203 [Catonella morbi ATCC 51271] gi|229787724|gb|EEP23838.1| hypothetical protein GCWU000282_00203 [Catonella morbi ATCC 51271] Length = 1311 Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 32/222 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAE 77 S+ + VSA+AGSGKT +L++R+L LL A+ LL T T+AAA+E Sbjct: 15 FNDSQWEAIHQRGSNILVSASAGSGKTTVLIERILNHLLTHYANMDQLLVSTFTEAAASE 74 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ + + +D ++ HL+ + P ++T+H Sbjct: 75 MKARMENRLKQAVN------------------QTADRAEQAHLVSQLQLLPAS-HIRTLH 115 Query: 138 AFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNN--EELKKAFYE 194 +FC ++QQ+ + F + DE Q L +E + + + D + E+L + Sbjct: 116 SFCLQVIQQYFYIIDFDPSFRLLTDETQKSLLYQEVWQELMIDLAQDPDWQEKLFHLLAQ 175 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +D+ + LI D L F S+ + + + Sbjct: 176 FSPGPSDQGLYQLILD---------LYQFASSHPEPQVWLSQ 208 >gi|134103111|ref|YP_001108772.1| putative ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338] gi|291003946|ref|ZP_06561919.1| putative ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338] gi|133915734|emb|CAM05847.1| putative ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338] Length = 873 Score = 141 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 70/172 (40%), Gaps = 39/172 (22%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPST 64 S + + DL++ +Q A + + S V A AGSGKT +L R+ LL HP Sbjct: 20 SQRRGPDPQDLLAGLNPQQRDAVEHSGSPLLVVAGAGSGKTRVLTNRIAYLLARGVHPGQ 79 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 ++ +T T AAAEM RV +++ + Sbjct: 80 IMAITFTNKAAAEMKERVADLVGRRA---------------------------------- 105 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C ++++ ++S+F+I D + S++LI + Sbjct: 106 ----NAMWVSTFHSMCVRVLRREAKTLGMSSNFSIYDADDSRRLITIIAREL 153 >gi|121605093|ref|YP_982422.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2] gi|120594062|gb|ABM37501.1| DNA helicase/exodeoxyribonuclease V, subunit A [Polaromonas naphthalenivorans CJ2] Length = 1103 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 27/219 (12%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--------------PSTLLCLTH 70 +A DP RS + A AG+GKT +LV R++R LL A+ P +L +T Sbjct: 19 AIACDPRRSVAIEACAGAGKTWMLVSRIVRALLDGANAPDPASGTPREPVRPHEILAITF 78 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEI----TKIQGKKPNKSDMSKAR-HLLITIL 125 TK AA EM R+ E + ++H DE L E+ Q + +DM + +L ++L Sbjct: 79 TKKAAGEMRERLDEWLQKFTHADDETLRQELIMRGVSSQKSLQSNADMRRQLSNLYRSML 138 Query: 126 ETPGGLKVQTIHAFCEAIMQQFP----LEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 + ++++T H++ A+++ P + ++ + +++ + + + A++ Sbjct: 139 ASGRAVQIRTFHSWFAALLRSAPVAVLHRLGMPVNYQLLEDDAPARAL--VWRRFYAALA 196 Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKL 220 D LK F ++ + + + RT L Sbjct: 197 KD--ALLKADFEALVLGHGRHQADKALQSALDKRTEFVL 233 >gi|77164123|ref|YP_342648.1| DNA-dependent helicase II [Nitrosococcus oceani ATCC 19707] gi|254435365|ref|ZP_05048872.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27] gi|76882437|gb|ABA57118.1| ATP-dependent DNA helicase UvrD [Nitrosococcus oceani ATCC 19707] gi|207088476|gb|EDZ65748.1| UvrD/REP helicase domain protein [Nitrosococcus oceani AFC27] Length = 717 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 86/231 (37%), Gaps = 48/231 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67 + S ++ +++ + E A P V A AGSGKT +LV R+ L+ P LL Sbjct: 2 DISSLLNPLNKAQREAAAA--PPGHHLVLAGAGSGKTRVLVHRMAWLIRSQGIAPVNLLA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ E++ Sbjct: 60 VTFTNKAAGEMRGRIEELLETPV------------------------------------- 82 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++ EA + F I D E +LI + L ++ LD + Sbjct: 83 -GGMWVGTFHGIAHRLLRAHWQEAQLPQDFQILDSEDQYRLI----RRILQNLNLDESRW 137 Query: 188 LKKAFYEILEISNDEDIE-TLISDIISN--RTALKLIFFFFSYLWRRKIIE 235 + + D+ + + + + R +++ + S+ R +++ Sbjct: 138 PPRQAQWFINSHKDKGLRPQHLEEGTNPHVRQQIRIYHDYQSHCERSGLVD 188 >gi|312963948|ref|ZP_07778419.1| DNA helicase II / ATP-dependent DNA helicase [Pseudomonas fluorescens WH6] gi|311281983|gb|EFQ60593.1| DNA helicase II / ATP-dependent DNA helicase [Pseudomonas fluorescens WH6] Length = 727 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 42/185 (22%), Positives = 71/185 (38%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 +++ + P V A AGSGKT +LV R+ L+ + NA P ++L +T T AAAEM H Sbjct: 15 AQRQAVAAPVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRH 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ +P G+ V T H Sbjct: 75 RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + F I D + ++L K + + LD + + Sbjct: 97 HRLLRAHWQEAGLAQTFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWFINGQK 152 Query: 201 DEDIE 205 DE + Sbjct: 153 DEGLR 157 >gi|309751169|gb|ADO81153.1| DNA helicase II [Haemophilus influenzae R2866] Length = 727 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ Sbjct: 3 DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + + Sbjct: 61 VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 86 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G+ + T H+ +++ L+ + F I D E Sbjct: 87 LFGMWIGTFHSIAHRLLRAHHLDIGLPQDFQILDSEDQ 124 >gi|330993524|ref|ZP_08317459.1| putative DNA helicase II-like protein [Gluconacetobacter sp. SXCC-1] gi|329759554|gb|EGG76063.1| putative DNA helicase II-like protein [Gluconacetobacter sp. SXCC-1] Length = 737 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 44/192 (22%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D +++ EQ A + T V A AG+GKT +L R +LL+ A P+ +L +T T Sbjct: 12 DYLNRLNPEQRDAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLSGRARPNQILAVTFTN 71 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + GL Sbjct: 72 KAAREMRERVSALLGEPAE--------------------------------------GLW 93 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T HA C ++++ +TS F I D + +L+++ L +D +A Sbjct: 94 LGTFHALCARMLRRHAEHVGLTSSFTILDTDDQLRLLKQ----VLEPYRIDTKRWPPQAI 149 Query: 193 YEILEISNDEDI 204 +++ D + Sbjct: 150 MGVIQRWKDRGL 161 >gi|145627832|ref|ZP_01783633.1| DNA helicase II [Haemophilus influenzae 22.1-21] gi|145639293|ref|ZP_01794899.1| DNA helicase II [Haemophilus influenzae PittII] gi|144979607|gb|EDJ89266.1| DNA helicase II [Haemophilus influenzae 22.1-21] gi|145271596|gb|EDK11507.1| DNA helicase II [Haemophilus influenzae PittII] Length = 726 Score = 141 bits (356), Expect = 7e-32, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ Sbjct: 2 DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + + Sbjct: 60 VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G+ + T H+ +++ L+ + F I D E Sbjct: 86 LFGMWIGTFHSIAHRLLRAHHLDIGLPQDFQILDSEDQ 123 >gi|254448468|ref|ZP_05061928.1| DNA-dependent ATPase I and helicase II [gamma proteobacterium HTCC5015] gi|198261851|gb|EDY86136.1| DNA-dependent ATPase I and helicase II [gamma proteobacterium HTCC5015] Length = 725 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 45/196 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + P L+ Sbjct: 2 DVSYLLDGLNDAQREAVCA--PPANLLVLAGAGSGKTRVLVHRMAWLIEVEKVSPYGLMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM R ++ + Sbjct: 60 VTFTNKAAAEMRQRCEALLGMPT------------------------------------- 82 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H +++Q EA + F I D + +L++ +S + LD + Sbjct: 83 -GGMWVGTFHGISHRLLRQHWQEAGLPEGFQILDSQDQLRLVKRVVRS----LELDESRW 137 Query: 188 LKKAFYEILEISNDED 203 K + DE Sbjct: 138 PPKQAMWFINARKDEG 153 >gi|89889935|ref|ZP_01201446.1| putative ATP-dependent helicase, UvrD/REP helicase family [Flavobacteria bacterium BBFL7] gi|89518208|gb|EAS20864.1| putative ATP-dependent helicase, UvrD/REP helicase family [Flavobacteria bacterium BBFL7] Length = 1057 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 13/198 (6%) Query: 35 WVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 + SA+AGSGKT+ L + L LL N H +L +T T A AEM RVLE + + Sbjct: 8 FYSASAGSGKTYTLARDYLALLFQSQFNNHYRKILAVTFTNKAVAEMKERVLEHLYNFGK 67 Query: 92 LSDEILSAEI---TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 S I K + +KA + +L + TI AF I++ F Sbjct: 68 QPVPNESLGIFNHIKKLTGLSEQQLSTKAIKIHQRLLHDYSAFDIVTIDAFNHRILRTFA 127 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL- 207 + ++ + F + E + LI +A ++ LA D K + + +I N++ + Sbjct: 128 KDIDLPAGFEV--ELDTDSLINKAIQNLLARAGRDKELTKKLVSFSLSKIDNNKSWDVAY 185 Query: 208 ----ISDIISNRTALKLI 221 IS +I N K + Sbjct: 186 DLMQISALIKNENHFKYL 203 >gi|83590844|ref|YP_430853.1| ATP-dependent DNA helicase PcrA [Moorella thermoacetica ATCC 39073] gi|83573758|gb|ABC20310.1| ATP-dependent DNA helicase PcrA [Moorella thermoacetica ATCC 39073] Length = 729 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 72/208 (34%), Gaps = 45/208 (21%) Query: 13 TIDLISQTK-SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 D ++ +Q V A AGSGKT +L RV L+ P +L +T T Sbjct: 4 LADFMALLNGPQQEAVKHRGTPLLVLAGAGSGKTRVLTYRVAALIQEGVRPENILAVTFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ + GL Sbjct: 64 NKAAQEMKERLEGLVGEAAR--------------------------------------GL 85 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H+ C I+++ +F I D + + A K L + LD+ + ++ Sbjct: 86 WVSTFHSACVRILRREAHLLGYRPNFVIYDTDDQ----QAALKEVLKELDLDDKKYPPRS 141 Query: 192 FYEILEISND--EDIETLISDIISNRTA 217 +++ ++ + + E + + R Sbjct: 142 LAQVISMAKNDLKTPERFLDGAATFREQ 169 >gi|258512041|ref|YP_003185475.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478767|gb|ACV59086.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1240 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 24/185 (12%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP----STLLCLTHTK 72 ++ +K ++ + VSA AGSGKT +L +R+ L A P LL +T T+ Sbjct: 3 VNWSKEQERAIRARGTNLVVSAGAGSGKTAVLAERIASL--AEGDPKFRMDQLLVMTFTE 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA EM R++ + + +++ + KAR + + Sbjct: 61 AAAEEMRARIVRRLAERAAEAEQAGES---------------VKARR-FSRLAHRANDAQ 104 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM--LDNNEELKK 190 + TIH+FC ++++ +EA + F + E+ L+ A ++TL L+ +L Sbjct: 105 ISTIHSFCLSLLRDHAVEAGLVPGFRVLSGEEDAVLLRGAAQATLDEWARHLERGPQLCT 164 Query: 191 AFYEI 195 A + Sbjct: 165 ALAAL 169 >gi|323702799|ref|ZP_08114458.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum nigrificans DSM 574] gi|323532187|gb|EGB22067.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum nigrificans DSM 574] Length = 721 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 39/164 (23%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D+++ Q A V A AGSGKT +L R+ ++L P +L +T T Sbjct: 1 MDVLANLNPAQAAAVQHTEGPLLVLAGAGSGKTRVLTHRIAKILEQGVPPYNILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV ++ + L Sbjct: 61 KAAAEMKSRVENLVPQAAR--------------------------------------DLW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C ++++ S+F+I D+ + LI+E K Sbjct: 83 VMTFHSACLRMLRREIQALGYNSNFSIYDDADQQTLIKECLKEL 126 >gi|70733445|ref|YP_263220.1| DNA-dependent helicase II [Pseudomonas fluorescens Pf-5] gi|68347744|gb|AAY95350.1| DNA helicase II [Pseudomonas fluorescens Pf-5] Length = 727 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 71/185 (38%), Gaps = 44/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 Q +A+ R V A AGSGKT +LV R+ L+ + NA P ++L +T T AAAEM H Sbjct: 16 QRQAVAASVGRQ-LVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRH 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ P G+ V T H Sbjct: 75 RIEQLLGI--------------------------------------NPAGMWVGTFHGLA 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA ++ F I D + ++L K + + LD + + Sbjct: 97 HRLLRAHWQEAGLSQTFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWFINGQK 152 Query: 201 DEDIE 205 DE + Sbjct: 153 DEGLR 157 >gi|146309527|ref|YP_001189992.1| DNA-dependent helicase II [Pseudomonas mendocina ymp] gi|145577728|gb|ABP87260.1| ATP-dependent DNA helicase UvrD [Pseudomonas mendocina ymp] Length = 727 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 49/199 (24%), Positives = 75/199 (37%), Gaps = 44/199 (22%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66 Q E + L S ++ + P V A AGSGKT +LV R+ L+ A A P ++L Sbjct: 2 QNDPELL-LASLNDAQVQAVAAPLGRQLVLAGAGSGKTRVLVHRIAFLIQAMGASPHSIL 60 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AAAEM HR+ +++ Sbjct: 61 SVTFTNKAAAEMRHRIEQMLG--------------------------------------H 82 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 P G+ V T H +++ EA +T +F I D + ++LI K + + LD Sbjct: 83 NPAGMWVGTFHGLAHRLLRAHWQEAALTENFQILDSDDQQRLI----KRVIRELGLDEQR 138 Query: 187 ELKKAFYEILEISNDEDIE 205 K + DE Sbjct: 139 WPAKQAQWFINGQKDEGFR 157 >gi|300930020|ref|ZP_07145453.1| DNA helicase II [Escherichia coli MS 187-1] gi|300462110|gb|EFK25603.1| DNA helicase II [Escherichia coli MS 187-1] Length = 700 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 43/177 (24%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + V A AGSGKT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 1 PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 60 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + GG+ V T H +++ Sbjct: 61 --------------------------------------SQGGMWVGTFHGLAHRLLRAHH 82 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 ++AN+ F I D E +L+ K + ++ LD + + + DE + Sbjct: 83 MDANLPQDFQILDSEDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLR 135 >gi|145637060|ref|ZP_01792723.1| DNA helicase II [Haemophilus influenzae PittHH] gi|145269714|gb|EDK09654.1| DNA helicase II [Haemophilus influenzae PittHH] Length = 726 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ Sbjct: 2 DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + + Sbjct: 60 VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G+ + T H+ +++ L+ + F I D E Sbjct: 86 LFGMWIGTFHSIAHRLLRAHHLDIGLPQDFQILDSEDQ 123 >gi|307250580|ref|ZP_07532522.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857396|gb|EFM89510.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 699 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 37/157 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E ++A P + V A AGSGKT +L R+ L+ + N S +L Sbjct: 2 DFSLLLDGLNDKQREAVVA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ SH Sbjct: 60 VTFTNKAAAEMRHRIEHTLSSSSH----------------------------------HR 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164 G+ V T H+ +++ L+A++ F I D E Sbjct: 86 LFGMWVGTFHSIANRLLRSHYLDADLPQDFQIMDSED 122 >gi|165976747|ref|YP_001652340.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876848|gb|ABY69896.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 732 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 37/157 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E ++A P + V A AGSGKT +L R+ L+ + N S +L Sbjct: 2 DFSLLLDGLNDKQREAVVA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ SH Sbjct: 60 VTFTNKAAAEMRHRIEHTLSSSSH----------------------------------HR 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164 G+ V T H+ +++ L+A++ F I D E Sbjct: 86 LFGMWVGTFHSIANRLLRSHYLDADLPQDFQIMDSED 122 >gi|330812675|ref|YP_004357137.1| putative DNA helicase II [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380783|gb|AEA72133.1| putative DNA helicase II [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 727 Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 71/185 (38%), Gaps = 44/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 Q +A+ R V A AGSGKT +LV R+ L+ + NA P ++L +T T AAAEM H Sbjct: 16 QRQAVAASVGRQ-LVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAEMRH 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ P G+ V T H Sbjct: 75 RIEQLMGI--------------------------------------NPAGMWVGTFHGLA 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA ++ F I D + ++L K + + LD + + Sbjct: 97 HRLLRAHWQEAGLSQTFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWFINGQK 152 Query: 201 DEDIE 205 DE + Sbjct: 153 DEGLR 157 >gi|261840231|gb|ACX99996.1| ATP-dependent nuclease [Helicobacter pylori 52] Length = 949 Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 15/188 (7%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSK--------ARHLLITILETPGGLKVQTIHAFCEA 142 + E + K + A+ + L +++ TI AF ++ Sbjct: 65 KENLENEKEKEKSQNILKELEEKYRLDPSFVQNSAQKIYQRFLN--AEIRISTIDAFFQS 122 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS--- 199 I+++F ++++F + E +K ++ +S L+++ EEL + L Sbjct: 123 ILRKFCWFVGLSANFEV--NEDTKAHQQQLNESFLSALNNKQLEELSVFIAQCLSYDSYT 180 Query: 200 NDEDIETL 207 +D +E L Sbjct: 181 SDSVLERL 188 >gi|254497523|ref|ZP_05110315.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella drancourtii LLAP12] gi|254353240|gb|EET11983.1| ATP-dependent DNA helicase (UvrD/Rep helicase) [Legionella drancourtii LLAP12] Length = 1084 Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 6/216 (2%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 ++ A+DPT+S V A AGSGKT IL QR LRLL P ++ LT T+ AA+EM R+ Sbjct: 7 QRNQATDPTQSFIVQAPAGSGKTEILTQRYLRLLGRVTAPEQIIALTFTRKAASEMRERI 66 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + + ++ + + + + + + +L P LK+ TI A C++ Sbjct: 67 IMALQQAAN---NVHAKSPHQQMTLDFAREALHRDAQYHWDLLHQPNRLKIVTIDALCQS 123 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 I Q PL ++ I D+ +S L ++ ++ ++ K ++ D Sbjct: 124 INQAIPLLEKQIAYSQITDKAESHYL-NSGRRCIQFAVDTPEYQQAIKTLLLHVDNRQDR 182 Query: 203 DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 ++ L +++ R L F + + E +L Sbjct: 183 LLD-LFKTLLAQRDQW-LAPLFQARAQEKSTFEHAL 216 >gi|153209587|ref|ZP_01947447.1| UvrD/REP helicase family protein [Coxiella burnetii 'MSU Goat Q177'] gi|212218647|ref|YP_002305434.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuK_Q154] gi|120575306|gb|EAX31930.1| UvrD/REP helicase family protein [Coxiella burnetii 'MSU Goat Q177'] gi|212012909|gb|ACJ20289.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuK_Q154] Length = 1110 Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 56/222 (25%), Positives = 96/222 (43%), Gaps = 13/222 (5%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 + A DP +S V A AGSGKT +L+QR L+LL P ++ +T T+ AAAEM R++ Sbjct: 7 RQQALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRERII 66 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + +E K + + + +H + P L++ TI A I Sbjct: 67 AALNEAQTQPA---PSESHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQI 123 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-- 201 Q P+ + + + E+ + EA S EE E+L ++ Sbjct: 124 CSQMPILCGFGAPPSTLEPEEIVEFYREAVIRLFES------EEHADTIEELLLHLDNKA 177 Query: 202 EDIETLISDIISNRTALK--LIFFFFSYLWRRKIIEKSLWSI 241 E +ETL+ ++ R +I + + + +EK+L +I Sbjct: 178 ESLETLLIKMLIRREQWLPHIINHYRNPNAIKNELEKALTTI 219 >gi|148828339|ref|YP_001293092.1| DNA-dependent helicase II [Haemophilus influenzae PittGG] gi|148719581|gb|ABR00709.1| DNA helicase II [Haemophilus influenzae PittGG] Length = 726 Score = 141 bits (355), Expect = 9e-32, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ Sbjct: 2 DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + + Sbjct: 60 VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G+ + T H+ +++ L+ + F I D E Sbjct: 86 LVGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 123 >gi|322515360|ref|ZP_08068354.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Actinobacillus ureae ATCC 25976] gi|322118587|gb|EFX90815.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Actinobacillus ureae ATCC 25976] Length = 732 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 37/157 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +L R+ L+ + N S +L Sbjct: 2 DFSLLLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ SH Sbjct: 60 VTFTNKAAAEMRHRIEHTLSSSSH----------------------------------HR 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164 G+ V T H+ +++ L+AN+ F I D E Sbjct: 86 LFGMWVGTFHSIANRLLRSHYLDANLPQDFQIMDSED 122 >gi|190150646|ref|YP_001969171.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263993|ref|ZP_07545594.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915777|gb|ACE62029.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870682|gb|EFN02425.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 732 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 37/157 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +L R+ L+ + N S +L Sbjct: 2 DFSLLLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ SH Sbjct: 60 VTFTNKAAAEMRHRIEHTLSSSSH----------------------------------HR 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164 G+ V T H+ +++ L+AN+ F I D E Sbjct: 86 LFGMWVGTFHSIANRLLRSHYLDANLPQDFQIMDSED 122 >gi|16273110|ref|NP_439344.1| DNA-dependent helicase II [Haemophilus influenzae Rd KW20] gi|1174922|sp|Q02322|UVRD_HAEIN RecName: Full=DNA helicase II gi|1574115|gb|AAC22841.1| DNA helicase II (uvrD) [Haemophilus influenzae Rd KW20] Length = 727 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 62/158 (39%), Gaps = 37/158 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + E++ A P + V A AGSGKT +L R+ L+ + N +++ Sbjct: 3 DISELLDGLNDKQRERVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + + Sbjct: 61 VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 86 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G+ + T H+ +++ L+ + F I D E Sbjct: 87 LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 124 >gi|308064321|gb|ADO06208.1| putative recombination protein RecB [Helicobacter pylori Sat464] Length = 949 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 21/191 (10%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKI-- 62 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSK-----------ARHLLITILETPGGLKVQTIHAF 139 L E L +E K + + K K A+ + L +++ TI AF Sbjct: 63 -LQKENLESEKEKEKSQNILKELEEKYRLNPSFVQNSAQKIYQRFLN--AEIRISTIDAF 119 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL--- 196 ++I+++F ++++F + E +K ++ S L+++ EEL + L Sbjct: 120 FQSILRKFCWFVGLSANFEV--NEDTKAHQQQLNASFLSALNNKQLEELSVFITQCLSHD 177 Query: 197 EISNDEDIETL 207 ++D +E L Sbjct: 178 SYTSDSILERL 188 >gi|301169926|emb|CBW29530.1| DNA-dependent ATPase I and helicase II [Haemophilus influenzae 10810] Length = 727 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ Sbjct: 3 DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + + Sbjct: 61 VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 86 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G+ + T H+ +++ L+ + F I D E Sbjct: 87 LVGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 124 >gi|165924171|ref|ZP_02220003.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 334] gi|165916386|gb|EDR34990.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 334] Length = 1110 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 56/222 (25%), Positives = 96/222 (43%), Gaps = 13/222 (5%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 + A DP +S V A AGSGKT +L+QR L+LL P ++ +T T+ AAAEM R++ Sbjct: 7 RQQALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRERII 66 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + +E K + + + +H + P L++ TI A I Sbjct: 67 AALNEAQTQPA---PSESHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQI 123 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-- 201 Q P+ + + + E+ + EA S EE E+L ++ Sbjct: 124 CSQMPILCGFGAPPSTLEPEEIVEFYREAVIRLFES------EEHADTIEELLLHLDNKA 177 Query: 202 EDIETLISDIISNRTALK--LIFFFFSYLWRRKIIEKSLWSI 241 E +ETL+ ++ R +I + + + +EK+L +I Sbjct: 178 ESLETLLIKMLIRREQWLPHIINHYRNPNAIKNELEKALTTI 219 >gi|307246245|ref|ZP_07528326.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255229|ref|ZP_07537044.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259663|ref|ZP_07541387.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852854|gb|EFM85078.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861778|gb|EFM93757.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866308|gb|EFM98172.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 732 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 37/157 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E ++A P + V A AGSGKT +L R+ L+ + N S +L Sbjct: 2 DFSLLLDGLNDKQREAVVA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ SH Sbjct: 60 VTFTNKAAAEMRHRIEHTLSSSSH----------------------------------HR 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164 G+ V T H+ +++ L+AN+ F I D E Sbjct: 86 LFGMWVGTFHSIANRLLRSHYLDANLPQDFQIMDSED 122 >gi|293374973|ref|ZP_06621268.1| ATP-dependent nuclease subunit A [Turicibacter sanguinis PC909] gi|292646383|gb|EFF64398.1| ATP-dependent nuclease subunit A [Turicibacter sanguinis PC909] Length = 1198 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 24/225 (10%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAA 76 + + +SA AGSGKT +LV+R++ +++ + LL +T T+AAAA Sbjct: 12 TWNDEQWEAIYRKGEDLLISAGAGSGKTAVLVERMIQKIIQEKLNIDELLVMTFTEAAAA 71 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ I K+P+ + L + T Sbjct: 72 EMKQRMRSRI---------------QDELEKQPDNEHLKVQ-------LNKISQSHISTF 109 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFC +++++ + F IAD+ + + +E +S + D +E + Sbjct: 110 HAFCNKLIKRYYYLLELDPVFKIADDIEVGIIQDEVVESLFDDLSDDEDESYLLLSRQFN 169 Query: 197 EISNDEDIETLISDIIS-NRTALKLIFFFFSYLWRRKIIEKSLWS 240 NDE+++ ++ I R+ ++I + + + E+ L S Sbjct: 170 NDRNDENLKVMLLKIYELARSNPEMIQWLENLPHLYQWDEQDLMS 214 >gi|319776569|ref|YP_004139057.1| DNA helicase II [Haemophilus influenzae F3047] gi|319897345|ref|YP_004135541.1| DNA helicase ii [Haemophilus influenzae F3031] gi|317432850|emb|CBY81215.1| DNA helicase II [Haemophilus influenzae F3031] gi|317451160|emb|CBY87393.1| DNA helicase II [Haemophilus influenzae F3047] Length = 727 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ Sbjct: 3 DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + + Sbjct: 61 VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 86 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G+ + T H+ +++ L+ + F I D E Sbjct: 87 LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 124 >gi|307261810|ref|ZP_07543476.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868628|gb|EFN00439.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 732 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 37/157 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +L R+ L+ + N S +L Sbjct: 2 DFSLLLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ SH Sbjct: 60 VTFTNKAAAEMRHRIEHTLSSSSH----------------------------------HR 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164 G+ V T H+ +++ L+AN+ F I D E Sbjct: 86 LFGMWVGTFHSIANRLLRSHYLDANLPQDFQIMDSED 122 >gi|260581112|ref|ZP_05848933.1| DNA helicase II [Haemophilus influenzae RdAW] gi|260092241|gb|EEW76183.1| DNA helicase II [Haemophilus influenzae RdAW] Length = 727 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ Sbjct: 3 DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + + Sbjct: 61 VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 86 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G+ + T H+ +++ L+ + F I D E Sbjct: 87 LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 124 >gi|309973348|gb|ADO96549.1| DNA helicase II [Haemophilus influenzae R2846] Length = 727 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ Sbjct: 3 DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + + Sbjct: 61 VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 86 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G+ + T H+ +++ L+ + F I D E Sbjct: 87 LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 124 >gi|32034174|ref|ZP_00134396.1| COG0210: Superfamily I DNA and RNA helicases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208790|ref|YP_001054015.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae L20] gi|126097582|gb|ABN74410.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 732 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 37/157 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +L R+ L+ + N S +L Sbjct: 2 DFSLLLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ SH Sbjct: 60 VTFTNKAAAEMRHRIEHTLSSSSH----------------------------------HR 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164 G+ V T H+ +++ L+A++ F I D E Sbjct: 86 LFGMWVGTFHSIANRLLRSHYLDADLPQDFQIMDSED 122 >gi|145635037|ref|ZP_01790743.1| DNA helicase II [Haemophilus influenzae PittAA] gi|145267645|gb|EDK07643.1| DNA helicase II [Haemophilus influenzae PittAA] Length = 726 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ Sbjct: 2 DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + + Sbjct: 60 VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G+ + T H+ +++ L+ + F I D E Sbjct: 86 LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 123 >gi|152978934|ref|YP_001344563.1| DNA-dependent helicase II [Actinobacillus succinogenes 130Z] gi|150840657|gb|ABR74628.1| DNA helicase II [Actinobacillus succinogenes 130Z] Length = 731 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 86/224 (38%), Gaps = 49/224 (21%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + E + A P + V A AGSGKT +L QR+ L+ + +++ Sbjct: 2 DISELLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTQRIAWLIAVEGISEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM R+ + +S ++ L Sbjct: 60 VTFTNKAAAEMRQRIESALARYS--------------------------SQRLF------ 87 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ V T H+ +++ +A + F I D E + + L N +E Sbjct: 88 --GMWVGTFHSIAHRLLRAHYADAGLPQDFQILDSEDQLR-------LVKRLLKLHNYDE 138 Query: 188 LKKAFYEILEISNDEDIETL----ISDIISNRTALKLIFFFFSY 227 + N++ E L I D+ ++R + I + Y Sbjct: 139 KMYPAKQACWYINNKKDEGLRPQQIDDM-NDRQEQEWIKIYRIY 181 >gi|325286154|ref|YP_004261944.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489] gi|324321608|gb|ADY29073.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489] Length = 1039 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 83/175 (47%), Gaps = 8/175 (4%) Query: 37 SANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 SA+AGSGKT+ L + L+++L++A +L +T T A EM R+L+ + A+S + Sbjct: 10 SASAGSGKTYTLAKEYLKIILSSATAKSYRQILAITFTNKAVNEMKQRILDNLYAFSKVD 69 Query: 94 DEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 +E +++ K+ N + +A+ + +IL + TI F +++ F + Sbjct: 70 EENKPSDLFLDVAKELNVSTEELQKRAKQVHKSILHNYAFFDISTIDKFTHRLIRTFAKD 129 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 I +F + + + L+ EA + LA D + +I +D+ + Sbjct: 130 LKIPQNFEVVLDIE--LLLSEAVERLLAKAGTDKLLTSTLLEFTFEKIDDDKSWD 182 >gi|329124082|ref|ZP_08252629.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Haemophilus aegyptius ATCC 11116] gi|327467507|gb|EGF13005.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Haemophilus aegyptius ATCC 11116] Length = 727 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ Sbjct: 3 DISELLDGLNDKQREAVAA--PLGNRLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + + Sbjct: 61 VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 86 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G+ + T H+ +++ L+ + F I D E Sbjct: 87 LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 124 >gi|307257392|ref|ZP_07539162.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864242|gb|EFM96155.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 732 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 37/157 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +L R+ L+ + N S +L Sbjct: 2 DFSLLLDGLNDKQREAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ SH Sbjct: 60 VTFTNKAAAEMRHRIEHTLSSSSH----------------------------------HR 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164 G+ V T H+ +++ L+AN+ F I D E Sbjct: 86 LFGMWVGTFHSIANRLLRSHYLDANLPQDFQIMDSED 122 >gi|303250592|ref|ZP_07336789.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252961|ref|ZP_07534849.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650580|gb|EFL80739.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859599|gb|EFM91624.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 732 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 37/157 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E ++A P + V A AGSGKT +L R+ L+ + N S +L Sbjct: 2 DFSLLLDGLNDKQREAVVA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ SH Sbjct: 60 VTFTNKAAAEMRHRIEHTLSSSSH----------------------------------HR 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164 G+ V T H+ +++ L+A++ F I D E Sbjct: 86 LFGMWVGTFHSIANRLLRSHYLDADLPQDFQIMDSED 122 >gi|145633082|ref|ZP_01788814.1| DNA helicase II [Haemophilus influenzae 3655] gi|144986308|gb|EDJ92887.1| DNA helicase II [Haemophilus influenzae 3655] Length = 726 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ Sbjct: 2 DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + + Sbjct: 60 VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G+ + T H+ +++ L+ + F I D E Sbjct: 86 LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 123 >gi|313896167|ref|ZP_07829720.1| ATP-dependent helicase/nuclease subunit A family protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312974966|gb|EFR40428.1| ATP-dependent helicase/nuclease subunit A family protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 270 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 19/224 (8%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAA 75 + T ++ ++ V+A AGSGKT +LV+R++ + + +L LT TKAAA Sbjct: 5 MRFTADQRRAIETRGQNILVAAAAGSGKTRVLVERIIAQVRSGELSLDRVLVLTFTKAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + L+AEI +I ++ SD + L G + T Sbjct: 65 AEMRERI-----------ETALNAEIDRIAEERAATSDADEEIAALERQRILLTGADIST 113 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-LDNNEELKKAFYE 194 H+FC+ I+Q + I ++ +A E++ L + + L + F Sbjct: 114 FHSFCQRILQTYIEATQIPPNYRLASEQEILLLTNDVFERLLEEKYSAAAAQGDADGFLA 173 Query: 195 ILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 + D+ + + + L L F S + Sbjct: 174 FADAYVGDKGGDERLQKAV-----LALYKFSLSQPSPETWLAAQ 212 >gi|296111905|ref|YP_003622287.1| ATP-dependent nuclease, subunit A [Leuconostoc kimchii IMSNU 11154] gi|295833437|gb|ADG41318.1| ATP-dependent nuclease, subunit A [Leuconostoc kimchii IMSNU 11154] Length = 1241 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 35/229 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 T ++Q + + V+A+AGSGKT +L++R+++ +LA L +T T AAA EM Sbjct: 5 FTINQQRAVQETGHNILVAASAGSGKTTVLIERLIQKILAGTSVENFLIVTFTHAAANEM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ I +DE L + L L + TI A Sbjct: 65 RERLEIAIEKRLQTADEHL--------------------KRFLQEQLLLLPAANISTIDA 104 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE---LKKAFYEI 195 + +++ + + F + + + ++ + L ++ D EE F + Sbjct: 105 YALRLIENYYHVIGLDPQFRLLSDTAERDMLRQ---DVLNNVFSDFYEETHVQHANFLAL 161 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYL----WRRKIIEKSLWS 240 + D + + +I+ LKL F + W + + E L Sbjct: 162 VTNFGDPTHDDQLQNIV-----LKLADFAEARPDGSAWLQSLREDDLTH 205 >gi|303253078|ref|ZP_07339228.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248354|ref|ZP_07530377.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648063|gb|EFL78269.1| DNA-dependent helicase II [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855092|gb|EFM87272.1| DNA helicase II [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 732 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 37/157 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E ++A P + V A AGSGKT +L R+ L+ + N S +L Sbjct: 2 DFSLLLDGLNDKQREAVVA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ SH Sbjct: 60 VTFTNKAAAEMRHRIEHTLSSSSH----------------------------------HR 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164 G+ V T H+ +++ L+A++ F I D E Sbjct: 86 LFGMWVGTFHSIANRLLRSHYLDADLPQDFQIMDSED 122 >gi|258620540|ref|ZP_05715577.1| DNA helicase II [Vibrio mimicus VM573] gi|258587055|gb|EEW11767.1| DNA helicase II [Vibrio mimicus VM573] Length = 534 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + + A AGSGKT +LV R+ L+ + A P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ T Sbjct: 63 FTNKAAAEMRGRIEELMHG--------------------------------------TAS 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + ++L+ K + + LD+ + Sbjct: 85 GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL----KRLIKAHNLDDKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 + + DE + Sbjct: 141 RQVAWWINNQKDEGLR 156 >gi|254491461|ref|ZP_05104640.1| UvrD/REP helicase domain protein [Methylophaga thiooxidans DMS010] gi|224462939|gb|EEF79209.1| UvrD/REP helicase domain protein [Methylophaga thiooxydans DMS010] Length = 723 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 45/220 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE ++ +++ + E + A P A + A AGSGKT +LV R+ L+ + P+ +L Sbjct: 2 DVSELLNDLNKPQREAVAA--PLGHARILAGAGSGKTRVLVHRIAWLIQAEDFSPANILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM R+ +I+ Sbjct: 60 VTFTNKAAAEMRGRIEDILGYP-------------------------------------- 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 PGG+ V T H +++ +A++ F I D + ++I+ + ++ LD + Sbjct: 82 PGGMWVGTFHGLAHRLLRSHWKDADLPQSFQILDSDDQLRMIKRIVR----AMELDEAQW 137 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 K + DE + ++ + K++ + +Y Sbjct: 138 PPKQAQWYINGQKDEGLRAKDIQAGNDPYSQKMLAIYQAY 177 >gi|52629180|gb|AAU27921.1| DNA dependent ATPase I and helicase II [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 730 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 43/187 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 + ++ + P + V A AGSGKT +LV R+ L+ + P +L +T T AA EM Sbjct: 20 NEKQRDAVTSPLGNMLVLAGAGSGKTKVLVSRIAWLIEEQHLSPHAILAVTFTNKAAGEM 79 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +++ + GL V T H Sbjct: 80 RSRLSSMLSTPTL--------------------------------------GLWVGTFHG 101 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++++ EAN+ F I D E ++I K + S+ LD + K + Sbjct: 102 LCHRLLRRHYKEANLPEQFHILDSEDQARVI----KRVILSLNLDPEQWQVKQAQAFINS 157 Query: 199 SNDEDIE 205 DE + Sbjct: 158 KKDEGLR 164 >gi|104784398|ref|YP_610896.1| DNA-dependent helicase II [Pseudomonas entomophila L48] gi|95113385|emb|CAK18113.1| DNA-dependent ATPase I and helicase II [Pseudomonas entomophila L48] Length = 727 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 44/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 Q +A+ R V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM H Sbjct: 17 QRQAVAAQVGRQ-LVLAGAGSGKTRVLVHRIAWLIQVVQASPHSILSVTFTNKAAAEMRH 75 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ P G+ V T H Sbjct: 76 RIEQLLGI--------------------------------------NPAGMWVGTFHGLA 97 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + +F I D + ++LI K + + LD + + + Sbjct: 98 HRLLRAHWQEAGLAQNFQILDSDDQQRLI----KRVIREMGLDEQKWPARQVQWFINGQK 153 Query: 201 DEDIE 205 DE + Sbjct: 154 DEGLR 158 >gi|209542394|ref|YP_002274623.1| UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5] gi|209530071|gb|ACI50008.1| UvrD/REP helicase [Gluconacetobacter diazotrophicus PAl 5] Length = 760 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 44/192 (22%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D + + EQ A + T V A AG+GKT +L R +LL+ A P +L +T T Sbjct: 35 DYLQRLNPEQRAAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLSGRARPYQILAVTFTN 94 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ GL Sbjct: 95 KAAREMRERIGALLGEPVE--------------------------------------GLW 116 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T HA C ++++ + S F I D + +L+++ + + +D + Sbjct: 117 LGTFHALCARMLRRHAEYVGLGSGFTILDTDDQLRLLKQ----VIEPLRIDTKRWPPQGI 172 Query: 193 YEILEISNDEDI 204 +++ D + Sbjct: 173 LGVIQRWKDRGL 184 >gi|162147772|ref|YP_001602233.1| putative DNA helicase II [Gluconacetobacter diazotrophicus PAl 5] gi|161786349|emb|CAP55931.1| putative DNA helicase II [Gluconacetobacter diazotrophicus PAl 5] Length = 743 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 44/192 (22%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D + + EQ A + T V A AG+GKT +L R +LL+ A P +L +T T Sbjct: 18 DYLQRLNPEQRAAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLSGRARPYQILAVTFTN 77 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ GL Sbjct: 78 KAAREMRERIGALLGEPVE--------------------------------------GLW 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T HA C ++++ + S F I D + +L+++ + + +D + Sbjct: 100 LGTFHALCARMLRRHAEYVGLGSGFTILDTDDQLRLLKQ----VIEPLRIDTKRWPPQGI 155 Query: 193 YEILEISNDEDI 204 +++ D + Sbjct: 156 LGVIQRWKDRGL 167 >gi|332039917|gb|EGI76310.1| uvrd/rep helicase [Hylemonella gracilis ATCC 19624] Length = 1133 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 47/208 (22%), Positives = 98/208 (47%), Gaps = 14/208 (6%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-----ANAHPSTLLCLTHTKAAAAEMS 79 +A DP R V A AG+GKT +LV R+LR LL A +L +T TK AA EM Sbjct: 21 AIACDPRRHVAVEACAGAGKTWMLVSRILRALLGEQGDDGAQAHEILAITFTKKAAGEMR 80 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDM-SKARHLLITILETPGGLKVQTIHA 138 R+ E ++A++ D+ L AE+ ++ + + R L + +L+ ++++T H+ Sbjct: 81 QRLTEWLSAFACYDDDQLRAELRARGVEQARVDVLIAPLRGLHLRLLQQGRAVQIRTFHS 140 Query: 139 FCEAIMQQFPL----EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE--ELKKAF 192 + A+++ PL E + + + + + + ++ + + A ++ + ++ + + Sbjct: 141 WFAALLRNAPLAVLEELGLPAAYELLENDD--EVKAQVWRPFHARLLREQDQGGTVLADY 198 Query: 193 YEILEISNDEDIETLISDIISNRTALKL 220 ++ E + ++ R L Sbjct: 199 QAVVSRHGRSQTEKALEAVLDKRVEFAL 226 >gi|229844857|ref|ZP_04464995.1| DNA-dependent helicase II [Haemophilus influenzae 6P18H1] gi|229812238|gb|EEP47929.1| DNA-dependent helicase II [Haemophilus influenzae 6P18H1] Length = 726 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ Sbjct: 2 DISELLDGLNDKQREAVAA--PIGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + + Sbjct: 60 VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G+ + T H+ +++ L+ + F I D E Sbjct: 86 LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 123 >gi|307610545|emb|CBX00132.1| DNA helicase II [Legionella pneumophila 130b] Length = 721 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 43/187 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 + ++ + P + V A AGSGKT +LV R+ L+ + P +L +T T AA EM Sbjct: 11 NEKQRDAVTSPLGNMLVLAGAGSGKTKVLVSRIAWLIEEQHLSPHAILAVTFTNKAAGEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +++ + GL V T H Sbjct: 71 RSRLSSMLSTPTL--------------------------------------GLWVGTFHG 92 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++++ EAN+ F I D E ++I K + S+ LD + K + Sbjct: 93 LCHRLLRRHYKEANLPEQFHILDSEDQARVI----KRVILSLNLDPEQWQVKQAQAFINS 148 Query: 199 SNDEDIE 205 DE + Sbjct: 149 KKDEGLR 155 >gi|317182762|dbj|BAJ60546.1| helicase [Helicobacter pylori F57] Length = 938 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 12/178 (6%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSK--------ARHLLITILETPGGLKVQTIHAFCEA 142 + E + K + A+ + L +++ TI AF ++ Sbjct: 65 KENLENEKEKEKSQNILKELEEKYRLDPSFVQNSAQKIYQRFLN--AEIRISTIDAFFQS 122 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 I+++F ++++F + E +K ++ +S L+++ EEL + L + Sbjct: 123 ILRKFCWFVGLSANFEV--NEDTKAHQQQLNESFLSALNNKQLEELSVFIAQCLSYDS 178 >gi|239815308|ref|YP_002944218.1| UvrD/REP helicase [Variovorax paradoxus S110] gi|239801885|gb|ACS18952.1| UvrD/REP helicase [Variovorax paradoxus S110] Length = 1087 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 97/205 (47%), Gaps = 15/205 (7%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN----AHPSTLLCLTHTKAAAAEMSHR 81 +A DP RS V A AG+GKT +LV R+LR LL P +L +T TK AA EM R Sbjct: 21 VACDPRRSVAVEACAGAGKTWMLVSRILRALLEEGESACEPHEILAITFTKKAAGEMRER 80 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS--KARHLLITILETPGGLKVQTIHAF 139 + + + ++ S E L E+ I+G +P+ + + + + L +LE ++ +T HA+ Sbjct: 81 LDQWLEQFAERSPEELVRELV-IRGVEPDAALAAVPRLQGLYRRLLEGGRPVQFRTFHAW 139 Query: 140 CEAIMQQFPL----EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +++ PL E + +++ + +++ + + ++ D +E +Y + Sbjct: 140 FAGLLRNAPLAVLRELGLPANYELLEDDAEAR--SRTWRPFFEAVTAD--KEALADYYAV 195 Query: 196 LEISNDEDIETLISDIISNRTALKL 220 + + + ++ R L Sbjct: 196 VATYGRSQTAKALGEALTRRVEFSL 220 >gi|54297755|ref|YP_124124.1| DNA-dependent helicase II [Legionella pneumophila str. Paris] gi|148359389|ref|YP_001250596.1| DNA dependent ATPase I and helicase II [Legionella pneumophila str. Corby] gi|296107435|ref|YP_003619135.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Legionella pneumophila 2300/99 Alcoy] gi|53751540|emb|CAH12958.1| DNA helicase II [Legionella pneumophila str. Paris] gi|148281162|gb|ABQ55250.1| DNA dependent ATPase I and helicase II [Legionella pneumophila str. Corby] gi|295649336|gb|ADG25183.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Legionella pneumophila 2300/99 Alcoy] Length = 721 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 43/187 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 + ++ + P + V A AGSGKT +LV R+ L+ + P +L +T T AA EM Sbjct: 11 NEKQRDAVTSPLGNMLVLAGAGSGKTKVLVSRIAWLIEEQHLSPHAILAVTFTNKAAGEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +++ + GL V T H Sbjct: 71 RSRLSSMLSTPTL--------------------------------------GLWVGTFHG 92 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++++ EAN+ F I D E ++I K + S+ LD + K + Sbjct: 93 LCHRLLRRHYKEANLPEQFHILDSEDQARVI----KRVILSLNLDPEQWQVKQAQAFINS 148 Query: 199 SNDEDIE 205 DE + Sbjct: 149 KKDEGLR 155 >gi|77359094|ref|YP_338669.1| DNA-dependent helicase II [Pseudoalteromonas haloplanktis TAC125] gi|76874005|emb|CAI85226.1| DNA-dependent ATPase I and helicase II; highly similar to PSHA_1_2804 [Pseudoalteromonas haloplanktis TAC125] Length = 721 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 78/198 (39%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ +D ++ + + + A P ++ V A AGSGKT +LV R+ L+ + A ++ Sbjct: 2 DVSQLLDGLNDKQRDAVAA--PLQNMLVLAGAGSGKTRVLVHRIAWLMQVEQASTYSIFA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV E + A Sbjct: 60 VTFTNKAAKEMRTRVEETLKAPV------------------------------------- 82 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H I++ EA + F I D + ++I K L S+ +D+ + Sbjct: 83 -GGMWIGTFHGLSHRILRAHHREAKLPEAFQILDSDDQLRMI----KRLLKSMNIDDKKW 137 Query: 188 LKKAFYEILEISNDEDIE 205 K F + DE + Sbjct: 138 PAKQFGWYISAKKDEALR 155 >gi|85711578|ref|ZP_01042636.1| Superfamily I DNA helicase, UvrD [Idiomarina baltica OS145] gi|85694730|gb|EAQ32670.1| Superfamily I DNA helicase, UvrD [Idiomarina baltica OS145] Length = 724 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 45/195 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHT 71 I +++ ++ + A D R V A AGSGKT +LV R+ L+ P ++L +T T Sbjct: 6 LISGLNEKQATAVSADD--RPMLVLAGAGSGKTRVLVHRIAWLIQERRYSPYSILAVTFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA+EM RV +++ + + Sbjct: 64 NKAASEMRGRVEQLLGSSVR--------------------------------------NM 85 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H +++ ++ + +F I D + ++L K + S+ LD K Sbjct: 86 WIGTFHGLAHRLLRAHYMDVGLPQNFQILDSDDQQRL----VKRLIKSMNLDEKRWPAKQ 141 Query: 192 FYEILEISNDEDIET 206 + DE + Sbjct: 142 AQWYINGKKDEGLRA 156 >gi|54294730|ref|YP_127145.1| DNA-dependent helicase II [Legionella pneumophila str. Lens] gi|53754562|emb|CAH16046.1| DNA helicase II [Legionella pneumophila str. Lens] Length = 721 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 43/187 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 + ++ + P + V A AGSGKT +LV R+ L+ + P +L +T T AA EM Sbjct: 11 NEKQRDAVTSPLGNMLVLAGAGSGKTKVLVSRIAWLIEEQHLSPHAILAVTFTNKAAGEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +++ + GL V T H Sbjct: 71 RSRLSSMLSTPTL--------------------------------------GLWVGTFHG 92 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++++ EAN+ F I D E ++I K + S+ LD + K + Sbjct: 93 LCHRLLRRHYKEANLPEQFHILDSEDQARVI----KRVILSLNLDPEQWQVKQAQAFINS 148 Query: 199 SNDEDIE 205 DE + Sbjct: 149 KKDEGLR 155 >gi|213968510|ref|ZP_03396653.1| DNA helicase II [Pseudomonas syringae pv. tomato T1] gi|301384752|ref|ZP_07233170.1| DNA-dependent helicase II [Pseudomonas syringae pv. tomato Max13] gi|302133168|ref|ZP_07259158.1| DNA-dependent helicase II [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926798|gb|EEB60350.1| DNA helicase II [Pseudomonas syringae pv. tomato T1] gi|330878141|gb|EGH12290.1| DNA-dependent helicase II [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330964448|gb|EGH64708.1| DNA-dependent helicase II [Pseudomonas syringae pv. actinidiae str. M302091] Length = 727 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ++ ++ + + + AS + V A AGSGKT +LV R+ L+ + A P ++L Sbjct: 4 DLSVLLNSLNDAQRQAVAASLGRQ--LVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLS 61 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 62 VTFTNKAAAEMRHRIEQLMGI--------------------------------------S 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 P G+ V T H +++ EA + F I D + ++L K + + LD Sbjct: 84 PAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRW 139 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 140 PARQAQWFINGQKDEGLR 157 >gi|296115176|ref|ZP_06833817.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769] gi|295978277|gb|EFG85014.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769] Length = 747 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 44/192 (22%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D +++ EQ A + T V A AG+GKT +L R +LL+ A P+ +L +T T Sbjct: 17 DYLARLNPEQRAAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLSGRARPNQILAVTFTN 76 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ A GL Sbjct: 77 KAAREMRERVAGLLGAPVE--------------------------------------GLW 98 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ C ++++ ++ F I D + +L+++ + +D + Sbjct: 99 LGTFHSLCARMLRRHAEYVGLSGSFTILDTDDQVRLLKQ----VIEPRHIDTKRWPPQGI 154 Query: 193 YEILEISNDEDI 204 +++ D + Sbjct: 155 MGVIQRWKDRGL 166 >gi|328542978|ref|YP_004303087.1| DNA helicase II protein [Polymorphum gilvum SL003B-26A1] gi|326412724|gb|ADZ69787.1| DNA helicase II protein [Polymorphum gilvum SL003B-26A1] Length = 812 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 74/192 (38%), Gaps = 43/192 (22%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D ++ EQ A + V A AG+GKT +L R+ +L + A PS +L +T T Sbjct: 44 DYLAGLNPEQRQAVETIDGPVLVLAGAGTGKTRVLTTRIAHILSSGRAWPSQILAVTFTN 103 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I G Sbjct: 104 KAAREMRERIGHLIGG-------------------------------------NVDGMAW 126 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ C I+++ ++S F+I D + +L+++ + + LD+ +AF Sbjct: 127 LGTFHSICVKILRRHAELVGLSSGFSILDTDDQLRLMKQ----VIQAEGLDDKRWTARAF 182 Query: 193 YEILEISNDEDI 204 +++ + + Sbjct: 183 ASLVDGWKNRAL 194 >gi|91788136|ref|YP_549088.1| UvrD/REP helicase [Polaromonas sp. JS666] gi|91697361|gb|ABE44190.1| UvrD/REP helicase [Polaromonas sp. JS666] Length = 1095 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 107/241 (44%), Gaps = 29/241 (12%) Query: 1 MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60 ++++ +++ + E I + +A +P RS V A AG+GKT +LV R++R LL A Sbjct: 3 VVHYAAYECNGEPISADAFY----AIACNPRRSVAVEACAGAGKTWMLVSRIVRALLDGA 58 Query: 61 --------HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT---------K 103 P +L +T TK AA EM R+ + + A+ H D L E+ Sbjct: 59 GGGPDAQVRPHEILAITFTKKAAGEMRERLDDWLKAFVHADDATLQRELEMRGVRFGDSS 118 Query: 104 IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL----EANITSHFAI 159 +G K + +L +IL + ++++T H++ A+++ P+ + ++ + Sbjct: 119 EKGLKAALEMRKQLSNLYRSILASGRSVQIRTFHSWFAALLRSAPVAVLQRLGLPVNYEL 178 Query: 160 ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALK 219 +++ + + + A++ ++ LK F ++ + + + RT Sbjct: 179 LEDDAPARAL--VWRRFYATVAASDS--LKADFEAVVLAHGRFQADKALQTALDKRTEFT 234 Query: 220 L 220 L Sbjct: 235 L 235 >gi|154707778|ref|YP_001424668.1| ATP-dependent nuclease subunit A [Coxiella burnetii Dugway 5J108-111] gi|154357064|gb|ABS78526.1| ATP-dependent nuclease subunit A [Coxiella burnetii Dugway 5J108-111] Length = 1110 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 13/222 (5%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 + A DP +S V A AGSGKT +L+QR L+LL P ++ +T T+ AAAEM R++ Sbjct: 7 RQQALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRERII 66 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + ++ K + + + +H + P L++ TI A I Sbjct: 67 AALNEAQTQPA---PSDSHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQI 123 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-- 201 Q P+ + + + E+ + EA S EE E+L ++ Sbjct: 124 CSQMPILCGFGAPPSTLEPEEIVEFYREAVIRLFES------EEHADTIEELLLHLDNKA 177 Query: 202 EDIETLISDIISNRTALK--LIFFFFSYLWRRKIIEKSLWSI 241 E +ETL+ ++ R +I + + + +EK+L +I Sbjct: 178 ESLETLLIKMLIRREQWLPHIINHYRNPNAIKNELEKALTTI 219 >gi|161723247|ref|YP_095868.2| DNA-dependent helicase II [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 721 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 43/187 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 + ++ + P + V A AGSGKT +LV R+ L+ + P +L +T T AA EM Sbjct: 11 NEKQRDAVTSPLGNMLVLAGAGSGKTKVLVSRIAWLIEEQHLSPHAILAVTFTNKAAGEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +++ + GL V T H Sbjct: 71 RSRLSSMLSTPTL--------------------------------------GLWVGTFHG 92 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++++ EAN+ F I D E ++I K + S+ LD + K + Sbjct: 93 LCHRLLRRHYKEANLPEQFHILDSEDQARVI----KRVILSLNLDPEQWQVKQAQAFINS 148 Query: 199 SNDEDIE 205 DE + Sbjct: 149 KKDEGLR 155 >gi|331017795|gb|EGH97851.1| DNA-dependent helicase II [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 727 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ++ ++ + + + AS + V A AGSGKT +LV R+ L+ + A P ++L Sbjct: 4 DLSVLLNSLNDAQRQAVAASLGRQ--LVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLS 61 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 62 VTFTNKAAAEMRHRIEQLMGI--------------------------------------S 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 P G+ V T H +++ EA + F I D + ++L K + + LD Sbjct: 84 PAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRW 139 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 140 PARQAQWFINGQKDEGLR 157 >gi|255590468|ref|XP_002535279.1| conserved hypothetical protein [Ricinus communis] gi|223523578|gb|EEF27105.1| conserved hypothetical protein [Ricinus communis] Length = 436 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 12/205 (5%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L+ T + Q S V A AG+GKT +L QR L+LL P ++ +T T AA Sbjct: 7 LLEDTLNRQRALE--LESFIVEAPAGAGKTELLTQRYLKLLAVVNEPEEIVAITFTNKAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM RVL+ + + D I + K ++ ++++ L +L PG L++ T Sbjct: 65 AEMRSRVLQSLQDAA---DAIPIDKPHKQTTRELALHALARSAELGWDLLAQPGRLRINT 121 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I + + +Q PL + + A++++ L EA + TLA + +E A E Sbjct: 122 IDSLSSNLARQMPLMSRFGAQPAVSEDVGVHYL--EAARRTLAML---EDEGGNGAVTEA 176 Query: 196 LEISNDEDIE--TLISDIISNRTAL 218 L +++ + L++++++ R Sbjct: 177 LRYLDNDTVRLSNLLAEMLARRDQW 201 >gi|212212385|ref|YP_002303321.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuG_Q212] gi|212010795|gb|ACJ18176.1| ATP-dependent nuclease subunit A [Coxiella burnetii CbuG_Q212] Length = 1110 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 13/222 (5%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 + A DP +S V A AGSGKT +L+QR L+LL P ++ +T T+ AAAEM R++ Sbjct: 7 RQQALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRERII 66 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + ++ K + + + +H + P L++ TI A I Sbjct: 67 AALNEAQTQPA---PSDSHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQI 123 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-- 201 Q P+ + + + E+ + EA S EE E+L ++ Sbjct: 124 CSQMPILCGFGAPPSTLEPEEIVEFYREAVIRFFES------EEHADTIEELLLHLDNKA 177 Query: 202 EDIETLISDIISNRTALK--LIFFFFSYLWRRKIIEKSLWSI 241 E +ETL+ ++ R +I + + + +EK+L +I Sbjct: 178 ESLETLLIKMLIRREQWLPHIINHYRNPNAIKNELEKALATI 219 >gi|161830545|ref|YP_001597082.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 331] gi|161762412|gb|ABX78054.1| UvrD/REP helicase family protein [Coxiella burnetii RSA 331] Length = 1110 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 13/222 (5%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 + A DP +S V A AGSGKT +L+QR L+LL P ++ +T T+ AAAEM R++ Sbjct: 7 RQQALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRERII 66 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + ++ K + + + +H + P L++ TI A I Sbjct: 67 AALNEAQTQPA---PSDSHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQI 123 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-- 201 Q P+ + + + E+ + EA S EE E+L ++ Sbjct: 124 CSQMPILCGFGAPPSTLEPEEIVEFYREAVIRFFES------EEHADTIEELLLHLDNKA 177 Query: 202 EDIETLISDIISNRTALK--LIFFFFSYLWRRKIIEKSLWSI 241 E +ETL+ ++ R +I + + + +EK+L +I Sbjct: 178 ESLETLLIKMLIRREQWLPHIINHYRNPNAIKNELEKALTTI 219 >gi|29654533|ref|NP_820225.1| ATP-dependent nuclease subunit A [Coxiella burnetii RSA 493] gi|29541800|gb|AAO90739.1| ATP-dependent nuclease subunit A [Coxiella burnetii RSA 493] Length = 1110 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 96/222 (43%), Gaps = 13/222 (5%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 + A DP +S V A AGSGKT +L+QR L+LL P ++ +T T+ AAAEM R++ Sbjct: 7 RQQALDPQQSFIVQAPAGSGKTELLIQRFLKLLATAKMPEEIIAITFTRKAAAEMRERII 66 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + ++ K + + + +H + P L++ TI A I Sbjct: 67 AALNEAQTQPA---PSDSHKKLTWTLARKVIERNQHYDWQLDMNPNRLRLLTIDALANQI 123 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-- 201 Q P+ + + + E+ + EA S EE E+L ++ Sbjct: 124 CSQMPILCGFGAPPSTLEPEEIVEFYREAVIRFFES------EEHADTIEELLLHLDNKA 177 Query: 202 EDIETLISDIISNRTALK--LIFFFFSYLWRRKIIEKSLWSI 241 E +ETL+ ++ R +I + + + +EK+L +I Sbjct: 178 ESLETLLIKMLIRREQWLPHIINHYRNPNAIKNELEKALTTI 219 >gi|163815442|ref|ZP_02206815.1| hypothetical protein COPEUT_01605 [Coprococcus eutactus ATCC 27759] gi|158449079|gb|EDP26074.1| hypothetical protein COPEUT_01605 [Coprococcus eutactus ATCC 27759] Length = 1303 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 98/233 (42%), Gaps = 37/233 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL------------ANAHPST 64 IS TK + + + V+A AGSGKT +LV+R++ ++L + Sbjct: 6 ISWTKQQAHVIDTRIGNLLVAAAAGSGKTAVLVERIIEMVLGVDSNGNKLPDQDRVNVDE 65 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 LL +T T AAAA+M ++ L +I + + K L+ Sbjct: 66 LLVVTFTNAAAAQMKEKI-----------SAALQKKIDEYMANGIYDEHLIKQMTLI--- 111 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 ++ TI +FC I++++ + + S F IAD+ + + + ++ + S D Sbjct: 112 ----NHAEICTIDSFCLHIVKEYFAKVQLDSAFDIADKTEMEIIKKDVMDKVMESCYQDE 167 Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 N L F +++ ++ +T + ++++ L+ SY R I + Sbjct: 168 N--LVPGFIKLVRTFAVKERDTEVPALVTH-----LMQVISSYPDRHGWIRDA 213 >gi|315585943|gb|ADU40324.1| helicase [Helicobacter pylori 35A] Length = 949 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 12/178 (6%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSK--------ARHLLITILETPGGLKVQTIHAFCEA 142 + E + K + A+ + L +++ TI AF ++ Sbjct: 65 KENLENEKEKEKSQNILKELEEKYRLDPSFVQNSAQKIYQRFLN--AEIRISTIDAFFQS 122 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 I+++F ++++F + E +K ++ +S L+++ EEL + L + Sbjct: 123 ILRKFCWFVGLSANFEV--NEDTKAYQQQLNESFLSALNNKQLEELSVFIAQCLSYDS 178 >gi|300742291|ref|ZP_07072312.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa M567] gi|300381476|gb|EFJ78038.1| ATP-dependent DNA helicase PcrA [Rothia dentocariosa M567] Length = 844 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ID ++ + E +L + + A AGSGKT +L R+ LL A P +L +T T Sbjct: 1 MIDGLNDRQREAVLHA--GSPLLIVAGAGSGKTRVLTHRIAHLLATGRATPGQILAITFT 58 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM R+ +I +A+H + Sbjct: 59 NKAAAEMRERIQALIG---------------------------PRAQH-----------M 80 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+FC ++++ + S F I D S++L+ K Sbjct: 81 WISTFHSFCVRVLRREAKALGLKSTFTIYDSADSQRLLTLIIKEL 125 >gi|28872621|ref|NP_795240.1| DNA helicase II [Pseudomonas syringae pv. tomato str. DC3000] gi|28855877|gb|AAO58935.1| DNA helicase II [Pseudomonas syringae pv. tomato str. DC3000] Length = 727 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ++ ++ + + + AS + V A AGSGKT +LV R+ L+ + A P ++L Sbjct: 4 DLSVLLNSLNDAQRQAVAASLGRQ--LVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLS 61 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + Sbjct: 62 VTFTNKAAAEMRHRIEQLMGI--------------------------------------S 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 P G+ V T H +++ EA + F I D + ++L K + + LD Sbjct: 84 PAGMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQLW 139 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 140 PARQAQWFINGQKDEGLR 157 >gi|329121403|ref|ZP_08250028.1| putative ATP-dependent deoxyribonuclease subunit A [Dialister micraerophilus DSM 19965] gi|327469693|gb|EGF15160.1| putative ATP-dependent deoxyribonuclease subunit A [Dialister micraerophilus DSM 19965] Length = 1285 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 89/221 (40%), Gaps = 27/221 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T S+ + +SA AGSGKT +LV+R++R + P + LL LT TKAAA Sbjct: 6 WTSSQSEALKSRNCNLLLSAAAGSGKTAVLVERIIRRITDLDDPTDVTDLLVLTFTKAAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM RV + K K K L + G + T Sbjct: 66 SEMKSRVTIALNNALS----------------KAAKEHNEKLVMHLHKQIALMSGAQFST 109 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 + +F I++Q+ NI +I + ++ L+++ L+ I+ K F Sbjct: 110 LDSFFLGIVRQYFYLINIPPDISIINNQKELYLMQQ---EILSEILEKYYSSNDKDFLNC 166 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ + +T + +II LKL F S + + + Sbjct: 167 ADMFAGKFRDTKLKEII-----LKLYTFSCSMPFPEEWLNS 202 >gi|189499756|ref|YP_001959226.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1] gi|189495197|gb|ACE03745.1| UvrD/REP helicase [Chlorobium phaeobacteroides BS1] Length = 735 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 59/166 (35%), Gaps = 39/166 (23%) Query: 13 TIDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 ID++ Q +Q V A AGSGKT ++ R+ L+ P +L LT Sbjct: 1 MIDILEQLNDVQQQAVQKTDGPVMVLAGAGSGKTRVITYRLAYLIGQKQVAPHQILALTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ E++ S G Sbjct: 61 TNKAANEMRQRIDELLHPGSSR-------------------------------------G 83 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L + T H+ +++ + +F+I D + SK LI + K Sbjct: 84 LWIGTFHSIFARLLRNYIHLIGYDGNFSIYDSDDSKSLIRQVMKEL 129 >gi|253998950|ref|YP_003051013.1| UvrD/REP helicase [Methylovorus sp. SIP3-4] gi|253985629|gb|ACT50486.1| UvrD/REP helicase [Methylovorus sp. SIP3-4] Length = 1137 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 97/228 (42%), Gaps = 16/228 (7%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L++Q + A + S V A AG+GKT +L QR L+LL P ++ +T T AA Sbjct: 12 LLAQDDESRRRALE-LESFIVEAPAGAGKTELLTQRYLKLLTTVREPEEIIAITFTNKAA 70 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+L+ + ++ K + + A +LE P L++ T Sbjct: 71 AEMRARILDSL---LMADSGERPPQLHKQMTFALGQDALQHAAERGWHLLENPARLRIFT 127 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I + + +Q PL + + A+ E + + A + TL D + A + Sbjct: 128 IDSLSSHLARQMPLMSRFGAQPAVT--EDASAYYQLAAERTL-----DLADGSSDAVTQA 180 Query: 196 LEISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 L +++ + L++D+++ R + R++ E +L + Sbjct: 181 LRYVDNDSLRLTQLLADMLAKRDQWLPYA---NRTDTRELAEAALQHL 225 >gi|86135193|ref|ZP_01053775.1| UvrD/REP helicase [Polaribacter sp. MED152] gi|85822056|gb|EAQ43203.1| UvrD/REP helicase [Polaribacter sp. MED152] Length = 1047 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 85/186 (45%), Gaps = 6/186 (3%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMS 79 ++L+ P +A+AGSGKT LV+ L++LL+ +L +T T AA EM Sbjct: 3 KKLVVQKPEIFEVYNASAGSGKTFTLVKEYLKVLLSADDIFTFQKILAITFTNKAAGEMK 62 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RVL + +++ + L I+ + +++ ++ IL+ + TI +F Sbjct: 63 ERVLSNLESFAEGEENDLFTIISNEIAVDKETIQV-RSKKIIDVILQNYSAFSITTIDSF 121 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 I++ F + ++ +F + E + L+ EA ++ I D Y + +I Sbjct: 122 THKIIKSFAYDLGLSLNFEV--EMDAVSLLNEAVDVLISKIGTDKKLTKLLIDYSLDKID 179 Query: 200 NDEDIE 205 +D+ + Sbjct: 180 DDKSWD 185 >gi|313891437|ref|ZP_07825053.1| ATP-dependent nuclease subunit A [Dialister microaerophilus UPII 345-E] gi|313120212|gb|EFR43388.1| ATP-dependent nuclease subunit A [Dialister microaerophilus UPII 345-E] Length = 1283 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 89/221 (40%), Gaps = 27/221 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T S+ + +SA AGSGKT +LV+R++R + P + LL LT TKAAA Sbjct: 6 WTSSQSEALKSRNCNLLLSAAAGSGKTAVLVERIIRRITDLDDPTDVTDLLVLTFTKAAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM RV + K K K L + G + T Sbjct: 66 SEMKSRVTIALNNALS----------------KAAKEHNEKLVMHLHKQIALMSGAQFST 109 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 + +F I++Q+ NI +I + ++ L+++ L+ I+ K F Sbjct: 110 LDSFFLGIVRQYFYLINIPPDISIINNQKELYLMQQ---EILSEILEKYYSSNDKDFLNC 166 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ + +T + +II LKL F S + + + Sbjct: 167 ADMFAGKFRDTKLKEII-----LKLYTFSCSMPFPEEWLNS 202 >gi|68249734|ref|YP_248846.1| DNA-dependent helicase II [Haemophilus influenzae 86-028NP] gi|68057933|gb|AAX88186.1| DNA helicase II [Haemophilus influenzae 86-028NP] Length = 727 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 61/158 (38%), Gaps = 37/158 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + + + A P + V A AGSGKT +L R+ L+ + N +++ Sbjct: 3 DISELLDGLNDKQRKAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + + Sbjct: 61 VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 86 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G+ + T H+ +++ L+ + F I D E Sbjct: 87 LVGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 124 >gi|325843353|ref|ZP_08167936.1| ATP-dependent nuclease subunit A [Turicibacter sp. HGF1] gi|325489382|gb|EGC91755.1| ATP-dependent nuclease subunit A [Turicibacter sp. HGF1] Length = 1198 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 24/225 (10%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAA 76 + + +SA AGSGKT +LV+R++ +++ + LL +T T+AAAA Sbjct: 12 TWNDEQWEAIYRKGEDLLISAGAGSGKTAVLVERMIQKIIQEKLNIDELLVMTFTEAAAA 71 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ I K+P + L + T Sbjct: 72 EMKQRMRSRI---------------QDELEKQPYNEHLKVQ-------LNKISQSHISTF 109 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFC +++++ + F IAD+ + + +E +S + D +E + Sbjct: 110 HAFCNKLIKRYYYLLELDPVFKIADDIEVGIIQDEVVESLFDDLSDDEDESYLLLSRQFN 169 Query: 197 EISNDEDIETLISDIIS-NRTALKLIFFFFSYLWRRKIIEKSLWS 240 NDE+++ ++ I R+ ++I + + + E+ L S Sbjct: 170 NDRNDENLKVMLLKIYELARSNPEMIQWLENLPHLYQWDEQDLMS 214 >gi|270157153|ref|ZP_06185810.1| putative ATP-dependent DNA helicase [Legionella longbeachae D-4968] gi|289164442|ref|YP_003454580.1| UvrD/REP helicase family protein [Legionella longbeachae NSW150] gi|269989178|gb|EEZ95432.1| putative ATP-dependent DNA helicase [Legionella longbeachae D-4968] gi|288857615|emb|CBJ11455.1| putative UvrD/REP helicase family protein [Legionella longbeachae NSW150] Length = 1084 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 93/205 (45%), Gaps = 11/205 (5%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L+ T+ Q A+DP+ S V A AGSGKT IL QR LRLL P ++ LT T+ AA Sbjct: 2 LVDSTQRSQ--ATDPSLSYIVQAPAGSGKTEILTQRYLRLLSTVKAPEQIVALTFTRKAA 59 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+L + ++ + + + H +L+ PG L+V T Sbjct: 60 SEMRERILLALQQAANHQPANSPHQQMTLDFADKA---LHSDAHYQWNLLQQPGRLRVIT 116 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I + C++I Q PL ++ I D+ S L A + + M + ++A + Sbjct: 117 IDSLCQSINQAIPLLEKQIAYAQITDKTSSHYL--NAGRHCIQYAMATP--QYQEAIKTL 172 Query: 196 LEISNDEDIE--TLISDIISNRTAL 218 L ++ L S+++S R Sbjct: 173 LLHVDNRQDRLLDLFSELLSQRDQW 197 >gi|148978468|ref|ZP_01814942.1| DNA-dependent helicase II [Vibrionales bacterium SWAT-3] gi|145962375|gb|EDK27655.1| DNA-dependent helicase II [Vibrionales bacterium SWAT-3] Length = 724 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + + A AGSGKT +LV R+ L + A P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLQSVEQASPFSIMSVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ S Sbjct: 63 FTNKAAAEMRGRIEELMMGSS--------------------------------------S 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + +L+ + + + LD + Sbjct: 85 GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQIRLL----RRLIKAQNLDEKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 K + DE + Sbjct: 141 KQASWWINGKKDEGLR 156 >gi|86148257|ref|ZP_01066553.1| DNA helicase II [Vibrio sp. MED222] gi|218710970|ref|YP_002418591.1| DNA-dependent helicase II [Vibrio splendidus LGP32] gi|85833953|gb|EAQ52115.1| DNA helicase II [Vibrio sp. MED222] gi|218323989|emb|CAV20351.1| DNA helicase II [Vibrio splendidus LGP32] Length = 724 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + + A AGSGKT +LV R+ L + A P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLQSVEQASPFSIMSVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ S Sbjct: 63 FTNKAAAEMRGRIEELMMGSS--------------------------------------S 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + +L+ + + + LD + Sbjct: 85 GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQIRLL----RRLIKAQNLDEKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 K + DE + Sbjct: 141 KQASWWINGKKDEGLR 156 >gi|220931077|ref|YP_002507985.1| ATP-dependent DNA helicase PcrA [Halothermothrix orenii H 168] gi|219992387|gb|ACL68990.1| ATP-dependent DNA helicase PcrA [Halothermothrix orenii H 168] Length = 715 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 76/197 (38%), Gaps = 44/197 (22%) Query: 11 SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 S++ D+++ EQ A + + A AGSGKT +L R+ L+ +P +L + Sbjct: 3 SDSSDILTGLNPEQKKAVEHFEGPLLILAGAGSGKTRVLTHRIAYLIENYGVNPLQILAV 62 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV ++ + Sbjct: 63 TFTNKAAGEMKERVDNLLGGMA-------------------------------------- 84 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 G L V T H+ C I+++ + ++F I D + +KLI L + LD + Sbjct: 85 GDLWVSTFHSLCARILRKEIGKIGYDNNFVIFDTDDQQKLIS----RILKELNLDPKKTR 140 Query: 189 KKAFYEILEISNDEDIE 205 +A + + +E I+ Sbjct: 141 PRAILSEISRAKNELID 157 >gi|84393655|ref|ZP_00992406.1| DNA helicase II [Vibrio splendidus 12B01] gi|84375723|gb|EAP92619.1| DNA helicase II [Vibrio splendidus 12B01] Length = 724 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 45/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D ++ + E + A P + + A AGSGKT +LV R+ L + A P +++ +T Sbjct: 5 SLLLDGLNDKQREAVAA--PLENLLILAGAGSGKTRVLVHRIAWLQSVEQASPFSIMSVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R+ E++ S Sbjct: 63 FTNKAAAEMRGRIEELMMGSS--------------------------------------S 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ T H C I++ L+A + F I D + +L+ + + + LD + Sbjct: 85 GMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQIRLL----RRLIKAQNLDEKQWPA 140 Query: 190 KAFYEILEISNDEDIE 205 K + DE + Sbjct: 141 KQASWWINGKKDEGLR 156 >gi|172040209|ref|YP_001799923.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum DSM 7109] gi|171851513|emb|CAQ04489.1| putative ATP-dependent DNA helicase II [Corynebacterium urealyticum DSM 7109] Length = 1022 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 L++ +Q A T S + A AGSGKT +L +R+ LL P +L +T T A Sbjct: 164 LLAGLNPQQKEAVQHTGSPLLIVAGAGSGKTSVLTRRIAWLLSTGVAPWQILAITFTNKA 223 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + V Sbjct: 224 AAEMRERVADLVGPAAE--------------------------------------RMWVS 245 Query: 135 TIHAFCEAIMQQFPLE-ANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I++ A + ++F I D + SK+LI K Sbjct: 246 TFHSMCVRILRSNAHLVAGLNTNFTIYDSDDSKRLITMVIKD 287 >gi|329894799|ref|ZP_08270599.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium IMCC3088] gi|328922693|gb|EGG30027.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium IMCC3088] Length = 715 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 73/199 (36%), Gaps = 45/199 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + +E +D ++ + E + A +A V A AGSGKT +LV R+ L+ P +LL Sbjct: 2 DVTELLDGLNPAQREAVAAE--PGNALVLAGAGSGKTRVLVHRIAWLIRAEGFSPQSLLA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R ++ +H Sbjct: 60 VTFTNKAAKEMRGRTESMLGLSTH------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G V T H +++ EA + +F I D + +L++ K + LD+ Sbjct: 84 --GFWVGTFHGLAHRLLKAHWREAGLQQNFQILDSDDQLRLVKRIVK----ELGLDDGRW 137 Query: 188 LKKAFYEILEISNDEDIET 206 K + DE + Sbjct: 138 PPKQIQGFVNAQKDEGLRA 156 >gi|134093954|ref|YP_001099029.1| putative exonuclease V [Herminiimonas arsenicoxydans] gi|133737857|emb|CAL60902.1| putative ATP-dependent exoDNAse (exonuclease V) beta subunit RecB [Herminiimonas arsenicoxydans] Length = 1096 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 55/219 (25%), Positives = 103/219 (47%), Gaps = 4/219 (1%) Query: 2 IYHNSFQEHSETIDLISQTKSE-QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60 ++ N+ + I+ + +A DP RS V A AGSGKT +LV RVLRLLLA Sbjct: 4 LHINTSAPRAYEINGVQADAERFVAIACDPARSVVVEACAGSGKTWLLVARVLRLLLAGT 63 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN-KSDMSKARH 119 P+ +L +T T+ AA EM R+++++ + + + + + + + AR Sbjct: 64 EPAAILAITFTRKAAQEMRERLMQLLHELTLKPEADVLTLLRERGVADHELLALLPLARG 123 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 L +L +P L + T H++ ++Q PL + + +A+ + + +L +A + + Sbjct: 124 LYERVLRSPQALSIDTFHSWFARLVQIAPLASGVPHGYALTES--TGELSSDAYSRFMQT 181 Query: 180 IMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTAL 218 + +N+E+K A + D + L+ R Sbjct: 182 VNEADNQEVKDALIALYAQVGDSNARNLLDAFAGKRAEW 220 >gi|148951|gb|AAC36867.1| DNA helicase II [Haemophilus influenzae] gi|739972|prf||2004269A DNA helicase II Length = 727 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ Sbjct: 3 DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + + Sbjct: 61 VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 86 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G+ + T H+ +++ L+ + F I D E Sbjct: 87 LFGMWIGTFHSIARRLLRAHHLDVGLPQDFQILDSEDQ 124 >gi|88811284|ref|ZP_01126540.1| DNA-dependent ATPase I and helicase II [Nitrococcus mobilis Nb-231] gi|88791823|gb|EAR22934.1| DNA-dependent ATPase I and helicase II [Nitrococcus mobilis Nb-231] Length = 736 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 46/200 (23%), Positives = 76/200 (38%), Gaps = 45/200 (22%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPS 63 ++ + S ID ++ + E + A P V A AGSGKT +L R LL A Sbjct: 9 SAIVDSSNLIDSLNAAQREAVTA--PCGRTLVLAGAGSGKTRVLTHRAAWLLQAEEASAY 66 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 ++L +T T AAAEM R+ ++ + Sbjct: 67 SILAVTFTNKAAAEMRGRIAGLVGIAA--------------------------------- 93 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 GG+ + T H +++ EA + HF I D E ++LI + TL ++ +D Sbjct: 94 -----GGMWIGTFHGLAHRLLRLHWREAGLPQHFQILDAEDQRRLI----RRTLRNLEID 144 Query: 184 NNEELKKAFYEILEISNDED 203 + + + DE Sbjct: 145 ESRWPPRQIQGFINARKDEG 164 >gi|145631236|ref|ZP_01787009.1| DNA helicase II [Haemophilus influenzae R3021] gi|144983163|gb|EDJ90658.1| DNA helicase II [Haemophilus influenzae R3021] Length = 726 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 37/158 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ Sbjct: 2 DISELLDGLNDKQHEAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + + Sbjct: 60 VTFTNKAAAEMRHRIQSTLAKHAQ----------------------------------HQ 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G+ + T H+ +++ L+ + F I D E Sbjct: 86 LFGMWIGTFHSIAHRLLRAHHLDVGLPQDFQILDSEDQ 123 >gi|120556547|ref|YP_960898.1| DNA-dependent helicase II [Marinobacter aquaeolei VT8] gi|120326396|gb|ABM20711.1| ATP-dependent DNA helicase UvrD [Marinobacter aquaeolei VT8] Length = 726 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 75/199 (37%), Gaps = 45/199 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ID ++ + E + A V A AGSGKT +LV R+ L+ + P+++L Sbjct: 7 DVSHIIDSLNDAQREAVTAQ--NDHLLVLAGAGSGKTRVLVHRMAWLMSVDRVPPTSILA 64 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM +RV +++ + Sbjct: 65 VTFTNKAAKEMRYRVEQMMQIPTR------------------------------------ 88 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GL + T H +++ +A + +F + D + +LI+ + +D ++ Sbjct: 89 --GLWIGTFHGIAHRLLRSHWKDAGLPENFQVLDSDDQLRLIKRVMREN----RIDESQW 142 Query: 188 LKKAFYEILEISNDEDIET 206 K + DE + Sbjct: 143 PPKQAQWFINSQKDEGLRA 161 >gi|119943802|ref|YP_941482.1| UvrD/REP helicase [Psychromonas ingrahamii 37] gi|119862406|gb|ABM01883.1| UvrD/REP helicase [Psychromonas ingrahamii 37] Length = 723 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 74/199 (37%), Gaps = 45/199 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ID ++ ++ S P ++ V A AGSGKT +L R+ L+ + N ++L Sbjct: 2 DVSYLIDDLND--HQRAAVSAPEQNMLVLAGAGSGKTRVLTHRIAWLMQVENIPTYSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ +I + Sbjct: 60 VTFTNKAAKEMRGRITDICP--------------------------------------QQ 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ + T H +++ EAN+ F I D + KK+ K + S+ LD Sbjct: 82 IGGMWIGTFHGTAHRLLRLHYQEANLPEQFQIIDSDDQKKM----VKRIIKSLNLDEKYY 137 Query: 188 LKKAFYEILEISNDEDIET 206 K + DE + Sbjct: 138 PAKELQWYINDKKDEGLRA 156 >gi|53804812|ref|YP_113512.1| DNA-dependent helicase II [Methylococcus capsulatus str. Bath] gi|53758573|gb|AAU92864.1| DNA helicase II [Methylococcus capsulatus str. Bath] Length = 726 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 78/228 (34%), Gaps = 46/228 (20%) Query: 11 SETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68 + D+I+ Q A + P RS V A AGSGKT +L+ R+ LL P +L + Sbjct: 1 MDITDIIAPLNEAQREAVTAPDRSLLVLAGAGSGKTRVLIHRIAWLLRAEGVSPHAILAV 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R+ ++ + Sbjct: 61 TFTNKAANEMKARLEALLDLSTR------------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 L V T H ++++ +A + F I D + +LI + L ++ LD Sbjct: 84 -DLWVGTFHGLAHRLLRRHAADAGLHEGFQILDSDDQYRLI----RRLLKTLELDEARWP 138 Query: 189 KKAFYEILEISND--EDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 + + D L ++ I+ + L +R + Sbjct: 139 PRQIQWYINAQKDQGRRARNLPDSYDPFERQMRRIYLAYEELCQRSGL 186 >gi|311896487|dbj|BAJ28895.1| putative ATP-dependent DNA helicase PcrA [Kitasatospora setae KM-6054] Length = 885 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 94/233 (40%), Gaps = 48/233 (20%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 ++ ++ ++ + E +L + + A AGSGKT +L R+ LL A P +L +T Sbjct: 99 AQLLEGMNDPQREAVLHA--GSPLLIVAGAGSGKTRVLTHRIAHLLAARGVQPGEILAIT 156 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV ++ + Sbjct: 157 FTNKAAGEMRERVEALVGPRAK-------------------------------------- 178 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + V T H+ C I+++ + + S F+I D S++L+ + + LD + Sbjct: 179 AMWVSTFHSACVRILRREAKQLGMNSSFSIYDSADSQRLMALVCRD----LDLDPKQFPP 234 Query: 190 KAF-YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 K+F +I + N+ E +D SN T KL + +L++R++ E + Sbjct: 235 KSFTSKISNLKNELIDEETYADQASNPTEKKLAEAY--FLYQRRLREANALDF 285 >gi|170718056|ref|YP_001785094.1| DNA-dependent helicase II [Haemophilus somnus 2336] gi|168826185|gb|ACA31556.1| DNA helicase II [Haemophilus somnus 2336] Length = 726 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 37/167 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLC 67 + SE ++ +++ + ++A P + V A AGSGKT +L R+ L P +++ Sbjct: 2 DISELLNDLNEKQRNAVVA--PLGNYLVLAGAGSGKTRVLTYRIAWLSAVEKIPESSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM HR+ + +SH + L Sbjct: 60 VTFTNKAATEMRHRIEATLARYSH--------------------------QRLF------ 87 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 G+ + T H+ +++ +A + F I D E +L++ K Sbjct: 88 --GMWIGTFHSIANRLLRSHYADAGLPQDFQILDSEDQLRLVKRLMK 132 >gi|283457344|ref|YP_003361920.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18] gi|283133335|dbj|BAI64100.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18] Length = 985 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 + ++ + A AGSGKT +L R+ LL + A P +L +T T AAAEM Sbjct: 144 NERQEEAVLHSGSPLLIVAGAGSGKTRVLTHRIAYLLATHRATPGQILAITFTNKAAAEM 203 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ ++ +A+H + + T H+ Sbjct: 204 RERIEALVG---------------------------PRAKH-----------MWISTFHS 225 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 FC ++++ + S F I D S++L+ K Sbjct: 226 FCVRVLRREAAALGLKSTFTIYDSTDSQRLLSLIIKEL 263 >gi|256380499|ref|YP_003104159.1| ATP-dependent DNA helicase PcrA [Actinosynnema mirum DSM 43827] gi|255924802|gb|ACU40313.1| ATP-dependent DNA helicase PcrA [Actinosynnema mirum DSM 43827] Length = 781 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 + +D ++ +++ V A AGSGKT +L +R+ LL AHP ++ +T Sbjct: 17 ASLLDGLN--PAQRRAVEHAGSPLLVVAGAGSGKTRVLTRRIAHLLAERGAHPGEIMAIT 74 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM RV +++ +AR Sbjct: 75 FTNKAAAEMKERVADLVG---------------------------PRARS---------- 97 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C ++++ I+S F+I D + +++LI + Sbjct: 98 -MWVSTFHSMCVRLVRREHKALGISSSFSIYDSDDTRRLITLVARDL 143 >gi|73540567|ref|YP_295087.1| ATP-dependent DNA helicase UvrD [Ralstonia eutropha JMP134] gi|72117980|gb|AAZ60243.1| ATP-dependent DNA helicase UvrD [Ralstonia eutropha JMP134] Length = 786 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 82/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ +EQL A P A + A AGSGKT +L R+ L+ P+ +L +T T Sbjct: 3 DLLANLNAEQLAAVTLPDEPALILAGAGSGKTRVLTTRIAWLIQNGRVSPAGILAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ G+ Sbjct: 63 KAAKEMQTRLSSMLPI--------------------------------------NTRGMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + FAI D + A K L ++ +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHFRDAGLPQTFAILDSQDQLS----ALKRLLKALNVDDEKYPAKNL 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + + NR + L + R +++ Sbjct: 141 QYFINNAKEQGLRPADVEANDDFNRRFVDLYAAYDQQCQREGVVD 185 >gi|90023404|ref|YP_529231.1| DNA-dependent helicase II [Saccharophagus degradans 2-40] gi|89953004|gb|ABD83019.1| ATP-dependent DNA helicase UvrD [Saccharophagus degradans 2-40] Length = 724 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 74/198 (37%), Gaps = 40/198 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D +++ + E + A P + V A AGSGKT +LV R+ + + P ++ Sbjct: 2 DVSYLLDGLNEPQREAVSA--PLGNILVLAGAGSGKTRVLVHRIAWHIQVEGLSPHQIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R + +I G++ S + Sbjct: 60 VTFTNKAAREMRSR-------------------LDEIMGERLGPSGVR------------ 88 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + V T H +++ EA + +F I D + + K + +D++ Sbjct: 89 --SMWVGTFHGIAHRLLKAHWQEAGLPQNFQILDSDDQLR----VVKRVYQELQIDDSRF 142 Query: 188 LKKAFYEILEISNDEDIE 205 K + DE I Sbjct: 143 PFKQAQWFINGQKDEGIR 160 >gi|313884923|ref|ZP_07818675.1| ATP-dependent DNA helicase PcrA [Eremococcus coleocola ACS-139-V-Col8] gi|312619614|gb|EFR31051.1| ATP-dependent DNA helicase PcrA [Eremococcus coleocola ACS-139-V-Col8] Length = 787 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 80/193 (41%), Gaps = 45/193 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 ++IDL++ + + +L ++ ++A AGSGKT +L R+ L+ +P +L +T Sbjct: 6 KSIDLLNDRQRQAVLTTE--GPVLIAAGAGSGKTRVLTHRIAYLVQAKQVNPWNILAITF 63 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV ++ + Sbjct: 64 TNKAANEMKERVQALVGPAAE--------------------------------------S 85 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + V T HA C I+++ + +S+F I D+ + L+ K+ L + LD + K Sbjct: 86 IWVSTFHAMCARILRREAAKVGYSSNFTIIDQGEQATLM----KNILKELNLDGKQFNYK 141 Query: 191 AFYEILEISNDED 203 F +++ + ++ Sbjct: 142 DFLYVIDDAKNKG 154 >gi|317121134|ref|YP_004101137.1| ATP-dependent DNA helicase PcrA [Thermaerobacter marianensis DSM 12885] gi|315591114|gb|ADU50410.1| ATP-dependent DNA helicase PcrA [Thermaerobacter marianensis DSM 12885] Length = 791 Score = 139 bits (350), Expect = 4e-31, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 60/162 (37%), Gaps = 39/162 (24%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 DL++ Q A + P V A AGSGKT +L +RV LL P +L +T T Sbjct: 3 DLLADLNPAQREAVTHPGGPVLVLAGAGSGKTRVLTRRVAFLLEQGVAPHQILAITFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ + + + Sbjct: 63 AAREMRERVEQLVGTGAR--------------------------------------DMWI 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T HA C I+++ +F I DE+ + ++ + K Sbjct: 85 GTFHASCVRILRRDGYRIGYDRNFIILDEDDRRSVLRDVLKE 126 >gi|288942739|ref|YP_003444979.1| UvrD/REP helicase [Allochromatium vinosum DSM 180] gi|288898111|gb|ADC63947.1| UvrD/REP helicase [Allochromatium vinosum DSM 180] Length = 732 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 71/198 (35%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 S +D ++ + E + A DP + A AGSGKT +LV R+ LL + P ++L Sbjct: 2 NASFLLDSLNPAQREAVSA-DPGH-LLILAGAGSGKTRVLVHRIAWLLQVQQVQPWSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ E++ Sbjct: 60 VTFTNKAAREMRSRLDEMLGTPV------------------------------------- 82 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GG+ V T H ++ +A + F I D + +LI K L + +D Sbjct: 83 -GGMWVGTFHGLAHRFLRAHWQDAGLPQQFQILDSDDQLRLI----KRLLKEMQIDEARW 137 Query: 188 LKKAFYEILEISNDEDIE 205 + + DE + Sbjct: 138 PPRQIQGFINRQKDEGLR 155 >gi|152998439|ref|YP_001343274.1| UvrD/REP helicase [Marinomonas sp. MWYL1] gi|150839363|gb|ABR73339.1| UvrD/REP helicase [Marinomonas sp. MWYL1] Length = 737 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 45/196 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 + S +D ++ + E + A P +++ V A AGSGKT +LV R+ L+ A P +L+ Sbjct: 2 DVSFILDSLNDKQREAVAA--PLQNSLVLAGAGSGKTRVLVHRIAWLMHAYELSPYSLMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ +++ Sbjct: 60 VTFTNKAAREMQGRIEQLVGVP-------------------------------------- 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 P G+ V T H +++ +A + +F I D + +LI+ + + +D+ Sbjct: 82 PQGMWVGTFHGLAHRLLRAHWRDAGLKENFQIMDSDDQLRLIKRIMR----ELNIDDTRW 137 Query: 188 LKKAFYEILEISNDED 203 K + DE Sbjct: 138 PPKQVSWFINAQKDEG 153 >gi|187777525|ref|ZP_02993998.1| hypothetical protein CLOSPO_01116 [Clostridium sporogenes ATCC 15579] gi|187774453|gb|EDU38255.1| hypothetical protein CLOSPO_01116 [Clostridium sporogenes ATCC 15579] Length = 1279 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 52/219 (23%), Positives = 82/219 (37%), Gaps = 35/219 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T ++ + V+A AG+GKT +LVQR++ +L P LL +T T AAA Sbjct: 6 WTDEQRQAIFTKNCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + I+ K + P + K LL + T Sbjct: 66 AEMRERIGDAIS---------------KGLDEDPESKVLRKQLTLL-------NKSNIMT 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ I +F I DE + + +EA + NE+ F + Sbjct: 104 IHSFCLQVIKNNFHTIEIDPNFRICDETEGILMKQEAMDELFDELYEIENED----FINL 159 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +E L L+L F S + Sbjct: 160 VESYASRKDTRL------QEVVLELHRFAKSAPLPYDWL 192 >gi|254483191|ref|ZP_05096424.1| UvrD/REP helicase domain protein [marine gamma proteobacterium HTCC2148] gi|214036562|gb|EEB77236.1| UvrD/REP helicase domain protein [marine gamma proteobacterium HTCC2148] Length = 717 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 78/198 (39%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ + +++ + + + A +++ V A AGSGKT +LV R+ L+ P ++L Sbjct: 2 DVSDILSPLNEAQRDAVAAE--SQNMLVLAGAGSGKTRVLVHRIAWLIRAEEFSPWSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM +R+ E++ SH Sbjct: 60 VTFTNKAAKEMRNRIEEMLQIPSH------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ V T H +++ EA + +F I D + +L++ + + LD + Sbjct: 84 --GMWVGTFHGLAHRLLKAHWKEAGLPQNFQILDSDDQLRLVKRVCR----EMELDESRW 137 Query: 188 LKKAFYEILEISNDEDIE 205 K + DE + Sbjct: 138 PPKQAMWYINSQKDEGLR 155 >gi|256831910|ref|YP_003160637.1| ATP-dependent DNA helicase PcrA [Jonesia denitrificans DSM 20603] gi|256685441|gb|ACV08334.1| ATP-dependent DNA helicase PcrA [Jonesia denitrificans DSM 20603] Length = 833 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 80/225 (35%), Gaps = 52/225 (23%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63 ++F + ++ + L +Q + A AGSGKT +L R+ LL A PS Sbjct: 39 SAFVDDAQAL-LTGLNPQQQAAVEHAGSPLLIVAGAGSGKTRVLTHRIAWLLATGRAWPS 97 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L +T T AAAEM RV++I+ + Sbjct: 98 EILAITFTNKAAAEMRERVIQIVGPSAQ-------------------------------- 125 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST------- 176 + V T H+ C I++ + S F+I D S++L+ + Sbjct: 126 ------RMWVSTFHSTCVRILRAHASALGLKSTFSIYDSADSQRLLGLVVRELELDPKRF 179 Query: 177 ----LASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTA 217 +A + +EL ++ ++ D E +I I Sbjct: 180 TPKGVAQRISGLKDELMTPADHLVRAGSN-DYEVMIGRIFERYQQ 223 >gi|194290339|ref|YP_002006246.1| DNA-dependent atpase i and helicase ii [Cupriavidus taiwanensis LMG 19424] gi|193224174|emb|CAQ70183.1| DNA-dependent ATPase I and helicase II [Cupriavidus taiwanensis LMG 19424] Length = 782 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 72/193 (37%), Gaps = 44/193 (22%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ +EQL A P A + A AGSGKT +L R+ L+ P+ +L +T T Sbjct: 3 DLLANLNAEQLAAVTLPDEPALILAGAGSGKTRVLTTRIAWLIQNGHVSPAGILAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ G+ Sbjct: 63 KAAKEMQTRLSSMLPI--------------------------------------NTRGMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + FAI D + A K L S+ +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHFRDAGLPQTFAILDSQDQLS----ALKRLLKSLNVDDEKYPAKNL 140 Query: 193 YEILEISNDEDIE 205 + + ++ + Sbjct: 141 QYFINNAKEQGLR 153 >gi|254281652|ref|ZP_04956620.1| UvrD/REP helicase [gamma proteobacterium NOR51-B] gi|219677855|gb|EED34204.1| UvrD/REP helicase [gamma proteobacterium NOR51-B] Length = 1113 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 51/203 (25%), Positives = 90/203 (44%), Gaps = 9/203 (4%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + Q EQ A DP RS V+A AGSGKT +L QR + L+ A +L LT T+ AA Sbjct: 1 MSDQLIREQ--AIDPDRSVCVTAPAGSGKTALLTQRFMALMPRVAKLEQILALTFTRKAA 58 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ ++ D + + Q ++ + + A + ++ G ++T Sbjct: 59 AEMRARI---LSELDAARDNRPVNDDFERQSRQLASTALDHATSMGWSL--QADGFNIRT 113 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC + + P+ + AD ++ L EEA ++ S+ N A + Sbjct: 114 IDSFCAYLTRHMPILSESGGLMQTAD--DARPLYEEAVRALFQSVGEPNPTGEALAALLL 171 Query: 196 LEISNDEDIETLISDIISNRTAL 218 +N + ++ +++ R Sbjct: 172 AYHNNWARLSEMLVELLGRRGDW 194 >gi|255326665|ref|ZP_05367741.1| ATP-dependent DNA helicase PcrA [Rothia mucilaginosa ATCC 25296] gi|255295882|gb|EET75223.1| ATP-dependent DNA helicase PcrA [Rothia mucilaginosa ATCC 25296] Length = 990 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 + ++ + A AGSGKT +L R+ LL + A P +L +T T AAAEM Sbjct: 151 NERQEEAVLHSGSPLLIVAGAGSGKTRVLTHRIAYLLATHRATPGQILAITFTNKAAAEM 210 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ ++ +A+H + + T H+ Sbjct: 211 RERIEALVG---------------------------PRAKH-----------MWISTFHS 232 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 FC ++++ + S F I D S++L+ K Sbjct: 233 FCVRVLRREAAALGLKSTFTIYDSTDSQRLLSLIIKEL 270 >gi|260914154|ref|ZP_05920627.1| ATP-dependent helicase PcrA [Pasteurella dagmatis ATCC 43325] gi|260631787|gb|EEX49965.1| ATP-dependent helicase PcrA [Pasteurella dagmatis ATCC 43325] Length = 725 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 37/158 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + + + A P + V A AGSGKT +L R+ L+ + +++ Sbjct: 2 DISELLDGLNDKQRKAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIAVEGISEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + S ++ L Sbjct: 60 VTFTNKAAAEMRHRIESTLANHS--------------------------SQRLF------ 87 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G+ V T H+ +++ L+AN+ F I D + Sbjct: 88 --GMWVGTFHSIAHRLLRAHHLDANLPQDFQILDSDDQ 123 >gi|113868708|ref|YP_727197.1| superfamily I DNA/RNA helicase [Ralstonia eutropha H16] gi|113527484|emb|CAJ93829.1| Superfamily I DNA and RNA helicase [Ralstonia eutropha H16] Length = 782 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 72/193 (37%), Gaps = 44/193 (22%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ +EQL A P A + A AGSGKT +L R+ L+ P+ +L +T T Sbjct: 3 DLLANLNAEQLAAVTLPDEPALILAGAGSGKTRVLTTRIAWLIQNGRVSPAGILAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ G+ Sbjct: 63 KAAKEMQTRLSSMLPI--------------------------------------NTRGMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + FAI D + A K L S+ +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHFRDAGLPQTFAILDSQDQLS----ALKRLLKSLNVDDEKYPAKNL 140 Query: 193 YEILEISNDEDIE 205 + + ++ + Sbjct: 141 QYFINNAKEQGLR 153 >gi|319943193|ref|ZP_08017476.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Lautropia mirabilis ATCC 51599] gi|319743735|gb|EFV96139.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Lautropia mirabilis ATCC 51599] Length = 808 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 79/225 (35%), Gaps = 45/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ +Q A P+ A + A AGSGKT +L R+ L+ P+ ++ +T T Sbjct: 3 DLLAHLNPQQRAAVTVPSGHALILAGAGSGKTRVLTTRIAWLVGTGQCSPAEIMAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ P + Sbjct: 63 KAAREMMARLSTMLVGA-------------------------------------NPRAMW 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T H C +++ +A + + F I D A K L + +D+ + KA Sbjct: 86 VGTFHGLCNRLLRAHHRDAGLPASFQIMDSADQLG----AIKRLLRGLNVDDQQFQPKAV 141 Query: 193 YEILEISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIE 235 + S + + + +R +L + R +++ Sbjct: 142 QHFINGSKEAGLRAADVSGHDSHSRRLAELYGAYDEQCQREGVVD 186 >gi|90414255|ref|ZP_01222235.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum 3TCK] gi|90324702|gb|EAS41243.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum 3TCK] Length = 724 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 48/231 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A +++ Sbjct: 2 DVSLLLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLVHRIAWLMQIEQASSYSIMS 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM R+ E++ S Sbjct: 60 VTFTNKAAAEMRGRINELMQGSS------------------------------------- 82 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ T H C +++ L+A + F I D + +L+ + + + LD Sbjct: 83 -AGMWNGTFHGLCHRMLRAHYLDARLPDDFNILDSDDQMRLL----RRLIKAQNLDEKHW 137 Query: 188 LKKAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235 + + DE + D ++ +T L++ + R +++ Sbjct: 138 PARQAAWYINGKKDEGLRPANIDAFNDPVEKTWLRIYTAYQEACDRAGLVD 188 >gi|291525748|emb|CBK91335.1| Superfamily I DNA and RNA helicases [Eubacterium rectale DSM 17629] Length = 763 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 90/229 (39%), Gaps = 52/229 (22%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +D++++ + E +L +D + A AGSGKT +L R L+ +P ++ +T T Sbjct: 3 LDMLNEQQREAVLTTD--GPLLILAGAGSGKTRVLTYRTAYLIDECGVNPYNIMAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +++ S + Sbjct: 61 KAAGEMRERIDDMVGYGSE--------------------------------------SIW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T H+ C I++++ ++F I D + K L+++ K + +D +K F Sbjct: 83 VSTFHSTCVRILRRYIDRLGYDTNFTIYDADDQKALMKDICKR----LEIDTKMYKEKMF 138 Query: 193 YEILEISNDEDIE------TLISDIISNRTALKLIFFFFSYLWRRKIIE 235 ++ + DE I+ D + + AL + + + L + ++ Sbjct: 139 LNVISSAKDEMIDPIEFENRFTGDFVKRKQAL-VYKEYQNALKQNNALD 186 >gi|227500430|ref|ZP_03930492.1| ATP-dependent exoDNAse beta subunit [Anaerococcus tetradius ATCC 35098] gi|227217493|gb|EEI82812.1| ATP-dependent exoDNAse beta subunit [Anaerococcus tetradius ATCC 35098] Length = 1121 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 88/223 (39%), Gaps = 32/223 (14%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 + TK ++L + ++ VSA AGSGKT +LV R+++L+ + + + +T T A+ Sbjct: 4 MHFTKDQELAINARGKNIIVSAAAGSGKTSVLVTRIIKLITEDKEDIAKFIIVTFTNKAS 63 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + + D LS + ++ +++T Sbjct: 64 VEMKDRIRKALEDKLRDKDADLS---------------------FIKEQMKNLKHAQIKT 102 Query: 136 IHAFCEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 +H+FC ++++ F +++ +F + + S L EA + E + + Sbjct: 103 LHSFCSDMLRENFYYFDDLSPNFKVISDNTSTILKAEAIDEVFDMKYENMTETFENFLHS 162 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 ND + ++ LK S ++++ Sbjct: 163 FARTKNDSGAKDIV---------LKTYDKIMSQTRPLAWLDEA 196 >gi|118590879|ref|ZP_01548279.1| DNA helicase II protein [Stappia aggregata IAM 12614] gi|118436401|gb|EAV43042.1| DNA helicase II protein [Stappia aggregata IAM 12614] Length = 812 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 43/192 (22%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D ++ EQ LA + T V A AG+GKT +L R+ +L A PS +L +T T Sbjct: 47 DYLTGLNPEQRLAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGLARPSEILAVTFTN 106 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ + G Sbjct: 107 KAAREMKERIAGFVGG-------------------------------------NVEGMAW 129 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ C I+++ + S F+I D + +LI++ + + LD+ KAF Sbjct: 130 LGTFHSICVKILRKHAELVGLKSSFSILDTDDQIRLIKQ----IIQAEGLDDKRWTAKAF 185 Query: 193 YEILEISNDEDI 204 IL+ + + Sbjct: 186 AGILDGWKNRAL 197 >gi|152981250|ref|YP_001352009.1| DNA helicase II / ATP-dependent DNA helicase [Janthinobacterium sp. Marseille] gi|151281327|gb|ABR89737.1| DNA helicase II / ATP-dependent DNA helicase [Janthinobacterium sp. Marseille] Length = 760 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 81/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P + A + A AGSGKT +L R+ L+ P+ +L +T T Sbjct: 3 NLLHNLNPEQLAAVTLPAQPALILAGAGSGKTRVLTTRIAWLIQTGQVSPAGILAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ G+ Sbjct: 63 KAAKEMMTRLSAMMPI--------------------------------------NTRGMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D + +I K L + +D+ + + Sbjct: 85 IGTFHGLCNRLLRAHYRDAALPQTFQILDSQDQLSMI----KRLLKANNIDDEKYPPRNL 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + D+ + + NR ++L + R +++ Sbjct: 141 MYFINGAKDQGLRASAVEAFDDYNRKMVELYEIYDQQCQREGVVD 185 >gi|167751208|ref|ZP_02423335.1| hypothetical protein EUBSIR_02194 [Eubacterium siraeum DSM 15702] gi|167655715|gb|EDR99844.1| hypothetical protein EUBSIR_02194 [Eubacterium siraeum DSM 15702] Length = 1235 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 94/225 (41%), Gaps = 32/225 (14%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKA 73 + T ++ + A VSA AGSGKT +L QRV+RL+ N PS ++ +T T+ Sbjct: 1 MKYTDAQIKAINQGRNPAIVSAGAGSGKTAVLTQRVVRLICDKNENIDPSKIVVVTFTEK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA E+ R+ + L + + + R L ++ Sbjct: 61 AANELKARL------------DALMRQRISEAVSSADVRFLRNQRMKLRKA-------RI 101 Query: 134 QTIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 TI +FC +++++ L +I++ F++ DE +SK L E+ L + ++ + Sbjct: 102 STISSFCFSLLRENIDLVTDISAGFSLIDETRSKALKEDILSDVLEDFYANGDKADRDVI 161 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 E +D + +I L + ++ K +++S Sbjct: 162 VENYVAKDDRRLRDII---------LTVHEKAINHTEPEKWLDRS 197 >gi|255994221|ref|ZP_05427356.1| putative ATP-dependent exoDNAse beta subunit [Eubacterium saphenum ATCC 49989] gi|255993889|gb|EEU03978.1| putative ATP-dependent exoDNAse beta subunit [Eubacterium saphenum ATCC 49989] Length = 1289 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 25/217 (11%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + ++ VSA AGSGKT +L+QR+ L+ A +L T T AAA Sbjct: 1 MKWSDNQLKAIEGRGSDIIVSAAAGSGKTAVLIQRLKSLVTDDGASLDEVLVATFTNAAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AE+ R+ + +T + + E +Q K + T Sbjct: 61 AELKERLAKALTQEIEIVQDDEKREFLLVQRKNIET-------------------ASIGT 101 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H+F ++++F A I+ +F I +QS LI + TL ++ + E ++F Sbjct: 102 FHSFAIDLLREFNYRAGISKNFGIL-SQQSDALI---TRETLDAVFTEFFEAKDESFLAF 157 Query: 196 LE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231 L+ SND+ + + +II T L+ + ++ + L R Sbjct: 158 LDAYSNDKSDDDIKKNIIEVYTKLRALPYYDAILARE 194 >gi|329901071|ref|ZP_08272696.1| ATP-dependent DNA helicase UvrD/PcrA [Oxalobacteraceae bacterium IMCC9480] gi|327549259|gb|EGF33838.1| ATP-dependent DNA helicase UvrD/PcrA [Oxalobacteraceae bacterium IMCC9480] Length = 753 Score = 138 bits (348), Expect = 7e-31, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 86/225 (38%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +L+ EQL A P + A + A AGSGKT +L R+ L+ A P+ +L +T T Sbjct: 3 NLLHNLNPEQLAAVTLPAQHALILAGAGSGKTRVLTTRIAWLIQNGAVAPNGVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM+ R+ ++ + G+ Sbjct: 63 KAAKEMTLRLSAMMPISTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D +I K L ++ +D+ + + Sbjct: 85 IGTFHGLCNRLLRAHHRDAGLPQTFQILDSSDQLSMI----KRMLKALNVDDEKFPPRNL 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + D+ + D NR ++L ++ + R +++ Sbjct: 141 MYFINGAKDQGLRAKDVDASDDYNRRMVELYDYYDNQCQREGVVD 185 >gi|167036387|ref|YP_001671618.1| DNA-dependent helicase II [Pseudomonas putida GB-1] gi|166862875|gb|ABZ01283.1| UvrD/REP helicase [Pseudomonas putida GB-1] Length = 728 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 +++ + V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM Sbjct: 16 AQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQ 75 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ P G+ V T H Sbjct: 76 RIEQLLGI--------------------------------------NPAGMWVGTFHGLA 97 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + +F I D + ++LI K + + LD + + + Sbjct: 98 HRLLRAHWQEARLVQNFQILDSDDQQRLI----KRVMRELGLDEQKWPARQAQWFINGQK 153 Query: 201 DEDIE 205 DE + Sbjct: 154 DEGLR 158 >gi|26992028|ref|NP_747453.1| DNA-dependent helicase II [Pseudomonas putida KT2440] gi|24987163|gb|AAN70917.1|AE016735_10 DNA helicase II [Pseudomonas putida KT2440] Length = 728 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 +++ + V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM Sbjct: 16 AQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQ 75 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ P G+ V T H Sbjct: 76 RIEQLLGI--------------------------------------NPAGMWVGTFHGLA 97 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + +F I D + ++LI K + + LD + + + Sbjct: 98 HRLLRAHWQEARLVQNFQILDSDDQQRLI----KRVMRELGLDEQKWPARQAQWFINGQK 153 Query: 201 DEDIE 205 DE + Sbjct: 154 DEGLR 158 >gi|300858060|ref|YP_003783043.1| ATP-dependent DNA helicase II [Corynebacterium pseudotuberculosis FRC41] gi|300685514|gb|ADK28436.1| ATP-dependent DNA helicase II [Corynebacterium pseudotuberculosis FRC41] Length = 846 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 52/202 (25%), Positives = 82/202 (40%), Gaps = 53/202 (26%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL+ +Q A + + S + A AGSGKT +L +R+ L+ + P +L +T T Sbjct: 61 DLVQGLNPQQQQAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLMRIRGVQPGQILAITFTN 120 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV ++ + + Sbjct: 121 KAAAEMRERVAHLVGPIA--------------------------------------SRMW 142 Query: 133 VQTIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H+ C I+++ L A + S+F I D + SK+L LA I D N ++KK Sbjct: 143 VSTFHSTCVRILREQAQLVAGLNSNFTIYDSDDSKRL--------LAMISKDMNLDIKKF 194 Query: 192 FYEILEISNDEDIETLISDIIS 213 +L I L +++IS Sbjct: 195 TPRLL----GAGISNLKNELIS 212 >gi|256821408|ref|YP_003145371.1| UvrD/REP helicase [Kangiella koreensis DSM 16069] gi|256794947|gb|ACV25603.1| UvrD/REP helicase [Kangiella koreensis DSM 16069] Length = 726 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 76/198 (38%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + + I ++ + E + A P ++ V A AGSGKT +LV R+ L+ + + ++L Sbjct: 2 DATSIIQPLNDAQKEAVTA--PNKALLVLAGAGSGKTRVLVHRIAWLVQVEHISAHSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV +++ + Sbjct: 60 VTFTNKAAKEMLGRVEDMLAMPAR------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ + T H+ +++ + + F I D + ++I+ K + LD+NE Sbjct: 84 --GMWIGTFHSIAHRLLRAHYRDVGLPEGFQILDAQDQLRVIKRVMK----ELNLDDNEW 137 Query: 188 LKKAFYEILEISNDEDIE 205 K + D+ + Sbjct: 138 PPKQAQWFINAKKDDGLR 155 >gi|163786810|ref|ZP_02181258.1| hypothetical protein FBALC1_16532 [Flavobacteriales bacterium ALC-1] gi|159878670|gb|EDP72726.1| hypothetical protein FBALC1_16532 [Flavobacteriales bacterium ALC-1] Length = 1043 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 89/201 (44%), Gaps = 13/201 (6%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +A+AGSGKT L + L++L+A+ + +L +T T A EM R++ ++ ++S Sbjct: 10 NASAGSGKTFTLAKAYLKILVASKNYDQFKSVLAITFTNKAVGEMKERIINMLKSFSSEE 69 Query: 94 DEILSAEITKIQGKKPNKS---DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + + + + ++K++H+L I+ G + TI F +++ F + Sbjct: 70 SLTEPHPMFEAICDELDIEPKFLLNKSKHILKHIIHNYGAFDISTIDGFTHRVIRTFAHD 129 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE----- 205 N+ +F + E ++L+ EA S +A D + I + +D+ + Sbjct: 130 LNLPVNFEV--ELDQERLLNEAVDSLIAKAGSDKTLTSTLIDFAIEKADDDKTWDISYDF 187 Query: 206 TLISDIISNRTALKLIFFFFS 226 IS ++ N I + Sbjct: 188 NKISKLLVNENDFSAIEGLKN 208 >gi|119503960|ref|ZP_01626041.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2080] gi|119459963|gb|EAW41057.1| UvrD/REP helicase [marine gamma proteobacterium HTCC2080] Length = 1115 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 9/214 (4%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +I + A DPTRS V+A AGSGKT +L QR+L LL P +L +T T+ AA Sbjct: 1 MIDSDTQIRTTALDPTRSFCVTAPAGSGKTELLTQRILALLPTVDRPEQVLAMTFTRKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+L + + I S E Q + + ++ A ++ P ++T Sbjct: 61 AEMRERLLSKLDEARRRVEVIESYE---QQTRDLALAVLAHADERNWSL--DPEQFNLRT 115 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I + C + +Q P+ + + I EQ K L E A ++ D + + + Sbjct: 116 IDSLCADLTRQMPILSGLGGAVEIT--EQDKPLFELAVIELFDAVGSDA-QVGEDLRCLL 172 Query: 196 LEISNDED-IETLISDIISNRTALKLIFFFFSYL 228 L +ND D + L+ +++ R +Y Sbjct: 173 LHFNNDWDVLRGLLVALLARRGDWADTLGQHTYP 206 >gi|82701697|ref|YP_411263.1| UvrD/REP helicase [Nitrosospira multiformis ATCC 25196] gi|82409762|gb|ABB73871.1| ATP-dependent DNA helicase UvrD [Nitrosospira multiformis ATCC 25196] Length = 743 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 45/214 (21%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L++ EQL A P +SA V A AGSGKT +L R+ L+ + P +L +T T Sbjct: 4 LLTALNPEQLEAVTLPHQSALVLAGAGSGKTKVLTTRIAYLIQSGEVSPHGILAVTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ G+ + Sbjct: 64 AAKEMLTRIAAMLPI--------------------------------------NTRGMWI 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ +A + F I D +I K L ++ D+ + + Sbjct: 86 GTFHGLCNRLLRAHHQDAGLPQTFQILDSADQLAVI----KRILKNLGADDEKFPPRQVQ 141 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 + + +E + + + T K++ F+ SY Sbjct: 142 WFINNAKEEGLRASQVEAYDDYTR-KMVEFYASY 174 >gi|148550460|ref|YP_001270562.1| DNA-dependent helicase II [Pseudomonas putida F1] gi|148514518|gb|ABQ81378.1| ATP-dependent DNA helicase UvrD [Pseudomonas putida F1] gi|313496365|gb|ADR57731.1| UvrD [Pseudomonas putida BIRD-1] Length = 728 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 +++ + V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM Sbjct: 16 AQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQ 75 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ P G+ V T H Sbjct: 76 RIEQLLGI--------------------------------------NPAGMWVGTFHGLA 97 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + +F I D + ++LI K + + LD + + + Sbjct: 98 HRLLRAHWQEARLVQNFQILDSDDQQRLI----KRVMRELGLDEQKWPARQAQWFINGQK 153 Query: 201 DEDIE 205 DE + Sbjct: 154 DEGLR 158 >gi|241768156|ref|ZP_04765619.1| UvrD/REP helicase [Acidovorax delafieldii 2AN] gi|241360465|gb|EER57577.1| UvrD/REP helicase [Acidovorax delafieldii 2AN] Length = 208 Score = 138 bits (347), Expect = 8e-31, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 7/163 (4%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 +A DP RS V A AG+GKT +LV R+LR LL A P +L +T TK AA EM R+ E Sbjct: 21 AIACDPQRSVAVEACAGAGKTWMLVSRMLRALLDGAAPHEILAITFTKKAAGEMRQRLQE 80 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKA-RHLLITILETPGGLKVQTIHAFCEAI 143 + ++H + L+ E+ SD +A ++L +L + ++++T H++ A+ Sbjct: 81 WLEVFAHAPLDDLARELIARGISPERSSDKREALQNLYRKMLASGRPVQIRTFHSWFAAL 140 Query: 144 MQQFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIML 182 + PL + + F + +++ + + E L ++ Sbjct: 141 LGTAPLALLQAQGLPASFELLEDD--AEAVREVWAPFLQTVAT 181 >gi|254362319|ref|ZP_04978431.1| DNA helicase II [Mannheimia haemolytica PHL213] gi|153093899|gb|EDN74827.1| DNA helicase II [Mannheimia haemolytica PHL213] Length = 732 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 80/220 (36%), Gaps = 41/220 (18%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +L R+ L+ + N S +L Sbjct: 2 DFSLLLDGLNDKQREAVAA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++ Sbjct: 60 VTFTNKAAAEMRHRIEYTLSQSGD----------------------------------NR 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ V T H+ +++ L+A++ F I D E ++ K L +D Sbjct: 86 LFGMWVGTFHSIANRLLRSHYLDADLPQDFQIMDTEDQQR----LLKRLLKLHNIDEKHF 141 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 K + D+ D ++ KL+ + Y Sbjct: 142 PPKHVAWYINAQKDKGKRAKDIDHYNDPNEKKLVEIYQIY 181 >gi|261493261|ref|ZP_05989788.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311111|gb|EEY12287.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 734 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 37/157 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +L R+ L+ + N S +L Sbjct: 4 DFSLLLDGLNDKQREAVAA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 61 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++ + Sbjct: 62 VTFTNKAAAEMRHRIEYTLSQSGN----------------------------------NR 87 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164 G+ V T H+ +++ L+A++ F I D E Sbjct: 88 LFGMWVGTFHSIANRLLRSHYLDADLPQDFQIMDTED 124 >gi|307717800|ref|YP_003873332.1| hypothetical protein STHERM_c00830 [Spirochaeta thermophila DSM 6192] gi|306531525|gb|ADN01059.1| hypothetical protein STHERM_c00830 [Spirochaeta thermophila DSM 6192] Length = 1152 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 28/161 (17%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +Q A + ++A V A AGSGKT +L +R LRL+ PS +L LT T+ AAAEM Sbjct: 2 NLNEDQRRAVETEKTAVVIAGAGSGKTRVLTERYLRLVRNGVQPSRILALTFTRKAAAEM 61 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + I + S +LE + T+ + Sbjct: 62 HERISQGIRGLARSSHG----------------------------LLEDFENAHISTLDS 93 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 FC +++ L I F + + + L A L+ Sbjct: 94 FCALVLRPHALGFGIRPDFGMCAADDLEGLESRALSFLLSK 134 >gi|300712678|ref|YP_003738491.1| putative helicase [Halalkalicoccus jeotgali B3] gi|299126362|gb|ADJ16700.1| putative helicase [Halalkalicoccus jeotgali B3] Length = 1253 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 94/221 (42%), Gaps = 36/221 (16%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA--NAHPSTLL 66 + S T + T+ +Q LA D ++ ++A AG+GKT L +R +L P+ ++ Sbjct: 19 QASATKEFELTTEQQQALALD--QNIAITAGAGTGKTTTLTERYRHILTEYPELSPTQIV 76 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T+ A +EM ++ ++ D + SA + K D+ A Sbjct: 77 TITFTRDATSEMRDKIRGVV------DDALESASAETYDRWQRAKDDIEDAY-------- 122 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD--- 183 + TIH FC I++++ +E + F D ++ LI+ + LA I+ + Sbjct: 123 ------IHTIHGFCSRILEEYAVETGVHPDFETLDNGEAVTLIDRTVRDVLAYILDEATH 176 Query: 184 ---------NNEELKKAFYEILEISNDEDIETLISDIISNR 215 L + + + +D+ +L++ +++ R Sbjct: 177 LRAADAIDAQKATLTDDVERLARLYSRDDLVSLLAGLLNER 217 >gi|325273939|ref|ZP_08140102.1| DNA-dependent helicase II [Pseudomonas sp. TJI-51] gi|324100910|gb|EGB98593.1| DNA-dependent helicase II [Pseudomonas sp. TJI-51] Length = 728 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 +++ + V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM Sbjct: 16 AQRQAVAAALGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQ 75 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ P G+ V T H Sbjct: 76 RIEQLLGI--------------------------------------NPAGMWVGTFHGLA 97 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + +F I D + ++LI K + + LD + + + Sbjct: 98 HRLLRAHWQEARLVQNFQILDSDDQQRLI----KRVMRELGLDEQKWPARQAQWFINGQK 153 Query: 201 DEDIE 205 DE + Sbjct: 154 DEGLR 158 >gi|302205782|gb|ADL10124.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis C231] gi|308276017|gb|ADO25916.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis I19] Length = 846 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 52/202 (25%), Positives = 82/202 (40%), Gaps = 53/202 (26%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL+ +Q A + + S + A AGSGKT +L +R+ L+ + P +L +T T Sbjct: 61 DLVQGLNPQQQQAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLMRIRGVQPGQILAITFTN 120 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV ++ + + Sbjct: 121 KAAAEMRERVAHLVGPIA--------------------------------------SRMW 142 Query: 133 VQTIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H+ C I+++ L A + S+F I D + SK+L LA I D N ++KK Sbjct: 143 VSTFHSTCVRILREQAQLVAGLNSNFTIYDSDDSKRL--------LAMISKDMNLDIKKF 194 Query: 192 FYEILEISNDEDIETLISDIIS 213 +L I L +++IS Sbjct: 195 TPRLL----GAGISNLKNELIS 212 >gi|34541655|ref|NP_906134.1| UvrD/REP helicase domain-containing protein [Porphyromonas gingivalis W83] gi|34397973|gb|AAQ67033.1| UvrD/REP helicase domain protein [Porphyromonas gingivalis W83] Length = 1102 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 8/200 (4%) Query: 38 ANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKTH L LRL L + +T T A AEM R+LE + + + Sbjct: 12 ASAGSGKTHTLTGEYLRLALRTRGAFRYIQAVTFTNKATAEMKERILEELYSLAVGGSSP 71 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 + E+ + + + +A+ +L IL L+V+TI +F + +M+ F E + Sbjct: 72 FAEELMQELALTTEQLQV-RAQEVLTEILNDYSSLRVKTIDSFFQEVMRAFSHELGLPGG 130 Query: 157 FAIADEEQSKKLIEEAKKSTLASIML----DNNEELKKAFYEILEISNDEDIETLISDII 212 F I E + K ++E+A L S+ D +++ +++E +I I + Sbjct: 131 FRI--EMEQKAVLEQAVVRLLHSLGEKDTSDVENWIRRLAEDLIEEGRGHNIRREIVSLG 188 Query: 213 SNRTALKLIFFFFSYLWRRK 232 +L+ K Sbjct: 189 DELFKEQLLLLSEEGKLPTK 208 >gi|154483242|ref|ZP_02025690.1| hypothetical protein EUBVEN_00943 [Eubacterium ventriosum ATCC 27560] gi|149736050|gb|EDM51936.1| hypothetical protein EUBVEN_00943 [Eubacterium ventriosum ATCC 27560] Length = 780 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 64/170 (37%), Gaps = 40/170 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +QL + A AGSGKT +L R+ L+ + P ++ +T T AA EM R Sbjct: 15 QQLAVYHTEGPLLILAGAGSGKTRVLTHRIAYLIEEKHVQPYNIMAITFTNKAAGEMRER 74 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V +I+ + + V T H+ C Sbjct: 75 VNKIVGFGAE--------------------------------------QVWVSTFHSACV 96 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEELKK 190 I++++ ++ F I D E KKL+++ K+ L M N L K Sbjct: 97 RILRRYIDRIGYSNDFTIYDTEDQKKLLKDVIKNLNLDPKMYKENAVLGK 146 >gi|326797393|ref|YP_004315213.1| UvrD/REP helicase [Marinomonas mediterranea MMB-1] gi|326548157|gb|ADZ93377.1| UvrD/REP helicase [Marinomonas mediterranea MMB-1] Length = 736 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 75/196 (38%), Gaps = 45/196 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 + S +D ++ + E + A P +++ V A AGSGKT +LV R+ L+ A P +L+ Sbjct: 2 DVSFILDALNDKQREAVAA--PLQNSLVLAGAGSGKTRVLVHRIAWLMHAYELSPYSLMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ +++ Sbjct: 60 VTFTNKAAREMQGRIEQLVGLP-------------------------------------- 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 P G+ V T H +++ +A + +F I D + +L++ + +D+ Sbjct: 82 PQGMWVGTFHGLAHRLLRAHWRDAGLKENFQIMDSDDQLRLVKRIMREF----NIDDTRW 137 Query: 188 LKKAFYEILEISNDED 203 K + DE Sbjct: 138 PPKQVAWFINGQKDEG 153 >gi|328944201|ref|ZP_08241665.1| hypothetical protein HMPREF0091_10890 [Atopobium vaginae DSM 15829] gi|327491120|gb|EGF22895.1| hypothetical protein HMPREF0091_10890 [Atopobium vaginae DSM 15829] Length = 1253 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 73/194 (37%), Gaps = 41/194 (21%) Query: 2 IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61 + + + +D ++ ++ + +V A AGSGKT L +RVL L + Sbjct: 6 MKTSGVLTDEKILDGLND--QQKQIVKTLASPLFVEAGAGSGKTFTLTKRVLWALTKGSG 63 Query: 62 P---------STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKS 112 P S +L +T T AAA E+ R+ + Sbjct: 64 PNGTAFLDDVSQVLIITFTHAAAHEIKERIRSSL-------------------------- 97 Query: 113 DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 + H+ LE + TIH+ C I++ + L+ I F+IA E + KL+ A Sbjct: 98 ---REAHMPQQALEV-DNAWISTIHSMCSRILKTYALDLGIDPQFSIASENDTVKLMRRA 153 Query: 173 KKSTLASIMLDNNE 186 + L+ E Sbjct: 154 VQDVLSDYYHKRFE 167 >gi|170759836|ref|YP_001785776.1| recombination helicase AddA [Clostridium botulinum A3 str. Loch Maree] gi|251764515|sp|B1KUZ8|ADDA_CLOBM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|169406825|gb|ACA55236.1| ATP-dependent nuclease subunit A [Clostridium botulinum A3 str. Loch Maree] Length = 1279 Score = 138 bits (347), Expect = 9e-31, Method: Composition-based stats. Identities = 52/219 (23%), Positives = 83/219 (37%), Gaps = 35/219 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T ++ + V+A AG+GKT +LVQR++ +L P LL +T T AAA Sbjct: 6 WTDEQRQAVFTKNCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + I+ K + P + K LL + T Sbjct: 66 AEMRERIGDAIS---------------KGLDENPESKALRKQLTLL-------NKSNIMT 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC I++ I +F I DE + + +EA + N++ F + Sbjct: 104 IHSFCLQIIKNNFHTIEIDPNFRICDETEGILMKQEAMDELFDELYEIENKD----FINL 159 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 +E L L+L F S + + Sbjct: 160 VESYASRKDTRL------QEVVLELHRFAKSAPFPYDWL 192 >gi|308234385|ref|ZP_07665122.1| UvrD/REP helicase [Atopobium vaginae DSM 15829] Length = 1248 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 73/194 (37%), Gaps = 41/194 (21%) Query: 2 IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61 + + + +D ++ ++ + +V A AGSGKT L +RVL L + Sbjct: 1 MKTSGVLTDEKILDGLND--QQKQIVKTLASPLFVEAGAGSGKTFTLTKRVLWALTKGSG 58 Query: 62 P---------STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKS 112 P S +L +T T AAA E+ R+ + Sbjct: 59 PNGTAFLDDVSQVLIITFTHAAAHEIKERIRSSL-------------------------- 92 Query: 113 DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 + H+ LE + TIH+ C I++ + L+ I F+IA E + KL+ A Sbjct: 93 ---REAHMPQQALEV-DNAWISTIHSMCSRILKTYALDLGIDPQFSIASENDTVKLMRRA 148 Query: 173 KKSTLASIMLDNNE 186 + L+ E Sbjct: 149 VQDVLSDYYHKRFE 162 >gi|110835551|ref|YP_694410.1| DNA helicase II [Alcanivorax borkumensis SK2] gi|110648662|emb|CAL18138.1| DNA helicase II [Alcanivorax borkumensis SK2] Length = 720 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 45/195 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 ID ++ + + + A D + V A AGSGKT +LV R+ + A P +L +T T Sbjct: 7 LIDGLNPAQRDAVAADD--QHLLVLAGAGSGKTRVLVHRIAWQIATEQASPFGILAVTFT 64 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM R+ +++ + G+ Sbjct: 65 NKAAAEMRGRIEQLLDM--------------------------------------SADGM 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H +++ EA + F I D + +LI+ K + LD + Sbjct: 87 WVGTFHGIAHRLLRAHWQEAGLPQGFQIIDADDQIRLIKRVSK----ELGLDEQRWPARQ 142 Query: 192 FYEILEISNDEDIET 206 + DE + Sbjct: 143 ATWFINSQKDEGLRA 157 >gi|326790761|ref|YP_004308582.1| recombination helicase AddA [Clostridium lentocellum DSM 5427] gi|326541525|gb|ADZ83384.1| recombination helicase AddA [Clostridium lentocellum DSM 5427] Length = 1251 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 89/227 (39%), Gaps = 27/227 (11%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-----AHPSTLLCLTHT 71 ++ T ++Q + VSA AGSGKT +L +RV++ ++ + L +T T Sbjct: 1 MAWTPAQQAAIDQREANILVSAAAGSGKTAVLTERVMKRIIGSEQEVPIEIDRFLIVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAA EM R+L+ ++ + + E L+ E K + + L+ Sbjct: 61 SAAAGEMKERILQKLSDYMNGLQENLNEENLKKI------DYIERQMALVPQA------- 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + TIH+FC ++ + +I + + + + + E L + D + Sbjct: 108 SISTIHSFCLKTIRAYFNRLDIDPNIKVGTQAELDVMKSELLDELLEECLEDGASDFMAL 167 Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 ++ + ++ LI D+ + F S + + + Sbjct: 168 AEVYGDVQGLDSLKNLILDVST---------FSKSTPFPEVWLHNQV 205 >gi|313201054|ref|YP_004039712.1| uvrd/rep helicase [Methylovorus sp. MP688] gi|312440370|gb|ADQ84476.1| UvrD/REP helicase [Methylovorus sp. MP688] Length = 1141 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 16/228 (7%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L++Q + A + S V A AG+GKT +L QR L+LL P ++ +T T AA Sbjct: 16 LLAQDDESRRRALE-LESFIVEAPAGAGKTELLTQRYLKLLTTVREPEEIIAITFTNKAA 74 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+L+ + + K + + + A +LE P L++ T Sbjct: 75 AEMRARILDSLLMAGSGERPP---QPHKQKTFALGQDALQHAAERGWHLLENPARLRIFT 131 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I + + +Q PL + + A+ E + + A + TL D + A + Sbjct: 132 IDSLSSHLARQMPLMSRFGAQPAVT--EDASAYYQLAAERTL-----DLADGSSDAVTQA 184 Query: 196 LEISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 L +++ + L++D+++ R + R + E +L + Sbjct: 185 LRYVDNDSLRLTQLLADMLAKRDQWLPYA---NRTDTRDLAEAALQHL 229 >gi|296532805|ref|ZP_06895482.1| excision endonuclease subunit UvrD [Roseomonas cervicalis ATCC 49957] gi|296266866|gb|EFH12814.1| excision endonuclease subunit UvrD [Roseomonas cervicalis ATCC 49957] Length = 745 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 44/192 (22%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTK 72 D +++ EQ A + V A AG+GKT +L R L+ A P+ +L +T T Sbjct: 16 DYLARLNPEQRAAVETVDGPLLVLAGAGTGKTRVLTTRFAHILMTRRAFPNQVLAVTFTN 75 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV I+ GL Sbjct: 76 KAAREMRERVSAILG--------------------------------------HPAEGLW 97 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T HA C ++++ +TS+F+I D + +L+++ + + +D +A Sbjct: 98 LGTFHALCARMLRRHAELVGLTSNFSILDTDDQMRLLKQ----VMEASGVDMKRWPPQAL 153 Query: 193 YEILEISNDEDI 204 I++ D + Sbjct: 154 MGIIQRWKDRGL 165 >gi|188995913|ref|YP_001930165.1| ATP-dependent helicase [Porphyromonas gingivalis ATCC 33277] gi|188595593|dbj|BAG34568.1| ATP-dependent helicase [Porphyromonas gingivalis ATCC 33277] Length = 1074 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 8/200 (4%) Query: 38 ANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKTH L LRL L + +T T A AEM R+LE + + Sbjct: 12 ASAGSGKTHTLTGEYLRLALRTRGAFRYIQAVTFTNKATAEMKERILEELYGLAVGGSSP 71 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 + E+ + + + +A+ +L IL L+V+TI +F + +M+ F E + Sbjct: 72 FAEELMQELALTTEQLQV-RAQEVLTEILNDYSSLRVKTIDSFFQEVMRAFSHELGLPGG 130 Query: 157 FAIADEEQSKKLIEEAKKSTLASIML----DNNEELKKAFYEILEISNDEDIETLISDII 212 F I E + K ++E+A L S+ D +++ +++E +I I + Sbjct: 131 FRI--EMEQKAVLEQAVVRLLHSLGEKDTSDVENWIRRLAEDLIEEGRGHNIRREIVSLG 188 Query: 213 SNRTALKLIFFFFSYLWRRK 232 +L+ K Sbjct: 189 DELFKEQLLLLSEEGKLPTK 208 >gi|187929519|ref|YP_001900006.1| UvrD/REP helicase [Ralstonia pickettii 12J] gi|309781705|ref|ZP_07676438.1| DNA helicase II [Ralstonia sp. 5_7_47FAA] gi|187726409|gb|ACD27574.1| UvrD/REP helicase [Ralstonia pickettii 12J] gi|308919346|gb|EFP65010.1| DNA helicase II [Ralstonia sp. 5_7_47FAA] Length = 786 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL++ EQ A P SA + A AGSGKT +L R+ L+ + PS +L +T T Sbjct: 3 DLLANLNPEQRAAITLPDESALILAGAGSGKTRVLTTRIAWLIQSARVSPSGVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM+ R+ ++ + Sbjct: 63 KAAKEMTARLQAMLPI--------------------------------------NTRAMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D + A K L S+ +D+ + K Sbjct: 85 IGTFHGLCNRLLRAHYRDAGLPQTFQILDTQDQLS----AVKRLLKSLNIDDEKFPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + +I + +R L + + R +++ Sbjct: 141 QYFINGAKEQGLRAGDLEIANEYDRRMADLYAAYDAQCQREGVVD 185 >gi|163857867|ref|YP_001632165.1| putative nuclease/helicase [Bordetella petrii DSM 12804] gi|163261595|emb|CAP43897.1| putative nuclease/helicase [Bordetella petrii] Length = 1152 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 4/144 (2%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 + + A DP S V A AGSGKT +L R+L LL P ++ +T T+ AA+EM R Sbjct: 12 AARARALDPASSFLVQAPAGSGKTELLTDRILALLATVNRPEEIVAITFTRKAASEMHAR 71 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 VL + S + + + ++ + + L +L+ P L ++TI +FC Sbjct: 72 VLGKLRDGSGPMPATEHGQ----RSWQLARAALERNDALGWKLLQHPARLSIRTIDSFCA 127 Query: 142 AIMQQFPLEANITSHFAIADEEQS 165 +++ P + + IAD+ Q+ Sbjct: 128 GLVRGMPWLSELGGMPDIADDAQA 151 >gi|261496496|ref|ZP_05992876.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307699|gb|EEY09022.1| DNA helicase II [Mannheimia haemolytica serotype A2 str. OVINE] Length = 732 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 37/157 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +L R+ L+ + N S +L Sbjct: 2 DFSLLLDGLNDKQREAVAA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++ Sbjct: 60 VTFTNKAAAEMRHRIEYTLSQSGD----------------------------------NR 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164 G+ V T H+ +++ L+A++ F I D E Sbjct: 86 LFGMWVGTFHSIANRLLRSHYLDADLPQDFQIMDTED 122 >gi|170724287|ref|YP_001751975.1| DNA-dependent helicase II [Pseudomonas putida W619] gi|169762290|gb|ACA75606.1| UvrD/REP helicase [Pseudomonas putida W619] Length = 729 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 68/185 (36%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 +++ + V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM Sbjct: 16 AQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQ 75 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ P G+ V T H Sbjct: 76 RIEQLLGI--------------------------------------NPAGMWVGTFHGLA 97 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + +F I D + ++L K + + LD + + Sbjct: 98 HRLLRAHWQEARLVQNFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWFINGQK 153 Query: 201 DEDIE 205 DE + Sbjct: 154 DEGLR 158 >gi|300309775|ref|YP_003773867.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1] gi|300072560|gb|ADJ61959.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae SmR1] Length = 759 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 76/214 (35%), Gaps = 45/214 (21%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVL 83 + P +SA + A AGSGKT +L R+ L+ PS +L +T T AA EM+ R+ Sbjct: 14 AAVTLPAQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPSGILAVTFTNKAAKEMTARLS 73 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 ++ G+ + T H C + Sbjct: 74 GMLPI--------------------------------------NTRGMWIGTFHGLCNRL 95 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ +A + F I D + A K L + +D+ + + + + D+ Sbjct: 96 LRAHHKDAGLPQTFQILDTQDQLS----AIKRLLKQMNVDDEKYPPRNLMYFINSAKDQG 151 Query: 204 IETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + D NR ++L + R +++ Sbjct: 152 LRAKDVDAYDDYNRKFVELYELYDQQCQREGVVD 185 >gi|315187403|gb|EFU21159.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578] Length = 1149 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 81/217 (37%), Gaps = 40/217 (18%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +Q A + ++A V A AGSGKT +L +R LRL+ PS +L LT T+ AAAEM Sbjct: 2 NLNEDQRRAVETEKTAVVIAGAGSGKTRVLTERYLRLVKNGMQPSRILALTFTRKAAAEM 61 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ I + S +LE + T+ + Sbjct: 62 HERISRGIRGLARSSPG----------------------------LLEDFENAHISTLDS 93 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC +++ L I F + E + L A S L S KK + + Sbjct: 94 FCALVLRPHALGFGIRPDFGMCAAEDLEGLESRAL-SFLGS---------KKGLSGVSRL 143 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 + ++ +++D + + + + + E Sbjct: 144 IHSWGLDRVVNDFLCHYG--RNHAIVGATPDPEEWEE 178 >gi|326203370|ref|ZP_08193235.1| ATP-dependent DNA helicase PcrA [Clostridium papyrosolvens DSM 2782] gi|325986628|gb|EGD47459.1| ATP-dependent DNA helicase PcrA [Clostridium papyrosolvens DSM 2782] Length = 783 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 73/195 (37%), Gaps = 44/195 (22%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL+S +EQ A + A AGSGKT +L R+ L+ +PS +L +T T Sbjct: 1 MDLLSGLNAEQKEAVLHNEGPLLILAGAGSGKTRVLTHRIAYLIEQHGVYPSNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +I S + Sbjct: 61 NKAAREMKERIAGLIGDLS--------------------------------------NDM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H+ C I+++ + F I D + + +I+E L + L++ K+ Sbjct: 83 WVGTFHSICIRILRRDIEKLGYDRSFVIYDTQDQQVVIKEC----LKELNLNDKNFPPKS 138 Query: 192 FYEILEISNDEDIET 206 E + DE I+ Sbjct: 139 VLETIGKQKDELIDA 153 >gi|110596834|ref|ZP_01385124.1| UvrD/REP helicase [Chlorobium ferrooxidans DSM 13031] gi|110341521|gb|EAT59981.1| UvrD/REP helicase [Chlorobium ferrooxidans DSM 13031] Length = 740 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 59/164 (35%), Gaps = 39/164 (23%) Query: 15 DLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 D + ++ S V A AGSGKT ++ R+ L+ P+ +L LT T Sbjct: 3 DFLHDLNEVQRNAVSATEGPVMVLAGAGSGKTRVITYRIAYLISNEGVSPNNILALTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM HRV ++ A S GL Sbjct: 63 KAAGEMRHRVDTLLHAGSS-------------------------------------SGLW 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ +++ + +F+I D + SK LI +A Sbjct: 86 IGTFHSIFARLLRTYIHLIGYDRNFSIFDSDDSKSLIRQAMTEL 129 >gi|221194693|ref|ZP_03567750.1| UvrD/REP helicase [Atopobium rimae ATCC 49626] gi|221185597|gb|EEE17987.1| UvrD/REP helicase [Atopobium rimae ATCC 49626] Length = 1169 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 73/197 (37%), Gaps = 39/197 (19%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---------AHPS 63 T+D S T ++ + +V+A AGSGKT L +RV+ L Sbjct: 2 TLDFHSYTPGQKQAIQTLDKPLFVAAGAGSGKTFTLTKRVVWALSKGSGTDGGAYLDSLD 61 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 L +T T AA E+ RV + L Sbjct: 62 QALIITFTNEAAKEIKERVRSALEEEG-----------------------------LFDQ 92 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 L + TIH+ C I++ + I F + DE + +L++E+ + L+S+ Sbjct: 93 AL-NVDSAWISTIHSMCARILRSHAFDLGIDPDFIVLDEHRRNELLQESLEEVLSSLRET 151 Query: 184 NNEELKKAFYEILEISN 200 + + + +++ + ++ Sbjct: 152 DEYKGFFSVFDLKDTAS 168 >gi|94311565|ref|YP_584775.1| ATP-dependent DNA helicase UvrD [Cupriavidus metallidurans CH34] gi|93355417|gb|ABF09506.1| DNA-dependent ATPase I and helicase II [Cupriavidus metallidurans CH34] Length = 787 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 80/224 (35%), Gaps = 46/224 (20%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L++ +EQL A P A + A AGSGKT +L R+ L+ P+ +L +T T Sbjct: 4 LLANLNAEQLAAVTLPDEPALILAGAGSGKTRVLTTRIAWLIQNGRVSPAGILAVTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ G+ + Sbjct: 64 AAKEMQTRLSSMLPI--------------------------------------NTRGMWI 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ +A + FAI D + A K L + +D+ + K Sbjct: 86 GTFHGLCNRMLRAHFRDAGLPQTFAILDSQDQLS----AIKRLLKGLNVDDEKYPPKNLQ 141 Query: 194 EILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + + NR + L + R +++ Sbjct: 142 YFINNAKEQGLRPADVEANDDFNRRFVDLYAAYDEQCQREGVVD 185 >gi|91215425|ref|ZP_01252396.1| ATP-dependent helicase [Psychroflexus torquis ATCC 700755] gi|91186377|gb|EAS72749.1| ATP-dependent helicase [Psychroflexus torquis ATCC 700755] Length = 1045 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 13/190 (6%) Query: 37 SANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH-- 91 +A+AGSGKT L +R L LLL N+ +L +T T A EM R+LE + ++S Sbjct: 11 NASAGSGKTFKLAERYLNLLLSSPQNSSFQNILAITFTNKAVGEMKSRILEYLVSFSEGK 70 Query: 92 --LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 L D+ + I K G + K++ +L IL +V TI AF I++ F Sbjct: 71 TSLEDDPMLLLIHKSTGLTK-EQIQKKSKRVLEAILNNYAAFEVSTIDAFTHRIIRTFAK 129 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI-LEISNDEDIETLI 208 + ++ +F I E +K+++E A + + + EEL + E D+ + Sbjct: 130 DLGLSMNFDI--EMDTKQVLELAVERVVEKAGKE--EELTDVLIDFAAEKVEDDKSGNIT 185 Query: 209 SDIISNRTAL 218 DII+ + L Sbjct: 186 LDIINASSLL 195 >gi|307824211|ref|ZP_07654437.1| UvrD/REP helicase [Methylobacter tundripaludum SV96] gi|307734591|gb|EFO05442.1| UvrD/REP helicase [Methylobacter tundripaludum SV96] Length = 725 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 74/195 (37%), Gaps = 45/195 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 ID ++ + + + A P+++ V A AGSGKT +LV R+ + + ++L +T T Sbjct: 6 IIDPLNDAQRQAVTA--PSQAMLVLAGAGSGKTRVLVHRIAWQIQVLGVSAHSILAVTFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ E++ + + Sbjct: 64 NKAAKEMRGRIEELLNMSAQ--------------------------------------SM 85 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H ++++ +A + F + D +LI K LA++ LD ++ + Sbjct: 86 WIGTFHGVAHRLLRRHAKQAKLPETFQVMDSGDQLRLI----KRLLATLNLDADKWPPRQ 141 Query: 192 FYEILEISNDEDIET 206 + DE I Sbjct: 142 VQWYINAQKDEGIRA 156 >gi|251792813|ref|YP_003007539.1| DNA-dependent helicase II [Aggregatibacter aphrophilus NJ8700] gi|247534206|gb|ACS97452.1| DNA helicase II [Aggregatibacter aphrophilus NJ8700] Length = 724 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 38/158 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + +E +D ++ + E + A P + V A AGSGKT +L R+ L+ + +++ Sbjct: 2 DFAELLDGLNDKQREAVSA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVEGVSEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ +++ + + L Sbjct: 60 VTFTNKAAAEMRHRIESVLSDGN---------------------------QRLF------ 86 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G+ V T H+ +++ L+A++ F I D E Sbjct: 87 --GMWVGTFHSIAHRLLRAHHLDADLPQDFQILDSEDQ 122 >gi|113460642|ref|YP_718708.1| DNA-dependent helicase II [Haemophilus somnus 129PT] gi|112822685|gb|ABI24774.1| ATP-dependent DNA helicase UvrD [Haemophilus somnus 129PT] Length = 726 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 37/167 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLC 67 + SE ++ +++ + ++A P + V A AGSGKT +L R+ L P +++ Sbjct: 2 DISELLNDLNEKQRNAVVA--PLGNYLVLAGAGSGKTRVLTYRIAWLSAVEKIPESSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM HR+ + +SH + Sbjct: 60 VTFTNKAAMEMRHRIEATLARYSH----------------------------------QR 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 G+ + T H+ +++ +A + F I D E +L++ K Sbjct: 86 VFGMWIGTFHSIANRLLRSHYADAGLPQDFQILDSEDQLRLVKRLMK 132 >gi|289450290|ref|YP_003475636.1| putative ATP-dependent nuclease subunit A [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184837|gb|ADC91262.1| putative ATP-dependent nuclease subunit A [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 1448 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 107/239 (44%), Gaps = 45/239 (18%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAA 75 I+ T +Q + + P + VSA+AGSGKT +L +R+L LL + L+ +T T+AAA Sbjct: 5 INFTAEQQAVLTAPIGNILVSASAGSGKTAVLTERILEHLLSGQTELNRLVVVTFTEAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +M ++ I + KI P+++ + + + G + T Sbjct: 65 KQMKDKIRRKI--------------LAKIPSCCPDEAAILQDQMAY------MPGADIST 104 Query: 136 IHAFCEAIMQQFPLEAN-------ITSHFAIADEEQSKKLIEEAKKSTLASIMLD-NNEE 187 +HAFC+ I+++F + + F D ++ L+++A L I + ++ E Sbjct: 105 MHAFCKKIIKEFIYVLRDDKGNPLLDTEFKTLDGTEAALLLQQALDDVLNQIYVGIDHGE 164 Query: 188 LKK---------------AFYEILEISNDEDIETLISDIISNR-TALKLIFFFFSYLWR 230 L K AFY +L+ + + + +++SN T L+ + + +L + Sbjct: 165 LPKICWDFVGLSPAAAQMAFYRLLDSCDFNGDDAALRELLSNSLTKLRSLPHYGEFLLQ 223 >gi|322411491|gb|EFY02399.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 1210 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 27/224 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++V+R+L +L L T T AA E+ Sbjct: 30 TPEQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSVDRLFISTFTVKAATELR 89 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + + A + + L + L L+ + T+ AF Sbjct: 90 ERIEKKLYAQIAKTSDPL-------------------LKAYLTDQLQALSQADIGTMDAF 130 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ ++ I+ F I D+ + L+ + M ++ L KA + Sbjct: 131 AQKVLIRYGYSIGISPQFRIMQDKAEQDILMRDVFSKLFEEFMTQDDSSLFKALVK--NF 188 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 S + + +++ F S ++ +E++ A Sbjct: 189 SGNRKDASSFREVV-----YSCYAFSQSTENPKQWLEETFLKAA 227 >gi|325479866|gb|EGC82951.1| putative ATP-dependent nuclease subunit A [Anaerococcus prevotii ACS-065-V-Col13] Length = 1121 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 85/222 (38%), Gaps = 32/222 (14%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 + T ++ + ++ VSA AGSGKT +LV R++RL++ + S + +T T A+ Sbjct: 4 MEFTDKQKEAIATRDKNIIVSAAAGSGKTSVLVTRIIRLVIDDKKDISKFIIVTFTNKAS 63 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + S + ++ +V+T Sbjct: 64 VEMKDRIRAALEEELGKDGADYS---------------------FIKEQIKNLKYAQVKT 102 Query: 136 IHAFCEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 +H+FC ++++ F N++ F + + S L+ EA + + + Sbjct: 103 LHSFCADMLRENFYYFDNLSPSFKVISDNTSTILMAEAMDDVFSRAYEKMDTNFENFLKN 162 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 E ND+ + +I K S + + ++K Sbjct: 163 FSENKNDDKAKDIIY---------KTYDKIMSQVRPIEWLDK 195 >gi|238923773|ref|YP_002937289.1| ATP-dependent DNA helicase PcrA [Eubacterium rectale ATCC 33656] gi|238875448|gb|ACR75155.1| ATP-dependent DNA helicase PcrA [Eubacterium rectale ATCC 33656] Length = 763 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 90/229 (39%), Gaps = 52/229 (22%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +D++++ + E +L ++ + A AGSGKT +L R L+ +P ++ +T T Sbjct: 3 LDMLNEQQREAVLTTE--GPLLILAGAGSGKTRVLTYRTAYLIDECGVNPYNIMAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +++ S + Sbjct: 61 KAAGEMRERIDDMVGYGSE--------------------------------------SIW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T H+ C I++++ ++F I D + K L+++ K + +D +K F Sbjct: 83 VSTFHSTCVRILRRYIDRLGYDTNFTIYDADDQKALMKDICKR----LEIDTKMYKEKMF 138 Query: 193 YEILEISNDEDIE------TLISDIISNRTALKLIFFFFSYLWRRKIIE 235 ++ + DE I+ D + + AL + + + L + ++ Sbjct: 139 LNVISSAKDEMIDPIEFENRFTGDFVKRKQAL-VYKEYQNALKQNNALD 186 >gi|148244252|ref|YP_001218946.1| ATP-dependent DNA helicase [Candidatus Vesicomyosocius okutanii HA] gi|146326079|dbj|BAF61222.1| ATP-dependent DNA helicase [Candidatus Vesicomyosocius okutanii HA] Length = 1056 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 95/205 (46%), Gaps = 5/205 (2%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 + ++ A D ++S + A AGSGKT +L QR L+LL + P +++ +T TK A +E+ Sbjct: 2 NDQKQRRQALDVSQSFIIQAPAGSGKTELLTQRYLKLLSVSTSPESVIVMTFTKKAVSEL 61 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + RV+E + L+ + K + +++ L +L TP K+ TI + Sbjct: 62 TTRVIESL----ELAQGNRPKDPHKQIIYDLAFQVLERSKELDWQLLNTPERFKILTIDS 117 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I +P + + I+ + +A K TL +I ++ ++ L+ Sbjct: 118 LSSLITSHYPSKNQLVPKKVISQNWARYSMYSQAAKQTLLAINELEYQDSVESILLYLD- 176 Query: 199 SNDEDIETLISDIISNRTALKLIFF 223 +N + LI+D+++ R L + Sbjct: 177 NNIDRFYQLITDMLAKRDQWILKLY 201 >gi|291528122|emb|CBK93708.1| Superfamily I DNA and RNA helicases [Eubacterium rectale M104/1] Length = 763 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 90/229 (39%), Gaps = 52/229 (22%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +D++++ + E +L ++ + A AGSGKT +L R L+ +P ++ +T T Sbjct: 3 LDMLNEQQREAVLTTE--GPLLILAGAGSGKTRVLTYRTAYLIDECGVNPYNIMAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +++ S + Sbjct: 61 KAAGEMRERIDDMVGYGSE--------------------------------------SIW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T H+ C I++++ ++F I D + K L+++ K + +D +K F Sbjct: 83 VSTFHSTCVRILRRYIDRLGYDTNFTIYDADDQKALMKDICKR----LEIDTKMYKEKMF 138 Query: 193 YEILEISNDEDIE------TLISDIISNRTALKLIFFFFSYLWRRKIIE 235 ++ + DE I+ D + + AL + + + L + ++ Sbjct: 139 LNVISSAKDEMIDPIEFENRFTGDFVKRKQAL-VYKEYQNALKQNNALD 186 >gi|120610596|ref|YP_970274.1| ATP-dependent DNA helicase UvrD [Acidovorax citrulli AAC00-1] gi|120589060|gb|ABM32500.1| ATP-dependent DNA helicase UvrD [Acidovorax citrulli AAC00-1] Length = 818 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 74/224 (33%), Gaps = 46/224 (20%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L+ EQL A P A + A AGSGKT +L R+ LL A P ++L +T T Sbjct: 31 LLQNLNDEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQNGYASPGSILAVTFTNK 90 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM+ R+ ++ G+ + Sbjct: 91 AAKEMTARLSAMLPV--------------------------------------NVRGMWI 112 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ A + + F I D + A K +D K Sbjct: 113 GTFHGLCNRLLRAHHKSAGLPATFQILDTQDQLS----AVKRLCKQFNIDEERFPPKQMA 168 Query: 194 EILEISNDEDIETLISDI--ISNRTALKLIFFFFSYLWRRKIIE 235 + +E + D R ++L + R +++ Sbjct: 169 YFISGCKEEGLRPGDVDARDADGRKKVELYQLYEEQCQREGVVD 212 >gi|257092577|ref|YP_003166218.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045101|gb|ACV34289.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 724 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 79/225 (35%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ QL A P + A + A AGSGKT +L R+ L+ P +L +T T Sbjct: 3 DLLANLNPPQLAAVTLPAQHALILAGAGSGKTRVLTTRIAWLISTGQVGPQGILAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ G+ Sbjct: 63 KAAKEMQSRLAAMLPI--------------------------------------NTRGMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ EA + F I D A K L ++ +D+ + + Sbjct: 85 IGTFHGLCNRLLRAHHREAGLPETFQILDAADQLS----AIKRLLKNLNVDDEKFPPREL 140 Query: 193 YEILEISNDEDIETLISDIISNRT--ALKLIFFFFSYLWRRKIIE 235 + ++ I ++ + T ++L + R +++ Sbjct: 141 MHFINAHKEQGIRAAQAEAYDHYTSRRVELYTEYEGQCQREGVVD 185 >gi|256819097|ref|YP_003140376.1| UvrD/REP helicase [Capnocytophaga ochracea DSM 7271] gi|256580680|gb|ACU91815.1| UvrD/REP helicase [Capnocytophaga ochracea DSM 7271] Length = 1060 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 48/209 (22%), Positives = 98/209 (46%), Gaps = 20/209 (9%) Query: 28 SDPTRSAWV-SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVL 83 + P+ + + +A+AGSGKT+ LV+ LR++L + P LL +T T A EM +R++ Sbjct: 2 NTPSANYTIYNASAGSGKTYSLVKAYLRIILGSKQPDLFRQLLAITFTNKAVFEMKNRII 61 Query: 84 EIITAWSH----LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 E++ +S + E+ K P++ +++ L IL + TI F Sbjct: 62 ELLGVFSEDKMLTKPHAMFTELAKELN-LPDEELRTRSAKALEHILHNYAAFNISTIDGF 120 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-- 197 +++ F + ++ F + + SK L+E A + + N+ EL + + Sbjct: 121 NHQLIRHFSQDLHLNPFFEV--QLDSKALLERAVDNLMNQA--GNDPELTQLLIDFANEK 176 Query: 198 ISNDEDIETL-----ISDIISNRTALKLI 221 I +D+ +T ++++++N K + Sbjct: 177 IDDDKSWDTTKELLGVAEMLTNENHYKQL 205 >gi|223041651|ref|ZP_03611848.1| DNA helicase II [Actinobacillus minor 202] gi|223017515|gb|EEF15929.1| DNA helicase II [Actinobacillus minor 202] Length = 731 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 38/157 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +L R+ L+ + N S +L Sbjct: 2 DFSLLLDGLNDKQREAVSA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGIENIPESNILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM R+ + S Sbjct: 60 VTFTNKAAAEMRQRIEATLEQSS-----------------------------------HN 84 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164 G+ V T H+ +++ L+AN+ F I D E Sbjct: 85 MFGMWVGTFHSIANRLLRSHYLDANLPQDFQIMDTED 121 >gi|224826111|ref|ZP_03699214.1| UvrD/REP helicase [Lutiella nitroferrum 2002] gi|224601748|gb|EEG07928.1| UvrD/REP helicase [Lutiella nitroferrum 2002] Length = 715 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 84/228 (36%), Gaps = 52/228 (22%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL+S EQL A P +SA V A AGSGKT +L R+ L+ P+ +L +T T Sbjct: 3 DLLSGLNPEQLSAVTWPAKSALVLAGAGSGKTRVLTTRIAWLIQTGQVSPAGILAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 63 KAAREMQTRLGAMIPVNVKT--------------------------------------MW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C ++ +A + S F I D + A K L S+ + + + +A Sbjct: 85 IGTFHGLCNRFLRAHYRDAGLPSTFQILDSADQ----QAAIKRLLKSLDVSDEKFPPRAV 140 Query: 193 YEILEISNDEDIETLISDIISNRTA-----LKLIFFFFSYLWRRKIIE 235 + + + + +D +S A ++L + + R +++ Sbjct: 141 QNFINGNKESGVR---ADALSAHDAYTKKLIELYAAYDAQCQREGVVD 185 >gi|218132415|ref|ZP_03461219.1| hypothetical protein BACPEC_00274 [Bacteroides pectinophilus ATCC 43243] gi|217992753|gb|EEC58755.1| hypothetical protein BACPEC_00274 [Bacteroides pectinophilus ATCC 43243] Length = 766 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 43/184 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 + ++ + A AGSGKT +L R+ L+ +P +L +T T AA+EM Sbjct: 8 NEQQKQGVFTTEGPVLILAGAGSGKTRVLTHRIAYLIEEQGVNPWNILAITFTNKAASEM 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++++ + + V T H+ Sbjct: 68 RERVDKVVSMGAEH--------------------------------------VWVSTFHS 89 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C I++++ ++F I D + K ++ EA K + +D+ ++A + Sbjct: 90 MCVRILRRYIDRIGYDTNFTIYDSDDQKSIVREAIK----KLNIDSKTFKERAVLSAISA 145 Query: 199 SNDE 202 + D Sbjct: 146 AKDN 149 >gi|293376176|ref|ZP_06622421.1| ATP-dependent DNA helicase PcrA [Turicibacter sanguinis PC909] gi|292645163|gb|EFF63228.1| ATP-dependent DNA helicase PcrA [Turicibacter sanguinis PC909] Length = 741 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 44/222 (19%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L + ++ V A AGSGKT +L R+ L+ P +L +T T A Sbjct: 5 LQNMNPQQKQAIETTEGPLLVMAGAGSGKTRVLTHRIAYLMSEKLVAPYNILAITFTNKA 64 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++I + + Sbjct: 65 AREMKERVEKLIGDRGK--------------------------------------DVWIS 86 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY- 193 T H+ C I+++ +F I D+ +I K+ + + LD + K F Sbjct: 87 TFHSMCVRILRRDIDLIGYDLNFGILDDTDQLSVI----KTVMEELNLDPKRQSPKYFLN 142 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 +I N+ + N +++ + L++ ++ Sbjct: 143 QISNAKNELKTPRDLRKEFENEDVIRVYEKYQQVLFKNNRVD 184 >gi|325838896|ref|ZP_08166702.1| ATP-dependent DNA helicase PcrA [Turicibacter sp. HGF1] gi|325490637|gb|EGC92948.1| ATP-dependent DNA helicase PcrA [Turicibacter sp. HGF1] Length = 741 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 44/222 (19%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L + ++ V A AGSGKT +L R+ L+ P +L +T T A Sbjct: 5 LQNMNPQQKQAIETTEGPLLVMAGAGSGKTRVLTHRIAYLMSEKLVAPYNILAITFTNKA 64 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++I + + Sbjct: 65 AREMKERVEKLIGDRGK--------------------------------------DVWIS 86 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY- 193 T H+ C I+++ +F I D+ +I K+ + + LD + K F Sbjct: 87 TFHSMCVRILRRDIDLIGYDLNFGILDDTDQLSVI----KTVMEELNLDPKRQSPKYFLN 142 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 +I N+ + N +++ + L++ ++ Sbjct: 143 QISNAKNELKTPRDLRKEFENEDVIRVYEKYQQVLFKNNRVD 184 >gi|254470528|ref|ZP_05083932.1| UvrD/REP helicase domain protein [Pseudovibrio sp. JE062] gi|211960839|gb|EEA96035.1| UvrD/REP helicase domain protein [Pseudovibrio sp. JE062] Length = 812 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 42/191 (21%), Positives = 68/191 (35%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 + +EQ LA + V A AG+GKT +L R+ +L A P +L +T T Sbjct: 45 YMEGLNAEQRLAVETINGPVLVLAGAGTGKTRVLTTRIAHILATGHATPGQILAVTFTNK 104 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ I G + Sbjct: 105 AAREMKERIGAYIGE-------------------------------------NVEGMAWL 127 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T HA C I+++ + S F+I D + +LI++ + + LD K F Sbjct: 128 GTFHAICVKILRRHAELVGLKSSFSILDTDDQVRLIKQ----IIQAEGLDEKRWTAKTFA 183 Query: 194 EILEISNDEDI 204 +L+ + + Sbjct: 184 GLLDSWKNRGL 194 >gi|266624561|ref|ZP_06117496.1| ATP-dependent DNA helicase PcrA [Clostridium hathewayi DSM 13479] gi|288863577|gb|EFC95875.1| ATP-dependent DNA helicase PcrA [Clostridium hathewayi DSM 13479] Length = 805 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 45/189 (23%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 D +++ + E V A AGSGKT +L R+ L+ +P +L +T T Sbjct: 5 DTLNEVQRE--AVFHTEGPLLVLAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +I+ + + V Sbjct: 63 AAGEMRERVDKIVGFGAE--------------------------------------SIWV 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ C I+++ T++F I D + + L+ + L ++ LD +A Sbjct: 85 STFHSSCVRILRRHIESLGYTTNFTIYDSDDQRTLM----RQVLKTLELDPKLYKDRAML 140 Query: 194 EILEISNDE 202 ++ + +E Sbjct: 141 SLISTAKNE 149 >gi|261838828|gb|ACX98594.1| ATP-dependent nuclease [Helicobacter pylori 51] Length = 949 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 15/188 (7%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + + A+AGSGKT L R L LL A+PS +L LT TK A AEM R+L+ + Sbjct: 5 RQCMALKASAGSGKTFALSVRFLALLFKGANPSEILTLTFTKKATAEMKERILDYLKILQ 64 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSK--------ARHLLITILETPGGLKVQTIHAFCEA 142 + E + K + A+ + L +++ TI AF ++ Sbjct: 65 KENLENEKEKEKSQNILKELEEKYRLDPSFVQNSAQKIYQRFLN--AEIRISTIDAFFQS 122 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS--- 199 I+++F ++++F + E +K ++ S L+++ E+L + L Sbjct: 123 ILRKFCWFVGLSANFEV--NEDTKAHQQQLNASFLSALDNKQLEKLSVFITQCLSYDSYT 180 Query: 200 NDEDIETL 207 +D +E L Sbjct: 181 SDSILERL 188 >gi|17546954|ref|NP_520356.1| DNA helicase II protein [Ralstonia solanacearum GMI1000] gi|17429255|emb|CAD15942.1| probable dna helicase II protein [Ralstonia solanacearum GMI1000] Length = 829 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 84/230 (36%), Gaps = 46/230 (20%) Query: 10 HSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 +L++ EQ A P SA + A AGSGKT +L R+ L+ + PS +L Sbjct: 33 SPRMSELLAHLNPEQRAAVTLPDESALILAGAGSGKTRVLTTRIAWLIQSARVSPSGVLA 92 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM+ R+ ++ Sbjct: 93 VTFTNKAAKEMTARLSAMLPI--------------------------------------N 114 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ + T H C +++ +A + F I D + A K L S+ +D+ + Sbjct: 115 TRGMWIGTFHGLCNRLLRAHYRDAGLPQTFQILDTQDQLS----AVKRLLKSLNIDDEKF 170 Query: 188 LKKAFYEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 K + + ++ + +I + +R L + + R +++ Sbjct: 171 PPKNVQYFINGAKEQGLRAGDLEIANEFDRRMADLYAAYDAQCQREGVVD 220 >gi|322435329|ref|YP_004217541.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9] gi|321163056|gb|ADW68761.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9] Length = 1165 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 11/205 (5%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAA 75 T + Q A D +S V A AGSGKT +L+QR L+LL A+ P+ +L +T T+ A Sbjct: 15 DDTPARQQ-ALDIQQSWIVQAPAGSGKTGLLIQRFLKLLAADNVQDPAQVLAITFTRKAT 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RVL + + + + + ++ + K R +L++P L ++T Sbjct: 74 VEMRDRVLTQLQSAHTGTPPRNDFDRLTL---PLAQAVIEKDRRQGWNLLDSPHRLAIRT 130 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I + C I + P+ + A+ E S L EA + TL ++ ++ L A + Sbjct: 131 IDSVCVDIARSLPILSGAAG--ALTPTEDSAPLHAEAARRTLM-LLGSEDKTLSTAIETV 187 Query: 196 L--EISNDEDIETLISDIISNRTAL 218 L +N D+E LI+D++ R Sbjct: 188 LLHRDANLADVENLIADMLQVRDQW 212 >gi|291556731|emb|CBL33848.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Eubacterium siraeum V10Sc8a] Length = 1235 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 32/225 (14%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKA 73 + T ++ + A VSA AGSGKT +L QRV+RL+ N PS ++ +T T+ Sbjct: 1 MKYTDAQIKAINQGRNPAIVSAGAGSGKTAVLTQRVVRLICDKNENIDPSKIVVVTFTEK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA E+ R+ + L + + + R L ++ Sbjct: 61 AANELKARL------------DALMRQRISEAVSSADVRFLRNQRMKLRKA-------RI 101 Query: 134 QTIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 TI +FC +++++ L +I++ F++ DE +S L E+ L + ++ + Sbjct: 102 STISSFCFSLLRENIDLVTDISAGFSLIDETRSTALKEDILSDVLEDFYANGDKADRDVI 161 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 E +D + +I L + ++ K +++S Sbjct: 162 VENYVAKDDRRLRDII---------LTVHEKAINHTEPEKWLDRS 197 >gi|254503334|ref|ZP_05115485.1| UvrD/REP helicase domain protein [Labrenzia alexandrii DFL-11] gi|222439405|gb|EEE46084.1| UvrD/REP helicase domain protein [Labrenzia alexandrii DFL-11] Length = 822 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 43/192 (22%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D ++ EQ LA + T V A AG+GKT +L R+ +L + A P +L +T T Sbjct: 57 DYLTGLNPEQRLAVETTEGPLLVLAGAGTGKTRVLTTRIAHILASGLARPHEMLAVTFTN 116 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ + G Sbjct: 117 KAAREMKERIAVFVGG-------------------------------------NVEGMAW 139 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ C I+++ + S F+I D + +LI++ + + LD+ +AF Sbjct: 140 LGTFHSICVKILRKHAELVGLKSGFSILDTDDQIRLIKQ----IIQAEGLDDKRWTARAF 195 Query: 193 YEILEISNDEDI 204 +L+ + + Sbjct: 196 ATMLDGWKNRAL 207 >gi|257063577|ref|YP_003143249.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing [Slackia heliotrinireducens DSM 20476] gi|256791230|gb|ACV21900.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing [Slackia heliotrinireducens DSM 20476] Length = 1251 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 72/207 (34%), Gaps = 43/207 (20%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL----ANAHP-----STLLCLTH 70 T ++ R +SA AGSGKT L QR+ LL P ++ +T Sbjct: 7 TPPQRASVETLDRPLVISAGAGSGKTFTLTQRIAWALLPGSGEGGDPFVDSIDEVMAITF 66 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA E+ RV + A + + + Sbjct: 67 TTKAAQEIKARVKSTLRAEGMVEESLKV------------------------------DS 96 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + TIH C I+++ LE I F + +E + ++E A ++ L+ + E Sbjct: 97 AWISTIHGMCSRILREHALEIGIDPAFTVLNEADATDMMERAIQTVLSQADELMSPEGMD 156 Query: 191 AFYEILEIS----NDEDIETLISDIIS 213 + I E IE +I + + Sbjct: 157 GLFAEYSIRPNAFGGESIERMIRSLAN 183 >gi|305665916|ref|YP_003862203.1| ATP-dependent helicase [Maribacter sp. HTCC2170] gi|88710691|gb|EAR02923.1| ATP-dependent helicase [Maribacter sp. HTCC2170] Length = 1037 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 78/173 (45%), Gaps = 6/173 (3%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 +A+AGSGKTH L + L+++L++ + +L +T T A EM R+L + +S+ + Sbjct: 10 NASAGSGKTHTLTKEYLKIVLSSPNSYGQILAITFTNKAVNEMKERILSSLFEFSNTDEV 69 Query: 96 ILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 ++ + + + + KA+ L IL G + TI F I++ F + Sbjct: 70 GNASVLFSDLMSELDLEVDALRKKAKRTLKDILHNYGFFDISTIDKFTHRIIRTFAKDLK 129 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 I +F + + L+ EA L + D + + +I+ D+ + Sbjct: 130 IAQNFEVVLDTD--LLLSEAVDKLLEKVGQDKKMTKVLMDFALEKINEDKTWD 180 >gi|291547104|emb|CBL20212.1| Superfamily I DNA and RNA helicases [Ruminococcus sp. SR1/5] Length = 760 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 61/166 (36%), Gaps = 41/166 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 + +D ++ + E A + A AGSGKT +L R+ L+ +P +L +T Sbjct: 22 DALDTLNPMQRE--AAVHTEGPLLILAGAGSGKTRVLTHRIAYLMEEKGVNPWNILAITF 79 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA+EM RV +I + Sbjct: 80 TNKAASEMRERVNKIAGMGAE--------------------------------------S 101 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ S+F I D + K +++E + Sbjct: 102 VWVSTFHSACVRILRRHIEVLGFGSNFTIYDADDQKTVMKEIFRKF 147 >gi|313207052|ref|YP_004046229.1| uvrd/rep helicase [Riemerella anatipestifer DSM 15868] gi|312446368|gb|ADQ82723.1| UvrD/REP helicase [Riemerella anatipestifer DSM 15868] gi|315022554|gb|EFT35581.1| ATP-dependent helicase [Riemerella anatipestifer RA-YM] gi|325335511|gb|ADZ11785.1| UvrD/REP helicase [Riemerella anatipestifer RA-GD] Length = 1044 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 15/210 (7%) Query: 36 VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 +SA+AGSGKT+ LV R+L L L +L LT T AA EM R+L+ + A++ Sbjct: 7 ISASAGSGKTYTLVIRILSLCLRTPDEKAIRYILALTFTNKAANEMKERILQWLEAFTR- 65 Query: 93 SDEILSAEITKI------QGKKPNKSDMS-KARHLLITILETPGGLKVQTIHAFCEAIMQ 145 D + + E+ I QG K D+ +++ +L IL L + TI F +++ Sbjct: 66 EDYLQNNELKAIQSYLETQGIKLTIEDLHYRSKKVLDYILHHYSILNIGTIDKFNAKLVR 125 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 F E + +F + E ++ + EA L I D + +AF + + + + + Sbjct: 126 SFSYELGLAQNFNL--EINNEPYLIEAVDQLLDKIGEDPK--VSEAFMDFVNYNLENEER 181 Query: 206 TLISDIISNRTALKLIFFFFSYLWRRKIIE 235 ++ + +R + + L + + + Sbjct: 182 INVNKTLYDRAKTFVNDVHYEELRKNEAFD 211 >gi|134093547|ref|YP_001098622.1| DNA helicase II [Herminiimonas arsenicoxydans] gi|133737450|emb|CAL60493.1| DNA helicase II [Herminiimonas arsenicoxydans] Length = 762 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 80/225 (35%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P + A + A AGSGKT +L R+ L+ P+ +L +T T Sbjct: 3 NLLHNLNPEQLAAVTLPAQPALILAGAGSGKTRVLTTRIAWLIQTGQVSPAGILAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ G+ Sbjct: 63 KAAKEMMTRLSAMMPI--------------------------------------NTRGMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D + +I K L + +D+ + + Sbjct: 85 IGTFHGLCNRLLRAHYRDAALPQTFQILDSQDQLSMI----KRLLKANNIDDEKYPPRNL 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + D + + NR ++L + R +++ Sbjct: 141 MYFINGAKDNGLRAQDVEAHDDYNRKMVELYEIYDQQCQREGVVD 185 >gi|54310566|ref|YP_131586.1| DNA-dependent helicase II [Photobacterium profundum SS9] gi|46915009|emb|CAG21784.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum SS9] Length = 724 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 48/231 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +LV R+ L+ + A +++ Sbjct: 2 DVSLLLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLVHRIAWLMQIEQASSYSVMS 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM R+ E++ S Sbjct: 60 VTFTNKAAAEMRGRINELMEGSS------------------------------------- 82 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ T H C +++ L+A + F I D + +L+ + + + LD Sbjct: 83 -AGMWNGTFHGLCHRMLRAHYLDARLPDDFNILDSDDQMRLL----RRLIKAQNLDEKHW 137 Query: 188 LKKAFYEILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIE 235 + + DE + D ++ +T L++ + R +++ Sbjct: 138 PARQAAWYINGKKDEGLRPANIDAFNDPVEKTWLRIYTAYQEACDRAGLVD 188 >gi|319793174|ref|YP_004154814.1| uvrd/rep helicase [Variovorax paradoxus EPS] gi|315595637|gb|ADU36703.1| UvrD/REP helicase [Variovorax paradoxus EPS] Length = 1086 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 90/204 (44%), Gaps = 13/204 (6%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH----PSTLLCLTHTKAAAAEMSHR 81 +A DP RS V A AG+GKT +LV R+LR LL P +L +T TK AA EM R Sbjct: 21 VACDPRRSVAVEACAGAGKTWMLVSRILRALLEEGDSACEPHEILAITFTKKAAGEMRER 80 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNK-SDMSKARHLLITILETPGGLKVQTIHAFC 140 + + + ++ S E L ++ + + + + + L +LE ++ +T HA+ Sbjct: 81 LDQWLEQFAEESPEELVKQLVMRGVEPAAALAAVPRLKGLYRRLLEGGRPVQFRTFHAWF 140 Query: 141 EAIMQQFPL----EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 +++ PL E + S++ + +++ + + ++ D +Y ++ Sbjct: 141 AGLLRNAPLAVLRELGLPSNYELLEDDAEAR--GHTWRPFFEAVTADKLA--LADYYAVV 196 Query: 197 EISNDEDIETLISDIISNRTALKL 220 + + ++ R L Sbjct: 197 ATHGRSQTAKALGEALTKRVEFSL 220 >gi|269215715|ref|ZP_06159569.1| ATP-dependent DNA helicase PcrA [Slackia exigua ATCC 700122] gi|269131202|gb|EEZ62277.1| ATP-dependent DNA helicase PcrA [Slackia exigua ATCC 700122] Length = 770 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 71/190 (37%), Gaps = 45/190 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +D ++ + E +L ++ V A AGSGKT +L R+ +L P +L +T T Sbjct: 4 LDTLNGPQREAVLCTE--GPLLVLAGAGSGKTRVLTYRIAHMLEDLGIQPWQILAITFTN 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ ++ + G+ Sbjct: 62 KAAAEMRERLGRLVGPAAR--------------------------------------GMW 83 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T H+ C I++ + F I D++ SK+L K +A + +D A Sbjct: 84 VSTFHSMCVRILRTDCERLGFSQGFTIYDDDDSKRL----VKDIMAELNIDPKRWPVNAI 139 Query: 193 YEILEISNDE 202 + + +E Sbjct: 140 RSRISAAKNE 149 >gi|154506234|ref|ZP_02042972.1| hypothetical protein RUMGNA_03776 [Ruminococcus gnavus ATCC 29149] gi|153793733|gb|EDN76153.1| hypothetical protein RUMGNA_03776 [Ruminococcus gnavus ATCC 29149] Length = 744 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 72/205 (35%), Gaps = 52/205 (25%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 D +++ + E + +D + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 5 DTLNEQQREAVYCTD--GPLLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++ S + V Sbjct: 63 AAGEMRERVDNLVGFGSE--------------------------------------SIWV 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-----------KKSTLASIML 182 T H+ C I+++ ++F I D + K L+++ K+ L + + Sbjct: 85 STFHSTCVRILRRHIDRLGYDTNFTIYDTDDQKTLMKDVCKLVEIDTKVYKERNLLAAIS 144 Query: 183 DNNEELKKAFYEILEISNDEDIETL 207 E+ A L D E + Sbjct: 145 SAKNEMISAQEYALNAQGDFGKEKI 169 >gi|315634405|ref|ZP_07889692.1| excision endonuclease subunit UvrD [Aggregatibacter segnis ATCC 33393] gi|315476995|gb|EFU67740.1| excision endonuclease subunit UvrD [Aggregatibacter segnis ATCC 33393] Length = 724 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 38/158 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + +E +D ++ + E + A P + V A AGSGKT +L R+ L+ + +++ Sbjct: 2 DFAELLDGLNDKQREAVSA--PLGNYLVLAGAGSGKTRVLTHRIAWLIGVEGVSEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ ++ + + L Sbjct: 60 VTFTNKAAAEMRHRIESVLFDGN---------------------------QRLF------ 86 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G+ V T H+ +++ L+A++ F I D E Sbjct: 87 --GMWVGTFHSIAHRLLRAHHLDADLPQDFQILDSEDQ 122 >gi|320168377|gb|EFW45276.1| ATP-dependent DNA helicase Rep [Capsaspora owczarzaki ATCC 30864] Length = 1072 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 37/163 (22%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 +DL S + ++ + P V A GSGKT ++V RV L+ P T+L +T T Sbjct: 17 VDLSSMNEQQRAAVTAPGGVVCVVAGPGSGKTRVIVHRVAHLIQTGTDPRTILLVTFTNK 76 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ L E L+ + Sbjct: 77 AAAEMKSRLQ-------LLVQEPLAKLVMA------------------------------ 99 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ C +++ + ++S+F+I D E K L++ + Sbjct: 100 GTFHSVCARFLRRHARDVGLSSNFSIIDTEDVKALLKRVIQEL 142 >gi|302524115|ref|ZP_07276457.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. AA4] gi|302433010|gb|EFL04826.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. AA4] Length = 804 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 93/258 (36%), Gaps = 72/258 (27%) Query: 13 TIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 T DL+ Q A + V A AGSGKT +L +R+ LL HP ++ +T Sbjct: 20 TADLLEDLNPAQREAVTHAGGPLLVVAGAGSGKTRVLTRRIAYLLAERGVHPGEIMAITF 79 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV ++ + Sbjct: 80 TNKAAAEMRERVAALVGKRA--------------------------------------NA 101 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-------------- 176 + V T H+ C I+++ +++S F+I D + +K+LI + Sbjct: 102 MWVSTFHSMCVRILRREAKTLDMSSSFSIYDSDDTKRLITLVARDLDIDPKKYAARTLAV 161 Query: 177 ----LASIMLDNNEELKKAFYEI--------------LEISNDEDIETLISDIISNRTAL 218 L + ++D + KA ++ L +N D + LI +S A Sbjct: 162 HISNLKNELVDPEQAASKAANDLERRVAEVYAEYQRRLSSANAFDFDDLIMRTVSLLQAF 221 Query: 219 KLIFFFFSYLWRRKIIEK 236 + ++ +R ++++ Sbjct: 222 PDVAEYYRRRFRHVLVDE 239 >gi|240950109|ref|ZP_04754404.1| DNA-dependent helicase II [Actinobacillus minor NM305] gi|240295410|gb|EER46179.1| DNA-dependent helicase II [Actinobacillus minor NM305] Length = 731 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 38/157 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + V A AGSGKT +L R+ L+ + N S +L Sbjct: 2 DFSLLLDSLNDKQREAVSA--PIGNYLVLAGAGSGKTRVLTHRIAWLIGIENIPESNILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM R+ + S Sbjct: 60 VTFTNKAAAEMRQRIEATLEQSS-----------------------------------HN 84 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164 G+ V T H+ +++ L+AN+ F I D E Sbjct: 85 MFGMWVGTFHSIANRLLRSHYLDANLPQDFQIMDTED 121 >gi|283796111|ref|ZP_06345264.1| ATP-dependent DNA helicase PcrA [Clostridium sp. M62/1] gi|291076326|gb|EFE13690.1| ATP-dependent DNA helicase PcrA [Clostridium sp. M62/1] Length = 830 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 41/164 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL++ +Q V A AGSGKT +L R+ L+ +P ++ +T T Sbjct: 5 FDLLN--PKQQEAVFHTEGPLLVLAGAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV +I+ S + Sbjct: 63 KAAAEMRERVDQIVGFGSE--------------------------------------SIW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + F I D + + L+++ K Sbjct: 85 VSTFHSSCVRILRRHIDRLGYDTSFTIYDTDDQRTLMKQIFKRL 128 >gi|241663638|ref|YP_002981998.1| UvrD/REP helicase [Ralstonia pickettii 12D] gi|240865665|gb|ACS63326.1| UvrD/REP helicase [Ralstonia pickettii 12D] Length = 786 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL++ EQ A P SA + A AGSGKT +L R+ L+ + PS +L +T T Sbjct: 3 DLLANLNPEQRAAITLPDESALILAGAGSGKTRVLTTRIAWLIQSARVSPSGVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM+ R+ ++ + Sbjct: 63 KAAKEMTARLQAMLPI--------------------------------------NTRAMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D + A K L S+ +D+ + K Sbjct: 85 IGTFHGLCNRLLRAHFRDAGLPQTFQILDTQDQLS----AVKRLLKSLNIDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + +I + +R L + + R +++ Sbjct: 141 QYFINGAKEQGLRAGDLEIANEYDRRMADLYAAYDAQCQREGVVD 185 >gi|226947672|ref|YP_002802763.1| ATP-dependent nuclease subunit A [Clostridium botulinum A2 str. Kyoto] gi|254802143|sp|C1FSA8|ADDA_CLOBJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|226844297|gb|ACO86963.1| ATP-dependent nuclease subunit A [Clostridium botulinum A2 str. Kyoto] Length = 1279 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 51/219 (23%), Positives = 80/219 (36%), Gaps = 35/219 (15%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T ++ + V+A AG+GKT +LVQR++ +L P LL +T T AAA Sbjct: 6 WTDEQRQAIFTKNCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + I+ K + P + K LL + T Sbjct: 66 AEMRERIGDAIS---------------KGLDEDPESKVLRKQLTLL-------NKSNIMT 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ I +F I DE + + +EA + NE+ Sbjct: 104 IHSFCLQVIKNNFHTIEIDPNFRICDETEGILMKQEAIDELFDELYEIENEDFINLVESY 163 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 DI L+L F S + + Sbjct: 164 ASRK----------DIRLQEVVLELHRFAKSAPFPYTWL 192 >gi|58040813|ref|YP_192777.1| DNA helicase II [Gluconobacter oxydans 621H] gi|58003227|gb|AAW62121.1| DNA helicase II [Gluconobacter oxydans 621H] Length = 740 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 44/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 S T + +S+ EQ A + T + A AG+GKT +L R +LL A+PS +L + Sbjct: 7 SPTPEYLSRLNPEQRRAIETTEGPLLILAGAGTGKTRVLTTRFAHILLTGRAYPSQILAV 66 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV I+ + Sbjct: 67 TFTNKAAREMRERVSAILGEPAE------------------------------------- 89 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 GL + T HA C ++++ +TS F I D + +L+++ + +D Sbjct: 90 -GLWLGTFHAICARMLRRHAEYVGLTSSFNILDTDDQIRLLKQ----VMEPWKIDTKRWP 144 Query: 189 KKAFYEILEISNDEDI 204 I++ D + Sbjct: 145 PNQLMGIIQRWKDRGL 160 >gi|254515937|ref|ZP_05127997.1| DNA helicase II [gamma proteobacterium NOR5-3] gi|219675659|gb|EED32025.1| DNA helicase II [gamma proteobacterium NOR5-3] Length = 717 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 71/199 (35%), Gaps = 45/199 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ + ++ + E + A + V A AGSGKT +LV R+ L+ P LL Sbjct: 2 DVSDILTGLNDAQREAVAAD--RGNMLVLAGAGSGKTRVLVHRIAWLIRAEGLSPHALLA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ ++ +H Sbjct: 60 VTFTNKAAREMRGRIEHMLQIPTH------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + V T H +++ EA + +F I D + +L++ + + LD + Sbjct: 84 --SMWVGTFHGLAHRLLKTHWKEARLPQNFQILDSDDQLRLVKRVCR----ELQLDESRW 137 Query: 188 LKKAFYEILEISNDEDIET 206 K + DE + Sbjct: 138 PPKQAQWYINAQKDEGLRA 156 >gi|149376496|ref|ZP_01894257.1| DNA-dependent helicase II [Marinobacter algicola DG893] gi|149359163|gb|EDM47626.1| DNA-dependent helicase II [Marinobacter algicola DG893] Length = 721 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 73/199 (36%), Gaps = 45/199 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ID ++ + E + A V A AGSGKT +LV R+ L+ + P+ +L Sbjct: 2 DVSHIIDALNDAQREAVTAQ--NDHLLVLAGAGSGKTRVLVHRIAWLMQVDKVPPTGILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM +R+ +++ + Sbjct: 60 VTFTNKAAKEMRYRIEQMMHIPAR------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GL T H +++ +A + +F + D + +LI K + + +D + Sbjct: 84 --GLWFGTFHGIAHRLLRAHHQDAGLPENFQVLDSDDQLRLI----KRVMRELEIDESRW 137 Query: 188 LKKAFYEILEISNDEDIET 206 K + DE + Sbjct: 138 PPKQAQWFINGQKDEGLRA 156 >gi|168181307|ref|ZP_02615971.1| ATP-dependent nuclease subunit A [Clostridium botulinum Bf] gi|237793761|ref|YP_002861313.1| ATP-dependent nuclease subunit A [Clostridium botulinum Ba4 str. 657] gi|259710033|sp|C3L047|ADDA_CLOB6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|182675388|gb|EDT87349.1| ATP-dependent nuclease subunit A [Clostridium botulinum Bf] gi|229262225|gb|ACQ53258.1| ATP-dependent nuclease subunit A [Clostridium botulinum Ba4 str. 657] Length = 1279 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 26/196 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T ++ + V+A AG+GKT +LVQR++ +L P LL +T T AAA Sbjct: 6 WTDEQRQAIFTKNCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTFTNAAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + I+ K + P + K LL + T Sbjct: 66 AEMRERIGDAIS---------------KGLDEDPESKVLRKQLTLL-------NKSNIMT 103 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+FC +++ I +F I DE + + +EA + NE+ Sbjct: 104 IHSFCLQVIKNNFHTIEIDPNFRICDETEGILMKQEAIDELFDELYEIENEDFINLVESY 163 Query: 196 LEISNDEDIETLISDI 211 D ++ ++ ++ Sbjct: 164 AS-RKDIRLQGVVLEL 178 >gi|71906186|ref|YP_283773.1| ATP-dependent DNA helicase UvrD [Dechloromonas aromatica RCB] gi|71845807|gb|AAZ45303.1| ATP-dependent DNA helicase UvrD [Dechloromonas aromatica RCB] Length = 713 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 80/225 (35%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ S QL A P A + A AGSGKT +L R+ L+ P +L +T T Sbjct: 3 DLLANLNSPQLQAVTLPPVHALILAGAGSGKTRVLTTRIAWLISTGQVGPHGVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM+ R+ ++ G+ Sbjct: 63 KAAKEMTARLSSLVPI--------------------------------------NVRGMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ EA + F I D + K L ++ +D+ + + Sbjct: 85 IGTFHGLCNRLLRAHFREAGLPQTFQILDSADQLAM----VKRLLKNLNIDDEKYPPREL 140 Query: 193 YEILEISNDEDIETLISDIISNRTA--LKLIFFFFSYLWRRKIIE 235 + ++ + ++ N T +++ + + R + + Sbjct: 141 CHFINAHKEQGVRAAQAEAYDNYTQKRVEIYAEYENQCNREGVCD 185 >gi|92115386|ref|YP_575314.1| ATP-dependent DNA helicase UvrD [Chromohalobacter salexigens DSM 3043] gi|91798476|gb|ABE60615.1| ATP-dependent DNA helicase UvrD [Chromohalobacter salexigens DSM 3043] Length = 739 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 70/199 (35%), Gaps = 45/199 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E S P + V A AGSGKT +LV R+ L+ + P +L Sbjct: 8 DVSPLLDSLNTAQRE--AVSHPQGNLLVLAGAGSGKTRVLVHRIAWLMQVEGLSPYAILA 65 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ ++ + Sbjct: 66 VTFTNKAAREMRTRLEALLG--------------------------------------LS 87 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + V T H+ +++ +A + HF I D + +L K L +D+ Sbjct: 88 LRNMWVGTFHSIAHRLLRTHWHDARLPQHFQIIDGDDQLRL----VKRLLKDHRIDDERF 143 Query: 188 LKKAFYEILEISNDEDIET 206 K + +E + Sbjct: 144 PPKQVQYFISGCKEEGLRA 162 >gi|225157628|ref|ZP_03725018.1| UvrD/REP helicase [Opitutaceae bacterium TAV2] gi|224802695|gb|EEG20948.1| UvrD/REP helicase [Opitutaceae bacterium TAV2] Length = 678 Score = 136 bits (343), Expect = 3e-30, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 86/236 (36%), Gaps = 41/236 (17%) Query: 5 NSFQEHSETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63 +S + TID + EQL A + P V A AGSGKT L RV LL P Sbjct: 12 DSAATTAATIDFAYELNEEQLAAVTAPPGPLLVLAGAGSGKTRTLTYRVAWLLAQGIKPW 71 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L LT T AA EM HRV ++ Sbjct: 72 QILLLTFTNKAAKEMLHRVQDLTGVE---------------------------------- 97 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 PG T H+ I++ ++ +F I D + S+ ++++A +S + Sbjct: 98 ----PGRFWGGTFHSIGSRILRMHGDAIGVSKNFTILDADDSETILKQAVESADRLFFKN 153 Query: 184 NNEELKKAFYEILEISND--EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 + +L ++ + + I + + F F+ ++++ E++ Sbjct: 154 KTNPKPGPLHSVLSLARNTCQTIAATVEKYFPQYQDISQKFPAFADAYQKRKREQN 209 >gi|300782729|ref|YP_003763020.1| DNA helicase II/ATP-dependent DNA helicase [Amycolatopsis mediterranei U32] gi|299792243|gb|ADJ42618.1| DNA helicase II/ATP-dependent DNA helicase [Amycolatopsis mediterranei U32] Length = 804 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 +E +D ++ + E + V A AGSGKT +L +R+ LL HP ++ +T Sbjct: 22 AELLDDLNPAQRE--AVTHAGGPLLVVAGAGSGKTRVLTRRIAYLLGQRRVHPGEIMAIT 79 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM RV ++ + Sbjct: 80 FTNKAAAEMRERVAALVGRRA--------------------------------------N 101 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ +++S F+I D + +K+LI + Sbjct: 102 AMWVSTFHSMCVRILRREAKVLDMSSSFSIYDSDDTKRLITLVARDL 148 >gi|308234140|ref|ZP_07664877.1| UvrD/REP helicase [Atopobium vaginae DSM 15829] gi|328943635|ref|ZP_08241100.1| ATP-dependent helicase PcrA [Atopobium vaginae DSM 15829] gi|327491604|gb|EGF23378.1| ATP-dependent helicase PcrA [Atopobium vaginae DSM 15829] Length = 868 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 41/164 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 ID ++ + + +L + V A AGSGKT +L R+ L+ P ++L +T T Sbjct: 41 IDSLNPQQKQAVLCT--QGPLLVLAGAGSGKTRVLTYRIAYLIEEQGVSPWSILAITFTN 98 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 99 KAAKEMRERIEALLPGRTQ--------------------------------------GMW 120 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HA C I++ + +F I D + +K+LI+ Sbjct: 121 VSTFHAMCVRILRTHAERLGYSKNFTIYDTDDTKRLIKHIMGDL 164 >gi|182625530|ref|ZP_02953301.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens D str. JGS1721] gi|177909218|gb|EDT71683.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens D str. JGS1721] Length = 751 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 39/164 (23%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL S EQ A+ + A AGSGKT +L R+ ++ + P +L +T T Sbjct: 1 MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + + Sbjct: 61 KAAGEMRERVKSLVGEVA--------------------------------------NNMW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ + + F I D K LI+ K Sbjct: 83 ISTFHSSCVRILRREIDKLGYSKDFTIYDSSDQKTLIKLVMKEL 126 >gi|300703480|ref|YP_003745082.1| DNA helicase II [Ralstonia solanacearum CFBP2957] gi|299071143|emb|CBJ42456.1| DNA helicase II [Ralstonia solanacearum CFBP2957] Length = 791 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 84/225 (37%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P SA + A AGSGKT +L R+ L+ ++ PS +L +T T Sbjct: 3 DLLAHLNPEQRAAVTLPDESALILAGAGSGKTRVLTTRIAWLIQSSRVSPSGVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM+ R+ ++ + Sbjct: 63 KAAKEMTARLSAMLPI--------------------------------------NTRAMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D + A K L S+ +D+ + K Sbjct: 85 IGTFHGLCNRLLRAHYRDAGLPQTFQILDTQDQLS----AVKRLLKSLNIDDEKFPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + +I + +R L + + R +++ Sbjct: 141 QYFINGAKEQGLRAGDLEIANEFDRRMADLYAAYDAQCQREGVVD 185 >gi|319442768|ref|ZP_07991924.1| putative ATP-dependent DNA helicase II [Corynebacterium variabile DSM 44702] Length = 931 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 57/161 (35%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L +++ + A AGSGKT +L +RV LL P +L +T T AA Sbjct: 113 LAGLNPAQRAAVVHHGSPLLIVAGAGSGKTSVLTRRVAWLLAHGVAPWQILAITFTNKAA 172 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM RV +++ + + + T Sbjct: 173 AEMRERVTDLVGPVAE--------------------------------------RMWLST 194 Query: 136 IHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKS 175 H+ C I++ + ++F I D + K+LI K Sbjct: 195 FHSLCVRILRANAQLIEGLNTNFTIYDSDDQKRLITMVLKD 235 >gi|227874195|ref|ZP_03992397.1| ATP-dependent DNA helicase PcrA [Oribacterium sinus F0268] gi|227839950|gb|EEJ50378.1| ATP-dependent DNA helicase PcrA [Oribacterium sinus F0268] Length = 793 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 K + A+ + A AGSGKT +L R+ L+L P +L +T T AA EM Sbjct: 8 NKEQYEAATHGEGPLLILAGAGSGKTRVLTHRIAYLILEKGISPYQILAITFTNKAAQEM 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ E G + V T H+ Sbjct: 68 RDRVNQLLP--------------------------------------ERQGEIWVSTFHS 89 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ S F+I D + K ++ + K Sbjct: 90 MCLRILRREIGNLGYDSDFSIYDTDDQKTVMRQVFKEL 127 >gi|90408773|ref|ZP_01216918.1| putative ATP-dependent DNA helicase Rep [Psychromonas sp. CNPT3] gi|90310117|gb|EAS38257.1| putative ATP-dependent DNA helicase Rep [Psychromonas sp. CNPT3] Length = 722 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 73/199 (36%), Gaps = 45/199 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLC 67 + S ID ++ ++ S P ++ V A AGSGKT +L R+ LL P+ +L Sbjct: 2 DVSYLIDGLNDF--QRAAVSCPQQNMLVLAGAGSGKTRVLTHRIAWLLEVEHIPTYGILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ I + Sbjct: 60 VTFTNKAAKEMRARINAICP--------------------------------------QQ 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ + T H +++ EAN+ HF I D + +K+I K + + LD+ Sbjct: 82 ISGMWIGTFHGIAHRLLRLHFQEANLPEHFQIIDSDDQQKMI----KRLIKVLNLDDKYY 137 Query: 188 LKKAFYEILEISNDEDIET 206 K + DE + Sbjct: 138 PAKELQWYINDKKDEGLRA 156 >gi|302330341|gb|ADL20535.1| ATP-dependent DNA helicase [Corynebacterium pseudotuberculosis 1002] Length = 785 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 75/196 (38%), Gaps = 52/196 (26%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78 +Q + A AGSGKT +L +R+ L+ + P +L +T T AAAEM Sbjct: 6 NPQQQQAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLMRIRGVQPGQILAITFTNKAAAEM 65 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ + + V T H+ Sbjct: 66 RERVAHLVGPIA--------------------------------------SRMWVSTFHS 87 Query: 139 FCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 C I+++ L A + S+F I D + SK+L LA I D N ++KK +L Sbjct: 88 TCVRILREQAQLVAGLNSNFTIYDSDDSKRL--------LAMISKDMNLDIKKFTPRLL- 138 Query: 198 ISNDEDIETLISDIIS 213 I L +++IS Sbjct: 139 ---GAGISNLKNELIS 151 >gi|269796104|ref|YP_003315559.1| ATP-dependent DNA helicase PcrA [Sanguibacter keddieii DSM 10542] gi|269098289|gb|ACZ22725.1| ATP-dependent DNA helicase PcrA [Sanguibacter keddieii DSM 10542] Length = 857 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 70/190 (36%), Gaps = 44/190 (23%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ +Q A + S + A AGSGKT +L R+ LL A PS +L +T T Sbjct: 26 ELVEGLNPQQREAVEHGGSPLLIVAGAGSGKTRVLTHRIAHLLATGRARPSEILAITFTN 85 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV I+ + G + Sbjct: 86 KAAAEMRERVAAIVGPAA--------------------------------------GRMW 107 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T H+ C I+++ + F+I D S++LI L + LD + K Sbjct: 108 VSTFHSACVRILRREAKSLGLRQSFSIYDSADSQRLI----TMVLRELDLDPKKFPAKQL 163 Query: 193 YEILEISNDE 202 + DE Sbjct: 164 QNKISSLKDE 173 >gi|92117527|ref|YP_577256.1| UvrD/REP helicase [Nitrobacter hamburgensis X14] gi|91800421|gb|ABE62796.1| UvrD/REP helicase [Nitrobacter hamburgensis X14] Length = 1110 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 88/205 (42%), Gaps = 8/205 (3%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + ++ ++ + + R+ V A AGSGKT ++ RV LL P + +T T+ Sbjct: 1 MTVLPDIEARKTALTAVNRTLLVEAGAGSGKTSVMAGRVAVLLSKGTEPKHIAAITFTEF 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA+E+ R+ T S L + P+ + + + L L L Sbjct: 61 AASELRQRIERFTTELS------LGRVPKDLLQAFPDGVEAA-QKENLSRALGAFDQLMC 113 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TIH F +A+++ +P EANI I D +++ +E + L S + ++++ A Sbjct: 114 GTIHGFAQALIKPYPAEANIDPGADIVDPAEAELAFQERYDAWLRSQLSGDHDDGLVAQI 173 Query: 194 EILEISNDEDIETLISDII-SNRTA 217 + ++ ++ + NR A Sbjct: 174 VLSDVDGGLKFVAEVAQFLRKNRDA 198 >gi|18311242|ref|NP_563176.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens str. 13] gi|18145925|dbj|BAB81966.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13] Length = 751 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 39/164 (23%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL S EQ A+ + A AGSGKT +L R+ ++ + P +L +T T Sbjct: 1 MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + + Sbjct: 61 KAAGEMRERVKSLVGEVA--------------------------------------NNMW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ + + F I D K LI+ K Sbjct: 83 ISTFHSSCVRILRREIDKLGYSKDFTIYDSSDQKTLIKLVMKEL 126 >gi|168213169|ref|ZP_02638794.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens CPE str. F4969] gi|170715249|gb|EDT27431.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens CPE str. F4969] Length = 751 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 39/164 (23%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL S EQ A+ + A AGSGKT +L R+ ++ + P +L +T T Sbjct: 1 MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + + Sbjct: 61 KAAGEMRERVKSLVGEVA--------------------------------------NNMW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ + + F I D K LI+ K Sbjct: 83 ISTFHSSCVRILRREIDKLGYSKDFTIYDSSDQKTLIKLVMKEL 126 >gi|148652066|ref|YP_001279159.1| UvrD/REP helicase [Psychrobacter sp. PRwf-1] gi|148571150|gb|ABQ93209.1| UvrD/REP helicase [Psychrobacter sp. PRwf-1] Length = 742 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 51/213 (23%), Positives = 83/213 (38%), Gaps = 32/213 (15%) Query: 4 HNSFQEHSETIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62 HNS SE +D + QL A+ V A AGSGKT L R L+ + A P Sbjct: 70 HNSVLSSSE-VDYAGELNPSQLLAATTTEGKVLVIAGAGSGKTKTLTYRTSYLIESGASP 128 Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122 S++L LT T+ AA E+ RV ++ + + ++ I Sbjct: 129 SSILLLTFTRKAANEIKGRVKSLLAESLADNRALSGLDLNAITS---------------- 172 Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE-AKKSTLASIM 181 T H+FC +++++ I F I D S+ ++ K+ + Sbjct: 173 -----------GTFHSFCNMLLRRYSGLLGINPKFTILDTGDSEDALDMICKEQGIVRKN 221 Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDIISN 214 + KK ++ S + I L+ D+I N Sbjct: 222 MKQAFPRKKTLQNLISTSRNRHI--LLRDLIEN 252 >gi|21673182|ref|NP_661247.1| DNA helicase II [Chlorobium tepidum TLS] gi|21646262|gb|AAM71589.1| DNA helicase II [Chlorobium tepidum TLS] Length = 759 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 64/170 (37%), Gaps = 40/170 (23%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66 + ++ + ++ + + +LA++ V A AGSGKT ++ R+ L+ P +L Sbjct: 10 EALTDFLQGLNDVQRQAVLATE--GPVMVLAGAGSGKTRVITYRIAHLIRNVGVLPQNIL 67 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 LT T AA EM R+ I+ S Sbjct: 68 ALTFTNKAAGEMRQRIDSILEYGS------------------------------------ 91 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L + T H+ +++ + +F+I D + SK LI++ K Sbjct: 92 -ASSLWIGTFHSVFARLLRSYIHLIGYDRNFSIFDADDSKSLIKQCMKEL 140 >gi|257054559|ref|YP_003132391.1| ATP-dependent DNA helicase PcrA [Saccharomonospora viridis DSM 43017] gi|256584431|gb|ACU95564.1| ATP-dependent DNA helicase PcrA [Saccharomonospora viridis DSM 43017] Length = 817 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 70/169 (41%), Gaps = 41/169 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 H +D ++ +++ R + A AGSGKT +L +R+ LL A HP ++ Sbjct: 17 SHGPLLDDLN--PAQRAAVEHQGRPLLIVAGAGSGKTRVLTRRIAYLLAARGVHPGQIMA 74 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV++++ + Sbjct: 75 ITFTNKAAAEMRDRVVDLVGGRA------------------------------------- 97 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G + V T H+ C ++++ +TS+F+I D + S++L+ + Sbjct: 98 -GAMWVSTFHSMCVRLLRREAKTLELTSNFSIYDADDSRRLMALVGRDL 145 >gi|169347181|ref|ZP_02866123.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens C str. JGS1495] gi|169296864|gb|EDS78993.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens C str. JGS1495] Length = 751 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 39/164 (23%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL S EQ A+ + A AGSGKT +L R+ ++ + P +L +T T Sbjct: 1 MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + + Sbjct: 61 KAAGEMRERVKSLVGEVA--------------------------------------NNMW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ + + F I D K LI+ K Sbjct: 83 ISTFHSSCVRILRREIDKLGYSKDFTIYDSSDQKTLIKLVMKEL 126 >gi|225568813|ref|ZP_03777838.1| hypothetical protein CLOHYLEM_04892 [Clostridium hylemonae DSM 15053] gi|225162312|gb|EEG74931.1| hypothetical protein CLOHYLEM_04892 [Clostridium hylemonae DSM 15053] Length = 743 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 + +Q + A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 8 NEQQQEAVYHTEGPLLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAGEM 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV I+ S + V T H+ Sbjct: 68 RERVDNIVGFGSE--------------------------------------SIWVSTFHS 89 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 C I+++ + ++F I D + K L+++ + Sbjct: 90 TCVRILRRHIDKLGYDTNFTIYDSDDQKTLMKDVCR 125 >gi|323141943|ref|ZP_08076800.1| putative ATP-dependent nuclease subunit A [Phascolarctobacterium sp. YIT 12067] gi|322413578|gb|EFY04440.1| putative ATP-dependent nuclease subunit A [Phascolarctobacterium sp. YIT 12067] Length = 1140 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 78/169 (46%), Gaps = 21/169 (12%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAA 75 + T + L + + + A AGSGKT++L++R +++L ++ +P+ ++ +T T+ AA Sbjct: 14 NPTPEQALAINTIKSNVSLLAGAGSGKTYVLMKRFVQILRSDLSVNPTNIVAITFTRKAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ RV + + ++D+ + R L+ + T Sbjct: 74 DEIKGRVRQAVGECVEQ-----------------AQTDLERLR--WQEHLQKVESAPIST 114 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 IH+ C I++ P+E + F I ++ +++ +E + L + +N Sbjct: 115 IHSLCSRILRDNPVETQLDPEFTILEDFEAQDFFKETLQQFLRKNIKEN 163 >gi|124486140|ref|YP_001030756.1| hypothetical protein Mlab_1322 [Methanocorpusculum labreanum Z] gi|124363681|gb|ABN07489.1| UvrD/REP helicase [Methanocorpusculum labreanum Z] Length = 1057 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 84/232 (36%), Gaps = 40/232 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-----ANAHPSTLLCLTH 70 + ++ Q A S V+A AG+GKT +L +R + L + S +L LT+ Sbjct: 1 MTAELTEAQRRALFMEESVCVTAGAGTGKTFLLTKRYIAALTYRRETMHTGASDILALTY 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM ++ + + E L + E+ Sbjct: 61 TDKAAAEMRTKIGRELKKAAEEDPE-------------------------LEGVWESFSR 95 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + T H FC +++++F EA + + F++ DE + +L T+ ++ L Sbjct: 96 CSISTFHGFCLSLLKEFAYEAGLDAGFSVMDELDTHEL----VTGTIREMLEHPPATLFG 151 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYL------WRRKIIEK 236 + + + I + ++ A W++ E+ Sbjct: 152 DVVTLFDHLREATIAGYLQSLMRIEGAKDWFSLLEKNPSAVIAVWQKAWDEE 203 >gi|87121050|ref|ZP_01076941.1| DNA helicase II [Marinomonas sp. MED121] gi|86163542|gb|EAQ64816.1| DNA helicase II [Marinomonas sp. MED121] Length = 735 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 72/196 (36%), Gaps = 45/196 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 + S +D ++ + E + A P ++ + A AGSGKT +LV R+ L+ A P +++ Sbjct: 2 DVSFILDSLNDKQREAVAA--PLQNTLILAGAGSGKTRVLVHRIAWLMHAYEVSPFSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ +++ Sbjct: 60 VTFTNKAAKEMQARIEQLVGVP-------------------------------------- 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 P G+ V T H +++ +A + +F I D + ++ K + +D Sbjct: 82 PQGMWVGTFHGLAHRLLRAHWRDAGLKENFQIMDSDDQLRM----VKRLMREQNIDETRW 137 Query: 188 LKKAFYEILEISNDED 203 K + DE Sbjct: 138 PPKQVCWYINGQKDEG 153 >gi|256821959|ref|YP_003145922.1| UvrD/REP helicase [Kangiella koreensis DSM 16069] gi|256795498|gb|ACV26154.1| UvrD/REP helicase [Kangiella koreensis DSM 16069] Length = 1138 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 99/226 (43%), Gaps = 9/226 (3%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +I K+ Q A D TRS V A AGSGKT +L QRVL+LL +P ++ +T T AA Sbjct: 1 MIQDLKARQE-AIDHTRSFIVQAPAGSGKTELLTQRVLKLLAVVQNPEEVVAITFTNKAA 59 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +R+++ + + + + K+ + KS + + + L ++ +P L+++T Sbjct: 60 REMQNRIMQSLYSAQGPKPD----QPHKVLTWELAKSVLQRDQELDWGLMHSPHRLRIKT 115 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 + C I Q P+ A + + +L +A KS + + E + + Sbjct: 116 FDSLCATIANQMPVLAKFGGQLSPTENP--YELYYQAAKSVVDGV--KTQEAWAGHVHRV 171 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 L ++++ + + + R I+E+ + Sbjct: 172 LAHTDNKVEQLQELLAQQLAKRDQWLRLEQEGTAERDILEQGFIDV 217 >gi|323127008|gb|ADX24305.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 1210 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 83/224 (37%), Gaps = 27/224 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++V+R+L +L L T T AA E+ Sbjct: 30 TPEQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSVDRLFISTFTVKAATELR 89 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + + A + + L + L L+ + T+ AF Sbjct: 90 ERIEKKLYAEIAKTSDSL-------------------LKAYLTDQLQALSQADIGTMDAF 130 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ ++ I+ F I D+ + L + M ++ L KA + Sbjct: 131 AQKVLIRYGYSIGISPQFRIMQDKAEQDILKRDVFSKLFEEFMTQDDPSLFKALVK--NF 188 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 S + + +++ F S ++ +E++ A Sbjct: 189 SGNRKDASSFREVV-----YSCYSFSQSTENPKQWLEETFLKAA 227 >gi|307332408|ref|ZP_07611476.1| ATP-dependent DNA helicase PcrA [Streptomyces violaceusniger Tu 4113] gi|306881942|gb|EFN13060.1| ATP-dependent DNA helicase PcrA [Streptomyces violaceusniger Tu 4113] Length = 824 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 62/167 (37%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 S +D +++ ++ + A AGSGKT +L R+ LL HP +L +T Sbjct: 70 SALLDGLNE--QQRAAVEHTGSPLLIVAGAGSGKTRVLTHRIAYLLGARGTHPGQILAIT 127 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV E++ + Sbjct: 128 FTNKAAGEMKERVEELVGPRA--------------------------------------N 149 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ + TS F+I D SK+L+ + Sbjct: 150 AMWVSTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMSLVCRDL 196 >gi|296158133|ref|ZP_06840965.1| UvrD/REP helicase [Burkholderia sp. Ch1-1] gi|295891469|gb|EFG71255.1| UvrD/REP helicase [Burkholderia sp. Ch1-1] Length = 783 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMSRLSALLPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLS----AIKRLMKGLNIDDEKYPAKNL 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVD 185 >gi|168205088|ref|ZP_02631093.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens E str. JGS1987] gi|170663345|gb|EDT16028.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens E str. JGS1987] Length = 751 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 39/164 (23%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL S EQ A+ + A AGSGKT +L R+ ++ + P +L +T T Sbjct: 1 MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + + Sbjct: 61 KAAGEMRERVKSLVGEVA--------------------------------------NNMW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ + + F I D K LI+ K Sbjct: 83 ISTFHSSCVRILRREIDKLGYSKDFTIYDSSDQKTLIKLVMKEL 126 >gi|170756184|ref|YP_001780091.1| recombination helicase AddA [Clostridium botulinum B1 str. Okra] gi|251764513|sp|B1IEN0|ADDA_CLOBK RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|169121396|gb|ACA45232.1| ATP-dependent nuclease subunit A [Clostridium botulinum B1 str. Okra] Length = 1279 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 84/224 (37%), Gaps = 35/224 (15%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 + T ++ + V+A AG+GKT +LVQR++ +L P LL +T Sbjct: 1 MSGTKWTDEQRQAIFTKNCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAAEM R+ + I+ K + P + K LL Sbjct: 61 TNAAAAEMRERIGDAIS---------------KGLDEDPESKVLRKQLTLL-------NK 98 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + TIH+FC +++ I +F I DE + + +EA + NE+ Sbjct: 99 SNIMTIHSFCLQVIKNNFHTMEIDPNFRICDETEGILMKQEAIDELFDELYEIENED--- 155 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 F ++E L L+L F S + + Sbjct: 156 -FINLVESYASRKDTRL------QEVVLELHRFAKSAPFPYTWL 192 >gi|291518464|emb|CBK73685.1| Superfamily I DNA and RNA helicases [Butyrivibrio fibrisolvens 16/4] Length = 801 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 84/221 (38%), Gaps = 48/221 (21%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 +D ++ + E ++ ++ + A AGSGKT +L RV L+ P ++ +T T Sbjct: 3 LDFLNDRQREGVVTTE--GPVLILAGAGSGKTRVLTHRVAYLIEQGVMPYNIMAITFTNK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ I+ S G+ V Sbjct: 61 AAREMRERIDNIVGFGS--------------------------------------DGVWV 82 Query: 134 QTIHAFCEAIMQQFPLEA--NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 T HA C I+++F +S+F I D + K L++E K + +D + ++ Sbjct: 83 ATFHASCVRILRRFCENLGQGYSSNFTIYDTDDCKTLMKEVCK----YLQIDTKQFKERT 138 Query: 192 FYEILEISNDE--DIETLISDIISNRTALKLIFFFFSYLWR 230 F ++ + ++ E + + + + + Y R Sbjct: 139 FLNVISDAKNKLIGPEEFTNRAMGDFNMSRQATVYREYQAR 179 >gi|300774389|ref|ZP_07084253.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300507033|gb|EFK38167.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 1046 Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats. Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 18/183 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 ++A+AGSGKT+ LVQR+L + L +L LT T AA EM R+L + +S Sbjct: 7 VINASAGSGKTYALVQRLLMICLRYPNQQQSIRNILALTFTNKAANEMKERILSWLGNFS 66 Query: 91 HLSDEILSAEITKI------QGKKPNKSDM-SKARHLLITILETPGGLKVQTIHAFCEAI 143 D +A++ I QG K D+ +++ LL +L L + TI F + Sbjct: 67 -AKDYAENADLKNIQKAFEEQGLKITIDDLHQRSKKLLDYVLHNYSTLNIGTIDRFNSRL 125 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS--ND 201 ++ F E + +F + E +++ + EA L I NE + +F + ++ S N+ Sbjct: 126 VRSFSYELGLAKNFNL--EIEAEPFLIEAVDKMLDQI--GENETISNSFMDYVDYSLENN 181 Query: 202 EDI 204 E I Sbjct: 182 ERI 184 >gi|319778234|ref|YP_004129147.1| ATP-dependent DNA helicase UvrD/PcrA [Taylorella equigenitalis MCE9] gi|317108258|gb|ADU91004.1| ATP-dependent DNA helicase UvrD/PcrA [Taylorella equigenitalis MCE9] Length = 735 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 60/168 (35%), Gaps = 41/168 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 S +D ++ K + + + V A AGSGKT +L R+ L+ A P +L + Sbjct: 2 MSSVLDSLN--KQQLAAVTSEAKHLLVLAGAGSGKTKVLTTRIAWLVQQGIATPERILAV 59 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R+ + I P Sbjct: 60 TFTNKAAKEMMERIGKYIPV--------------------------------------NP 81 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L V T H+ C I++ E + + F I D K +++ KS Sbjct: 82 KSLWVGTFHSICHRILRAHHKEVGLPAAFQILDMADQKSMLKRILKSM 129 >gi|168211266|ref|ZP_02636891.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens B str. ATCC 3626] gi|170710740|gb|EDT22922.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens B str. ATCC 3626] Length = 751 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 39/164 (23%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL S EQ A+ + A AGSGKT +L R+ ++ + P +L +T T Sbjct: 1 MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + + Sbjct: 61 KAAGEMRERVKSLVGEVA--------------------------------------NNMW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ + + F I D K LI+ K Sbjct: 83 ISTFHSSCVRILRREIDKLGYSKDFTIYDSSDQKTLIKLVMKEL 126 >gi|110803328|ref|YP_699522.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens SM101] gi|110683829|gb|ABG87199.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens SM101] Length = 751 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 39/164 (23%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL S EQ A+ + A AGSGKT +L R+ ++ + P +L +T T Sbjct: 1 MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + + Sbjct: 61 KAAGEMRERVKSLVGEVA--------------------------------------NNMW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ + + F I D K LI+ K Sbjct: 83 ISTFHSSCVRILRREIDKLGYSKDFTIYDSSDQKTLIKLVMKEL 126 >gi|331006665|ref|ZP_08329945.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium IMCC1989] gi|330419518|gb|EGG93904.1| ATP-dependent DNA helicase UvrD/PcrA [gamma proteobacterium IMCC1989] Length = 745 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 74/196 (37%), Gaps = 36/196 (18%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + E + A P + + A AGSGKT +LV R+ L+ + + P +++ Sbjct: 2 DVSYLLDDLNDAQREAVSA--PACNQLILAGAGSGKTRVLVHRIAWLIQVEHVSPHSIMS 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ +++ L ++ Sbjct: 60 VTFTNKAAREMRGRLEDLLDGNL-----------------------------LDSNLVGN 90 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + V T H +++ N+ +F I D + +L K ++ LD + Sbjct: 91 SRSMWVGTFHGIAHRLLKAHWKILNLPQNFQILDSDDQLRL----VKRVCQTLKLDETKW 146 Query: 188 LKKAFYEILEISNDED 203 + + DE Sbjct: 147 PPRQAQSYINSQKDEG 162 >gi|320009010|gb|ADW03860.1| ATP-dependent DNA helicase PcrA [Streptomyces flavogriseus ATCC 33331] Length = 812 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 61/169 (36%), Gaps = 41/169 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 + + +D ++ ++ + A AGSGKT +L R+ LL HP +L Sbjct: 62 DSAALLDGLN--TEQRAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLAERGVHPGQILA 119 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV +++ + Sbjct: 120 ITFTNKAAGEMKERVEDLVGPRA------------------------------------- 142 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ TS F+I D SK+L+ + Sbjct: 143 -NAMWVMTFHSACVRILRRESKRLGFTSSFSIYDAADSKRLMALVCRDL 190 >gi|255534428|ref|YP_003094799.1| ATP-dependent helicase [Flavobacteriaceae bacterium 3519-10] gi|255340624|gb|ACU06737.1| ATP-dependent helicase [Flavobacteriaceae bacterium 3519-10] Length = 1064 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 14/179 (7%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----PSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 ++A+AGSGKT+ LVQ +L + L + +L LT T AA EM R+++ + +S Sbjct: 18 VINASAGSGKTYALVQNLLVICLKHPSQPDKIRNILALTFTNKAANEMKQRIIKWLREFS 77 Query: 91 HLS-----DEILSAEITKIQGKKPNKSDM-SKARHLLITILETPGGLKVQTIHAFCEAIM 144 D + K+QG + + + ++R +L +L L + TI F ++ Sbjct: 78 SAEYANNQDLKNIQQKMKVQGIELSLETLHKRSRKILDYVLHNYSTLNIGTIDKFNSRLV 137 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + F E + +F + E ++ + EA + LA I +N+ + AF + + S D + Sbjct: 138 RSFSYELGLAQNFNL--EINAEPYLVEAVEKMLADIGAEND--VSDAFMDFVNYSLDNN 192 >gi|299066163|emb|CBJ37346.1| DNA helicase II [Ralstonia solanacearum CMR15] Length = 794 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 85/225 (37%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L++ EQ A P SA + A AGSGKT +L R+ L+ + PS +L +T T Sbjct: 3 ELLAHLNPEQRAAVTLPDESALILAGAGSGKTRVLTTRIAWLIQSARVSPSGVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM+ R+ ++ G+ Sbjct: 63 KAAKEMNARLSAMLPI--------------------------------------NTRGMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D + A K L S+ +D+ + K+ Sbjct: 85 IGTFHGLCNRLLRAHYRDAGLPQTFQILDTQDQLS----AVKRLLKSLNIDDEKFPPKSV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + +I + +R L + + R +++ Sbjct: 141 QYFINGAKEQGLRAGDLEIANEFDRRMADLYAAYDAQCQREGVVD 185 >gi|307730434|ref|YP_003907658.1| UvrD/REP helicase [Burkholderia sp. CCGE1003] gi|307584969|gb|ADN58367.1| UvrD/REP helicase [Burkholderia sp. CCGE1003] Length = 787 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGLASPATILAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMSRLSALLPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLS----AIKRLMKGLNIDDEKYPAKNL 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVD 185 >gi|168216776|ref|ZP_02642401.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens NCTC 8239] gi|182381218|gb|EDT78697.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens NCTC 8239] Length = 751 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 39/164 (23%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL S EQ A+ + A AGSGKT +L R+ ++ + P +L +T T Sbjct: 1 MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + + Sbjct: 61 KAAGEMRERVKSLVGEVA--------------------------------------NNMW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ + + F I D K LI+ K Sbjct: 83 ISTFHSSCVRILRREIDKLGYSKDFTIYDSSDQKTLIKLVMKEL 126 >gi|32473647|ref|NP_866641.1| helicase [Rhodopirellula baltica SH 1] gi|32444183|emb|CAD74180.1| probable helicase [Rhodopirellula baltica SH 1] Length = 924 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 8/206 (3%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 + +D + ++ + A +PT V A+AG+GKT+ L R+L++LL A P T+L Sbjct: 39 SLPDELDFVVESPTTLREAFEPT---LVRASAGTGKTYQLTARLLKILLTGAPPETILAT 95 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T+ AA E+ RVL + + E E+ + G + + L +L Sbjct: 96 TFTRKAAGEILERVLITLGKAAIDPSENAITELRQQVGIEGLPRHVCGQ--LFHRLLRNI 153 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 L++ T+ + + + P E ++ + + DE + L + A + + S+ E Sbjct: 154 HRLRICTLDSLFSQLARALPFELDLPPGWRLTDEVEEIWLRQVAIGNLIESL---QPAET 210 Query: 189 KKAFYEILEISNDEDIETLISDIISN 214 + + +I + D++ N Sbjct: 211 ETLISMLSRGDVKRNIARELIDVVEN 236 >gi|323704721|ref|ZP_08116299.1| UvrD/REP helicase [Thermoanaerobacterium xylanolyticum LX-11] gi|323536183|gb|EGB25956.1| UvrD/REP helicase [Thermoanaerobacterium xylanolyticum LX-11] Length = 1073 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 24/169 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL--LANAHPSTLLCLTHTKAAAA 76 EQ A D ++ + A AGSGKT +L +R ++LL + + ++ +T T+ AAA Sbjct: 10 DLSQEQSRALDIGKNVALKAGAGSGKTRVLTKRYIKLLNDVTDIKIDNIVAITFTRKAAA 69 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ + I + K ++ + TI Sbjct: 70 EMKERIRKEIESLCKSD----------------------KDGKKWTVFRDSLIFANIDTI 107 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 H FCE +++ +E ++ F+I DE + +++ + ++ D Sbjct: 108 HGFCEKMIRDNFVETSVDPTFSIMDEAEVSTAVKKMVEIVTGEVINDEK 156 >gi|238897902|ref|YP_002923581.1| DNA-dependent ATPase I and helicase II [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465659|gb|ACQ67433.1| DNA-dependent ATPase I and helicase II [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 731 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 77/196 (39%), Gaps = 45/196 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 ++S+ I+ +++ ++ + V A AGSGKT +LV R+ LL + + P ++L Sbjct: 2 DYSKLINTLNEK--QRTAVTSSADHILVLAGAGSGKTRVLVHRIAWLLSVEHVSPYSILS 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HRV ++ + Sbjct: 60 VTFTNKAAAEMRHRVSALMGSMQ------------------------------------- 82 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ T H +++ LEAN+ F I D + +L+++ KS + LD Sbjct: 83 -DGMWTGTFHGLAHRLLRMHYLEANLPKDFQIIDNDDQLRLLKKIIKS----LNLDEKRW 137 Query: 188 LKKAFYEILEISNDED 203 + + D+ Sbjct: 138 APRQAMWYINHKKDQG 153 >gi|226323304|ref|ZP_03798822.1| hypothetical protein COPCOM_01076 [Coprococcus comes ATCC 27758] gi|225208494|gb|EEG90848.1| hypothetical protein COPCOM_01076 [Coprococcus comes ATCC 27758] Length = 347 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 66/184 (35%), Gaps = 43/184 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 8 NDRQQEAVFYTEGPLLILAGAGSGKTRVLTHRIAWLIDQIGVNPWNILAITFTNKAAGEM 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +I+ S + V T H+ Sbjct: 68 RERVDQIVGFGSE--------------------------------------SIWVSTFHS 89 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C I++++ ++F I D + K LI++ K + +D +++ + Sbjct: 90 MCVRILRRYIDRLGYDTNFTIYDADDQKTLIKDVCK----YLQIDTKMFKERSLLSAISS 145 Query: 199 SNDE 202 + DE Sbjct: 146 AKDE 149 >gi|110800092|ref|YP_696932.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens ATCC 13124] gi|110674739|gb|ABG83726.1| ATP-dependent DNA helicase PcrA [Clostridium perfringens ATCC 13124] Length = 751 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 39/164 (23%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL S EQ A+ + A AGSGKT +L R+ ++ + P +L +T T Sbjct: 1 MDLKSLLNKEQYEAATTIDGQVLILAGAGSGKTRVLTHRIAYMIENDIKPYNILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + + Sbjct: 61 KAAGEMRERVKSLVGEVA--------------------------------------NNMW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ + + F I D K LI+ K Sbjct: 83 ISTFHSSCVRILRREIDKLGYSKDFTIYDSSDQKTLIKLVMKEL 126 >gi|311696294|gb|ADP99167.1| UvrD/REP helicase [marine bacterium HP15] Length = 721 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 73/198 (36%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ID ++ + E + A V A AGSGKT +LV R+ L+ + P+ +L Sbjct: 2 DVSHIIDPLNDAQREAVTAQ--NDHLLVLAGAGSGKTRVLVHRIAWLMTVDRVPPTGILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM +R+ +++ + Sbjct: 60 VTFTNKAAKEMRYRIEQMMDIPAR------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GL T H +++ +A + +F + D + +LI+ + +D ++ Sbjct: 84 --GLWFGTFHGIAHRLLRSHWKDAGLPENFQVLDSDDQLRLIKRVMREN----QIDESKW 137 Query: 188 LKKAFYEILEISNDEDIE 205 K + DE + Sbjct: 138 PPKQAQWFISSQKDEGLR 155 >gi|323526768|ref|YP_004228921.1| UvrD/REP helicase [Burkholderia sp. CCGE1001] gi|323383770|gb|ADX55861.1| UvrD/REP helicase [Burkholderia sp. CCGE1001] Length = 787 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMSRLSALLPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLS----AIKRLMKGLNIDDEKYPAKNL 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVD 185 >gi|218510905|ref|ZP_03508783.1| UvrD/REP helicase [Rhizobium etli Brasil 5] Length = 318 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 67/169 (39%), Gaps = 7/169 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + S RS V A AGSGKT ++ R+ +L P + +T T+ AA+ Sbjct: 8 LKDDGARRNAISGHDRSILVEAGAGSGKTAVMAGRIAVMLAQGVAPRAIAAVTFTELAAS 67 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV + +T + + I R L+ + TI Sbjct: 68 ELLSRVRDFVTDLA-------AGHIAPELRVGLPDGLSQAQRDNLVVASAAIDEITCSTI 120 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 H FC+ +++ +P EA+I + D QS + E L + + Sbjct: 121 HGFCQRLIKPYPAEADIDPGATVMDRNQSDLIFLEIVDDWLRERLSGDQ 169 >gi|91784462|ref|YP_559668.1| ATP-dependent DNA helicase UvrD [Burkholderia xenovorans LB400] gi|91688416|gb|ABE31616.1| ATP-dependent DNA helicase UvrD [Burkholderia xenovorans LB400] Length = 783 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMSRLSALLPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLS----AIKRLMKGLNIDDEKYPAKNL 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVD 185 >gi|126662607|ref|ZP_01733606.1| ATP-dependent helicase [Flavobacteria bacterium BAL38] gi|126625986|gb|EAZ96675.1| ATP-dependent helicase [Flavobacteria bacterium BAL38] Length = 1062 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 78/172 (45%), Gaps = 10/172 (5%) Query: 38 ANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 A+AGSGKT+ L + L++L + +L +T T A EM R++ + +S S Sbjct: 11 ASAGSGKTYTLTKEYLKILFLASNDDAYRKILAITFTNKAVEEMKSRIVSSLYEFSIDST 70 Query: 95 EILSAEITK---IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 + E+ K + K + K++ ++ I+ + TI F +++ F + Sbjct: 71 SDKAMELLKDVSAETKLSIATLKDKSKAIIKNIIHNYAAFDISTIDKFTHKVIRTFAQDL 130 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 N+ +F ++ E S L++EA ++ D N L K E + D+D Sbjct: 131 NLPPNFEVSLETDS--LLQEAIDLVISKAGDDVN--LTKLLIEFSKEKTDDD 178 >gi|187924773|ref|YP_001896415.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN] gi|187715967|gb|ACD17191.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN] Length = 783 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMSRLSALLPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLS----AIKRLMKGLNIDDEKYPAKNL 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVD 185 >gi|326336039|ref|ZP_08202215.1| UvrD/REP helicase subfamily [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691836|gb|EGD33799.1| UvrD/REP helicase subfamily [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 1066 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 27/222 (12%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +A+AGSGKT LV+ LRL+LA + +LL +T T A EM RV+ + +S Sbjct: 10 NASAGSGKTFTLVKSFLRLILATKNVEAYKSLLAITFTNKAVNEMKERVINKLLLFSTSD 69 Query: 94 DEILSAEIT----------KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 EI + + + +++ +L IL G + TI F + + Sbjct: 70 QEIQEEDKKPSKDPMFRQLAREIGLTFEQLRERSKKVLNYILHNYAGFTIVTIDGFNQRL 129 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI----LEIS 199 ++ F + + +F + E L+ A ++ L + N++L K E +E Sbjct: 130 IRSFAFDLKLNPNFEVFLETD--DLLRLAIENLLKK--TEENKKLTKFLLEFSKDKIEED 185 Query: 200 NDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 DIE + +I +L+ Y + +++ +K L Sbjct: 186 KSWDIEEELFEIA------RLLTNENHYPYVQELKDKELEDF 221 >gi|312866102|ref|ZP_07726323.1| UvrD/REP helicase [Streptococcus downei F0415] gi|311098506|gb|EFQ56729.1| UvrD/REP helicase [Streptococcus downei F0415] Length = 451 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 88/234 (37%), Gaps = 31/234 (13%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 E ++ + + +T + + VSA+AGSGKT ++V+R+L L + L Sbjct: 21 ELAKEQERLPRTPEQIQAIYSNGTNILVSASAGSGKTFVMVERILDRLKRGDSINQLFIS 80 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA E+ R+ + +T + SD++ +HL L Sbjct: 81 TFTVKAAGELKERLEKKLTQ------------------EIAATSDLTLKQHL-SEQLANL 121 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLD-NNE 186 + T+ AF + ++ + I+ +F I D+ + L +E AS M + Sbjct: 122 ATADIGTMDAFSQKLVNTYGYSLGISPNFRILQDQSEQASLKKEVYDDLFASYMAGTEGQ 181 Query: 187 ELKKAFYEILEISND-EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 ++ + D + +L+ I F S + +E L Sbjct: 182 TFRRLVRNFIGRGKDSKGFRSLVDSI---------YQFSQSTANPKNWLEDVLL 226 >gi|251782155|ref|YP_002996457.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390784|dbj|BAH81243.1| ATP-dependent nuclease subunit A [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 1210 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 83/224 (37%), Gaps = 27/224 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++V+R+L +L L T T AA E+ Sbjct: 30 TPEQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSVDRLFISTFTVKAATELR 89 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + + A + + L + L L+ + T+ AF Sbjct: 90 ERIEKKLYAEIAKTSDSL-------------------LKAYLTDQLQALSQADIGTMDAF 130 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ ++ I+ F I D+ + L + M ++ L KA + Sbjct: 131 AQKVLIRYGYSIGISPQFRIMQDKAEQDILKRDVFSKLFEEFMTQDDPSLFKALVK--NF 188 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 S + + +++ F S ++ +E++ A Sbjct: 189 SGNRKDASSFREVV-----YSCYAFSQSTENPKQWLEETFLKAA 227 >gi|225376675|ref|ZP_03753896.1| hypothetical protein ROSEINA2194_02317 [Roseburia inulinivorans DSM 16841] gi|225211558|gb|EEG93912.1| hypothetical protein ROSEINA2194_02317 [Roseburia inulinivorans DSM 16841] Length = 760 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 73/221 (33%), Gaps = 43/221 (19%) Query: 20 TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +Q A + A AGSGKT +L R L+ +P ++ +T T AA E Sbjct: 11 LNEQQREAVFHTEGPVLILAGAGSGKTRVLTHRTAYLIEEKGVNPYNIMAITFTNKAAGE 70 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ +++ S + V T H Sbjct: 71 MRERIDQLVGYGSE--------------------------------------SIWVSTFH 92 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 + C I+++ ++F I D + K L+++ K + L A + + Sbjct: 93 STCVRILRRHIDRIGFDTNFTIYDSDDQKTLMKDICKRLNVDTKIYKERSLLAAISKAKD 152 Query: 198 ISNDEDIETLISDI---ISNRTALKLIFFFFSYLWRRKIIE 235 D +L + + R ++ + L R ++ Sbjct: 153 ELVDPQEFSLRAAASGDFAKRKQAEIYREYQDALRRNNALD 193 >gi|220927829|ref|YP_002504738.1| ATP-dependent DNA helicase PcrA [Clostridium cellulolyticum H10] gi|219998157|gb|ACL74758.1| ATP-dependent DNA helicase PcrA [Clostridium cellulolyticum H10] Length = 785 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 45/201 (22%), Positives = 71/201 (35%), Gaps = 52/201 (25%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL++ EQ A + A AGSGKT +L R+ L+ +PS +L +T T Sbjct: 1 MDLLNGLNKEQKEAVLHNEGPLLILAGAGSGKTRVLTHRIAYLIEQHGIYPSNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +I S + Sbjct: 61 NKAAREMKERIAGLIGDLS--------------------------------------NDM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS------------TLAS 179 V T H+ C I+++ + F I D + + +I+E K L + Sbjct: 83 WVGTFHSICIRILRRDIEKLGYDRSFVIYDTQDQQVVIKECIKELSINEKNFPPKSVLET 142 Query: 180 IMLDNNEELKKAFYEILEISN 200 I +E + YE L S+ Sbjct: 143 IGKQKDELIDAVHYEKLYASD 163 >gi|315022895|gb|EFT35919.1| ATP-dependent DNA helicase UvrD/PcrA [Riemerella anatipestifer RA-YM] gi|325336848|gb|ADZ13122.1| Superfamily I DNA and RNA helicase [Riemerella anatipestifer RA-GD] Length = 779 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 55/165 (33%), Gaps = 38/165 (23%) Query: 13 TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 +D + Q A V A AGSGKT +L R+ L+ P +L LT T Sbjct: 1 MVDYLKGLNEAQYKAVTTIQGPLMVLAGAGSGKTRVLTMRIAHLITNGVDPFNILALTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +++ S L Sbjct: 61 NKAAREMKERIAKVVGESDAKS-------------------------------------L 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ S+F I D + + ++++ K Sbjct: 84 WMGTFHSVFARILRSEAHYLGFPSNFTIYDSQDALNVLKKVIKDL 128 >gi|257066035|ref|YP_003152291.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548] gi|256797915|gb|ACV28570.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548] Length = 1121 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 83/223 (37%), Gaps = 32/223 (14%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 + +K ++ ++ VSA AGSGKT +LV R++RLL+ + + + +T T A+ Sbjct: 4 MEFSKDQKAAIETRGKNIIVSAAAGSGKTSVLVTRIIRLLIEDRKDIGSFIIVTFTNKAS 63 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + L + L+ +++T Sbjct: 64 VEMKDRIRTALEEELKKKGSDL---------------------KFIKDQLKNLKHAQIKT 102 Query: 136 IHAFCEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 +H+FC ++++ F +++ +F + E + L A + + + Sbjct: 103 LHSFCADMLRENFYYFDDLSPNFKVISENTATILKSNAIDEVFDKRYEQMDPAFENFLHN 162 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 +D + +I LK + + ++++ Sbjct: 163 FATNKSDSGAKDII---------LKTYEKIMAEVRPIAWLDQA 196 >gi|159030780|emb|CAO88458.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 773 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 66/170 (38%), Gaps = 19/170 (11%) Query: 13 TIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 T D + Q Q +A + V A AGSGKT L R+ L+ P +L +T Sbjct: 4 TADYLEQLNPSQRIAVEHFCGPLLVVAGAGSGKTSALTYRIAHLIRHHGVDPENILAVTF 63 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-G 129 T AA EM R+ + + E+ + + + L + Sbjct: 64 TNKAAREMKTRIEKTFAQQKAQENYGQRLELLEEY----------EQKKLFSQVYRNYTK 113 Query: 130 GLKVQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAK 173 L + T H+ C I++ ++ E + +F+I DE ++ L++ Sbjct: 114 KLWIGTFHSLCGRILRYDINKYQDEYGHSWQRNFSIMDESDAQSLVKNIV 163 >gi|153809769|ref|ZP_01962437.1| hypothetical protein RUMOBE_00150 [Ruminococcus obeum ATCC 29174] gi|149833947|gb|EDM89027.1| hypothetical protein RUMOBE_00150 [Ruminococcus obeum ATCC 29174] Length = 744 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 73/189 (38%), Gaps = 45/189 (23%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 D ++ + E +L +D + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 6 DTLNDRQKEAVLHTD--GPLLILAGAGSGKTRVLTHRIAYLIAEKGVNPWNILAITFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +I + G + V Sbjct: 64 AAHEMRERVDKIAGSEG--------------------------------------GSVWV 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ C I+++ ++F I D + K LI+E + + +D + ++A Sbjct: 86 STFHSTCVRILRRHIDRLGYDNNFTIYDADDQKTLIKEICR----KMNIDTKKVKERALL 141 Query: 194 EILEISNDE 202 + + DE Sbjct: 142 AQISHAKDE 150 >gi|83643631|ref|YP_432066.1| DNA-dependent helicase II [Hahella chejuensis KCTC 2396] gi|83631674|gb|ABC27641.1| Superfamily I DNA and RNA helicase [Hahella chejuensis KCTC 2396] Length = 721 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 74/194 (38%), Gaps = 45/194 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 +D ++ + E + AS R+ V A AGSGKT +LV R+ L+ + ++ +T T Sbjct: 6 VLDPLNDAQREAVTAS--ARNLLVLAGAGSGKTRVLVHRMAWLIQVERIGAHAIMAVTFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ + G+ Sbjct: 64 NKAAREMRERVESLLHIPTR--------------------------------------GM 85 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ +++ EA + +F + D + ++++ K + + LD ++ + Sbjct: 86 WLGTFHSLAHRLLRAHWREAGLPENFQVIDSDDQQRML----KRVIRELGLDESKWPARQ 141 Query: 192 FYEILEISNDEDIE 205 + DE + Sbjct: 142 AQYFINSQKDEGLR 155 >gi|72162979|ref|YP_290636.1| ATP-dependent DNA helicase PcrA [Thermobifida fusca YX] gi|71916711|gb|AAZ56613.1| ATP-dependent DNA helicase PcrA [Thermobifida fusca YX] Length = 754 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 74/225 (32%), Gaps = 40/225 (17%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 + ++ +++ ++ + A AGSGKT +L R+ LL PS +L +T Sbjct: 6 QLLEGLNEL--QRAAVLHHGSPLLIIAGAGSGKTRVLTHRIAYLLAERGVRPSEVLAITF 63 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV ++ T Sbjct: 64 TNKAAAEMKERVERLLGE-------------------------------------RTASA 86 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + V T H+ C I+++ S F I D S++L++ + + Sbjct: 87 MWVMTFHSACVRILRREAARLGYPSSFTIYDSADSQRLMQLVCRELDLDPKRFPPKSFSA 146 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 + D D ++ + R + + L+ ++ Sbjct: 147 QVSSLKNELVDYDTFAGRAETVQERALAEAYQLYQQRLYEAGAMD 191 >gi|313205710|ref|YP_004044887.1| uvrd/rep helicase [Riemerella anatipestifer DSM 15868] gi|312445026|gb|ADQ81381.1| UvrD/REP helicase [Riemerella anatipestifer DSM 15868] Length = 779 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 55/165 (33%), Gaps = 38/165 (23%) Query: 13 TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 +D + Q A V A AGSGKT +L R+ L+ P +L LT T Sbjct: 1 MVDYLKGLNEAQYKAVTTIQGPLMVLAGAGSGKTRVLTMRIAHLITNGVDPFNILALTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +++ S L Sbjct: 61 NKAAREMKERIAKVVGESDAKS-------------------------------------L 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ S+F I D + + ++++ K Sbjct: 84 WMGTFHSVFARILRSEAHYLGFPSNFTIYDSQDALNVLKKVIKDL 128 >gi|256371278|ref|YP_003109102.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331] gi|256007862|gb|ACU53429.1| UvrD/REP helicase [Acidimicrobium ferrooxidans DSM 10331] Length = 715 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 40/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 E ++ ++ ++ E + A P V A AGSGKT +L +RV LL A PS++L +T T Sbjct: 4 ELLEDLNPSQREAVSA--PIGPVLVLAGAGSGKTRVLTRRVAWLLAAGERPSSILAITFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM+ RV ++ GL Sbjct: 62 NKAAGEMAERVRSLVGP--------------------------------------NADGL 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HA C +++ P + S ++I D++ +++L+E + Sbjct: 84 WVSTFHAACARMLRLHPELGGLRSGWSIYDQDDARRLLERTIRRL 128 >gi|326334139|ref|ZP_08200365.1| ATP-dependent DNA helicase PcrA [Nocardioidaceae bacterium Broad-1] gi|325948064|gb|EGD40178.1| ATP-dependent DNA helicase PcrA [Nocardioidaceae bacterium Broad-1] Length = 819 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 93/233 (39%), Gaps = 50/233 (21%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E +D +++ ++ V A AGSGKT +L +R+ L+ AHP ++L +T Sbjct: 38 ELLDGLNE--PQKAAVQHQGAPLLVVAGAGSGKTRVLTRRIAWLISQRGAHPGSILAITF 95 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV ++ + + Sbjct: 96 TNKAAAEMKQRVEALVGKRARI-------------------------------------- 117 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELK 189 + V T H+ C I+++ + + S+F+I D + K+L++ L+ + LD + Sbjct: 118 MWVSTFHSACVRILRKEIDKVGLKSNFSIYDAQDQKRLMQL----VLSDLDLDPRHYQPG 173 Query: 190 KAFYEILEISND-EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 + + + N+ D+E D R L+ + +++++ + + Sbjct: 174 QVLNWVSDQKNELRDVEAAEKDA---RNHLEQTYVAAYKEYQKRLRQANALDF 223 >gi|297516694|ref|ZP_06935080.1| DNA-dependent helicase II [Escherichia coli OP50] Length = 695 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 43/172 (25%) Query: 35 WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 V A AGSGKT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 1 MVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT----- 55 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + GG+ V T H +++ ++AN+ Sbjct: 56 ---------------------------------SQGGMWVGTFHGLAHRLLRAHHMDANL 82 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 F I D E +L+ K + ++ LD + + + DE + Sbjct: 83 PQDFQILDSEDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLR 130 >gi|305681998|ref|ZP_07404802.1| putative ATP-dependent DNA helicase PcrA [Corynebacterium matruchotii ATCC 14266] gi|305658471|gb|EFM47974.1| putative ATP-dependent DNA helicase PcrA [Corynebacterium matruchotii ATCC 14266] Length = 898 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 83/230 (36%), Gaps = 43/230 (18%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DLI+ +Q A + + S + A AGSGKT +L +R+ LL + P +L +T T Sbjct: 94 DLIADLNPQQRAAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLLRMRGVAPGQILAITFTN 153 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV++++ + + Sbjct: 154 KAAAEMRDRVIDLVGPTAT--------------------------------------RMW 175 Query: 133 VQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H+ C I+++ + ++F I D + SK+L+ K + L A Sbjct: 176 VATFHSACVRILREQAHLLPGLNTNFTIYDADDSKRLLGMIAKDLQINAQKFPPRLLAAA 235 Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 + D D + + + R ++R++ + Sbjct: 236 ISALKTELTDPDAAS--DEAAATRNPFDRTIAEVYTEYQRRLRAANALDF 283 >gi|222152848|ref|YP_002562025.1| ATP-dependent exonuclease subunit A [Streptococcus uberis 0140J] gi|251764571|sp|B9DRV0|ADDA_STRU0 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|222113661|emb|CAR41583.1| putative ATP-dependent exonuclease subunit A [Streptococcus uberis 0140J] Length = 1220 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 87/222 (39%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++V+R++ +L + T T AA E+ Sbjct: 29 TPEQIEAIYTNGQNILVSASAGSGKTFVMVERIIDKVLRGISIENMFISTFTVKAANELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + + ++D+ + + L ++ + T+ AF Sbjct: 89 ERLEKKLREGILMTDDP-------------------EMKAYLNDQMQAIALADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ + I F I D+ + + L E KS + M ++ ++ F +++ Sbjct: 130 TQKLLNEHGYLLGIPPKFRIMQDKSEQELLKNEIYKSLFENYMASDHSQV---FLRLVKN 186 Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 + D S R + K+ F S ++ +E + Sbjct: 187 FSGNR-----KDSKSFRDQVYKIYQFSQSTENPKQWLENNFL 223 >gi|154249214|ref|YP_001410039.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1] gi|154153150|gb|ABS60382.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1] Length = 1130 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 93/216 (43%), Gaps = 27/216 (12%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPS---TLLCLTHTKAAAAEMSHRV 82 +P + ++SA+AG+GKT+ L + +L +P +L +T T AA EM R+ Sbjct: 15 NPNCNYFISASAGTGKTYTLTNYYMGILEYYEKENNPDIVDGILAVTFTNKAANEMKERI 74 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + + ++I S+ ++ + K + + TI +FC Sbjct: 75 MNKVR------EKITSSSVSNLAYWK--------------RVYSNMSRAVISTIDSFCRR 114 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 ++ + + A + +F I ++ + K+I+ A + + I E+L+ +L + Sbjct: 115 VLIEQNIYAGVDPNFTIINDLKQLKIIDSASRQAM-EIAFKVYEDLEIPLSPMLSSERRK 173 Query: 203 DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 IE I ++ + ++ +F +WR K + + Sbjct: 174 RIEGYIKELKEIKDSIIDLFELVGDVWRVKGFVEDI 209 >gi|182436526|ref|YP_001824245.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777148|ref|ZP_08236413.1| ATP-dependent DNA helicase PcrA [Streptomyces cf. griseus XylebKG-1] gi|178465042|dbj|BAG19562.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657481|gb|EGE42327.1| ATP-dependent DNA helicase PcrA [Streptomyces cf. griseus XylebKG-1] Length = 813 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 75/205 (36%), Gaps = 45/205 (21%) Query: 3 YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAH 61 + + + +D ++ ++ + A AGSGKT +L R+ LL H Sbjct: 56 HPRPAIDSAALLDGLN--TEQRAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLAERGTH 113 Query: 62 PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121 P +L +T T AA EM RV +++ + Sbjct: 114 PGQILAITFTNKAAGEMKERVEQLVGPRA------------------------------- 142 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 + V T H+ C I+++ + TS F+I D SK+L+ + + Sbjct: 143 -------NAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRD----LD 191 Query: 182 LDNNEELKKAFYEILEISNDEDIET 206 LD + K+F + +E I+ Sbjct: 192 LDPKQFPPKSFTAKVSNLKNELIDE 216 >gi|229814925|ref|ZP_04445263.1| hypothetical protein COLINT_01968 [Collinsella intestinalis DSM 13280] gi|229809412|gb|EEP45176.1| hypothetical protein COLINT_01968 [Collinsella intestinalis DSM 13280] Length = 1179 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 66/171 (38%), Gaps = 35/171 (20%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCL 68 +DL + ++ + + R +VSA AGSGKT L +R+L L + P +L + Sbjct: 1 MDLSTLMPQQRDIVTTLDRPLFVSAGAGSGKTFTLTRRILWALSPESGPFIRNLDRVLAI 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T TK AAAE+ RV + I Sbjct: 61 TFTKDAAAEIRERVRGALIEEGMGD------------------------------IALQV 90 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 + TIH C I++ LE + F++ DE S L++ A + +A Sbjct: 91 DDAWISTIHGMCSRILRAHALELGLDPEFSVLDESVSGPLMDRAVDAVIAR 141 >gi|213961804|ref|ZP_03390070.1| UvrD/REP family helicase [Capnocytophaga sputigena Capno] gi|213955593|gb|EEB66909.1| UvrD/REP family helicase [Capnocytophaga sputigena Capno] Length = 1060 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 90/182 (49%), Gaps = 13/182 (7%) Query: 30 PTRSAWV-SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEI 85 P+ + + +A+AGSGKT+ LV+ L+++L + +P LL +T T A EM +R++E+ Sbjct: 3 PSANYTIYNASAGSGKTYSLVKAYLQIILGSKYPDLFRQLLAITFTNKAVFEMKNRIIEL 62 Query: 86 ITAWSH----LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + +S + + +E+ K K P++ ++ L IL + TI F Sbjct: 63 LGVFSEDKMLTNPHPMFSELAKDL-KLPDEELRMRSAKTLEHILHNYAAFNISTIDGFNH 121 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 ++++F + ++ F + + SK L+E A + ++ N+ EL + + D Sbjct: 122 QLIRRFSHDLHLNPFFEV--QLDSKALLERAVDNLMSKA--GNDTELTQLLIDFANEKID 177 Query: 202 ED 203 +D Sbjct: 178 DD 179 >gi|269838114|ref|YP_003320342.1| UvrD/REP helicase [Sphaerobacter thermophilus DSM 20745] gi|269787377|gb|ACZ39520.1| UvrD/REP helicase [Sphaerobacter thermophilus DSM 20745] Length = 1125 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 21/205 (10%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77 + + + + R+ +V A AG+GKT +LV R++ +L A L+ +T T+ AAAE Sbjct: 7 DQATREAIRTALDRNFFVEAGAGTGKTTVLVDRIVAILRNGHATVDELVVITFTRLAAAE 66 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 ++ RV E + ++ + +++TIH Sbjct: 67 LATRVRERLEETRDTTESEEERARLEEALY-------------------ALPRARIETIH 107 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AF ++++ P+EA + F D+ + +EA + LA+++ + E +A + L Sbjct: 108 AFAAGLLRERPVEAGLDPGFEEMDDLSASLAFDEAYQDWLATLLNPEDGERPEAVWRALN 167 Query: 198 ISND-EDIETLISDIISNRTALKLI 221 D + ++ + +R+ L L+ Sbjct: 168 RGLDLRHLREVVEQVHHHRSLLPLV 192 >gi|107022515|ref|YP_620842.1| UvrD/REP helicase [Burkholderia cenocepacia AU 1054] gi|105892704|gb|ABF75869.1| ATP-dependent DNA helicase UvrD [Burkholderia cenocepacia AU 1054] Length = 846 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 82/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 62 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 121 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 122 KAAREMMARLSAMMPIDTR--------------------------------------GMW 143 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 144 IGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 199 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 200 QYFINNAKEQGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVD 244 >gi|289625507|ref|ZP_06458461.1| DNA-dependent helicase II [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649762|ref|ZP_06481105.1| DNA-dependent helicase II [Pseudomonas syringae pv. aesculi str. 2250] gi|330870933|gb|EGH05642.1| DNA-dependent helicase II [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330986942|gb|EGH85045.1| DNA-dependent helicase II [Pseudomonas syringae pv. lachrymans str. M301315] Length = 727 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 +++ + V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM H Sbjct: 15 AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ +P G+ V T H Sbjct: 75 RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + F I D + ++L K + + LD + + Sbjct: 97 HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152 Query: 201 DEDIE 205 DE + Sbjct: 153 DEGLR 157 >gi|257485680|ref|ZP_05639721.1| DNA-dependent helicase II [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011968|gb|EGH92024.1| DNA-dependent helicase II [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 727 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 +++ + V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM H Sbjct: 15 AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ +P G+ V T H Sbjct: 75 RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + F I D + ++L K + + LD + + Sbjct: 97 HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152 Query: 201 DEDIE 205 DE + Sbjct: 153 DEGLR 157 >gi|166033310|ref|ZP_02236139.1| hypothetical protein DORFOR_03036 [Dorea formicigenerans ATCC 27755] gi|166027667|gb|EDR46424.1| hypothetical protein DORFOR_03036 [Dorea formicigenerans ATCC 27755] Length = 763 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 41/168 (24%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66 +++ D ++ + E + A AGSGKT +L R+ L+ +P +L Sbjct: 9 EKNLNIYDTLNDKQKE--AVFHTEGPLLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNIL 66 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AAAEM RV ++ S Sbjct: 67 AITFTNKAAAEMRERVDNLVGFGSE----------------------------------- 91 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + V T H+ C I+++ ++F I D + K L+ + K Sbjct: 92 ---SIWVSTFHSMCVRILRRHIALLGYDTNFTIYDTDDQKTLMRDVCK 136 >gi|88705431|ref|ZP_01103142.1| DNA helicase II [Congregibacter litoralis KT71] gi|88700521|gb|EAQ97629.1| DNA helicase II [Congregibacter litoralis KT71] Length = 717 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 72/199 (36%), Gaps = 45/199 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ + ++ + + + A + + V A AGSGKT +LV R+ L+ P +L Sbjct: 2 DVSDILTGLNDAQRDAVAAE--SGNMLVLAGAGSGKTRVLVHRIAWLIRAEGLSPHAVLA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ ++ +H Sbjct: 60 VTFTNKAAREMRGRIEHMLQIPTH------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + V T H +++ EA + +F I D + +L++ + + LD + Sbjct: 84 --SMWVGTFHGLAHRLLKTHWKEARLPQNFQILDSDDQLRLVKRVCR----ELQLDESRW 137 Query: 188 LKKAFYEILEISNDEDIET 206 K + DE + Sbjct: 138 PPKQAQWYINAQKDEGLRA 156 >gi|153930858|ref|YP_001382829.1| recombination helicase AddA [Clostridium botulinum A str. ATCC 19397] gi|153935206|ref|YP_001386396.1| recombination helicase AddA [Clostridium botulinum A str. Hall] gi|251764508|sp|A7FPG0|ADDA_CLOB1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|152926902|gb|ABS32402.1| ATP-dependent nuclease subunit A [Clostridium botulinum A str. ATCC 19397] gi|152931120|gb|ABS36619.1| ATP-dependent nuclease subunit A [Clostridium botulinum A str. Hall] Length = 1279 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 79/201 (39%), Gaps = 26/201 (12%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 + T ++ + V+A AG+GKT +LVQR++ +L P LL +T Sbjct: 1 MSGTKWTDEQRQAIFTKDCNLLVAAGAGAGKTAVLVQRIIEKILDKGEPIDIDKLLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAAEM R+ + I+ K + P + K LL Sbjct: 61 TNAAAAEMRERIGDAIS---------------KGLDEDPESKVLRKQLTLL-------NK 98 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + TIH+FC +++ I +F I DE + + +EA + NE+ Sbjct: 99 SNIMTIHSFCLQVIKNNFHTMEIDPNFRICDETEGILMKQEAIDELFDELYEIENEDFIN 158 Query: 191 AFYEILEISNDEDIETLISDI 211 D ++ ++ ++ Sbjct: 159 LVESYAS-RKDTRLQEVVLEL 178 >gi|148378439|ref|YP_001252980.1| recombination helicase AddA [Clostridium botulinum A str. ATCC 3502] gi|251764512|sp|A5HYY0|ADDA_CLOBH RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|148287923|emb|CAL81989.1| ATP-dependent nuclease subunit A [Clostridium botulinum A str. ATCC 3502] Length = 1279 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 79/201 (39%), Gaps = 26/201 (12%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 + T ++ + V+A AG+GKT +LVQR++ +L P LL +T Sbjct: 1 MSGTKWTDEQRQAIFTKDCNLLVAAGAGAGKTAVLVQRIIEKILDKGEPIDIDKLLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAAEM R+ + I+ K + P + K LL Sbjct: 61 TNAAAAEMRERIGDAIS---------------KGLDEDPESKVLRKQLTLL-------NK 98 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + TIH+FC +++ I +F I DE + + +EA + NE+ Sbjct: 99 SNIMTIHSFCLQVIKNNFHTMEIDPNFRICDETEGILMKQEAIDELFDELYEIENEDFIN 158 Query: 191 AFYEILEISNDEDIETLISDI 211 D ++ ++ ++ Sbjct: 159 LVESYAS-RKDTRLQEVVLEL 178 >gi|228473051|ref|ZP_04057808.1| UvrD/REP family helicase [Capnocytophaga gingivalis ATCC 33624] gi|228275633|gb|EEK14410.1| UvrD/REP family helicase [Capnocytophaga gingivalis ATCC 33624] Length = 1071 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 83/194 (42%), Gaps = 21/194 (10%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +A+AGSGKT LV+ L+L+LA + TLL +T T A EM RV+ + +S Sbjct: 8 NASAGSGKTFTLVKSFLKLILATKNVEAYKTLLAITFTNKAVNEMKERVINQLLLFSTPD 67 Query: 94 DEILSAEITK----------IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + E + ++ +++ +L IL G + TI F + + Sbjct: 68 TLVEEGEKKASDDIMFVQLAQELLLSHEELQERSQKVLKHILHNYAGFTITTIDGFNQRL 127 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI----LEIS 199 ++ F + + +F + E L+ A ++ + N+ L K E +E Sbjct: 128 IRSFAFDLKLNPNFEVFLETD--DLLRLAIENLFKKA--NENQLLTKLLLEFSRDKIEED 183 Query: 200 NDEDIETLISDIIS 213 D DIET + DI Sbjct: 184 KDWDIETELFDIAK 197 >gi|330880966|gb|EGH15115.1| DNA-dependent helicase II [Pseudomonas syringae pv. glycinea str. race 4] Length = 727 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 +++ + V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM H Sbjct: 15 AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ +P G+ V T H Sbjct: 75 RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + F I D + ++L K + + LD + + Sbjct: 97 HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152 Query: 201 DEDIE 205 DE + Sbjct: 153 DEGLR 157 >gi|270157203|ref|ZP_06185860.1| DNA helicase II [Legionella longbeachae D-4968] gi|289164396|ref|YP_003454534.1| DNA helicase II [Legionella longbeachae NSW150] gi|269989228|gb|EEZ95482.1| DNA helicase II [Legionella longbeachae D-4968] gi|288857569|emb|CBJ11407.1| DNA helicase II [Legionella longbeachae NSW150] Length = 721 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 70/191 (36%), Gaps = 44/191 (23%) Query: 17 ISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 +S+ Q + P + V A AGSGKT +LV R+ L+ N P +L +T T A Sbjct: 7 LSELNERQHEAVTAPLGNTLVLAGAGSGKTKVLVSRIAWLVAEQNLSPHGILAVTFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ I+ GL V Sbjct: 67 AGEMRARLNNILNMPVM--------------------------------------GLWVG 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H C ++++ EA++ F I D E ++I K +A++ LD + K Sbjct: 89 TFHGLCHRLLRRHYKEAHLPELFHILDTEDQARMI----KRVIAALNLDPEQWPVKQAQS 144 Query: 195 ILEISNDEDIE 205 + DE Sbjct: 145 FINGQKDEGTR 155 >gi|330952409|gb|EGH52669.1| DNA-dependent helicase II [Pseudomonas syringae Cit 7] gi|330970255|gb|EGH70321.1| DNA-dependent helicase II [Pseudomonas syringae pv. aceris str. M302273PT] Length = 727 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 +++ + V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM H Sbjct: 15 AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ +P G+ V T H Sbjct: 75 RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + F I D + ++L K + + LD + + Sbjct: 97 HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152 Query: 201 DEDIE 205 DE + Sbjct: 153 DEGLR 157 >gi|282860904|ref|ZP_06269970.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. ACTE] gi|282564640|gb|EFB70176.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. ACTE] Length = 815 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 61/169 (36%), Gaps = 41/169 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 + + +D ++ ++ + A AGSGKT +L R+ LL HP +L Sbjct: 65 DSAALLDGLN--TEQRAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLAERGVHPGQILA 122 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV +++ + Sbjct: 123 ITFTNKAAGEMKERVGDLVGPRA------------------------------------- 145 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ TS F+I D SK+L+ + Sbjct: 146 -NAMWVMTFHSACVRILRRESKLLGFTSSFSIYDAADSKRLMALVCRDL 193 >gi|330937394|gb|EGH41379.1| DNA-dependent helicase II [Pseudomonas syringae pv. pisi str. 1704B] Length = 727 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 +++ + V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM H Sbjct: 15 AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ +P G+ V T H Sbjct: 75 RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + F I D + ++L K + + LD + + Sbjct: 97 HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152 Query: 201 DEDIE 205 DE + Sbjct: 153 DEGLR 157 >gi|330890591|gb|EGH23252.1| DNA-dependent helicase II [Pseudomonas syringae pv. mori str. 301020] Length = 727 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 +++ + V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM H Sbjct: 15 AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ +P G+ V T H Sbjct: 75 RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + F I D + ++L K + + LD + + Sbjct: 97 HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152 Query: 201 DEDIE 205 DE + Sbjct: 153 DEGLR 157 >gi|288925108|ref|ZP_06419044.1| ATP-dependent DNA helicase PcrA [Prevotella buccae D17] gi|288338298|gb|EFC76648.1| ATP-dependent DNA helicase PcrA [Prevotella buccae D17] Length = 819 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 68/180 (37%), Gaps = 38/180 (21%) Query: 13 TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 +DL+S+ Q A + + V A AGSGKT +L ++ LL P +L LT T Sbjct: 1 MVDLLSELNDSQREAVEYIDGPSLVIAGAGSGKTRVLTYKIAYLLQRGVRPYNILALTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM R+ +++ L L Sbjct: 61 NKAAAEMKARIGKLVGERDAL-------------------------------------AL 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 ++ T H+ I++ S+F I DE S+ LI+ K A + ++ K A Sbjct: 84 RMGTFHSVFSRILRVEAAHIGYNSNFTIYDESDSRSLIKTIVKELAAGNEKMDEKQYKPA 143 >gi|33152168|ref|NP_873521.1| DNA-dependent helicase II [Haemophilus ducreyi 35000HP] gi|33148390|gb|AAP95910.1| DNA helicase II [Haemophilus ducreyi 35000HP] Length = 729 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 37/158 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + + + A P + V A AGSGKT +L R+ L+ + + +++L Sbjct: 2 DFSLLLDGLNDKQRQAVSA--PLGNYLVLAGAGSGKTRVLTHRIAWLMRVEHISEASILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM +R+ ++ S Sbjct: 60 VTFTNKAAAEMRNRIEYTLSMSSQ----------------------------------HR 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G+ V T H+ +++ L+AN+ F I D E Sbjct: 86 LFGMWVGTFHSIAHRLLRSHYLDANLPQDFQIMDTEDQ 123 >gi|320321765|gb|EFW77863.1| DNA-dependent helicase II [Pseudomonas syringae pv. glycinea str. B076] gi|320331515|gb|EFW87455.1| DNA-dependent helicase II [Pseudomonas syringae pv. glycinea str. race 4] Length = 727 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 +++ + V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM H Sbjct: 15 AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ +P G+ V T H Sbjct: 75 RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + F I D + ++L K + + LD + + Sbjct: 97 HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152 Query: 201 DEDIE 205 DE + Sbjct: 153 DEGLR 157 >gi|289677452|ref|ZP_06498342.1| DNA-dependent helicase II [Pseudomonas syringae pv. syringae FF5] Length = 727 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 +++ + V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM H Sbjct: 15 AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ +P G+ V T H Sbjct: 75 RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + F I D + ++L K + + LD + + Sbjct: 97 HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152 Query: 201 DEDIE 205 DE + Sbjct: 153 DEGLR 157 >gi|299143270|ref|ZP_07036350.1| UvrD/REP helicase subfamily [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517755|gb|EFI41494.1| UvrD/REP helicase subfamily [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 1036 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 83/202 (41%), Gaps = 38/202 (18%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-----LANAHPSTLLCLTHTKAAAAE 77 + + + ++ +SA AG+GKT +L +R L +L +L +T+T AA E Sbjct: 8 QNIAVNTIDKNICLSAGAGTGKTKVLTERFLNILKNGNLTKGYELEEILAITYTNKAAFE 67 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M ++ ++ + L I + ++ TIH Sbjct: 68 MKSKIKGALSKSKD---------------------------NKLKDIYKFFSNAQIFTIH 100 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AFC +++++PL + F I + +++ ++ +A + L +N+ L + E+ E Sbjct: 101 AFCGELIRKYPLAVEVDPEFEICEPLEAEDILRDATNTVLKK--YENDMRLYELLMELSE 158 Query: 198 ISNDEDIETLISDIISNRTALK 219 I DI IIS LK Sbjct: 159 I----DIRKFSDAIISLYDDLK 176 >gi|269128418|ref|YP_003301788.1| ATP-dependent DNA helicase PcrA [Thermomonospora curvata DSM 43183] gi|268313376|gb|ACY99750.1| ATP-dependent DNA helicase PcrA [Thermomonospora curvata DSM 43183] Length = 768 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D ++ ++ + A AGSGKT +L R+ LL + HP+ +L +T T Sbjct: 10 LLDGLN--PQQRAAVLHTGGPLLIVAGAGSGKTRVLTHRIAYLLAERDVHPAQILAITFT 67 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ S G + Sbjct: 68 NKAAGEMRERVQALVGPRS--------------------------------------GAM 89 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ S+F+I D +++L+ + Sbjct: 90 WVMTFHSACVRILRREARRLGFPSNFSIYDAADAQRLMALVCREL 134 >gi|298489453|ref|ZP_07007464.1| ATP-dependent DNA helicase UvrD/PcrA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156027|gb|EFH97136.1| ATP-dependent DNA helicase UvrD/PcrA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 727 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 +++ + V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM H Sbjct: 15 AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ +P G+ V T H Sbjct: 75 RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + F I D + ++L K + + LD + + Sbjct: 97 HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152 Query: 201 DEDIE 205 DE + Sbjct: 153 DEGLR 157 >gi|66048289|ref|YP_238130.1| DNA-dependent helicase II [Pseudomonas syringae pv. syringae B728a] gi|63258996|gb|AAY40092.1| UvrD/REP helicase [Pseudomonas syringae pv. syringae B728a] Length = 727 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 +++ + V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM H Sbjct: 15 AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ +P G+ V T H Sbjct: 75 RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + F I D + ++L K + + LD + + Sbjct: 97 HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152 Query: 201 DEDIE 205 DE + Sbjct: 153 DEGLR 157 >gi|302336244|ref|YP_003801451.1| UvrD/REP helicase [Olsenella uli DSM 7084] gi|301320084|gb|ADK68571.1| UvrD/REP helicase [Olsenella uli DSM 7084] Length = 879 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 39/165 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71 T+DL +++ A V A AGSGKT +L R+ ++ P +L +T T Sbjct: 35 TVDLSGLNPAQRKAAETTHGPLLVLAGAGSGKTRVLTYRIAHMIADEGVRPWQVLAITFT 94 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM R+ ++ + G+ Sbjct: 95 NKAAAEMRERLGALLPGGTR--------------------------------------GM 116 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HA C ++++ +F I D++ S++L++ Sbjct: 117 WVCTFHAMCVRMLREDGELLGYQPNFTIYDDDDSRRLVKSIMADL 161 >gi|255324817|ref|ZP_05365930.1| ATP-dependent DNA helicase PcrA [Corynebacterium tuberculostearicum SK141] gi|255298117|gb|EET77421.1| ATP-dependent DNA helicase PcrA [Corynebacterium tuberculostearicum SK141] Length = 841 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 42/175 (24%) Query: 6 SFQEHSETIDLISQ-TKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLL-ANAHP 62 + SE+ D +++ +QL A + S + A AGSGKT +L +R+ L+ +P Sbjct: 30 AASSQSESPDALTEGLNPQQLEAVTHSGSPLLIVAGAGSGKTAVLTRRIAYLMRHRGVNP 89 Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122 +L +T T AAAEM RV ++ + Sbjct: 90 WEILAITFTNKAAAEMKERVGGLVGPVAE------------------------------- 118 Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I++Q + ++F I D + +++L+ K Sbjct: 119 -------RMWVSTFHSICVRILRQNAQLVPGLNTNFTIYDGDDARRLLSMIAKDM 166 >gi|237801766|ref|ZP_04590227.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806704|ref|ZP_04593408.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024625|gb|EGI04681.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027818|gb|EGI07873.1| DNA-dependent helicase II [Pseudomonas syringae pv. oryzae str. 1_6] Length = 727 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 +++ + V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM H Sbjct: 15 AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ +P G+ V T H Sbjct: 75 RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + F I D + ++L K + + LD + + Sbjct: 97 HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152 Query: 201 DEDIE 205 DE + Sbjct: 153 DEGLR 157 >gi|94499918|ref|ZP_01306454.1| DNA helicase II [Oceanobacter sp. RED65] gi|94428119|gb|EAT13093.1| DNA helicase II [Oceanobacter sp. RED65] Length = 736 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 77/198 (38%), Gaps = 45/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + +E +D ++ + E + P V A AGSGKT +LV R+ L+ + + PS+++ Sbjct: 5 DVTELLDGLNPPQREAVA--SPLNHQLVLAGAGSGKTRVLVHRIAWLMQIEHISPSSIMA 62 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV E+ + Sbjct: 63 VTFTNKAAKEMRSRVEELTGI--------------------------------------S 84 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 P L + T H+ +++ +AN++ +F + D + +LI+ + + +D Sbjct: 85 PKHLWIGTFHSLAHRLLRTHWKQANLSENFQVMDSDDQLRLIKRIVR----GLNIDEEVY 140 Query: 188 LKKAFYEILEISNDEDIE 205 K + DE + Sbjct: 141 QPKQAQWYINAQKDEGLR 158 >gi|239979932|ref|ZP_04702456.1| ATP-dependent DNA helicase II [Streptomyces albus J1074] gi|291451787|ref|ZP_06591177.1| ATP-dependent DNA helicase II [Streptomyces albus J1074] gi|291354736|gb|EFE81638.1| ATP-dependent DNA helicase II [Streptomyces albus J1074] Length = 840 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 60/167 (35%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 + +D ++ ++ + A AGSGKT +L R+ LL HP +L +T Sbjct: 69 AALLDGLND--EQRAAVVHSGSPLLIVAGAGSGKTRVLTHRIAHLLGERGVHPGQILAIT 126 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV E++ + Sbjct: 127 FTNKAAGEMKERVEELVGPRA--------------------------------------N 148 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ TS F+I D SK+L+ + Sbjct: 149 AMWVSTFHSACVRILRRESKHLGFTSSFSIYDAADSKRLMALVCRDL 195 >gi|71734750|ref|YP_277224.1| DNA-dependent helicase II [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555303|gb|AAZ34514.1| DNA helicase II [Pseudomonas syringae pv. phaseolicola 1448A] Length = 727 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 +++ + V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM H Sbjct: 15 AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ +P G+ V T H Sbjct: 75 RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + F I D + ++L K + + LD + + Sbjct: 97 HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152 Query: 201 DEDIE 205 DE + Sbjct: 153 DEGLR 157 >gi|312795642|ref|YP_004028564.1| DNA helicase II [Burkholderia rhizoxinica HKI 454] gi|312167417|emb|CBW74420.1| DNA helicase II (EC 3.6.1.-) [Burkholderia rhizoxinica HKI 454] Length = 791 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P A + A AGSGKT +L+ R+ L+ A P+ +L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLISRGEASPAGILAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ G+ Sbjct: 63 KAAREMLIRLDAMLPI--------------------------------------NTRGMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K+ Sbjct: 85 IGTFHGLCNRMLRAHYRDAGLPQAFQILDTADQLS----AIKRLMKGLNIDDEKYPPKSL 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPEQVDASDNFNRKCVELYAAYEQQCQREGVVD 185 >gi|311740890|ref|ZP_07714717.1| ATP-dependent DNA helicase PcrA [Corynebacterium pseudogenitalium ATCC 33035] gi|311304410|gb|EFQ80486.1| ATP-dependent DNA helicase PcrA [Corynebacterium pseudogenitalium ATCC 33035] Length = 841 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 69/175 (39%), Gaps = 42/175 (24%) Query: 6 SFQEHSETIDLISQ-TKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLL-ANAHP 62 + SE+ D +++ +QL A + S + A AGSGKT +L +R+ L+ +P Sbjct: 30 AASPQSESPDALTEGLNPQQLEAVTHSGSPLLIVAGAGSGKTAVLTRRIAYLMRHRGVNP 89 Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122 +L +T T AAAEM RV ++ + Sbjct: 90 WEILAITFTNKAAAEMKERVGGLVGPVAE------------------------------- 118 Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I++Q + ++F I D + +++L+ K Sbjct: 119 -------RMWVSTFHSICVRILRQNAQLVPGLNTNFTIYDGDDARRLLSMIAKDM 166 >gi|300690847|ref|YP_003751842.1| DNA helicase II [Ralstonia solanacearum PSI07] gi|299077907|emb|CBJ50546.1| DNA helicase II [Ralstonia solanacearum PSI07] Length = 795 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P SA + A AGSGKT +L R+ L+ + PS +L +T T Sbjct: 3 DLLAHLNPEQRTAVTLPDESALILAGAGSGKTRVLTTRIAWLVQSGRVSPSGVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM+ R+ ++ G+ Sbjct: 63 KAAKEMTSRLSAMLPI--------------------------------------NTRGMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D + + K L S+ +D+ + K Sbjct: 85 IGTFHGLCNRLLRAHYRDAGLPQTFQILDTQDQLS----SIKRLLKSLNVDDEKFPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ +I + +R L + + R +++ Sbjct: 141 QYFINGAKEQGRRAGDLEIANEFDRRMADLYAAYDAQCQREGVVD 185 >gi|323693634|ref|ZP_08107834.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14673] gi|323502325|gb|EGB18187.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14673] Length = 813 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 43/184 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 +Q V A AGSGKT +L R+ L+ +P ++ +T T AAAEM Sbjct: 8 NPMQQEAVYHTEGPLLVLAGAGSGKTRVLTHRIAYLIEEKQVNPWNIMAITFTNKAAAEM 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +I+ + + V T H+ Sbjct: 68 RERVDKIVGFGAE--------------------------------------SIWVSTFHS 89 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C I+++ +++F I D + + L+++ K + +D + ++A + Sbjct: 90 SCVRILRRHIEYLGYSTNFTIYDGDDQRTLMKQIFKR----LDVDTKQFKERAVLSRISS 145 Query: 199 SNDE 202 + D+ Sbjct: 146 AKDD 149 >gi|225023085|ref|ZP_03712277.1| hypothetical protein CORMATOL_03133 [Corynebacterium matruchotii ATCC 33806] gi|224944308|gb|EEG25517.1| hypothetical protein CORMATOL_03133 [Corynebacterium matruchotii ATCC 33806] Length = 894 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 83/230 (36%), Gaps = 43/230 (18%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DLI+ +Q A + + S + A AGSGKT +L +R+ LL + P +L +T T Sbjct: 94 DLIADLNPQQRAAVEHSGSPLLIVAGAGSGKTAVLTRRIAYLLRMRGVAPGQILAITFTN 153 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV++++ + + Sbjct: 154 KAAAEMRDRVIDLVGPTAT--------------------------------------RMW 175 Query: 133 VQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H+ C I+++ + ++F I D + SK+L+ K + L A Sbjct: 176 VATFHSACVRILREQAHLLPGLNTNFTIYDADDSKRLLGMIAKDLQINAQKFPPRLLAAA 235 Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 + D D + + + R ++R++ + Sbjct: 236 ISALKTELTDPDAAS--DEAAATRNPFDRTIAEVYTEYQRRLRAANALDF 283 >gi|77920383|ref|YP_358198.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380] gi|77546466|gb|ABA90028.1| ATP-dependent DNA helicase PcrA [Pelobacter carbinolicus DSM 2380] Length = 737 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 72/196 (36%), Gaps = 46/196 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 S+ + ++ + + +L D + A AGSGKT L R+ L+ P +L + Sbjct: 1 MSDLLTSLNDCQRQAVLHED--GPLLILAGAGSGKTRTLTHRIAYLIQQQQVEPWQVLAV 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AAAEM R+ ++ Sbjct: 59 TFTNKAAAEMRERLQSLVG---------------------------------------NI 79 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 GL + T HA C I+++ F I D++ ++LI++ LA + + + Sbjct: 80 DGLWISTFHAACARILRRDGEVLGYGRDFTIYDDQDQQRLIKDC----LAQLRITEKDLK 135 Query: 189 KKAFYEILEISNDEDI 204 +A ++ + + + Sbjct: 136 PRAVATAIDQAKNRGL 151 >gi|194334487|ref|YP_002016347.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271] gi|194312305|gb|ACF46700.1| UvrD/REP helicase [Prosthecochloris aestuarii DSM 271] Length = 743 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 40/168 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCL 68 S+ + ++ + + + + + V A AGSGKT ++ R+ L+ P +L L Sbjct: 1 MSDILQQLNDVQRQAVQTT--SGPVMVLAGAGSGKTRVITYRIAYLIEQERVEPHQILAL 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM HR+ D++L T+ Sbjct: 59 TFTNKAAKEMRHRI-----------DQLLHQGSTR------------------------- 82 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 GL + T H+ I++ + S+F+I D + SK L+++ K Sbjct: 83 -GLWIGTFHSVFARILRNYIHLIGYNSNFSIYDSDDSKSLVKQVMKEL 129 >gi|329938133|ref|ZP_08287584.1| ATP-dependent DNA helicase II [Streptomyces griseoaurantiacus M045] gi|329302622|gb|EGG46512.1| ATP-dependent DNA helicase II [Streptomyces griseoaurantiacus M045] Length = 901 Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 64/171 (37%), Gaps = 41/171 (23%) Query: 7 FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTL 65 + + +D +++ ++ + A AGSGKT +L R+ LL N HP + Sbjct: 74 VLDAAALLDGLNEN--QRAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLAERNVHPGQI 131 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T AA EM RV +++ +H Sbjct: 132 LAITFTNKAAGEMKERVEQLVGPRAH---------------------------------- 157 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ TS F+I D SK+L+ + Sbjct: 158 ----AMWVMTFHSACVRILRRESKRLGFTSSFSIYDAADSKRLMALVCRDL 204 >gi|303233093|ref|ZP_07319766.1| putative ATP-dependent DNA helicase PcrA [Atopobium vaginae PB189-T1-4] gi|302480678|gb|EFL43765.1| putative ATP-dependent DNA helicase PcrA [Atopobium vaginae PB189-T1-4] Length = 873 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 39/164 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 I+L + ++ + V A AGSGKT +L R+ ++ P +L +T T Sbjct: 61 INLSTLNPQQREAVTCTKGPLLVLAGAGSGKTRVLTHRIAYIIQHEQVQPWRILAITFTN 120 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +++ ET G+ Sbjct: 121 KAAKEMRERLEMLLS--------------------------------------ETMRGMW 142 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HA C I+++ TS+F + D+ SK+L++ Sbjct: 143 VCTFHAMCSRILREHADVLGYTSNFVVYDDSDSKRLVKTIMDDL 186 >gi|88802036|ref|ZP_01117564.1| ATP-dependent helicase [Polaribacter irgensii 23-P] gi|88782694|gb|EAR13871.1| ATP-dependent helicase [Polaribacter irgensii 23-P] Length = 1052 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 6/172 (3%) Query: 37 SANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +A+AGSGKT LV++ L++LL + +L +T T AA EM RVL + +S + Sbjct: 11 NASAGSGKTFTLVKQYLKVLLTSEDLFMFQKVLAITFTNKAAGEMKERVLSSLEGFSEGN 70 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 L I + ++ +++++L IL+ + TI +F I++ F + + Sbjct: 71 TNDLLKMILEETNIN-QRTVQERSKNILDAILKNYAAFSITTIDSFTHKIIKSFAHDLGL 129 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 + +F + E + L+ EA ++ I Y + + +D+ + Sbjct: 130 SGNFEV--EMDAISLLNEAVDVLVSKIGTHKKLTQLLIDYSLDKADDDKSWD 179 >gi|329920500|ref|ZP_08277232.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN 1401G] gi|328936176|gb|EGG32629.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN 1401G] Length = 742 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L +Q V A AGSGKT +L +R+ L+ P +L +T T A Sbjct: 7 LAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM RV +++ + + + + Sbjct: 67 ASEMRERVKQLLDSDA--------------------------------------DSIWMS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HA C I++++ + ++F+IAD + LI K L + +D+ + K+ Sbjct: 89 TFHALCVRILRRYAEKIGYANNFSIADTAEQLTLI----KRILKELNIDSKKFDPKSLVN 144 Query: 195 ILEISNDEDIE 205 + + ++ ++ Sbjct: 145 AISNAKNDLLD 155 >gi|239943694|ref|ZP_04695631.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998] gi|239990145|ref|ZP_04710809.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 11379] gi|291447158|ref|ZP_06586548.1| ATP-dependent DNA helicase II [Streptomyces roseosporus NRRL 15998] gi|291350105|gb|EFE77009.1| ATP-dependent DNA helicase II [Streptomyces roseosporus NRRL 15998] Length = 812 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 63/175 (36%), Gaps = 41/175 (23%) Query: 3 YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAH 61 + + + +D ++ ++ + A AGSGKT +L R+ LL H Sbjct: 56 HPRPAIDSAALLDGLN--TEQRAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLAERGTH 113 Query: 62 PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121 P +L +T T AA EM RV +++ + Sbjct: 114 PGQILAITFTNKAAGEMKERVEQLVGPRA------------------------------- 142 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ + TS F+I D SK+L+ + Sbjct: 143 -------NAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRDL 190 >gi|209965327|ref|YP_002298242.1| UvrD [Rhodospirillum centenum SW] gi|209958793|gb|ACI99429.1| UvrD [Rhodospirillum centenum SW] Length = 1178 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 80/223 (35%), Gaps = 47/223 (21%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69 + ++ + E + A D V A AG+GKT +L R+ LL+ A P +L +T Sbjct: 36 PAYLAGLNPAQREAVEALD--GPVLVLAGAGTGKTRVLTTRLAHLLVTRRAGPWNILTVT 93 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV ++ + Sbjct: 94 FTNKAAREMRERVEALVGVPTE-------------------------------------- 115 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G + T HA I+++ + F I D + +L+++ + + +D+ + Sbjct: 116 GWWMGTFHALAARILRRHAELVGLKPSFTILDTDDQIRLLKQ----LMEAENIDSKKWPA 171 Query: 190 KAFYEILEISNDEDI--ETLISDIISNRTALKLIFFFFSYLWR 230 + +E D+ + + L + + +LI + Y R Sbjct: 172 RVLLGAIERWKDKALTPDRLKREDAGDMAGGRLIDLYRQYQDR 214 >gi|307547016|ref|YP_003899495.1| DNA-dependent helicase II [Halomonas elongata DSM 2581] gi|307219040|emb|CBV44310.1| DNA-dependent helicase II [Halomonas elongata DSM 2581] Length = 762 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 69/194 (35%), Gaps = 45/194 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 +D ++ + E + A P + V A AGSGKT +LV R+ L+ P +L +T T Sbjct: 35 ILDQMNPAQREAVSA--PQGNMLVLAGAGSGKTRVLVHRIAWLMQAEGLSPYAVLAVTFT 92 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ + + Sbjct: 93 NKAAREMRTRLEALLGI--------------------------------------SLRHV 114 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H+ +++ +A + HF I D + +LI K L +D+ + Sbjct: 115 WVGTFHSIAHRLLRTHWQDARLPQHFQIIDSDDQLRLI----KRLLKDYNIDDERYPPRQ 170 Query: 192 FYEILEISNDEDIE 205 + +E + Sbjct: 171 VQSFISGCKEEGLR 184 >gi|322417761|ref|YP_004196984.1| UvrD/REP helicase [Geobacter sp. M18] gi|320124148|gb|ADW11708.1| UvrD/REP helicase [Geobacter sp. M18] Length = 730 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 65/190 (34%), Gaps = 44/190 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L + ++ V A AGSGKT ++V R+ L+ P +L +T T A Sbjct: 4 LHNLNPPQKEAVLHGEGPLLVLAGAGSGKTRVIVHRIAYLIHELGVPPWQILAVTFTNKA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ + Sbjct: 64 AGEMRERVRHMLGEGETPL---------------------------------------IS 84 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C I++ S+FAI D++ ++L++E A + LD K Sbjct: 85 TFHSTCARILRSDIKSLGYDSNFAIYDDKDCERLLKECV----AEMNLDEKRYPVKLLGS 140 Query: 195 ILEISNDEDI 204 ++ ++ + Sbjct: 141 AIDEFKNQGM 150 >gi|259501107|ref|ZP_05744009.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners DSM 13335] gi|315653835|ref|ZP_07906751.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners ATCC 55195] gi|259167801|gb|EEW52296.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners DSM 13335] gi|315488531|gb|EFU78177.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners ATCC 55195] Length = 744 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L +Q V A AGSGKT +L +R+ L+ P +L +T T A Sbjct: 9 LAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM RV +++ + + + + Sbjct: 69 ASEMRERVKQLLDSDA--------------------------------------DSIWMS 90 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HA C I++++ + ++F+IAD + LI K L + +D+ + K+ Sbjct: 91 TFHALCVRILRRYAEKIGYANNFSIADTAEQLTLI----KRILKELNIDSKKFDPKSLVN 146 Query: 195 ILEISNDEDIE 205 + + ++ ++ Sbjct: 147 AISNAKNDLLD 157 >gi|167627248|ref|YP_001677748.1| DNA helicase II [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597249|gb|ABZ87247.1| DNA helicase II [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 742 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 44/193 (22%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 D +S +Q A+ R++ + A AGSGKT +L R+ L +L +T T Sbjct: 5 DFLSGLNPQQKKATLLEDRNSLILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA E+ HRV +++ + G+ Sbjct: 65 KAAKEIQHRVEKMLGISTF--------------------------------------GMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H ++++ E + +F I D+++ +LI K + S+ LD+ + K Sbjct: 87 IGTFHGIAHRLLRKHAHELGLDKNFRILDQDEQAQLI----KKVIKSLDLDDKKYPPKLL 142 Query: 193 YEILEISNDEDIE 205 + D+ + Sbjct: 143 QNFINKQKDKAVR 155 >gi|256545197|ref|ZP_05472563.1| ATP-dependent DNA helicase PcrA [Anaerococcus vaginalis ATCC 51170] gi|256399238|gb|EEU12849.1| ATP-dependent DNA helicase PcrA [Anaerococcus vaginalis ATCC 51170] Length = 729 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 57/164 (34%), Gaps = 39/164 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +DL + ++ V A AGSGKT +L + L+ N +P +L +T T Sbjct: 1 MDLSNLNDKQKEAVLHDKGPLLVVAGAGSGKTRVLTTSIAYLIKEKNVNPVNILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +++ E L Sbjct: 61 KAANEMKERISDLLD--------------------------------------EDVSHLW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I++ + ++F I D K L++E Sbjct: 83 IGTFHSICARILRMNINKIGYDNNFTIYDTNDQKTLVKEIINDL 126 >gi|330961415|gb|EGH61675.1| DNA-dependent helicase II [Pseudomonas syringae pv. maculicola str. ES4326] Length = 727 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 +++ + V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM H Sbjct: 15 AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ +P G+ V T H Sbjct: 75 RIEQLMGI--------------------------------------SPAGMWVGTFHGLA 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + F I D + ++L K + + LD + + Sbjct: 97 HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152 Query: 201 DEDIE 205 DE + Sbjct: 153 DEGLR 157 >gi|325911371|ref|ZP_08173783.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 143-D] gi|325476721|gb|EGC79875.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 143-D] Length = 742 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L +Q V A AGSGKT +L +R+ L+ P +L +T T A Sbjct: 7 LAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM RV +++ + + + + Sbjct: 67 ASEMRERVKQLLDSDA--------------------------------------DSIWMS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HA C I++++ + ++F+IAD + LI K L + +D+ + K+ Sbjct: 89 TFHALCVRILRRYAEKIGYANNFSIADTAEQLTLI----KRILKELNIDSKKFDPKSLVN 144 Query: 195 ILEISNDEDIE 205 + + ++ ++ Sbjct: 145 AISNAKNDLLD 155 >gi|302190445|ref|ZP_07266699.1| superfamily I DNA/RNA helicase [Lactobacillus iners AB-1] Length = 742 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L +Q V A AGSGKT +L +R+ L+ P +L +T T A Sbjct: 7 LAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM RV +++ + + + + Sbjct: 67 ASEMRERVKQLLDSDA--------------------------------------DSIWMS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HA C I++++ + ++F+IAD + LI K L + +D+ + K+ Sbjct: 89 TFHALCVRILRRYAEKIGYANNFSIADTAEQLTLI----KRILKELNIDSKKFDPKSLVN 144 Query: 195 ILEISNDEDIE 205 + + ++ ++ Sbjct: 145 AISNAKNDLLD 155 >gi|303240584|ref|ZP_07327099.1| ATP-dependent DNA helicase PcrA [Acetivibrio cellulolyticus CD2] gi|302591821|gb|EFL61554.1| ATP-dependent DNA helicase PcrA [Acetivibrio cellulolyticus CD2] Length = 739 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 44/194 (22%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL++ +EQ A + A AGSGKT +L R+ L+ +PS++L +T T Sbjct: 1 MDLLNGLNNEQREAVLHVDGPLLILAGAGSGKTRVLTNRIAYLIKEKGVYPSSILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +++ S + Sbjct: 61 NKAAKEMRERIDKLVENVS--------------------------------------DSM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H+ C I+++ + + FAI D + K L + L+ K+ Sbjct: 83 WVSTFHSLCVRILRKDIEKLDYDRSFAIFDYTDQ----QTVVKDCLKELNLNEKNYPPKS 138 Query: 192 FYEILEISNDEDIE 205 E++ + DE I+ Sbjct: 139 MLEMIGRAKDELID 152 >gi|325913324|ref|ZP_08175692.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 60-B] gi|325477427|gb|EGC80571.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners UPII 60-B] Length = 742 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L +Q V A AGSGKT +L +R+ L+ P +L +T T A Sbjct: 7 LAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM RV +++ + + + + Sbjct: 67 ASEMRERVKQLLDSDA--------------------------------------DSIWMS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HA C I++++ + ++F+IAD + LI K L + +D+ + K+ Sbjct: 89 TFHALCVRILRRYAEKIGYANNFSIADTAEQLTLI----KRILKELNIDSKKFDPKSLVN 144 Query: 195 ILEISNDEDIE 205 + + ++ ++ Sbjct: 145 AISNAKNDLLD 155 >gi|327540076|gb|EGF26671.1| ATP-dependent DNA helicase, UvrD/REP family [Rhodopirellula baltica WH47] Length = 621 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 53/255 (20%), Positives = 103/255 (40%), Gaps = 26/255 (10%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 + +D + ++ + A +PT V A+AG+GKT+ L R+L++LL A P T+L Sbjct: 39 SLPDELDFVVESPTTLREAFEPT---LVRASAGTGKTYQLTARLLKILLTGAPPETILAT 95 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T+ AA E+ RVL + + E E+ + G + + L +L Sbjct: 96 TFTRKAAGEILERVLITLGKAAIDPSEKAITELRQQVGIEGLPRHVCGQ--LFHRLLRNI 153 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 L++ T+ + + + P E ++ + + DE + L + A + + S+ E L Sbjct: 154 HRLRICTLDSLFSQLARALPFELDLPPGWRLTDEVEEIWLRQVAIGNLIESLQPAETETL 213 Query: 189 KKAF--------------------YEILEISNDEDIETL-ISDIISNRTALKLIFFFFSY 227 Y + ++ E + L + ++ + + S Sbjct: 214 ISMLSRGDVKRNIARELIDVVENTYNLARQADVERWDQLKVPELPESADITRTSGMLRSA 273 Query: 228 LWRRKIIEKSLWSIA 242 +K + K+L S A Sbjct: 274 DVPQKSLVKALESAA 288 >gi|160872129|ref|ZP_02062261.1| DNA helicase II [Rickettsiella grylli] gi|159120928|gb|EDP46266.1| DNA helicase II [Rickettsiella grylli] Length = 722 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 66/191 (34%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L S +++Q + + V A AGSGKT +LV R+ L+ + +L +T T A Sbjct: 9 LESLNEAQQQVVAARQTHLLVLAGAGSGKTRVLVHRMAWLIHVEGISLHHILAVTFTNKA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ + V Sbjct: 69 AGEMRQRLENLLDIPMKT--------------------------------------MWVG 90 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H +++Q + + F I D + ++I K L S+ LD + K Sbjct: 91 TFHGLAHRLLRQHWEASGLPQSFQIIDSDDQYRMI----KRILLSLNLDEAQWAPKKVQW 146 Query: 195 ILEISNDEDIE 205 + DE I Sbjct: 147 FINQQKDEGIR 157 >gi|309804689|ref|ZP_07698754.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV 09V1-c] gi|309809370|ref|ZP_07703232.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN 2503V10-D] gi|312873367|ref|ZP_07733418.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2052A-d] gi|308166081|gb|EFO68299.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV 09V1-c] gi|308170281|gb|EFO72312.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners SPIN 2503V10-D] gi|311091051|gb|EFQ49444.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2052A-d] Length = 742 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L +Q V A AGSGKT +L +R+ L+ P +L +T T A Sbjct: 7 LAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM RV +++ + + + + Sbjct: 67 ASEMRERVKQLLDSDA--------------------------------------DSIWMS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HA C I++++ + ++F+IAD + LI K L + +D+ + K+ Sbjct: 89 TFHALCVRILRRYAEKIGYANNFSIADTAEQLTLI----KRILKELNIDSKKFDPKSLVN 144 Query: 195 ILEISNDEDIE 205 + + ++ ++ Sbjct: 145 AISNAKNDLLD 155 >gi|189346089|ref|YP_001942618.1| UvrD/REP helicase [Chlorobium limicola DSM 245] gi|189340236|gb|ACD89639.1| UvrD/REP helicase [Chlorobium limicola DSM 245] Length = 741 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 39/164 (23%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 D + Q A + V A AGSGKT ++ R+ L+ P +L LT T Sbjct: 3 DFLRDLNDVQRSAVTATEGPVMVLAGAGSGKTRVITYRIAHLIRNNGVTPYNILALTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM HR+ +++ + S GL Sbjct: 63 KAAGEMRHRIDKLLQSGS-------------------------------------ASGLW 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ +++ + +F+I D + SK LI ++ Sbjct: 86 IGTFHSVFARLLRSYIHLIGYDRNFSIFDSDDSKSLIRQSMNEL 129 >gi|312870767|ref|ZP_07730873.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 3008A-a] gi|311093643|gb|EFQ51981.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 3008A-a] Length = 742 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L +Q V A AGSGKT +L +R+ L+ P +L +T T A Sbjct: 7 LAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM RV +++ + + + + Sbjct: 67 ASEMRERVKQLLDSDA--------------------------------------DSIWMS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HA C I++++ + ++F+IAD + LI K L + +D+ + K+ Sbjct: 89 TFHALCVRILRRYAEKIGYANNFSIADTAEQLTLI----KRILKELNIDSKKFDPKSLVN 144 Query: 195 ILEISNDEDIE 205 + + ++ ++ Sbjct: 145 AISNAKNDLLD 155 >gi|309808887|ref|ZP_07702768.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV 01V1-a] gi|308167885|gb|EFO70022.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV 01V1-a] Length = 742 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L +Q V A AGSGKT +L +R+ L+ P +L +T T A Sbjct: 7 LAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM RV +++ + + + + Sbjct: 67 ASEMRERVKQLLDSDA--------------------------------------DSIWMS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HA C I++++ + ++F+IAD + LI K L + +D+ + K+ Sbjct: 89 TFHALCVRILRRYAEKIGYANNFSIADTAEQLTLI----KRILKELNIDSKKFDPKSLVN 144 Query: 195 ILEISNDEDIE 205 + + ++ ++ Sbjct: 145 AISNAKNDLLD 155 >gi|291303528|ref|YP_003514806.1| ATP-dependent DNA helicase PcrA [Stackebrandtia nassauensis DSM 44728] gi|290572748|gb|ADD45713.1| ATP-dependent DNA helicase PcrA [Stackebrandtia nassauensis DSM 44728] Length = 762 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 75/190 (39%), Gaps = 45/190 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 +D ++ + + +L P + A AGSGKT +L QR+ L+ + HP +L +T T Sbjct: 19 LLDGLNDPQRQAVLHEGP--PLLIVAGAGSGKTRVLTQRIAHLVAVRGVHPGEILAITFT 76 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM RV ++ + + + Sbjct: 77 NKAAAEMRDRVSSVVGNRARM--------------------------------------M 98 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T HA C I+++ N+ S F + D + S++L+++ + LD + Sbjct: 99 WVLTFHAACMRILRREHERLNLKSTFTVYDSDDSRRLMQQVARDM----ELDKRHTPRGL 154 Query: 192 FYEILEISND 201 + + N+ Sbjct: 155 LASVSRLKNE 164 >gi|309803805|ref|ZP_07697890.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV 11V1-d] gi|312873066|ref|ZP_07733125.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2062A-h1] gi|308164039|gb|EFO66301.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LactinV 11V1-d] gi|311091299|gb|EFQ49684.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2062A-h1] Length = 742 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L +Q V A AGSGKT +L +R+ L+ P +L +T T A Sbjct: 7 LAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM RV +++ + + + + Sbjct: 67 ASEMRERVKQLLDSDA--------------------------------------DSIWMS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HA C I++++ + ++F+IAD + LI K L + +D+ + K+ Sbjct: 89 TFHALCVRILRRYAEKIGYANNFSIADTAEQLTLI----KRILKELNIDSKKFDPKSLVN 144 Query: 195 ILEISNDEDIE 205 + + ++ ++ Sbjct: 145 AISNAKNDLLD 155 >gi|166367339|ref|YP_001659612.1| ATP-dependent helicase [Microcystis aeruginosa NIES-843] gi|166089712|dbj|BAG04420.1| ATP-dependent helicase [Microcystis aeruginosa NIES-843] Length = 773 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 19/170 (11%) Query: 13 TIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 T D + Q Q LA + V A AGSGKT L R+ L+ P +L +T Sbjct: 4 TADYLEQLNPSQRLAVEHFCGPLLVVAGAGSGKTSALTYRIAHLIRHHGVDPENILAVTF 63 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-G 129 T AA EM R+ + E+ + + + L + Sbjct: 64 TNKAAREMKTRIEKTFAQQKAQEKYGQRLELLEEY----------EQKKLFSQVYRHYTK 113 Query: 130 GLKVQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAK 173 L + T H+ C I++ ++ E + +F+I DE ++ L++ Sbjct: 114 KLWIGTFHSLCGRILRYDINKYQDEYGHSWQRNFSIMDESDAQSLVKNIV 163 >gi|326792061|ref|YP_004309882.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427] gi|326542825|gb|ADZ84684.1| UvrD/REP helicase [Clostridium lentocellum DSM 5427] Length = 781 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 56/165 (33%), Gaps = 39/165 (23%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71 +D Q A + A AGSGKT +L R+ L+ P ++L +T T Sbjct: 1 MDFTKGLNERQKEAVLHTEGPLLILAGAGSGKTRVLTHRIAHLVENKGVKPWSILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ + + Sbjct: 61 NKAAKEMKERIGNLVAE-------------------------------------DAVNEM 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I++++ + F I D K LI++ K+ Sbjct: 84 WVSTFHSMCVRILRRYGERLGYSRFFTIYDTSDQKTLIKDTLKAL 128 >gi|271962781|ref|YP_003336977.1| ATP-dependent DNA helicase [Streptosporangium roseum DSM 43021] gi|270505956|gb|ACZ84234.1| ATP-dependent DNA helicase [Streptosporangium roseum DSM 43021] Length = 762 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 60/165 (36%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D ++ + E ++ + A AGSGKT +L R+ LL A P +L +T T Sbjct: 22 LLDGLNPQQREAVV--HHGSPLLIVAGAGSGKTRVLTHRIAYLLGERGAQPQEILAITFT 79 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +I S + Sbjct: 80 NKAAREMKDRVDNLIGPRS--------------------------------------AAM 101 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ S F+I D+ S++L+ + Sbjct: 102 WVMTFHSACVRILRREAKRLGFPSSFSIYDQADSQRLMAMVCREM 146 >gi|206559816|ref|YP_002230580.1| putative helicase [Burkholderia cenocepacia J2315] gi|198035857|emb|CAR51748.1| putative helicase [Burkholderia cenocepacia J2315] Length = 818 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 82/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 34 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 93 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 94 KAAREMMARLSAMMPIDTR--------------------------------------GMW 115 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 116 IGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 171 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 172 QYFINNAKEQGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVD 216 >gi|312875404|ref|ZP_07735408.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2053A-b] gi|311089067|gb|EFQ47507.1| ATP-dependent DNA helicase PcrA [Lactobacillus iners LEAF 2053A-b] Length = 742 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L +Q V A AGSGKT +L +R+ L+ P +L +T T A Sbjct: 7 LAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM RV +++ + + + + Sbjct: 67 ASEMRERVKQLLDSDA--------------------------------------DSIWMS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HA C I++++ + ++F+IAD + LI K L + +D+ + K+ Sbjct: 89 TFHALCVRILRRYAEKIGYANNFSIADTAEQLTLI----KRILKELNIDSKKFDPKSLVN 144 Query: 195 ILEISNDEDIE 205 + + ++ ++ Sbjct: 145 AISNAKNDLLD 155 >gi|325107376|ref|YP_004268444.1| ATP-dependent DNA helicase, Rep family [Planctomyces brasiliensis DSM 5305] gi|324967644|gb|ADY58422.1| ATP-dependent DNA helicase, Rep family [Planctomyces brasiliensis DSM 5305] Length = 770 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 63/186 (33%), Gaps = 45/186 (24%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I T S+Q V A GSGKT ++ QRV RL+ +P +L +T T AA+ Sbjct: 15 IQLTPSQQAAVEHVEGPMLVLAGPGSGKTRVVTQRVARLIEKGINPWNILAITFTNKAAS 74 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EMS R+ L L V T Sbjct: 75 EMSERL----------------------------------------QGLTDTRNLWVSTF 94 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEI 195 H FC +++Q + +F I D K +A K L+ + D K I Sbjct: 95 HRFCANVLRQRANVVGLQQNFTILDSADQK----QAIKQVLSELDFDAAHYPPGKILATI 150 Query: 196 LEISND 201 ND Sbjct: 151 SNAKND 156 >gi|253580201|ref|ZP_04857468.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848720|gb|EES76683.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 744 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 68/184 (36%), Gaps = 43/184 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78 +Q + A AGSGKT +L R+ L+ +P +L +T T AA+EM Sbjct: 9 NPQQQEAVYHTEGPLLILAGAGSGKTRVLTHRIAYLIDKKGINPWNILAITFTNKAASEM 68 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +I+ S + V T H+ Sbjct: 69 RERVDKIVGFGSE--------------------------------------SVWVSTFHS 90 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C I++++ + FAI D E K L++E + + +D + +++ + Sbjct: 91 TCVRILRRYIDRLGYDTRFAIYDTEDQKTLMKEVCR----KLNIDTKKTKERSLLAQISH 146 Query: 199 SNDE 202 + DE Sbjct: 147 AKDE 150 >gi|300932549|ref|ZP_07147805.1| putative ATP-dependent DNA helicase II [Corynebacterium resistens DSM 45100] Length = 864 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 ++ ++ + E +L + A AGSGKT +L +R+ LL P +L +T T Sbjct: 48 NLLEGLNPQQEEAVL--HRGGPLLIVAGAGSGKTSVLTRRIAHLLQTGVAPWQVLAITFT 105 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV++++ + + Sbjct: 106 NKAAGEMRERVVDLVGPQAE--------------------------------------KM 127 Query: 132 KVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKS 175 V T H+ C I++ + ++F I D + SK+LI K Sbjct: 128 WVSTFHSMCVRILRANANLVPGLNTNFTIYDSDDSKRLITMVIKD 172 >gi|325103975|ref|YP_004273629.1| UvrD/REP helicase [Pedobacter saltans DSM 12145] gi|324972823|gb|ADY51807.1| UvrD/REP helicase [Pedobacter saltans DSM 12145] Length = 768 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 76/221 (34%), Gaps = 48/221 (21%) Query: 13 TIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 +D + S Q A + + A AGSGKT ++ RV L+ P +L LT T Sbjct: 2 ILDYLKGLNSSQRQAVEQTEGPVMIVAGAGSGKTRVITYRVAHLIQKGVDPFQILVLTFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +++ + + Sbjct: 62 NKAAKEMRDRITKVVGPEAK--------------------------------------NI 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNN----- 185 + T H+ I++ + S+F I D + SK LI+ K L + + N Sbjct: 84 WMGTFHSIFAKILRVEANKLGYPSNFTIYDTDDSKSLIKAILKEMNLDDKLYNPNFVYGR 143 Query: 186 -EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFF 225 K E N+E I+ D + R L ++ + Sbjct: 144 ISMAKNNLISAAEYQNNEQIQA--DDFSTGRGQLGKVYATY 182 >gi|227494729|ref|ZP_03925045.1| ATP-dependent DNA helicase [Actinomyces coleocanis DSM 15436] gi|226831729|gb|EEH64112.1| ATP-dependent DNA helicase [Actinomyces coleocanis DSM 15436] Length = 868 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 64/171 (37%), Gaps = 41/171 (23%) Query: 7 FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 F + SE ++ ++ +Q + V A AGSGKT +L R+ LL A + Sbjct: 45 FNDGSELLEGLN--PQQQEAVTHAGAPLLVIAGAGSGKTRVLTHRIAYLLQTGRARAGEI 102 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T AAAEM RV ++ + Sbjct: 103 LAITFTNKAAAEMRERVANLVGPQAR---------------------------------- 128 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ A + S F I D S++LI K+ Sbjct: 129 ----RMWVFTFHSACVRILREQYQAAGLRSSFTIYDAADSQRLITLVSKNL 175 >gi|325109169|ref|YP_004270237.1| exodeoxyribonuclease V [Planctomyces brasiliensis DSM 5305] gi|324969437|gb|ADY60215.1| Exodeoxyribonuclease V [Planctomyces brasiliensis DSM 5305] Length = 1168 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 23/192 (11%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL---LCLTHTKAAAA 76 T + S ++A AG GKT +L QR + LL TL + +T T AA Sbjct: 4 TPQQAQAIQTRDVSIALAAGAGCGKTFVLTQRFVTELLQQPSAETLSGLMAITFTDRAAR 63 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ E + D++L+ E + IL+ +VQTI Sbjct: 64 EMRDRIREAVR------DQLLTCEDADQPAWQ--------------EILQNLETARVQTI 103 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFC A ++ E + F + DE + + + +S L+ ++ + N +L++ Sbjct: 104 HAFCGATLRTHATELGLDPDFGMLDEPTAAAMRNQVIQSELSRLLRERNADLQELILRYG 163 Query: 197 EISNDEDIETLI 208 +++L+ Sbjct: 164 LEGTMSRLQSLV 175 >gi|169350949|ref|ZP_02867887.1| hypothetical protein CLOSPI_01726 [Clostridium spiroforme DSM 1552] gi|169292011|gb|EDS74144.1| hypothetical protein CLOSPI_01726 [Clostridium spiroforme DSM 1552] Length = 714 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 63/165 (38%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL Q A+ S + A AGSGKT ++ R+ L+ P +L +T T Sbjct: 1 MDLDKLLNKNQKEAATYLDSHLRIIAGAGSGKTRVITYRIAYLIDEIGVDPRKILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV++++ + G L Sbjct: 61 NKAANEMKERVVDLLG-------------------------------------VHALGSL 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + TIH+ C I++Q N S+F I DEE K LI++ Sbjct: 84 -ICTIHSLCVRILRQHINVINYPSNFTIMDEEDQKALIKKIYNQL 127 >gi|315224517|ref|ZP_07866344.1| UvrD/REP helicase subfamily protein [Capnocytophaga ochracea F0287] gi|314945538|gb|EFS97560.1| UvrD/REP helicase subfamily protein [Capnocytophaga ochracea F0287] Length = 1060 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 46/209 (22%), Positives = 97/209 (46%), Gaps = 20/209 (9%) Query: 28 SDPTRSAWV-SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVL 83 + P+ + + +A+AGSGKT+ LV+ LR++L + P LL +T T A EM +R++ Sbjct: 2 NTPSANYTIYNASAGSGKTYSLVKAYLRIILGSKQPDLFRQLLAITFTNKAVFEMKNRII 61 Query: 84 EIITAWSH----LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 E++ +S + E+ K P++ ++ L IL + TI F Sbjct: 62 ELLGVFSEDKMLTKPHAMFTELAKELN-LPDEELRMRSAKALEHILHNYAAFNISTIDGF 120 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-- 197 +++ F + ++ F + + SK L+E + + + N+ EL + + Sbjct: 121 NHQLIRHFSQDLHLNPFFEV--QLDSKALLERSVDNLMNQA--GNDPELTQLLIDFANEK 176 Query: 198 ISNDEDIETL-----ISDIISNRTALKLI 221 I +D+ +T ++++++N + + Sbjct: 177 IDDDKSWDTTKELLGVAEMLTNENHYEQL 205 >gi|269836802|ref|YP_003319030.1| UvrD/REP helicase [Sphaerobacter thermophilus DSM 20745] gi|269786065|gb|ACZ38208.1| UvrD/REP helicase [Sphaerobacter thermophilus DSM 20745] Length = 738 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 80/233 (34%), Gaps = 57/233 (24%) Query: 14 IDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 +DL+ +Q + V A GSGKT +L RV L+ P +L +T T Sbjct: 10 VDLLRGLNEAQQRAVTITEGPVLVVAGPGSGKTRVLTHRVAYLIDQRGVSPWNILAVTFT 69 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ +AR L Sbjct: 70 NKAAREMRDRLEVLVGP--------------------------ERARQL----------- 92 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T HA C I+++ + F I D+ +A + L ++ LD + + Sbjct: 93 TVGTFHALCVRILRRDGHLIGLDPRFTIYDDADQI----DAVRQALKALNLDPKQFPPRP 148 Query: 192 FYEILEISND---------EDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 + + E +ET +I+S ++ + L R + ++ Sbjct: 149 ILSRISAAKSQVVDPARFAEQVETYWEEIVS-----RVYPRYQEILRRNRALD 196 >gi|260430925|ref|ZP_05784896.1| ATP-dependent DNA helicase PcrA [Silicibacter lacuscaerulensis ITI-1157] gi|260414753|gb|EEX08012.1| ATP-dependent DNA helicase PcrA [Silicibacter lacuscaerulensis ITI-1157] Length = 800 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 71/192 (36%), Gaps = 43/192 (22%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D +++ Q A + + A AG+GKT L R+ LL A P+ +L +T T Sbjct: 28 DYLNELNPAQREAVELLDGPILMLAGAGTGKTKALTTRIAHLLNTGRARPNEILAVTFTN 87 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + G Sbjct: 88 KAAREMKERVGRLLGQPAE-------------------------------------GMPW 110 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ C ++++ A + S+F I D + +L+++ + + +D+ + Sbjct: 111 LGTFHSICVKLLRRHAELAGLKSNFTILDTDDQLRLLKQLVQ----AANIDDKRWPARML 166 Query: 193 YEILEISNDEDI 204 I++ + + Sbjct: 167 AGIIDDWKNRAL 178 >gi|241667801|ref|ZP_04755379.1| DNA helicase II [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876345|ref|ZP_05249055.1| DNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842366|gb|EET20780.1| DNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 742 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 44/193 (22%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 D +S +Q A+ R++ + A AGSGKT +L R+ L +L +T T Sbjct: 5 DFLSGLNPQQKKATLLEDRNSLILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA E+ HRV +++ + G+ Sbjct: 65 KAAKEIQHRVEKMLGISTF--------------------------------------GMW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H ++++ E + +F I D+++ +LI K + S+ LD+ + K Sbjct: 87 IGTFHGIAHRLLRKHAHELGLDKNFRILDQDEQAQLI----KKVIKSLDLDDKKYPPKLL 142 Query: 193 YEILEISNDEDIE 205 + D+ + Sbjct: 143 QNFINKQKDKAVR 155 >gi|90419186|ref|ZP_01227096.1| uvrD/REP helicase [Aurantimonas manganoxydans SI85-9A1] gi|90336123|gb|EAS49864.1| uvrD/REP helicase [Aurantimonas manganoxydans SI85-9A1] Length = 852 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 76/198 (38%), Gaps = 43/198 (21%) Query: 9 EHSETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 ++ D +S +EQ A + T V A AG+GKT +L R+ +L A PS +L Sbjct: 3 RNARAPDYLSGLNAEQRAAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGRAWPSQIL 62 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ ++ Sbjct: 63 AVTFTNKAAREMKQRIGLLVGEQVE----------------------------------- 87 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ I+++ A + S+F I D + +LI++ + + LD+ Sbjct: 88 --GMPWLGTFHSIGVKILRRHAELAGLKSNFTILDTDDQIRLIKQ----LIKAENLDDKR 141 Query: 187 ELKKAFYEILEISNDEDI 204 + F +L+ ++ + Sbjct: 142 WPARTFANMLDGWKNKAL 159 >gi|15602276|ref|NP_245348.1| DNA-dependent helicase II [Pasteurella multocida subsp. multocida str. Pm70] gi|12720662|gb|AAK02495.1| UvrD [Pasteurella multocida subsp. multocida str. Pm70] Length = 726 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 37/158 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + + + A P + V A AGSGKT +L R+ L+ + +++ Sbjct: 2 DISALLDGLNDKQRDAVAA--PLGNYLVLAGAGSGKTRVLTHRIAWLIAVEQVSEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ + + ++ L Sbjct: 60 VTFTNKAAAEMRHRIESTLANHA--------------------------SQRLF------ 87 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G+ V T H+ +++ L+AN+ F I D + Sbjct: 88 --GMWVGTFHSIAHRLLRAHHLDANLPQDFQILDADDQ 123 >gi|323484921|ref|ZP_08090276.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14163] gi|323401802|gb|EGA94145.1| ATP-dependent DNA helicase PcrA [Clostridium symbiosum WAL-14163] Length = 813 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 43/184 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 +Q V A AGSGKT +L R+ L+ +P ++ +T T AAAEM Sbjct: 8 NPMQQEAVYHTEGPLLVLAGAGSGKTRVLTHRIAYLIEEKQVNPWNIMAITFTNKAAAEM 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +I+ + + V T H+ Sbjct: 68 RERVDKIVGFGAE--------------------------------------SIWVSTFHS 89 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C I+++ +++F I D + + L+++ K + +D + ++A + Sbjct: 90 SCVRILRRHIEYLGYSTNFTIYDGDDQRTLMKQIFKR----LDVDTKQFKERAVLSRISS 145 Query: 199 SNDE 202 + D+ Sbjct: 146 AKDD 149 >gi|189463365|ref|ZP_03012150.1| hypothetical protein BACCOP_04082 [Bacteroides coprocola DSM 17136] gi|189429794|gb|EDU98778.1| hypothetical protein BACCOP_04082 [Bacteroides coprocola DSM 17136] Length = 1110 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 91/207 (43%), Gaps = 10/207 (4%) Query: 3 YHNSFQEHSETIDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61 +HN+ + T +Q +D R A+AGSGKT L + ++ L+ + H Sbjct: 6 FHNTSLNLLFLFSIFVFTNRKQRKKMTDYPRLLVYKASAGSGKTFTLAVQYIKQLIEDTH 65 Query: 62 P-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK-ARH 119 +L +T T A AEM R+LE + ++ S ++ N++++ + AR Sbjct: 66 AYRRILAVTFTNKATAEMKKRILEQLFGLANGLKSSDSYLEELLKITSKNEAEIRRAARE 125 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 L I+ +++TI +F +++M+ E + ++ +I E + ++ +A + + Sbjct: 126 ALTNIIHDYSRFRIETIDSFFQSVMRNLARELELGANMSI--ELNNADVLSDAVDAMIEK 183 Query: 180 IMLDNNEELKKAFYEILEISNDEDIET 206 + + Y +LE + + Sbjct: 184 L-----DRRSPVLYWLLEYIEERIADD 205 >gi|134300187|ref|YP_001113683.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum reducens MI-1] gi|134052887|gb|ABO50858.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum reducens MI-1] Length = 730 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 70/190 (36%), Gaps = 43/190 (22%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ++++SQ Q A V A AGSGKT +L R+ ++L P +L +T T Sbjct: 1 MNILSQLNPAQEEAVQHTEGPLLVLAGAGSGKTRVLTHRIAQILSQGVRPYNILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + L Sbjct: 61 KAANEMRARVENLVPQAAK--------------------------------------DLW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T H+ C I+++ S+F+I D+ + +I+E L + +D +A Sbjct: 83 VTTFHSACLRILRREIDVMGYGSNFSIYDDADQQTVIKEC----LKELEIDEKRFQPRAM 138 Query: 193 YEILEISNDE 202 + + ++ Sbjct: 139 LSAISGAKNK 148 >gi|34557616|ref|NP_907431.1| putative recombination protein RecB [Wolinella succinogenes DSM 1740] gi|34483333|emb|CAE10331.1| HELICASE [Wolinella succinogenes] Length = 905 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 11/194 (5%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 + + A+AGSGKT L R L LL AHPS +L LT T+ AA EM R+ + + A Sbjct: 2 ERDELLALRASAGSGKTFALTLRYLALLFKGAHPSEILTLTFTRKAALEMKERITQALVA 61 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 E + ++ ++ K + L+ L++ TI AF +I+++F Sbjct: 62 LQQG--EENPYLLGLVEAGITEEAIQEKRAEVYWRFLQ--ADLRITTIDAFLHSIVRKFC 117 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208 I F IA ++ E + L+ + + E L + + E E I + Sbjct: 118 WYIGIPHDFTIASVDE-----EAIMEDFLSRLSAKDQESLLEL--SVEESKGVEAILRFL 170 Query: 209 SDIISNRTALKLIF 222 D+ L + Sbjct: 171 RDLWHKEGELSQEY 184 >gi|94992155|ref|YP_600254.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS2096] gi|94545663|gb|ABF35710.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS2096] Length = 863 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 93/238 (39%), Gaps = 28/238 (11%) Query: 7 FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 QE+ D + ++Q+ A ++ VSA+AGSGKT ++V+R+L +L L Sbjct: 28 LQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 T T AA E+ R+ + + + + + + L L Sbjct: 88 FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184 ++ G + T+ AF + ++ ++ I+S F I D+ + L +E + M Sbjct: 129 QSLGQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQK 188 Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 + +A + S + + +++ F S + ++++ S A Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239 >gi|256824633|ref|YP_003148593.1| ATP-dependent DNA helicase PcrA [Kytococcus sedentarius DSM 20547] gi|256688026|gb|ACV05828.1| ATP-dependent DNA helicase PcrA [Kytococcus sedentarius DSM 20547] Length = 831 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 41/166 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70 E ++ ++ + E +L + + A AGSGKT +L R+ LL HP +L +T Sbjct: 71 ELLEGLNPPQREAVLHA--GSPLLIIAGAGSGKTRVLTHRIAHLLRHRGVHPGQILAITF 128 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV ++ + Sbjct: 129 TNKAAAEMRERVEALVGPPAR--------------------------------------A 150 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ + S F+I D S++LI + Sbjct: 151 MWVSTFHSACVRILRREAKTVGLRSTFSIYDAADSQRLISLVLREL 196 >gi|224543224|ref|ZP_03683763.1| hypothetical protein CATMIT_02424 [Catenibacterium mitsuokai DSM 15897] gi|224523857|gb|EEF92962.1| hypothetical protein CATMIT_02424 [Catenibacterium mitsuokai DSM 15897] Length = 710 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 60/166 (36%), Gaps = 42/166 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 E L++ + E D + A AGSGKT ++ R+ L+ +P +L +T Sbjct: 1 MELSQLLNPKQLEAATYLD--GHLRIIAGAGSGKTRVITYRIAYLIEEVGVNPHNILAIT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV I+ T Sbjct: 59 FTNKAANEMKTRVESILG---------------------------------------TSL 79 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G + TIH+ C +++Q +F I DEE K LI++ K Sbjct: 80 GTTICTIHSLCVRVLRQHSTAIGYPHNFIIMDEEDQKSLIKKLYKE 125 >gi|256397096|ref|YP_003118660.1| ATP-dependent DNA helicase PcrA [Catenulispora acidiphila DSM 44928] gi|256363322|gb|ACU76819.1| ATP-dependent DNA helicase PcrA [Catenulispora acidiphila DSM 44928] Length = 806 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 41/166 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 + +D +++ + E +L + + A AGSGKT +L R+ L+ +AHP ++L +T Sbjct: 59 KLLDGLNEPQREAVLHA--GGPLLIIAGAGSGKTRVLAHRIAYLVGERHAHPGSILAITF 116 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV E++ + L Sbjct: 117 TNKAAAEMRQRVEELVGPRARL-------------------------------------- 138 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I++ A + S+F+I D S++L+ + Sbjct: 139 MWVSTFHSACVRILRAQAKTAGLPSNFSIYDTADSQRLMTMVLRDL 184 >gi|237811975|ref|YP_002896426.1| DNA helicase II [Burkholderia pseudomallei MSHR346] gi|237506796|gb|ACQ99114.1| DNA helicase II [Burkholderia pseudomallei MSHR346] Length = 787 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185 >gi|57169065|ref|ZP_00368192.1| helicase, putative [Campylobacter coli RM2228] gi|57019523|gb|EAL56214.1| helicase, putative [Campylobacter coli RM2228] Length = 920 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 10/171 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + L+L A + +L LT TK A+ EM R++E S Sbjct: 7 LALEASAGSGKTFALSVRFVALILQGAKINEILALTFTKKASNEMKKRIIETFLNLEKES 66 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + E+ ++ G + ++ + + + + + LK+ T +F I++ F L + Sbjct: 67 KKSECKELCELLGCEEDELILLRDKKKQEFLRQ---ELKISTFDSFFSRILRAFALNLGL 123 Query: 154 TSHFAIADE--EQSKKLIEEAKKSTLASIM-----LDNNEELKKAFYEILE 197 +S F ++E + ++ + L + L++N + + E Sbjct: 124 SSDFDTSEEKLDVRAVFLKLLNRQELKDLAYYKVSLEDNHDFFEELENFYE 174 >gi|78066057|ref|YP_368826.1| ATP-dependent DNA helicase UvrD [Burkholderia sp. 383] gi|77966802|gb|ABB08182.1| ATP-dependent DNA helicase UvrD [Burkholderia sp. 383] Length = 787 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 82/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIKQGYASPPTVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPDKVDASDNFNRKFVELYQAYDQQCQREGVVD 185 >gi|309805876|ref|ZP_07699911.1| ATP-dependent helicase PcrA [Lactobacillus iners LactinV 03V1-b] gi|308167785|gb|EFO69929.1| ATP-dependent helicase PcrA [Lactobacillus iners LactinV 03V1-b] Length = 577 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 73/191 (38%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L +Q V A AGSGKT +L +R+ L+ P +L +T T A Sbjct: 7 LAGLNPEQQQAVKCTQGPLLVVAGAGSGKTSVLTRRIAYLIREKGVAPWNILAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM RV +++ + + + + Sbjct: 67 ASEMRERVKQLLDSDA--------------------------------------DSIWMS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HA C I++++ + ++F+IAD + LI K L + +D+ + K+ Sbjct: 89 TFHALCVRILRRYAEKIGYANNFSIADTAEQLTLI----KRILKELNIDSKKFDPKSLVN 144 Query: 195 ILEISNDEDIE 205 + + ++ ++ Sbjct: 145 AISNAKNDLLD 155 >gi|161525045|ref|YP_001580057.1| UvrD/REP helicase [Burkholderia multivorans ATCC 17616] gi|189350212|ref|YP_001945840.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Burkholderia multivorans ATCC 17616] gi|160342474|gb|ABX15560.1| UvrD/REP helicase [Burkholderia multivorans ATCC 17616] gi|189334234|dbj|BAG43304.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Burkholderia multivorans ATCC 17616] Length = 786 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + ++ +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKTLNVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPDKVDASDNFNRKFVELYQAYDQQCQREGVVD 185 >gi|58584432|ref|YP_198005.1| ATP-dependent exoDNAse (exonuclease V) beta subunit, RecB [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418748|gb|AAW70763.1| ATP-dependent exoDNAse (exonuclease V) beta subunit, RecB [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 1119 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 93/222 (41%), Gaps = 45/222 (20%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 +P S WV+A+AG+GKT IL+ RVLRLLL N + CLT T AAA EM R+ I+ Sbjct: 5 IINPNFSVWVNASAGTGKTKILIDRVLRLLLENK--RNIFCLTFTNAAANEMESRIHNIL 62 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSD--------------------------------M 114 + W+ SD L A + ++ + Sbjct: 63 SKWAVCSDNELIASLEQLDLSLLLLQHHYPPSHPFLSSQCLTLRSRWPQTKNSEVFNHYL 122 Query: 115 SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 +AR L + L +QT+HAFC ++ FP EA I + + + K+L Sbjct: 123 IQARRLFSELENL--DLTIQTVHAFCYKLISSFPAEAGIVPNCTL---SECKELHSIVFD 177 Query: 175 STLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRT 216 L +NE ++ + I ++ + L+ + R+ Sbjct: 178 KLL------HNEAVQDSIKFIAAEVDENKLRDLLYTLCIKRS 213 >gi|148266336|ref|YP_001233042.1| UvrD/REP helicase [Geobacter uraniireducens Rf4] gi|146399836|gb|ABQ28469.1| ATP-dependent DNA helicase PcrA [Geobacter uraniireducens Rf4] Length = 744 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 44/189 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L + ++ + A AGSGKT ++V R+ L+ + P +L +T T A Sbjct: 4 LHNLNPPQKEAVLHGEGPLLILAGAGSGKTRVIVHRIAYLIKERSVPPWQILAVTFTNKA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +++ G+ P + Sbjct: 64 AGEMRERVEKLLGG-----------------GELPL----------------------IS 84 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C I+++ ++FAI D++ ++KL++E A + LD K+F Sbjct: 85 TFHSACARILRREIHHLGYDANFAIYDDKDAEKLLKEIV----AELNLDEKRYPVKSFIA 140 Query: 195 ILEISNDED 203 ++ + Sbjct: 141 AIDECKNAG 149 >gi|213965014|ref|ZP_03393213.1| ATP-dependent DNA helicase PcrA [Corynebacterium amycolatum SK46] gi|213952550|gb|EEB63933.1| ATP-dependent DNA helicase PcrA [Corynebacterium amycolatum SK46] Length = 899 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 64/164 (39%), Gaps = 41/164 (25%) Query: 16 LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ +Q A + S + A AGSGKT +L +R+ L+ PS +L +T T Sbjct: 76 LLEGLNPQQRQAVEHIGSPLLIVAGAGSGKTSVLTRRIAYLIGARGVLPSQILAITFTNK 135 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM RV ++ + + V Sbjct: 136 AAAEMRERVAGLVG--------------------------------------DQAQRMWV 157 Query: 134 QTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ C I++ Q L + S+F+I D + S++L+ K Sbjct: 158 STFHSMCVRILRMQHALVPGLNSNFSIYDSDDSRRLLSMIAKDM 201 >gi|307944882|ref|ZP_07660219.1| ATP-dependent DNA helicase PcrA [Roseibium sp. TrichSKD4] gi|307771806|gb|EFO31030.1| ATP-dependent DNA helicase PcrA [Roseibium sp. TrichSKD4] Length = 801 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ ++L V A AG+GKT +L R+ +L A P +L +T T Sbjct: 40 YLDGLN--PEQRLAVETIDGPVLVLAGAGTGKTRVLTTRIAHILATGNARPFEVLAVTFT 97 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ I G Sbjct: 98 NKAAREMKERISGFIGGSVE-------------------------------------GMS 120 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C I+++ + S F+I D + +L+++ + + LD+ +A Sbjct: 121 WLGTFHSICMKILRKHAELVGLKSGFSILDTDDQIRLMKQ----IIQAEGLDDKRWTARA 176 Query: 192 FYEILEISNDEDI 204 F +++ + + Sbjct: 177 FASLIDGWKNRAL 189 >gi|299138774|ref|ZP_07031952.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8] gi|298599410|gb|EFI55570.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8] Length = 1202 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 12/223 (5%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMS 79 + + A D S V A AGSGKT +L+QR L+LL + P +L +T T+ A AE+ Sbjct: 15 AARTSALDTKASWIVEAPAGSGKTGLLMQRYLKLLTEDGVVQPEEVLAITFTRKATAELR 74 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+L + H + + + ++ + +++ L ++E P L+V+TI + Sbjct: 75 ARILTELEKAHHETPLLDQNSTFERATREFATAVLARDAALGWELIENPQRLRVRTIDSV 134 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL--E 197 C I PL + S + E ++ L A + TL + ++ L A IL Sbjct: 135 CAEIASTLPLLSG--SGGSRTPVEDAEPLYRLAARRTLMQLG-GSDAALHTALRTILLHR 191 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWS 240 + D ETL++ +++ R + R++++ + Sbjct: 192 DGSLSDCETLLARMLAAREQWGEL-----IPLDRELLDDAALD 229 >gi|167760475|ref|ZP_02432602.1| hypothetical protein CLOSCI_02849 [Clostridium scindens ATCC 35704] gi|167661841|gb|EDS05971.1| hypothetical protein CLOSCI_02849 [Clostridium scindens ATCC 35704] Length = 743 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 66/184 (35%), Gaps = 43/184 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 + ++ + A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 8 NEQQKEAVLHTEGPLLILAGAGSGKTRVLTHRIAYLIEEQGVNPWNILAITFTNKAAGEM 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + + V T H+ Sbjct: 68 RERVDKLVGFGAE--------------------------------------SIWVSTFHS 89 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C I+++ ++F I D + K L+++ K + +D ++A + Sbjct: 90 TCVRILRRHIDLLGYDNNFTIYDSDDQKTLMKDVCKL----LQIDTKIFKERALLSTISH 145 Query: 199 SNDE 202 + DE Sbjct: 146 AKDE 149 >gi|144899243|emb|CAM76107.1| UvrD/REP helicase [Magnetospirillum gryphiswaldense MSR-1] Length = 745 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 77/218 (35%), Gaps = 50/218 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 LI + + V + AG+GKT +L R+ ++L A P +L +T T A Sbjct: 34 LIGLNPEQHQAVTTTEGPVLVLSGAGTGKTRVLTSRLAQILAGRRAQPWQILAVTFTNKA 93 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM +RV ++ + L + Sbjct: 94 AREMKNRVAHMVGPVAE--------------------------------------QLWLG 115 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C I+++ + S+F I D + +L+++ + + +DN + ++ Sbjct: 116 TFHSLCVRILRRHAEAVGLKSNFTILDADDQLRLLKQ----VMEAEHIDNKKWPAQSLMG 171 Query: 195 ILEISNDEDI------ETLISDIISNRTALKLIFFFFS 226 ++ D + L D+ R +L + Sbjct: 172 AIQRWKDRGLTPDKIGADLAGDLAGGRAG-QLYRLYQE 208 >gi|187776812|ref|ZP_02993285.1| hypothetical protein CLOSPO_00328 [Clostridium sporogenes ATCC 15579] gi|187775471|gb|EDU39273.1| hypothetical protein CLOSPO_00328 [Clostridium sporogenes ATCC 15579] Length = 738 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL ++ EQ A+ + A AGSGKT +L R+ ++ N +PS +L +T T Sbjct: 1 MDLKNKLNKEQYEAATTIDGPLLILAGAGSGKTRVLTHRIAHMIENLNIYPSKILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ G+ Sbjct: 61 NKAAGEMKERIKALVGDVVE--------------------------------------GM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + +F I D K L+++ + Sbjct: 83 WVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCMEEL 127 >gi|260061427|ref|YP_003194507.1| ATP-dependent helicase [Robiginitalea biformata HTCC2501] gi|88785559|gb|EAR16728.1| ATP-dependent helicase [Robiginitalea biformata HTCC2501] Length = 1039 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 79/175 (45%), Gaps = 8/175 (4%) Query: 37 SANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 SA+AGSGKT+ L + L+LLL+ +L +T T A E+ +R+L+ + A++ + Sbjct: 12 SASAGSGKTYTLTREYLKLLLSGQGGQPFREILAITFTNKAVGELKNRILDSLEAFAGVR 71 Query: 94 DEILSAEITKIQGKKPNKSDMSKAR---HLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 DE + + + + AR +L IL V TI F I++ F + Sbjct: 72 DEAGRPVLFRDLQDELGTDRETLARRSGRVLQEILHNYAFFDVSTIDRFNHRILRTFARD 131 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 + ++F + + + L+E+A ++ + Y + + ++D + Sbjct: 132 LQLPANFEVVLDTDA--LLEQAVENLILQAGEVPALTRVLIDYALEKSADDRSWD 184 >gi|255020260|ref|ZP_05292329.1| ATP-dependent DNA helicase UvrD/PcrA [Acidithiobacillus caldus ATCC 51756] gi|254970402|gb|EET27895.1| ATP-dependent DNA helicase UvrD/PcrA [Acidithiobacillus caldus ATCC 51756] Length = 729 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 65/190 (34%), Gaps = 42/190 (22%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 + I ++ P A V A AGSGKT +L+ R+ LL P+ +L +T T A Sbjct: 17 EWIQLNDQQREAVLLPPGPALVLAGAGSGKTRVLISRIAHLLEEGVRPAEILAVTFTNKA 76 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A M R+ ++ L + Sbjct: 77 ARSMRERLAALVQV--------------------------------------DLAPLWMG 98 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H ++++ + + F + D + S++L+ A L + LD + +A Sbjct: 99 TFHGIAHRLLRRHAEALGLPADFQVLDSDDSQRLVRRA----LRELGLDEKQWTPRALAA 154 Query: 195 ILEISNDEDI 204 + DE Sbjct: 155 QIGRWKDEGW 164 >gi|222053487|ref|YP_002535849.1| UvrD/REP helicase [Geobacter sp. FRC-32] gi|221562776|gb|ACM18748.1| UvrD/REP helicase [Geobacter sp. FRC-32] Length = 746 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 66/189 (34%), Gaps = 44/189 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L + ++ + A AGSGKT ++V R+ L+ P +L +T T A Sbjct: 4 LHNLNPPQKDAVLHGEGPLLILAGAGSGKTRVIVHRIAYLITERGVPPWQILAVTFTNKA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + Sbjct: 64 AAEMRGRVEKLLPGGETPL---------------------------------------IS 84 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C I+++ S FAI D++ +KLI+E A + LD K F Sbjct: 85 TFHSACARILRREIHHLGYDSSFAIYDDKDGEKLIKEIV----AELHLDEKRFPAKLFTA 140 Query: 195 ILEISNDED 203 ++ + Sbjct: 141 AIDECKNAG 149 >gi|302544595|ref|ZP_07296937.1| ATP-dependent DNA helicase PcrA [Streptomyces hygroscopicus ATCC 53653] gi|302462213|gb|EFL25306.1| ATP-dependent DNA helicase PcrA [Streptomyces himastatinicus ATCC 53653] Length = 823 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 47/193 (24%), Positives = 75/193 (38%), Gaps = 44/193 (22%) Query: 16 LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ +Q A + T S + A AGSGKT +L R+ LL + HP +L +T T Sbjct: 70 LLEGLNEQQRAAVEHTGSPLLIVAGAGSGKTRVLTHRIAYLLGTRHVHPGQILAITFTNK 129 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV E++ + + V Sbjct: 130 AAGEMKERVEELVGPRA--------------------------------------NAMWV 151 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ C I+++ + TS F+I D SK+L+ + + LD + K+F Sbjct: 152 MTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRD----LDLDPKKFPPKSFS 207 Query: 194 EILEISNDEDIET 206 + +E I+ Sbjct: 208 AKISNLKNELIDE 220 >gi|306833181|ref|ZP_07466311.1| ATP-dependent nuclease subunit A [Streptococcus bovis ATCC 700338] gi|304424755|gb|EFM27891.1| ATP-dependent nuclease subunit A [Streptococcus bovis ATCC 700338] Length = 1210 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 81/221 (36%), Gaps = 27/221 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++V+R++ +L L T T AA E+ Sbjct: 29 TPEQIEAIYSYGNNILVSASAGSGKTFVMVERIIDKILRGVTIDQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ + ++ + ++ L L + T+ AF Sbjct: 89 ERIEKKIS-------------------QALQETTDNDLKNYLNEQLLGLQTADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ Q+ I+ F I D+ + L E + M NN EL + Sbjct: 130 TQKLVNQYGYTLGISPTFRIMTDKSEQDILKNEVFFDLFSDYMTGNNAELFRQLVR--NF 187 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 S + T I+ K+ F + +K + + Sbjct: 188 SGNRKDSTAFRGIV-----YKIYDFSQATDNPQKWLAEVFL 223 >gi|254282526|ref|ZP_04957494.1| DNA helicase II [gamma proteobacterium NOR51-B] gi|219678729|gb|EED35078.1| DNA helicase II [gamma proteobacterium NOR51-B] Length = 718 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 78/199 (39%), Gaps = 45/199 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE ++ ++ + Q +A++P+ V A AGSGKT +LV R+ L+ N P+ +L Sbjct: 2 DVSEILNPLNDAQR-QAVAAEPSHQ-LVLAGAGSGKTRVLVHRIAWLIRAENYSPNAVLA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ ++ +H Sbjct: 60 VTFTNKAAREMRGRIESMLQLPTH------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 GL + T H +++ AN+ +F I D + +L++ + + LD + Sbjct: 84 --GLWIGTFHGLAHRLLKAHWKAANLPQNFQILDSDDQLRLVKRVCR----ELDLDESRW 137 Query: 188 LKKAFYEILEISNDEDIET 206 K + DE + Sbjct: 138 PPKQAQWYINGQKDEGLRA 156 >gi|210608461|ref|ZP_03287837.1| hypothetical protein CLONEX_00016 [Clostridium nexile DSM 1787] gi|210153037|gb|EEA84043.1| hypothetical protein CLONEX_00016 [Clostridium nexile DSM 1787] Length = 741 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 71/201 (35%), Gaps = 52/201 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78 K ++ + A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 8 NKEQREAVYHTEGPLLILAGAGSGKTRVLTHRIAYLIDEKGVNPWNILAITFTNKAAGEM 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +I+ S + V T H+ Sbjct: 68 RERVDQIVGFGSE--------------------------------------SIWVSTFHS 89 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA------------KKSTLASIMLDNNE 186 C I+++ + F I D + K L+++ +++ LA+I +E Sbjct: 90 TCVRILRRHIDLLGYDTSFTIYDADDQKTLMKDVCKYLQIDTKVYKERNLLAAISSAKDE 149 Query: 187 ELKKAFYEILEISNDEDIETL 207 + YE+ + D + + Sbjct: 150 LITPEEYEL-NAAGDFGKQKI 169 >gi|319792357|ref|YP_004153997.1| uvrd/rep helicase [Variovorax paradoxus EPS] gi|315594820|gb|ADU35886.1| UvrD/REP helicase [Variovorax paradoxus EPS] Length = 808 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 80/234 (34%), Gaps = 46/234 (19%) Query: 6 SFQEHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63 + + + L+ EQ A P +A + A AGSGKT +L R+ LL Sbjct: 7 AADANPSELPLLQNLNPEQRAAVTLPQGNALILAGAGSGKTRVLTTRIAWLLQTGQVSAG 66 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L +T T AA EM R+ I+ Sbjct: 67 GILAVTFTNKAAKEMMTRLTAILPV----------------------------------- 91 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 G+ + T H C +++ AN+ S F I D + A K + +D Sbjct: 92 ---NVRGMWIGTFHGLCNRLLRAHWKLANLPSTFQILDTQDQLS----AIKRLMKQFNVD 144 Query: 184 NNEELKKAFYEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + K + + ++ + +I S +R ++L + R +++ Sbjct: 145 DERFPAKQTQWFIAGAKEDGLRPKDVEIRSDDDRKKVELYQLYEEQCQREGVVD 198 >gi|291521009|emb|CBK79302.1| ATP-dependent DNA helicase PcrA [Coprococcus catus GD/7] Length = 768 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 66/196 (33%), Gaps = 50/196 (25%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76 S +Q + A AGSGKT +L R+ L+ +P +L +T T AA Sbjct: 6 SLNPVQQEAVYHTEGPLLILAGAGSGKTRVLTHRIAYLIDECQVNPWNILAITFTNKAAG 65 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV +I+ + + V T Sbjct: 66 EMRERVDQIVDFGAE--------------------------------------DIWVSTF 87 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-----------KKSTLASIMLDNN 185 H+ C I++++ F I D + K +I+E K+ TL S + Sbjct: 88 HSTCVRILRRYIDRLGYDRSFTIYDGDDQKTVIKEVCKKLNIDTKIYKERTLLSAISSAK 147 Query: 186 EELKKAFYEILEISND 201 +E+ +L D Sbjct: 148 DEMIGPKEYLLRSEGD 163 >gi|207723734|ref|YP_002254132.1| dna helicase II (partial sequence) protein [Ralstonia solanacearum MolK2] gi|206588938|emb|CAQ35900.1| probable dna helicase II (partial sequence) protein [Ralstonia solanacearum MolK2] Length = 807 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 72/194 (37%), Gaps = 44/194 (22%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P SA + A AGSGKT +L R+ L+ ++ PS +L +T T Sbjct: 3 DLLAHLNPEQRAAVTLPDESALILAGAGSGKTRVLTTRIAWLVQSSRVSPSGVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM+ R+ ++ + Sbjct: 63 KAAKEMTARLSAMLPI--------------------------------------NTRAMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D + A K L S+ +D+ + K Sbjct: 85 IGTFHGLCNRLLRAHYRDAGLPQTFQILDTQDQLS----AVKRLLKSLNIDDEKFPPKNV 140 Query: 193 YEILEISNDEDIET 206 + + ++ + Sbjct: 141 QYFINGAKEQGLRA 154 >gi|221197704|ref|ZP_03570750.1| DNA helicase II [Burkholderia multivorans CGD2M] gi|221204738|ref|ZP_03577755.1| DNA helicase II [Burkholderia multivorans CGD2] gi|221175595|gb|EEE08025.1| DNA helicase II [Burkholderia multivorans CGD2] gi|221181636|gb|EEE14037.1| DNA helicase II [Burkholderia multivorans CGD2M] Length = 786 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + ++ +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKTLNVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPDKVDASDNFNRKFVELYQAYDQQCQREGVVD 185 >gi|154246915|ref|YP_001417873.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] gi|154161000|gb|ABS68216.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] Length = 1131 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 7/170 (4%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 S ++ + + S RS V A AGSGKT ++ R+ +L P + +T Sbjct: 2 MSRVSTVLKDDGARRDAISLHDRSILVEAGAGSGKTAVMAGRIAAMLAEGVSPRAIAAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T+ AA+E+ RV E + + LSD ++ E+ +++ R L Sbjct: 62 FTELAASELLSRVREFV---ADLSDGKIATELRVALPHGLSQAH----RDNLAAASTAID 114 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 + TIH FC+ +++ +P EA+I + D Q+ E L Sbjct: 115 EITCSTIHGFCQRLIKPYPAEADIDPGAGVMDRNQADLTFLEIVDGWLRE 164 >gi|295677083|ref|YP_003605607.1| UvrD/REP helicase [Burkholderia sp. CCGE1002] gi|295436926|gb|ADG16096.1| UvrD/REP helicase [Burkholderia sp. CCGE1002] Length = 795 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL+S EQ A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 13 DLLSNLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGLASPATVLAVTFTN 72 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 73 KAAREMMARLSALLPIDTR--------------------------------------GMW 94 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + + F I D A K + + +D+ + K Sbjct: 95 IGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLS----AIKRLMKGLNIDDEKYPAKNL 150 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 151 QYFINNAKEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVD 195 >gi|221214933|ref|ZP_03587901.1| DNA helicase II [Burkholderia multivorans CGD1] gi|221165160|gb|EED97638.1| DNA helicase II [Burkholderia multivorans CGD1] Length = 786 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + ++ +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKTLNVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPDKVDASDNFNRKFVELYQAYDQQCQREGVVD 185 >gi|149921690|ref|ZP_01910138.1| ATP-dependent DNA helicase PcrA [Plesiocystis pacifica SIR-1] gi|149817428|gb|EDM76900.1| ATP-dependent DNA helicase PcrA [Plesiocystis pacifica SIR-1] Length = 845 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 33/160 (20%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I +++ + A AG+GKT ++ QRV L+ +L +T T AA Sbjct: 5 IPLNPAQRAGVEYRGGPLLLLAGAGTGKTRVITQRVAALIDEGVPAWRILAVTFTNKAAG 64 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ ++ + ++ + R G + T Sbjct: 65 EMRERIAGLL------------------------EMELDELRR---------DGPWIGTF 91 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ C I+++ +T +F+I D + K L+ K Sbjct: 92 HSICARILRRHGQGVGLTRNFSIYDADDQKTLMRRVLKDL 131 >gi|209519276|ref|ZP_03268077.1| UvrD/REP helicase [Burkholderia sp. H160] gi|209500288|gb|EEA00343.1| UvrD/REP helicase [Burkholderia sp. H160] Length = 797 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL+S EQ A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 13 DLLSNLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGLASPATVLAVTFTN 72 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 73 KAAREMMARLSALLPIDTR--------------------------------------GMW 94 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + + F I D A K + + +D+ + K Sbjct: 95 IGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLS----AIKRLMKGLNIDDEKYPAKNL 150 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 151 QYFINNAKEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVD 195 >gi|295092248|emb|CBK78355.1| Superfamily I DNA and RNA helicases [Clostridium cf. saccharolyticum K10] Length = 830 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 59/164 (35%), Gaps = 41/164 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL++ + E V A AGSGKT +L R+ L+ +P ++ +T T Sbjct: 5 FDLLNPKQKE--AVFHTEGPLLVLAGAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV +I+ S + Sbjct: 63 KAAAEMRERVDQIVGFGSE--------------------------------------SIW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + F I D + + L+++ K Sbjct: 85 VSTFHSSCVRILRRHIDRLGYDTSFTIYDTDDQRTLMKQIFKRL 128 >gi|189463105|ref|ZP_03011890.1| hypothetical protein BACCOP_03815 [Bacteroides coprocola DSM 17136] gi|189430084|gb|EDU99068.1| hypothetical protein BACCOP_03815 [Bacteroides coprocola DSM 17136] Length = 784 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 60/163 (36%), Gaps = 38/163 (23%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 D +++ Q A + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 3 DYLNELNESQRAAVLYNDGPSLVIAGAGSGKTRVLTYKIAYLLDNGYEPWSILALTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + A +AR+L + Sbjct: 63 AAREMKERIARRVGA--------------------------ERARYL-----------WM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ +++F I D SK LI+ K Sbjct: 86 GTFHSIFSRILRTEAAAIGFSANFTIYDAADSKSLIKAIIKEM 128 >gi|116689464|ref|YP_835087.1| UvrD/REP helicase [Burkholderia cenocepacia HI2424] gi|116647553|gb|ABK08194.1| ATP-dependent DNA helicase UvrD [Burkholderia cenocepacia HI2424] Length = 787 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 82/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVD 185 >gi|326318047|ref|YP_004235719.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374883|gb|ADX47152.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 818 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 70/221 (31%), Gaps = 46/221 (20%) Query: 19 QTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76 EQL A P A + A AGSGKT +L R+ LL P +L +T T AA Sbjct: 34 NLNDEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQNGYVSPGGILAVTFTNKAAK 93 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM+ R+ ++ G+ + T Sbjct: 94 EMTARLSAMLPV--------------------------------------NVRGMWIGTF 115 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H C +++ A + + F I D + A K +D K + Sbjct: 116 HGLCNRLLRAHHKSAGLPATFQILDTQDQLS----AVKRLCKQFNIDEERFPPKQMAYFI 171 Query: 197 EISNDEDIETLISDI--ISNRTALKLIFFFFSYLWRRKIIE 235 +E + D R ++L + R +++ Sbjct: 172 SGCKEEGLRPGDVDARDADGRKKVELYQLYEEQCQREGVVD 212 >gi|119899502|ref|YP_934715.1| DNA helicase II [Azoarcus sp. BH72] gi|119671915|emb|CAL95829.1| DNA helicase II [Azoarcus sp. BH72] Length = 739 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 79/225 (35%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L++ +Q A P++ A + A AGSGKT +L R+ L+ + A P+ +L +T T Sbjct: 3 NLLANLNEQQHQAVTLPSQHALILAGAGSGKTRVLTTRIAWLVQSGQASPAEILAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + Sbjct: 63 KAAKEMHARLAAMLPI--------------------------------------NTRSMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K L ++ +D+ + + Sbjct: 85 IGTFHGLCNRLLRAHHRDAGLPQLFQILDSGDQLA----AIKRLLKTLNVDDEKFPPREL 140 Query: 193 YEILEISNDEDIETLISDIISN--RTALKLIFFFFSYLWRRKIIE 235 + + + R ++L + + R +++ Sbjct: 141 QHFINGQKEAGFRPHAVEAWDEFTRQRVQLYQEYEAQCQRESVVD 185 >gi|167894600|ref|ZP_02482002.1| DNA helicase II [Burkholderia pseudomallei 7894] gi|167919264|ref|ZP_02506355.1| DNA helicase II [Burkholderia pseudomallei BCC215] Length = 787 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185 >gi|56477926|ref|YP_159515.1| ATP-dependent DNA helicase [Aromatoleum aromaticum EbN1] gi|56313969|emb|CAI08614.1| ATP-dependent DNA helicase [Aromatoleum aromaticum EbN1] Length = 740 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 42/225 (18%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P + A V A AGSGKT +L R+ L+ P +L +T T Sbjct: 3 DLLANLNPEQLQAVTLPPQHALVLAGAGSGKTRVLTTRIAWLVQTGQVDPQGVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA E+ R+ ++ ++ + G+ Sbjct: 63 KAAKELLARLSAMLP----------------------------------LSFNRSARGMW 88 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K L ++ +D+ + + Sbjct: 89 IGTFHGLCNRLLRAHHRDAGLPQLFQILDSGDQLA----AIKRLLKALNVDDEKFPPREL 144 Query: 193 YEILEISNDEDIETLISDIISN--RTALKLIFFFFSYLWRRKIIE 235 + + + + + R ++L + S R +++ Sbjct: 145 QHFINGQKEAGLRPHAVEAWDDYTRRRVELYIEYESQCQRESVVD 189 >gi|254297873|ref|ZP_04965326.1| DNA helicase II [Burkholderia pseudomallei 406e] gi|157806965|gb|EDO84135.1| DNA helicase II [Burkholderia pseudomallei 406e] Length = 787 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185 >gi|288905008|ref|YP_003430230.1| ATP-dependent deoxyribonuclease (subunit A) [Streptococcus gallolyticus UCN34] gi|288731734|emb|CBI13295.1| ATP-dependent deoxyribonuclease (subunit A) [Streptococcus gallolyticus UCN34] Length = 1210 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 80/221 (36%), Gaps = 27/221 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++V+R++ +L L T T AA E+ Sbjct: 29 TPEQIEAIYSYGNNILVSASAGSGKTFVMVERIIDKILRGVTIDQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ + ++ + ++ L L + T+ AF Sbjct: 89 ERIEKKIS-------------------QALQETTDNDLKNYLNEQLLGLQTADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADE-EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ Q+ I+ F I E + L E + M N+ EL + Sbjct: 130 TQKLVNQYGYTLGISPTFRIMTEKSEQDILKNEVFFDLFSDYMTGNDAELFRQLVR--NF 187 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 S + T I+ K+ F + +K + + Sbjct: 188 SGNRKDSTAFRGIV-----YKIYDFSQATDNPQKWLAEVFL 223 >gi|326800328|ref|YP_004318147.1| UvrD/REP helicase [Sphingobacterium sp. 21] gi|326551092|gb|ADZ79477.1| UvrD/REP helicase [Sphingobacterium sp. 21] Length = 761 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 72/222 (32%), Gaps = 48/222 (21%) Query: 14 IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D + Q A + + A AGSGKT ++ RV L+ P +L LT T Sbjct: 1 MDYLQGLNPSQRAAVEQTDGPVMIVAGAGSGKTRVITYRVAHLIQKGIDPFNILVLTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+++++ + + Sbjct: 61 KAAKEMRERIMKVVGNEAK--------------------------------------NIW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNN------ 185 + T H+ I++ ++F I D + SK LI K L + + N Sbjct: 83 MGTFHSVFAKILRVEAHHIGYPANFTIYDTDDSKSLIRSILKEMQLDDKLYNANFVYNRI 142 Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 K E + I+ D R L I+ +S Sbjct: 143 SAAKNNLISAAEYQKNAQIQA--EDQSGGRGNLGQIYQTYSQ 182 >gi|291539996|emb|CBL13107.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis XB6B4] Length = 755 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 82/232 (35%), Gaps = 51/232 (21%) Query: 13 TIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 T+ + +Q A + A AGSGKT +L R L+ +P ++ +T Sbjct: 8 TMSIYDTLNEQQREAVYQTEGPVLILAGAGSGKTRVLTHRTAYLIEEKGVNPYHIMAITF 67 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ +I+ S Sbjct: 68 TNKAAGEMRERIDKIVGFGSE--------------------------------------S 89 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + V T H+ C I+++ ++F I D + SK L+++ K + +D +K Sbjct: 90 IWVSTFHSSCVRILRRHIDRIGFDTNFTIYDADDSKSLMKDICKR----LEIDTKIYKEK 145 Query: 191 AFYEILEISNDEDI-------ETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 +F + + DE I L S + R ++ + L + ++ Sbjct: 146 SFLAAISSAKDELITPTELMQRALTSSDYAKRKQAEVYREYQEALHKNNALD 197 >gi|114326871|ref|YP_744028.1| DNA helicase II [Granulibacter bethesdensis CGDNIH1] gi|114315045|gb|ABI61105.1| DNA helicase II [Granulibacter bethesdensis CGDNIH1] Length = 759 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 40/163 (24%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 +++ EQ A + V A AG+GKT +L R +L + A P+ +L +T T Sbjct: 24 YLARLNPEQRAAVETIDGPLLVLAGAGTGKTRVLTTRFAHILKSGRAFPNQVLAVTFTNK 83 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV I+ E GL + Sbjct: 84 AAREMRERVGAILG--------------------------------------EKVEGLWL 105 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA C ++++ ++S+F+I D + +L+++ ++ Sbjct: 106 GTFHALCARMLRRHAEYVGLSSNFSILDSDDQMRLLKQVAETF 148 >gi|53725443|ref|YP_102655.1| DNA helicase II [Burkholderia mallei ATCC 23344] gi|67642678|ref|ZP_00441431.1| DNA helicase II [Burkholderia mallei GB8 horse 4] gi|121601559|ref|YP_992792.1| DNA helicase II [Burkholderia mallei SAVP1] gi|124385882|ref|YP_001026420.1| DNA helicase II [Burkholderia mallei NCTC 10229] gi|126449241|ref|YP_001080308.1| DNA helicase II [Burkholderia mallei NCTC 10247] gi|167001551|ref|ZP_02267346.1| DNA helicase II [Burkholderia mallei PRL-20] gi|254178093|ref|ZP_04884748.1| DNA helicase II [Burkholderia mallei ATCC 10399] gi|254199592|ref|ZP_04905958.1| DNA helicase II [Burkholderia mallei FMH] gi|254205910|ref|ZP_04912262.1| DNA helicase II [Burkholderia mallei JHU] gi|254358690|ref|ZP_04974963.1| DNA helicase II [Burkholderia mallei 2002721280] gi|52428866|gb|AAU49459.1| DNA helicase II [Burkholderia mallei ATCC 23344] gi|121230369|gb|ABM52887.1| DNA helicase II [Burkholderia mallei SAVP1] gi|124293902|gb|ABN03171.1| DNA helicase II [Burkholderia mallei NCTC 10229] gi|126242111|gb|ABO05204.1| DNA helicase II [Burkholderia mallei NCTC 10247] gi|147749188|gb|EDK56262.1| DNA helicase II [Burkholderia mallei FMH] gi|147753353|gb|EDK60418.1| DNA helicase II [Burkholderia mallei JHU] gi|148027817|gb|EDK85838.1| DNA helicase II [Burkholderia mallei 2002721280] gi|160699132|gb|EDP89102.1| DNA helicase II [Burkholderia mallei ATCC 10399] gi|238523865|gb|EEP87301.1| DNA helicase II [Burkholderia mallei GB8 horse 4] gi|243062656|gb|EES44842.1| DNA helicase II [Burkholderia mallei PRL-20] Length = 787 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLAAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185 >gi|126441559|ref|YP_001058711.1| DNA helicase II [Burkholderia pseudomallei 668] gi|126221052|gb|ABN84558.1| DNA helicase II [Burkholderia pseudomallei 668] Length = 787 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185 >gi|306831079|ref|ZP_07464240.1| ATP-dependent nuclease subunit A [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426645|gb|EFM29756.1| ATP-dependent nuclease subunit A [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 1210 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 81/221 (36%), Gaps = 27/221 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++V+R++ +L L T T AA E+ Sbjct: 29 TPEQIEAIYSYGNNILVSASAGSGKTFVMVERIIDKILRGVTIDQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ + ++ + ++ L L + T+ AF Sbjct: 89 ERIEKKIS-------------------QALQETTDNDLKNYLNEQLLGLQTADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ Q+ I+ F I D+ + L E + M N+ EL + Sbjct: 130 TQKLVNQYGYTLGISPTFRIMTDKSEQDILKNEVFFDLFSDYMTGNDAELFRQLVR--NF 187 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 S + T I+ K+ F + +K + + Sbjct: 188 SGNRKDSTAFRGIV-----YKIYDFSQATDNPQKWLAEVFL 223 >gi|291531717|emb|CBK97302.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Eubacterium siraeum 70/3] Length = 1235 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 32/225 (14%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKA 73 + T ++ + A VSA AGSGKT +L QRV+RL+ N PS ++ +T T Sbjct: 1 MKYTDAQIKAINQGRNPAIVSAGAGSGKTAVLTQRVVRLICDKNENIDPSKIVVVTFTVK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA E+ R + + ++ N++ S L ++ Sbjct: 61 AADELKAR-------------------LDALMRQRINEAVSSADVRFLRNQRMRLRKARI 101 Query: 134 QTIHAFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 TI +FC +++++ A+ I++ F++ DE L + L + ++ + Sbjct: 102 STISSFCISLLRENIDLADNISAGFSVIDETAGGALKNDVLSDVLEDFYANGDKADRDVI 161 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 E +D + +I L + ++ K +++S Sbjct: 162 VENYVAKDDRRLRDII---------LTVHEKAINHTEPEKWLDRS 197 >gi|153009094|ref|YP_001370309.1| UvrD/REP helicase [Ochrobactrum anthropi ATCC 49188] gi|151560982|gb|ABS14480.1| UvrD/REP helicase [Ochrobactrum anthropi ATCC 49188] Length = 864 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 43/192 (22%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D + EQ A V A AG+GKT +L R+ +L A+PS +L +T T Sbjct: 43 DYLKGLNPEQRQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILTTGLAYPSQILAVTFTN 102 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ G Sbjct: 103 KAAREMKERIGHLVGGAVE-------------------------------------GMPW 125 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ ++++ AN+TS F I D + +LI++ + + LD+ + F Sbjct: 126 LGTFHSIGVKLLRRHAELANLTSDFTILDTDDVIRLIKQ----LIQAEGLDDKRWPARTF 181 Query: 193 YEILEISNDEDI 204 +++ ++ Sbjct: 182 ANMIDGWKNKGF 193 >gi|170732770|ref|YP_001764717.1| UvrD/REP helicase [Burkholderia cenocepacia MC0-3] gi|169816012|gb|ACA90595.1| UvrD/REP helicase [Burkholderia cenocepacia MC0-3] Length = 787 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 82/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVD 185 >gi|313884107|ref|ZP_07817873.1| ATP-dependent nuclease subunit A [Eremococcus coleocola ACS-139-V-Col8] gi|312620554|gb|EFR31977.1| ATP-dependent nuclease subunit A [Eremococcus coleocola ACS-139-V-Col8] Length = 1321 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 101/224 (45%), Gaps = 31/224 (13%) Query: 21 KSEQLLASDPTRS-AWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEM 78 EQ A S V+A+AGSGKT +L++R++ +L+ L +T T+AAA EM Sbjct: 14 NDEQWEAIHQDGSNILVAASAGSGKTAVLIERIMTKLIYQGYSIEDFLVVTFTEAAAREM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + + + + ++K LL ++T+H+ Sbjct: 74 KERMSARLKTAVNETLDPVEQQ------------GLTKQNQLLSQA-------NIRTLHS 114 Query: 139 FCEAIMQQFPLEANITSHFA-IADEEQSKKLIEEAKKSTLASIMLDNNEEL----KKAFY 193 FC +++ F + ++F + DE + L +EA ++ + IM+ N L ++ + Sbjct: 115 FCLRVVETFYYLTDFEANFQLVTDETRLLLLYQEAWQNLIEKIMVPNGSVLPNLSQEDYL 174 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 ++++I + + + D + L + F + + ++++ Sbjct: 175 KLVKIHGNSRSDQNLFDRV-----LTIYRFAMAQKDPQSWLDQA 213 >gi|125975357|ref|YP_001039267.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum ATCC 27405] gi|256005497|ref|ZP_05430459.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum DSM 2360] gi|281419317|ref|ZP_06250332.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum JW20] gi|125715582|gb|ABN54074.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum ATCC 27405] gi|255990552|gb|EEU00672.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum DSM 2360] gi|281406937|gb|EFB37200.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum JW20] gi|316939472|gb|ADU73506.1| ATP-dependent DNA helicase PcrA [Clostridium thermocellum DSM 1313] Length = 741 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 70/191 (36%), Gaps = 44/191 (23%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL+ EQ A V A AGSGKT +L R+ L+ N HP+++L +T T Sbjct: 1 MDLLKDLNKEQREAVLHVDGPLLVLAGAGSGKTKVLTHRIAYLIKEKNVHPASILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ S + Sbjct: 61 NKAAREMRERIDRLVEDVS--------------------------------------DSI 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H+ C I+++ + + +F I D + K L + L + K+ Sbjct: 83 WVSTFHSMCVRILRRDIEKIDYDKNFVIFDYADQ----QNVVKDCLKELNLSDKNFPPKS 138 Query: 192 FYEILEISNDE 202 E++ + DE Sbjct: 139 ILEMIGRAKDE 149 >gi|160942246|ref|ZP_02089555.1| hypothetical protein CLOBOL_07132 [Clostridium bolteae ATCC BAA-613] gi|158434803|gb|EDP12570.1| hypothetical protein CLOBOL_07132 [Clostridium bolteae ATCC BAA-613] Length = 780 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 41/163 (25%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 D ++ + E +L ++ + A AGSGKT +L RV L+ +P +L +T T Sbjct: 5 DTLNPMQKEAVLQTE--GPLLILAGAGSGKTRVLTHRVAYLIEEKQVNPWNILAITFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ + + V Sbjct: 63 AAGEMRERVDQLVGFGAE--------------------------------------SIWV 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ C I+++ T++F+I D + K L+++ K+ Sbjct: 85 STFHSTCVRILRRHIEYLGYTTNFSIYDSDDQKTLMKQVFKAM 127 >gi|76811011|ref|YP_333248.1| DNA helicase II [Burkholderia pseudomallei 1710b] gi|126453724|ref|YP_001065963.1| DNA helicase II [Burkholderia pseudomallei 1106a] gi|134282378|ref|ZP_01769083.1| DNA helicase II [Burkholderia pseudomallei 305] gi|167846029|ref|ZP_02471537.1| DNA helicase II [Burkholderia pseudomallei B7210] gi|167903003|ref|ZP_02490208.1| DNA helicase II [Burkholderia pseudomallei NCTC 13177] gi|167911242|ref|ZP_02498333.1| DNA helicase II [Burkholderia pseudomallei 112] gi|217423664|ref|ZP_03455165.1| DNA helicase II [Burkholderia pseudomallei 576] gi|226192893|ref|ZP_03788505.1| DNA helicase II [Burkholderia pseudomallei Pakistan 9] gi|242316612|ref|ZP_04815628.1| DNA helicase II [Burkholderia pseudomallei 1106b] gi|254180038|ref|ZP_04886637.1| DNA helicase II [Burkholderia pseudomallei 1655] gi|254188552|ref|ZP_04895063.1| DNA helicase II [Burkholderia pseudomallei Pasteur 52237] gi|254261076|ref|ZP_04952130.1| DNA helicase II [Burkholderia pseudomallei 1710a] gi|76580464|gb|ABA49939.1| DNA helicase II [Burkholderia pseudomallei 1710b] gi|126227366|gb|ABN90906.1| DNA helicase II [Burkholderia pseudomallei 1106a] gi|134246416|gb|EBA46505.1| DNA helicase II [Burkholderia pseudomallei 305] gi|157936231|gb|EDO91901.1| DNA helicase II [Burkholderia pseudomallei Pasteur 52237] gi|184210578|gb|EDU07621.1| DNA helicase II [Burkholderia pseudomallei 1655] gi|217393522|gb|EEC33543.1| DNA helicase II [Burkholderia pseudomallei 576] gi|225934983|gb|EEH30958.1| DNA helicase II [Burkholderia pseudomallei Pakistan 9] gi|242139851|gb|EES26253.1| DNA helicase II [Burkholderia pseudomallei 1106b] gi|254219765|gb|EET09149.1| DNA helicase II [Burkholderia pseudomallei 1710a] Length = 787 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185 >gi|40063254|gb|AAR38081.1| DNA helicase II [uncultured marine bacterium 577] Length = 749 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 78/224 (34%), Gaps = 46/224 (20%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 L+S +EQL A +SA V A AGSGKT +L R+ L+ + P ++L +T T Sbjct: 4 LLSSLNNEQLKAVTLQDQSALVLAGAGSGKTRVLTTRIAYLIQSRQVSPHSILAVTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++ G+ V Sbjct: 64 AAKEMLMRVSAMLPI--------------------------------------NTQGMWV 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ +A + F I D +I K L I D+ + + Sbjct: 86 GTFHGLCHRMLRAHYQDAGLPQAFQILDSADQLAVI----KRVLKDINADSEKFPPRQVQ 141 Query: 194 EILEISNDEDIETLISDIISN--RTALKLIFFFFSYLWRRKIIE 235 + + D I + + R + + + +++ Sbjct: 142 WFINNAKDGGIRGSQVEASDDFTRKMAEFYLVYEQQCNKEGVVD 185 >gi|254252587|ref|ZP_04945905.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158] gi|124895196|gb|EAY69076.1| Superfamily I DNA and RNA helicase [Burkholderia dolosa AUO158] Length = 786 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + ++ +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKTLNVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPDKVDASDNFNRKFVELYQAYDQQCQREGVVD 185 >gi|293400338|ref|ZP_06644484.1| putative ATP-dependent nuclease subunit A [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306738|gb|EFE47981.1| putative ATP-dependent nuclease subunit A [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 1081 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 31/204 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74 + + + ++ VSA+AGSGKT +L+ R++ L++ + P +L +T T+AA Sbjct: 1 MPNWNPQQLKAIQTKDKNIMVSASAGSGKTTVLIARLMDLVVKDRVPIDAILAMTFTEAA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM R L+A + K + + + R + L + + Sbjct: 61 ASEMKKR---------------LAASLQKAYEETKDPEE----RAYITRQLTSIQTAHIS 101 Query: 135 TIHAFCEAIMQQFPLEANITSH--FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 TIH+FC +I+Q++ + + I D EA L + + K F Sbjct: 102 TIHSFCLSILQEYYYMIGLDATRITNIMDNGTMVLYQGEA----LEEAFQNQYAKQDKVF 157 Query: 193 YEI-----LEISNDEDIETLISDI 211 ++ NDE + LI+ + Sbjct: 158 IDLCAMFSSRSENDEALRKLITSL 181 >gi|297158179|gb|ADI07891.1| ATP-dependent DNA helicase II [Streptomyces bingchenggensis BCW-1] Length = 829 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78 + ++ + A AGSGKT +L R+ LL HP +L +T T AA EM Sbjct: 72 NEQQRGAVVHTGSPLLIVAGAGSGKTRVLTHRIAYLLGARGVHPGQILAITFTNKAAGEM 131 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV E++ + + V T H+ Sbjct: 132 KERVEELVGPRA--------------------------------------NAMWVSTFHS 153 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + TS F+I D SK+L+ + Sbjct: 154 ACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRDL 191 >gi|258542141|ref|YP_003187574.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01] gi|256633219|dbj|BAH99194.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01] gi|256636278|dbj|BAI02247.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-03] gi|256639331|dbj|BAI05293.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-07] gi|256642387|dbj|BAI08342.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-22] gi|256645442|dbj|BAI11390.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-26] gi|256648495|dbj|BAI14436.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-32] gi|256651548|dbj|BAI17482.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654539|dbj|BAI20466.1| DNA helicase II UvrD/Rep [Acetobacter pasteurianus IFO 3283-12] Length = 743 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 44/192 (22%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 + +++ EQ A + T V A AG+GKT +L R +LL A P +L +T T Sbjct: 22 NYLARLNPEQRAAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLTGRAKPWQILTVTFTN 81 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + + GL Sbjct: 82 KAAREMRERIGLLLGSPAE--------------------------------------GLW 103 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T HA C ++++ +T F I D + +L+++ +A +D Sbjct: 104 LGTFHALCARMLRRHAEYVGLTQSFTILDTDDQLRLLKQ----VMAPWQIDIKRWPAPGL 159 Query: 193 YEILEISNDEDI 204 +++ D + Sbjct: 160 LGVIQRWKDRGL 171 >gi|239929399|ref|ZP_04686352.1| ATP-dependent DNA helicase II [Streptomyces ghanaensis ATCC 14672] gi|291437725|ref|ZP_06577115.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672] gi|291340620|gb|EFE67576.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672] Length = 835 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 41/171 (23%) Query: 7 FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTL 65 + + ++ ++ ++ + A AGSGKT +L R+ LL HP + Sbjct: 63 ALDSAALLEGLNDN--QRAAVVHSGSPLLIVAGAGSGKTRVLTHRIAYLLAERGVHPGQI 120 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T AA EM RV +++ + Sbjct: 121 LAITFTNKAAGEMKERVEQLVGPRA----------------------------------- 145 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ + TS F+I D SK+L+ + Sbjct: 146 ---NAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRDL 193 >gi|254788455|ref|YP_003075884.1| DNA-dependent helicase II [Teredinibacter turnerae T7901] gi|237683747|gb|ACR11011.1| DNA helicase II [Teredinibacter turnerae T7901] Length = 728 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 74/196 (37%), Gaps = 40/196 (20%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 S + ++ + E + A P + V A AGSGKT +LV R+ L+ P ++ +T Sbjct: 4 SPLVKDLNSAQREAVAA--PLGNQLVLAGAGSGKTRVLVHRIAWLMEQQSVSPHQVMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ +I L + + Sbjct: 62 FTNKAAREMRERLTHLIGD------------------------------RLGPRGVHS-- 89 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + V T H +++ EA ++ +F I D + +LI+ + ++ LD++ Sbjct: 90 -MWVGTFHGIAHRLLKAHWQEAGLSQNFQIMDSDDQLRLIKRIYQ----TLALDDSRWPV 144 Query: 190 KAFYEILEISNDEDIE 205 K + DE + Sbjct: 145 KQAQWYINNQKDEGLR 160 >gi|94988280|ref|YP_596381.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS9429] gi|251764560|sp|Q1JMH5|ADDA_STRPC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|94541788|gb|ABF31837.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS9429] Length = 1222 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 93/238 (39%), Gaps = 28/238 (11%) Query: 7 FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 QE+ D + ++Q+ A ++ VSA+AGSGKT ++V+R+L +L L Sbjct: 28 LQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 T T AA E+ R+ + + + + + + L L Sbjct: 88 FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184 ++ G + T+ AF + ++ ++ I+S F I D+ + L +E + M Sbjct: 129 QSLGQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQK 188 Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 + +A + S + + +++ F S + ++++ S A Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239 >gi|291537470|emb|CBL10582.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis M50/1] Length = 747 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 79/225 (35%), Gaps = 51/225 (22%) Query: 20 TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +Q A + A AGSGKT +L R L+ +P ++ +T T AA E Sbjct: 7 LNEQQREAVYQTEGPVLILAGAGSGKTRVLTHRTAYLIEEKGVNPYHIMAITFTNKAAGE 66 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ +I+ S + V T H Sbjct: 67 MRERIDKIVGFGSE--------------------------------------SIWVSTFH 88 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 + C I+++ ++F I D + SK L+++ K + +D +K+F + Sbjct: 89 SSCVRILRRHIDRIGFDTNFTIYDADDSKSLMKDICKR----LEIDTKIYKEKSFLAAIS 144 Query: 198 ISNDEDI-------ETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 + DE I L S + R ++ + L + ++ Sbjct: 145 SAKDELITPTELMQRALTSSDYAKRKQAEVYREYQEALHKNNALD 189 >gi|86131067|ref|ZP_01049666.1| UvrD/REP helicase [Dokdonia donghaensis MED134] gi|85818478|gb|EAQ39638.1| UvrD/REP helicase [Dokdonia donghaensis MED134] Length = 1045 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 92/209 (44%), Gaps = 12/209 (5%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLE 84 ++ ++A+AGSGKT+ LV++ + LL + P+ LL +T T A AEM +RVLE Sbjct: 2 TEKNTFIVLNASAGSGKTYSLVKQYITTLLKSKDPNKFRHLLAITFTNKAVAEMKNRVLE 61 Query: 85 IITAWSHLSDEILSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + A + + P + K++ +L IL + TI Sbjct: 62 TLKAIGDYKQGDKPDMLDDLASASNLPVDEVVHKSKEILNRILHNYAAFDIVTIDTLTHR 121 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 I++ F + NI+S F + K L +A + +A + +D+ + + + +D+ Sbjct: 122 IIRTFAKDLNISSSFEV--SLDQKTLSAQAVDALVAKVGVDDTITKVLVDFALEKADDDK 179 Query: 203 DIE---TL--ISDIISNRTALKLIFFFFS 226 + L I+ ++ N LK + S Sbjct: 180 SWDISRDLLEIASLLHNENDLKALELLKS 208 >gi|255692465|ref|ZP_05416140.1| ATP-dependent DNA helicase PcrA [Bacteroides finegoldii DSM 17565] gi|260621733|gb|EEX44604.1| ATP-dependent DNA helicase PcrA [Bacteroides finegoldii DSM 17565] Length = 789 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 58/164 (35%), Gaps = 38/164 (23%) Query: 14 IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 I+ I + Q A + V A AGSGKT +L ++ LL +P +L LT T Sbjct: 3 INYIKELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ + A +AR+L Sbjct: 63 KAAREMKERIARQVGA--------------------------ERARYL-----------W 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ TS F I D SK L+ K Sbjct: 86 MGTFHSIFSRILRAEAQYIGFTSQFTIYDTADSKSLLRSIIKEM 129 >gi|240146225|ref|ZP_04744826.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis L1-82] gi|257201636|gb|EEU99920.1| ATP-dependent DNA helicase PcrA [Roseburia intestinalis L1-82] Length = 755 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 82/232 (35%), Gaps = 51/232 (21%) Query: 13 TIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 T+ + +Q A + A AGSGKT +L R L+ +P ++ +T Sbjct: 8 TMSIYDTLNEQQREAVYQTEGPVLILAGAGSGKTRVLTHRTAYLIEEKGVNPYHIMAITF 67 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ +I+ S Sbjct: 68 TNKAAGEMRERIDKIVGFGSE--------------------------------------S 89 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + V T H+ C I+++ ++F I D + SK L+++ K + +D +K Sbjct: 90 IWVSTFHSSCVRILRRHIDRIGFDTNFTIYDADDSKSLMKDICKR----LEIDTKIYKEK 145 Query: 191 AFYEILEISNDEDI-------ETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 +F + + DE I L S + R ++ + L + ++ Sbjct: 146 SFLAAISSAKDELITPTELMRRALTSSDYAKRKQAEVYREYQEALHKNNALD 197 >gi|302670353|ref|YP_003830313.1| ATP-dependent DNA helicase PcrA [Butyrivibrio proteoclasticus B316] gi|302394826|gb|ADL33731.1| ATP-dependent DNA helicase PcrA [Butyrivibrio proteoclasticus B316] Length = 847 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ + A AGSGKT +L RV L+ N +P ++ +T T AA EM Sbjct: 8 NSQQKKAVLQTDGPVLILAGAGSGKTRVLTHRVAYLIDECNVNPWNIMAITFTNKAAGEM 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +I+ + + V T H+ Sbjct: 68 RERVDKIVGFGAE--------------------------------------SIWVSTFHS 89 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 C I++++ + +++F I D + SK L+++ K Sbjct: 90 SCVRILRRYADKLGFSNNFTIYDTDDSKTLMKDICK 125 >gi|251764599|sp|Q1JCJ8|ADDA_STRPB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA Length = 1222 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 93/238 (39%), Gaps = 28/238 (11%) Query: 7 FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 QE+ D + ++Q+ A ++ VSA+AGSGKT ++V+R+L +L L Sbjct: 28 LQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 T T AA E+ R+ + + + + + + L L Sbjct: 88 FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184 ++ G + T+ AF + ++ ++ I+S F I D+ + L +E + M Sbjct: 129 QSLGQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQK 188 Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 + +A + S + + +++ F S + ++++ S A Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239 >gi|239814543|ref|YP_002943453.1| UvrD/REP helicase [Variovorax paradoxus S110] gi|239801120|gb|ACS18187.1| UvrD/REP helicase [Variovorax paradoxus S110] Length = 809 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 76/223 (34%), Gaps = 45/223 (20%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L + ++ + P +A + A AGSGKT +L R+ LL P +L +T T A Sbjct: 24 LANLNPEQRAAVTLPAGNALILAGAGSGKTRVLTTRIAWLLQTGQVSPGGILAVTFTNKA 83 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ G+ + Sbjct: 84 AKEMMTRLTAMLPV--------------------------------------NVRGMWIG 105 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H C ++ AN+ S F I D + A K + +D+ K Sbjct: 106 TFHGLCNRFLRAHWKLANLPSTFQILDTQDQLS----AIKRLMKQFNVDDERFPAKQTQW 161 Query: 195 ILEISNDEDIETLISDI--ISNRTALKLIFFFFSYLWRRKIIE 235 + + ++ + +I +R ++L + R +++ Sbjct: 162 FIAGAKEDGLRPKDVEIRTEDDRKKVELYQLYEEQCQREGVVD 204 >gi|53719591|ref|YP_108577.1| putative helicase [Burkholderia pseudomallei K96243] gi|52210005|emb|CAH35978.1| putative helicase [Burkholderia pseudomallei K96243] Length = 787 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185 >gi|300021793|ref|YP_003754404.1| UvrD/REP helicase [Hyphomicrobium denitrificans ATCC 51888] gi|299523614|gb|ADJ22083.1| UvrD/REP helicase [Hyphomicrobium denitrificans ATCC 51888] Length = 818 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 69/193 (35%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ ++ V A AG+GKT +L R+ +L A+PS +L +T T Sbjct: 62 YLDGLN--PEQREAVETTEGPLLVLAGAGTGKTRVLTTRIAHILATGKAYPSQILAVTFT 119 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +I G Sbjct: 120 NKAAREMRDRIGGLIGGTLE-------------------------------------GMS 142 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ I+++ + S F I D++ +L+++ + + LD + + Sbjct: 143 WLGTFHSIGVKILRRHAELVGLKSGFTILDDDDQVRLLKQ----VIEAARLDKDRWPARQ 198 Query: 192 FYEILEISNDEDI 204 +++ + + Sbjct: 199 LAGLIDSWKNRGL 211 >gi|83720350|ref|YP_443147.1| DNA helicase II [Burkholderia thailandensis E264] gi|167582159|ref|ZP_02375033.1| DNA helicase II [Burkholderia thailandensis TXDOH] gi|167620316|ref|ZP_02388947.1| DNA helicase II [Burkholderia thailandensis Bt4] gi|257139377|ref|ZP_05587639.1| DNA helicase II [Burkholderia thailandensis E264] gi|83654175|gb|ABC38238.1| DNA helicase II [Burkholderia thailandensis E264] Length = 787 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHFRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPDKVDATDSFNRKFVELYQAYDQQCQREGVVD 185 >gi|317472670|ref|ZP_07931985.1| ATP-dependent DNA helicase PcrA [Anaerostipes sp. 3_2_56FAA] gi|316899847|gb|EFV21846.1| ATP-dependent DNA helicase PcrA [Anaerostipes sp. 3_2_56FAA] Length = 735 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 44/188 (23%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 D +++ + E + ++ + A AGSGKT +L R+ L+ +P ++ +T T A Sbjct: 5 DTLNEQQREAVFCTE--GPLLLLAGAGSGKTRVLTHRIAYLIEQGVNPYHIMAITFTNKA 62 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ + + + V Sbjct: 63 AREMRERVDALVGSGAEH--------------------------------------IWVS 84 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C I+++ + + F I D + K LI K +D ++A Sbjct: 85 TFHSTCVRILRRHIDKLGYDNSFTIYDSDDQKSLIRGICKQF----KVDTKSLPERAVMN 140 Query: 195 ILEISNDE 202 + + DE Sbjct: 141 AISSAKDE 148 >gi|167748917|ref|ZP_02421044.1| hypothetical protein ANACAC_03698 [Anaerostipes caccae DSM 14662] gi|167651539|gb|EDR95668.1| hypothetical protein ANACAC_03698 [Anaerostipes caccae DSM 14662] Length = 735 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 69/188 (36%), Gaps = 44/188 (23%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 D +++ + E + ++ + A AGSGKT +L R+ L+ +P ++ +T T A Sbjct: 5 DTLNEQQREAVFCTE--GPLLLLAGAGSGKTRVLTHRIAYLIEQGVNPYHIMAITFTNKA 62 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ + + + V Sbjct: 63 AREMRERVDALVGSGAEH--------------------------------------IWVS 84 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C I+++ + + F I D + K LI K +D ++A Sbjct: 85 TFHSTCVRILRRHIDKLGYDNSFTIYDSDDQKSLIRGICKQF----KVDTKSLPERAVMN 140 Query: 195 ILEISNDE 202 + + DE Sbjct: 141 AISSAKDE 148 >gi|168183573|ref|ZP_02618237.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Bf] gi|237796712|ref|YP_002864264.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Ba4 str. 657] gi|182673320|gb|EDT85281.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Bf] gi|229262342|gb|ACQ53375.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum Ba4 str. 657] Length = 738 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL ++ EQ A+ + A AGSGKT +L R+ ++ N +PS +L +T T Sbjct: 1 MDLKNKLNKEQYEAATTIDGPLLILAGAGSGKTRVLTHRIAHMIENLNIYPSKILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ G+ Sbjct: 61 NKAAGEMKERIKALVGDVVE--------------------------------------GM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + +F I D K L+++ + Sbjct: 83 WVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCMEEL 127 >gi|167738899|ref|ZP_02411673.1| DNA helicase II [Burkholderia pseudomallei 14] Length = 370 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185 >gi|114330786|ref|YP_747008.1| UvrD/REP helicase [Nitrosomonas eutropha C91] gi|114307800|gb|ABI59043.1| ATP-dependent DNA helicase UvrD [Nitrosomonas eutropha C91] Length = 748 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 43/193 (22%), Positives = 67/193 (34%), Gaps = 44/193 (22%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L++ EQL A P +SA + A AGSGKT +L R+ LL + P LL +T T Sbjct: 4 LLTDLNPEQLEAVTWPHQSALILAGAGSGKTRVLTTRIAYLLQSGLTQPQNLLAVTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ G+ + Sbjct: 64 AAREMVARISTMLPI--------------------------------------NIRGMWI 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ +A + F I D +I K L LD + Sbjct: 86 GTFHGLCHRMLRAHYEDAGLPQAFQILDMADQLAVI----KRILKERSLDEKVLAPRQLQ 141 Query: 194 EILEISNDEDIET 206 + + +E + Sbjct: 142 WFINNAKEEGLRA 154 >gi|330837379|ref|YP_004412020.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374] gi|329749282|gb|AEC02638.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374] Length = 1218 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 78/185 (42%), Gaps = 33/185 (17%) Query: 15 DLISQTKSE----QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 D++++T Q A D + VSA AGSGKT +L R +RLL+ AH +L LT Sbjct: 20 DVLARTGRRLDDNQRRAVDCDSNCVVSAGAGSGKTTVLTYRFIRLLIEGKAHADQILTLT 79 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T+ AAAEM R+ ++++ L+ + L Sbjct: 80 FTRKAAAEMHERIHALVSSLRDDP--------------------------LMASELARFP 113 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 ++ T+ +FC AI++ + IT F+I D+ ++ S L + D L Sbjct: 114 QAQISTLDSFCSAIVRSDCIRYGITGDFSIDDDATTR--FASVVASRLLADAQDEGARLL 171 Query: 190 KAFYE 194 FY Sbjct: 172 SVFYS 176 >gi|212696136|ref|ZP_03304264.1| hypothetical protein ANHYDRO_00672 [Anaerococcus hydrogenalis DSM 7454] gi|212676765|gb|EEB36372.1| hypothetical protein ANHYDRO_00672 [Anaerococcus hydrogenalis DSM 7454] Length = 730 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 57/165 (34%), Gaps = 39/165 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +DL + ++ V A AGSGKT +L + L+ +P+ +L +T T Sbjct: 1 MMDLSNLNDKQKEAVLHEKGPLLVVAGAGSGKTRVLTTSISYLIKEKFVNPTNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ E L Sbjct: 61 NKAANEMKERISNLLN--------------------------------------EDVSHL 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I++ + ++F I D K L++E K Sbjct: 83 WIGTFHSICARILRMNINKIGYDNNFTIYDTNDQKTLVKEIIKDL 127 >gi|315608146|ref|ZP_07883138.1| ATP-dependent DNA helicase PcrA [Prevotella buccae ATCC 33574] gi|315250115|gb|EFU30112.1| ATP-dependent DNA helicase PcrA [Prevotella buccae ATCC 33574] Length = 819 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 67/180 (37%), Gaps = 38/180 (21%) Query: 13 TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 +DL+S+ Q A + + V A AGSGKT +L ++ LL P +L LT T Sbjct: 1 MVDLLSELNDSQREAVEYIDGPSLVIAGAGSGKTRVLTYKIAYLLQRGVRPYNILALTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +++ L L Sbjct: 61 NKAATEMKARIGKLVGERDAL-------------------------------------AL 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 ++ T H+ I++ S+F I DE S+ LI+ K A + ++ K A Sbjct: 84 RMGTFHSVFSRILRVEAAHIGYNSNFTIYDESDSRSLIKTIVKELAAGNEKMDEKQYKSA 143 >gi|119503547|ref|ZP_01625630.1| DNA helicase II [marine gamma proteobacterium HTCC2080] gi|119460609|gb|EAW41701.1| DNA helicase II [marine gamma proteobacterium HTCC2080] Length = 721 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 73/199 (36%), Gaps = 45/199 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ + ++ + + + A + + V A AGSGKT +LV R+ L+ P LL Sbjct: 2 DVSDILTDLNAAQRDAVAAE--SGNLLVLAGAGSGKTRVLVHRMAWLIRAEGVSPHALLS 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ ++ + Sbjct: 60 VTFTNKAAREMRSRIESMLDVSTQ------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ V T H +++Q EA + +F I D + +L++ + + LD + Sbjct: 84 --GMWVGTFHGLAHRLLKQHWQEAQLPQNFQILDSDDQLRLVKRVCRD----LNLDEAQW 137 Query: 188 LKKAFYEILEISNDEDIET 206 + + DE + Sbjct: 138 PPRQAQWYINGQKDEGLRA 156 >gi|171319519|ref|ZP_02908620.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5] gi|171095259|gb|EDT40249.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5] Length = 787 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVD 185 >gi|170702107|ref|ZP_02893019.1| UvrD/REP helicase [Burkholderia ambifaria IOP40-10] gi|170132982|gb|EDT01398.1| UvrD/REP helicase [Burkholderia ambifaria IOP40-10] Length = 787 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVD 185 >gi|326405601|gb|ADZ62672.1| ATP-dependent nuclease, subunit A [Lactococcus lactis subsp. lactis CV56] Length = 1203 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 35/230 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + T + ++ VSA+AGSGKT ++ QR++ + L T TK AA+ Sbjct: 4 VKLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAAS 63 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R+ + + SD ++AR L L+ + T+ Sbjct: 64 ELRMRLERDLKK------------------ARQESSDENQARRL-TLALQNLSNADIGTM 104 Query: 137 HAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNN------EELK 189 +F + + + NI +F I D+ +S + +E + + S + +++ E+ + Sbjct: 105 DSFTQKLTKTNFNRVNIDPNFRILADQTESDLIRQEVFEQLVESYLSEDDGLNISKEKFE 164 Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + + N + ++ I F + K +E Sbjct: 165 ELIKNFSKDRNIAGFQKVVYTI---------YRFASATENPIKWLENQFL 205 >gi|209364296|ref|YP_001425453.2| DNA-dependent helicase II [Coxiella burnetii Dugway 5J108-111] gi|207082229|gb|ABS78395.2| DNA helicase II [Coxiella burnetii Dugway 5J108-111] Length = 723 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 71/199 (35%), Gaps = 45/199 (22%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 S E+ ++ ++ + E + P V A AGSGKT +L R+ L+ N P + Sbjct: 2 SGMENLSLLESLNPPQKE--AVTSPFDHVLVLAGAGSGKTRVLTHRIAWLIQQKNVSPYS 59 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ Sbjct: 60 ILAVTFTNKAAYEMRGRIESMLGMP----------------------------------- 84 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 G + V T H +++ +A + F I D + +LI ++ ++ L+ Sbjct: 85 ---MGAMWVGTFHGLAHRLLRAHWKDAGLPQSFQILDTDDQYRLIRRMQR----NLNLEE 137 Query: 185 NEELKKAFYEILEISNDED 203 ++ K + +E Sbjct: 138 SQWPPKQTQWFINKQKEEG 156 >gi|331085909|ref|ZP_08334992.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406832|gb|EGG86337.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 741 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ + A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 8 NAEQREAVFHTEGPLLILAGAGSGKTRVLTHRIAYLIEEKGINPWNILAITFTNKAAGEM 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +I+ S + V T H+ Sbjct: 68 RERVDDIVGFGSE--------------------------------------SIWVSTFHS 89 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 C I+++ ++F I D + K L+++ K Sbjct: 90 TCVRILRRHIDRLGYDNNFTIYDSDDQKTLMKDVCK 125 >gi|294507833|ref|YP_003571891.1| ATP-dependent exoDNAse [Salinibacter ruber M8] gi|294344161|emb|CBH24939.1| ATP-dependent exoDNAse [Salinibacter ruber M8] Length = 1141 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 20/185 (10%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 L A +P + +V A AGSGKT LV R++ L+ + L +T T+ AA EMS R E Sbjct: 31 LSAFEPDTNFFVRAAAGSGKTTALVARMVALVRSGVPVEDLTAITFTRKAAGEMSKRFYE 90 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 E+ + Q P + R + L + TIHAFC ++ Sbjct: 91 ---------------ELRRAQTALPAEGP---QRRRVTAALRDAQQAFIGTIHAFCARLL 132 Query: 145 QQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN-DE 202 ++ P+ A++ F ++ + ++L + A + L ++ D ++ LE + D Sbjct: 133 RERPIAADLPPGFVAGLEDREERELRDRAWQDYLQTVRADRPARMEALTSLGLEPEDLDA 192 Query: 203 DIETL 207 E L Sbjct: 193 YFERL 197 >gi|170782918|ref|YP_001711252.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp. sepedonicus] gi|169157488|emb|CAQ02679.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis subsp. sepedonicus] Length = 815 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 72/192 (37%), Gaps = 41/192 (21%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++ ++ + E ++ P V A AGSGKT +L R+ L+ + A PS +L +T T Sbjct: 34 LLEGLNPEQREAVVYRGPA--LLVVAGAGSGKTRVLTHRIASLIESREAWPSQILAITFT 91 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM RV ++ S G+ Sbjct: 92 NKAAAEMRERVESLLGQASE--------------------------------------GM 113 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C I+++ T +F I D S+ LI+ K A + + Sbjct: 114 WISTFHSACVRILRREAEAFGFTQNFTIYDSADSRVLIKRIIKQLDADTLGFTVSSVSGR 173 Query: 192 FYEILEISNDED 203 ++ +D D Sbjct: 174 ISKLKNELSDAD 185 >gi|22300001|ref|NP_683248.1| ATP-dependent helicase [Thermosynechococcus elongatus BP-1] gi|22296186|dbj|BAC10010.1| ATP-dependent helicase [Thermosynechococcus elongatus BP-1] Length = 773 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 17/171 (9%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D ++ Q A + + V A AGSGKT L R+ L+ + P +L +T T Sbjct: 4 DFLTGLNPSQRQAVEHYSGPLLVVAGAGSGKTRTLTYRIAHLIRHHQVAPEHILAVTFTN 63 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ + + + ++ ++ + ++ + R + P L Sbjct: 64 KAAREMKERIETLFS-------QEMAQQLYGRDWLDLSPAEQRRVRSRVYHTYTQP--LW 114 Query: 133 VQTIHAFCEAIMQ------QFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 + T H+ C +++ Q P T HF I DE + LI++ L Sbjct: 115 IGTFHSLCARLLRLEIEAYQHPQGYRWTRHFTIFDESDVQSLIKQIVTGEL 165 >gi|325662111|ref|ZP_08150729.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 4_1_37FAA] gi|325471560|gb|EGC74780.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 4_1_37FAA] Length = 741 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ + A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 8 NAEQREAVFHTEGPLLILAGAGSGKTRVLTHRIAYLIEEKGINPWNILAITFTNKAAGEM 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +I+ S + V T H+ Sbjct: 68 RERVDDIVGFGSE--------------------------------------SIWVSTFHS 89 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 C I+++ ++F I D + K L+++ K Sbjct: 90 TCVRILRRHIDRLGYDNNFTIYDSDDQKTLMKDVCK 125 >gi|169237545|ref|YP_001690749.1| putative helicase [Halobacterium salinarum R1] gi|167728772|emb|CAP15640.1| putative helicase [Halobacterium salinarum R1] Length = 1211 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 31/222 (13%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAA 76 Q EQ A R+ ++A AG+GKT L +R + +L N P ++ +T T+ AAA Sbjct: 9 QLTEEQEDALVQGRNVAITAGAGTGKTTTLTERYVTILAENPSLTPENIITITFTRKAAA 68 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E++ RV E + + D +A + +L+ V TI Sbjct: 69 ELTERVREEVYD-------------------RLEAVDSPEAYNRWRNVLDDLEDGYVHTI 109 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HAFC ++++ +EA + F + DE+ + L E L D++ L + Sbjct: 110 HAFCARLLRERAVEAPVPLGFDVLDEDGAATLQREVVTEFLERNQDDDDVAL------LA 163 Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 ++ + + +++ ++ R + + WR ++ + Sbjct: 164 QLWGRDQLVDVLAGLLDERPQSESVL----EAWRDADVDDYV 201 >gi|71903240|ref|YP_280043.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS6180] gi|123640147|sp|Q48UB8|ADDA_STRPM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|71802335|gb|AAX71688.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS6180] Length = 1222 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 93/238 (39%), Gaps = 28/238 (11%) Query: 7 FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 QE+ D + ++Q+ A ++ VSA+AGSGKT ++V+R+L +L L Sbjct: 28 LQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 T T AA E+ R+ + + + + + + L L Sbjct: 88 FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184 ++ G + T+ AF + ++ ++ I+S F I D+ + L +E + M Sbjct: 129 QSLGQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQK 188 Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 + +A + S + + +++ F S + ++++ S A Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239 >gi|318058788|ref|ZP_07977511.1| ATP-dependent DNA helicase II [Streptomyces sp. SA3_actG] gi|318075472|ref|ZP_07982804.1| ATP-dependent DNA helicase II [Streptomyces sp. SA3_actF] Length = 829 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 57/162 (35%), Gaps = 39/162 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L + + A AGSGKT +L R+ LL HP +L +T T A Sbjct: 71 LTGLNPEQAAAVVHSGSPLLIVAGAGSGKTRVLTHRIAYLLGRRGVHPGAILAITFTNKA 130 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +++ + G + V Sbjct: 131 AGEMKERVEQLVGPRA--------------------------------------GAMWVS 152 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ C I+++ + TS F+I D SK+L+ + Sbjct: 153 TFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRDL 194 >gi|256785725|ref|ZP_05524156.1| ATP-dependent DNA helicase II [Streptomyces lividans TK24] gi|289769617|ref|ZP_06528995.1| ATP-dependent DNA helicase PcrA [Streptomyces lividans TK24] gi|289699816|gb|EFD67245.1| ATP-dependent DNA helicase PcrA [Streptomyces lividans TK24] Length = 831 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 41/171 (23%) Query: 7 FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTL 65 + + ++ +++ ++ + A AGSGKT +L R+ LL N HP + Sbjct: 63 ALDAAALLEGLNEN--QRAAVVHSGSPLLIVAGAGSGKTRVLTHRIAHLLAERNVHPGQI 120 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T AA EM RV +++ + Sbjct: 121 LAITFTNKAAGEMKERVEQLVGPRA----------------------------------- 145 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ + TS F+I D SK+L+ + Sbjct: 146 ---NAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRDL 193 >gi|302519556|ref|ZP_07271898.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB78] gi|302428451|gb|EFL00267.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. SPB78] Length = 829 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 57/162 (35%), Gaps = 39/162 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L + + A AGSGKT +L R+ LL HP +L +T T A Sbjct: 71 LTGLNPEQAAAVVHSGSPLLIVAGAGSGKTRVLTHRIAYLLGRRGVHPGAILAITFTNKA 130 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +++ + G + V Sbjct: 131 AGEMKERVEQLVGPRA--------------------------------------GAMWVS 152 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ C I+++ + TS F+I D SK+L+ + Sbjct: 153 TFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRDL 194 >gi|226938999|ref|YP_002794070.1| UvrD [Laribacter hongkongensis HLHK9] gi|226713923|gb|ACO73061.1| UvrD [Laribacter hongkongensis HLHK9] Length = 710 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 68/192 (35%), Gaps = 43/192 (22%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 D ++ QL A A V A AGSGKT +L R+ LL A P+++L +T T Sbjct: 4 DFLAGLNPAQLAAVTTRSHALVLAGAGSGKTRVLTSRIAWLLREGLASPASVLAVTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++ P + + Sbjct: 64 AAREMQTRVGAMLPV--------------------------------------NPRMMWI 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H +++ +A + + F I D + A K L ++ L ++ + Sbjct: 86 GTFHGLAHRLLRLHHRDAGLPATFTILDSQDQLA----AIKRLLKALNLSDDTYPPRQLM 141 Query: 194 EILEISNDEDIE 205 + + ++ + Sbjct: 142 QFINRHKEQGLR 153 >gi|21223175|ref|NP_628954.1| ATP-dependent DNA helicase II [Streptomyces coelicolor A3(2)] gi|8218198|emb|CAB92660.1| putative ATP-dependent DNA helicase II [Streptomyces coelicolor A3(2)] Length = 831 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 41/171 (23%) Query: 7 FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTL 65 + + ++ +++ ++ + A AGSGKT +L R+ LL N HP + Sbjct: 63 ALDAAALLEGLNEN--QRAAVVHSGSPLLIVAGAGSGKTRVLTHRIAHLLAERNVHPGQI 120 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T AA EM RV +++ + Sbjct: 121 LAITFTNKAAGEMKERVEQLVGPRA----------------------------------- 145 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ + TS F+I D SK+L+ + Sbjct: 146 ---NAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRDL 193 >gi|319655031|ref|ZP_08009102.1| PcrA protein [Bacillus sp. 2_A_57_CT2] gi|317393298|gb|EFV74065.1| PcrA protein [Bacillus sp. 2_A_57_CT2] Length = 743 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 45/192 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 + ++ ++ +Q + A AGSGKT +L R+ L++ +P +L +T Sbjct: 7 KLLNGLN--PQQQNAVKTTDGPLLIMAGAGSGKTRVLTHRIAYLMVEKGVNPYNILAITF 64 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + Sbjct: 65 TNKAAREMRDRIHNMMGGAA--------------------------------------DE 86 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + + T H+ C I+++ +F I D + +I KS L LD + + Sbjct: 87 IWISTFHSMCVRILRRDIDRIGYNRNFTILDSTDQQSVI----KSILKDKNLDPKKFDPR 142 Query: 191 AFYEILEISNDE 202 A + + +E Sbjct: 143 AILGSISSAKNE 154 >gi|212219550|ref|YP_002306337.1| DNA-dependent helicase II [Coxiella burnetii CbuK_Q154] gi|212013812|gb|ACJ21192.1| DNA helicase II [Coxiella burnetii CbuK_Q154] Length = 723 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 71/199 (35%), Gaps = 45/199 (22%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 S E+ ++ ++ + E + P V A AGSGKT +L R+ L+ N P + Sbjct: 2 SGMENLSLLESLNPPQKE--AVTSPFDHVLVLAGAGSGKTRVLTHRIAWLIQQKNVSPYS 59 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ Sbjct: 60 ILAVTFTNKAAYEMRGRIESMLGMP----------------------------------- 84 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 G + V T H +++ +A + F I D + +LI ++ ++ L+ Sbjct: 85 ---MGAMWVGTFHGLAHRLLRAHWKDAGLPQSFQILDTDDQYRLIRRMQR----NLNLEE 137 Query: 185 NEELKKAFYEILEISNDED 203 ++ K + +E Sbjct: 138 SQWPPKQTQWFINKQKEEG 156 >gi|83814136|ref|YP_445923.1| ATP-dependent DNA helicase [Salinibacter ruber DSM 13855] gi|83755530|gb|ABC43643.1| probable ATP-dependent DNA helicase [Salinibacter ruber DSM 13855] Length = 1114 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 20/185 (10%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 L A +P + +V A AGSGKT LV R++ L+ + L +T T+ AA EMS R E Sbjct: 4 LSAFEPDTNFFVRAAAGSGKTTALVARMVALVRSGVPVEDLTAITFTRKAAGEMSKRFYE 63 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 E+ + Q P + R + L + TIHAFC ++ Sbjct: 64 ---------------ELRRAQTALPAEGP---QRRRVTAALRDAQQAFIGTIHAFCARLL 105 Query: 145 QQFPLEANITSHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN-DE 202 ++ P+ A++ F ++ + ++L + A + L ++ D ++ LE + D Sbjct: 106 RERPIAADLPPGFVAGLEDREERELRDRAWQDYLQTVRADRPARMEALTSLGLEPEDLDA 165 Query: 203 DIETL 207 E L Sbjct: 166 YFERL 170 >gi|115351375|ref|YP_773214.1| UvrD/REP helicase [Burkholderia ambifaria AMMD] gi|115281363|gb|ABI86880.1| ATP-dependent DNA helicase UvrD [Burkholderia ambifaria AMMD] Length = 840 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 56 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 115 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 116 KAAREMMARLSAMMPIDTR--------------------------------------GMW 137 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 138 IGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 193 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 194 QYFINNAKEQGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVD 238 >gi|291615299|ref|YP_003525456.1| UvrD/REP helicase [Sideroxydans lithotrophicus ES-1] gi|291585411|gb|ADE13069.1| UvrD/REP helicase [Sideroxydans lithotrophicus ES-1] Length = 722 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 70/193 (36%), Gaps = 44/193 (22%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L+S EQ A + P RSA + A AGSGKT +L R+ L+ P +L +T T Sbjct: 5 LLSGLNPEQRAAVELPARSALILAGAGSGKTRVLTTRIAWLISTGQVSPHGILAVTFTNK 64 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ G+ + Sbjct: 65 AAKEMVTRLSAMLPI--------------------------------------NTRGMWI 86 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ EAN+ F I D A K + ++ +D+ + + Sbjct: 87 GTFHGLCNRMLRAHHREANLPQTFQILDSGDQLS----AIKRLMKAMNVDDEKYPPREMQ 142 Query: 194 EILEISNDEDIET 206 + S ++ + Sbjct: 143 NFISGSKEQGLRA 155 >gi|229826175|ref|ZP_04452244.1| hypothetical protein GCWU000182_01547 [Abiotrophia defectiva ATCC 49176] gi|229789045|gb|EEP25159.1| hypothetical protein GCWU000182_01547 [Abiotrophia defectiva ATCC 49176] Length = 768 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 70/192 (36%), Gaps = 43/192 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L + ++ + A AGSGKT +L +R+ L+ P +L LT T A Sbjct: 4 LDNLNPEQKKAVVHENGPLLILAGAGSGKTRVLTRRIAYLIKEYGVSPWNILALTFTNKA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV E+I + + V Sbjct: 64 AREMRERVDELIEEGAE--------------------------------------NIWVS 85 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C ++++F + F I D + +K K L ++ +DN E +K Sbjct: 86 TFHSACVKMLRRFIDKIGYDRSFNIYDTDDTKA----VVKQVLKALNIDNKEFPEKTCLN 141 Query: 195 ILEISNDEDIET 206 ++ + ++ I+ Sbjct: 142 VISNAKNDFIDA 153 >gi|153814085|ref|ZP_01966753.1| hypothetical protein RUMTOR_00293 [Ruminococcus torques ATCC 27756] gi|317499894|ref|ZP_07958130.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 8_1_57FAA] gi|331087883|ref|ZP_08336808.1| hypothetical protein HMPREF1025_00391 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848481|gb|EDK25399.1| hypothetical protein RUMTOR_00293 [Ruminococcus torques ATCC 27756] gi|316898611|gb|EFV20646.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 8_1_57FAA] gi|330409578|gb|EGG89019.1| hypothetical protein HMPREF1025_00391 [Lachnospiraceae bacterium 3_1_46FAA] Length = 750 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 K ++ + A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 8 NKPQKEAVFHTEGPLLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNKAAEEM 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ + + V T H+ Sbjct: 68 RQRVDSLVGIGAE--------------------------------------SIWVSTFHS 89 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I++++ + F I D + K L++E + T Sbjct: 90 MCVRILRRYIDRLGYDNRFTIYDTDDQKTLMKEVCRKT 127 >gi|160900763|ref|YP_001566345.1| UvrD/REP helicase [Delftia acidovorans SPH-1] gi|160366347|gb|ABX37960.1| UvrD/REP helicase [Delftia acidovorans SPH-1] Length = 822 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 80/226 (35%), Gaps = 50/226 (22%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L++ EQL A P A + A AGSGKT +L R+ LL A P ++L +T T Sbjct: 21 LLANLNEEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQTGQATPGSILAVTFTNK 80 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ G+ + Sbjct: 81 AAKEMLARLSAMLPY--------------------------------------NVRGMWI 102 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ A ++S F I D + A K +D+ K Sbjct: 103 GTFHGLCNRLLRAHHQAAKLSSTFQILDTQDQLS----AVKRLCKQFNVDDERFPPKQLQ 158 Query: 194 EILEISNDEDIETLISDIISN----RTALKLIFFFFSYLWRRKIIE 235 + +E + D+++N R +++ + R +++ Sbjct: 159 YFIAGCKEEGMRP--GDVVANDPDTRKKVEIYQLYEEQCQRESVVD 202 >gi|330816643|ref|YP_004360348.1| Superfamily I DNA and RNA helicase [Burkholderia gladioli BSR3] gi|327369036|gb|AEA60392.1| Superfamily I DNA and RNA helicase [Burkholderia gladioli BSR3] Length = 789 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGFASPPTVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMLSRLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKASNIDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPDKVDATDNFNRMFVELYQAYDQQCQREGVVD 185 >gi|227487771|ref|ZP_03918087.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC 51867] gi|227542414|ref|ZP_03972463.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC 51866] gi|227092273|gb|EEI27585.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC 51867] gi|227181612|gb|EEI62584.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC 51866] Length = 735 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 85/222 (38%), Gaps = 51/222 (22%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL+S +Q A + A AGSGKT +L +R+ LL P +L +T T Sbjct: 5 DLVSDLNPQQRDAVLHDDSPLLIVAGAGSGKTAVLTRRIAHLLRFKGVQPWQILAITFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV+ +I + + Sbjct: 65 KAAKEMQERVIGLIGPEAQ--------------------------------------NMA 86 Query: 133 VQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H+ C I+++ + S+F I D + SK+L+++ K + ++KK Sbjct: 87 VATFHSTCVRILRRNAQLVPGLNSNFTIYDSDDSKRLLQQIAKDM--------DLDIKKF 138 Query: 192 FYEIL--EISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231 +L +IS ++ + D + + ++ F+ RR Sbjct: 139 SPRVLGNKISGWKNELIGVDDAVKEHKVIGQVYGFYQERLRR 180 >gi|186476348|ref|YP_001857818.1| UvrD/REP helicase [Burkholderia phymatum STM815] gi|184192807|gb|ACC70772.1| UvrD/REP helicase [Burkholderia phymatum STM815] Length = 790 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L++ EQ A P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 3 ELLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGFASPPTILGVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMSRLSALLPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHYRDAGLPQTFQILDTSDQLS----AIKRLMKGLNIDDEKYPPKNL 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPKDVDASDNFNRKFIELYEAYDQQCQREGVVD 185 >gi|212213503|ref|YP_002304439.1| DNA-dependent helicase II [Coxiella burnetii CbuG_Q212] gi|215919328|ref|NP_821025.2| DNA-dependent helicase II [Coxiella burnetii RSA 493] gi|206584213|gb|AAO91539.2| DNA helicase II [Coxiella burnetii RSA 493] gi|212011913|gb|ACJ19294.1| DNA helicase II [Coxiella burnetii CbuG_Q212] Length = 723 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 71/199 (35%), Gaps = 45/199 (22%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 S E+ ++ ++ + E + P V A AGSGKT +L R+ L+ N P + Sbjct: 2 SGMENLSLLESLNPPQKE--AVTSPFDHVLVLAGAGSGKTRVLTHRIAWLIQQKNVSPYS 59 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ Sbjct: 60 ILAVTFTNKAAYEMRGRIESMLGMP----------------------------------- 84 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 G + V T H +++ +A + F I D + +LI ++ ++ L+ Sbjct: 85 ---MGAMWVGTFHGLAHRLLRAHWKDAGLPQSFQILDTDDQYRLIRRMQR----NLNLEE 137 Query: 185 NEELKKAFYEILEISNDED 203 ++ K + +E Sbjct: 138 SQWPPKQTQWFINKQKEEG 156 >gi|167563007|ref|ZP_02355923.1| DNA helicase II [Burkholderia oklahomensis EO147] Length = 786 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHHRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPDKVDATDSFNRKFVELYQAYDQQCQREGVVD 185 >gi|207743840|ref|YP_002260232.1| dna helicase II protein (partial sequence n terminus) [Ralstonia solanacearum IPO1609] gi|206595240|emb|CAQ62167.1| probable dna helicase II protein (partial sequence n terminus) [Ralstonia solanacearum IPO1609] Length = 166 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 72/194 (37%), Gaps = 44/194 (22%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P SA + A AGSGKT +L R+ L+ ++ PS +L +T T Sbjct: 3 DLLAHLNPEQRAAVTLPDESALILAGAGSGKTRVLTTRIAWLVQSSRVSPSGVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM+ R+ ++ + Sbjct: 63 KAAKEMTARLSAMLPI--------------------------------------NTRAMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D + A K L S+ +D+ + K Sbjct: 85 IGTFHGLCNRLLRAHYRDAGLPQTFQILDTQDQLS----AVKRLLKSLNIDDEKFPPKNV 140 Query: 193 YEILEISNDEDIET 206 + + ++ + Sbjct: 141 QYFINGAKEQGLRA 154 >gi|239832290|ref|ZP_04680619.1| DNA helicase II [Ochrobactrum intermedium LMG 3301] gi|239824557|gb|EEQ96125.1| DNA helicase II [Ochrobactrum intermedium LMG 3301] Length = 859 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 43/192 (22%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D + EQ A V A AG+GKT +L R+ +L A+PS +L +T T Sbjct: 43 DYLKGLNPEQRQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILTTGLAYPSQILAVTFTN 102 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ G Sbjct: 103 KAAREMKERIGHLVGGAVE-------------------------------------GMPW 125 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ ++++ AN+TS F I D + +LI++ + + LD+ + F Sbjct: 126 LGTFHSIGVKLLRRHAELANLTSDFTILDTDDVIRLIKQ----LIQAEGLDDKRWPARTF 181 Query: 193 YEILEISNDEDI 204 +++ ++ Sbjct: 182 ANMIDGWKNKGF 193 >gi|167570197|ref|ZP_02363071.1| DNA helicase II [Burkholderia oklahomensis C6786] Length = 786 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHHRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPDKVDATDSFNRKFVELYQAYDQQCQREGVVD 185 >gi|172060415|ref|YP_001808067.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6] gi|171992932|gb|ACB63851.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6] Length = 787 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPPTVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVD 185 >gi|323143043|ref|ZP_08077748.1| UvrD/REP helicase [Succinatimonas hippei YIT 12066] gi|322417184|gb|EFY07813.1| UvrD/REP helicase [Succinatimonas hippei YIT 12066] Length = 688 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 65/166 (39%), Gaps = 41/166 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 ID ++ K ++ S P + V A AG+GKT +LV R+ LL + P +L +T T Sbjct: 5 IIDPLN--KEQKEAVSAPLSNILVIAGAGTGKTRVLVSRIAWLLQVEMLLPREVLAVTFT 62 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ I+ + GL Sbjct: 63 NKAAREMRERIELIMG--------------------------------------HSVDGL 84 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 T H+F I++ + +A + F + D + KKLI+ K L Sbjct: 85 WANTFHSFSLRILRNYAKQAGLLPDFTVLDTDNQKKLIKRILKEEL 130 >gi|229825742|ref|ZP_04451811.1| hypothetical protein GCWU000182_01105 [Abiotrophia defectiva ATCC 49176] gi|229790305|gb|EEP26419.1| hypothetical protein GCWU000182_01105 [Abiotrophia defectiva ATCC 49176] Length = 1183 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 88/223 (39%), Gaps = 27/223 (12%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T+ + + + VSA AGSGKT +L++RV+ LL P LL +T T+ AA Sbjct: 5 WTEEQLAVIKHRDDNMLVSAAAGSGKTAVLIERVMGRLLDERAPINIDELLVVTFTRDAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ I+ + L E+ K + + K LL + T Sbjct: 65 GEMKERIGAAIS-------KKLEEEVAKDANSDIS-LRLMKQYSLL-------SEAHMST 109 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I +FC+ ++ + EA I D+ + + ++ + L + + + Sbjct: 110 IDSFCKKVVMENFKEAEIDPSVRTLDDTEGVIIRKKVLEELLETEYEIRHADFINFVEYF 169 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 +D+ +E LI L+L F S + ++ + Sbjct: 170 ARGKSDKILEDLI---------LQLYRFSESLPDKESWFDREI 203 >gi|256827426|ref|YP_003151385.1| DNA/RNA helicase, superfamily I [Cryptobacterium curtum DSM 15641] gi|256583569|gb|ACU94703.1| DNA/RNA helicase, superfamily I [Cryptobacterium curtum DSM 15641] Length = 841 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 58/165 (35%), Gaps = 39/165 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL + + V A AGSGKT +L R+ ++ P +L +T T Sbjct: 2 ALDLETLNPEQHEAVMTTEGPLLVLAGAGSGKTRVLTYRIAHMIEDLGVAPWEILAITFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM R+ ++ + G+ Sbjct: 62 NKAAAEMRERLGALVGPAAR--------------------------------------GM 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I++ T +F I ++ SK+LI++ Sbjct: 84 WVSTFHSMCVRILRANAEVIGFTKNFTIYADDDSKRLIKDIMAQL 128 >gi|197105764|ref|YP_002131141.1| DNA helicase II [Phenylobacterium zucineum HLK1] gi|196479184|gb|ACG78712.1| DNA helicase II [Phenylobacterium zucineum HLK1] Length = 774 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 74/197 (37%), Gaps = 44/197 (22%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 ++ + ++ + E +LA++ V A AG+GKT +L R+ +L A P LL + Sbjct: 23 AADYLQGLNPEQREAVLATE--GPVLVLAGAGTGKTRVLTTRLAHILATGKARPWELLAV 80 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R+ +I + Sbjct: 81 TFTNKAAREMRERISHMIGPAAEGLR---------------------------------- 106 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ I+++ + S++ I D++ ++LI++ L + +D Sbjct: 107 ---WLGTFHSVAAQILRRHAELVGLKSNYTILDDDDQERLIKQ----ILEAENIDAKRWT 159 Query: 189 KKAFYEILEISNDEDIE 205 KA +++ + Sbjct: 160 PKALAGLIDHWKNRGWR 176 >gi|325522724|gb|EGD01222.1| UvrD/REP helicase [Burkholderia sp. TJI49] Length = 272 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 82/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLS----AIKRLMKGLNVDDEKFPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPDKVDASDNFNRKFVELYQAYDQQCQREGVVD 185 >gi|328884521|emb|CCA57760.1| ATP-dependent DNA helicase UvrD or PcrA [Streptomyces venezuelae ATCC 10712] Length = 816 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 77/204 (37%), Gaps = 45/204 (22%) Query: 4 HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHP 62 H + + ++ +++ ++ + A AGSGKT +L R+ LL + HP Sbjct: 63 HRPAVDPAALLEGLNE--QQRAAVVHTDTPLLIVAGAGSGKTRVLTHRIAHLLGTRHVHP 120 Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122 +L +T T AA EM RV +++ + Sbjct: 121 GQILAITFTNKAAGEMKERVEQLVGPRA-------------------------------- 148 Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 + V T H+ C I+++ + TS F+I D SK+L+ + + L Sbjct: 149 ------NAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMSLVCRD----LDL 198 Query: 183 DNNEELKKAFYEILEISNDEDIET 206 D + K+F + +E I+ Sbjct: 199 DPKKFPPKSFSAKISNLKNELIDE 222 >gi|218438504|ref|YP_002376833.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7424] gi|218171232|gb|ACK69965.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7424] Length = 772 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 50/200 (25%), Positives = 80/200 (40%), Gaps = 21/200 (10%) Query: 10 HSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67 S +D +SQ Q A V A AGSGKT L R+ L+ P +L Sbjct: 1 MSVNLDYLSQLNPSQRRAVQHYCGPLLVVAGAGSGKTRALTYRIAHLIRYHQVDPENILA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ I E L+ E + ++ D + LL + T Sbjct: 61 VTFTNKAAREMKERIERIFA-------EDLAQEKHGQKFVLLSEYD---QKQLLSKVYRT 110 Query: 128 -PGGLKVQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAKKSTLASI 180 L + T H+ C I++ ++ E T +F+I DE ++ +++ L Sbjct: 111 VTKKLWIGTFHSLCARILRYDINKYQDERGRTWNRNFSILDESDAQSIVKNIVTKQLN-- 168 Query: 181 MLDNNEELKKAFYEILEISN 200 + + E + Y+I N Sbjct: 169 LNEKKFEPRSIRYQISNAKN 188 >gi|158317729|ref|YP_001510237.1| ATP-dependent DNA helicase PcrA [Frankia sp. EAN1pec] gi|158113134|gb|ABW15331.1| ATP-dependent DNA helicase PcrA [Frankia sp. EAN1pec] Length = 851 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 60/166 (36%), Gaps = 41/166 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E ++ ++ ++ V A AGSGKT +L R+ LL A A P +L +T Sbjct: 66 ELLEGLN--PQQRAAVVHAGSPLLVVAGAGSGKTRVLTHRIAYLLAARGARPGEILAITF 123 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV I+ +AR Sbjct: 124 TNKAAGEMKERVEAIVGG---------------------------RAR-----------A 145 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I++ S F+I D +++LI + Sbjct: 146 MWVSTFHSACVRILRSEASRLGFGSSFSIYDAADAQRLITLVTRDL 191 >gi|302383276|ref|YP_003819099.1| UvrD/REP helicase [Brevundimonas subvibrioides ATCC 15264] gi|302193904|gb|ADL01476.1| UvrD/REP helicase [Brevundimonas subvibrioides ATCC 15264] Length = 799 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 71/195 (36%), Gaps = 43/195 (22%) Query: 12 ETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 ET D + EQ A + V A AG+GKT +L R+ +L A P LL +T Sbjct: 44 ETPDYLGGLNPEQREAVEATEGPVLVLAGAGTGKTRVLTTRLAHILATGRARPWELLVVT 103 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ +I P+ + Sbjct: 104 FTNKAAREMRERITHLIG---------------------PSAEGLR-------------- 128 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + T H+ I+++ P + S F I D + ++L+++ L + +D Sbjct: 129 --WLGTFHSVAAQILRRHPELVGLKSSFTILDTDDQERLLKQ----LLEAANIDTKRWTP 182 Query: 190 KAFYEILEISNDEDI 204 K+ +++ + Sbjct: 183 KSLSGLIDHWKNRGW 197 >gi|295401728|ref|ZP_06811694.1| ATP-dependent DNA helicase PcrA [Geobacillus thermoglucosidasius C56-YS93] gi|312112464|ref|YP_003990780.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y4.1MC1] gi|294976215|gb|EFG51827.1| ATP-dependent DNA helicase PcrA [Geobacillus thermoglucosidasius C56-YS93] gi|311217565|gb|ADP76169.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y4.1MC1] Length = 730 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L + + +Q + A AGSGKT +L R+ LL P +L +T T A Sbjct: 9 LANLNEQQQAAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLAEKQVAPWNILAITFTNKA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ + + + Sbjct: 69 AREMKERVQALLGGAAE--------------------------------------EIWIS 90 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F+I D +++ K Sbjct: 91 TFHSMCVRILRRDIDRIGIDRNFSILDTTDQLSVLKNILKE 131 >gi|156503119|ref|YP_001429184.1| DNA helicase II [Francisella tularensis subsp. holarctica FTNF002-00] gi|290953989|ref|ZP_06558610.1| DNA helicase II [Francisella tularensis subsp. holarctica URFT1] gi|295312608|ref|ZP_06803360.1| DNA helicase II [Francisella tularensis subsp. holarctica URFT1] gi|156253722|gb|ABU62228.1| DNA helicase II [Francisella tularensis subsp. holarctica FTNF002-00] Length = 740 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 43/190 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q R+A + A AGSGKT +L R+ L +L +T T AA Sbjct: 8 LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ RV +++ + G+ + T Sbjct: 68 KEIQQRVEKMLGISTF--------------------------------------GMWIGT 89 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H ++++ E + +F I D+++ +L K + ++ LD+ + K Sbjct: 90 FHGIAHRLLRKHAHELGLDKNFRILDQDEQAQL----VKKVINNLDLDDKKYPPKLLQNF 145 Query: 196 LEISNDEDIE 205 + D+ I Sbjct: 146 INKQKDKAIR 155 >gi|56707295|ref|YP_169191.1| DNA helicase II [Francisella tularensis subsp. tularensis SCHU S4] gi|110669765|ref|YP_666322.1| DNA helicase II [Francisella tularensis subsp. tularensis FSC198] gi|224456360|ref|ZP_03664833.1| DNA helicase II [Francisella tularensis subsp. tularensis MA00-2987] gi|254369977|ref|ZP_04985985.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254874133|ref|ZP_05246843.1| DNA helicase II [Francisella tularensis subsp. tularensis MA00-2987] gi|56603787|emb|CAG44754.1| DNA helicase II [Francisella tularensis subsp. tularensis SCHU S4] gi|110320098|emb|CAL08137.1| DNA helicase II [Francisella tularensis subsp. tularensis FSC198] gi|151568223|gb|EDN33877.1| hypothetical protein FTBG_01576 [Francisella tularensis subsp. tularensis FSC033] gi|254840132|gb|EET18568.1| DNA helicase II [Francisella tularensis subsp. tularensis MA00-2987] gi|282158414|gb|ADA77805.1| DNA helicase II [Francisella tularensis subsp. tularensis NE061598] Length = 740 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 43/190 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q R+A + A AGSGKT +L R+ L +L +T T AA Sbjct: 8 LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ RV +++ + G+ + T Sbjct: 68 KEIQQRVEKMLGISTF--------------------------------------GMWIGT 89 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H ++++ E + +F I D+++ +L K + ++ LD+ + K Sbjct: 90 FHGIAHRLLRKHAHELGLDKNFRILDQDEQAQL----VKKVINNLDLDDKKYPPKLLQNF 145 Query: 196 LEISNDEDIE 205 + D+ I Sbjct: 146 INKQKDKAIR 155 >gi|332184707|gb|AEE26961.1| ATP-dependent DNA helicase UvrD/PcrA [Francisella cf. novicida 3523] Length = 740 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 68/190 (35%), Gaps = 43/190 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q R+A + A AGSGKT +L R+ L +L +T T AA Sbjct: 8 LGLNPEQQKATLLEGRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ RV +++ + G+ + T Sbjct: 68 KEIQQRVEKMLGISTF--------------------------------------GMWIGT 89 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H ++++ E + +F I D+++ +LI K + ++ LD+ + K Sbjct: 90 FHGVAHRLLRKHAHELGLDKNFRILDQDEQAQLI----KKVINNLDLDDKKYPPKLLQNF 145 Query: 196 LEISNDEDIE 205 + D+ I Sbjct: 146 INKQKDKAIR 155 >gi|317488584|ref|ZP_07947129.1| ATP-dependent DNA helicase PcrA [Eggerthella sp. 1_3_56FAA] gi|325832008|ref|ZP_08165105.1| putative ATP-dependent DNA helicase PcrA [Eggerthella sp. HGA1] gi|316912326|gb|EFV33890.1| ATP-dependent DNA helicase PcrA [Eggerthella sp. 1_3_56FAA] gi|325486329|gb|EGC88781.1| putative ATP-dependent DNA helicase PcrA [Eggerthella sp. HGA1] Length = 813 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 41/164 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 ID ++ + E ++ D V A AGSGKT +L R+ L+ + P +L +T T Sbjct: 5 IDSLNGPQREAVVTVD--GPLLVLAGAGSGKTRVLTYRIANLIENHDVAPWEILAITFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ ++ G+ Sbjct: 63 KAAAEMRERLNGLVGPRCR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C +++ + T +F I D + K+L +E Sbjct: 85 VSTFHSMCVRMLRSDAEKLGFTRNFTIYDTDDQKRLYKEIMAEL 128 >gi|89256929|ref|YP_514291.1| DNA helicase II [Francisella tularensis subsp. holarctica LVS] gi|115315293|ref|YP_764016.1| DNA helicase II [Francisella tularensis subsp. holarctica OSU18] gi|167009993|ref|ZP_02274924.1| DNA helicase II [Francisella tularensis subsp. holarctica FSC200] gi|254368194|ref|ZP_04984214.1| DNA helicase II [Francisella tularensis subsp. holarctica 257] gi|89144760|emb|CAJ80095.1| DNA helicase II [Francisella tularensis subsp. holarctica LVS] gi|115130192|gb|ABI83379.1| DNA helicase II [Francisella tularensis subsp. holarctica OSU18] gi|134254004|gb|EBA53098.1| DNA helicase II [Francisella tularensis subsp. holarctica 257] Length = 740 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 43/190 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q R+A + A AGSGKT +L R+ L +L +T T AA Sbjct: 8 LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ RV +++ + G+ + T Sbjct: 68 KEIQQRVEKMLGISTF--------------------------------------GMWIGT 89 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H ++++ E + +F I D+++ +L K + ++ LD+ + K Sbjct: 90 FHGIAHRLLRKHAHELGLDKNFRILDQDEQAQL----VKKVINNLDLDDKKYPPKLLQNF 145 Query: 196 LEISNDEDIE 205 + D+ I Sbjct: 146 INKQKDKAIR 155 >gi|227537987|ref|ZP_03968036.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum ATCC 33300] gi|227242063|gb|EEI92078.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum ATCC 33300] Length = 758 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 62/173 (35%), Gaps = 43/173 (24%) Query: 14 IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D ++ Q A + + A AGSGKT ++ RV L+ P +L LT T Sbjct: 1 MDYLAGLNPTQRAAVEQTEGPVMIVAGAGSGKTRVITYRVAHLIRKGVDPFNILVLTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+++++ + + Sbjct: 61 KAAKEMRERIMKVVGGEAK--------------------------------------NIW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 + T H+ I++ +F I D + +K L+ +S L + LD+ Sbjct: 83 MGTFHSVFARILRVEAELIGYPRNFTIYDTDDTKSLL----RSILKEMNLDDK 131 >gi|197302046|ref|ZP_03167107.1| hypothetical protein RUMLAC_00774 [Ruminococcus lactaris ATCC 29176] gi|197298855|gb|EDY33394.1| hypothetical protein RUMLAC_00774 [Ruminococcus lactaris ATCC 29176] Length = 767 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 41/163 (25%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 D +++ + E + +D + A AGSGKT +L R+ L+ N +P +L +T T Sbjct: 5 DKLNEPQREAVYHTD--GPLLILAGAGSGKTRVLTHRIAYLIEERNVNPWNILAITFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++ S + V Sbjct: 63 AAGEMRERVDSLVGFGSE--------------------------------------SIWV 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ C I+++F + F I D + K L++E K Sbjct: 85 STFHSMCVRILRRFIDRLGYDNRFTIYDTDDQKTLMKEVCKKV 127 >gi|254198264|ref|ZP_04904686.1| DNA helicase II [Burkholderia pseudomallei S13] gi|169655005|gb|EDS87698.1| DNA helicase II [Burkholderia pseudomallei S13] Length = 787 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAVPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185 >gi|322385777|ref|ZP_08059421.1| exonuclease RexA [Streptococcus cristatus ATCC 51100] gi|321270515|gb|EFX53431.1| exonuclease RexA [Streptococcus cristatus ATCC 51100] Length = 1223 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 85/221 (38%), Gaps = 27/221 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT+++VQR++ +L S L T T AA E+ Sbjct: 29 TPEQIQAIYSSGQNILVSASAGSGKTYVMVQRIIDQILRGVEVSQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + S + E E+ R L L + T+ AF Sbjct: 89 ERLEK---EMSLVIKETQDQEL----------------RQHLAQQLAEIANADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 + ++ ++ + HF I + +++ L +++++ + F +++ Sbjct: 130 TQKVVNKYGYLLGLAPHFRILQSASEQLILQNEVFDQLFDTYYESDQQ--ELFSRLVKNF 187 Query: 200 NDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 + DI R + + F S RK +E + Sbjct: 188 TGKR-----KDISGFRQQIYSIYSFLQSTSNPRKWLEDTFL 223 >gi|288958808|ref|YP_003449149.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Azospirillum sp. B510] gi|288911116|dbj|BAI72605.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Azospirillum sp. B510] Length = 773 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 45/193 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71 +D ++ T+ + A D V A AG+GKT +L R+ LL+ A +L +T T Sbjct: 28 YLDGLNPTQRAAVEALD--GPVLVLAGAGTGKTRVLTTRLAHLLMTRRAAAFQILAVTFT 85 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ P G Sbjct: 86 NKAAREMRERVAHLVGIE--------------------------------------PEGW 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T HA I+++ + S+F I D + +LI++ L + +D+ + + Sbjct: 108 WLGTFHALAARILRRHAELVGLKSNFTILDTDDQVRLIKQ----LLEAENIDSKKWPARQ 163 Query: 192 FYEILEISNDEDI 204 +E D + Sbjct: 164 ILGAIERWKDRGL 176 >gi|300772620|ref|ZP_07082490.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum ATCC 33861] gi|300760923|gb|EFK57749.1| ATP-dependent DNA helicase PcrA [Sphingobacterium spiritivorum ATCC 33861] Length = 758 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 62/173 (35%), Gaps = 43/173 (24%) Query: 14 IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D ++ Q A + + A AGSGKT ++ RV L+ P +L LT T Sbjct: 1 MDYLAGLNPTQRAAVEQTEGPVMIVAGAGSGKTRVITYRVAHLIRKGVDPFNILVLTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+++++ + + Sbjct: 61 KAAKEMRERIMKVVGGEAK--------------------------------------NIW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 + T H+ I++ +F I D + +K L+ +S L + LD+ Sbjct: 83 MGTFHSVFARILRVEAELIGYPRNFTIYDTDDTKSLL----RSILKEMNLDDK 131 >gi|222823417|ref|YP_002574991.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter lari RM2100] gi|222538639|gb|ACM63740.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter lari RM2100] Length = 915 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 84/207 (40%), Gaps = 12/207 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + L+L A + +L LT T A EM R+ + + L Sbjct: 9 LALEASAGSGKTFALSVRFVALVLMGAKINEILALTFTNKTANEMKERIFKTFLEFDMLE 68 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + AE ++ + A L + T +F I++ F L ++ Sbjct: 69 NGQNKAECNELMKMLDKSKEELIALKEKYKDEFLRSKLNIYTFDSFFSQIIRSFALNLDL 128 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 S F I +E + K+ +A + + EEL+ Y I++ + D + ++ Sbjct: 129 MSDFIITEESDN-------YKNFIAKL---SEEELQALAYYIMQTKSKSDFFKNLENLYV 178 Query: 214 NRTALKLIF--FFFSYLWRRKIIEKSL 238 +K + + +K I++ + Sbjct: 179 RSCDIKPNSNAHLPNKVNLKKSIDEFI 205 >gi|328955121|ref|YP_004372454.1| UvrD/REP helicase [Coriobacterium glomerans PW2] gi|328455445|gb|AEB06639.1| UvrD/REP helicase [Coriobacterium glomerans PW2] Length = 847 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 59/162 (36%), Gaps = 39/162 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ID+ S +++ V A AGSGKT +L R+ ++ P +L +T T Sbjct: 5 AIDIASLNTAQREAVLSTEGPLLVLAGAGSGKTRVLTYRIAHMVADLGVRPWQILAITFT 64 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM R+ ++ G+ Sbjct: 65 NKAAAEMRERIQALMDGGMR--------------------------------------GM 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 V T HA C I+++ T F I D++ S++L+ + Sbjct: 87 WVCTFHAMCVRILREDADLIGYTGQFTIYDDDDSRRLVRDIM 128 >gi|254369794|ref|ZP_04985804.1| DNA helicase II [Francisella tularensis subsp. holarctica FSC022] gi|157122753|gb|EDO66882.1| DNA helicase II [Francisella tularensis subsp. holarctica FSC022] Length = 740 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 43/190 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q R+A + A AGSGKT +L R+ L +L +T T AA Sbjct: 8 LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ RV +++ + G+ + T Sbjct: 68 KEIQQRVEKMLGISTF--------------------------------------GMWIGT 89 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H ++++ E + +F I D+++ +L K + ++ LD+ + K Sbjct: 90 FHGIAHRLLRKHAHELGLDKNFRILDQDEQAQL----VKKVINNLDLDDKKYPPKLLQNF 145 Query: 196 LEISNDEDIE 205 + D+ I Sbjct: 146 INKQKDKAIR 155 >gi|325846585|ref|ZP_08169500.1| putative ATP-dependent DNA helicase PcrA [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481343|gb|EGC84384.1| putative ATP-dependent DNA helicase PcrA [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 729 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 57/164 (34%), Gaps = 39/164 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +DL + ++ V A AGSGKT +L + L+ +P+ +L +T T Sbjct: 1 MDLSNLNDKQKEAVLHEKGPLLVVAGAGSGKTRVLTTSISYLIKEKFVNPTNILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ E L Sbjct: 61 KAANEMKERISNLLN--------------------------------------EDVSHLW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I++ + ++F I D K L++E K Sbjct: 83 IGTFHSICARILRMNINKIGYDNNFTIYDTNDQKTLVKEIIKDL 126 >gi|311744700|ref|ZP_07718497.1| ATP-dependent DNA helicase PcrA [Aeromicrobium marinum DSM 15272] gi|311312009|gb|EFQ81929.1| ATP-dependent DNA helicase PcrA [Aeromicrobium marinum DSM 15272] Length = 774 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 44/167 (26%), Positives = 67/167 (40%), Gaps = 40/167 (23%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 SET+ L +++ S P V A AGSGKT +L +R+ L+ A AHP ++L +T Sbjct: 24 SETL-LEDLNDAQREAVSHPGGPLLVVAGAGSGKTRVLTRRIAWLMAARGAHPGSILAIT 82 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM RV E++ S Sbjct: 83 FTNKAAAEMRERVAEMVGGASR-------------------------------------- 104 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ TS F + D S++L+ + Sbjct: 105 AMWVSTFHSACVRILRREAATLGYTSSFTVYDAADSRRLMTLVCRDM 151 >gi|167824492|ref|ZP_02455963.1| DNA helicase II [Burkholderia pseudomallei 9] Length = 525 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185 >gi|194337239|ref|YP_002019033.1| UvrD/REP helicase [Pelodictyon phaeoclathratiforme BU-1] gi|194309716|gb|ACF44416.1| UvrD/REP helicase [Pelodictyon phaeoclathratiforme BU-1] Length = 739 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 57/164 (34%), Gaps = 39/164 (23%) Query: 15 DLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 D ++ ++ T V A AGSGKT ++ R+ L+ P +L LT T Sbjct: 3 DFLNDLNEVQRNAVIATTGPVMVLAGAGSGKTRVITYRIAYLIRNEGVSPQNILALTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM HRV ++ S GL Sbjct: 63 KAAGEMRHRVDTLLHQGSSR-------------------------------------GLW 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ +F+I D E SK LI ++ Sbjct: 86 IGTFHSIFARILRNSIDLIGYDKNFSIFDSEDSKSLIRQSMAEL 129 >gi|227504218|ref|ZP_03934267.1| ATP-dependent DNA helicase [Corynebacterium striatum ATCC 6940] gi|227199173|gb|EEI79221.1| ATP-dependent DNA helicase [Corynebacterium striatum ATCC 6940] Length = 869 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 78/209 (37%), Gaps = 53/209 (25%) Query: 4 HNSFQEHSETIDLISQ-TKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NA 60 H + + D +++ +Q+ A S + A AGSGKT +L +R+ L+ Sbjct: 61 HAAADQRPAGPDPLTEGLNPQQIEAVTHAGSPLLIVAGAGSGKTAVLTRRIAYLMRNRGV 120 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 P +L +T T AAAEM RV +++ + Sbjct: 121 APWEILAITFTNKAAAEMKERVGQLVGPVAE----------------------------- 151 Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKS---- 175 + V T H+ C I++Q + ++F I D + +++L+ K Sbjct: 152 ---------RMWVSTFHSICVRILRQNAQLVPGLNTNFTIYDGDDARRLLTMIAKDMQLD 202 Query: 176 -------TLASIMLDNNEELKKAFYEILE 197 LA+ + ++ EL Y + E Sbjct: 203 LKKYTARVLANQISNHKNELVSPDYALAE 231 >gi|198275887|ref|ZP_03208418.1| hypothetical protein BACPLE_02062 [Bacteroides plebeius DSM 17135] gi|198271516|gb|EDY95786.1| hypothetical protein BACPLE_02062 [Bacteroides plebeius DSM 17135] Length = 784 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 58/163 (35%), Gaps = 38/163 (23%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 D +++ Q A + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 3 DYLNELNESQREAVLYNEGPSLVIAGAGSGKTRVLTYKIAYLLDNGYEPWSILALTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + +AR+L + Sbjct: 63 AAREMKERIARQVGQ--------------------------ERARYL-----------WM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ T +F I D SK L++ K Sbjct: 86 GTFHSIFSRILRAEAEALGFTPNFTIYDATDSKSLVKTIIKEM 128 >gi|297622299|ref|YP_003703733.1| UvrD/REP helicase [Truepera radiovictrix DSM 17093] gi|297163479|gb|ADI13190.1| UvrD/REP helicase [Truepera radiovictrix DSM 17093] Length = 1106 Score = 132 bits (333), Expect = 4e-29, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 42/181 (23%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ EQ A++ A V A AGSGKT +V R+ L+ +P+ +L +T T Sbjct: 10 LLAVLNEEQRAAAEHFQGPALVLAGAGSGKTRTVVHRIAYLMDAHEVYPTEILAVTFTNK 69 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA E+ RV ++ + L V Sbjct: 70 AAGELKERVAHLMGEAAK--------------------------------------DLWV 91 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ C I++ + + FAI D+ ++++E + + + D N + +A Sbjct: 92 STFHSACLRILRAYGGLIGLEPGFAIYDDTDQLEVLKEILERV--TGLGDANPRVLRALI 149 Query: 194 E 194 + Sbjct: 150 D 150 >gi|78221316|ref|YP_383063.1| ATP-dependent DNA helicase PcrA [Geobacter metallireducens GS-15] gi|78192571|gb|ABB30338.1| ATP-dependent DNA helicase PcrA [Geobacter metallireducens GS-15] Length = 742 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 44/193 (22%), Positives = 73/193 (37%), Gaps = 45/193 (23%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL+ Q A V A AGSGKT ++V R+ L+ P +L +T T Sbjct: 1 MDLLKNLNPPQKEAVLHGEGPLLVLAGAGSGKTRVIVHRIAHLICNLGVPPWQILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ A G+ P Sbjct: 61 NKAAGEMRERVERLVGA-----------------GEAPL--------------------- 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C +++ S FAI D++ ++KL++E +A + LD ++ Sbjct: 83 -IATFHSTCARFLRRDIHHLGYDSSFAIYDDKDAEKLLKE----VIAGLGLDEKRFPARS 137 Query: 192 FYEILEISNDEDI 204 F ++ + I Sbjct: 138 FAAAIDDCKNRGI 150 >gi|330998558|ref|ZP_08322378.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841] gi|329568156|gb|EGG49975.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841] Length = 819 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 56/154 (36%), Gaps = 37/154 (24%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 ++ + V A AGSGKT +L ++ LL P +L LT T AA EM R+ Sbjct: 17 QRRAVCYDKGPSLVIAGAGSGKTRVLTYKIAYLLEQGYKPWNILALTFTNKAAREMKERI 76 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 ++ E GL + T H+ Sbjct: 77 ARLVGH-------------------------------------ELAAGLWMGTFHSVFSR 99 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 I+++ E +SHF I D+ S+ LI+ + Sbjct: 100 ILRKEADEIGFSSHFTIYDQADSRNLIKTVIREM 133 >gi|322804716|emb|CBZ02268.1| ATP-dependent nuclease, subunit A [Clostridium botulinum H04402 065] Length = 319 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 84/224 (37%), Gaps = 35/224 (15%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 + T ++ + V+A AG+GKT +LVQR++ +L P LL +T Sbjct: 1 MSGTKWTDEQRQAIFTKDCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAAEM R+ + I+ K + P + K LL Sbjct: 61 TNAAAAEMRERIGDAIS---------------KGLDEDPESKVLRKQLTLL-------NK 98 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + TIH+FC +++ I +F I DE + + +EA + NE+ Sbjct: 99 SNIMTIHSFCLQVIKNNFHTMEIDPNFRICDETEGILMKQEAIDELFDELYEIENED--- 155 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 F ++E L L+L F S + + Sbjct: 156 -FINLVESYASRKDTRL------QEVVLELHRFAKSAPFPYTWL 192 >gi|294630996|ref|ZP_06709556.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. e14] gi|292834329|gb|EFF92678.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. e14] Length = 841 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 61/169 (36%), Gaps = 41/169 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 + + ++ ++ +++ + A AGSGKT +L R+ LL HP +L Sbjct: 80 DSAALLEGLN--NNQRAAVVHAGSPLLIVAGAGSGKTRVLTHRIAYLLAERGVHPGQILA 137 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV ++ + Sbjct: 138 ITFTNKAAGEMKERVEHLVGPRA------------------------------------- 160 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ TS F+I D SK+L+ + Sbjct: 161 -NAMWVMTFHSACVRILRRESKRLGFTSSFSIYDAADSKRLMALVCRDL 208 >gi|208780175|ref|ZP_03247517.1| DNA helicase II [Francisella novicida FTG] gi|208743824|gb|EDZ90126.1| DNA helicase II [Francisella novicida FTG] Length = 740 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 43/190 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q R+A + A AGSGKT +L R+ L +L +T T AA Sbjct: 8 LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTNKAA 67 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ RV +++ + G+ + T Sbjct: 68 KEIQQRVEKMLGISTF--------------------------------------GMWIGT 89 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H ++++ E + +F I D+++ +L K + ++ LD+ + K Sbjct: 90 FHGIAHRLLRKHAHELGLDKNFRILDQDEQAQL----VKKVINNLDLDDKKYPPKLLQNF 145 Query: 196 LEISNDEDIE 205 + D+ I Sbjct: 146 INKQKDKAIR 155 >gi|118498158|ref|YP_899208.1| DNA helicase II [Francisella tularensis subsp. novicida U112] gi|194324331|ref|ZP_03058104.1| DNA helicase II [Francisella tularensis subsp. novicida FTE] gi|118424064|gb|ABK90454.1| DNA helicase II [Francisella novicida U112] gi|194321396|gb|EDX18881.1| DNA helicase II [Francisella tularensis subsp. novicida FTE] Length = 740 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 43/190 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q R+A + A AGSGKT +L R+ L +L +T T AA Sbjct: 8 LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTNKAA 67 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ RV +++ + G+ + T Sbjct: 68 KEIQQRVEKMLGISTF--------------------------------------GMWIGT 89 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H ++++ E + +F I D+++ +L K + ++ LD+ + K Sbjct: 90 FHGIAHRLLRKHAHELGLDKNFRILDQDEQAQL----VKKVINNLDLDDKKYPPKLLQNF 145 Query: 196 LEISNDEDIE 205 + D+ I Sbjct: 146 INKQKDKAIR 155 >gi|161829860|ref|YP_001595927.1| DNA-dependent helicase II [Coxiella burnetii RSA 331] gi|161761727|gb|ABX77369.1| DNA helicase II [Coxiella burnetii RSA 331] Length = 720 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 70/196 (35%), Gaps = 45/196 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 E+ ++ ++ + E + P V A AGSGKT +L R+ L+ N P ++L Sbjct: 2 ENLSLLESLNPPQKE--AVTSPFDHVLVLAGAGSGKTRVLTHRIAWLIQQKNVSPYSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ ++ Sbjct: 60 VTFTNKAAYEMRGRIESMLGMP-------------------------------------- 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + V T H +++ +A + F I D + +LI ++ ++ L+ ++ Sbjct: 82 MGAMWVGTFHGLAHRLLRAHWKDAGLPQSFQILDTDDQYRLIRRMQR----NLNLEESQW 137 Query: 188 LKKAFYEILEISNDED 203 K + +E Sbjct: 138 PPKQTQWFINKQKEEG 153 >gi|306835613|ref|ZP_07468623.1| ATP-dependent DNA helicase PcrA [Corynebacterium accolens ATCC 49726] gi|304568504|gb|EFM44059.1| ATP-dependent DNA helicase PcrA [Corynebacterium accolens ATCC 49726] Length = 847 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 41/160 (25%) Query: 20 TKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 +QL A + R + A AGSGKT +L +R+ L+ +P +L +T T AAAE Sbjct: 53 LNPQQLEAVTHTGRPLLIVAGAGSGKTAVLTRRIAYLMRHRGVNPWEILAITFTNKAAAE 112 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV ++ + + V T H Sbjct: 113 MKERVGSLVGPVAE--------------------------------------RMWVSTFH 134 Query: 138 AFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176 + C I++Q + ++F I D + +++L+ K Sbjct: 135 SICVRILRQNAQLVPGLNTNFTIYDGDDARRLLSMIAKDM 174 >gi|260892971|ref|YP_003239068.1| UvrD/REP helicase [Ammonifex degensii KC4] gi|260865112|gb|ACX52218.1| UvrD/REP helicase [Ammonifex degensii KC4] Length = 707 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 58/165 (35%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71 +D + + EQ A + V A AGSGKT +L R+ L+ P +L LT T Sbjct: 1 MDWLKELNPEQRAAVEHGEGPLLVLAGAGSGKTRVLTYRIAYLITYRGVPPEAILALTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ + L Sbjct: 61 NKAAEEMRARVTSLLPREAE--------------------------------------DL 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HA C +++Q FAI DE+ + L+ E + Sbjct: 83 WVMTFHAACARLLRQEIHHLGRDRDFAIYDEDDRRALMRECLREL 127 >gi|167836886|ref|ZP_02463769.1| DNA helicase II [Burkholderia thailandensis MSMB43] Length = 669 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPDKVDATDSFNRKFVELYQAYEQQCQREGVVD 185 >gi|114775529|ref|ZP_01451097.1| UvrD/REP helicase family protein [Mariprofundus ferrooxydans PV-1] gi|114553640|gb|EAU56021.1| UvrD/REP helicase family protein [Mariprofundus ferrooxydans PV-1] Length = 1105 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 11/220 (5%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 +L A +P S V A AGSGKT +L QR+LRLL P +L LT T+ AAAEM RVL Sbjct: 6 RLQARNPAASFLVQAPAGSGKTELLTQRILRLLAVVDAPEEILALTFTRKAAAEMRGRVL 65 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 E + E + K+ + ++ ++++ + + P L++ T+ +F A+ Sbjct: 66 EALAMT-----EPVDPASHKMDTWRLAQAALARSNACGWHLEKHPSRLRMMTLDSFTHAL 120 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 Q PL + A + L EA + + ++L + + + A + + N Sbjct: 121 ASQMPLLSGFGRMPAACNYP--LPLYREAAELAVEKMILRSPD--RAAVLLLHQDHNSVA 176 Query: 204 IETLISDIISNRTALKLIFFFFSYL--WRRKIIEKSLWSI 241 + L++ ++ R + R ++E SL++I Sbjct: 177 LINLVAAMLGRRDQWLRDVQLHAGDTHALRAVLEDSLFAI 216 >gi|184201466|ref|YP_001855673.1| ATP-dependent DNA helicase PcrA [Kocuria rhizophila DC2201] gi|183581696|dbj|BAG30167.1| ATP-dependent DNA helicase UvrD1 [Kocuria rhizophila DC2201] Length = 818 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L++ Q A + + + A AGSGKT +L R+ LL A +L +T T Sbjct: 36 LVAGLNEPQRAAVEHSGAPLLIVAGAGSGKTRVLTHRIAHLLATGRARRGEILAITFTNK 95 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ E++ + + + Sbjct: 96 AAAEMRERIAELVGDSART--------------------------------------MWI 117 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ + ++F+I D S +LI + K Sbjct: 118 STFHSLCVRILRREAKTLGLNTNFSIYDSADSLRLITQVAKQ 159 >gi|153206879|ref|ZP_01945697.1| DNA helicase II [Coxiella burnetii 'MSU Goat Q177'] gi|165918247|ref|ZP_02218333.1| DNA helicase II [Coxiella burnetii RSA 334] gi|120576952|gb|EAX33576.1| DNA helicase II [Coxiella burnetii 'MSU Goat Q177'] gi|165918107|gb|EDR36711.1| DNA helicase II [Coxiella burnetii RSA 334] Length = 720 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 70/196 (35%), Gaps = 45/196 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 E+ ++ ++ + E + P V A AGSGKT +L R+ L+ N P ++L Sbjct: 2 ENLSLLESLNPPQKE--AVTSPFDHVLVLAGAGSGKTRVLTHRIAWLIQQKNVSPYSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ ++ Sbjct: 60 VTFTNKAAYEMRGRIESMLGMP-------------------------------------- 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + V T H +++ +A + F I D + +LI ++ ++ L+ ++ Sbjct: 82 MGAMWVGTFHGLAHRLLRAHWKDAGLPQSFQILDTDDQYRLIRRMQR----NLNLEESQW 137 Query: 188 LKKAFYEILEISNDED 203 K + +E Sbjct: 138 PPKQTQWFINKQKEEG 153 >gi|257790705|ref|YP_003181311.1| UvrD/REP helicase [Eggerthella lenta DSM 2243] gi|257474602|gb|ACV54922.1| UvrD/REP helicase [Eggerthella lenta DSM 2243] Length = 813 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 41/164 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 ID ++ + E ++ D V A AGSGKT +L R+ L+ + P +L +T T Sbjct: 5 IDSLNGPQREAVVTVD--GPLLVLAGAGSGKTRVLTYRIANLIENHDVAPWEILAITFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ ++ G+ Sbjct: 63 KAAAEMRERLNGLVGPRCR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C +++ + T +F I D + K+L +E Sbjct: 85 VSTFHSMCVRMLRSDAEKLGFTRNFTIYDTDDQKRLYKEIMAEL 128 >gi|116628401|ref|YP_821020.1| ATP-dependent exoDNAse beta subunit [Streptococcus thermophilus LMD-9] gi|122267004|sp|Q03IZ8|ADDA_STRTD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116101678|gb|ABJ66824.1| DNA helicase/exodeoxyribonuclease V, subunit A [Streptococcus thermophilus LMD-9] Length = 1217 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 78/223 (34%), Gaps = 31/223 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++V+R+L ++ L T T AA E+ Sbjct: 29 TPEQIEAIYSNGTNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + +T K +++ + R L + G + T+ AF Sbjct: 89 ERLEKRLT-------------------KHLGQAETDEERAFLSDQIAKIGTADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADE-EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-- 196 + ++ Q+ ++ F I + + + E M + +L + Sbjct: 130 TQKLVNQYGYLLGVSPTFRIMTDLAEQTLMKNEVYADLFNDYMQGKDAQLFQKLVRNFTG 189 Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + L+ DI F + K + ++L Sbjct: 190 HSKTSKAFRDLVYDI---------YSFSQATADPEKWLRQNLL 223 >gi|296268638|ref|YP_003651270.1| ATP-dependent DNA helicase PcrA [Thermobispora bispora DSM 43833] gi|296091425|gb|ADG87377.1| ATP-dependent DNA helicase PcrA [Thermobispora bispora DSM 43833] Length = 786 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D ++ + E +L + A AGSGKT +L R+ LL HP+ +L +T T Sbjct: 45 LLDGLNPQQREAVL--HQGSPLLIVAGAGSGKTRVLTHRIAYLLAERRVHPAEILAITFT 102 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ S L + Sbjct: 103 NKAAREMRDRVDRLVGPRSQL--------------------------------------M 124 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ ++F I D+ +++L+ + Sbjct: 125 WVMTFHSACVRILRREAKRLGYPTNFTIYDQADAQRLMAMVCREL 169 >gi|294054220|ref|YP_003547878.1| UvrD/REP helicase [Coraliomargarita akajimensis DSM 45221] gi|293613553|gb|ADE53708.1| UvrD/REP helicase [Coraliomargarita akajimensis DSM 45221] Length = 665 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 82/233 (35%), Gaps = 57/233 (24%) Query: 6 SFQEHSETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63 SF ID ++ EQ A +DP A V A AGSGKT L RV LL A Sbjct: 7 SFSSAFAPIDFRAELNDEQYAAVTADPG-PALVLAGAGSGKTRTLTYRVAYLLHAGVQAH 65 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L LT T AA EM RV ++ Sbjct: 66 EILLLTFTNKAAREMLERVEDLTAVSRR-------------------------------- 93 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 L T H+ + I++Q + H+ I DE +++ L++ A + + Sbjct: 94 ------QLWGGTFHSIAQRILRQHGEHIGLKRHYTILDESEAESLLKNAINAVDPKFIKG 147 Query: 184 NNEELKKAFYEILEISND----------------EDIETLISDIISNRTALKL 220 N K ++ + + +D+ I+DI + A+KL Sbjct: 148 KNNPKPKVVANMISYARNTCRSVYEEADDHFPFLDDMAQKIADIYTKYQAMKL 200 >gi|150024269|ref|YP_001295095.1| ATP-dependent DNA helicase UvrD [Flavobacterium psychrophilum JIP02/86] gi|149770810|emb|CAL42275.1| Probable ATP-dependent DNA helicase, UvrD/REP family [Flavobacterium psychrophilum JIP02/86] Length = 1052 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 94/209 (44%), Gaps = 11/209 (5%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEII 86 P S + +A+AGSGKT+ LV+ L+++L H +L +T T A EM R+++ + Sbjct: 4 PAFSIY-NASAGSGKTYTLVKEYLKIILKAKHNDAYKNILAITFTNKAVFEMKTRIIDSL 62 Query: 87 TAWSHLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 +S + S ++ GK+ N +KA+ ++ I+ + TI F + Sbjct: 63 FDFSKDNPTEKSIQLMNDLGKEINLNQSQIKTKAQSIIKNIIHNYAAFDISTIDKFTHKV 122 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ F + + F ++ + ++ L++EA + +A D + L K + D+D Sbjct: 123 IRAFAFDLGLPITFDVSLDTEN--LLQEAVDAIVAQAGED--QVLTKLLVDFTMEKTDDD 178 Query: 204 IETLISDIISNRTALKLIFFFFSYLWRRK 232 IS I N L L + + K Sbjct: 179 KSWDISSEIMNTGRLVLNENYREEILSLK 207 >gi|260220810|emb|CBA28747.1| DNA helicase II [Curvibacter putative symbiont of Hydra magnipapillata] Length = 872 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 76/235 (32%), Gaps = 46/235 (19%) Query: 5 NSFQEHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62 +SF T L+ EQL A P A + A AGSGKT +L R+ LL P Sbjct: 59 HSFAAAGSTPPLLHNLNPEQLAAVTLPAEHALILAGAGSGKTRVLTTRIAWLLQNGYVSP 118 Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122 +L +T T AA EM R+ ++ Sbjct: 119 GGILAVTFTNKAAKEMMTRLSAMLPV---------------------------------- 144 Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 G+ + T H C ++ A + F I D + A K + Sbjct: 145 ----NVRGMWIGTFHGLCNRFLRAHFKNAGLPQAFQILDTQDQLS----AIKRLCKQYKI 196 Query: 183 DNNEELKKAFYEILEISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIE 235 D+ K + +E + +++ R +++ + R +++ Sbjct: 197 DDERFPPKQMAWFIGNCKEEGLRPKDVVASDPDTRKKIEIYQLYEDQCQREGVVD 251 >gi|254373504|ref|ZP_04988991.1| hypothetical protein FTCG_01457 [Francisella tularensis subsp. novicida GA99-3549] gi|151571229|gb|EDN36883.1| hypothetical protein FTCG_01457 [Francisella novicida GA99-3549] Length = 740 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 43/190 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q R+A + A AGSGKT +L R+ L +L +T T AA Sbjct: 8 LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTNKAA 67 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ RV +++ + G+ + T Sbjct: 68 KEIQQRVEKMLGISTF--------------------------------------GMWIGT 89 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H ++++ E + +F I D+++ +L K + ++ LD+ + K Sbjct: 90 FHGIAHRLLRKHAHELGLDKNFRILDQDEQAQL----VKKVINNLDLDDKKYPPKLLQNF 145 Query: 196 LEISNDEDIE 205 + D+ I Sbjct: 146 INKQKDKAIR 155 >gi|254374966|ref|ZP_04990446.1| DNA helicase II [Francisella novicida GA99-3548] gi|151572684|gb|EDN38338.1| DNA helicase II [Francisella novicida GA99-3548] Length = 740 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 43/190 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q R+A + A AGSGKT +L R+ L +L +T T AA Sbjct: 8 LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSVENILAVTFTNKAA 67 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ RV +++ + G+ + T Sbjct: 68 KEIQQRVEKMLGISTF--------------------------------------GMWIGT 89 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H ++++ E + +F I D+++ +L K + ++ LD+ + K Sbjct: 90 FHGIAHRLLRKHAHELGLDKNFRILDQDEQAQL----VKKVINNLDLDDKKYPPKLLQNF 145 Query: 196 LEISNDEDIE 205 + D+ I Sbjct: 146 INKQKDKAIR 155 >gi|260590017|ref|ZP_05855930.1| ATP-dependent DNA helicase PcrA [Blautia hansenii DSM 20583] gi|331084334|ref|ZP_08333438.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 6_1_63FAA] gi|260539529|gb|EEX20098.1| ATP-dependent DNA helicase PcrA [Blautia hansenii DSM 20583] gi|330401598|gb|EGG81179.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 6_1_63FAA] Length = 736 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 43/184 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ + A AGSGKT +L R+ L+ +P ++ +T T AA EM Sbjct: 8 NTEQREAVFHTEGPVLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTNKAAGEM 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +I+ + + V T H+ Sbjct: 68 RERVDKIVGFGAE--------------------------------------SIWVSTFHS 89 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++++F ++F I D + K L+++ K + +D +KA + Sbjct: 90 SCVRMLRRFIDRLGYDTNFTIYDADDQKTLMKDICKR----LNIDTKVYKEKAILAAISS 145 Query: 199 SNDE 202 + DE Sbjct: 146 AKDE 149 >gi|89069676|ref|ZP_01157013.1| Putative uvrD/DNA Helicase II [Oceanicola granulosus HTCC2516] gi|89044756|gb|EAR50862.1| Putative uvrD/DNA Helicase II [Oceanicola granulosus HTCC2516] Length = 794 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 72/198 (36%), Gaps = 44/198 (22%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q +D ++ + + A + + A AG+GKT L R++ LL A P+ +L Sbjct: 23 QSAPPYLDGLNPAQRAAVEALE--GPVLMLAGAGTGKTKALTTRIVHLLCTGSARPNEIL 80 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ + Sbjct: 81 AVTFTNKAAREMKSRIGGQLGEAVE----------------------------------- 105 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ C ++++ A + S+F I D + +L+++ +A+ +D+ Sbjct: 106 --GMPWLGTFHSICVKLLRRHAELAGLKSNFTILDTDDQIRLLKQ----LVAAANIDDKR 159 Query: 187 ELKKAFYEILEISNDEDI 204 + +++ + Sbjct: 160 WPARMLAGVIDNWKNRAW 177 >gi|319947691|ref|ZP_08021905.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4] gi|319438641|gb|EFV93547.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4] Length = 824 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 80/225 (35%), Gaps = 46/225 (20%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 HS +D ++ + + + A AGSGKT +L +R+ LL AHP +L + Sbjct: 15 HSPLLDGLN--PQQAAAVTHRGGPLLIVAGAGSGKTSVLTRRIAYLLAEGGAHPGQILAI 72 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AAAEM RV ++ + Sbjct: 73 TFTNKAAAEMRERVAALVGPHAE------------------------------------- 95 Query: 129 GGLKVQTIHAFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + V T H+ C I++ S+F I D + S++L+ K + Sbjct: 96 -RMWVATFHSICVRILRAQSALLGTRNSNFTIYDSDDSRRLLGMIAKEQQLEVKKFTPRM 154 Query: 188 LKKAFYEILEISND--EDIETLISDIISNRTALKLIFFFFSYLWR 230 L A D E ++ + D S+RTA + F Y R Sbjct: 155 LASAISNHKNELRDPAEAMDRALED--SDRTAQTVAAVFTEYQAR 197 >gi|170077156|ref|YP_001733794.1| ATP-dependent DNA helicase II PcrA [Synechococcus sp. PCC 7002] gi|169884825|gb|ACA98538.1| ATP-dependent DNA helicase II PcrA [Synechococcus sp. PCC 7002] Length = 788 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 67/171 (39%), Gaps = 17/171 (9%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++Q Q A + V A AGSGKT L R+ L+ + P +L +T T Sbjct: 3 DLLAQLNPSQRRAVEHFCGPLLVVAGAGSGKTRALTFRIAHLIRNHRVDPENILAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV + ++ + K G P + + + L Sbjct: 63 KAAREMKERVE------LLYAQQLAELQHGKPLGGLPEFEQKKLRSQVYKQVTKQ---LW 113 Query: 133 VQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAKKSTL 177 + T H+ C I++ ++ E T +F I D+ + LI+ L Sbjct: 114 IGTFHSLCARILRYDINKYQDERGRTWQRNFTIMDDSDVQTLIKRIVTQQL 164 >gi|20807099|ref|NP_622270.1| superfamily I DNA/RNA helicase [Thermoanaerobacter tengcongensis MB4] gi|20515591|gb|AAM23874.1| Superfamily I DNA and RNA helicases [Thermoanaerobacter tengcongensis MB4] Length = 713 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 75/221 (33%), Gaps = 50/221 (22%) Query: 12 ETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 + ++++ +Q A + + A AGSGKT +L R+ L+ PS +L +T Sbjct: 6 KMKEILANLNEQQKEAVTTTEGPLLILAGAGSGKTRVLTHRIAYLIKEKKVSPSNILAIT 65 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV ++ G Sbjct: 66 FTNKAAEEMKTRVENLLGYV---------------------------------------G 86 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 L V T H+ C I+++ + +F I D K L++E L + L + Sbjct: 87 DLWVSTFHSACVRILRRDIDKLGYDRNFVIFDTTDQKALVQEC----LKELDLSEKQYPI 142 Query: 190 KAFYEILEISNDE-----DIETLISDIISNRTALKLIFFFF 225 K + + D+ D D NR ++ + Sbjct: 143 KMVLNAISSAKDKMVYPDDYIDFFGDTYRNRKIKEIYKLYQ 183 >gi|227872193|ref|ZP_03990560.1| possible ATP-dependent deoxyribonuclease subunit A [Oribacterium sinus F0268] gi|227841976|gb|EEJ52239.1| possible ATP-dependent deoxyribonuclease subunit A [Oribacterium sinus F0268] Length = 1283 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 92/224 (41%), Gaps = 33/224 (14%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 + T+ ++ + + + VSA AGSGKT +LV+ VL L+L NA S+L+ +T T+AA Sbjct: 1 MALWTEEQKAVIAHREGNLLVSAAAGSGKTAVLVEHVLSLILEENASLSSLVLMTFTEAA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ + + + + +L I P + Sbjct: 61 AEEMKERIKKRLEEHLQKGYD----------------------KRILREIALLPT-ANIS 97 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TIHAFC+ ++++ +I +HF I D + L + + L E + Sbjct: 98 TIHAFCKRLIEENYAGLSIDAHFRIGDTGEMSLLQSDILEEILEEEYERKEESFLAFVDQ 157 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 D+ IE LI LKL + + + ++ L Sbjct: 158 FSMGKKDKGIEELI---------LKLYNLASAMPFPKAYLQGLL 192 >gi|167816120|ref|ZP_02447800.1| putative helicase [Burkholderia pseudomallei 91] Length = 703 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185 >gi|298207221|ref|YP_003715400.1| putative helicase [Croceibacter atlanticus HTCC2559] gi|83849857|gb|EAP87725.1| putative helicase [Croceibacter atlanticus HTCC2559] Length = 1054 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 10/173 (5%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +A+AGSGKT LV+ L LL + ++L +T T A AEM R++E + A+S + Sbjct: 10 NASAGSGKTFSLVRDYLSLLFSAKKTDAFRSILAITFTNKAVAEMKSRIVENLIAFSKDN 69 Query: 94 -DEILSAEITKIQGKKPNKSDMSKARH--LLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + A + + D+ K R LL ++ ++ TI F +++ F + Sbjct: 70 TQDDYLAMLNAVANSTNISQDLIKTRSVILLKKLIHNYAAFEISTIDGFTHRVLRTFAKD 129 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + S+F + + ++ EA +A D +EL K + D+D Sbjct: 130 LGLPSNFEVTMQVD--DILHEAVDKLIAKAGED--KELTKVLIDFALSKADDD 178 >gi|145295025|ref|YP_001137846.1| hypothetical protein cgR_0969 [Corynebacterium glutamicum R] gi|140844945|dbj|BAF53944.1| hypothetical protein [Corynebacterium glutamicum R] Length = 763 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 41/165 (24%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 DLI +Q A + S + A AGSGKT +L +R+ L+ HP +L +T T Sbjct: 12 DLIDGLNEQQRAAVEHIGSPLLIVAGAGSGKTAVLTRRIAYLMRYRGVHPQQILAITFTN 71 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV +++ + + Sbjct: 72 KAAAEMRERVSQLVGPVAE--------------------------------------RMW 93 Query: 133 VQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I++Q + ++F I D + S++L+ K Sbjct: 94 VATFHSVCVRILRQQAQLVEGLNTNFTIYDSDDSRRLLTMIAKDL 138 >gi|227832630|ref|YP_002834337.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] gi|227453646|gb|ACP32399.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] Length = 852 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 63/173 (36%), Gaps = 42/173 (24%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPST 64 S Q ++ ++ + E + + A AGSGKT +L +R+ L+ P Sbjct: 47 SGQASDPLLEGLNPQQEE--AVTHSGSPLLIVAGAGSGKTAVLTRRIAYLMRERGVAPWQ 104 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AAAEM RV +++ + Sbjct: 105 ILAITFTNKAAAEMKERVGQLVGPVAE--------------------------------- 131 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I++ + ++F I D + +++L+ K Sbjct: 132 -----RMWVSTFHSICVRILRNNAQLVPGLNTNFTIYDGDDARRLLTMIAKDM 179 >gi|262182885|ref|ZP_06042306.1| putative ATP-dependent DNA helicase II [Corynebacterium aurimucosum ATCC 700975] Length = 841 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 63/173 (36%), Gaps = 42/173 (24%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPST 64 S Q ++ ++ + E + + A AGSGKT +L +R+ L+ P Sbjct: 36 SGQASDPLLEGLNPQQEE--AVTHSGSPLLIVAGAGSGKTAVLTRRIAYLMRERGVAPWQ 93 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AAAEM RV +++ + Sbjct: 94 ILAITFTNKAAAEMKERVGQLVGPVAE--------------------------------- 120 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I++ + ++F I D + +++L+ K Sbjct: 121 -----RMWVSTFHSICVRILRNNAQLVPGLNTNFTIYDGDDARRLLTMIAKDM 168 >gi|257064330|ref|YP_003144002.1| DNA/RNA helicase, superfamily I [Slackia heliotrinireducens DSM 20476] gi|256791983|gb|ACV22653.1| DNA/RNA helicase, superfamily I [Slackia heliotrinireducens DSM 20476] Length = 772 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 64/161 (39%), Gaps = 41/161 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 ID +++ + E +L ++ V A AGSGKT +L R+ ++ N P ++ +T T Sbjct: 4 IDSLNEPQREAVLCTE--GPLLVLAGAGSGKTRVLTYRIAHMVQDLNVPPWQIMAITFTN 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 62 KAANEMRERLGRLVGPSAR--------------------------------------GMW 83 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 V T H+ C I++ + F I D++ +K+L+++ Sbjct: 84 VSTFHSMCVRILRVDCELLGFSKSFTIYDDDDTKRLLKDVM 124 >gi|167719901|ref|ZP_02403137.1| DNA helicase II [Burkholderia pseudomallei DM98] Length = 535 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQLAAVTLPNEPALILAGAGSGKTRVLITRIAWLIRQGYAAPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPEKVDATDSFNRKFVELYQAYEQQCQREGVVD 185 >gi|119964268|ref|YP_946829.1| ATP-dependent DNA helicase PcrA [Arthrobacter aurescens TC1] gi|119951127|gb|ABM10038.1| ATP-dependent DNA helicase PcrA [Arthrobacter aurescens TC1] Length = 848 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 78/215 (36%), Gaps = 51/215 (23%) Query: 16 LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ +Q A S + A AGSGKT +L R+ L+ AH +L +T T Sbjct: 72 LLQGLNPQQEEAVKHAGSPLLIVAGAGSGKTRVLSNRIAYLIATKRAHHGEILAITFTNK 131 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ ++ A + G+ + Sbjct: 132 AAAEMRERIEALVGARAK--------------------------------------GMWI 153 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASIML 182 T H+ C I+++ + S+F+I D S +LI K+ + + Sbjct: 154 STFHSSCVRILRREAANVGLNSNFSIYDSADSLRLITLVAKNLDLDPKKFAPKAIQHKIS 213 Query: 183 DNNEELKKAFYEILEISNDEDIETLISDIISNRTA 217 EL A + ++++ E ++++ T Sbjct: 214 ALKNELIDADSYVSSANHNDPFEQAVAEVFKGYTQ 248 >gi|300727037|ref|ZP_07060456.1| ATP-dependent DNA helicase PcrA [Prevotella bryantii B14] gi|299775581|gb|EFI72172.1| ATP-dependent DNA helicase PcrA [Prevotella bryantii B14] Length = 784 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 38/167 (22%) Query: 11 SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 E +L+SQ Q A + ++ V A AGSGKT +L ++ LL+ P +L LT Sbjct: 1 MEEKELLSQLNDSQRAAVEYLDGASLVIAGAGSGKTRVLTYKIAYLLMKGYEPWDILALT 60 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ ++ A +AR+L Sbjct: 61 FTNKAAKEMQSRIGSLVGA--------------------------DRARYL--------- 85 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I+++ +F I DE S+ LI+ K Sbjct: 86 --NMGTFHSIFARILRREAAHIGYNPNFTIYDEADSRSLIKTIIKEL 130 >gi|134295512|ref|YP_001119247.1| ATP-dependent DNA helicase UvrD [Burkholderia vietnamiensis G4] gi|134138669|gb|ABO54412.1| ATP-dependent DNA helicase UvrD [Burkholderia vietnamiensis G4] Length = 787 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 82/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRTHWRDAGLPQTFQILDTADQLS----AIKRLMKAANVDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPDKVDATDNFNRKFVELYQAYDQQCQREGVVD 185 >gi|222111848|ref|YP_002554112.1| uvrd/rep helicase [Acidovorax ebreus TPSY] gi|221731292|gb|ACM34112.1| UvrD/REP helicase [Acidovorax ebreus TPSY] Length = 826 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 72/224 (32%), Gaps = 46/224 (20%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L+ EQL A P A + A AGSGKT +L R+ LL A P +L +T T Sbjct: 43 LLQNLNPEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQNGLATPGGILAVTFTNK 102 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ G+ + Sbjct: 103 AAKEMLTRLSAMLPI--------------------------------------NVRGMWI 124 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ A + F I D + A K +D K Sbjct: 125 GTFHGLCNRLLRAHHKLAGLPQAFQILDTQDQLS----AIKRLCKQFNVDEERFPPKQLA 180 Query: 194 EILEISNDEDI--ETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 + +E + + + R ++L + R +++ Sbjct: 181 YFIAGCKEEGMRPRDVPAHDADTRKKVELYQLYEEQCQREGVVD 224 >gi|114707166|ref|ZP_01440064.1| DNA helicase II [Fulvimarina pelagi HTCC2506] gi|114537362|gb|EAU40488.1| DNA helicase II [Fulvimarina pelagi HTCC2506] Length = 849 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 73/198 (36%), Gaps = 44/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 + +D ++ ++ V A AG+GKT +L R+ +L A PS +L Sbjct: 29 QAPNYLDGLN--PEQRAAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGRAWPSQILA 86 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ ++ E Sbjct: 87 VTFTNKAAREMKARIGLLVGG-------------------------------------EV 109 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + T H+ I+++ + S+F I D + +LI++ + + LD+ Sbjct: 110 EGMPWLGTFHSIGVKILRKHAELVGLKSNFTILDTDDQIRLIKQ----LIQAENLDDKRW 165 Query: 188 LKKAFYEILEISNDEDIE 205 + F +L+ ++ +E Sbjct: 166 PARTFANMLDGWKNKGLE 183 >gi|134301332|ref|YP_001121300.1| DNA helicase II [Francisella tularensis subsp. tularensis WY96-3418] gi|134049109|gb|ABO46180.1| DNA helicase II [Francisella tularensis subsp. tularensis WY96-3418] Length = 740 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 43/190 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q R+A + A AGSGKT +L R+ L +L +T T AA Sbjct: 8 LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ RV +++ + G+ + T Sbjct: 68 KEIQQRVEKMLGISTF--------------------------------------GMWIGT 89 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H ++++ E + +F I D+++ +L K + ++ LD+ + K Sbjct: 90 FHGIAHRLLRKHAHELGLDKNFRILDQDEQAQL----VKKLINNLDLDDKKYPPKLLQNF 145 Query: 196 LEISNDEDIE 205 + D+ I Sbjct: 146 INKQKDKAIR 155 >gi|305432274|ref|ZP_07401437.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter coli JV20] gi|304444622|gb|EFM37272.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter coli JV20] Length = 920 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 10/171 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + L+L + +L LT TK A+ EM R++E S Sbjct: 7 LALEASAGSGKTFALSVRFVALILQGTKINEILALTFTKKASNEMKKRIIETFLNLEKES 66 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + E+ ++ G + ++ + + + + LK+ T +F I++ F L + Sbjct: 67 KKSECKELCELLGCEEDELIFLRDKKKQEFLRQ---ELKISTFDSFFSRILRAFALNLGL 123 Query: 154 TSHFAIADE--EQSKKLIEEAKKSTLASIM-----LDNNEELKKAFYEILE 197 +S F ++E + ++ + L + L++N + + E Sbjct: 124 SSDFDTSEEKLDVRAVFLKLLNRQELKDLAYYKVSLEDNHDFFEELENFYE 174 >gi|163754620|ref|ZP_02161742.1| putative helicase [Kordia algicida OT-1] gi|161325561|gb|EDP96888.1| putative helicase [Kordia algicida OT-1] Length = 1084 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 81/178 (45%), Gaps = 9/178 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWS 90 +A+AGSGKT+ LV+ LR+LL + +L +T T A AEM R+++ + ++ Sbjct: 43 IIYNASAGSGKTYTLVKDYLRILLKSVQKDTYKQILAVTFTNKAVAEMKARIIQNLNLFA 102 Query: 91 ---HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 + + E+ + P + K++ +L +IL +V TI F ++++ F Sbjct: 103 FDEASKNSPMFVELAEDLKLHPAQL-QQKSKDVLKSILHNYAFFEVSTIDKFTHSVIRTF 161 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 + + +F + E + L+ EA ++ D Y + + +D+ + Sbjct: 162 AYDLKLPLNFEV--ELDTDALLNEAVDQLISKAGEDKLISDVLIEYALEKADDDKSWD 217 >gi|302335487|ref|YP_003800694.1| UvrD/REP helicase [Olsenella uli DSM 7084] gi|301319327|gb|ADK67814.1| UvrD/REP helicase [Olsenella uli DSM 7084] Length = 1176 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 76/204 (37%), Gaps = 42/204 (20%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---------AHPSTLLCLTH 70 T + + R +V+A AGSGK+ L +RV L +L +T Sbjct: 6 TPGQAEIVHTLDRPLFVAAGAGSGKSSTLAERVAWALTPGSGAKGTAFLESLDQVLVITF 65 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T+AAA E+ ++ + L+D+ L+ Sbjct: 66 TRAAAEEIKEKIRARLRE-GGLADQALAV-----------------------------DS 95 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELK 189 + TIHA C I+++ + I F + E+ K+++EEA L + D L Sbjct: 96 AWISTIHAMCSRILRRHAFDLGIDLGFEVLSEKDGKRMVEEAVDEVLRDVRYDEGYASLL 155 Query: 190 KAFYEILEISNDEDIETLISDIIS 213 +AF D + + ++++ Sbjct: 156 RAFSP--RDRRGADAKGTLFEMVA 177 >gi|19552081|ref|NP_600083.1| helicase [Corynebacterium glutamicum ATCC 13032] gi|62389744|ref|YP_225146.1| ATP-dependent helicase PcrA [Corynebacterium glutamicum ATCC 13032] gi|21323620|dbj|BAB98247.1| Superfamily I DNA and RNA helicases [Corynebacterium glutamicum ATCC 13032] gi|41325079|emb|CAF19560.1| ATP-DEPENDENT HELICASE PCRA [Corynebacterium glutamicum ATCC 13032] Length = 763 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 41/165 (24%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 DLI +Q A + S + A AGSGKT +L +R+ L+ HP +L +T T Sbjct: 12 DLIDGLNEQQRAAVEHIGSPLLIVAGAGSGKTAVLTRRIAYLMRYRGVHPQQILAITFTN 71 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV +++ + + Sbjct: 72 KAAAEMRERVSQLVGPVAE--------------------------------------RMW 93 Query: 133 VQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I++Q + ++F I D + S++L+ K Sbjct: 94 VATFHSVCVRILRQQAQLVEGLNTNFTIYDSDDSRRLLTMIAKDL 138 >gi|331091397|ref|ZP_08340236.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 2_1_46FAA] gi|330404261|gb|EGG83808.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 2_1_46FAA] Length = 741 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ + A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 8 NTEQKEAVLHTEGPLLILAGAGSGKTRVLTHRISYLIEEKGVNPWNILAITFTNKAAGEM 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +I+ S + V T H+ Sbjct: 68 RERVDKIVGFGSE--------------------------------------SIWVSTFHS 89 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 C I+++ ++F I D + K L+++ K Sbjct: 90 MCVRILRRHIDRLGYDTNFTIYDTDDQKTLMKDVCK 125 >gi|281490502|ref|YP_003352482.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp. lactis KF147] gi|281374320|gb|ADA63853.1| ATP-dependent nuclease, subunit A [Lactococcus lactis subsp. lactis KF147] Length = 1203 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 35/230 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + T + ++ VSA+AGSGKT ++ QR++ + L T TK AA+ Sbjct: 4 VKLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAAS 63 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R+ + + SD ++AR L L+ + T+ Sbjct: 64 ELRMRLERDLKK------------------ARQESSDENQARRL-TLALQNLSNADIGTM 104 Query: 137 HAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNN------EELK 189 +F + + + NI +F I D+ +S + +E + + S + ++ E+ + Sbjct: 105 DSFTQKLTKTNFNRVNIDPNFRILADQTESDLIRQEVFEQLVESYLSGDDGLNISKEKFE 164 Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + + N + ++ I F + K +E Sbjct: 165 ELIKNFSKDRNIAGFQKVVYTI---------YRFASATENPIKWLENQFL 205 >gi|309811913|ref|ZP_07705685.1| ATP-dependent DNA helicase PcrA [Dermacoccus sp. Ellin185] gi|308434125|gb|EFP57985.1| ATP-dependent DNA helicase PcrA [Dermacoccus sp. Ellin185] Length = 897 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 + + A AGSGKT +L R+ L+ A A P +L +T T AAAEM Sbjct: 109 NPQQAQAVEHFGTPLLIVAGAGSGKTRVLTHRIAYLMAARGAQPGQILAITFTNKAAAEM 168 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + + V T H+ Sbjct: 169 RERVEQLVGGAA--------------------------------------NAMWVSTFHS 190 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + S F+I D S++L+ + Sbjct: 191 ACVRILRREAKHVGLRSTFSIYDAADSQRLMAMVTRDL 228 >gi|229829264|ref|ZP_04455333.1| hypothetical protein GCWU000342_01351 [Shuttleworthia satelles DSM 14600] gi|229792427|gb|EEP28541.1| hypothetical protein GCWU000342_01351 [Shuttleworthia satelles DSM 14600] Length = 753 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 82/226 (36%), Gaps = 47/226 (20%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68 S+ +DL+++ ++ + A AGSGKT +L R L+ P ++ + Sbjct: 1 MSKILDLLNE--QQRDGVLTTEGPVLILAGAGSGKTRVLTHRAAYLIDEKGVAPYQIMAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R+ ++++ Sbjct: 59 TFTNKAAEEMRERINKLVSFGGE------------------------------------- 81 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + V T H+ C I+++F S F I D + K LI++ K + +D Sbjct: 82 -AVWVATFHSSCVKILRRFADRVGYDSRFTIYDGDDQKSLIKDVCK----YLDIDTKIHK 136 Query: 189 KKAFYEILEISNDE--DIETLISDIISNRTALKLIFFFFSYLWRRK 232 +++F ++ + + ET + + + + + Y R K Sbjct: 137 ERSFLSVISHAKENLVGPETFLQEAAGDFNRTRQGQVYREYQARLK 182 >gi|298293080|ref|YP_003695019.1| UvrD/REP helicase [Starkeya novella DSM 506] gi|296929591|gb|ADH90400.1| UvrD/REP helicase [Starkeya novella DSM 506] Length = 833 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 71/193 (36%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ + E + A+D V A AG+GKT +L R+ +L A PS +L +T T Sbjct: 67 YLDGLNPEQREAVEATD--GPVLVLAGAGTGKTRVLTTRIAHILSLGLAWPSQILAVTFT 124 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ E G Sbjct: 125 NKAAREMKERIHAMVGE-------------------------------------EVEGMP 147 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ ++++ + S F I D + +L+++ L + +D + Sbjct: 148 WLGTFHSIGVRMLRRHAELVGLKSGFTILDTDDQIRLLKQ----LLRAENIDEKRWPARL 203 Query: 192 FYEILEISNDEDI 204 I++ + + Sbjct: 204 LANIIDGWKNRGL 216 >gi|332045229|gb|EGI81422.1| UvrD/REP helicase [Lacinutrix algicola 5H-3-7-4] Length = 1052 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 8/179 (4%) Query: 37 SANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +A+AGSGKT+ LV+ L++L + N +L +T T A EM R+LE++ +S Sbjct: 11 NASAGSGKTYTLVKEYLKILFSTSSNYQFKNILAITFTNKAVGEMKARILEMLNVFSSTH 70 Query: 94 DEILSAEIT---KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + + + + +K+ KA +L TI+ + TI F +++ F + Sbjct: 71 NLNEPHAMFFDIAQELEMEHKALQKKAEIILQTIMHNYAAFDISTIDGFNHRLIRTFAHD 130 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209 + +F + E + ++ EA +A + + I + +D+ + + Sbjct: 131 LKLPLNFEV--ELDTDSILSEAVDRLIAKAGANKALTKVLVDFAIEKADDDKSWDVALD 187 >gi|297192605|ref|ZP_06910003.1| ATP-dependent DNA helicase II [Streptomyces pristinaespiralis ATCC 25486] gi|297151430|gb|EFH31159.1| ATP-dependent DNA helicase II [Streptomyces pristinaespiralis ATCC 25486] Length = 811 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 74/197 (37%), Gaps = 45/197 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 + +D +++ ++ + A AGSGKT +L R+ LL HP +L +T Sbjct: 63 AALLDGLNE--QQRAAVVHTGSPLLIVAGAGSGKTRVLTHRIAHLLGTRRVHPGQILAIT 120 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV +++ + Sbjct: 121 FTNKAAGEMKERVEQLVGPRA--------------------------------------N 142 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + V T H+ C I+++ + TS F+I D SK+L+ + + LD + Sbjct: 143 AMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMSLVCRD----LDLDPKKFPP 198 Query: 190 KAFYEILEISNDEDIET 206 K+F + +E I+ Sbjct: 199 KSFSAKISNLKNELIDE 215 >gi|284036711|ref|YP_003386641.1| exodeoxyribonuclease V [Spirosoma linguale DSM 74] gi|283816004|gb|ADB37842.1| Exodeoxyribonuclease V [Spirosoma linguale DSM 74] Length = 1120 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 88/204 (43%), Gaps = 20/204 (9%) Query: 37 SANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 S++AGSGKT+ L + L+L L + + +L +T T AAA EM +R+L+ ++ + Sbjct: 6 SSSAGSGKTYTLTKEYLKLALRPGEKDDYFRRILAVTFTNAAANEMKNRILKNLSEMAGK 65 Query: 93 SDEILSAEITKIQGKKPNKSDM---------SKARHLLITILETPGGLKVQTIHAFCEAI 143 + L E+ P SD+ S+A + TIL V TI +F + + Sbjct: 66 KESPLLNELVTELYDTPPGSDLFEDKKTELCSRASSVFRTILHRYADFSVTTIDSFTQRV 125 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-----EI 198 + F E + F + E + +++E A + + D EE+ E E Sbjct: 126 VMAFTDELGLPYSFDV--EMDTDEVLELAIDNLIEKAGTDEMEEITTILSEYYTHTAAEG 183 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 + + L+ + N T+ + Sbjct: 184 KSWNQLPELLKEFGRNLTSDQFYE 207 >gi|154245373|ref|YP_001416331.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] gi|154159458|gb|ABS66674.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] Length = 817 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 43/192 (22%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D ++ EQ A + V A AG+GKT +L RV +L A+PS +L +T T Sbjct: 38 DYLNGLNPEQREAVETLDGPLLVLAGAGTGKTRVLTARVAHILSQGRAYPSQILVVTFTN 97 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G Sbjct: 98 KAAREMKDRIHAMVGD-------------------------------------QIEGMPW 120 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ I+++ + S F I D + +L+++ LA+ +D + Sbjct: 121 LGTFHSIGVRILRRHHELVGLKSGFTILDTDDQIRLLKQ----LLAAENIDEKRWPARLL 176 Query: 193 YEILEISNDEDI 204 ++ + + Sbjct: 177 ASTIDSWKNRGL 188 >gi|290958050|ref|YP_003489232.1| ATP-dependent DNA helicase II [Streptomyces scabiei 87.22] gi|260647576|emb|CBG70681.1| putative ATP-dependent DNA helicase II [Streptomyces scabiei 87.22] Length = 836 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 62/169 (36%), Gaps = 41/169 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 + + +D ++ ++ + A AGSGKT +L R+ LL HP +L Sbjct: 65 DAAALLDGLNDN--QRAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLGERRVHPGQILA 122 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV +++ + Sbjct: 123 ITFTNKAAGEMKERVEQLVGPRA------------------------------------- 145 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ + TS F+I D SK+L+ + Sbjct: 146 -NAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRDL 193 >gi|225868711|ref|YP_002744659.1| ATP-dependent exonuclease subunit A [Streptococcus equi subsp. zooepidemicus] gi|251764568|sp|C0MGY6|ADDA_STRS7 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|225701987|emb|CAW99551.1| putative ATP-dependent exonuclease subunit A [Streptococcus equi subsp. zooepidemicus] Length = 1214 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 87/236 (36%), Gaps = 30/236 (12%) Query: 7 FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 Q+ D + ++Q+ A ++ VSA+AGSGKT ++V+R+L +L L Sbjct: 16 LQQEEALSDKTHKRTAQQIEAIYSSGQNILVSASAGSGKTFVMVERILDKILRGIPVDRL 75 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 T T AA E+ R+ + + + + + + L L Sbjct: 76 FISTFTVKAATELIERIEKKLHTAIAETQDY-------------------QLKAYLNDQL 116 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184 + + T+ AF + ++ Q I+ HF I D+ + L E + M Sbjct: 117 QALSQADIGTMDAFAQKLVHQHGYVLGISPHFRIIQDKAEQDILKREVFRQVFEDYMSQT 176 Query: 185 NEELKKAFYEIL-EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + KAF +++ S + +I+ + + F S + + Sbjct: 177 D---NKAFIQLVQNFSGRRKDSSAFREIVDS-----IYAFSQSTANPSSWLAEVFL 224 >gi|56696067|ref|YP_166421.1| DNA helicase II, putative [Ruegeria pomeroyi DSS-3] gi|56677804|gb|AAV94470.1| DNA helicase II, putative [Ruegeria pomeroyi DSS-3] Length = 779 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 77/195 (39%), Gaps = 44/195 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 + +D ++ + E + D + A AG+GKT L R++ LL+ A P+ +L +T Sbjct: 6 APYLDDLNPAQREAVERLD--GPVLMLAGAGTGKTKALTARIVHLLMTGRARPNEILAVT 63 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM +RV ++ + G Sbjct: 64 FTNKAAREMKNRVGRLLGQPAE-------------------------------------G 86 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + T H+ C ++++ ++ S+F I D + +L+++ + + +D+ Sbjct: 87 MPWLGTFHSICVKLLRRHAELVDLKSNFTILDTDDQLRLLKQLVQ----AANIDDKRWPA 142 Query: 190 KAFYEILEISNDEDI 204 + I++ ++ + Sbjct: 143 RLLANIIDGWKNKAL 157 >gi|255535683|ref|YP_003096054.1| ATP-dependent DNA helicase UvrD/PcrA [Flavobacteriaceae bacterium 3519-10] gi|255341879|gb|ACU07992.1| ATP-dependent DNA helicase UvrD/PcrA [Flavobacteriaceae bacterium 3519-10] Length = 775 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 57/164 (34%), Gaps = 38/164 (23%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D + Q A V A AGSGKT +L R+ L+ P +L LT T Sbjct: 1 MDYLKGLNEAQYEAVTTLEGPLMVLAGAGSGKTRVLTMRIAHLITNLVDPFNILALTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +++ S+AR L Sbjct: 61 KAAKEMKERIAKVVGQ--------------------------SEARSL-----------W 83 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ S+F I D + S +I + K Sbjct: 84 MGTFHSVFARILRSEAHYLGYPSNFTIYDTQDSLNVIRKVLKEL 127 >gi|139474037|ref|YP_001128753.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes str. Manfredo] gi|251764552|sp|A2RFA8|ADDA_STRPG RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|134272284|emb|CAM30537.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes str. Manfredo] Length = 1210 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 92/238 (38%), Gaps = 28/238 (11%) Query: 7 FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 QE+ D + ++Q+ A ++ VSA+AGSGKT ++V+R+L +L L Sbjct: 16 LQENERYSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 75 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 T T AA E+ R+ + + + + + + L L Sbjct: 76 FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 116 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184 ++ + T+ AF + ++ ++ I+S F I D+ + L +E + M Sbjct: 117 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQK 176 Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 + +A + S + + +++ F S + ++++ S A Sbjct: 177 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 227 >gi|148273735|ref|YP_001223296.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831665|emb|CAN02634.1| ATP-dependent DNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 816 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 72/192 (37%), Gaps = 41/192 (21%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++ ++ + E ++ P + A AGSGKT +L R+ L+ + A PS +L +T T Sbjct: 34 LLEGLNPEQREAVVYRGPA--LLIVAGAGSGKTRVLTHRIASLIESREAWPSQILAITFT 91 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM RV ++ S G+ Sbjct: 92 NKAAAEMRERVESLLGQASE--------------------------------------GM 113 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C I+++ T +F I D S+ LI+ K A + + Sbjct: 114 WISTFHSACVRILRREAEAFGFTQNFTIYDSADSRVLIKRIIKQLDADTLGFTVSSVSGR 173 Query: 192 FYEILEISNDED 203 ++ +D D Sbjct: 174 ISKLKNELSDAD 185 >gi|93005845|ref|YP_580282.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5] gi|92393523|gb|ABE74798.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5] Length = 733 Score = 131 bits (331), Expect = 6e-29, Method: Composition-based stats. Identities = 50/203 (24%), Positives = 77/203 (37%), Gaps = 21/203 (10%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D S+ + QLLA+ V A AGSGKT L R L+ P +L LT T+ Sbjct: 58 VDYASELNANQLLAATTIEGKVLVIAGAGSGKTKTLTYRTSYLIENGVSPKEILLLTFTR 117 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA E+ R ++ + + + + K +D++ Sbjct: 118 KAANEIKGRARALLASTPSFAQRLNEDLVEDKLPKNKALNDITS---------------- 161 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKA 191 T H+FC +++Q+ I F I D S+ I+ K + N KK Sbjct: 162 -GTFHSFCNMLLRQYSGLLGINPRFTILDTGDSEDAIDLIHKEKKYPTKITNQAFPRKKT 220 Query: 192 FYEILEISNDEDIETLISDIISN 214 I S + I I D+I N Sbjct: 221 LQNIFSTSRNRRIH--IRDLIEN 241 >gi|260435507|ref|ZP_05789477.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 8109] gi|260413381|gb|EEX06677.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 8109] Length = 794 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 68/172 (39%), Gaps = 18/172 (10%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +D ++ +++ V A AGSGKT L R+ L+ P+ +L +T T Sbjct: 4 LDGLND--AQRRAVDHYQGPLLVVAGAGSGKTRALTHRIAHLIGEHGVDPAQILAVTFTN 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ S ++ ++S + + E L Sbjct: 62 KAAREMKERLELLLAQKLAQSQYGQPWSTLPAVEQRQSRSRIYR---------EVTKELW 112 Query: 133 VQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178 + T HA +++ +F + T F+I DE ++ L++E L Sbjct: 113 IGTFHALFARMLRYDIDKFQDSEGLTWTKQFSIYDEADAQSLVKEIVTQELQ 164 >gi|182412468|ref|YP_001817534.1| UvrD/REP helicase [Opitutus terrae PB90-1] gi|177839682|gb|ACB73934.1| UvrD/REP helicase [Opitutus terrae PB90-1] Length = 1109 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 80/214 (37%), Gaps = 10/214 (4%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 + A+AGSGKT+ L R +RLL A P ++ LT T+ AA E +L + + Sbjct: 5 GHVMILASAGSGKTYALTNRFVRLLALGAAPERIVALTFTRKAAGEFFDEILNKLARAAS 64 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 + + +P ++ LL +++ L++ TI F I + FPLE Sbjct: 65 DAAYARQ---LAAEIGRPAAMGTAEFLALLRRMVDAMHRLRLGTIDGFFARIARNFPLEL 121 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLA---SIMLDNNEELKKAFYEILEISNDEDIETLI 208 + F + +E ++ + + D E +AF ++ + + Sbjct: 122 GLAGEFELLEEHAARMERSRVLRQLFERPTDGLADAQREFIEAFKRATFGVEEKRLGAQL 181 Query: 209 SDIISNRTALKLIFFFFSYLW---RRKIIEKSLW 239 + + + W RR S W Sbjct: 182 DAFLDEHQEI-FLNASARDAWGDARRIWRNGSRW 214 >gi|302187828|ref|ZP_07264501.1| DNA-dependent helicase II [Pseudomonas syringae pv. syringae 642] Length = 727 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 68/185 (36%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSH 80 +++ + V A AGSGKT +LV R+ L+ + A P ++L +T T AAAEM H Sbjct: 15 AQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAEMRH 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ +P G+ T H Sbjct: 75 RIEQLMGI--------------------------------------SPAGMWGGTFHGLA 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + F I D + ++L K + + LD + + Sbjct: 97 HRLLRAHWQEAGLVQTFQILDSDDQQRL----VKRVMRELGLDEQRWPARQAQWFINGQK 152 Query: 201 DEDIE 205 DE + Sbjct: 153 DEGLR 157 >gi|282877935|ref|ZP_06286744.1| putative ATP-dependent helicase PcrA [Prevotella buccalis ATCC 35310] gi|281299936|gb|EFA92296.1| putative ATP-dependent helicase PcrA [Prevotella buccalis ATCC 35310] Length = 810 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 61/163 (37%), Gaps = 38/163 (23%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 DL+SQ EQ A V A AGSGKT +L ++ L+ P ++L LT T Sbjct: 3 DLLSQLNQEQRSAVTYNDGPQLVIAGAGSGKTRVLTYKIAYLVQQGMQPWSILALTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++I ET +++ Sbjct: 63 AANEMKQRIAQLIGQ-------------------------------------ETARYIQM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ TS F I DE S+ LI+ K Sbjct: 86 GTFHSIFSRILRIEADAIGYTSGFTIYDESDSRSLIKTIIKEM 128 >gi|320546489|ref|ZP_08040804.1| exonuclease RexA [Streptococcus equinus ATCC 9812] gi|320448874|gb|EFW89602.1| exonuclease RexA [Streptococcus equinus ATCC 9812] Length = 1208 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 81/218 (37%), Gaps = 27/218 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++V+R++ +L L T T AA E+ Sbjct: 29 TPEQIEAIYSSGNNILVSASAGSGKTFVMVERIIDKILRGVTVDQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ ++ + + + L L + T+ AF Sbjct: 89 ERLEKKISKVLQVTKD-------------------NDTKTYLNEQLLGLQTADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ Q+ I+ F I D+ + + E + ML N+ + + Sbjct: 130 TQKLVNQYGYTLGISPTFRIMTDKSEQDLVKNEVFADLFSDYMLGENQAIFRKLVR--NF 187 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 S + + +I+ K+ F + +K + + Sbjct: 188 SGNRKDSSAFREIV-----YKIYDFSQATDNPKKWMSE 220 >gi|296121114|ref|YP_003628892.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776] gi|296013454|gb|ADG66693.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776] Length = 845 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 42/166 (25%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 ++ +D + T S+ V A GSGKT ++ +R+ RL+ HP+ +L +T Sbjct: 1 MTQLLDDL--TPSQAAAVEHFEGPLLVLAGPGSGKTRVVTRRIARLIERRVHPAEILAIT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM+ RV +I Sbjct: 59 FTNKAAREMAERVEHLIPGR---------------------------------------- 78 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + V T H FC I++Q+ + +F+I D + ++EA K Sbjct: 79 RVAVSTFHKFCARILRQYGGVVGLKPNFSILDVKDQDAALKEAVKE 124 >gi|297201841|ref|ZP_06919238.1| ATP-dependent DNA helicase PcrA [Streptomyces sviceus ATCC 29083] gi|197717318|gb|EDY61352.1| ATP-dependent DNA helicase PcrA [Streptomyces sviceus ATCC 29083] Length = 826 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 + ++ +++ ++ + A AGSGKT +L R+ LL N HP +L +T Sbjct: 66 AALLEGLNEN--QRAAVVHSGTPLLIVAGAGSGKTRVLTHRIAHLLGERNVHPGQILAIT 123 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV +++ + Sbjct: 124 FTNKAAGEMKERVEQLVGPRA--------------------------------------N 145 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ + TS F+I D SK+L+ + Sbjct: 146 AMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRDL 192 >gi|160893045|ref|ZP_02073833.1| hypothetical protein CLOL250_00583 [Clostridium sp. L2-50] gi|156865128|gb|EDO58559.1| hypothetical protein CLOL250_00583 [Clostridium sp. L2-50] Length = 781 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 43/188 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 + + L + A AGSGKT ++ RV L+ +P +L +T T A Sbjct: 1 MAGLNDMQDLACRHVDGPLLILAGAGSGKTRVITHRVAYLMDEIGVNPYNILAITFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV I+ + + V Sbjct: 61 AAEMRDRVNNIVGEGAE--------------------------------------RVWVS 82 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C I+++F ++F I D + K A K+ L + +D + +K F Sbjct: 83 TFHSLCVRILRRFSDRLGYATNFNIYDSDDQKS----AVKNILKELKIDPKKYPEKMFMA 138 Query: 195 ILEISNDE 202 + + + Sbjct: 139 EISNAKER 146 >gi|323138754|ref|ZP_08073819.1| Exodeoxyribonuclease V [Methylocystis sp. ATCC 49242] gi|322396001|gb|EFX98537.1| Exodeoxyribonuclease V [Methylocystis sp. ATCC 49242] Length = 1130 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 7/163 (4%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + S RS V A AGSGKT ++ R+ +L P ++ +T T+ AA+ Sbjct: 8 LKDDGARRDAISLHDRSILVEAGAGSGKTAVMAGRIAAMLAEGVAPRSIAAVTFTELAAS 67 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV E + + LS ++ E+ ++ R L + TI Sbjct: 68 ELLSRVREFV---ADLSAGTIATELRVALPDGLTQAH----RDNLAAASAAIDEITCSTI 120 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 H FC+ +++ +P EA+I + D Q+ E L Sbjct: 121 HGFCQRLIKPYPAEADIDPGAGVMDRNQADLTFLEIVDGWLRE 163 >gi|284029231|ref|YP_003379162.1| ATP-dependent DNA helicase PcrA [Kribbella flavida DSM 17836] gi|283808524|gb|ADB30363.1| ATP-dependent DNA helicase PcrA [Kribbella flavida DSM 17836] Length = 773 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 40/163 (24%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 L+ +Q A + V A AGSGKT +L +R+ LL A +AHP ++L +T T Sbjct: 27 LLEGLNPQQRAAVVHAGKPLLVVAGAGSGKTRVLTRRIAYLLAARDAHPGSILAITFTNK 86 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM RV+E++ + L + V Sbjct: 87 AAAEMRERVVELVGPRAKL--------------------------------------MWV 108 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ C I+++ I+S F+I D+ S++L+ + Sbjct: 109 STFHSSCVRILRRDIKRFGISSTFSIYDDTDSRRLMTLVCREL 151 >gi|260462130|ref|ZP_05810374.1| UvrD/REP helicase [Mesorhizobium opportunistum WSM2075] gi|259031990|gb|EEW33257.1| UvrD/REP helicase [Mesorhizobium opportunistum WSM2075] Length = 899 Score = 131 bits (331), Expect = 7e-29, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 42/191 (21%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTK 72 D + EQ LA + T V A AG+GKT +L R+ +L PS +L +T T Sbjct: 40 DYLKGLNPEQRLAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGKAFPSQILAVTFTN 99 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + G Sbjct: 100 KAAREMKQRIGILIGEGNVE------------------------------------GMPW 123 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ ++++ A + S F I D + +LI++ + + LD+ K F Sbjct: 124 LGTFHSIGVKLLRRHAELAGLRSDFTILDTDDVVRLIKQ----LIQAEGLDDKRWPAKQF 179 Query: 193 YEILEISNDED 203 ++++ ++ Sbjct: 180 AQMIDGWKNKG 190 >gi|218289816|ref|ZP_03494016.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1] gi|218240107|gb|EED07292.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius LAA1] Length = 705 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 76/211 (36%), Gaps = 49/211 (23%) Query: 12 ETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69 + D++ EQ A + + V A AGSGKT +L +R+ L+ A +L +T Sbjct: 3 DVTDILRGLNPEQRDAVTTTSGPLLVVAGAGSGKTSVLTRRIAYLIAHAGVAVHEILAIT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ ++I Sbjct: 63 FTNKAAREMKTRIRDLIG--------------------------------------HRAD 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 L + T H+ C I+++ +F I D E + L+++ L + D Sbjct: 85 DLWMGTFHSICVRILRREADRLGYQPNFTILDSEDQESLVQQC----LLDLGYDLKAHDA 140 Query: 190 KAFYEILEISNDEDIETLI-----SDIISNR 215 ++ + +E ++ SD+I++R Sbjct: 141 RSIKHRISQWKNEGAHRVVNESNPSDLIADR 171 >gi|170695890|ref|ZP_02887030.1| UvrD/REP helicase [Burkholderia graminis C4D1M] gi|170139188|gb|EDT07376.1| UvrD/REP helicase [Burkholderia graminis C4D1M] Length = 787 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 83/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMSRLSALLPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHHRDAALPATFQILDTADQLS----AIKRLMKGLNIDDEKYPAKNL 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPKDVDATDNFNRKFVELYEAYDQQCQREGVVD 185 >gi|326336392|ref|ZP_08202563.1| ATP-dependent helicase PcrA [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691566|gb|EGD33534.1| ATP-dependent helicase PcrA [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 773 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 59/164 (35%), Gaps = 38/164 (23%) Query: 14 IDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ++ + + Q + V A AGSGKT +L R+ L+ P +L LT T Sbjct: 1 MNYLDELNEAQRAPVVHKDGAVMVIAGAGSGKTRVLTYRIAYLMQQGVDPFNILALTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ I+ S+AR+L Sbjct: 61 KAAREMKERIGRIVGQ--------------------------SEARNL-----------W 83 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I+++ F I D++ S++LI K Sbjct: 84 MGTFHSVFARILREEAYRLGFPRDFTIYDQQDSQRLISAIIKEM 127 >gi|260885683|ref|ZP_05735545.2| ATP-dependent helicase [Prevotella tannerae ATCC 51259] gi|260851937|gb|EEX71806.1| ATP-dependent helicase [Prevotella tannerae ATCC 51259] Length = 1084 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 6/178 (3%) Query: 24 QLLASDPTRSAWV-SANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEMSHR 81 + A D S + A+AGSGKT L Q L +LL +L +T T A EM R Sbjct: 18 RDAAKDMKESLIIYKASAGSGKTFTLAQNYLVQLLSKGGSHRYILAVTFTNKATTEMKQR 77 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 +L + + D + + + G+ + +A+ L IL +V TI F + Sbjct: 78 ILAYLYDLAEGRDNDFTRALAERLGQPADLK--QRAQAALDGILHDYDHFQVMTIDKFFQ 135 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 ++ E +++++ I E +K ++EA L +I +++L +++E Sbjct: 136 QLLSNLAHELGLSANYRI--ELDDRKAVDEAVDFLLDAIDERADKKLIGWIEDLIEDR 191 >gi|312279028|gb|ADQ63685.1| ATP-dependent helicase/nuclease subunit A [Streptococcus thermophilus ND03] Length = 1217 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 77/223 (34%), Gaps = 31/223 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++V+R+L ++ L T T AA E+ Sbjct: 29 TPEQIEAIYSNGTNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + +T K ++ + R L + G + T+ AF Sbjct: 89 ERLEKRLT-------------------KHLGQAKTDEERAFLSDQIAKIGTADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADE-EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-- 196 + ++ Q+ ++ F I + + + E M + +L + Sbjct: 130 TQKLVNQYGYLLGVSPTFRIMTDLAEQTLMKNEVYADLFNDYMQGKDAQLFQKLVRNFTG 189 Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + L+ DI F + K + ++L Sbjct: 190 HSKTSKAFRDLVYDI---------YSFSQATADPEKWLRQNLL 223 >gi|289641103|ref|ZP_06473271.1| ATP-dependent DNA helicase PcrA [Frankia symbiont of Datisca glomerata] gi|289509044|gb|EFD29975.1| ATP-dependent DNA helicase PcrA [Frankia symbiont of Datisca glomerata] Length = 822 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 57/165 (34%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D ++ ++ V A AGSGKT +L R+ LL A +L +T T Sbjct: 50 LLDGLN--PQQRAAVVHTGSPLLVVAGAGSGKTRVLTNRIAYLLAARGVRAGEILAITFT 107 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ A + + Sbjct: 108 NKAANEMKERVAALVGARTR--------------------------------------AM 129 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I++ TS F+I D +++LI + Sbjct: 130 WVSTFHSACVRILRSHAKRIGFTSGFSIYDAADAQRLITLVARDL 174 >gi|319902365|ref|YP_004162093.1| ATP-dependent DNA helicase PcrA [Bacteroides helcogenes P 36-108] gi|319417396|gb|ADV44507.1| ATP-dependent DNA helicase PcrA [Bacteroides helcogenes P 36-108] Length = 763 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 57/167 (34%), Gaps = 39/167 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 + I +++ + E +L +D V A AGSGKT +L ++ LL P +L LT Sbjct: 1 MPDYIQELNEGQREAVLYND--GPLLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ + +AR L Sbjct: 59 FTNKAAREMKERIAHQVGT--------------------------ERARRL--------- 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I+ T F I D SK L+ K Sbjct: 84 --WMGTFHSMFLRILHVEAPHLGFTPQFTIYDTADSKSLLRSIIKEM 128 >gi|167587403|ref|ZP_02379791.1| UvrD/REP helicase [Burkholderia ubonensis Bu] Length = 539 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P A + A AGSGKT +L+ R+ L+ A P+T+L +T T Sbjct: 3 DLLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQQGYASPATVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMMARLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHYRDAGLPQTFQILDTSDQLS----AIKRLMKGANIDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + D NR +++ + R +++ Sbjct: 141 QYFINNAKEQGLRPDKVDATDSFNRKFVEIYQAYDQQCQREGVVD 185 >gi|295132152|ref|YP_003582828.1| UvrD/REP family helicase [Zunongwangia profunda SM-A87] gi|294980167|gb|ADF50632.1| UvrD/REP family helicase [Zunongwangia profunda SM-A87] Length = 1040 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 8/175 (4%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +A+AGSGKT LV+ L LL + +L +T T A EM R++E + A++ Sbjct: 9 NASAGSGKTFTLVKSYLSLLFKSGKTDTYKNILAITFTNKAVHEMKTRIVESLYAFTKKP 68 Query: 94 DEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 S + + K+ + K+ +L I+ +V TI F +++ F + Sbjct: 69 VPESSKALLEAVAKETAHSKEEIQEKSVAILKNIIHNYAAFEVSTIDGFTHRVLRTFAKD 128 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 + +F + E + K++ EA + D + + + +D+ + Sbjct: 129 LGLPVNFEV--ELDTDKILNEAVDRLINRTGKDEKLTKVLVDFSLSKADDDKSWD 181 >gi|159185029|ref|NP_355024.2| DNA helicase II [Agrobacterium tumefaciens str. C58] gi|159140303|gb|AAK87809.2| DNA helicase II [Agrobacterium tumefaciens str. C58] Length = 824 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 43/192 (22%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D +S EQ A + V A AG+GKT +L R+ +L A+PS +L +T T Sbjct: 51 DYLSGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILATGRAYPSQILAVTFTN 110 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ G Sbjct: 111 KAAREMKERIGVLVGGAVE-------------------------------------GMPW 133 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ ++++ + S F I D + +LI++ + + LD+ K F Sbjct: 134 LGTFHSIGVKLLRRHAELIGLKSDFTILDTDDVVRLIKQ----LIQAEGLDDKRWPAKQF 189 Query: 193 YEILEISNDEDI 204 +++ ++ + Sbjct: 190 AGMIDGWKNKGL 201 >gi|239825841|ref|YP_002948465.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. WCH70] gi|239806134|gb|ACS23199.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. WCH70] Length = 732 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 54/161 (33%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L + + +Q + A AGSGKT +L R+ L+ P +L +T T A Sbjct: 9 LANLNEQQQAAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFTNKA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ + + + Sbjct: 69 AREMKERVQGLLGGAAE--------------------------------------EIWIS 90 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F+I D +++ K Sbjct: 91 TFHSMCVRILRRDIDRIGIDRNFSILDTTDQLSVLKNILKE 131 >gi|78776291|ref|YP_392606.1| UvrD/REP helicase [Sulfurimonas denitrificans DSM 1251] gi|78496831|gb|ABB43371.1| UvrD/REP helicase [Sulfurimonas denitrificans DSM 1251] Length = 903 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 11/191 (5%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 + A+AGSGKT +LV R L LL A S +L LT T AA+EM R++ + H Sbjct: 5 NLAYEASAGSGKTFMLVVRYLSLLFMGAKASRILALTFTNKAASEMQERIIATLEELEHR 64 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + +T + + + + +L L + K+ TI +F I+++F L A+ Sbjct: 65 GELDEILRVTGLSIEYL----LENRQRVLDEFLNSHT--KIMTIDSFFTKILRKFSLYAS 118 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDII 212 + F+ + KL+ L + + N +E + + + DI L+ + Sbjct: 119 LMPDFSTFSSQHELKLLS----RFLKEVSITNQKERLISLW-LSSNKRLSDIFELLDEFY 173 Query: 213 SNRTALKLIFF 223 LK I F Sbjct: 174 VKFAELKHIEF 184 >gi|329113313|ref|ZP_08242094.1| Putative DNA helicase II-like protein [Acetobacter pomorum DM001] gi|326697138|gb|EGE48798.1| Putative DNA helicase II-like protein [Acetobacter pomorum DM001] Length = 783 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 70/191 (36%), Gaps = 44/191 (23%) Query: 16 LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 +++ EQ A + T V A AG+GKT +L R +LL A P +L +T T Sbjct: 63 YLARLNPEQRAAIETTDGPLLVLAGAGTGKTRVLTTRFAHILLTGRAKPWQILTVTFTNK 122 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ + + GL + Sbjct: 123 AAREMHERIGLLLGSPAE--------------------------------------GLWL 144 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T HA C ++++ +T F I D + +L+++ +A +D Sbjct: 145 GTFHALCARMLRRHAEYVGLTQSFTILDTDDQLRLLKQ----VMAPWQIDIKRWPAPGLL 200 Query: 194 EILEISNDEDI 204 +++ D + Sbjct: 201 GVIQRWKDRGL 211 >gi|71006344|ref|XP_757838.1| hypothetical protein UM01691.1 [Ustilago maydis 521] gi|46097274|gb|EAK82507.1| hypothetical protein UM01691.1 [Ustilago maydis 521] Length = 1176 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 41/175 (23%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHT 71 L S + S+ A+ P + + A GSGKT +L RV L+L A+ P +L +T T Sbjct: 43 LESLSPSQYAAATHPPTTCLQILAGPGSGKTRVLTSRVAWLILDPANKLRPEDILVVTFT 102 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R++++I E L Sbjct: 103 NKAANEMKMRLVKLIGK-------------------------------------ERVDNL 125 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + T H+ C ++++ +++++F+I D E +K++++ K A + +N E Sbjct: 126 VIGTFHSVCARYLRKYGRLISLSNNFSIIDSEDAKRMLKSILKELKAELEKENLE 180 >gi|326804259|ref|YP_004322077.1| ATP-dependent DNA helicase PcrA [Aerococcus urinae ACS-120-V-Col10a] gi|326650562|gb|AEA00745.1| ATP-dependent DNA helicase PcrA [Aerococcus urinae ACS-120-V-Col10a] Length = 818 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 60/168 (35%), Gaps = 41/168 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLC 67 ++ ID ++ ++ + A AGSGKT +L R+ LL A P +L Sbjct: 3 HINQLIDGLN--PQQKAAVQYTEGPLLIMAGAGSGKTRVLTHRMAYLLEEKAVRPWNILA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV ++ E Sbjct: 61 ITFTNKAANEMKERVKNLVG--------------------------------------EA 82 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + V T H+ C I+++ ++ F IAD + + LI+ K Sbjct: 83 ADTMWVSTFHSMCVRILRREAEAIGLSRSFTIADPAEQQSLIKRIMKD 130 >gi|281420327|ref|ZP_06251326.1| ATP-dependent DNA helicase PcrA [Prevotella copri DSM 18205] gi|281405629|gb|EFB36309.1| ATP-dependent DNA helicase PcrA [Prevotella copri DSM 18205] Length = 836 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 38/164 (23%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL++ Q A + + V A AGSGKT +L ++ LL P +++ LT T Sbjct: 1 MDLLNDLNEAQRAAVEYIDGPSLVIAGAGSGKTRVLTYKIAYLLSQGMKPWSIMALTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +++ A+HL + Sbjct: 61 KAAREMKERIGKLVGN--------------------------DLAQHLYM---------- 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ ++F I DE S+ LI+ K Sbjct: 85 -GTFHSIFSRILRAEAEHIGFNNNFTIYDESDSRSLIKAIVKEM 127 >gi|39935284|ref|NP_947560.1| ATP-dependent exodeoxyribonuclease subunit A [Rhodopseudomonas palustris CGA009] gi|39649136|emb|CAE27656.1| possible ATP-dependent exodeoxyribonuclease (subunit A) [Rhodopseudomonas palustris CGA009] Length = 1133 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 7/171 (4%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 + + + + RS V A AGSGKT ++ R+ +L P ++ +T T+ A Sbjct: 6 NALRDDAARRTAIGVHDRSILVEAGAGSGKTAVMAGRIAAMLAEGIAPKSIAAVTFTELA 65 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+E+ RV + + + + I G PN S L + Sbjct: 66 ASELLIRVRDFVADLAAGTIPT-ELRIAFPDGLSPNHS------ANLAAAASVIDEITCS 118 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 TIH FC+ +++ +P+EA+I ++ D Q+ E ++ L + Sbjct: 119 TIHGFCQRLIKPYPVEADIDPGASVMDRNQADLAFIEIVETWLREQLSGGE 169 >gi|291461061|ref|ZP_06026707.2| ATP-dependent DNA helicase PcrA [Fusobacterium periodonticum ATCC 33693] gi|291379194|gb|EFE86712.1| ATP-dependent DNA helicase PcrA [Fusobacterium periodonticum ATCC 33693] Length = 739 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 63/168 (37%), Gaps = 41/168 (24%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66 Q + ++ +++ + E AS S + A AGSGKT + R+ ++ P ++L Sbjct: 2 QMNLNLLEKLNEKQRE--AASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSIL 59 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM RV +++ + Sbjct: 60 AVTFTNKAAKEMRERVEDLVGEVAKSC--------------------------------- 86 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + T H+F +++ + E +F I D + K++I+ K Sbjct: 87 -----TISTFHSFGMRLLRMYAAEVGYNPNFTIYDTDDQKRIIKAILK 129 >gi|254392029|ref|ZP_05007220.1| ATP-dependent DNA helicase II [Streptomyces clavuligerus ATCC 27064] gi|294814551|ref|ZP_06773194.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] gi|326442941|ref|ZP_08217675.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] gi|197705707|gb|EDY51519.1| ATP-dependent DNA helicase II [Streptomyces clavuligerus ATCC 27064] gi|294327150|gb|EFG08793.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] Length = 825 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 44/193 (22%), Positives = 71/193 (36%), Gaps = 44/193 (22%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ +Q A + A AGSGKT +L R+ LL HP +L +T T Sbjct: 70 LLEGLNEQQRAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLATRGVHPGQILAITFTNK 129 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ + + V Sbjct: 130 AAGEMKERVEQLVGPRAQ--------------------------------------AMWV 151 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ C I+++ + TS F+I D SK+L+ + + LD + K+F Sbjct: 152 LTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRD----LDLDPKKFPPKSFS 207 Query: 194 EILEISNDEDIET 206 + +E I+ Sbjct: 208 AKISNLKNELIDE 220 >gi|15895932|ref|NP_349281.1| ATP-dependent DNA helicase [Clostridium acetobutylicum ATCC 824] gi|15025705|gb|AAK80621.1|AE007765_3 ATP-dependent superfamily I DNA helicase, PCRA [Clostridium acetobutylicum ATCC 824] gi|325510084|gb|ADZ21720.1| ATP-dependent superfamily I DNA helicase, PCRA [Clostridium acetobutylicum EA 2018] Length = 756 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 39/165 (23%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL EQ A+ + A AGSGKT +L R+ ++ +PS +L +T T Sbjct: 1 MDLKKLLNEEQYKAATKIDGPILILAGAGSGKTRVLTYRIAHMVKDLEIYPSQILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +I + Sbjct: 61 NKAAKEMKDRVKALIGG-------------------------------------NEIDNM 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ + +F I D + K L+ E K Sbjct: 84 WISTFHSCCVRILRREIDKIGYNKNFTIYDSDDQKVLMRECIKQV 128 >gi|325269817|ref|ZP_08136427.1| ATP-dependent DNA helicase PcrA [Prevotella multiformis DSM 16608] gi|324987790|gb|EGC19763.1| ATP-dependent DNA helicase PcrA [Prevotella multiformis DSM 16608] Length = 843 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 78/206 (37%), Gaps = 44/206 (21%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 +L+S Q A + + V A AGSGKT +L ++ LL P +L LT T Sbjct: 9 ELLSALNESQRKAVEYCAGPSLVIAGAGSGKTRVLTYKIAYLLEKGLKPWNILALTFTNK 68 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ +I TA +AR L + Sbjct: 69 AAKEMKERIAQITTAG--------------------------EARRLYM----------- 91 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ I++ +F I DE S+ LI KS + ++ LD A + Sbjct: 92 GTFHSIFARILRSEGELIGFGHNFTIYDETDSRSLI----KSIVKALGLDEKTYKPAAVH 147 Query: 194 EILEISNDEDIETLISDIISNRTALK 219 + ++ + I S+ +R AL Sbjct: 148 NFISMAKNRLITA--SEYAEDRAALN 171 >gi|78045143|ref|YP_359945.1| ATP-dependent DNA helicase PcrA [Carboxydothermus hydrogenoformans Z-2901] gi|77997258|gb|ABB16157.1| ATP-dependent DNA helicase PcrA [Carboxydothermus hydrogenoformans Z-2901] Length = 718 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 49/226 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L + +++ + V A AG+GKT +L R+ LL A+P +L +T T A Sbjct: 5 LATLNPAQREAVTHTHGPLLVLAGAGTGKTRVLTFRIAHLLYRKMAYPHEILAITFTNKA 64 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +I+ + + + Sbjct: 65 AREMKERVERLISGSAR--------------------------------------EIWIS 86 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+F I++ + + F + DEE ++I+E L + +D+ KA Sbjct: 87 TFHSFALRILRNDIEKLGFSRDFTVYDEEDQLQVIKEC----LKELNIDDKRFAPKAIAY 142 Query: 195 ILEISND-----EDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 + + D D+ + A+ + + L + ++ Sbjct: 143 HISSAKDKLISPRQYRDDADDLFKEKVAI-IYNMYQEKLNKNNALD 187 >gi|237740038|ref|ZP_04570519.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 2_1_31] gi|229422055|gb|EEO37102.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 2_1_31] Length = 735 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 40/163 (24%) Query: 14 IDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++L+ + +Q AS S + A AGSGKT + R+ ++ P ++L +T T Sbjct: 1 MNLLEKLNEKQREAASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +++ + Sbjct: 61 NKAAKEMRERVEDLVGEVAKSC-------------------------------------- 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + T H+F +++ + E + +F I D + K++I+ K Sbjct: 83 TISTFHSFGMRLLRMYAAEVGYSPNFTIYDTDDQKRIIKAILK 125 >gi|304313385|ref|YP_003812983.1| Superfamily I DNA and RNA helicases [gamma proteobacterium HdN1] gi|301799118|emb|CBL47361.1| Superfamily I DNA and RNA helicases [gamma proteobacterium HdN1] Length = 738 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 72/199 (36%), Gaps = 45/199 (22%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPST 64 S + +D ++ + Q ++SD R V A AGSGKT +LV R+ L + P Sbjct: 4 SALTPASLLDSLNPAQR-QAVSSDANR-LLVLAGAGSGKTRVLVHRIAWLVIARGLSPRG 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AAAEM HR+ ++ Sbjct: 62 ILAVTFTNKAAAEMRHRLQTLLQIPQ---------------------------------- 87 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 G + V T H +++ EA + F + D + ++++ K + + L+ Sbjct: 88 ----GAMWVGTFHGIAHRLLRLHWQEAKLPEQFQVMDSDDQQRVL----KRVMREMQLEE 139 Query: 185 NEELKKAFYEILEISNDED 203 + + DE Sbjct: 140 ARWPVRQAQSYINSHKDEG 158 >gi|300856842|ref|YP_003781826.1| ATP-dependent DNA helicase [Clostridium ljungdahlii DSM 13528] gi|300436957|gb|ADK16724.1| ATP-dependent DNA helicase [Clostridium ljungdahlii DSM 13528] Length = 746 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 63/165 (38%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL S EQ A + A AGSGKT +L R+ ++ N +PS +L +T T Sbjct: 1 MDLKSLLNKEQYEAAVYVDGPLLILAGAGSGKTRVLTYRIAHMIKDMNIYPSKILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ E++ + G+ Sbjct: 61 NKAAGEMKDRIKELVG--------------------------------------DEVDGM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + +FAI D K LI++ K Sbjct: 83 WVSTFHSSCVRILRREIDKLGYNKNFAIYDSYDQKVLIKQCMKEL 127 >gi|56808113|ref|ZP_00365902.1| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Streptococcus pyogenes M49 591] Length = 405 Score = 131 bits (330), Expect = 8e-29, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 92/238 (38%), Gaps = 28/238 (11%) Query: 7 FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 QE+ D + ++Q+ A ++ VSA+AGSGKT ++V+R+L +L L Sbjct: 28 LQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 T T AA E+ R+ + + + + + + L L Sbjct: 88 FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184 ++ + T+ AF + ++ ++ I+S F I D+ + L +E + M Sbjct: 129 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQK 188 Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 + +A + S + + +++ F S + ++++ S A Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239 >gi|21910050|ref|NP_664318.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes MGAS315] gi|81479324|sp|Q8K815|ADDA_STRP3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|21904241|gb|AAM79121.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes MGAS315] Length = 1222 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 95/239 (39%), Gaps = 30/239 (12%) Query: 7 FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 QE+ D + ++Q+ A ++ VSA+AGSGKT ++V+R+L +L L Sbjct: 28 LQENERYSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 T T AA E+ R+ + + + + + + L L Sbjct: 88 FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184 ++ + T+ AF + ++ ++ I+S F I D+ + L +E + M Sbjct: 129 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFM--- 185 Query: 185 NEELKKAFYEIL-EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 N++ AF ++ S + + +++ F S + ++++ S A Sbjct: 186 NQKEAPAFRALVKNFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239 >gi|228474096|ref|ZP_04058837.1| ATP-dependent DNA helicase PcrA [Capnocytophaga gingivalis ATCC 33624] gi|228274610|gb|EEK13451.1| ATP-dependent DNA helicase PcrA [Capnocytophaga gingivalis ATCC 33624] Length = 772 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 38/164 (23%) Query: 14 IDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ++ +++ Q + V A AGSGKT +L R+ L+ P +L LT T Sbjct: 1 MNYLNELNEAQRAPVVHKDGAVMVIAGAGSGKTRVLTYRIAYLIQQGVDPFNILALTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ I+ S+AR+L Sbjct: 61 KAAREMKERIGRIVGP--------------------------SEARNL-----------W 83 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I+++ + F I D++ S++LI K Sbjct: 84 MGTFHSVFARILREEASKLGFPRDFTIYDQQDSQRLISAIIKEM 127 >gi|32474455|ref|NP_867449.1| ATP-dependent DNA helicase [Rhodopirellula baltica SH 1] gi|32444993|emb|CAD74995.1| ATP-dependent DNA helicase [Rhodopirellula baltica SH 1] gi|327539457|gb|EGF26072.1| ATP-dependent DNA helicase PcrA [Rhodopirellula baltica WH47] Length = 671 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 54/164 (32%), Gaps = 28/164 (17%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 T D+ + + V A AG+GKT ++ R+ L+ P +L +T T Sbjct: 3 TFDVAGLNPPQAKAVQTLSGPLLVLAGAGTGKTRVVTFRIANLIKHGVKPDRILAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV E++ + A P Sbjct: 63 KAAGEMQDRVGELLGYKNQKRKRGQKA----------------------------PPKPT 94 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T HA C I+++ + FAI D + L + Sbjct: 95 ISTFHAQCVRILREHAPAIGFPATFAIYDRSDQESLARAILREL 138 >gi|89097085|ref|ZP_01169976.1| PcrA [Bacillus sp. NRRL B-14911] gi|89088465|gb|EAR67575.1| PcrA [Bacillus sp. NRRL B-14911] Length = 746 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 45/195 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 + ++ ++ + + A+D + A AGSGKT +L R+ L++ +P +L +T Sbjct: 7 KLLNGLNAQQQNAVKATD--GPLLIMAGAGSGKTRVLTHRIGYLMVEKGVNPYNILAITF 64 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + Sbjct: 65 TNKAAREMRERIQNMMGGAA--------------------------------------DD 86 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + + T H+ C I+++ +F I D + K+ L LD + + Sbjct: 87 IWISTFHSMCVRILRRDIDRIGFNRNFTILDTTDQ----QSVIKAILKEKNLDPKKYDPR 142 Query: 191 AFYEILEISNDEDIE 205 A + + +E I+ Sbjct: 143 AILGSISSAKNELID 157 >gi|327404466|ref|YP_004345304.1| UvrD/REP helicase [Fluviicola taffensis DSM 16823] gi|327319974|gb|AEA44466.1| UvrD/REP helicase [Fluviicola taffensis DSM 16823] Length = 1049 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 12/191 (6%) Query: 28 SDPTRSAW-VSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRV 82 SD ++ V+A+AGSGKT+ LV+ LRLLL A ++ +T T A+ EM R+ Sbjct: 3 SDVSKPLLIVNASAGSGKTYNLVRNYLRLLLTEEFDRAEIGQIMAMTFTNKASIEMKSRI 62 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMS-KARHLLITILETPGGLKVQTIHAFCE 141 + + +H +E I Q + + KA+ +L IL V TI F Sbjct: 63 MSDLNKLAHGKEESRDYLIETAQFVGASPESIQKKAQIVLSKILHQYEDFNVMTIDKFNL 122 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI----LE 197 +++ F + ++ +F I ++E+A L +I N +L + LE Sbjct: 123 KLIRSFSKDLDLPDNFEI--SLDDSLVLEKAIDELLNNIDSKNQTKLYQLALNFAKSNLE 180 Query: 198 ISNDEDIETLI 208 ND +++ ++ Sbjct: 181 DENDWNLKKIL 191 >gi|307721871|ref|YP_003893011.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294] gi|306979964|gb|ADN09999.1| UvrD/REP helicase [Sulfurimonas autotrophica DSM 16294] Length = 904 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 14/175 (8%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 + A+AGSGKT +LV R L LL A PS +L LT T AA+EMS R++E + L Sbjct: 5 NLAYEASAGSGKTFMLVVRYLSLLFKGAEPSKVLALTFTNKAASEMSERIIETLED---L 61 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 +EI K G + +++ +L L K+ TI +F I+++F L A+ Sbjct: 62 DSRTELSEIAKECGMDEDDILAQRSK-ILAEFLNAHT--KIMTIDSFFTQILRKFSLYAS 118 Query: 153 ITSHFAIADEEQSKKLIEEA--------KKSTLASIMLDNNEELKKAFYEILEIS 199 + F A+ + KL+ K+STL ++ L++++ + F + + Sbjct: 119 LMPDFTTANAQHEVKLMSRFLKEVSVANKRSTLINLSLESSKRVSDIFALLDDFY 173 >gi|88855836|ref|ZP_01130499.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1] gi|88815160|gb|EAR25019.1| ATP-dependent DNA helicase II [marine actinobacterium PHSC20C1] Length = 799 Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 66/170 (38%), Gaps = 41/170 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHT 71 +D ++ + + + P S + A AGSGKT +L +R+ LL + PS +L +T T Sbjct: 23 LLDGLNPRQRQAVEYRGP--SLLIVAGAGSGKTSVLTRRIAGLLRSQEAWPSQILAITFT 80 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM RV I+ + G+ Sbjct: 81 NKAAAEMRERVAAIVGNAAE--------------------------------------GM 102 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 + T H+ C I+++ + +F I D SK L++ K A + Sbjct: 103 WISTFHSACVRILRREAEAFGFSKNFTIYDSADSKALLKRILKELDADMY 152 >gi|89901667|ref|YP_524138.1| UvrD/REP helicase [Rhodoferax ferrireducens T118] gi|89346404|gb|ABD70607.1| UvrD/REP helicase [Rhodoferax ferrireducens T118] Length = 1165 Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 88/199 (44%), Gaps = 25/199 (12%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAA 75 +A DP RS V A AG+GKT +LV R++R LL P +L +T TK AA Sbjct: 24 AIACDPRRSVAVEACAGAGKTWMLVSRIVRALLDGVDASSGELRVQPHEILAITFTKRAA 83 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD-----MSKARHLLITILETPGG 130 +EM R+ + + ++ L E+T N+ + L IL + Sbjct: 84 SEMRERLYQWLAEFAVADRATLLKELTLRGVLDKNELHPPSVLPEQLSKLYQNILRSGRQ 143 Query: 131 LKVQTIHAFCEAIMQQFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 ++V+T H++ A+++ PL + +++ + +++ K + + A+++ Sbjct: 144 VQVRTFHSWFAALLRSAPLAVLQQMELPANYQLLEDDTPAKAL--VWRRFYAALLRPKPA 201 Query: 187 ELKKAFYEILEISNDEDIE 205 ++ A E+ D E Sbjct: 202 QVGGA-----ELRGDAPDE 215 >gi|302558895|ref|ZP_07311237.1| ATP-dependent DNA helicase PcrA [Streptomyces griseoflavus Tu4000] gi|302476513|gb|EFL39606.1| ATP-dependent DNA helicase PcrA [Streptomyces griseoflavus Tu4000] Length = 825 Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 41/171 (23%) Query: 7 FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTL 65 + + ++ ++ ++ + A AGSGKT +L R+ LL + HP + Sbjct: 63 VLDAAALLEGLNDN--QRAAVVHSGSPLLIVAGAGSGKTRVLTHRIAHLLAERHVHPGQI 120 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T AA EM RV +++ + Sbjct: 121 LAITFTNKAAGEMKERVEQLVGPRA----------------------------------- 145 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ TS F+I D SK+L+ + Sbjct: 146 ---NAMWVMTFHSACVRILRRESKRLGFTSSFSIYDAADSKRLMALVCRDL 193 >gi|254464957|ref|ZP_05078368.1| UvrD/REP helicase domain protein [Rhodobacterales bacterium Y4I] gi|206685865|gb|EDZ46347.1| UvrD/REP helicase domain protein [Rhodobacterales bacterium Y4I] Length = 789 Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 72/193 (37%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ + E + D + A AG+GKT L R++ LL A P+ +L +T T Sbjct: 27 YLDSLNPAQREAVECLD--GPVLMLAGAGTGKTKALTTRIVHLLSTGRARPNEILSVTFT 84 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ G Sbjct: 85 NKAAREMKERVGALLGQAVE-------------------------------------GMP 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C ++++ A + S+F I D + +L+++ + + +D+ + Sbjct: 108 WLGTFHSICVKLLRRHAELAGLKSNFTILDTDDQIRLLKQ----LIQAAGIDDKRWPARM 163 Query: 192 FYEILEISNDEDI 204 I++ + + Sbjct: 164 LAGIIDDWKNRAL 176 >gi|27383199|ref|NP_774728.1| hypothetical protein blr8088 [Bradyrhizobium japonicum USDA 110] gi|27356373|dbj|BAC53353.1| blr8088 [Bradyrhizobium japonicum USDA 110] Length = 1099 Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 80/219 (36%), Gaps = 8/219 (3%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + +D + V A AG+GKT +L RV+ L+ + P ++ +T T+ AA Sbjct: 3 VVDDAERRRVLTDLDSTLLVEAGAGTGKTSLLAGRVVMLMASGTSPGAIVAITFTELAAG 62 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ HR+ + + +L + + + R L E L TI Sbjct: 63 ELRHRISTYL-------EALLGGAVPRELRLCLPDGPTPEQRRSLAVAAERLDELTCGTI 115 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H++C ++ + +EA I + D + + L + + + ++ Sbjct: 116 HSYCHDLLLSYSVEAGIDPGAEVLDADHADFLFDSTFDRWWRDRLDRPHAAADDPIA-VV 174 Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 N E L+ R + S L +E Sbjct: 175 ARRNPTRAEELLRSFSKFRRRYRSAKPQPSDLDPSADLE 213 >gi|225574543|ref|ZP_03783153.1| hypothetical protein RUMHYD_02620 [Blautia hydrogenotrophica DSM 10507] gi|225038230|gb|EEG48476.1| hypothetical protein RUMHYD_02620 [Blautia hydrogenotrophica DSM 10507] Length = 737 Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 56/160 (35%), Gaps = 39/160 (24%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76 + ++ + A AGSGKT +L R+ L+ +P ++ +T T AA Sbjct: 6 NLNPQQKEAVCQTEGPLLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNIMAITFTNKAAQ 65 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV +I+ S + V T Sbjct: 66 EMKERVDQIVGFGSE--------------------------------------SVWVTTF 87 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ C I++++ + F I D + K L+++ K Sbjct: 88 HSTCVRILRRYIDRIGFDNRFTIYDADDQKSLMKDICKRL 127 >gi|121595626|ref|YP_987522.1| ATP-dependent DNA helicase UvrD [Acidovorax sp. JS42] gi|120607706|gb|ABM43446.1| ATP-dependent DNA helicase UvrD [Acidovorax sp. JS42] Length = 816 Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 72/224 (32%), Gaps = 46/224 (20%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L+ EQL A P A + A AGSGKT +L R+ LL A P +L +T T Sbjct: 33 LLQNLNPEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQNGLATPGGILAVTFTNK 92 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ G+ + Sbjct: 93 AAKEMLTRLSAMLPI--------------------------------------NVRGMWI 114 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ A + F I D + A K +D K Sbjct: 115 GTFHGLCNRLLRAHHKLAGLPQAFQILDTQDQLS----AIKRLCKQFNVDEERFPPKQLA 170 Query: 194 EILEISNDEDI--ETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 + +E + + + R ++L + R +++ Sbjct: 171 YFIAGCKEEGMRPRDVPAHDADTRKKVELYQLYEEQCQREGVVD 214 >gi|329964807|ref|ZP_08301830.1| UvrD/REP helicase [Bacteroides fluxus YIT 12057] gi|328524658|gb|EGF51721.1| UvrD/REP helicase [Bacteroides fluxus YIT 12057] Length = 767 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 63/167 (37%), Gaps = 39/167 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 S+ I +++ + E +L +D + V A AGSGKT +L ++ LL P +L LT Sbjct: 1 MSDYIQELNEGQREAVLYND--GPSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ + A +ARHL Sbjct: 59 FTNKAAREMKERIARQVGA--------------------------DRARHL--------- 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I+ + TS F I D SK L+ K Sbjct: 84 --WMGTFHSMFLRILHAEAGQLGFTSQFTIYDTADSKSLLRSIIKEM 128 >gi|257784187|ref|YP_003179404.1| UvrD/REP helicase [Atopobium parvulum DSM 20469] gi|257472694|gb|ACV50813.1| UvrD/REP helicase [Atopobium parvulum DSM 20469] Length = 812 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 39/164 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 IDL ++ V A AGSGKT +L R+ ++ P +L +T T Sbjct: 3 IDLEGLNPAQHQAVMTTQGPLLVLAGAGSGKTRVLTFRIAHMIADEGVRPWQVLAITFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ ++ G+ Sbjct: 63 KAAAEMRERLEALLP--------------------------------------NNIRGMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HA C ++++ +FAI D++ SK+L++ Sbjct: 85 VCTFHAMCVRLLREDGDRLGYGPNFAIYDDDDSKRLVKAILSDL 128 >gi|154148488|ref|YP_001406940.1| ATP-dependent DNA helicase UvrD [Campylobacter hominis ATCC BAA-381] gi|153804497|gb|ABS51504.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter hominis ATCC BAA-381] Length = 923 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 15/196 (7%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 ++ R + A+AGSGKTH L +R + L+L A P+ +L +T TK AA+EM R++E Sbjct: 5 NENNRYEALQASAGSGKTHALTKRFVELMLDGALPNQILAITFTKKAASEMKSRIVE--- 61 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 A+ L + + ++ G+ + +++ L L LK+ T AF +I++ F Sbjct: 62 AFLDLENSKILHDVMNDFGESK-EQILNRRDKLKEKFLNQ--NLKIYTFDAFFSSILRAF 118 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL--EISNDEDIE 205 L ++S+F++ D S + + L+ I NE+ K F + +D + Sbjct: 119 ALNLGLSSNFSVDDSITSIQ-----NEKFLSEI--SKNEQTLKNFVRYIFERERSDTQVY 171 Query: 206 TLISDIISNRTALKLI 221 + N +LK I Sbjct: 172 DDLDKFWKNNISLKKI 187 >gi|332040845|gb|EGI77217.1| UvrD/REP helicase [Hylemonella gracilis ATCC 19624] Length = 846 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 77/232 (33%), Gaps = 50/232 (21%) Query: 10 HSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 S + L++ +EQ A P A + A AGSGKT +L R+ LL P LL Sbjct: 37 SSSDMPLLAGLNTEQRAAVTLPAEPALILAGAGSGKTRVLTTRIAWLLQTGQISPGGLLA 96 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ ++ Sbjct: 97 VTFTNKAAREMMTRLQSMLPV--------------------------------------N 118 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ + T H C +++ A + F I D + + A K +D Sbjct: 119 VRGMWIGTFHGLCNRLLRAHHKTAGLPQTFQILDTQDQ----QSAIKRLCKQFNVDEERF 174 Query: 188 LKKAFYEILEISNDEDIETLISDIISN----RTALKLIFFFFSYLWRRKIIE 235 K + ++ + D+ ++ R ++L + R +++ Sbjct: 175 PPKQLQWFIGGCKEDGLRP--GDVQAHDPDTRKKVELYQLYEEQCQREGVVD 224 >gi|312199973|ref|YP_004020034.1| ATP-dependent DNA helicase PcrA [Frankia sp. EuI1c] gi|311231309|gb|ADP84164.1| ATP-dependent DNA helicase PcrA [Frankia sp. EuI1c] Length = 834 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 78/243 (32%), Gaps = 48/243 (19%) Query: 4 HNSFQEHSETID---LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA- 58 H + S +D L++ +Q A S + A AGSGKT +L R+ LL A Sbjct: 45 HQPERRASPRLDPDALLAGLNPQQRAAVVHEGSPLLIVAGAGSGKTRVLAHRIAYLLAAR 104 Query: 59 NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118 N HP +L +T T AA EM RV ++ Sbjct: 105 NVHPGEILAITFTNKAANEMRERVGALVGGRVR--------------------------- 137 Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 + V T H+ C I++ S F+I D +++LI + Sbjct: 138 -----------AMWVSTFHSACVRILRNESKRLGFGSSFSIYDAADAQRLITLVCRDLDL 186 Query: 179 SIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 L + D + + RT ++ + R++ E + Sbjct: 187 DSKRHPARGLAAQISTLKNELVDHETAQAKASSHPERTVAEVYALYQ-----RRLREANA 241 Query: 239 WSI 241 Sbjct: 242 LDF 244 >gi|320107768|ref|YP_004183358.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4] gi|319926289|gb|ADV83364.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4] Length = 1189 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 98/225 (43%), Gaps = 19/225 (8%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSH 80 E+ A D TRS V A AGSGKT +L+QR L+LLL P+ ++ +T T A E+ + Sbjct: 10 EREQALDTTRSWIVEAPAGSGKTGLLIQRYLKLLLDPQIESPAQVIAITFTTKATEEIRN 69 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+L +++ S ++ + + + K +++ +L+ P L ++TI + Sbjct: 70 RILSALSSASQDTE----VDSFERTTRDLAKQVLARDAEHGWQLLQQPEQLNIRTIDSLA 125 Query: 141 EAIMQQFPLEAN----ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 I + P+ A + E + L A + + + + + EL +A IL Sbjct: 126 AEIARSMPVLAGGWGKLQPA------EDAWPLYARAARRVMLKLGGE-DRELHQAIETIL 178 Query: 197 --EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 +N +E LI ++ R + + +++ + Sbjct: 179 LHRDANLAGVEALICGMLQKREQWGSLIPLRGAELTDEFLDEQVL 223 >gi|170755491|ref|YP_001782895.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum B1 str. Okra] gi|169120703|gb|ACA44539.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum B1 str. Okra] Length = 738 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL ++ EQ A + A AGSGKT +L R+ ++ N +PS +L +T T Sbjct: 1 MDLKNKLNKEQYEAAITIDGPLLILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ G+ Sbjct: 61 NKAAGEMKERIKALVGDVVE--------------------------------------GM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + +F I D K L+++ + Sbjct: 83 WVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCMEEL 127 >gi|118602136|ref|YP_903351.1| UvrD/REP helicase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567075|gb|ABL01880.1| UvrD/REP helicase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 1053 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 5/205 (2%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 ++++ A D ++S V A AGSGKT +L QR L+LL +A P +++ +T TK A +E+ Sbjct: 2 NDQTQRRQALDVSQSFIVQAPAGSGKTELLTQRYLKLLSVSASPESVIAMTFTKKAVSEL 61 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + RV+E + L+ E K + K++ L +L K+ TI Sbjct: 62 TTRVIESL----KLAQGNRPKESYKQTTYDLALKVLEKSKTLDWQLLNMYERFKILTIDG 117 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I ++P + + IA + +A K TL +I + ++ L+ Sbjct: 118 LSGLIASRYPSKNQLVPKQIIAQNCVRNDIYLKAAKQTLLAIDESEYQNSIESVLLYLD- 176 Query: 199 SNDEDIETLISDIISNRTALKLIFF 223 +N LI D+++ R L + Sbjct: 177 NNVNKFYRLIIDMLAKRDQWLLKLY 201 >gi|295109226|emb|CBL23179.1| ATP-dependent DNA helicase PcrA [Ruminococcus obeum A2-162] Length = 744 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 44/189 (23%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 D ++ + E + ++ + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 5 DTLNDRQKEAVFYTE--GPLLILAGAGSGKTRVLTHRIAYLIAEKGINPWNILAITFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV I G + V Sbjct: 63 AAHEMRERVDRIAGNVGG-------------------------------------GSVWV 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ C I+++ ++F I D + K L++E + + +D + ++A Sbjct: 86 STFHSTCVRILRRHIDRLGYDNNFTIYDADDQKTLMKEICR----KMNIDTKKVKERALL 141 Query: 194 EILEISNDE 202 + + DE Sbjct: 142 AQISHAKDE 150 >gi|238917480|ref|YP_002930997.1| hypothetical protein EUBELI_01558 [Eubacterium eligens ATCC 27750] gi|238872840|gb|ACR72550.1| Hypothetical protein EUBELI_01558 [Eubacterium eligens ATCC 27750] Length = 822 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 68/190 (35%), Gaps = 43/190 (22%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 + L S++ + + A AGSGKT +L R+ L+ P ++ +T T Sbjct: 1 MRLEDLNDSQKRAVKYTDGALLIIAGAGSGKTRVLTNRIAYLIEECGVDPYNIMAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV + + G + Sbjct: 61 KAAREMKERVETTVAQGA--------------------------------------GAVW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T H+ C I++++ ++F I D + K +I++ K + +D ++A Sbjct: 83 VSTFHSTCVRILRRYIDRIGYDNNFTIYDTDDQKSVIKDICK----KMNIDTKMLKERAI 138 Query: 193 YEILEISNDE 202 + + DE Sbjct: 139 MSKISSAKDE 148 >gi|195977957|ref|YP_002123201.1| ATP-dependent nuclease subunit A AddA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|251764553|sp|B4U2H1|ADDA_STREM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|195974662|gb|ACG62188.1| ATP-dependent nuclease subunit A AddA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 1214 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 87/236 (36%), Gaps = 30/236 (12%) Query: 7 FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 Q+ D + ++Q+ A ++ VSA+AGSGKT ++V+R+L +L L Sbjct: 16 LQQEEALSDKRHKRTAQQIEAIYSSGQNILVSASAGSGKTFVMVERILDKILRGISVDRL 75 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 T T AA E+ R+ + + + + + + L L Sbjct: 76 FISTFTVKAATELIERIEKKLHTAIAETQDY-------------------QLKAYLNDQL 116 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184 + + T+ AF + ++ Q I+ HF I D+ + L E + M Sbjct: 117 QALSQADIGTMDAFAQKLVHQHGYVLGISPHFRIIQDKAEQDILKREVFRQVFEDYMSQT 176 Query: 185 NEELKKAFYEIL-EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + KAF +++ S + +I+ + + F S + + Sbjct: 177 D---NKAFIQLVQNFSGRRKDSSAFREIVDS-----IYAFSQSTANPSSWLAEVFL 224 >gi|315641090|ref|ZP_07896169.1| ATP-dependent DNA helicase PcrA [Enterococcus italicus DSM 15952] gi|315483098|gb|EFU73615.1| ATP-dependent DNA helicase PcrA [Enterococcus italicus DSM 15952] Length = 754 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 60/166 (36%), Gaps = 41/166 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E + ++ + E +LA+ + A AGSGKT +L RV L+ + +P +L +T Sbjct: 7 ELLRGMNPQQKEAVLAT--AGPLLLMAGAGSGKTRVLTHRVAYLIQEKDVNPWNILAITF 64 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ S Sbjct: 65 TNKAAREMRERIHALVGPESE--------------------------------------D 86 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T H+ C I+++ + +F I D L++ K Sbjct: 87 IWISTFHSMCVRILRREVEKIGYNRNFTILDSSDQLSLMKRMLKEL 132 >gi|221194558|ref|ZP_03567615.1| ATP-dependent DNA helicase PcrA [Atopobium rimae ATCC 49626] gi|221185462|gb|EEE17852.1| ATP-dependent DNA helicase PcrA [Atopobium rimae ATCC 49626] Length = 843 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 39/171 (22%) Query: 7 FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTL 65 F + + L +++ V A AGSGKT +L R+ ++ P + Sbjct: 10 FSANPSRLSLQDLNAAQREAVLATQGPLLVLAGAGSGKTRVLTYRIAHMIADEGVRPWQI 69 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T AAAEM R+ ++ + Sbjct: 70 LAITFTNKAAAEMRERLGTLLPGGTR---------------------------------- 95 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G+ V T HA C ++++ +F I D++ SK+L++ Sbjct: 96 ----GMWVCTFHAMCVRMLREDSEAVGFGPNFTIYDDDDSKRLVKAIMADL 142 >gi|120437697|ref|YP_863383.1| UvrD/REP family helicase [Gramella forsetii KT0803] gi|117579847|emb|CAL68316.1| UvrD/REP family helicase [Gramella forsetii KT0803] Length = 1035 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 79/175 (45%), Gaps = 8/175 (4%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +A+AGSGKT LV+ L +L ++ +L +T T A EM R++E ++ +S Sbjct: 9 NASAGSGKTFTLVKEYLIILYSSKKRDRYKNILAITFTNKAVGEMKTRIIESLSEFSKAE 68 Query: 94 DEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + + K ++ S +K+ +L +I+ ++ TI F +++ F + Sbjct: 69 VSSENNPLLKAIIEETGYSTECIRTKSAEILKSIIHNYAAFEISTIDGFTHRVLRTFARD 128 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 I +F + E + +++ EA S ++ D Y + + +D+ + Sbjct: 129 LGIPMNFEV--ELSADEILLEAVDSLISRAGSDKKLTKVLVDYTLSKTDDDKSWD 181 >gi|300870871|ref|YP_003785742.1| ATP dependent DNA helicase [Brachyspira pilosicoli 95/1000] gi|300688570|gb|ADK31241.1| ATP dependent DNA helicase [Brachyspira pilosicoli 95/1000] Length = 660 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 39/167 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 + ++ A AGSGKT ++ +R+ L+ PS +L +T T AA EM Sbjct: 3 NEEQKKAVEHINGPMLALAGAGSGKTRVITERIAYLIKNGIDPSNILAVTFTNKAANEMR 62 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ ++ E P L + T H+F Sbjct: 63 ERIASLLK--------------------------------------EKPKQLVISTFHSF 84 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNN 185 C +++ + +F+I S+ LI + + ++ D N Sbjct: 85 CVRVLKLDIDKLGYKKNFSIYSSSDSRTLIRNILREVKVNTLNYDEN 131 >gi|256420067|ref|YP_003120720.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588] gi|256034975|gb|ACU58519.1| UvrD/REP helicase [Chitinophaga pinensis DSM 2588] Length = 783 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 38/162 (23%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + + + +Q LA + + A AGSGKT +L R+ L+ +L LT T Sbjct: 4 NYLDELNEQQRLAVAHINGPLMIVAGAGSGKTKVLTTRIAHLMRNGVDAFNILSLTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +I+ ++AR+L + Sbjct: 64 AAREMKERVEKILGG--------------------------TEARNLY-----------I 86 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ +++ + F I D + +K +++ Sbjct: 87 GTFHSVFARLLRAEAHRLGYPNDFTIYDSDDAKSVLKTIINE 128 >gi|299532528|ref|ZP_07045918.1| UvrD/REP helicase [Comamonas testosteroni S44] gi|298719475|gb|EFI60442.1| UvrD/REP helicase [Comamonas testosteroni S44] Length = 827 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 76/224 (33%), Gaps = 46/224 (20%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L++ EQL A P A + A AGSGKT +L R+ LL A P +++ +T T Sbjct: 26 LLTGLNDEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQTGQATPGSIMAVTFTNK 85 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ G+ + Sbjct: 86 AAKEMLTRLSAMLPY--------------------------------------NVRGMWI 107 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ A + F I D + A K +D+ K Sbjct: 108 GTFHGLCNRLLRAHYQAAKLPQAFQILDTQDQLS----AIKRLCKQFNVDDERFPPKQLM 163 Query: 194 EILEISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIE 235 + +E + +++ R ++L + R +++ Sbjct: 164 YFIAGCKEEGMRPGDVVATDPDTRKKVELYQLYEEQCQREGVVD 207 >gi|170758795|ref|YP_001788588.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A3 str. Loch Maree] gi|169405784|gb|ACA54195.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A3 str. Loch Maree] Length = 738 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL ++ EQ A + A AGSGKT +L R+ ++ N +PS +L +T T Sbjct: 1 MDLKNKLNKEQYEAAITIDGPLLILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ G+ Sbjct: 61 NKAAGEMKERIKALVGDVVE--------------------------------------GM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + +F I D K L+++ + Sbjct: 83 WVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCMEEL 127 >gi|289705920|ref|ZP_06502298.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58] gi|289557366|gb|EFD50679.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58] Length = 962 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 56/162 (34%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L++ +Q A + + A AGSGKT +L R+ LL A P +L +T T Sbjct: 62 LVAGLNPQQAAAVTHTGAPLLIVAGAGSGKTRVLTHRIAWLLATGRARPHEILAITFTNK 121 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM RV +I T + + Sbjct: 122 AAAEMRERVAGLIGP--------------------------------------TAQRMWI 143 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ +++ + S F I D S +L+ K Sbjct: 144 STFHSSAVRLLRNEAANIGLKSTFTIYDSADSLRLVTTVAKQ 185 >gi|302553643|ref|ZP_07305985.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM 40736] gi|302471261|gb|EFL34354.1| ATP-dependent DNA helicase PcrA [Streptomyces viridochromogenes DSM 40736] Length = 826 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 41/169 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 + + ++ ++ ++ + A AGSGKT +L R+ LL + HP +L Sbjct: 65 DTAALLEGLNDN--QRAAVVHSGSPLLIVAGAGSGKTRVLTHRIAHLLAERDVHPGQILA 122 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV +++ + Sbjct: 123 ITFTNKAAGEMKERVEQLVGPRA------------------------------------- 145 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ + TS F+I D SK+L+ + Sbjct: 146 -NAMWVMTFHSACVRILRRESKKLGFTSSFSIYDAADSKRLMALVCRDL 193 >gi|168703681|ref|ZP_02735958.1| ATP-dependent DNA helicase [Gemmata obscuriglobus UQM 2246] Length = 755 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 65/176 (36%), Gaps = 45/176 (25%) Query: 10 HSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 S+ DL++ +Q A + A AGSGKT ++ +RV LL A +L + Sbjct: 1 MSDDADLLADLTPDQRAAVMHGEGPLLILAGAGSGKTRVITRRVAYLLRAGVRAHNILAI 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM +RV + L Sbjct: 61 TFTNKAAGEMKNRVEK----------------------------------------LAPG 80 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 + V T H+ +++Q+ +F I D + KL+++A L + +DN Sbjct: 81 NRVWVSTFHSLGARLLRQYAERLGFDRNFTIYDTDDRNKLVKDA----LEAAGIDN 132 >gi|238027765|ref|YP_002911996.1| Superfamily I DNA and RNA helicase [Burkholderia glumae BGR1] gi|237876959|gb|ACR29292.1| Superfamily I DNA and RNA helicase [Burkholderia glumae BGR1] Length = 789 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQ A P A + A AGSGKT +L+ R+ L+ A P T+L +T T Sbjct: 3 DLLANLNPEQYAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGYASPPTVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G+ Sbjct: 63 KAAREMLSRLSAMMPIDTR--------------------------------------GMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ +A + F I D A K + + +D+ + K Sbjct: 85 IGTFHGLCNRMLRAHYRDAGLPQTFQILDTADQLS----AIKRLMKASNIDDEKYPPKNV 140 Query: 193 YEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + ++ + + NR ++L + R +++ Sbjct: 141 QYFINNAKEQGLRPDKVEANDSFNRMFVQLYQAYDQQCQREGVVD 185 >gi|111220613|ref|YP_711407.1| ATP-dependent DNA helicase [Frankia alni ACN14a] gi|111148145|emb|CAJ59814.1| ATP-dependent DNA helicase [Frankia alni ACN14a] Length = 847 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 73/224 (32%), Gaps = 41/224 (18%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D ++ ++ V A AGSGKT +L R+ LL A P +L +T T Sbjct: 53 LLDGLN--PQQRAAVVHIGAPLLVVAGAGSGKTRVLAHRIAYLLAARGVRPGEILAITFT 110 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM RV ++ +AR + Sbjct: 111 NKAAAEMRERVGALVG---------------------------PRAR-----------AM 132 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H+ C I++ S F+I D +++LI + L Sbjct: 133 WVSTFHSACVRILRSEAKRLGYGSSFSIYDAADAQRLITLVTRDLDLDPKRHPARGLAAQ 192 Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 + D + + RT ++ + L + ++ Sbjct: 193 ISNLKNELIDWEAARDRASSHQERTLAEVYAAYQQRLAQANALD 236 >gi|254719445|ref|ZP_05181256.1| ATP-dependent DNA helicase pcrA [Brucella sp. 83/13] gi|265984450|ref|ZP_06097185.1| UvrD/REP helicase [Brucella sp. 83/13] gi|306839222|ref|ZP_07472039.1| DNA helicase II [Brucella sp. NF 2653] gi|264663042|gb|EEZ33303.1| UvrD/REP helicase [Brucella sp. 83/13] gi|306405769|gb|EFM62031.1| DNA helicase II [Brucella sp. NF 2653] Length = 858 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q+H E L ++ V A AG+GKT +L R+ +L A+PS +L Sbjct: 37 QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ ++ Sbjct: 97 AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ ++++ N+TS F I D + +LI++ + + LD+ Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175 Query: 187 ELKKAFYEILEISNDEDI 204 + F +++ ++ Sbjct: 176 WPARTFANMIDGWKNKGF 193 >gi|121608662|ref|YP_996469.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2] gi|121553302|gb|ABM57451.1| ATP-dependent DNA helicase UvrD [Verminephrobacter eiseniae EF01-2] Length = 793 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 75/229 (32%), Gaps = 46/229 (20%) Query: 11 SETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 S L+ EQL A P A + A AGSGKT +L R+ LL A P ++L + Sbjct: 12 SAASPLLVHLNPEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQNGHARPGSILAV 71 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R+ ++ Sbjct: 72 TFTNKAAKEMVARLSAMLPVHVR------------------------------------- 94 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 G+ + T H C +++ A + F I D + A K +D+ Sbjct: 95 -GMWIGTFHGLCNRLLRAHHQAAGLPQTFQILDTQDQLA----AVKRLCKQHNVDDERFA 149 Query: 189 KKAFYEILEISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIE 235 K + ++ + + + R +++ + R +++ Sbjct: 150 PKDLAHFIANCKEQGLRPNDVQGQDSNTRKKIEIYQLYEEQCQREGVVD 198 >gi|153939400|ref|YP_001392617.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum F str. Langeland] gi|152935296|gb|ABS40794.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum F str. Langeland] Length = 738 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL ++ EQ A + A AGSGKT +L R+ ++ N +PS +L +T T Sbjct: 1 MDLKNKLNKEQYEAAITIDGPLLILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ G+ Sbjct: 61 NKAAGEMKERIKALVGDVVE--------------------------------------GM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + +F I D K L+++ + Sbjct: 83 WVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCMEEL 127 >gi|187735189|ref|YP_001877301.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835] gi|187425241|gb|ACD04520.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835] Length = 669 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 54/164 (32%), Gaps = 39/164 (23%) Query: 14 IDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID + EQ A A V A AGSGKT L RV LL P +L LT T Sbjct: 20 IDYRTALNEEQYAAVSSEPGPALVIAGAGSGKTRTLTYRVAWLLDHGTDPWNILLLTFTN 79 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM+ RV +I L Sbjct: 80 KAAREMTERVRSLIP--------------------------------------LDLSRLW 101 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++Q T F I D + K +I+ KS Sbjct: 102 SGTFHSIANRILRQHAEYLGYTPAFTIMDSDDRKSMIKSVVKSL 145 >gi|50913958|ref|YP_059930.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10394] gi|81602230|sp|Q5XCW6|ADDA_STRP6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|50903032|gb|AAT86747.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10394] Length = 1222 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 92/238 (38%), Gaps = 28/238 (11%) Query: 7 FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 QE+ D + ++Q+ A ++ VSA+AGSGKT ++V+R+L +L L Sbjct: 28 LQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 T T AA E+ R+ + + + + + + L L Sbjct: 88 FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184 ++ + T+ AF + ++ ++ I+S F I D+ + L +E + M Sbjct: 129 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQK 188 Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 + +A + S + + +++ F S + ++++ S A Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239 >gi|302386124|ref|YP_003821946.1| UvrD/REP helicase [Clostridium saccharolyticum WM1] gi|302196752|gb|ADL04323.1| UvrD/REP helicase [Clostridium saccharolyticum WM1] Length = 762 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 79/227 (34%), Gaps = 50/227 (22%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 D ++ + E +L V A AGSGKT +L R+ L+ +P +L +T T Sbjct: 5 DTLNPMQKEAVL--HTEGPLLVLAGAGSGKTRVLTHRIAYLIEEKSINPWNILAITFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++ + + V Sbjct: 63 AAGEMRERVDRLVGFGA--------------------------------------DSIWV 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ C I+++ T++F I D + K L+ + L + +D +A Sbjct: 85 STFHSSCVRILRRHIESLGYTTNFTIYDSDDQKTLM----RHVLKGLDMDPKIYKDRAML 140 Query: 194 EILEISND-----EDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 + + + E+ E + ++ + + L + ++ Sbjct: 141 GFISTAKNELVTAEEFEQNAGGDFRQKKVAQIYKEYQNQLRKNNALD 187 >gi|91787605|ref|YP_548557.1| ATP-dependent DNA helicase UvrD [Polaromonas sp. JS666] gi|91696830|gb|ABE43659.1| ATP-dependent DNA helicase UvrD [Polaromonas sp. JS666] Length = 825 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 69/223 (30%), Gaps = 45/223 (20%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L + + + P A + A AGSGKT +L R+ LL P +L +T T A Sbjct: 20 LHNLNPEQHAAVTLPNEHALILAGAGSGKTRVLTTRIAWLLQTGQVSPGGILAVTFTNKA 79 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ G+ + Sbjct: 80 AKEMLARLSAMLPV--------------------------------------NVRGMWIG 101 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H C ++ AN+ F I D + A K +D+ K Sbjct: 102 TFHGLCNRFLRAHYKLANLPQSFQILDTQDQLS----AIKRLCKQFNVDDERFPPKQLAW 157 Query: 195 ILEISNDEDIETLISDIISN--RTALKLIFFFFSYLWRRKIIE 235 + ++ + + R +++ + R +++ Sbjct: 158 FIASCKEDGLRAKDVQVRDEEGRKKVEIYALYEEQCQREGVVD 200 >gi|264677052|ref|YP_003276958.1| UvrD/REP helicase [Comamonas testosteroni CNB-2] gi|262207564|gb|ACY31662.1| UvrD/REP helicase [Comamonas testosteroni CNB-2] Length = 827 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 76/224 (33%), Gaps = 46/224 (20%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L++ EQL A P A + A AGSGKT +L R+ LL A P +++ +T T Sbjct: 26 LLTGLNDEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQTGQATPGSIMAVTFTNK 85 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ G+ + Sbjct: 86 AAKEMLTRLSAMLPY--------------------------------------NVRGMWI 107 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ A + F I D + A K +D+ K Sbjct: 108 GTFHGLCNRLLRAHYQAAKLPQAFQILDTQDQLS----AIKRLCKQFNVDDERFPPKQLM 163 Query: 194 EILEISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIE 235 + +E + +++ R ++L + R +++ Sbjct: 164 YFIAGCKEEGMRPGDVVATDPDTRKKVELYQLYEEQCQREGVVD 207 >gi|226950697|ref|YP_002805788.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A2 str. Kyoto] gi|226843377|gb|ACO86043.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A2 str. Kyoto] Length = 738 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL ++ EQ A + A AGSGKT +L R+ ++ N +PS +L +T T Sbjct: 1 MDLKNKLNKEQYEAAITIDGPLLILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ G+ Sbjct: 61 NKAAGEMKERIKALVGDVVE--------------------------------------GM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + +F I D K L+++ + Sbjct: 83 WVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCMEEL 127 >gi|55823610|ref|YP_142051.1| ATP-dependent exonuclease subunit A [Streptococcus thermophilus CNRZ1066] gi|81558977|sp|Q5LY80|ADDA_STRT1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|55739595|gb|AAV63236.1| ATP-dependent exonuclease, subunit A [Streptococcus thermophilus CNRZ1066] Length = 1217 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 78/223 (34%), Gaps = 31/223 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++V+R+L ++ L T T AA E+ Sbjct: 29 TPEQIEAIYSNGTNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + +T K +++ + R L + G + T+ AF Sbjct: 89 ERLEKRLT-------------------KHLGQAETDEERAFLSDQIAKIGTADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADE-EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-- 196 + ++ Q+ ++ F I + + + E M + +L + Sbjct: 130 TQKLVNQYGYLLGVSPTFRIMTDLAEQTLMKNEVYADLFNDYMQGKDAQLFQKLVRNFTG 189 Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + L+ DI F + K + ++L Sbjct: 190 HSKTSKAFRDLVYDI---------YSFSQATADPEKWLCQNLL 223 >gi|253568515|ref|ZP_04845926.1| ATP-dependent DNA helicase [Bacteroides sp. 1_1_6] gi|251842588|gb|EES70668.1| ATP-dependent DNA helicase [Bacteroides sp. 1_1_6] Length = 788 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 56/163 (34%), Gaps = 38/163 (23%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + I + Q A + V A AGSGKT +L ++ LL P +L LT T Sbjct: 4 NYIEELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + M +AR+L + Sbjct: 64 AAREMKERIARQVG--------------------------MERARYL-----------WM 86 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ TS F I D SK LI K Sbjct: 87 GTFHSVFSRILRAEAKYIGFTSQFTIYDSADSKSLIRSIIKEM 129 >gi|288553536|ref|YP_003425471.1| ATP-dependent nuclease subunit A [Bacillus pseudofirmus OF4] gi|288544696|gb|ADC48579.1| ATP-dependent nuclease subunit A [Bacillus pseudofirmus OF4] Length = 1135 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 48/218 (22%), Positives = 89/218 (40%), Gaps = 35/218 (16%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLC 67 + K++ ++ ++A AGSGKT +L +R++ LL H + Sbjct: 1 MEFNKAQTSAITNEQSLVVIAAGAGSGKTRVLTERIMYLLEKAFHEPSSSIAATIEEVAA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T+ AA EM RV + I+ L+ A + Q + ++ Sbjct: 61 ITFTEKAAREMKDRVRKRISEKEVLAQTEAEAAFWREQKELVERAH-------------- 106 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + T H+FC+ ++ Q+ + A + I DE ++K+L + K L + Sbjct: 107 -----ISTFHSFCQQLLGQYAMAAKLPPKIRIIDEVEAKQLKRDVLKKHLQDV---EFTA 158 Query: 188 LKKAFYEILE----ISNDEDIETLISDIISNRTALKLI 221 K F+ + IS EDI IS+++ A+ + Sbjct: 159 SAKEFFSYMSKDQFISTMEDIHASISELVIGEDAVLQL 196 >gi|182419338|ref|ZP_02950590.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum 5521] gi|182376669|gb|EDT74241.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum 5521] Length = 757 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 60/166 (36%), Gaps = 40/166 (24%) Query: 13 TIDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 +DL + EQ A+ + A AGSGKT +L R+ ++ N P +L +T Sbjct: 1 MLDLKNLLNKEQYEGATTIEGQVLILAGAGSGKTRVLTHRIAHMVEDLNIAPYNILAITF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV +I + Sbjct: 61 TNKAAKEMKDRVRALIGECAE--------------------------------------N 82 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T H+ C I+++ + S F I D K L++E K+ Sbjct: 83 MWISTFHSTCVKILRREIDKIGYKSSFTIYDSSDQKTLVKECMKTV 128 >gi|55821688|ref|YP_140130.1| ATP-dependent exonuclease subunit A [Streptococcus thermophilus LMG 18311] gi|81560167|sp|Q5M2T7|ADDA_STRT2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|55737673|gb|AAV61315.1| ATP-dependent exonuclease, subunit A [Streptococcus thermophilus LMG 18311] Length = 1217 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 78/223 (34%), Gaps = 31/223 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++V+R+L ++ L T T AA E+ Sbjct: 29 TPEQIEAIYSNGTNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + +T K +++ + R L + G + T+ AF Sbjct: 89 ERLEKRLT-------------------KHLGQAETDEERAFLSDQIAKIGTADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADE-EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-- 196 + ++ Q+ ++ F I + + + E M + +L + Sbjct: 130 TQKLVNQYGYLLGVSPTFRIMTDLAEQTLMKNEVYADLFNDYMQGKDAQLFQKLVRNFTG 189 Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + L+ DI F + K + ++L Sbjct: 190 HSKTSKAFRDLVYDI---------YSFSQATADPEKWLCQNLL 223 >gi|149371101|ref|ZP_01890696.1| ATP-dependent helicase [unidentified eubacterium SCB49] gi|149355887|gb|EDM44445.1| ATP-dependent helicase [unidentified eubacterium SCB49] Length = 1056 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 12/183 (6%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLE 84 + P+ A AGSGKT+ LV+R L LL N++ LL LT T A AEM R++ Sbjct: 2 NTPSPFFIYDAAAGSGKTYSLVKRYLSTLLQQPKNSYYRQLLALTFTNKAVAEMKERIVN 61 Query: 85 IITAWSHL----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 + ++ + +I + +P +A +L +L V+TI +F Sbjct: 62 SLITFADKQVIKDPPPMFLDIAETLELEP-LVIQQRANDILTQLLHNYAAFSVETIDSFN 120 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ F + + S+F + + + L+ EA + + D + + K E Sbjct: 121 HRLIRTFSKDLKLPSNFEVMLDIDN--LLTEAVDALINKAGTD--KAITKILIEFAMEKT 176 Query: 201 DED 203 D+D Sbjct: 177 DDD 179 >gi|319939427|ref|ZP_08013787.1| ATP-dependent helicase/nuclease subunit A [Streptococcus anginosus 1_2_62CV] gi|319811413|gb|EFW07708.1| ATP-dependent helicase/nuclease subunit A [Streptococcus anginosus 1_2_62CV] Length = 1226 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 82/223 (36%), Gaps = 31/223 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++VQR++ +L L T T AA+E+ Sbjct: 29 TPEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVRIDQLFISTFTVKAASELK 88 Query: 80 HRVLEIIT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + ++ A DE L + + PN + T+ + Sbjct: 89 ERLEKELSKALKATGDEELKQHLAQQLADIPN--------------------ADIGTMDS 128 Query: 139 FCEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 F + ++ ++ + +F I + L E + + L F ++++ Sbjct: 129 FTQKVLNKYGYLLELAPNFRILQSASEQLLLQNEVFEQVFEEFYQSDQAAL---FKKLVK 185 Query: 198 ISNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 + D++ R + K+ F S +EK Sbjct: 186 NFTGQR-----KDLLGFREQIYKIYAFLQSTSSPIAWLEKDFL 223 >gi|163839113|ref|YP_001623518.1| DNA helicase II [Renibacterium salmoninarum ATCC 33209] gi|162952589|gb|ABY22104.1| DNA helicase II [Renibacterium salmoninarum ATCC 33209] Length = 797 Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 72/198 (36%), Gaps = 44/198 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 ++ +L+ EQ A S + A AGSGKT +L R+ LL AHP +L + Sbjct: 25 ADAKELLHGLNPEQEAAVTHAGSPLLIVAGAGSGKTRVLSHRIAYLLATGRAHPGQILAI 84 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AAAEM R+ +I + Sbjct: 85 TFTNKAAAEMRERIAALIGDAAK------------------------------------- 107 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + + T H+ C I+++ + S F+I D S +LI + + LD Sbjct: 108 -NMWISTFHSSCVRILRREASTVGLNSSFSIYDSADSLRLITLIAR----GLDLDPKRFA 162 Query: 189 KKAFYEILEISNDEDIET 206 KA + +E I+ Sbjct: 163 PKAMQHKISALKNELIDD 180 >gi|312127653|ref|YP_003992527.1| uvrd/rep helicase [Caldicellulosiruptor hydrothermalis 108] gi|311777672|gb|ADQ07158.1| UvrD/REP helicase [Caldicellulosiruptor hydrothermalis 108] Length = 714 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 39/165 (23%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ + + +Q A V A AGSGKT ++ R+ +L A+P +L +T T Sbjct: 1 MEWLKELNEQQKEAVLSTEGPLLVLAGAGSGKTRVITYRIAYILNMGLANPGNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +++ ++ + Sbjct: 61 NKAADEMKERIKRLVST-------------------------------------QSFSEM 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HA C I++ +++F I D + ++L++E Sbjct: 84 WVSTFHAACARILRMEAHNIGFSNNFVIFDTQDRQQLLKECFDRL 128 >gi|34495660|ref|NP_899875.1| DNA helicase II [Chromobacterium violaceum ATCC 12472] gi|34101515|gb|AAQ57884.1| DNA helicase II [Chromobacterium violaceum ATCC 12472] Length = 713 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 69/194 (35%), Gaps = 44/194 (22%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL++ EQL A P +SA V A AGSGKT +L R+ LL P+ +L +T T Sbjct: 3 DLLAGLNPEQLRAVTWPAKSALVLAGAGSGKTRVLTTRIAWLLSTGQTSPAGVLAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + Sbjct: 63 KAAREMQTRLSALVPV--------------------------------------NVRNMW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C ++ +A + F I D + A K L S+ L + + +A Sbjct: 85 IGTFHGLCNRFLRIHYRDAGLPQTFQILDSADQ----QAAIKRLLKSLELSDEKYPPRAV 140 Query: 193 YEILEISNDEDIET 206 + + + + Sbjct: 141 QSFINGNKEAGLRA 154 >gi|237785085|ref|YP_002905790.1| putative ATP-dependent DNA helicase II [Corynebacterium kroppenstedtii DSM 44385] gi|237757997|gb|ACR17247.1| putative ATP-dependent DNA helicase II [Corynebacterium kroppenstedtii DSM 44385] Length = 870 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 79/217 (36%), Gaps = 53/217 (24%) Query: 16 LISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ +Q A + S V A AGSGKT +L +R+ L+ + P ++ +T T Sbjct: 20 LLEGLNPQQRQAVEHEGSPLLVVAGAGSGKTAVLTRRIAYLIGVRGVAPWNIVAITFTNK 79 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++I + + V Sbjct: 80 AATEMKERVADLIGPIAE--------------------------------------RMWV 101 Query: 134 QTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKL-----------IEEAKKSTLASIM 181 T H+ C I++ + ++F I D + S++L ++ T+AS + Sbjct: 102 STFHSMCVRILRAQANLIPGLNTNFTIYDSDDSRRLLTMIARDMNLDLKRFASRTVASAI 161 Query: 182 LDNNEELKKAFYEILEISNDED-IETLISDIISNRTA 217 + EL+ + + D++ ++ I + Sbjct: 162 SNLKNELRTPDEALADAEEDKNPFNETVAQIFAEYQK 198 >gi|196231880|ref|ZP_03130736.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428] gi|196224002|gb|EDY18516.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428] Length = 666 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 57/161 (35%), Gaps = 39/161 (24%) Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID ++ +Q A + P A V A AGSGKT L RV LL P +L LT T Sbjct: 18 IDFAAELNPQQHEAVTAPPGPALVIAGAGSGKTRTLTFRVAYLLENGVLPQNILLLTFTN 77 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ GL Sbjct: 78 KAAREMLDRVANLLP--------------------------------------NDISGLW 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T H+ ++++ P A F+I D E + +++ Sbjct: 100 GGTFHSVGNRLLRRHPEAAGFAPGFSIMDREDQQDMLDSVI 140 >gi|23502284|ref|NP_698411.1| DNA helicase II [Brucella suis 1330] gi|161619361|ref|YP_001593248.1| ATP-dependent DNA helicase pcrA [Brucella canis ATCC 23365] gi|254704671|ref|ZP_05166499.1| ATP-dependent DNA helicase pcrA [Brucella suis bv. 3 str. 686] gi|260566081|ref|ZP_05836551.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40] gi|261755364|ref|ZP_05999073.1| UvrD/REP helicase [Brucella suis bv. 3 str. 686] gi|23348259|gb|AAN30326.1| DNA helicase II [Brucella suis 1330] gi|161336172|gb|ABX62477.1| ATP-dependent DNA helicase pcrA [Brucella canis ATCC 23365] gi|260155599|gb|EEW90679.1| UvrD/REP helicase [Brucella suis bv. 4 str. 40] gi|261745117|gb|EEY33043.1| UvrD/REP helicase [Brucella suis bv. 3 str. 686] Length = 858 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q+H E L ++ V A AG+GKT +L R+ +L A+PS +L Sbjct: 37 QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ ++ Sbjct: 97 AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ ++++ N+TS F I D + +LI++ + + LD+ Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175 Query: 187 ELKKAFYEILEISNDEDI 204 + F +++ ++ Sbjct: 176 WPARTFANMIDGWKNKGF 193 >gi|148381216|ref|YP_001255757.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC 3502] gi|153933103|ref|YP_001385591.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC 19397] gi|153936248|ref|YP_001388997.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. Hall] gi|168179081|ref|ZP_02613745.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum NCTC 2916] gi|148290700|emb|CAL84830.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502] gi|152929147|gb|ABS34647.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC 19397] gi|152932162|gb|ABS37661.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. Hall] gi|182670183|gb|EDT82159.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum NCTC 2916] Length = 738 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL ++ EQ A + A AGSGKT +L R+ ++ N +PS +L +T T Sbjct: 1 MDLKNKLNKEQYEAAITIDGPLLILAGAGSGKTRVLTYRIAHMIENLNIYPSKILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ G+ Sbjct: 61 NKAAGEMKERIKALVGDVVE--------------------------------------GM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + +F I D K L+++ + Sbjct: 83 WVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCMEEL 127 >gi|221068754|ref|ZP_03544859.1| UvrD/REP helicase [Comamonas testosteroni KF-1] gi|220713777|gb|EED69145.1| UvrD/REP helicase [Comamonas testosteroni KF-1] Length = 827 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 76/224 (33%), Gaps = 46/224 (20%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L++ EQL A P A + A AGSGKT +L R+ LL A P +++ +T T Sbjct: 26 LLTGLNDEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQTGQATPGSIMAVTFTNK 85 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ G+ + Sbjct: 86 AAKEMLTRLSAMLPY--------------------------------------NVRGMWI 107 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ A + F I D + A K +D+ K Sbjct: 108 GTFHGLCNRLLRAHYQAARLPQAFQILDTQDQLS----AIKRLCKQFNVDDERFPPKQLM 163 Query: 194 EILEISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIE 235 + +E + +++ R ++L + R +++ Sbjct: 164 YFIAGCKEEGMRPGDVVATDPDTRKKVELYQLYEEQCQREGVVD 207 >gi|116510847|ref|YP_808063.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactococcus lactis subsp. cremoris SK11] gi|123025697|sp|Q033I1|ADDA_LACLS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116106501|gb|ABJ71641.1| DNA helicase/exodeoxyribonuclease V, subunit A [Lactococcus lactis subsp. cremoris SK11] Length = 1203 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 80/230 (34%), Gaps = 35/230 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + T + ++ VSA+AGSGKT ++ QR++ + L T TK AA+ Sbjct: 4 VKLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAAS 63 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R+ + S + A H L L + T+ Sbjct: 64 ELRMRLERDLKKARQESSDDEEA-------------------HRLTLALHNLSNADIGTM 104 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 +F + + + NI +F I ++ LI + L L +E L Sbjct: 105 DSFTQKLTKANFNRVNIDPNFRILADQTESDLIRQEVFEQLVESYLSADESLN------- 157 Query: 197 EISNDEDIETLISDIISNRTAL---KLIFFFFSYL----WRRKIIEKSLW 239 + + E LI + +R L K+++ + + +E Sbjct: 158 --ISKDKFEKLIKNFSKDRNILGFQKVVYTIYRFASATENPISWLENQFL 205 >gi|158334598|ref|YP_001515770.1| ATP-dependent DNA helicase PcrA [Acaryochloris marina MBIC11017] gi|158304839|gb|ABW26456.1| ATP-dependent DNA helicase PcrA [Acaryochloris marina MBIC11017] Length = 780 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 74/176 (42%), Gaps = 17/176 (9%) Query: 10 HSETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 S D +S Q A + V A AGSGKT L R+ L++ + +P +L Sbjct: 1 MSAIPDFLSHLNPSQRQAVEHFCGPLLVVAGAGSGKTRALTYRISNLVMRHQVNPENILA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ ++ D + E+ Q + +K R + + Sbjct: 61 VTFTNKAAREMKERIEKLFAEQLAQQDHGKALELLAPQQQ-------TKLRSQVYKTITK 113 Query: 128 PGGLKVQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAKKSTL 177 P L + T H+ C +++ ++ E +F+I DE + LI++ + L Sbjct: 114 P--LWIGTFHSLCARLLRMEIEKYQDEKGRKWQRNFSIFDESDVQSLIKDIVVNQL 167 >gi|254702135|ref|ZP_05163963.1| ATP-dependent DNA helicase pcrA [Brucella suis bv. 5 str. 513] gi|261752704|ref|ZP_05996413.1| UvrD/REP helicase [Brucella suis bv. 5 str. 513] gi|261742457|gb|EEY30383.1| UvrD/REP helicase [Brucella suis bv. 5 str. 513] Length = 858 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q+H E L ++ V A AG+GKT +L R+ +L A+PS +L Sbjct: 37 QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ ++ Sbjct: 97 AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ ++++ N+TS F I D + +LI++ + + LD+ Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175 Query: 187 ELKKAFYEILEISNDEDI 204 + F +++ ++ Sbjct: 176 WPARTFANMIDGWKNKGF 193 >gi|168177782|ref|ZP_02612446.1| recombination helicase AddA [Clostridium botulinum NCTC 2916] gi|182671018|gb|EDT82992.1| recombination helicase AddA [Clostridium botulinum NCTC 2916] Length = 1279 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 80/224 (35%), Gaps = 35/224 (15%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTH 70 + T + + V+A AG+GKT +LVQR++ +L P LL +T Sbjct: 1 MSGTKWTDEQSQAIFTKDCNLLVAAGAGAGKTAVLVQRIIEKILDKEEPIDIDKLLVVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAAEM R+ + I+ K + P + K LL Sbjct: 61 TNAAAAEMRERIGDAIS---------------KGLDEDPESKVLRKQLTLL-------NK 98 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + TIH+FC +++ I +F I DE + + +EA + NE+ Sbjct: 99 SNIMTIHSFCLQVIKNNLHTMEIDPNFRICDETEGILMKQEAIDELFDELYEIENEDFIN 158 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 DI L+L F S + + Sbjct: 159 LVESYASRK----------DIRLQEVVLELHRFAKSAPFPYTWL 192 >gi|163843668|ref|YP_001628072.1| ATP-dependent DNA helicase pcrA [Brucella suis ATCC 23445] gi|163674391|gb|ABY38502.1| ATP-dependent DNA helicase pcrA [Brucella suis ATCC 23445] Length = 858 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q+H E L ++ V A AG+GKT +L R+ +L A+PS +L Sbjct: 37 QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ ++ Sbjct: 97 AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ ++++ N+TS F I D + +LI++ + + LD+ Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175 Query: 187 ELKKAFYEILEISNDEDI 204 + F +++ ++ Sbjct: 176 WPARTFANMIDGWKNKGF 193 >gi|306827618|ref|ZP_07460898.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes ATCC 10782] gi|304430181|gb|EFM33210.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes ATCC 10782] Length = 1222 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 92/238 (38%), Gaps = 28/238 (11%) Query: 7 FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 QE+ D + ++Q+ A ++ VSA+AGSGKT ++V+R+L +L L Sbjct: 28 LQENERCSDQSQKRTAQQIEAIYTSGQNVLVSASAGSGKTFVMVERILDKILRGVSIDRL 87 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 T T AA E+ R+ + + + + + + L L Sbjct: 88 FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184 ++ + T+ AF + ++ ++ I+S F I D+ + L +E + M Sbjct: 129 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQK 188 Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 + +A + S + + +++ F S + ++++ S A Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239 >gi|254689608|ref|ZP_05152862.1| DNA helicase II [Brucella abortus bv. 6 str. 870] gi|254694098|ref|ZP_05155926.1| DNA helicase II [Brucella abortus bv. 3 str. Tulya] gi|256257857|ref|ZP_05463393.1| DNA helicase II [Brucella abortus bv. 9 str. C68] gi|260755135|ref|ZP_05867483.1| UvrD/REP helicase [Brucella abortus bv. 6 str. 870] gi|260884147|ref|ZP_05895761.1| UvrD/REP helicase [Brucella abortus bv. 9 str. C68] gi|261214396|ref|ZP_05928677.1| UvrD/REP helicase [Brucella abortus bv. 3 str. Tulya] gi|297248693|ref|ZP_06932411.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella abortus bv. 5 str. B3196] gi|260675243|gb|EEX62064.1| UvrD/REP helicase [Brucella abortus bv. 6 str. 870] gi|260873675|gb|EEX80744.1| UvrD/REP helicase [Brucella abortus bv. 9 str. C68] gi|260916003|gb|EEX82864.1| UvrD/REP helicase [Brucella abortus bv. 3 str. Tulya] gi|297175862|gb|EFH35209.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella abortus bv. 5 str. B3196] Length = 858 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q+H E L ++ V A AG+GKT +L R+ +L A+PS +L Sbjct: 37 QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ ++ Sbjct: 97 AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ ++++ N+TS F I D + +LI++ + + LD+ Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175 Query: 187 ELKKAFYEILEISNDEDI 204 + F +++ ++ Sbjct: 176 WPARTFANMIDGWKNKGF 193 >gi|125718261|ref|YP_001035394.1| exonuclease RexA, putative [Streptococcus sanguinis SK36] gi|251764569|sp|A3CNT9|ADDA_STRSV RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|125498178|gb|ABN44844.1| Exonuclease RexA, putative [Streptococcus sanguinis SK36] Length = 1224 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + R+ VSA+AGSGKT ++VQR++ +L S L T T AA E+ Sbjct: 29 TAEQIEAIYSSGRNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R + K G+ +++ + + L L + T+ +F Sbjct: 89 ER-------------------LEKELGQALKEAESPELKQHLAQQLADLPNADIGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ ++ + +F I + L E + E + F +++ Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDHYY---DSERQALFSRLVKN 186 Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 + D+ + R + ++ F S ++ +E++ Sbjct: 187 FTGKR-----KDLSAFREQVYRIYSFLQSTSSPQRWLEETFL 223 >gi|294782871|ref|ZP_06748197.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 1_1_41FAA] gi|294481512|gb|EFG29287.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 1_1_41FAA] Length = 737 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 40/163 (24%) Query: 14 IDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++L+ + +Q AS S + A AGSGKT + R+ ++ P ++L +T T Sbjct: 3 LNLLEKLNEKQREAASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVTFT 62 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +++ + Sbjct: 63 NKAAKEMRERVEDLVGEVAKSC-------------------------------------- 84 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + T H+F +++ + E +F I D + +++I+ K Sbjct: 85 TISTFHSFGMRLLRMYAAEVGYNPNFTIYDTDDQRRIIKAILK 127 >gi|293401242|ref|ZP_06645386.1| ATP-dependent helicase PcrA [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305368|gb|EFE46613.1| ATP-dependent helicase PcrA [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 759 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + + +Q+ A + + A AGSGKT ++ R+ L+ +P+ +L +T T Sbjct: 1 MSFLEHLNKQQVEAVHTVDQHLRIIAGAGSGKTRVVTTRIAYLIEEMQVYPNKILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ + + Sbjct: 61 NKAAKEMKERVEGMLGEVAK--------------------------------------AV 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 ++ TIH+FC ++++ LE +F I D + K ++ +A K Sbjct: 83 QISTIHSFCVRLLREDILEVGYPRNFTILDSDDQKSILRDAYKQM 127 >gi|225627865|ref|ZP_03785902.1| DNA helicase II [Brucella ceti str. Cudo] gi|254710455|ref|ZP_05172266.1| ATP-dependent DNA helicase pcrA [Brucella pinnipedialis B2/94] gi|254714448|ref|ZP_05176259.1| ATP-dependent DNA helicase pcrA [Brucella ceti M644/93/1] gi|254717346|ref|ZP_05179157.1| ATP-dependent DNA helicase pcrA [Brucella ceti M13/05/1] gi|256031949|ref|ZP_05445563.1| ATP-dependent DNA helicase pcrA [Brucella pinnipedialis M292/94/1] gi|256061471|ref|ZP_05451615.1| ATP-dependent DNA helicase pcrA [Brucella neotomae 5K33] gi|256160148|ref|ZP_05457842.1| ATP-dependent DNA helicase pcrA [Brucella ceti M490/95/1] gi|256255354|ref|ZP_05460890.1| ATP-dependent DNA helicase pcrA [Brucella ceti B1/94] gi|260169086|ref|ZP_05755897.1| ATP-dependent DNA helicase pcrA [Brucella sp. F5/99] gi|261219176|ref|ZP_05933457.1| UvrD/REP helicase [Brucella ceti M13/05/1] gi|261222555|ref|ZP_05936836.1| UvrD/REP helicase [Brucella ceti B1/94] gi|261318026|ref|ZP_05957223.1| UvrD/REP helicase [Brucella pinnipedialis B2/94] gi|261322237|ref|ZP_05961434.1| UvrD/REP helicase [Brucella ceti M644/93/1] gi|261325477|ref|ZP_05964674.1| UvrD/REP helicase [Brucella neotomae 5K33] gi|261758591|ref|ZP_06002300.1| UvrD/REP helicase [Brucella sp. F5/99] gi|265989057|ref|ZP_06101614.1| UvrD/REP helicase [Brucella pinnipedialis M292/94/1] gi|265998520|ref|ZP_06111077.1| UvrD/REP helicase [Brucella ceti M490/95/1] gi|294852740|ref|ZP_06793413.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella sp. NVSL 07-0026] gi|225617870|gb|EEH14915.1| DNA helicase II [Brucella ceti str. Cudo] gi|260921139|gb|EEX87792.1| UvrD/REP helicase [Brucella ceti B1/94] gi|260924265|gb|EEX90833.1| UvrD/REP helicase [Brucella ceti M13/05/1] gi|261294927|gb|EEX98423.1| UvrD/REP helicase [Brucella ceti M644/93/1] gi|261297249|gb|EEY00746.1| UvrD/REP helicase [Brucella pinnipedialis B2/94] gi|261301457|gb|EEY04954.1| UvrD/REP helicase [Brucella neotomae 5K33] gi|261738575|gb|EEY26571.1| UvrD/REP helicase [Brucella sp. F5/99] gi|262553144|gb|EEZ08978.1| UvrD/REP helicase [Brucella ceti M490/95/1] gi|264661254|gb|EEZ31515.1| UvrD/REP helicase [Brucella pinnipedialis M292/94/1] gi|294821329|gb|EFG38328.1| DNA helicase II/ATP-dependent DNA helicase PcrA [Brucella sp. NVSL 07-0026] Length = 858 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q+H E L ++ V A AG+GKT +L R+ +L A+PS +L Sbjct: 37 QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ ++ Sbjct: 97 AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ ++++ N+TS F I D + +LI++ + + LD+ Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175 Query: 187 ELKKAFYEILEISNDEDI 204 + F +++ ++ Sbjct: 176 WPARTFANMIDGWKNKGF 193 >gi|114565925|ref|YP_753079.1| superfamily I DNA/RNA helicase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336860|gb|ABI67708.1| ATP-dependent DNA helicase PcrA [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 696 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 69/181 (38%), Gaps = 42/181 (23%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 ++ + +Q A + V A AGSGKT +L +R++ L+ P ++ +T T Sbjct: 3 NIFADLNEQQKEAVAHVDGPCMVLAGAGSGKTRVLTRRIVHLVKQGIPPHRIMAITFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV+ ++ ++ + Sbjct: 63 AAQEMRSRVISMLPDFNSQ---------------------------------------WI 83 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 QT H+ C I++ E +F+I D+ ++K LI+ + + EEL F Sbjct: 84 QTFHSTCNRILRMDIQELGFDKYFSIIDDTEAKSLIKTLLRE--ENDYETKAEELLYIFK 141 Query: 194 E 194 + Sbjct: 142 Q 142 >gi|319952833|ref|YP_004164100.1| uvrd/rep helicase [Cellulophaga algicola DSM 14237] gi|319421493|gb|ADV48602.1| UvrD/REP helicase [Cellulophaga algicola DSM 14237] Length = 1041 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 78/175 (44%), Gaps = 8/175 (4%) Query: 37 SANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +A+AGSGKT+ L + L+++L++A + +L +T T A AEM R+++ + + + Sbjct: 10 NASAGSGKTYTLTKSYLKIILSSATSANYREILAITFTNKAVAEMKERIIDSLYDFGKVK 69 Query: 94 --DEILSAEITKIQGKKPNKSDMS-KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 D S + ++ + + +A+ L IL V TI F +++ F + Sbjct: 70 TADHAPSMFLDLVKELHIDVETLQKRAKTRLKEILHNYAFFDVSTIDKFTHRLIRTFAKD 129 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 + +F + + L+ EA + ++ + + + + D+ + Sbjct: 130 LKLPQNFEVI--LDTNLLLSEAVDRLVNKAGVEPELTKVLIAFALEKANEDKSWD 182 >gi|62290306|ref|YP_222099.1| DNA helicase II [Brucella abortus bv. 1 str. 9-941] gi|82700230|ref|YP_414804.1| UvrD/REP helicase [Brucella melitensis biovar Abortus 2308] gi|189024540|ref|YP_001935308.1| UvrD/REP helicase [Brucella abortus S19] gi|237815813|ref|ZP_04594810.1| DNA helicase II [Brucella abortus str. 2308 A] gi|254730639|ref|ZP_05189217.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292] gi|260546849|ref|ZP_05822588.1| UvrD/REP helicase [Brucella abortus NCTC 8038] gi|260758354|ref|ZP_05870702.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292] gi|62196438|gb|AAX74738.1| DNA helicase II [Brucella abortus bv. 1 str. 9-941] gi|82616331|emb|CAJ11388.1| UvrD/REP helicase:ATP/GTP-binding site motif A (P-loop) [Brucella melitensis biovar Abortus 2308] gi|189020112|gb|ACD72834.1| UvrD/REP helicase [Brucella abortus S19] gi|237789111|gb|EEP63322.1| DNA helicase II [Brucella abortus str. 2308 A] gi|260095899|gb|EEW79776.1| UvrD/REP helicase [Brucella abortus NCTC 8038] gi|260668672|gb|EEX55612.1| UvrD/REP helicase [Brucella abortus bv. 4 str. 292] Length = 858 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q+H E L ++ V A AG+GKT +L R+ +L A+PS +L Sbjct: 37 QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ ++ Sbjct: 97 AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ ++++ N+TS F I D + +LI++ + + LD+ Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175 Query: 187 ELKKAFYEILEISNDEDI 204 + F +++ ++ Sbjct: 176 WPARTFANMIDGWKNKGF 193 >gi|238855395|ref|ZP_04645706.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 269-3] gi|260665364|ref|ZP_05866212.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii SJ-7A-US] gi|282932094|ref|ZP_06337551.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1] gi|313473070|ref|ZP_07813554.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 1153] gi|238831993|gb|EEQ24319.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 269-3] gi|239528703|gb|EEQ67704.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 1153] gi|260560868|gb|EEX26844.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii SJ-7A-US] gi|281303773|gb|EFA95918.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1] Length = 754 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 41/211 (19%), Positives = 72/211 (34%), Gaps = 53/211 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q V A AGSGKT +L +R+ L+ P +L +T T AA EM Sbjct: 11 NPQQQEAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEEKGVAPWNILAITFTNKAATEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + + T HA Sbjct: 71 KERVQKLLGPAGQ--------------------------------------DVWMSTFHA 92 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST------------LASIMLDNNE 186 C I+++ + + +F+IAD + LI+ +K L++I N+ Sbjct: 93 LCVRILRRDADKIGYSRNFSIADSSEQVTLIKHIEKDLNINPKQYNPRAILSAISNAKND 152 Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTA 217 L + S + + ++S+I Sbjct: 153 LLNP--KDFEAASGNRPFDQIVSEIYKEYQK 181 >gi|325830815|ref|ZP_08164199.1| UvrD/REP helicase [Eggerthella sp. HGA1] gi|325487222|gb|EGC89665.1| UvrD/REP helicase [Eggerthella sp. HGA1] Length = 1231 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 70/188 (37%), Gaps = 39/188 (20%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCL 68 ++L + T ++ VSA AGSGKT L QR+ LL + P +L + Sbjct: 1 MNLSTCTPGQRQSIEHVRGPLLVSAGAGSGKTFTLTQRIAYALLPESGPAASGVDEVLAI 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T+ AAAE+ RV + +A L L Sbjct: 61 TFTEKAAAEIKARVKRTL-----------------------------RAEGLAEEALRV- 90 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 G + TIH C I++ L+ + F I + + EA + + D+N+ + Sbjct: 91 DGAWISTIHGMCARILRAHALDLGLDPAFGIMGDAE----RAEAVADAIDGALGDDNDII 146 Query: 189 KKAFYEIL 196 + Y L Sbjct: 147 ARGSYAAL 154 >gi|209559149|ref|YP_002285621.1| Putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes NZ131] gi|251764566|sp|B5XKR4|ADDA_STRPZ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|209540350|gb|ACI60926.1| Putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes NZ131] Length = 1222 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 92/238 (38%), Gaps = 28/238 (11%) Query: 7 FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 QE+ D + ++Q+ A ++ VSA+AGSGKT ++V+R+L +L L Sbjct: 28 LQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 T T AA E+ R+ + + + + + + L L Sbjct: 88 FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184 ++ + T+ AF + ++ ++ I+S F I D+ + L +E + M Sbjct: 129 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQK 188 Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 + +A + S + + +++ F S + ++++ S A Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239 >gi|19745861|ref|NP_606997.1| putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes MGAS8232] gi|81632923|sp|Q8P1J2|ADDA_STRP8 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|19748011|gb|AAL97496.1| putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes MGAS8232] Length = 1222 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 92/238 (38%), Gaps = 28/238 (11%) Query: 7 FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 QE+ D + ++Q+ A ++ VSA+AGSGKT ++V+R+L +L L Sbjct: 28 LQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 T T AA E+ R+ + + + + + + L L Sbjct: 88 FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184 ++ + T+ AF + ++ ++ I+S F I D+ + L +E + M Sbjct: 129 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFSEFMNQK 188 Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 + +A + S + + +++ F S + ++++ S A Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239 >gi|325262187|ref|ZP_08128925.1| ATP-dependent DNA helicase PcrA [Clostridium sp. D5] gi|324033641|gb|EGB94918.1| ATP-dependent DNA helicase PcrA [Clostridium sp. D5] Length = 741 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 41/161 (25%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 D ++ + E + + + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 5 DTLNDEQREAVYCT--NGPLLILAGAGSGKTRVLTHRIAYLIEEKGVNPWNILAITFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++ S + V Sbjct: 63 AAGEMRERVDNLVGFGSE--------------------------------------SIWV 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 T H+ C I+++ ++F I D + K L+++ K Sbjct: 85 STFHSTCVRILRRHIDRLGYDNNFTIYDADDQKTLMKDVCK 125 >gi|254423127|ref|ZP_05036845.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. PCC 7335] gi|196190616|gb|EDX85580.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. PCC 7335] Length = 784 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 87/201 (43%), Gaps = 22/201 (10%) Query: 13 TIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70 T+D ++Q Q + + V A AGSGKT L R+ L+L + P +L +T Sbjct: 4 TVDFLNQLNPAQRQSVEHFCGPLLVVAGAGSGKTRALTYRIANLILNHRVDPENILAVTF 63 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ L A K P + + ++ T ++ G Sbjct: 64 TNKAAREMKERIEKLFAEQESL------ARHGKPFHMLPEREQIQLRSYIYKTFIK---G 114 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSH-------FAIADEEQSKKLIEEAKKSTLASIMLD 183 L V T HA C I++ + +E ++ F+I DE ++ L++ ++ + LD Sbjct: 115 LWVGTFHALCARILR-YDIEKYQSADGQRWTKSFSIFDESDAQSLVKSI---VISGLNLD 170 Query: 184 NNEELKKAFYEILEISNDEDI 204 + + ++ + + ++ Sbjct: 171 DRKFNPRSVRFAISNAKNQGF 191 >gi|312793467|ref|YP_004026390.1| uvrd/rep helicase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180607|gb|ADQ40777.1| UvrD/REP helicase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 714 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 39/165 (23%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ + + +Q A V A AGSGKT ++ R+ +L A+P +L +T T Sbjct: 1 MEWLKELNEQQKEAVLSTEGPLLVLAGAGSGKTRVITYRIAYILNMGLANPGNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +++ ++ + Sbjct: 61 NKAADEMKERIKRLVST-------------------------------------QSFSEM 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HA C I++ +++F I D + ++L++E Sbjct: 84 WVSTFHAACARILRMEAHNIGFSNNFVIFDTQDRQQLLKECFDRL 128 >gi|255009480|ref|ZP_05281606.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12] gi|313147251|ref|ZP_07809444.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12] gi|313136018|gb|EFR53378.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12] Length = 786 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 56/163 (34%), Gaps = 38/163 (23%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 D I + Q A + V A AGSGKT +L ++ LL +P +L LT T Sbjct: 3 DYIEELNESQRAAVLYGDGPSLVIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + +AR+L + Sbjct: 63 AAREMKERIARQVGE--------------------------QRARYL-----------WM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ TS F I D SK L+ K Sbjct: 86 GTFHSVFSRILRAEASHIGFTSQFTIYDSADSKSLLRSIIKEM 128 >gi|253565788|ref|ZP_04843243.1| ATP-dependent DNA helicase [Bacteroides sp. 3_2_5] gi|251946067|gb|EES86474.1| ATP-dependent DNA helicase [Bacteroides sp. 3_2_5] Length = 786 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 55/163 (33%), Gaps = 38/163 (23%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 D I + Q A + V A AGSGKT +L ++ LL +P +L LT T Sbjct: 3 DYIEELNESQRAAVLYGDGPSLVIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + +AR L + Sbjct: 63 AAREMKERIARQVGE--------------------------QRARFL-----------WM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ TS F I D SK LI K Sbjct: 86 GTFHSVFSRILRAEASHIGFTSQFTIYDSADSKSLIRSIIKEM 128 >gi|139438971|ref|ZP_01772431.1| Hypothetical protein COLAER_01437 [Collinsella aerofaciens ATCC 25986] gi|133775682|gb|EBA39502.1| Hypothetical protein COLAER_01437 [Collinsella aerofaciens ATCC 25986] Length = 1210 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 70/189 (37%), Gaps = 38/189 (20%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCL 68 +DL + + + R +VSA AGSGKT L +R++ L + P +L + Sbjct: 1 MDLSTLMPQQLQIVKTLDRPLFVSAGAGSGKTFTLTRRIVYALSPESGPFVEHLDQVLAI 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T TK AAAE+ RV + + + T Sbjct: 61 TFTKDAAAEIRDRVRRALIDEGMDEEAL------------------------------TV 90 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML-DNNEE 187 + TIH C I++ LE I F + + +L+++A + LA D E Sbjct: 91 DDAWISTIHGMCSRILRAHALELGIDPEFTVLTDTD--ELMDQAVEHVLARATAPDAAPE 148 Query: 188 LKKAFYEIL 196 L + + Sbjct: 149 LAASLKALY 157 >gi|153006283|ref|YP_001380608.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5] gi|152029856|gb|ABS27624.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5] Length = 682 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 57/169 (33%), Gaps = 38/169 (22%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 Q + +DL + ++ + V A AGSGKT ++ RV LLL P +L Sbjct: 5 QRAAPMLDLSTLNPPQREAVTTTEGPLLVLAGAGSGKTRVIAHRVAYLLLQGVEPEQILA 64 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV + Sbjct: 65 VTFTNKAAGEMRERVAALAGPPGV------------------------------------ 88 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+F ++++ A + FAI D L++ + Sbjct: 89 --DVFVSTFHSFGLWLLKEEHKAAGLPKRFAICDAGDQAALVKRCMREV 135 >gi|125622886|ref|YP_001031369.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp. cremoris MG1363] gi|251764529|sp|A2RH77|ADDA_LACLM RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|124491694|emb|CAL96613.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp. cremoris MG1363] gi|300069624|gb|ADJ59024.1| ATP-dependent nuclease subunit A [Lactococcus lactis subsp. cremoris NZ9000] Length = 1203 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 37/231 (16%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + T + ++ VSA+AGSGKT ++ QR++ + L T TK AA+ Sbjct: 4 VKLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAAS 63 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R+ + S + A H L L+ + T+ Sbjct: 64 ELRMRLERDLKKARQESSDDEEA-------------------HRLTLALQNLSNADIGTM 104 Query: 137 HAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +F + + + NI +F I D+ +S + +E + + S + + Sbjct: 105 DSFTQKLTKANFNRVNIDPNFRILADQTESDLIRQEVFEQLVESYLSADES--------- 155 Query: 196 LEISNDEDIETLISDIISNRTAL---KLIFFFFSYL----WRRKIIEKSLW 239 L IS D+ E LI + +R L K+++ + + +E Sbjct: 156 LNISKDK-FEKLIKNFSKDRNILGFQKVVYTIYRFASATENPISWLENQFL 205 >gi|2909716|gb|AAC12966.1| exonuclease RexA [Lactococcus lactis subsp. cremoris MG1363] Length = 1173 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 37/231 (16%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + T + ++ VSA+AGSGKT ++ QR++ + L T TK AA+ Sbjct: 4 VKLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAAS 63 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R+ + S + A H L L+ + T+ Sbjct: 64 ELRMRLERDLKKARQESSDDEEA-------------------HRLTLALQNLSNADIGTM 104 Query: 137 HAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +F + + + NI +F I D+ +S + +E + + S + + Sbjct: 105 DSFTQKLTKANFNRVNIDPNFRILADQTESDLIRQEVFEQLVESYLSADES--------- 155 Query: 196 LEISNDEDIETLISDIISNRTAL---KLIFFFFSYL----WRRKIIEKSLW 239 L IS D+ E LI + +R L K+++ + + +E Sbjct: 156 LNISKDK-FEKLIKNFSKDRNILGFQKVVYTIYRFASATENPISWLENQFL 205 >gi|256852263|ref|ZP_05557649.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 27-2-CHN] gi|260661705|ref|ZP_05862616.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 115-3-CHN] gi|282934843|ref|ZP_06340076.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1] gi|297205570|ref|ZP_06922966.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii JV-V16] gi|256615309|gb|EEU20500.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 27-2-CHN] gi|260547452|gb|EEX23431.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 115-3-CHN] gi|281301074|gb|EFA93385.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii 208-1] gi|297150148|gb|EFH30445.1| ATP-dependent DNA helicase PcrA [Lactobacillus jensenii JV-V16] Length = 754 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 41/211 (19%), Positives = 72/211 (34%), Gaps = 53/211 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q V A AGSGKT +L +R+ L+ P +L +T T AA EM Sbjct: 11 NPQQQEAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEEKGVAPWNILAITFTNKAATEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + + T HA Sbjct: 71 KERVQKLLGPAGQ--------------------------------------DVWMSTFHA 92 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST------------LASIMLDNNE 186 C I+++ + + +F+IAD + LI+ +K L++I N+ Sbjct: 93 LCVRILRRDADKIGYSRNFSIADSSEQVTLIKHIEKDLNINPKQYNPRAILSAISNAKND 152 Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTA 217 L + S + + ++S+I Sbjct: 153 LLNP--KDFESASGNRPFDQVVSEIYKEYQK 181 >gi|331000444|ref|ZP_08324119.1| putative DNA helicase II [Parasutterella excrementihominis YIT 11859] gi|329571776|gb|EGG53456.1| putative DNA helicase II [Parasutterella excrementihominis YIT 11859] Length = 781 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 79/218 (36%), Gaps = 45/218 (20%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76 S K + + +SA + A AGSGKT +L R+ LL N AHPS +L +T T AA Sbjct: 7 SLNKQQAQAVTAEPKSALILAGAGSGKTRVLTSRIAYLLQQNMAHPSEILAVTFTNKAAK 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ +I P + V T Sbjct: 67 EMLARLQNMIPI--------------------------------------NPRAMWVGTF 88 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H C +++ EA + S FAI D +I+ K+ +D E + + Sbjct: 89 HGLCNRLLRLHHQEAGLPSTFAILDMSDQLGVIKRVMKAN----GIDTEEFKPREVQNFI 144 Query: 197 EISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRK 232 +E + S ++ +++ + + L R Sbjct: 145 NRCKEEGKRASEVYSKFSKDKAYIQIYAMYEAVLQREG 182 >gi|148558984|ref|YP_001259307.1| DNA helicase II [Brucella ovis ATCC 25840] gi|148370241|gb|ABQ60220.1| DNA helicase II [Brucella ovis ATCC 25840] Length = 858 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q+H E L ++ V A AG+GKT +L R+ +L A+PS +L Sbjct: 37 QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ ++ Sbjct: 97 AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ ++++ N+TS F I D + +LI++ + + LD+ Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175 Query: 187 ELKKAFYEILEISNDEDI 204 + F +++ ++ Sbjct: 176 WPARTFANMIDGWKNKGF 193 >gi|116074476|ref|ZP_01471738.1| UvrD/REP helicase [Synechococcus sp. RS9916] gi|116069781|gb|EAU75533.1| UvrD/REP helicase [Synechococcus sp. RS9916] Length = 795 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 17/173 (9%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + ++ Q A D V A AGSGKT L R+ L+ A P+ +L +T T Sbjct: 1 MSFLAGLNDAQRRAVDHHEGPLLVVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ + S++ + P + + + L Sbjct: 61 NKAAREMKERLELLLA------QRLASSQFGQPWSTLPAVEQRQLRSRIYREVTK---EL 111 Query: 132 KVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178 + T HA +++ +F + T F+I DE ++ L++E L Sbjct: 112 WIGTFHALFARMLRFDIDKFKDAEGLTWTKQFSIYDEADAQSLVKEIVTQELQ 164 >gi|289705452|ref|ZP_06501846.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58] gi|289557837|gb|EFD51134.1| putative ATP-dependent DNA helicase PcrA [Micrococcus luteus SK58] Length = 963 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 56/162 (34%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L++ +Q A + + A AGSGKT +L R+ LL A P +L +T T Sbjct: 62 LVAGLNPQQAAAVTHTGAPLLIVAGAGSGKTRVLTHRIAWLLATGRARPHEILAITFTNK 121 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM RV +I T + + Sbjct: 122 AAAEMRERVAGLIGP--------------------------------------TAQRMWI 143 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ +++ + S F I D S +L+ K Sbjct: 144 STFHSSAVRLLRNEAANIGLKSTFTIYDSADSLRLVTTVAKQ 185 >gi|254697750|ref|ZP_05159578.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59] gi|260762180|ref|ZP_05874523.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59] gi|260672612|gb|EEX59433.1| UvrD/REP helicase [Brucella abortus bv. 2 str. 86/8/59] Length = 853 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q+H E L ++ V A AG+GKT +L R+ +L A+PS +L Sbjct: 37 QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ ++ Sbjct: 97 AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ ++++ N+TS F I D + +LI++ + + LD+ Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175 Query: 187 ELKKAFYEILEISNDEDI 204 + F +++ ++ Sbjct: 176 WPARTFANMIDGWKNKGF 193 >gi|221124374|ref|XP_002163232.1| PREDICTED: hypothetical protein [Hydra magnipapillata] Length = 815 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 76/235 (32%), Gaps = 46/235 (19%) Query: 5 NSFQEHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62 +SF T L+ EQL A P A + A AGSGKT +L R+ LL P Sbjct: 2 HSFAAAGSTPPLLHNLNPEQLAAVTLPAEHALILAGAGSGKTRVLTTRIAWLLQNGYVSP 61 Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122 +L +T T AA EM R+ ++ Sbjct: 62 GGILAVTFTNKAAKEMMTRLSAMLPV---------------------------------- 87 Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 G+ + T H C ++ A + F I D + A K + Sbjct: 88 ----NVRGMWIGTFHGLCNRFLRAHFKNAGLPQAFQILDTQDQLS----AIKRLCKQYKI 139 Query: 183 DNNEELKKAFYEILEISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIE 235 D+ K + +E + +++ R +++ + R +++ Sbjct: 140 DDERFPPKQMAWFIGNCKEEGLRPKDVVASDPDTRKKIEIYQLYEDQCQREGVVD 194 >gi|163815569|ref|ZP_02206942.1| hypothetical protein COPEUT_01743 [Coprococcus eutactus ATCC 27759] gi|158449206|gb|EDP26201.1| hypothetical protein COPEUT_01743 [Coprococcus eutactus ATCC 27759] Length = 789 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 63/188 (33%), Gaps = 43/188 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 + +Q + A AGSGKT ++ RV L+ +P +L +T T A Sbjct: 17 MAGLNDMQQQACEHVDGPLLILAGAGSGKTRVITHRVAYLMDHEGVNPLNILAITFTNKA 76 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV I+ + + V Sbjct: 77 AREMRDRVDLIVGEGA--------------------------------------DRVWVS 98 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C I++++ + +F I D + K KS L +D +K F Sbjct: 99 TFHSLCVRILRRYADKIGYEKNFDIYDSDDQKS----TVKSILKDFQIDPKRYPEKMFMS 154 Query: 195 ILEISNDE 202 + + ++ Sbjct: 155 EISKAKEK 162 >gi|153806585|ref|ZP_01959253.1| hypothetical protein BACCAC_00855 [Bacteroides caccae ATCC 43185] gi|149131262|gb|EDM22468.1| hypothetical protein BACCAC_00855 [Bacteroides caccae ATCC 43185] Length = 817 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 60/171 (35%), Gaps = 38/171 (22%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + I + Q A + V A AGSGKT +L ++ LL +P +L LT T Sbjct: 4 NYIEELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + M +AR+L + Sbjct: 64 AAREMKERIARQVG--------------------------MERARYL-----------WM 86 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 T H+ I++ TS F I D SK L+ L + ++ Sbjct: 87 GTFHSIFSRILRAEASYIGFTSKFTIYDTADSKSLLITIIDEVLKEKVHED 137 >gi|306843240|ref|ZP_07475850.1| DNA helicase II [Brucella sp. BO2] gi|306286563|gb|EFM58142.1| DNA helicase II [Brucella sp. BO2] Length = 863 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q+H E L ++ V A AG+GKT +L R+ +L A+PS +L Sbjct: 37 QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ ++ Sbjct: 97 AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ ++++ N+TS F I D + +LI++ + + LD+ Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175 Query: 187 ELKKAFYEILEISNDEDI 204 + F +++ ++ Sbjct: 176 WPARTFANMIDGWKNKGF 193 >gi|71910408|ref|YP_281958.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS5005] gi|71853190|gb|AAZ51213.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS5005] Length = 1222 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 91/238 (38%), Gaps = 28/238 (11%) Query: 7 FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 QE+ D + ++Q+ A ++ VSA+AGSGKT ++V+R+L +L L Sbjct: 28 LQENERCRDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 T T AA E+ R+ + + + + + + L L Sbjct: 88 FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184 ++ + T+ AF + ++ ++ I+S F I D+ + L +E M Sbjct: 129 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFNEFMNQK 188 Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 + +A + S + + +++ F S + ++++ S A Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239 >gi|303257893|ref|ZP_07343902.1| DNA helicase II [Burkholderiales bacterium 1_1_47] gi|302859236|gb|EFL82318.1| DNA helicase II [Burkholderiales bacterium 1_1_47] Length = 787 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 79/218 (36%), Gaps = 45/218 (20%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76 S K + + +SA + A AGSGKT +L R+ LL N AHPS +L +T T AA Sbjct: 13 SLNKQQAQAVTAEPKSALILAGAGSGKTRVLTSRIAYLLQQNMAHPSEILAVTFTNKAAK 72 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ +I P + V T Sbjct: 73 EMLARLQNMIPI--------------------------------------NPRAMWVGTF 94 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H C +++ EA + S FAI D +I+ K+ +D E + + Sbjct: 95 HGLCNRLLRLHHQEAGLPSTFAILDMSDQLGVIKRVMKAN----GIDTEEFKPREVQNFI 150 Query: 197 EISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRK 232 +E + S ++ +++ + + L R Sbjct: 151 NRCKEEGKRASEVYSKFSKDKAYIQIYAMYEAVLQREG 188 >gi|13471509|ref|NP_103075.1| DNA helicase II [Mesorhizobium loti MAFF303099] gi|14022251|dbj|BAB48861.1| DNA helicase II [Mesorhizobium loti MAFF303099] Length = 817 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 42/191 (21%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTK 72 D + EQ LA + T V A AG+GKT +L R+ +L PS +L +T T Sbjct: 12 DYLKGLNPEQRLAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGKAFPSQILAVTFTN 71 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + G Sbjct: 72 KAAREMKQRIGILIGEGNVE------------------------------------GMPW 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ ++++ A + S F I D + +LI++ + + LD+ K F Sbjct: 96 LGTFHSIGVKLLRRHAELAGLRSDFTILDTDDVVRLIKQ----LIQAEGLDDKRWPAKQF 151 Query: 193 YEILEISNDED 203 ++++ ++ Sbjct: 152 AQMIDGWKNKG 162 >gi|60682035|ref|YP_212179.1| putative helicase [Bacteroides fragilis NCTC 9343] gi|60493469|emb|CAH08255.1| putative helicase [Bacteroides fragilis NCTC 9343] Length = 786 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 55/163 (33%), Gaps = 38/163 (23%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 D I + Q A + V A AGSGKT +L ++ LL +P +L LT T Sbjct: 3 DYIEELNESQRAAVLYGDGPSLVIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + +AR L + Sbjct: 63 AAREMKERIARQVGE--------------------------QRARFL-----------WM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ TS F I D SK LI K Sbjct: 86 GTFHSVFSRILRAEASHIGFTSQFTIYDSADSKSLIRSIIKEM 128 >gi|38233432|ref|NP_939199.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae NCTC 13129] gi|38199692|emb|CAE49351.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae] Length = 805 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 41/165 (24%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL +Q A + S + A AGSGKT +L +R+ L+ + P +L +T T Sbjct: 22 DLTEGLNPQQKAAVEHYGSPLLIVAGAGSGKTSVLTRRIAYLMRVRGVQPQNILAITFTN 81 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV ++ + + Sbjct: 82 KAAAEMRERVSSLVGPVAQ--------------------------------------RMW 103 Query: 133 VQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + ++F I D + SK+L+ K Sbjct: 104 VSTFHSTCVRILREQAQLVPGLNTNFTIYDSDDSKRLLSMISKDF 148 >gi|53713817|ref|YP_099809.1| ATP-dependent DNA helicase [Bacteroides fragilis YCH46] gi|52216682|dbj|BAD49275.1| ATP-dependent DNA helicase [Bacteroides fragilis YCH46] Length = 786 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 55/163 (33%), Gaps = 38/163 (23%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 D I + Q A + V A AGSGKT +L ++ LL +P +L LT T Sbjct: 3 DYIEELNESQRAAVLYGDGPSLVIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + +AR L + Sbjct: 63 AAREMKERIARQVGE--------------------------QRARFL-----------WM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ TS F I D SK LI K Sbjct: 86 GTFHSVFSRILRAEASHIGFTSQFTIYDSADSKSLIRSIIKEM 128 >gi|301163499|emb|CBW23050.1| putative helicase [Bacteroides fragilis 638R] Length = 786 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 55/163 (33%), Gaps = 38/163 (23%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 D I + Q A + V A AGSGKT +L ++ LL +P +L LT T Sbjct: 3 DYIEELNESQRAAVLYGDGPSLVIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + +AR L + Sbjct: 63 AAREMKERIARQVGE--------------------------QRARFL-----------WM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ TS F I D SK LI K Sbjct: 86 GTFHSVFSRILRAEASHIGFTSQFTIYDSADSKSLIRSIIKEM 128 >gi|295093819|emb|CBK82910.1| Superfamily I DNA and RNA helicases [Coprococcus sp. ART55/1] Length = 782 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 63/188 (33%), Gaps = 43/188 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 + ++ + A AGSGKT ++ RV L+ +P +L +T T A Sbjct: 1 MAGLNDMQEQACEHVDGPLLILAGAGSGKTRVITHRVAYLMEHEGVNPLNILAITFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV I+ + + V Sbjct: 61 AREMRERVDLIVGDGA--------------------------------------DRVWVS 82 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C I++++ + +F I D + K KS L +D +K F Sbjct: 83 TFHSLCVRILRRYADKIGYGKNFDIYDSDDQKS----TVKSILKDFQIDPKRYPEKMFMA 138 Query: 195 ILEISNDE 202 + + ++ Sbjct: 139 EISKAKEK 146 >gi|302536344|ref|ZP_07288686.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. C] gi|302445239|gb|EFL17055.1| ATP-dependent DNA helicase PcrA [Streptomyces sp. C] Length = 825 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 +D +++ + + A AGSGKT +L R+ LL N HP +L +T T Sbjct: 65 LLDGLNE--QQAAAVVHAGSPLLIVAGAGSGKTRVLTHRIGHLLSARNVHPGQILAITFT 122 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ + + Sbjct: 123 NKAAGEMKERVEGLVGPRA--------------------------------------NAM 144 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ TS F+I D SK+L+ + Sbjct: 145 WVSTFHSACVRILRRESKRLGFTSSFSIYDAADSKRLMALVCRDL 189 >gi|167766232|ref|ZP_02438285.1| hypothetical protein CLOSS21_00735 [Clostridium sp. SS2/1] gi|167712059|gb|EDS22638.1| hypothetical protein CLOSS21_00735 [Clostridium sp. SS2/1] gi|291559884|emb|CBL38684.1| ATP-dependent DNA helicase PcrA [butyrate-producing bacterium SSC/2] Length = 733 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 + +Q + A AGSGKT +L R+ L+ +P ++ +T T AA EM Sbjct: 8 NEQQQEAVFCTEGPLLLLAGAGSGKTRVLTHRIAYLMDQGVNPYHIMAITFTNKAAKEMR 67 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV +++ + + V T H+ Sbjct: 68 ERVDDLVGFGAEH--------------------------------------IWVSTFHST 89 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 C I+++ + + F I D + K LI++ K Sbjct: 90 CVRILRRHIDKLGYGNSFTIYDADDQKSLIKQICKQ 125 >gi|317497585|ref|ZP_07955903.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 5_1_63FAA] gi|316895144|gb|EFV17308.1| ATP-dependent DNA helicase PcrA [Lachnospiraceae bacterium 5_1_63FAA] Length = 733 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 + +Q + A AGSGKT +L R+ L+ +P ++ +T T AA EM Sbjct: 8 NEQQQEAVFCTEGPLLLLAGAGSGKTRVLTHRIAYLMDQGVNPYHIMAITFTNKAAKEMR 67 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV +++ + + V T H+ Sbjct: 68 ERVDDLVGFGAEH--------------------------------------IWVSTFHST 89 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 C I+++ + + F I D + K LI++ K Sbjct: 90 CVRILRRHIDKLGYGNSFTIYDADDQKSLIKQICKQ 125 >gi|253995787|ref|YP_003047851.1| UvrD/REP helicase [Methylotenera mobilis JLW8] gi|253982466|gb|ACT47324.1| UvrD/REP helicase [Methylotenera mobilis JLW8] Length = 736 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 79/225 (35%), Gaps = 45/225 (20%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ ++QL A P +SA + A AGSGKT +L R+ L+ P+ LL +T T Sbjct: 11 LLAGLNNKQLEAVTLPQQSALILAGAGSGKTRVLTARIAWLIQTEQVSPTGLLAVTFTNK 70 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + G+ V Sbjct: 71 AAKEMLTRITASLPI--------------------------------------NTRGMWV 92 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ EA + + F I D +I+ K +D+ + K Sbjct: 93 GTFHGLCNRLLRAHHREAGLPASFQILDIADQLSMIKRLMKLM----NVDDEKFPPKQVQ 148 Query: 194 EILEISNDEDIET-LISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 + DE + + + L+ IF + +R + Sbjct: 149 NYINGCKDEGLRAHAVDAYDPHSQKLREIFEEYDKQCQRDGVADF 193 >gi|227822621|ref|YP_002826593.1| DNA helicase II [Sinorhizobium fredii NGR234] gi|227341622|gb|ACP25840.1| DNA helicase II [Sinorhizobium fredii NGR234] Length = 871 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 72/193 (37%), Gaps = 43/193 (22%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D +S EQ A + V A AG+GKT +L R+ +L A+PS +L +T T Sbjct: 42 DYLSGLNPEQREAVETLEGPVLVLAGAGTGKTRVLTTRIAHILSTGRAYPSQILAVTFTN 101 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ G Sbjct: 102 KAAREMKERIGVLVGHAVE-------------------------------------GMPW 124 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ ++++ + S F I D + +LI++ + + LD+ K F Sbjct: 125 LGTFHSIGVKLLRRHAELVGLRSDFTILDTDDVVRLIKQ----LIQAEGLDDKRWPAKQF 180 Query: 193 YEILEISNDEDIE 205 +++ ++ ++ Sbjct: 181 AGMIDTWKNKGLD 193 >gi|254383079|ref|ZP_04998433.1| ATP-dependent DNA helicase II [Streptomyces sp. Mg1] gi|194341978|gb|EDX22944.1| ATP-dependent DNA helicase II [Streptomyces sp. Mg1] Length = 847 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 65/188 (34%), Gaps = 43/188 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 + + A AGSGKT +L R+ LL A HP +L +T T AA EM Sbjct: 70 NTEQAAAVVHAGSPLLIVAGAGSGKTRVLTHRIGHLLAARGVHPGQILAITFTNKAAGEM 129 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ + + V T H+ Sbjct: 130 RERVEGLVGPRA--------------------------------------NAMWVSTFHS 151 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C I+++ TS F+I D SK+L+ + LD + KAF + Sbjct: 152 ACVRILRRESKRLGFTSSFSIYDAADSKRLMALVCRDM----DLDPKKFPPKAFNAKISN 207 Query: 199 SNDEDIET 206 +E I+ Sbjct: 208 LKNELIDD 215 >gi|167762854|ref|ZP_02434981.1| hypothetical protein BACSTE_01212 [Bacteroides stercoris ATCC 43183] gi|167699194|gb|EDS15773.1| hypothetical protein BACSTE_01212 [Bacteroides stercoris ATCC 43183] Length = 781 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 55/163 (33%), Gaps = 38/163 (23%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 D I + Q A + V A AGSGKT +L ++ LL P +L LT T Sbjct: 3 DYIQELNEGQRAAVLYNDGPSLVIAGAGSGKTRVLTYKIAYLLENGYRPWDILALTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + A +ARHL + Sbjct: 63 AAREMKERIARQVGA--------------------------ERARHL-----------WM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I+ + T F + D SK L+ K Sbjct: 86 GTFHSIFLRILHAEAAQIGFTPKFTVYDTADSKSLLRSIIKEM 128 >gi|225351915|ref|ZP_03742938.1| hypothetical protein BIFPSEUDO_03519 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157162|gb|EEG70501.1| hypothetical protein BIFPSEUDO_03519 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 905 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 39/156 (25%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 LI +Q+ A ++ + A AGSGKT +L +R+ LL S++L +T T A Sbjct: 31 LIKDLNPQQMEAVKYYGQALLIGAGAGSGKTRVLTRRIAWLLAHGFWASSILAITFTNKA 90 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM R+ ++ + + + Sbjct: 91 AAEMRERLASLVGPEAEH--------------------------------------MWIS 112 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H+ C I+++ E +TS F+I D ++L++ Sbjct: 113 TFHSACVRILRRDGKEIGLTSGFSIYDTADCERLVK 148 >gi|329955139|ref|ZP_08296096.1| ATP-dependent DNA helicase PcrA [Bacteroides clarus YIT 12056] gi|328526138|gb|EGF53157.1| ATP-dependent DNA helicase PcrA [Bacteroides clarus YIT 12056] Length = 785 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 55/163 (33%), Gaps = 38/163 (23%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 D I + Q A + V A AGSGKT +L ++ LL P +L LT T Sbjct: 7 DYIQELNEGQRAAVLYNDGPSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNK 66 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + + +ARHL + Sbjct: 67 AAREMKERIARQVG--------------------------IERARHL-----------WM 89 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I+ TS F I D SK L+ K Sbjct: 90 GTFHSIFLRILHAEAARIGFTSKFTIYDTADSKSLLRSIIKEM 132 >gi|307152628|ref|YP_003888012.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7822] gi|306982856|gb|ADN14737.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7822] Length = 772 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 71/178 (39%), Gaps = 19/178 (10%) Query: 10 HSETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67 S ++D + Q Q A + V A AGSGKT L R+ L+ P +L Sbjct: 1 MSVSLDYLGQLNPSQRRAVEHYCGPLLVVAGAGSGKTRALTYRIAHLIRYHQVEPEHILA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ + G++ + + + LL + T Sbjct: 61 VTFTNKAAREMRERLERLFADELAQEKY----------GQRFSLLSEYEQKQLLSKVYRT 110 Query: 128 -PGGLKVQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAKKSTLA 178 L + T H+ C I++ ++ E + S+F+I DE ++ LI+ L Sbjct: 111 VTKKLWIGTFHSLCSRILRYDINKYQDERGRSWKSNFSIVDESDAQSLIKSIVTKELQ 168 >gi|327470754|gb|EGF16210.1| exonuclease RexA [Streptococcus sanguinis SK330] Length = 1224 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++VQR++ +L L T T AA E+ Sbjct: 29 TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVRQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R + K G+ ++D + + L L + T+ AF Sbjct: 89 ER-------------------LEKELGQALKEADSPELKQHLAQQLADLPNADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ ++ + +F I + L E + E + F +++ Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDHYY---DSERQALFSRLVKN 186 Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 + D+ R + ++ F S ++ +E++ Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPKRWLEETFL 223 >gi|291549932|emb|CBL26194.1| Superfamily I DNA and RNA helicases [Ruminococcus torques L2-14] Length = 768 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 62/163 (38%), Gaps = 41/163 (25%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 D +++ + E + +D + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 5 DKLNEPQREAVYHTD--GPLLILAGAGSGKTRVLTHRIAYLIGERGVNPWNILAITFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++ + + V Sbjct: 63 AAEEMRQRVDNLVGFGAE--------------------------------------SVWV 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ C I+++F +HF I D + K LI+E + Sbjct: 85 STFHSACVRILRRFIDRLGYENHFTIYDTDDQKTLIKEVCRKV 127 >gi|269468160|gb|EEZ79862.1| ATP-dependent DNA helicase [uncultured SUP05 cluster bacterium] Length = 1058 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 49/199 (24%), Positives = 91/199 (45%), Gaps = 5/199 (2%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 ++++ A D TRS V A AGSGKT +L QR L+LL P ++ +T T A E++ Sbjct: 3 DQAQRDEALDVTRSFIVQAPAGSGKTELLAQRYLKLLSICDDPENVMAMTFTNKAVDELT 62 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RVL + + ++E + K M ++++ +L+ P LK+ TI Sbjct: 63 ERVLSSLKS----TNEPRPKQAHKQITYDLALKVMERSQNRNWQLLQMPQRLKIFTIDGL 118 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 I ++P + +A + + KK+ A + L I + + ++ + L+ + Sbjct: 119 SSLITGRYPTPLQLVPPRIMAQDWERKKVYRLAAEQVLVMIDDEEHSKVISSLLLYLD-N 177 Query: 200 NDEDIETLISDIISNRTAL 218 N E L + +++ R Sbjct: 178 NIEKFYRLTTSMLAKRDQW 196 >gi|298385429|ref|ZP_06994987.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 1_1_14] gi|298261570|gb|EFI04436.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 1_1_14] Length = 788 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 56/163 (34%), Gaps = 38/163 (23%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + I + Q A + V A AGSGKT +L ++ LL P +L LT T Sbjct: 4 NYIEELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + M +AR+L + Sbjct: 64 AAREMKDRIARQVG--------------------------MERARYL-----------WM 86 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ TS F I D SK LI K Sbjct: 87 GTFHSVFSRILRAEAKYIGFTSQFTIYDSADSKSLIRSIIKEM 129 >gi|219856415|ref|YP_002473537.1| hypothetical protein CKR_3072 [Clostridium kluyveri NBRC 12016] gi|219570139|dbj|BAH08123.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 754 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL + EQ A + A AGSGKT +L R+ ++ N +PS +L +T T Sbjct: 10 MDLKNLLNKEQYEAVTTVEGPLLILAGAGSGKTRVLTYRIAHMIKDLNIYPSKILAITFT 69 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +++ + + Sbjct: 70 NKAAGEMKDRIRKLVG--------------------------------------DEVDSM 91 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + +FAI D K LI++ K Sbjct: 92 WVSTFHSSCVRILRREIDKLGYNRNFAIYDSYDQKVLIKQCMKEL 136 >gi|296127315|ref|YP_003634567.1| UvrD/REP helicase [Brachyspira murdochii DSM 12563] gi|296019131|gb|ADG72368.1| UvrD/REP helicase [Brachyspira murdochii DSM 12563] Length = 666 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 39/167 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 + ++ A AGSGKT ++ +R+ L+ PS +L +T T AA+EM Sbjct: 6 NEEQRQAVEHINGPLLALAGAGSGKTRVITERIAYLIKHGVLPSQILAVTFTNKAASEMR 65 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ +++ E P L V T H+F Sbjct: 66 ERITKLLK--------------------------------------EKPKQLVVSTFHSF 87 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNN 185 C +++ + S+F+I S+ LI + + ++ D N Sbjct: 88 CVRVLKGDIEKLGYKSNFSIYSSSDSRTLIRNILREIKINTLNYDEN 134 >gi|300775551|ref|ZP_07085412.1| ATP-dependent DNA helicase PcrA [Chryseobacterium gleum ATCC 35910] gi|300505578|gb|EFK36715.1| ATP-dependent DNA helicase PcrA [Chryseobacterium gleum ATCC 35910] Length = 776 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 55/164 (33%), Gaps = 38/164 (23%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D + Q A V A AGSGKT +L R+ L+ P +L LT T Sbjct: 1 MDYLKGLNESQYEAVTSLQGPLMVLAGAGSGKTRVLTMRIAHLIHNGIDPFNILALTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +++ L Sbjct: 61 KAAREMKDRIAKVVGE-------------------------------------SNARSLW 83 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ S+F I D++ + +I++ K Sbjct: 84 MGTFHSVFARILRIEAHYLGYPSNFTIYDQQDALNVIKKVLKDM 127 >gi|327489960|gb|EGF21749.1| exonuclease RexA [Streptococcus sanguinis SK1058] Length = 1224 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++VQR++ +L S L T T AA E+ Sbjct: 29 TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R + K G+ ++D + + L L + T+ AF Sbjct: 89 ER-------------------LEKELGQALKEADSPELKQHLAQQLADLPNADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ ++ + +F I + L E + E + F +++ Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDRYY---DSERQALFSSLVKN 186 Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 + D+ R + ++ F S ++ +E++ Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWLEETFL 223 >gi|325962273|ref|YP_004240179.1| ATP-dependent DNA helicase PcrA [Arthrobacter phenanthrenivorans Sphe3] gi|323468360|gb|ADX72045.1| ATP-dependent DNA helicase PcrA [Arthrobacter phenanthrenivorans Sphe3] Length = 830 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 77/197 (39%), Gaps = 45/197 (22%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 ++ ++ ++ + E + + P + A AGSGKT +L R+ L+ AH +L + Sbjct: 56 AAQLLEGLNPQQEEAVKHAGPA--LLIVAGAGSGKTRVLSNRIAYLIATGRAHHGEILAI 113 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AAAEM R+ ++ + + Sbjct: 114 TFTNKAAAEMRERIEALVGGRAKI------------------------------------ 137 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + + T H+ C I++Q + S+F+I D S +L+ + K + LD + Sbjct: 138 --MWISTFHSSCVRILRQEAANVGLKSNFSIYDSADSLRLVTQVSK----GLDLDPKKFA 191 Query: 189 KKAFYEILEISNDEDIE 205 KA + +E I+ Sbjct: 192 PKAIQHKISALKNELID 208 >gi|94990159|ref|YP_598259.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10270] gi|251764561|sp|Q1JHM1|ADDA_STRPD RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|94543667|gb|ABF33715.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10270] Length = 1222 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 91/238 (38%), Gaps = 28/238 (11%) Query: 7 FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 QE+ D + ++Q+ A ++ VSA+AGSGKT ++V+R+L +L L Sbjct: 28 LQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 T T AA E+ R+ + + + + + + L L Sbjct: 88 FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184 ++ + T+ AF + ++ ++ I+S F I D+ + L +E M Sbjct: 129 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFNEFMNQK 188 Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 + +A + S + + +++ F S + ++++ S A Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239 >gi|323345466|ref|ZP_08085689.1| ATP-dependent DNA helicase PcrA [Prevotella oralis ATCC 33269] gi|323093580|gb|EFZ36158.1| ATP-dependent DNA helicase PcrA [Prevotella oralis ATCC 33269] Length = 790 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 79/208 (37%), Gaps = 47/208 (22%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 + +D ++ ++ + + +D V A AGSGKT +L ++ LL + P +L LT Sbjct: 1 MNSILDQLNDSQRKAVEYTD--GPQLVIAGAGSGKTRVLTYKIAYLLHSGMKPWNILALT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ +I + Sbjct: 59 FTNKAANEMKSRIGNLIGH-------------------------------------DAVH 81 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 L++ T H+ I++ S+F I DE S+ LI KS + + LD+ Sbjct: 82 LLQIGTFHSVFSRILRVEAELLGYNSNFTIYDEADSRSLI----KSIIKEMGLDDKLYKP 137 Query: 190 KAFYEILEISNDEDIETLISDIISNRTA 217 + + ++ + LI+D++ N Sbjct: 138 AGVHNKISMAKNR----LITDVLYNSDK 161 >gi|251764601|sp|Q9A0H3|ADDA_STRP1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA Length = 1222 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 91/238 (38%), Gaps = 28/238 (11%) Query: 7 FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 QE+ D + ++Q+ A ++ VSA+AGSGKT ++V+R+L +L L Sbjct: 28 LQENERCRDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 T T AA E+ R+ + + + + + + L L Sbjct: 88 FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184 ++ + T+ AF + ++ ++ I+S F I D+ + L +E M Sbjct: 129 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFNEFMNQK 188 Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 + +A + S + + +++ F S + ++++ S A Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239 >gi|94994076|ref|YP_602174.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10750] gi|251764562|sp|Q1J7E4|ADDA_STRPF RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|94547584|gb|ABF37630.1| ATP-dependent nuclease subunit A [Streptococcus pyogenes MGAS10750] Length = 1222 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 92/238 (38%), Gaps = 28/238 (11%) Query: 7 FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 QE+ D + ++Q+ A ++ VSA+AGSGKT ++V+R+L +L L Sbjct: 28 LQENERCSDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 87 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 T T AA E+ R+ + + + + + + L L Sbjct: 88 FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 128 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184 ++ + T+ AF + ++ ++ I+S F I D+ + L +E + M Sbjct: 129 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQGVLKQEVFSKLFSEFMNQK 188 Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 + +A + S + + +++ F S + ++++ S A Sbjct: 189 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 239 >gi|297616808|ref|YP_003701967.1| UvrD/REP helicase [Syntrophothermus lipocalidus DSM 12680] gi|297144645|gb|ADI01402.1| UvrD/REP helicase [Syntrophothermus lipocalidus DSM 12680] Length = 709 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 41/166 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 + ++ ++Q + E +L D V A AGSGKT +L R+ L P +L +T Sbjct: 1 MKLVEGLNQEQKEAVLHVD--GPCLVLAGAGSGKTRVLTTRLAYLCHTGIRPRNILAITF 58 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV +I ++ G Sbjct: 59 TNKAAREMKERVERLIPGFT---------------------------------------G 79 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 +QT HA C I++Q + F+I DE + + L++E + Sbjct: 80 QWIQTFHATCYRILRQEIDRLGYSRDFSIVDEAEQRALVKECLQDL 125 >gi|139439548|ref|ZP_01772980.1| Hypothetical protein COLAER_02007 [Collinsella aerofaciens ATCC 25986] gi|133775101|gb|EBA38921.1| Hypothetical protein COLAER_02007 [Collinsella aerofaciens ATCC 25986] Length = 966 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 63/165 (38%), Gaps = 39/165 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D+ S +++ V A AGSGKT +L R+ +L P +L +T T Sbjct: 56 LVDIDSLNPAQREAVLSTEGPLLVLAGAGSGKTRVLTFRIAHMLGDLGVKPWQVLAITFT 115 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM R+ +I + + G+ Sbjct: 116 NKAAAEMRERLAALIPSGTR--------------------------------------GM 137 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HA C ++++ T F I D++ SK+++ + ++ Sbjct: 138 WVCTFHAMCVRMLREDADLLGYTGQFTIYDDDDSKRMVRDIMQAL 182 >gi|254476738|ref|ZP_05090124.1| UvrD/REP helicase domain protein [Ruegeria sp. R11] gi|214030981|gb|EEB71816.1| UvrD/REP helicase domain protein [Ruegeria sp. R11] Length = 786 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 71/193 (36%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ + + + + + A AG+GKT L R++ LL+ A P+ +L +T T Sbjct: 27 YLDGLNPAQRQAVECLE--GPVLMLAGAGTGKTKALTARIVHLLMTGSAKPNEILAVTFT 84 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ Sbjct: 85 NKAAREMKDRVGAMLGQAIEGVP------------------------------------- 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C ++++ + S+F I D + +L+++ + + +D+ + Sbjct: 108 WLGTFHSICVKLLRRHAELVGLKSNFTILDTDDQIRLLKQ----LIKAEGIDDKRWPARM 163 Query: 192 FYEILEISNDEDI 204 I++ + + Sbjct: 164 LAGIIDDWKNRAL 176 >gi|86156526|ref|YP_463311.1| ATP-dependent DNA helicase Rep [Anaeromyxobacter dehalogenans 2CP-C] gi|85773037|gb|ABC79874.1| ATP-dependent DNA helicase, Rep family [Anaeromyxobacter dehalogenans 2CP-C] Length = 797 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 64/176 (36%), Gaps = 44/176 (25%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL+ Q A V A AGSGKT ++V R+ RL+ P +L +T T Sbjct: 11 DLLQDLNDAQREAVLHDDGPLLVLAGAGSGKTRVIVHRIARLVRDRGVVPWHVLAVTFTN 70 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + L Sbjct: 71 KAAGEMRERLERLLGPLAR--------------------------------------ELW 92 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 VQT HAF +++ A + FAI D++ +L K LA + LD E L Sbjct: 93 VQTFHAFGARFLRREAARAGLPPSFAIYDDDDQLRL----VKRILAEVGLDEAEGL 144 >gi|294339627|emb|CAZ87986.1| DNA helicase II [Thiomonas sp. 3As] Length = 781 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 66/192 (34%), Gaps = 44/192 (22%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 LI Q EQ A P +A + A AGSGKT +L R+ L+ P+ +L +T T Sbjct: 4 LIQQLNPEQRAAVTLPAENALILAGAGSGKTRVLTTRIAWLISTGQVTPAGILAVTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + G+ + Sbjct: 64 AAKEMMARLSAQLPIPVR--------------------------------------GMWI 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C ++ EA + F I D + + K L ++ +D+ K Sbjct: 86 GTFHGLCNRFLRAHWREAGLPQTFQILDIQDQLA----SIKRLLKALNVDDERHPPKQVQ 141 Query: 194 EILEISNDEDIE 205 + + D+ + Sbjct: 142 WFINGAKDQGLR 153 >gi|257066475|ref|YP_003152731.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548] gi|256798355|gb|ACV29010.1| UvrD/REP helicase [Anaerococcus prevotii DSM 20548] Length = 731 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 62/188 (32%), Gaps = 43/188 (22%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 ++L K ++ V A AGSGKT +L + L+ N P ++ +T T Sbjct: 1 MNLDGLNKMQRKAVLHDEGPLLVLAGAGSGKTRVLTTSIAYLIEEKNIDPRNIIAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +++ L Sbjct: 61 KAANEMKERISKLLGMDV--------------------------------------SHLW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ C I++ + +F I D K LI+E + + ++ + A Sbjct: 83 IGTFHSICARILRMNIDKIGYDRNFTIYDTSDQKTLIKE----IINELGYKDDIAPRDAL 138 Query: 193 YEILEISN 200 I N Sbjct: 139 NVISSAKN 146 >gi|15674822|ref|NP_268996.1| putative ATP-dependent exonuclease subunit A [Streptococcus pyogenes M1 GAS] gi|13621954|gb|AAK33717.1| putative ATP-dependent exonuclease, subunit A [Streptococcus pyogenes M1 GAS] Length = 1210 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 91/238 (38%), Gaps = 28/238 (11%) Query: 7 FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 QE+ D + ++Q+ A ++ VSA+AGSGKT ++V+R+L +L L Sbjct: 16 LQENERCRDQSQKRTAQQIEAIYTSGQNILVSASAGSGKTFVMVERILDKILRGVSIDRL 75 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 T T AA E+ R+ + + + + + + L L Sbjct: 76 FISTFTVKAATELRERIENKLYSQIAQTTDF-------------------QMKVYLTEQL 116 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184 ++ + T+ AF + ++ ++ I+S F I D+ + L +E M Sbjct: 117 QSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRIMQDKAEQDVLKQEVFSKLFNEFMNQK 176 Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 + +A + S + + +++ F S + ++++ S A Sbjct: 177 EAPVFRALVK--NFSGNCKDTSAFRELV-----YTCYSFSQSTENPKIWLQENFLSAA 227 >gi|84687310|ref|ZP_01015190.1| Putative uvrD/DNA Helicase II [Maritimibacter alkaliphilus HTCC2654] gi|84664743|gb|EAQ11227.1| Putative uvrD/DNA Helicase II [Rhodobacterales bacterium HTCC2654] Length = 794 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 72/195 (36%), Gaps = 44/195 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 S +D ++ + E + A D + A AG+GKT L R+ LL + A P+ +L +T Sbjct: 8 SPYLDELNPAQREAVEALD--GPVLMLAGAGTGKTKALTARIAHLLNTHTARPNEILAVT 65 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV + G Sbjct: 66 FTNKAAREMKDRVGRHLGEAVE-------------------------------------G 88 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + T HA C ++++ + S+F I D + +L+++ +A+ +D Sbjct: 89 MPWLGTFHAICVKLLRRHAELVGLKSNFTILDTDDQIRLMKQ----LIAAENIDEKRWPA 144 Query: 190 KAFYEILEISNDEDI 204 + I++ + I Sbjct: 145 RLLAGIIDNWKNRAI 159 >gi|322807582|emb|CBZ05157.1| ATP-dependent DNA helicase UvrD/PcrA [Clostridium botulinum H04402 065] Length = 738 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL ++ EQ A + A AGSGKT +L R+ ++ + +PS +L +T T Sbjct: 1 MDLKNKLNKEQYEAAITIDGPLLILAGAGSGKTRVLTYRIAHMIENLDIYPSKILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ G+ Sbjct: 61 NKAAGEMKERIKALVGDVVE--------------------------------------GM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + +F I D K L+++ + Sbjct: 83 WVSTFHSSCVRILRREIDKLGYDKNFTIYDTYDQKTLVKQCMEEL 127 >gi|313906496|ref|ZP_07839829.1| UvrD/REP helicase [Eubacterium cellulosolvens 6] gi|313468662|gb|EFR64031.1| UvrD/REP helicase [Eubacterium cellulosolvens 6] Length = 799 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++ + +Q A + + A AGSGKT +L R+ ++ P ++ +T T Sbjct: 1 MNYLENLNPQQKEAVEYTEGPLLILAGAGSGKTRVLTCRIAHMIAEKGVAPWNIMAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +++ + + Sbjct: 61 NKAAGEMRERVDQLVGQGA--------------------------------------DNI 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I++++ F I D + SK++++E ++ Sbjct: 83 WVSTFHSSCCRILRRYIDRIGYDRSFTIYDTDDSKQVMKEVIRAL 127 >gi|78211730|ref|YP_380509.1| ATP-dependent DNA helicase Rep [Synechococcus sp. CC9605] gi|78196189|gb|ABB33954.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9605] Length = 796 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 21/175 (12%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + ++ Q A D V A AGSGKT L R+ L+ A P+ +L +T T Sbjct: 1 MSFLAGLNDAQRRAVDHHEGPLLVVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL--ETPG 129 AA EM R+ + +L+ + + Q +P + + L + + E Sbjct: 61 NKAAREMKERL-----------EVLLAQRLAQSQYGQPWSTLPPVEQRQLRSCIYREVTK 109 Query: 130 GLKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178 L + T HA +++ +F + T F+I DE ++ L++E L Sbjct: 110 ELWIGTFHALFARMLRYDIDKFKDAEGLTWTKQFSIYDEADAQSLVKEIVTQELQ 164 >gi|329945395|ref|ZP_08293158.1| putative ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 170 str. F0386] gi|328529017|gb|EGF55948.1| putative ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 170 str. F0386] Length = 974 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 61/168 (36%), Gaps = 40/168 (23%) Query: 11 SETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 S+ +L+S Q A + + A AGSGKT +L R+ L+ A P +L + Sbjct: 115 SDPAELLSGLNPAQEAAVTHVGAPLLIIAGAGSGKTRVLTHRIAHLIATGRARPGEILAI 174 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AAAEM RV ++ Sbjct: 175 TFTNKAAAEMRERVTALVGPAGE------------------------------------- 197 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ A + S F+I D S +LI + Sbjct: 198 -RMWVSTFHSACVRILRREHEAAGLRSTFSIYDAADSTRLITLIVREL 244 >gi|311746368|ref|ZP_07720153.1| putative UvrD/REP helicase domain protein [Algoriphagus sp. PR1] gi|126575253|gb|EAZ79585.1| putative UvrD/REP helicase domain protein [Algoriphagus sp. PR1] Length = 1069 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 8/186 (4%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA--WS 90 ++AGSGKT+ L L+L L + H +L +T T A EM R++E + ++ Sbjct: 7 IIYKSSAGSGKTYTLTLEYLKLALQSPHAFKQILAVTFTNKATQEMKERIVEELKRLRFN 66 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 DE + E+ + + A+ L IL G V TI +F + +++ F E Sbjct: 67 VKPDEKMDRELMNSLEVDESGLKV-LAQQTLTAILHDYGRFSVSTIDSFFQKVVRAFARE 125 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN--NEELKKAFYEILEISNDEDIETLI 208 ++ + F + E ++E + +M D ++ L YE ++ DI I Sbjct: 126 IDLNAKFDV--ELDQDAVLERVVDRVVMLVMEDEFLHKWLVDYAYEQIQNGKSWDIRRNI 183 Query: 209 SDIISN 214 + Sbjct: 184 RGLGKQ 189 >gi|300863743|ref|ZP_07108674.1| ATP-dependent DNA helicase PcrA [Oscillatoria sp. PCC 6506] gi|300338250|emb|CBN53820.1| ATP-dependent DNA helicase PcrA [Oscillatoria sp. PCC 6506] Length = 794 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 48/200 (24%), Positives = 75/200 (37%), Gaps = 21/200 (10%) Query: 10 HSETIDLISQTK-SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 + T D +SQ S++ V A AGSGKT L RV L+ + P +L Sbjct: 13 MTPTTDFLSQLNPSQRQSVEHFCGPLLVVAGAGSGKTRALTYRVANLIRTHRVDPDNILA 72 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ ++ + GK + L + Sbjct: 73 VTFTNKAAREMKERIEKLFAT----------GQAEAKYGKPLEALAPDEQARLRSGVYRN 122 Query: 128 P-GGLKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASI 180 L V T H+ C I++ +F E +F+I DE ++ L+++ L Sbjct: 123 YIKPLWVGTFHSLCARILRYDIEKFQDEKGRRWRKNFSIIDESDAQSLVKDIVTRQLN-- 180 Query: 181 MLDNNEELKKAFYEILEISN 200 + D E + Y I N Sbjct: 181 LDDKKFEPRNVRYAISNAKN 200 >gi|153956081|ref|YP_001396846.1| PcrA [Clostridium kluyveri DSM 555] gi|146348939|gb|EDK35475.1| PcrA [Clostridium kluyveri DSM 555] Length = 745 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL + EQ A + A AGSGKT +L R+ ++ N +PS +L +T T Sbjct: 1 MDLKNLLNKEQYEAVTTVEGPLLILAGAGSGKTRVLTYRIAHMIKDLNIYPSKILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +++ + + Sbjct: 61 NKAAGEMKDRIRKLVG--------------------------------------DEVDSM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + +FAI D K LI++ K Sbjct: 83 WVSTFHSSCVRILRREIDKLGYNRNFAIYDSYDQKVLIKQCMKEL 127 >gi|33864717|ref|NP_896276.1| UvrD/REP helicase [Synechococcus sp. WH 8102] gi|33632240|emb|CAE06696.1| UvrD/REP helicase [Synechococcus sp. WH 8102] Length = 797 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 17/173 (9%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + ++ Q A D V A AGSGKT L R+ L+ A P+ +L +T T Sbjct: 1 MSFLAGLNDAQRRAVDHHEGPLLVVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ + L+ D + R + E L Sbjct: 61 NKAAREMKERLEVLLA-------QKLAQSQYGQPWSTLPPVDQRQLRSRIYR--EVSKEL 111 Query: 132 KVQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAKKSTLA 178 + T HA +++ +F ++ F+I DE ++ L++E L Sbjct: 112 WIGTFHALFARMLRYDIDKFKDAEGLSWTKQFSIYDEADAQSLVKEIVTQELQ 164 >gi|324993970|gb|EGC25889.1| exonuclease RexA [Streptococcus sanguinis SK405] Length = 1224 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++VQR++ +L S L T T AA E+ Sbjct: 29 TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R + K G+ ++D + + L L + T+ AF Sbjct: 89 ER-------------------LEKELGQALKEADSPELKQHLAQQLADLPNADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ ++ + +F I + L E + E + F +++ Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDRYY---DSERQALFSSLVKN 186 Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 + D+ R + ++ F S ++ +E++ Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWLEETFL 223 >gi|269955531|ref|YP_003325320.1| ATP-dependent DNA helicase PcrA [Xylanimonas cellulosilytica DSM 15894] gi|269304212|gb|ACZ29762.1| ATP-dependent DNA helicase PcrA [Xylanimonas cellulosilytica DSM 15894] Length = 896 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ ++ + A AGSGKT +L R+ LL A +L +T T Sbjct: 76 LLDGLN--PQQRAAVEHHGSPLLIVAGAGSGKTRVLTHRIAYLLATGRARAGEILAITFT 133 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM RV ++ + + Sbjct: 134 NKAAAEMRERVEHLVGPAA--------------------------------------SRM 155 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + S F+I D S++L+ + Sbjct: 156 WVSTFHSACVRILRREYKVLGLRSSFSIYDAADSQRLVTLVTREL 200 >gi|325293426|ref|YP_004279290.1| DNA helicase II [Agrobacterium sp. H13-3] gi|325061279|gb|ADY64970.1| DNA helicase II [Agrobacterium sp. H13-3] Length = 824 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 43/192 (22%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D +S EQ A + + V A AG+GKT +L R+ +L A+PS +L +T T Sbjct: 51 DYLSGLNPEQREAVETLDGAVLVLAGAGTGKTRVLTTRIAHILATGRAYPSQILAVTFTN 110 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ G Sbjct: 111 KAAREMKERIGVLVGGAVE-------------------------------------GMPW 133 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ ++++ + S F I D + +LI++ + + LD+ K F Sbjct: 134 LGTFHSIGVKLLRRHAELIGLKSDFTILDTDDVVRLIKQ----LIQAEGLDDKRWPAKQF 189 Query: 193 YEILEISNDEDI 204 +++ ++ + Sbjct: 190 AGMIDGWKNKGL 201 >gi|324994711|gb|EGC26624.1| exonuclease RexA [Streptococcus sanguinis SK678] Length = 1224 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++VQR++ +L S L T T AA E+ Sbjct: 29 TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R + K G+ ++D + + L L + T+ AF Sbjct: 89 ER-------------------LEKELGQALKEADSPELKQHLAQQLADLPNADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ ++ + +F I + L E + E + F +++ Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDRYY---DSERQALFSSLVKN 186 Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 + D+ R + ++ F S ++ +E++ Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWLEETFL 223 >gi|265764162|ref|ZP_06092730.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_16] gi|263256770|gb|EEZ28116.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_16] Length = 786 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 55/163 (33%), Gaps = 38/163 (23%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 D I + Q A + V A AGSGKT +L ++ LL +P +L LT T Sbjct: 3 DYIEELNESQRAAVLYGDGPSLVIAGAGSGKTRVLTYKIAYLLENGYNPWNILALTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + +AR L + Sbjct: 63 AAREMKERIARQVGE--------------------------QRARFL-----------WM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ TS F I D SK LI K Sbjct: 86 GTFHSVFSRILRAEASHIGFTSQFTIYDSADSKSLIRSIIKEM 128 >gi|76799128|ref|ZP_00781314.1| exonuclease RexA [Streptococcus agalactiae 18RS21] gi|76585514|gb|EAO62086.1| exonuclease RexA [Streptococcus agalactiae 18RS21] Length = 770 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 29/218 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++V+R+L LL +L T T AA E+ Sbjct: 29 TPEQIEAIYTFGNNVLVSASAGSGKTFVMVERILDKLLRGVPIDSLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I + ++ + L L + T+ AF Sbjct: 89 ERLEKKI-------------------NESLKSAESDDLKQFLTQQLVGIQTADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-E 197 + I+ Q+ I+ F I D+ + + E + M N +F +++ Sbjct: 130 TQKIVNQYGYTLGISPIFRILQDKNEQDVIKNEVYADLFSDYMTGKNAA---SFIKLVKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 S + +++ K+ F S ++ ++ Sbjct: 187 FSGNRKDSKAFREMV-----YKVYAFSQSTDNPKRWMQ 219 >gi|225850544|ref|YP_002730778.1| ATP-dependent DNA helicase PcrA [Persephonella marina EX-H1] gi|225645384|gb|ACO03570.1| ATP-dependent DNA helicase PcrA [Persephonella marina EX-H1] Length = 696 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 74/196 (37%), Gaps = 41/196 (20%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLT 69 E I+ +++ ++E +L V A AGSGKT ++ +++ L+ P +L +T Sbjct: 1 MEVIEGLNEKQAEAVLYF--GSPLLVLAGAGSGKTKVITHKIIFLIKELEIPLDRILAIT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA+EM RV + Sbjct: 59 FTNKAASEMKERVKNYLGLEEEPQ------------------------------------ 82 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + T H+FC +++ + F I DEE SKK I++ K + L E +K Sbjct: 83 --WISTFHSFCVKVLRSEAESIGYSRDFIIYDEEDSKKAIKDVVKELNLNSDLYKPERVK 140 Query: 190 KAFYEILEISNDEDIE 205 F I + +D +E Sbjct: 141 HIFSNIKQSLDDTVLE 156 >gi|295099324|emb|CBK88413.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Eubacterium cylindroides T2-87] Length = 492 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 31/222 (13%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAA 75 + +K++Q ++ VSA+AGSGKT +LV+R+ +L L+ +L +T T+ AA Sbjct: 1 MPFSKAQQQAIDLRNKNILVSASAGSGKTSVLVERLCKLVLVDKISIDRILAMTFTEDAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + + A + + + L + T Sbjct: 61 NEMKDRLKKRLQAETQTD--------------------------YIQSQLALLETASICT 94 Query: 136 IHAFCEAIMQQFPLEANITSHF--AIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 I FC +I++ + + I+ ++A Q+ K +A SI ++ +LK F Sbjct: 95 IDGFCLSIVKNYYYKIPISYKMSKSVASSAQANKAFLDAYNEACNSINTNDFVKLKLFFS 154 Query: 194 EILEISND--EDIETLISDIISNRTALKLIFFFFSYLWRRKI 233 + + +D +I LI+ +S + + I + K Sbjct: 155 SLGKTEDDILSNIRDLINVAMSKPDSNEWIRSLMNKPCSEKT 196 >gi|187931065|ref|YP_001891049.1| DNA helicase II [Francisella tularensis subsp. mediasiatica FSC147] gi|187711974|gb|ACD30271.1| DNA helicase II [Francisella tularensis subsp. mediasiatica FSC147] Length = 740 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 43/190 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q R+A + A AGSGKT +L R+ L +L +T T AA Sbjct: 8 LGLNPEQQKATLLEDRNALILAGAGSGKTKVLTSRIAYLCRDKGVSIENILAVTFTNKAA 67 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ RV +++ + G+ + T Sbjct: 68 KEIQQRVEKMLGISTF--------------------------------------GMWIGT 89 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H ++++ E + +F I D+++ +L K + ++ LD+ + K Sbjct: 90 FHGIAHRLLRKHTHELGLDKNFRILDQDEQAQL----VKKVINNLDLDDKKYPPKLLQNF 145 Query: 196 LEISNDEDIE 205 + D+ I Sbjct: 146 INKQKDKAIR 155 >gi|29346067|ref|NP_809570.1| ATP-dependent DNA helicase [Bacteroides thetaiotaomicron VPI-5482] gi|29337961|gb|AAO75764.1| ATP-dependent DNA helicase [Bacteroides thetaiotaomicron VPI-5482] Length = 788 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 56/163 (34%), Gaps = 38/163 (23%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + I + Q A + V A AGSGKT +L ++ LL P +L LT T Sbjct: 4 NYIEELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + M +AR+L + Sbjct: 64 AAREMKDRIARQVG--------------------------MERARYL-----------WM 86 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ TS F I D SK LI K Sbjct: 87 GTFHSVFSRILRAEAKYIGFTSQFTIYDSADSKSLIRSIIKEM 129 >gi|30249444|ref|NP_841514.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718] gi|30138807|emb|CAD85384.1| UvrD/REP helicase [Nitrosomonas europaea ATCC 19718] Length = 744 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 65/193 (33%), Gaps = 44/193 (22%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L++ EQL A +SA V A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LLTDLNPEQLEAVTWSHQSALVLAGAGSGKTRVLTTRIAYLLQSGRTRPQNILAVTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ + V Sbjct: 64 AAREMVARIGAMLPV--------------------------------------NTRAMWV 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ +A + F I D +I K L LD + Sbjct: 86 GTFHGLCHRVLRAHHEDAGLPQAFQILDMADQLAVI----KRVLKERSLDEKMLPPRQLQ 141 Query: 194 EILEISNDEDIET 206 + + +E + Sbjct: 142 WFINNAKEEGLRA 154 >gi|13476580|ref|NP_108150.1| ATP-dependent DNA helicase [Mesorhizobium loti MAFF303099] gi|14027342|dbj|BAB53611.1| ATP-dependent DNA helicase [Mesorhizobium loti MAFF303099] Length = 697 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 67/179 (37%), Gaps = 34/179 (18%) Query: 3 YHNSFQEHSETIDLISQTKSEQLLASDPT-----RSAWVSANAGSGKTHILVQRVLRLLL 57 + ++F E + +++ Q A + V A AGSGKT+ L RV L++ Sbjct: 6 HDSTFLESAVAPAYLARLNDAQRQAVEHGDGKIAGPLLVIAGAGSGKTNTLAHRVAHLIV 65 Query: 58 ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKA 117 A P +L +T ++ AA+EM+ RV I +++ +T Sbjct: 66 KGADPRRILLMTFSRRAASEMAKRVERIAGEVLGRDAAVITDALT--------------- 110 Query: 118 RHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++ + LE + F I D E S L+ A+ Sbjct: 111 --------------WAGTFHGIGARLLRDYALEIGLDPAFTIHDREDSADLMNLARHEL 155 >gi|327463228|gb|EGF09549.1| exonuclease RexA [Streptococcus sanguinis SK1] Length = 1224 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++VQR++ +L S L T T AA E+ Sbjct: 29 TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R + K G+ ++D + + L L + T+ AF Sbjct: 89 ER-------------------LEKELGQALKEADSPEFKQHLAQQLADLPNADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ ++ + +F I + L E + E + F +++ Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDRYY---DSERQALFSSLVKN 186 Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 + D+ R + ++ F S ++ +E++ Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWLEETFL 223 >gi|302342252|ref|YP_003806781.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075] gi|301638865|gb|ADK84187.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075] Length = 741 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 72/197 (36%), Gaps = 41/197 (20%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 +++ R V A AGSGKT LV RV ++ P +L LT T+ AAAEM Sbjct: 13 NPAQRQAVELLGRPVLVIAGAGSGKTRTLVHRVAHVVELGVDPREILLLTFTRRAAAEM- 71 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 +++AR L GG T H+ Sbjct: 72 ----------------------------------LARARQLNPACAAVGGG----TFHSL 93 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C +++++ A + +F I D ++ L+ D + + ++ S Sbjct: 94 CNRLLRRYAARAGLMPNFTIIDPADAEHLVRGCIDELGLKGGKDERFPKPRTVFGLISAS 153 Query: 200 NDEDIETLISDIISNRT 216 ++E ++++I R Sbjct: 154 --RNLELSLAELIQTRE 168 >gi|222149095|ref|YP_002550052.1| DNA helicase II [Agrobacterium vitis S4] gi|221736080|gb|ACM37043.1| DNA helicase II [Agrobacterium vitis S4] Length = 858 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 76/202 (37%), Gaps = 43/202 (21%) Query: 6 SFQEHSETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63 + ++ + D ++ EQ A + V A AG+GKT +L R+ +L A PS Sbjct: 68 AARDQNRNPDYLAGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILATGRAFPS 127 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L +T T AA EM RV ++ Sbjct: 128 QILSVTFTNKAAREMKERVGVLVGGAVE-------------------------------- 155 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 G + T H+ ++++ +TS F I D + +LI++ + + LD Sbjct: 156 -----GMPWLGTFHSIGVKLLRRHAELVGLTSDFTILDTDDVVRLIKQ----IIQAEGLD 206 Query: 184 NNEELKKAFYEILEISNDEDIE 205 + K F +++ ++ ++ Sbjct: 207 DKRWPAKMFAGMIDGWKNKGLD 228 >gi|327474835|gb|EGF20240.1| exonuclease RexA [Streptococcus sanguinis SK408] Length = 1224 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++VQR++ +L S L T T AA E+ Sbjct: 29 TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R + K G+ ++D + + L L + T+ AF Sbjct: 89 ER-------------------LEKELGQALKEADSPELKQHLAQQLADLPNADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ ++ + +F I + L E + E + F +++ Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDRYY---DSERQALFSSLVKN 186 Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 + D+ R + ++ F S ++ +E++ Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWLEETFL 223 >gi|229816023|ref|ZP_04446344.1| hypothetical protein COLINT_03076 [Collinsella intestinalis DSM 13280] gi|229808337|gb|EEP44118.1| hypothetical protein COLINT_03076 [Collinsella intestinalis DSM 13280] Length = 950 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 38/165 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D+ + +++ V A AGSGKT +L R+ R++ P +L +T T Sbjct: 79 LVDIDTLNPAQREAVLTTEGPLLVLAGAGSGKTRVLTFRIARMIGDLGIRPWQILAITFT 138 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM R+ ++ G+ Sbjct: 139 NKAAAEMRERLSAMLPDGGMR-------------------------------------GM 161 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HA C ++++ T F I D++ S++++ E Sbjct: 162 WVCTFHAMCVRMLREDADLLGYTGQFTIYDDDDSRRMVREIMAHL 206 >gi|306844312|ref|ZP_07476904.1| DNA helicase II [Brucella sp. BO1] gi|306275384|gb|EFM57125.1| DNA helicase II [Brucella sp. BO1] Length = 858 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q+H E L ++ V A AG+GKT +L R+ +L A+PS +L Sbjct: 37 QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ ++ Sbjct: 97 AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ ++++ N+TS F I D + +LI++ + + LD+ Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEELDDKR 175 Query: 187 ELKKAFYEILEISNDEDI 204 + F +++ ++ Sbjct: 176 WPARTFANMIDGWKNKGF 193 >gi|303228942|ref|ZP_07315752.1| ATP-dependent DNA helicase PcrA [Veillonella atypica ACS-134-V-Col7a] gi|302516356|gb|EFL58288.1| ATP-dependent DNA helicase PcrA [Veillonella atypica ACS-134-V-Col7a] Length = 729 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 60/165 (36%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D ++ + +Q + A AGSGKT +L R+ LL +P +L +T T Sbjct: 4 LLDGLN--REQQQAVQHTEGPLLILAGAGSGKTKVLTVRIAYLLAQGVNPYEILAITFTN 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + + Sbjct: 62 KAAKEMKSRVEGLVGDVA--------------------------------------NRIW 83 Query: 133 VQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+FC ++ + S+F I D S+ +I+ A K+ Sbjct: 84 LSTFHSFCAKFLRFELDNFLGYNSNFTIYDTSDSQVVIKAALKAL 128 >gi|319761999|ref|YP_004125936.1| uvrd/rep helicase [Alicycliphilus denitrificans BC] gi|317116560|gb|ADU99048.1| UvrD/REP helicase [Alicycliphilus denitrificans BC] Length = 796 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 74/226 (32%), Gaps = 50/226 (22%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L+ EQL A P A + A AGSGKT +L R+ LL A P +L +T T Sbjct: 14 LLQGLNPEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLSTGHATPGGILAVTFTNK 73 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ G+ + Sbjct: 74 AAKEMLTRLSAMLPI--------------------------------------NVRGMWI 95 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ A + F I D + A K +D K Sbjct: 96 GTFHGLCNRMLRAHHKLAGLPQSFQILDTQDQLS----AVKRLCKQFNVDEERFPPKQLA 151 Query: 194 EILEISNDEDIETLISDIISN----RTALKLIFFFFSYLWRRKIIE 235 + +E + D+ ++ R ++L + R +++ Sbjct: 152 YFIAGCKEEGLRP--RDVEAHDSDTRKKVELYQLYEEQCQREGVVD 195 >gi|329890022|ref|ZP_08268365.1| DNA helicase II [Brevundimonas diminuta ATCC 11568] gi|328845323|gb|EGF94887.1| DNA helicase II [Brevundimonas diminuta ATCC 11568] Length = 778 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 70/192 (36%), Gaps = 43/192 (22%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D +S EQ A + T V A AG+GKT +L R+ +L A P LL +T T Sbjct: 24 DYLSGLNPEQREAVETTEGPVLVLAGAGTGKTRVLTTRLAHILATGRAKPWELLVVTFTN 83 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I P+ + Sbjct: 84 KAAREMRERIGHLIG---------------------PSSEGLR----------------W 106 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ I+++ + S F I D + ++L+++ L + +D K+ Sbjct: 107 LGTFHSVAAQILRRHAELVGLKSSFTILDTDDQERLLKQ----LLEAANIDTKRFTPKSL 162 Query: 193 YEILEISNDEDI 204 +++ + Sbjct: 163 AHMIDHWKNRGW 174 >gi|329576878|gb|EGG58363.1| hypothetical protein HMPREF9520_01337 [Enterococcus faecalis TX1467] Length = 191 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 51 NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + V T H+ Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + +F I D + K L++ Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 170 >gi|303231497|ref|ZP_07318227.1| ATP-dependent DNA helicase PcrA [Veillonella atypica ACS-049-V-Sch6] gi|302513840|gb|EFL55852.1| ATP-dependent DNA helicase PcrA [Veillonella atypica ACS-049-V-Sch6] Length = 729 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 60/165 (36%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D ++ + +Q + A AGSGKT +L R+ LL +P +L +T T Sbjct: 4 LLDGLN--REQQQAVQHTEGPLLILAGAGSGKTKVLTVRIAYLLAQGVNPYEILAITFTN 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + + Sbjct: 62 KAAKEMKSRVEGLVGDVA--------------------------------------NRIW 83 Query: 133 VQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+FC ++ + S+F I D S+ +I+ A K+ Sbjct: 84 LSTFHSFCAKFLRFELDNFLGYNSNFTIYDTSDSQVVIKAALKAL 128 >gi|148238576|ref|YP_001223963.1| UvrD/REP helicase [Synechococcus sp. WH 7803] gi|147847115|emb|CAK22666.1| UvrD/REP helicase [Synechococcus sp. WH 7803] Length = 795 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 19/174 (10%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + ++ Q A D V A AGSGKT L R+ L+ A P+ +L +T T Sbjct: 1 MSFLAGLNDAQRRAVDHHEGPLLVVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL-ETPGG 130 AA EM R+ ++ S G+ + + R L I E Sbjct: 61 NKAAREMKERLELLLAQRLAQSQY----------GQPWSTLPPVEQRQLRSRIYREVTKE 110 Query: 131 LKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178 L + T HA +++ +F + T F+I DE ++ L++E L Sbjct: 111 LWIGTFHALFARMLRYDIDKFKDSEGLTWTKQFSIYDEADAQSLVKEIVTQELQ 164 >gi|330826182|ref|YP_004389485.1| UvrD/REP helicase [Alicycliphilus denitrificans K601] gi|329311554|gb|AEB85969.1| UvrD/REP helicase [Alicycliphilus denitrificans K601] Length = 796 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 73/224 (32%), Gaps = 46/224 (20%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L+ EQL A P A + A AGSGKT +L R+ LL A P +L +T T Sbjct: 14 LLQGLNPEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLSTGHATPGGILAVTFTNK 73 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ G+ + Sbjct: 74 AAKEMLTRLSAMLPI--------------------------------------NVRGMWI 95 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ A + F I D + A K +D K Sbjct: 96 GTFHGLCNRMLRAHHKLAGLPQSFQILDTQDQLS----AVKRLCKQFNVDEERFPPKQLA 151 Query: 194 EILEISNDEDIETLISDIISN--RTALKLIFFFFSYLWRRKIIE 235 + +E + ++ + R ++L + R +++ Sbjct: 152 YFIAGCKEEGLRPRDVEVHDSDTRKKVELYQLYEEQCQREGVVD 195 >gi|312876019|ref|ZP_07736008.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A] gi|311797217|gb|EFR13557.1| UvrD/REP helicase [Caldicellulosiruptor lactoaceticus 6A] Length = 714 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 39/165 (23%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ + + +Q A V A AGSGKT ++ R+ +L A+P +L +T T Sbjct: 1 MEWLKELNEQQKEAVLSTEGPLLVLAGAGSGKTRVITYRIAYILNMGLANPGNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +++ ++ + Sbjct: 61 NKAADEMKERIKRLVST-------------------------------------QSFSEM 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HA C I++ +++F I D + ++L++E Sbjct: 84 WVSTFHAACARILRMEAHNIGFSNNFVIFDTQDRQQLLKECFDKL 128 >gi|126726603|ref|ZP_01742443.1| DNA helicase II, putative [Rhodobacterales bacterium HTCC2150] gi|126703932|gb|EBA03025.1| DNA helicase II, putative [Rhodobacterales bacterium HTCC2150] Length = 797 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 70/195 (35%), Gaps = 44/195 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLT 69 SE ++ ++ + E + + + A AG+GKT L R+ LL A P+ +L +T Sbjct: 36 SEYLEGLNPAQREAVEQME--GPVLMLAGAGTGKTKALTTRIAHLLATGAARPNEILAVT 93 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV ++ G Sbjct: 94 FTNKAAREMKDRVGGLMGEAVE-------------------------------------G 116 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + T HA C ++++ + S+F I D + +L+++ + + +D Sbjct: 117 MPWLGTFHAICVKLLRRHAELVGLKSNFTILDTDDQIRLLKQ----LIRAENIDEKRWPA 172 Query: 190 KAFYEILEISNDEDI 204 + +++ + Sbjct: 173 RGLANLIDGWKNRAW 187 >gi|78183791|ref|YP_376225.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9902] gi|78168085|gb|ABB25182.1| ATP-dependent DNA helicase, Rep family [Synechococcus sp. CC9902] Length = 798 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 27/178 (15%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + ++ Q A D V A AGSGKT L R+ L+ A P +L +T T Sbjct: 1 MSFLAGLNDAQRRAVDHHQGPLLVVAGAGSGKTRALTHRIAHLIGEHGADPGQILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL--ETPG 129 AA EM R+ + +L+ + + Q +P + + L + + E Sbjct: 61 NKAAREMKERL-----------ELLLAQRLAQSQFGQPWSTLPPVQQRQLRSRIYREITK 109 Query: 130 GLKVQTIHAFCEAIMQQFPLEAN--ITSH-------FAIADEEQSKKLIEEAKKSTLA 178 L + T HA +++ + + F+I DE ++ L++E L Sbjct: 110 ELWIGTFHALFARMLR---FDIDKFRDPDGLTWTKQFSIYDEADAQSLVKEIVTQELQ 164 >gi|262381917|ref|ZP_06075055.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262297094|gb|EEY85024.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 780 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 39/165 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 E ++ +++++ E ++ ++ + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 5 EYLNQLNESQREAVVYNE--GPSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 62 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ I +T L Sbjct: 63 NKAAREMKERIAAITGE-------------------------------------QTARRL 85 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ S+F I D SK L++ K Sbjct: 86 WMGTFHSIFSRILRNEAEHIGYPSNFTIYDATDSKSLLKSIIKEM 130 >gi|188582350|ref|YP_001925795.1| UvrD/REP helicase [Methylobacterium populi BJ001] gi|179345848|gb|ACB81260.1| UvrD/REP helicase [Methylobacterium populi BJ001] Length = 1047 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 7/170 (4%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 S +++ + + S RS V A AGSGKT ++ R+ +L P ++ +T Sbjct: 1 MSSMSKVLNDDGARRDAISLHDRSILVEAGAGSGKTAVMAGRIAAMLAEGVAPRSIAAVT 60 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T+ AA+E+ RV E + D + T+++ P+ + R L Sbjct: 61 FTELAASELLSRVREFVA------DLSVGTIATELRVALPDGLTQTH-RDNLAAASAAID 113 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 + TIH FC+ +++ +P EA+I ++ D + + L Sbjct: 114 EITCSTIHGFCQRLIKPYPAEADIDPGASVMDRNHADFTFLDIVDGWLRE 163 >gi|114766608|ref|ZP_01445560.1| DNA helicase II, putative [Pelagibaca bermudensis HTCC2601] gi|114541148|gb|EAU44201.1| DNA helicase II, putative [Roseovarius sp. HTCC2601] Length = 816 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 74/193 (38%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ + E + D + A AG+GKT L R++ LL++ A P+ +L +T T Sbjct: 27 YLDDLNPAQREAVERLD--GPVLMLAGAGTGKTKALTSRIVHLLVSGKARPNEILSVTFT 84 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ + G Sbjct: 85 NKAAREMKTRVGRLLGQ-------------------------------------QIEGMP 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T HA C ++++ A + S+F I D + +L+++ LA+ +D + Sbjct: 108 WLGTFHAICVKLLRRHAELAGLKSNFTILDTDDQIRLLKQ----LLAANNIDEKRWPARQ 163 Query: 192 FYEILEISNDEDI 204 +++ + Sbjct: 164 LSGLIDHWKNRAW 176 >gi|39998500|ref|NP_954451.1| ATP-dependent DNA helicase PcrA [Geobacter sulfurreducens PCA] gi|39985447|gb|AAR36801.1| ATP-dependent DNA helicase PcrA, putative [Geobacter sulfurreducens PCA] Length = 739 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 77/219 (35%), Gaps = 49/219 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 + +D ++ ++ V A AGSGKT ++V R+ L+ +L +T Sbjct: 1 MKLLDNLN--PPQRAAVLHGEGPLLVLAGAGSGKTRVIVHRIAHLIRERGVPARQILAVT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV +++ L Sbjct: 59 FTNKAAGEMRERVEKLVGGEVPL------------------------------------- 81 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + T H+ C I+++ S FAI D++ S KL++E +A + LD Sbjct: 82 ---IATFHSTCARILRREIHHLGYDSSFAIYDDKDSGKLLKE----VMAGLGLDEKRFPA 134 Query: 190 KAFYEILEISNDEDI--ETLISDIISNRTALKLIFFFFS 226 + ++ + + E L +D + ++ + Sbjct: 135 TSLASAIDDCKNRGLAPEDLPADTFTGEVVGRVYAAYQE 173 >gi|23098214|ref|NP_691680.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831] gi|22776439|dbj|BAC12715.1| ATP-dependent DNA helicase [Oceanobacillus iheyensis HTE831] Length = 741 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 76/218 (34%), Gaps = 41/218 (18%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78 K +Q + A AGSGKT +L R+ L+ + P +L +T T AA EM Sbjct: 13 NKQQQEAVRHTEGPLLIMAGAGSGKTRVLTHRIAYLMGEKDVSPRNILAITFTNKAAREM 72 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + V T H+ Sbjct: 73 KERVSKLVGPQGEY--------------------------------------MWVSTFHS 94 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEELKKAFYEILE 197 C I+++ +++F+I D +I++ K+ + D L + E Sbjct: 95 MCVRILRRDIDRIGYSTNFSILDSSDQLSVIKQVLKNLNIDPKKFDPRAMLGQISTAKNE 154 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 + +E+ D S R ++ + L + + ++ Sbjct: 155 LITEEEYSKNAGDFFS-RQVAQVYEGYQKMLRKNQSLD 191 >gi|290889814|ref|ZP_06552901.1| hypothetical protein AWRIB429_0291 [Oenococcus oeni AWRIB429] gi|290480424|gb|EFD89061.1| hypothetical protein AWRIB429_0291 [Oenococcus oeni AWRIB429] Length = 1186 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 80/193 (41%), Gaps = 23/193 (11%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 ++A P + V+A+AGSGKT +L++ V + LL+ L T T AAA EM Sbjct: 5 KNQRAVIAHIPDHNLLVAASAGSGKTTVLIEHVYQQLLSGKSIDRFLISTFTDAAALEMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 +R+ + I A + L + L L + T+ +F Sbjct: 65 NRLEKRIRAGITEEEGQL--------------------KRHLQEQLLLLNSAAIGTLDSF 104 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I++++ + + + D+ + L+++ T + ++E+ + Sbjct: 105 SLRIIERYYSVIGLDPRYRMLADQTEKNLLVKDVLDDTFDEMY--HDEKFLRLLNNFSSA 162 Query: 199 SNDEDIETLISDI 211 S+D+D++ L+ + Sbjct: 163 SHDQDLKNLVIKL 175 >gi|90415401|ref|ZP_01223335.1| DNA helicase II [marine gamma proteobacterium HTCC2207] gi|90332724|gb|EAS47894.1| DNA helicase II [marine gamma proteobacterium HTCC2207] Length = 723 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 69/195 (35%), Gaps = 45/195 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 +D ++ + E + + V A AGSGKT +LV R+ L + N P ++L +T T Sbjct: 6 ILDKLNAAQEE--AVTSDKQHLLVLAGAGSGKTRVLVHRIAWKLQVDNLSPYSILAVTFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ E++ + G+ Sbjct: 64 NKAAREMRERIDELMGM--------------------------------------SLRGM 85 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H +++ + + +F I D + +L K + S+ LD K Sbjct: 86 WVGTFHGLAHRLLKAHWKDVKLPENFQILDSDDQLRL----VKRVMRSMDLDEQRWPPKQ 141 Query: 192 FYEILEISNDEDIET 206 + DE + Sbjct: 142 AQWWINGQKDEGLRA 156 >gi|15671986|ref|NP_266160.1| ATP-dependent exonuclease subunit a [Lactococcus lactis subsp. lactis Il1403] gi|81538647|sp|Q9CJI9|ADDA_LACLA RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|12722839|gb|AAK04102.1|AE006239_4 subunit A of ATP-dependent exonuclease [Lactococcus lactis subsp. lactis Il1403] Length = 1203 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 80/230 (34%), Gaps = 35/230 (15%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + T + ++ VSA+AGSGKT ++ QR++ + L T TK AA+ Sbjct: 4 VKLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAAS 63 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R+ + S + L L+ + T+ Sbjct: 64 ELRMRLERDLKKARQESSD-------------------ENQACRLTLALQNLSNADIGTM 104 Query: 137 HAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNN------EELK 189 +F + + + NI +F I D+ +S + +E + + S + ++ E+ + Sbjct: 105 DSFTQKLTKTNFNRVNIDPNFRILADQTESDLIRQEVFEQLVESYLSGDDGLNISKEKFE 164 Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + + N + ++ I F + K +E Sbjct: 165 ELIKNFSKDRNIAGFQKVVYTI---------YRFASATENPIKWLENQFL 205 >gi|88797135|ref|ZP_01112725.1| DNA helicase II [Reinekea sp. MED297] gi|88780004|gb|EAR11189.1| DNA helicase II [Reinekea sp. MED297] Length = 720 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 70/194 (36%), Gaps = 43/194 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 T+ L + + + + + V A AGSGKT +L R+ L+ A A P ++L +T Sbjct: 1 MHTLQLDTLNPEQHAAVTSDSPNLLVLAGAGSGKTRVLTHRIGWLIAAGLASPYSVLAVT 60 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV ++ A S Sbjct: 61 FTNKAAREMKSRVEALLEAPSQ-------------------------------------- 82 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 GL + T H +++ +A + HF + D + +L K + + ++++ Sbjct: 83 GLWIGTFHGLAHRLLKAHWQQAKLPQHFQVMDSDDQLRL----VKRIINEMNIEDDRIQP 138 Query: 190 KAFYEILEISNDED 203 K + DE Sbjct: 139 KQVQWFINGQKDEG 152 >gi|322373657|ref|ZP_08048193.1| ATP-dependent nuclease subunit A [Streptococcus sp. C150] gi|321278699|gb|EFX55768.1| ATP-dependent nuclease subunit A [Streptococcus sp. C150] Length = 1217 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 27/221 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++V+R+L ++ L T T AA E+ Sbjct: 29 TPEQIEAIYSNGSNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + +T ++ + + + R L + G + T+ AF Sbjct: 89 ERLEKRLT-------------------EQLGQVETDEERAFLSDQIAKIGTADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ Q+ ++ F I D + + E M + +L + Sbjct: 130 TQKLVNQYGYLLGVSPIFRIMTDPAEQTLMKNEVYADLFNDFMQGKDAQLFQKLVR--NF 187 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + + D++ + + F + K + ++L Sbjct: 188 AGNGKTSKAFRDLVYD-----VYNFSQATAGPEKWLRQNLL 223 >gi|257790997|ref|YP_003181603.1| UvrD/REP helicase [Eggerthella lenta DSM 2243] gi|257474894|gb|ACV55214.1| UvrD/REP helicase [Eggerthella lenta DSM 2243] Length = 1165 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 70/188 (37%), Gaps = 39/188 (20%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCL 68 ++L + T ++ VSA AGSGKT L QR+ LL + P +L + Sbjct: 1 MNLSTCTPGQRQSIEHVRGPLLVSAGAGSGKTFTLTQRIAYALLPESGPAASGVDEVLAI 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T+ AAAE+ RV + +A L L Sbjct: 61 TFTEKAAAEIKARVKRTL-----------------------------RAEGLAEEALRV- 90 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 G + TIH C I++ L+ + F I + + EA + + D+N+ + Sbjct: 91 DGAWISTIHGMCARILRAHALDLGLDPAFGIMGDAE----RAEAVADAIDGALGDDNDII 146 Query: 189 KKAFYEIL 196 + Y L Sbjct: 147 ARGSYAAL 154 >gi|298507445|gb|ADI86168.1| ATP-dependent DNA helicase UvrD/REP [Geobacter sulfurreducens KN400] Length = 739 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 77/219 (35%), Gaps = 49/219 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 + +D ++ ++ V A AGSGKT ++V R+ L+ +L +T Sbjct: 1 MKLLDNLN--PPQRAAVLHGEGPLLVLAGAGSGKTRVIVHRIAHLIRERGVPARQILAVT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV +++ L Sbjct: 59 FTNKAAGEMRERVEKLVGGEVPL------------------------------------- 81 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + T H+ C I+++ S FAI D++ S KL++E +A + LD Sbjct: 82 ---IATFHSTCARILRREIHHLGYDSSFAIYDDKDSGKLLKE----VMAGLGLDEKRFPA 134 Query: 190 KAFYEILEISNDEDI--ETLISDIISNRTALKLIFFFFS 226 + ++ + + E L +D + ++ + Sbjct: 135 TSLASAIDDCKNRGLAPEDLPADTFTGEVVGRVYAAYQE 173 >gi|15965897|ref|NP_386250.1| DNA helicase II protein [Sinorhizobium meliloti 1021] gi|307308207|ref|ZP_07587916.1| UvrD/REP helicase [Sinorhizobium meliloti BL225C] gi|307319674|ref|ZP_07599099.1| UvrD/REP helicase [Sinorhizobium meliloti AK83] gi|15075166|emb|CAC46723.1| Probable DNA helicase II [Sinorhizobium meliloti 1021] gi|306894605|gb|EFN25366.1| UvrD/REP helicase [Sinorhizobium meliloti AK83] gi|306901205|gb|EFN31811.1| UvrD/REP helicase [Sinorhizobium meliloti BL225C] Length = 857 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 77/202 (38%), Gaps = 43/202 (21%) Query: 6 SFQEHSETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63 + ++ ++ D +S EQ A + V A AG+GKT +L R+ +L A+PS Sbjct: 33 AARDKAQRPDYVSGLNPEQREAVEALEGPVLVLAGAGTGKTRVLTTRIAHILSTGRAYPS 92 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L +T T AA EM R+ ++ Sbjct: 93 QILAVTFTNKAAREMKERIGVLVGHAVE-------------------------------- 120 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 G + T H+ ++++ + S F I D + +LI++ + + LD Sbjct: 121 -----GMPWLGTFHSIGVKLLRRHAELVGLRSDFTILDTDDVVRLIKQ----LIQAEGLD 171 Query: 184 NNEELKKAFYEILEISNDEDIE 205 + K F +++ ++ ++ Sbjct: 172 DKRWPAKQFAGMIDTWKNKGLD 193 >gi|327461179|gb|EGF07512.1| exonuclease RexA [Streptococcus sanguinis SK1057] Length = 1224 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++VQR++ +L S L T T AA E+ Sbjct: 29 TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R + K GK +++ + + L L + T+ AF Sbjct: 89 ER-------------------LEKELGKALKEAESPELKQHLAQQLADLPNADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ ++ + +F I + L E + E + F +++ Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDRYY---DSERQALFSRLVKN 186 Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 + D+ R + ++ F S ++ +E++ Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWLEETFL 223 >gi|332109888|gb|EGJ10516.1| ATP-dependent DNA helicase UvrD [Rubrivivax benzoatilyticus JA2] Length = 784 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 73/224 (32%), Gaps = 46/224 (20%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L+ EQL A P A + A AGSGKT +L R+ LL N P +L +T T Sbjct: 8 LLRNLNPEQLAAVTLPAVPALILAGAGSGKTRVLTTRIAWLLATNQVSPGGVLAVTFTNK 67 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ G+ + Sbjct: 68 AAKEMLTRLGTMLPFAVR--------------------------------------GMWI 89 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ A + F I D A K + ++ LD + K Sbjct: 90 GTFHGLCNRLLRAHWKAAGLPQSFQILDSGDQLS----AVKRVVKAMNLDEERFVPKQVA 145 Query: 194 EILEISNDEDIETLISDIISN--RTALKLIFFFFSYLWRRKIIE 235 + +E + R +++ + R +++ Sbjct: 146 WFIAAQKEEGRRPAAVEAFDEHTRKLVQVYEAYEEQCRREGVVD 189 >gi|256113967|ref|ZP_05454750.1| DNA helicase II [Brucella melitensis bv. 3 str. Ether] gi|265995308|ref|ZP_06107865.1| UvrD/REP helicase [Brucella melitensis bv. 3 str. Ether] gi|262766421|gb|EEZ12210.1| UvrD/REP helicase [Brucella melitensis bv. 3 str. Ether] Length = 858 Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q+H E L ++ V A AG+GKT +L R+ +L A+PS +L Sbjct: 37 QQHGEPDYLKGLNPKQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ ++ Sbjct: 97 AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ ++++ N+TS F I D + +LI++ + + LD+ Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175 Query: 187 ELKKAFYEILEISNDEDI 204 + F +++ ++ Sbjct: 176 WPARTFANMIDGWKNKGF 193 >gi|225852895|ref|YP_002733128.1| ATP-dependent DNA helicase PcrA [Brucella melitensis ATCC 23457] gi|256045044|ref|ZP_05447945.1| DNA helicase II [Brucella melitensis bv. 1 str. Rev.1] gi|256263623|ref|ZP_05466155.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9] gi|260565357|ref|ZP_05835841.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M] gi|265991470|ref|ZP_06104027.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. Rev.1] gi|225641260|gb|ACO01174.1| ATP-dependent DNA helicase pcrA [Brucella melitensis ATCC 23457] gi|260151425|gb|EEW86519.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. 16M] gi|263002254|gb|EEZ14829.1| UvrD/REP helicase [Brucella melitensis bv. 1 str. Rev.1] gi|263093675|gb|EEZ17680.1| UvrD/REP helicase [Brucella melitensis bv. 2 str. 63/9] gi|326409437|gb|ADZ66502.1| ATP-dependent DNA helicase PcrA [Brucella melitensis M28] gi|326539143|gb|ADZ87358.1| ATP-dependent DNA helicase pcrA [Brucella melitensis M5-90] Length = 858 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q+H E L ++ V A AG+GKT +L R+ +L A+PS +L Sbjct: 37 QQHGEPDYLKGLNPKQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ ++ Sbjct: 97 AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ ++++ N+TS F I D + +LI++ + + LD+ Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175 Query: 187 ELKKAFYEILEISNDEDI 204 + F +++ ++ Sbjct: 176 WPARTFANMIDGWKNKGF 193 >gi|315924258|ref|ZP_07920482.1| ATP-dependent DNA helicase PcrA [Pseudoramibacter alactolyticus ATCC 23263] gi|315622419|gb|EFV02376.1| ATP-dependent DNA helicase PcrA [Pseudoramibacter alactolyticus ATCC 23263] Length = 736 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D +++ + E LA++ + A AGSGKT ++ R+ +L A PS +L +T T Sbjct: 3 LLDGLNEQQREAALATE--GPLLILAGAGSGKTRTIIHRIAYILEQGLAWPSQILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ + + Sbjct: 61 NKAAGEMRDRIA--------------------------------------AMDIPETNRI 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T HA C IM+ +F I D + K+L ++ K Sbjct: 83 WMYTFHAMCARIMRMHAKLLGYGDNFVIYDTDDQKRLYKQIAKEL 127 >gi|284043266|ref|YP_003393606.1| UvrD/REP helicase [Conexibacter woesei DSM 14684] gi|283947487|gb|ADB50231.1| UvrD/REP helicase [Conexibacter woesei DSM 14684] Length = 1184 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 35/191 (18%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSH 80 SEQ A + ++ANAGSGKT ++ +R +R +L + +L +T T+ AA+E+ Sbjct: 9 SEQRAAIEHAGGLLLTANAGSGKTSVMAERFVRAVLHEGVEVTRILAITFTEKAASELKE 68 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 RV A +AR G V TIH FC Sbjct: 69 RVRRRFEALGEP----------------------ERAR--------ATEGAWVSTIHGFC 98 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ PL A I F++ DE +++L + + EE A E++ Sbjct: 99 ARLLRTHPLAAGIDPRFSVLDEHGARQL----AVGAFDAALDALAEEHGTAALELIAAYR 154 Query: 201 DEDIETLISDI 211 D+ + I D+ Sbjct: 155 PADLRSAILDV 165 >gi|209876554|ref|XP_002139719.1| UvrD/REP helicase domain-containing protein [Cryptosporidium muris RN66] gi|209555325|gb|EEA05370.1| UvrD/REP helicase domain-containing protein [Cryptosporidium muris RN66] Length = 985 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 20/190 (10%) Query: 23 EQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 EQ A D P S + A GSGKT + R+++ L+ P +L LT TK AA E+ Sbjct: 54 EQKKAVDVPPESSLLIVAGPGSGKTATITARIIKFLIEGYTP--ILALTFTKKAANELKS 111 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ I+ K+ + + +SK + + ++ T L + TIH+FC Sbjct: 112 RI--------NVAYSSSLKSISIESTKRNSVNHISKNSYNISSLSLTDKDLFIGTIHSFC 163 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++Q+ + S +AD+E K+++ + K A L S Sbjct: 164 WKLLKQYGTAIGLPSKIEVADKEMMLKILKLCLTEVMNI--------SKAAVASQLSASK 215 Query: 201 DEDIETLISD 210 E ++ L+SD Sbjct: 216 LESLDDLLSD 225 >gi|91774719|ref|YP_544475.1| ATP-dependent DNA helicase UvrD [Methylobacillus flagellatus KT] gi|91708706|gb|ABE48634.1| ATP-dependent DNA helicase UvrD [Methylobacillus flagellatus KT] Length = 731 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 80/224 (35%), Gaps = 46/224 (20%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D +++ + E + P +SA + A AGSGKT +L R+ L+ P +L +T T Sbjct: 11 LLDGLNEKQLE--AVTLPHQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPHGILSVTFT 68 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ G+ Sbjct: 69 NKAAKEMLTRLGAMLPI--------------------------------------NIRGM 90 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 T H C +++ EA + F I D A K + ++ +D+ + K Sbjct: 91 WAGTFHGLCNRLLRAHHREAELPPTFQILDTADQLS----AIKRVMKAMNIDDEKFPPKQ 146 Query: 192 FYEILEISNDEDIETLISDII-SNRTALKLIFFFFSYLWRRKII 234 + +E + D S+ ++ IF + +R+ + Sbjct: 147 VLGYINSCKEEGLRAYAVDAYDSHSQRMREIFEEYDKQCQREGV 190 >gi|50955506|ref|YP_062794.1| ATP-dependent DNA helicase II [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951988|gb|AAT89689.1| ATP-dependent DNA helicase II [Leifsonia xyli subsp. xyli str. CTCB07] Length = 833 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 66/175 (37%), Gaps = 41/175 (23%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66 D ++ +++ A ++ + A AGSGKT +L +R+ L+ + A PS +L Sbjct: 40 NASQRLFDGLN--PQQRIAAEYRGQALLIVAGAGSGKTSVLTRRIAGLIESREAWPSEIL 97 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM RV +++ + Sbjct: 98 AITFTNKAANEMRERVEQLLGGRAQ----------------------------------- 122 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 G+ + T H+ C I+++ T F I D S+ L++ K A + Sbjct: 123 ---GMWISTFHSACVRILRREAETIGKTQSFTIYDSGDSRALLKRIVKELDADTL 174 >gi|116490406|ref|YP_809950.1| DNA helicase/exodeoxyribonuclease V, subunit A [Oenococcus oeni PSU-1] gi|122277405|sp|Q04GY7|ADDA_OENOB RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|116091131|gb|ABJ56285.1| DNA helicase/exodeoxyribonuclease V, subunit A [Oenococcus oeni PSU-1] Length = 1186 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 80/193 (41%), Gaps = 23/193 (11%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 ++A P + V+A+AGSGKT +L++ V + LL+ L T T AAA EM Sbjct: 5 KNQRAVIAHIPDHNLLVAASAGSGKTTVLIEHVYQQLLSGKSIDRFLISTFTDAAALEMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 +R+ + I A + L + L L + T+ +F Sbjct: 65 NRLEKRIRAGITEEEGQL--------------------KRHLQEQLLLLNSAAIGTLDSF 104 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I++++ + + + D+ + L+++ T + ++E+ + Sbjct: 105 SLRIIERYYSVIGLDPRYRMLADQTEKNLLVKDVLDDTFDEMY--HDEKFLRLLNNFSSA 162 Query: 199 SNDEDIETLISDI 211 S+D+D++ L+ + Sbjct: 163 SHDQDLKNLVIKL 175 >gi|326390898|ref|ZP_08212449.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter ethanolicus JW 200] gi|325993046|gb|EGD51487.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter ethanolicus JW 200] Length = 711 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 55/160 (34%), Gaps = 40/160 (25%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76 + ++ + A AGSGKT +L R+ L+ PS +L +T T AA Sbjct: 7 NLNDKQREAVMTTEGPLLILAGAGSGKTRVLTHRIAYLIKEKKVSPSNILAITFTNKAAE 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV +++ G L V T Sbjct: 67 EMKTRVEDLLGYI---------------------------------------GDLWVSTF 87 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ C I+++ + +F I D K LI+E K Sbjct: 88 HSACVRILRRDIDKIGYDRNFVIFDTTDQKALIQECLKEL 127 >gi|229823253|ref|ZP_04449322.1| hypothetical protein GCWU000282_00551 [Catonella morbi ATCC 51271] gi|229787419|gb|EEP23533.1| hypothetical protein GCWU000282_00551 [Catonella morbi ATCC 51271] Length = 798 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 69/185 (37%), Gaps = 43/185 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ ++A AGSGKT +L R+ L+ +P +L +T T AAAEM Sbjct: 17 NSKQREAVLTTEGPVLIAAGAGSGKTRVLTHRIAYLIQERQVNPWNILAITFTNKAAAEM 76 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ E + V T HA Sbjct: 77 RERVQRLVG--------------------------------------EEASSIWVATFHA 98 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C I+++ +F I D+ + + L+++ L + LD+++ K +++ Sbjct: 99 MCARILRREIETLGYAKNFTIIDQGEQQTLMKQ----VLRDLNLDSDQYNYKDLLWVIDA 154 Query: 199 SNDED 203 + ++ Sbjct: 155 AKNQG 159 >gi|171779650|ref|ZP_02920606.1| hypothetical protein STRINF_01487 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281752|gb|EDT47186.1| hypothetical protein STRINF_01487 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 1208 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 81/228 (35%), Gaps = 41/228 (17%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++V+R++ +L L T T AA E+ Sbjct: 29 TPEQIEAIYSYGNNILVSASAGSGKTFVMVERIIDKILRGITVDRLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ + K+ + + L L + T+ AF Sbjct: 89 ERLEKKIS-------------------QALQKATDNDLKTYLNEQLLALQTADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 + ++ Q+ I+ F I ++ + L++ N+ F + + Sbjct: 130 TQKLVNQYGYTLGISPTFRIMTDKSEQDLVK--------------NDVFADLFADYMTGQ 175 Query: 200 NDEDIETLISDIISNRTA--------LKLIFFFFSYLWRRKIIEKSLW 239 N + L+ + NR K+ F + +K + + Sbjct: 176 NQDSFRKLVRNFSGNRKDSSAFRGIVYKIYDFSQATDNPKKWLAEVFL 223 >gi|299535245|ref|ZP_07048569.1| ATP-dependent DNA helicase pcrA [Lysinibacillus fusiformis ZC1] gi|298729366|gb|EFI69917.1| ATP-dependent DNA helicase pcrA [Lysinibacillus fusiformis ZC1] Length = 750 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 66/188 (35%), Gaps = 42/188 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L ++ + A AGSGKT +L R+ L++ +PS +L +T T A Sbjct: 9 LAGMNPEQERAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLVIEKEVYPSKILAITFTNKA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ I+ T + V Sbjct: 69 AREMRDRIDGILGNG-------------------------------------TGDSMWVS 91 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C I+++ + I+ +F+I D +I K+ + +D +A Sbjct: 92 TFHSMCVRILRRNIDQLGISRNFSILDSTDQLSVI----KNVMKEENIDPKRFEPRAILN 147 Query: 195 ILEISNDE 202 + + +E Sbjct: 148 AISAAKNE 155 >gi|150020318|ref|YP_001305672.1| UvrD/REP helicase [Thermosipho melanesiensis BI429] gi|149792839|gb|ABR30287.1| UvrD/REP helicase [Thermosipho melanesiensis BI429] Length = 1003 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 94/219 (42%), Gaps = 35/219 (15%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH------PSTLLCLTHTKAAAAEMSH 80 D ++ ++SA+AG+GKT+ + +++L ++ T TK AAAEM Sbjct: 7 IKDINKNYFISASAGTGKTYTITHFYVKILSEYEKQNYPEIIDRIVVTTFTKKAAAEMKE 66 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ + N K ++ L + + TI +FC Sbjct: 67 RIFKLV--------------------EPHNSPYWHKVKNYLPRAI-------ISTIDSFC 99 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 + ++++ + ANI +F I + + KLI+ A TL + + K + Sbjct: 100 QRLLREENINANIDPNFTIISDLKMSKLIDRAVFLTL-KLTFQLYDFGKTNVRLNISKHR 158 Query: 201 DEDIETLISDIISNRTALKLIFFFFSYLWR-RKIIEKSL 238 E+IE L+ + + +K +F + + KI++++L Sbjct: 159 KENIEKLLEKLKDVKEGIKELFNIYKSINEIEKILQETL 197 >gi|221234533|ref|YP_002516969.1| DNA helicase II [Caulobacter crescentus NA1000] gi|220963705|gb|ACL95061.1| DNA helicase II [Caulobacter crescentus NA1000] Length = 811 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ ++ V A AG+GKT +L R+ +L A P +L +T T Sbjct: 45 YLDGLN--PEQREAVETTEGPLLVLAGAGTGKTRVLTTRLAHILATGRARPWEILAVTFT 102 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ II P + Sbjct: 103 NKAAREMRERITHIIG---------------------PEAEGLR---------------- 125 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ I+++ + S++ I D + +++L+++ + + +D + Sbjct: 126 WLGTFHSVAAQILRRHAELIGLKSNYTIIDTDDNERLLKQ----LIEAENIDAKRWTPRI 181 Query: 192 FYEILEISNDEDI 204 +I++ + Sbjct: 182 LSQIIDGWKNRGW 194 >gi|110634338|ref|YP_674546.1| ATP-dependent DNA helicase Rep [Mesorhizobium sp. BNC1] gi|110285322|gb|ABG63381.1| ATP-dependent DNA helicase, Rep family [Chelativorans sp. BNC1] Length = 876 Score = 129 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 42/186 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 ++L V A AG+GKT +L R+ +L A+PS +L +T T AA EM Sbjct: 46 NPEQRLAVETTEGPVLVLAGAGTGKTRVLTTRIAHILATGRAYPSQILAVTFTNKAAREM 105 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ ++ G + T H+ Sbjct: 106 KTRIGVLVGQAIE-------------------------------------GMPWLGTFHS 128 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 ++++ A +TS F I D + +L+++ + + LD+ + +++ Sbjct: 129 IGVKLLRRHAELAGLTSSFTILDTDDQVRLLKQ----LIQAEALDDKRWPARQLAMMIDG 184 Query: 199 SNDEDI 204 ++ + Sbjct: 185 WKNKGL 190 >gi|258510954|ref|YP_003184388.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477680|gb|ACV57999.1| UvrD/REP helicase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 705 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 77/211 (36%), Gaps = 49/211 (23%) Query: 12 ETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69 + D++ EQ A + + V A AGSGKT +L +R+ L+ A +L +T Sbjct: 3 DVTDILRGLNPEQRDAVTTTSGPLLVVAGAGSGKTSVLTRRIAYLIAHAGVAVHEILAIT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ ++I + Sbjct: 63 FTNKAAREMKTRIRDLIGPRA--------------------------------------D 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 L + T H+ C I+++ +F I D E + L+++ L + D Sbjct: 85 DLWMGTFHSICVRILRREADRLGYQPNFTILDSEDQEALVQQC----LLDLGYDLKTHDA 140 Query: 190 KAFYEILEISNDEDIETLI-----SDIISNR 215 ++ + +E ++ SD+I++R Sbjct: 141 RSIKHRISQWKNEGATRVVNESNPSDLIADR 171 >gi|313900250|ref|ZP_07833746.1| putative ATP-dependent nuclease subunit A [Clostridium sp. HGF2] gi|312954959|gb|EFR36631.1| putative ATP-dependent nuclease subunit A [Clostridium sp. HGF2] Length = 1069 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 79/206 (38%), Gaps = 31/206 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 + + + VSA+AGSGKT +L+ R++ L++ + ++L +T T+AA Sbjct: 1 MPEWNPMQLKAIQTKEHNILVSASAGSGKTTVLIARLMDLVMKDHVSIDSILAMTFTEAA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ + K + + + + L + Sbjct: 61 ANEMKKRLATELQ-------------------KALTAARTEEEKSYITRQLTGIQTAHIS 101 Query: 135 TIHAFCEAIMQQFPLEANITSH--FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 TIH+FC +I+Q++ + +I D +++ L + +F Sbjct: 102 TIHSFCLSIIQEYYYILGLDPQRIKSIMDNGTMVLFQQQS----LEEAFAKQYQLQDASF 157 Query: 193 YEI-----LEISNDEDIETLISDIIS 213 ++ NDE + T+I ++ Sbjct: 158 LQLCQMFSARAENDEALRTMIMNLAG 183 >gi|218261884|ref|ZP_03476569.1| hypothetical protein PRABACTJOHN_02240 [Parabacteroides johnsonii DSM 18315] gi|218223732|gb|EEC96382.1| hypothetical protein PRABACTJOHN_02240 [Parabacteroides johnsonii DSM 18315] Length = 261 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 39/165 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 E + +++++ E ++ +D + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 24 EYLKQLNESQREAVVYTD--GPSLVVAGAGSGKTRVLTYKIAYLLRQGLPPQSILALTFT 81 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ + L+DE T L Sbjct: 82 NKAAREMKERI-------ASLTDE------------------------------RTARRL 104 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ S+F I D SK L+ K Sbjct: 105 WMGTFHSIFSRILRSEAERIGYPSNFTIYDATDSKSLLRSIMKEM 149 >gi|17986879|ref|NP_539513.1| DNA helicase II [Brucella melitensis bv. 1 str. 16M] gi|17982519|gb|AAL51777.1| DNA helicase ii [Brucella melitensis bv. 1 str. 16M] Length = 827 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q+H E L ++ V A AG+GKT +L R+ +L A+PS +L Sbjct: 6 QQHGEPDYLKGLNPKQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 65 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ ++ Sbjct: 66 AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 90 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ ++++ N+TS F I D + +LI++ + + LD+ Sbjct: 91 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 144 Query: 187 ELKKAFYEILEISNDEDI 204 + F +++ ++ Sbjct: 145 WPARTFANMIDGWKNKGF 162 >gi|255534061|ref|YP_003094433.1| exodeoxyribonuclease V [Pedobacter heparinus DSM 2366] gi|255347045|gb|ACU06371.1| Exodeoxyribonuclease V [Pedobacter heparinus DSM 2366] Length = 1073 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 83/194 (42%), Gaps = 19/194 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L L LLL+ + +L +T T A EM R+L+++ ++ Sbjct: 8 ILQASAGSGKTFSLTAHYLTLLLSGENKYREILAVTFTNKATEEMKSRILDVLQGFATGD 67 Query: 94 DEILSAEITKIQGKKPNKSDM--SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 ++ S + +D KA + IL V TI F + +++ F E Sbjct: 68 EKFNSYRNIVLNANPTLNADQLKEKADQIYRKILHDYSRFSVSTIDGFVQKVIRGFAFEL 127 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASI--MLDNNEELKKAFYEI-LEISNDED----- 203 + + +++ ++ K +A + LD+N +L + ++ +E ND Sbjct: 128 GLDAGYSLEMN------YDKVKDDLVAKLDEALDHNRQLLQWIIDLAIERINDNKSWNYK 181 Query: 204 --IETLISDIISNR 215 + LI +I R Sbjct: 182 TELYNLIGEIFKER 195 >gi|284992801|ref|YP_003411355.1| ATP-dependent DNA helicase PcrA [Geodermatophilus obscurus DSM 43160] gi|284066046|gb|ADB76984.1| ATP-dependent DNA helicase PcrA [Geodermatophilus obscurus DSM 43160] Length = 765 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 59/182 (32%), Gaps = 39/182 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81 ++ + A AGSGKT +L R+ LL P +L +T T AA EM R Sbjct: 37 QRQAVVHEGSPLLIVAGAGSGKTRVLTHRIAYLLGARGVQPGEVLAITFTNKAAGEMKER 96 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V ++ +AR + V T H+ C Sbjct: 97 VAALVG---------------------------PRAR-----------AMWVSTFHSMCV 118 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I++ + + S F I D+ S +L+ + L + D Sbjct: 119 RILRAEAAKLGLKSSFTIYDQGDSVRLMTMVARDLDLDAKRYPGRSLAAQVSNLKNELVD 178 Query: 202 ED 203 E+ Sbjct: 179 EE 180 >gi|297537598|ref|YP_003673367.1| UvrD/REP helicase [Methylotenera sp. 301] gi|297256945|gb|ADI28790.1| UvrD/REP helicase [Methylotenera sp. 301] Length = 732 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 43/193 (22%), Positives = 69/193 (35%), Gaps = 44/193 (22%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L++ ++QL A P +SA + A AGSGKT +L R+ L+ P+ LL +T T Sbjct: 7 LLTGLNNKQLEAVTLPQQSALILAGAGSGKTRVLTARIAWLIQTGQVSPTGLLAVTFTNK 66 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + G+ V Sbjct: 67 AAKEMLTRITASLPI--------------------------------------NTRGMWV 88 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ EA + + F I D +I+ K +D+ + K Sbjct: 89 GTFHGLCNRLLRAHHREAGLPASFQILDISDQLSVIKRLMKLM----NVDDEKFPPKQVQ 144 Query: 194 EILEISNDEDIET 206 + DE + Sbjct: 145 NFINGCKDEGLRA 157 >gi|294673714|ref|YP_003574330.1| putative ATP-dependent DNA helicase PcrA [Prevotella ruminicola 23] gi|294472187|gb|ADE81576.1| putative ATP-dependent DNA helicase PcrA [Prevotella ruminicola 23] Length = 809 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 38/164 (23%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID++ + Q +A + ++ V A AGSGKT +L ++ LL P +L LT T Sbjct: 3 IDILRELNDSQRVAVEYCDGASLVIAGAGSGKTRVLTYKIAWLLEQGMKPWQILALTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ E L+ Sbjct: 63 KAAREMKDRIGRLVGE-------------------------------------EQARYLQ 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ + ++F I D+ ++ L++ K Sbjct: 86 MGTFHSVFARILRVEADKIGYNANFTIYDQTDARSLVKTIIKEM 129 >gi|319942765|ref|ZP_08017069.1| superfamily I DNA and RNA helicase [Sutterella wadsworthensis 3_1_45B] gi|319803645|gb|EFW00595.1| superfamily I DNA and RNA helicase [Sutterella wadsworthensis 3_1_45B] Length = 816 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 66/193 (34%), Gaps = 44/193 (22%) Query: 15 DLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D+++ EQ + P S + A AGSGKT +L R+ LL N A +L +T T Sbjct: 4 DILANLNPEQHRAVTAPEESVLILAGAGSGKTRVLTTRIAWLLEHNLATTGEILAVTFTN 63 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I D+ + + Sbjct: 64 KAAKEMLTRLEGMI------------------------PYDLRR--------------MW 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T H C I++ EA + F I D L K + + +D + K Sbjct: 86 VGTFHGLCNRILRIHAQEAGLPKTFQILDSGDQLSL----VKRLMKAANIDVEKTDPKQV 141 Query: 193 YEILEISNDEDIE 205 + + + Sbjct: 142 VNFINWCKENGLR 154 >gi|86739360|ref|YP_479760.1| ATP-dependent DNA helicase PcrA [Frankia sp. CcI3] gi|86566222|gb|ABD10031.1| ATP-dependent DNA helicase PcrA [Frankia sp. CcI3] Length = 838 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D ++ ++ V A AGSGKT +L R+ LL A P +L +T T Sbjct: 61 LLDGLNL--QQRAAVVHIGAPLLVVAGAGSGKTRVLTHRIAYLLAARGVRPGEMLAITFT 118 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ +AR + Sbjct: 119 NKAANEMRERVSALVG---------------------------PRAR-----------AM 140 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I++ S F+I D +++LI + Sbjct: 141 WVSTFHSACVRILRSEAKRLGFGSTFSIYDAADAQRLITLVTRDL 185 >gi|240172870|ref|ZP_04751529.1| putative ATP dependent dna helicase [Mycobacterium kansasii ATCC 12478] Length = 768 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 85/213 (39%), Gaps = 53/213 (24%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPS 63 ++ E + +D ++ + + +L + A AGSGKT +L +R+ L+ A Sbjct: 7 DAKSETDQLLDGLNPQQRQAVL--HEGAPLLIVAGAGSGKTAVLTRRIAYLIAARGVAVG 64 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L +T T AAAEM RV+ ++ A +AR+ Sbjct: 65 QILAITFTNKAAAEMRERVVRLVGA---------------------------RARY---- 93 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKS------- 175 + V T H+ C I++ + S+F+I D + S++L++ + Sbjct: 94 -------MWVSTFHSTCVRILRNQASLIEGLNSNFSIYDADDSRRLLQMIGRDMGLDIKR 146 Query: 176 ----TLASIMLDNNEELKKAFYEILEISNDEDI 204 LA+ + + EL + +++D D Sbjct: 147 YSPRLLANAISNLKNELIDPHRALAHLTDDSDD 179 >gi|268680529|ref|YP_003304960.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946] gi|268618560|gb|ACZ12925.1| UvrD/REP helicase [Sulfurospirillum deleyianum DSM 6946] Length = 907 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 12/203 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R L LL A+ ++ LT T +A EM R+ E + + Sbjct: 7 LALEASAGSGKTFALSVRYLSLLFMGANAQKIVALTFTNKSAHEMKTRIFETLKDLENKE 66 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + AE T + + RHLL +K+ T+ AF I++ F L + Sbjct: 67 ELHAIAEQTGKSEEVLLREKEHVLRHLLQ------ADIKISTLDAFFALILRHFALNVGL 120 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 F+I +E +KLIE+ ++ N + + E D+ +L+ + Sbjct: 121 QPDFSIGEETLDEKLIEQFI-----ALCKSKNLYRSLIAFTLQEDKKLGDVFSLLHFLYQ 175 Query: 214 NRTALKLIFFFF-SYLWRRKIIE 235 ++ L+L F SY + +E Sbjct: 176 KKSELRLDAFPEASYPSLQPCLE 198 >gi|210629805|ref|ZP_03296129.1| hypothetical protein COLSTE_00012 [Collinsella stercoris DSM 13279] gi|210160798|gb|EEA91769.1| hypothetical protein COLSTE_00012 [Collinsella stercoris DSM 13279] Length = 660 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 40/161 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 ID+++ + E +L ++ V A AGSGKT +L R+ R++ P +L +T T Sbjct: 111 IDILNPAQREAVLTTE--GPLLVLAGAGSGKTRVLTFRIARMIGDLGIRPWQILAITFTN 168 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ ++ G+ Sbjct: 169 KAAAEMRERLGAMLPDGGMR-------------------------------------GMW 191 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 V T HA C I+++ T F I D++ S++++ E Sbjct: 192 VCTFHAMCVRILREDADLLGYTGQFTIYDDDDSRRMVREIM 232 >gi|319782887|ref|YP_004142363.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168775|gb|ADV12313.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 861 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 75/196 (38%), Gaps = 42/196 (21%) Query: 10 HSETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 H+ D + EQ LA + T V A AG+GKT +L R+ +L A PS +L Sbjct: 35 HNNAPDYLKGLNPEQRLAVETTEGPVLVLAGAGTGKTRVLTTRIAYILDTKRAWPSEILA 94 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ +I + Sbjct: 95 VTFTNKAAREMKQRIGILIGEGNVE----------------------------------- 119 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + T H+ ++++ A + S F I D + +LI++ + + LD+ Sbjct: 120 -GMPWLGTFHSIGVKLLRRHAELAGLRSDFTILDTDDVVRLIKQ----LIQAEGLDDKRW 174 Query: 188 LKKAFYEILEISNDED 203 K F ++++ ++ Sbjct: 175 PAKQFAQMIDGWKNKG 190 >gi|284928732|ref|YP_003421254.1| Rep family ATP-dependent DNA helicase [cyanobacterium UCYN-A] gi|284809191|gb|ADB94896.1| ATP-dependent DNA helicase, Rep family [cyanobacterium UCYN-A] Length = 772 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 50/238 (21%), Positives = 95/238 (39%), Gaps = 34/238 (14%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 D +S+ Q A + V A AGSGKT L R+ L++ +P ++L +T T Sbjct: 6 DFLSKLNHSQRCAVEHFCGPLLVIAGAGSGKTRALTYRIANLIIYNKVNPESILAVTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL--ETPGG 130 AA EM R+ D++L+ EI+ K+P S + L++ + +T Sbjct: 66 KAAKEMKDRL-----------DKLLAQEISSKNYKQPFDSLSEFNQKKLLSFIYKKTTKQ 114 Query: 131 LKVQTIHAFCEAIMQQFPLEANI---------TSHFAIADEEQSKKLIEEAKKSTLASIM 181 L + T H+ C I++ + N +F+I DE + +++ L Sbjct: 115 LWIGTFHSLCARILR---YDINKYQDSKKRKWDRNFSIFDESDVQNILKNI---ILKQFN 168 Query: 182 LDNNEELKKAFYEILEISNDEDI--ETLISD--IISNRTALKLIFFFFSYLWRRKIIE 235 LD +A + + + + E + + R ++ + + L ++ Sbjct: 169 LDEKTFNPRAIRYAISSAKNLGLSPEEYLKEHSYSKGRVIAEIYDEYQTQLAENNALD 226 >gi|91974519|ref|YP_567178.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5] gi|91680975|gb|ABE37277.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5] Length = 1115 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 45/202 (22%), Positives = 83/202 (41%), Gaps = 8/202 (3%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I + + + V A AGSGKT ++ RV L P + +T T+ AA+ Sbjct: 4 IPDLVARARALTAIENTLLVEAGAGSGKTSVMAGRVAVLFGKGVEPKNIAAITFTELAAS 63 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R+ + TA S + + K+++ +A ++ L TI Sbjct: 64 ELRLRIEKFTTALSLGDVPPDLTQAFPEGVPEAEKANLYRA-------CQSFDQLACTTI 116 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS-IMLDNNEELKKAFYEI 195 H F +++++ +P EA I I D ++++ E + L + +D+ + L Sbjct: 117 HGFAQSLIKPYPAEAGIDPGADIVDPDEAELAFGERYDAWLKQRLSVDDADGLVAQLVLA 176 Query: 196 LEISNDEDIETLISDIISNRTA 217 E + IE + + NR A Sbjct: 177 DEGGGLKLIEEVAQFLRKNRDA 198 >gi|167038090|ref|YP_001665668.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116497|ref|YP_004186656.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856924|gb|ABY95332.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929588|gb|ADV80273.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 711 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 55/160 (34%), Gaps = 40/160 (25%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76 + ++ + A AGSGKT +L R+ L+ PS +L +T T AA Sbjct: 7 NLNDKQREAVMTTEGPLLILAGAGSGKTRVLTHRIAYLIKEKKVSPSNILAITFTNKAAE 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV +++ G L V T Sbjct: 67 EMKTRVEDLLGYI---------------------------------------GDLWVSTF 87 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ C I+++ + +F I D K LI+E K Sbjct: 88 HSACVRILRRDIDKIGYDRNFVIFDTTDQKALIQECLKEL 127 >gi|212716069|ref|ZP_03324197.1| hypothetical protein BIFCAT_00982 [Bifidobacterium catenulatum DSM 16992] gi|212661436|gb|EEB22011.1| hypothetical protein BIFCAT_00982 [Bifidobacterium catenulatum DSM 16992] Length = 907 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 39/156 (25%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 LI +Q+ A ++ + A AGSGKT +L +R+ LL S++L +T T A Sbjct: 31 LIKDLNPQQMEAVKYYGQALLIGAGAGSGKTRVLTRRIAWLLAHGFWASSILAITFTNKA 90 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM R+ ++ + + + Sbjct: 91 AAEMRERLAALVGPEAEH--------------------------------------MWIS 112 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H+ C I+++ E +TS F+I D ++L++ Sbjct: 113 TFHSACVRILRRDGKEIGLTSGFSIYDTADCERLVK 148 >gi|83951554|ref|ZP_00960286.1| DNA helicase II, putative [Roseovarius nubinhibens ISM] gi|83836560|gb|EAP75857.1| DNA helicase II, putative [Roseovarius nubinhibens ISM] Length = 782 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 67/193 (34%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ + E + D + A AG+GKT L R+ LL A P +L +T T Sbjct: 27 YLDGLNPEQREAVERLD--GPVLMLAGAGTGKTKALTSRIAHLLSTGSARPDEILAVTFT 84 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV + G Sbjct: 85 NKAAREMKDRVAAHLGEAVE-------------------------------------GMR 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C ++++ + S+F I D + +L+++ + + +D+ + Sbjct: 108 WLGTFHSICVKLLRRHAELVGLKSNFTILDTDDQLRLLKQLVQ----AAGIDDKRWPARQ 163 Query: 192 FYEILEISNDEDI 204 +++ + Sbjct: 164 LAGVIDQWKNRAW 176 >gi|77407976|ref|ZP_00784726.1| reticulocyte binding protein [Streptococcus agalactiae COH1] gi|77173434|gb|EAO76553.1| reticulocyte binding protein [Streptococcus agalactiae COH1] Length = 1207 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 29/218 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++V+R+L LL +L T T AA E+ Sbjct: 29 TPEQIEAIYTFGNNVLVSASAGSGKTFVMVERILDKLLRGVPIESLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I + ++ + L L + T+ AF Sbjct: 89 ERLEKKI-------------------NESLKSAESDDLKQFLTQQLVGIQTADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-E 197 + I+ Q+ I+ F I D+ + + E + M N +F +++ Sbjct: 130 TQKIVNQYGYTLGISPIFRILQDKNEQDVIKNEVYADLFSDYMTGKNAA---SFIKLVKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 S + +++ K+ F S ++ ++ Sbjct: 187 FSGNRKDSKAFREMV-----YKVYAFSQSIDNPKRWMQ 219 >gi|76787847|ref|YP_329619.1| exonuclease RexA [Streptococcus agalactiae A909] gi|77406401|ref|ZP_00783461.1| reticulocyte binding protein [Streptococcus agalactiae H36B] gi|77410683|ref|ZP_00787042.1| reticulocyte binding protein [Streptococcus agalactiae CJB111] gi|123601917|sp|Q3K1I4|ADDA_STRA1 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|76562904|gb|ABA45488.1| exonuclease RexA [Streptococcus agalactiae A909] gi|77163219|gb|EAO74171.1| reticulocyte binding protein [Streptococcus agalactiae CJB111] gi|77174992|gb|EAO77801.1| reticulocyte binding protein [Streptococcus agalactiae H36B] Length = 1207 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 29/218 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++V+R+L LL +L T T AA E+ Sbjct: 29 TPEQIEAIYTFGNNVLVSASAGSGKTFVMVERILDKLLRGVPIDSLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I + ++ + L L + T+ AF Sbjct: 89 ERLEKKI-------------------NESLKSAESDDLKQFLTQQLVGIQTADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-E 197 + I+ Q+ I+ F I D+ + + E + M N +F +++ Sbjct: 130 TQKIVNQYGYTLGISPIFRILQDKNEQDVIKNEVYADLFSDYMTGKNAA---SFIKLVKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 S + +++ K+ F S ++ ++ Sbjct: 187 FSGNRKDSKAFREMV-----YKVYAFSQSTDNPKRWMQ 219 >gi|326771959|ref|ZP_08231244.1| ATP-dependent DNA helicase PcrA [Actinomyces viscosus C505] gi|326638092|gb|EGE38993.1| ATP-dependent DNA helicase PcrA [Actinomyces viscosus C505] Length = 957 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 63/172 (36%), Gaps = 41/172 (23%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 + + +E I ++ +++ + + A AGSGKT +L R+ L+ A P Sbjct: 101 TVSDPAELIRGLN--PAQESAVTHAGAPLLIIAGAGSGKTRVLTHRIAHLIATGRARPGE 158 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AAAEM RV ++ Sbjct: 159 ILAITFTNKAAAEMRERVTALVGPAGE--------------------------------- 185 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ A + S F+I D S +LI + Sbjct: 186 -----RMWVSTFHSACVRILRREHEAAGLRSTFSIYDAADSTRLITLIVREL 232 >gi|22537037|ref|NP_687888.1| exonuclease RexA [Streptococcus agalactiae 2603V/R] gi|81588583|sp|Q8E061|ADDA_STRA5 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|22533894|gb|AAM99760.1|AE014231_18 exonuclease RexA [Streptococcus agalactiae 2603V/R] Length = 1207 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 29/218 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++V+R+L LL +L T T AA E+ Sbjct: 29 TPEQIEAIYTFGNNVLVSASAGSGKTFVMVERILDKLLRGVPIDSLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I + ++ + L L + T+ AF Sbjct: 89 ERLEKKI-------------------NESLKSAESDDLKQFLTQQLVGIQTADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-E 197 + I+ Q+ I+ F I D+ + + E + M N +F +++ Sbjct: 130 TQKIVNQYGYTLGISPIFRILQDKNEQDVIKNEVYADLFSDYMTGKNAA---SFIKLVKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 S + +++ K+ F S ++ ++ Sbjct: 187 FSGNRKDSKAFREMV-----YKVYAFSQSTDNPKRWMQ 219 >gi|331270358|ref|YP_004396850.1| UvrD/REP helicase [Clostridium botulinum BKT015925] gi|329126908|gb|AEB76853.1| UvrD/REP helicase [Clostridium botulinum BKT015925] Length = 761 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHT 71 +DL S EQ A+ V A AGSGKT +L R+ ++ P +L +T T Sbjct: 1 MDLKSLLNEEQYKAATAIEGPVLVLAGAGSGKTRVLTYRIAHMIEDLGIPQYNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++++ + + Sbjct: 61 NKAAGEMKDRIKKLVS--------------------------------------NSIDSM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + + +FAI D K LI++ K Sbjct: 83 WVSTFHSCCVRILRREIDKLGYSKNFAIYDSSDQKNLIKQCMKEL 127 >gi|296272052|ref|YP_003654683.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299] gi|296096227|gb|ADG92177.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299] Length = 911 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 87/201 (43%), Gaps = 12/201 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + LLL A P+ +L LT T AA EMS R+ + + L Sbjct: 5 LALKASAGSGKTFALTVRYISLLLKGASPTEILALTFTNKAAKEMSERIFKTLK---SLG 61 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 ++ + E + + ++K +L+ L L + TI F I+++F + Sbjct: 62 EDKVYLEQISSVSELSVEQILNKKDYLINLYLN--SELSIYTIDKFVNKILREFSGYIGV 119 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 F+I + IE + L S+ L+N ++L + E I + ++ Sbjct: 120 DDDFSIKQDN-----IENLEYKFLQSLNLENFDKLIN--FSYYEAKKFNSIFDIFLNLNE 172 Query: 214 NRTALKLIFFFFSYLWRRKII 234 K++ + + +K + Sbjct: 173 KNEDFKIVPIEENLINLQKNL 193 >gi|254708085|ref|ZP_05169913.1| DNA helicase II [Brucella pinnipedialis M163/99/10] Length = 611 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q+H E L ++ V A AG+GKT +L R+ +L A+PS +L Sbjct: 37 QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ ++ Sbjct: 97 AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 121 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ ++++ N+TS F I D + +LI++ + + LD+ Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175 Query: 187 ELKKAFYEILEISNDEDI 204 + F +++ ++ Sbjct: 176 WPARTFANMIDGWKNKGF 193 >gi|220911705|ref|YP_002487014.1| ATP-dependent DNA helicase PcrA [Arthrobacter chlorophenolicus A6] gi|219858583|gb|ACL38925.1| ATP-dependent DNA helicase PcrA [Arthrobacter chlorophenolicus A6] Length = 837 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 41/205 (20%), Positives = 80/205 (39%), Gaps = 45/205 (21%) Query: 3 YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61 +H + ++ + ++ + E + + + + A AGSGKT +L R+ L+ AH Sbjct: 56 HHGRRLDPAKLTEGLNPQQEEAVKHA--GSALLIVAGAGSGKTRVLSNRIAYLIATGRAH 113 Query: 62 PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121 +L +T T AAAEM R+ ++ + + Sbjct: 114 HGEILAITFTNKAAAEMRERIEALVGGRAKI----------------------------- 144 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 + + T H+ C I++Q + S+F+I D S +L+ + K ++ Sbjct: 145 ---------MWISTFHSSCVRILRQEAANVGLKSNFSIYDAADSLRLVTQVSK----ALD 191 Query: 182 LDNNEELKKAFYEILEISNDEDIET 206 LD + KA + +E I+ Sbjct: 192 LDPKKFAPKAIQHKISALKNELIDA 216 >gi|88808097|ref|ZP_01123608.1| UvrD/REP helicase [Synechococcus sp. WH 7805] gi|88788136|gb|EAR19292.1| UvrD/REP helicase [Synechococcus sp. WH 7805] Length = 794 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 68/174 (39%), Gaps = 19/174 (10%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + ++ Q A D V A AGSGKT L R+ L+ A P+ +L +T T Sbjct: 1 MSFLAGLNDAQRRAVDHHEGPLLVVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL-ETPGG 130 AA EM R+ ++ S G+ + + R L I E Sbjct: 61 NKAAREMKERLELLLAQRLAQSQ----------FGQPWSTLPPVEQRQLRSRIYREVTKE 110 Query: 131 LKVQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAKKSTLA 178 L + T HA +++ +F ++ F+I DE ++ L++E L Sbjct: 111 LWIGTFHALFARMLRYDIDKFKDSEGLSWTKQFSIYDEADAQSLVKEIVTQELQ 164 >gi|126649601|ref|ZP_01721842.1| PcrA [Bacillus sp. B14905] gi|126593926|gb|EAZ87849.1| PcrA [Bacillus sp. B14905] Length = 750 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 66/188 (35%), Gaps = 42/188 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L ++ + A AGSGKT +L R+ L++ +PS +L +T T A Sbjct: 9 LAGMNPEQERAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLIIEKEVYPSKVLAITFTNKA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ I+ T + V Sbjct: 69 AREMRERIDGILGNG-------------------------------------TGDSMWVS 91 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C I+++ + I+ +F+I D +I K+ + +D +A Sbjct: 92 TFHSMCVRILRRNIDQLGISRNFSILDSTDQLSVI----KNVMKDENIDPKRFEPRAILN 147 Query: 195 ILEISNDE 202 + + +E Sbjct: 148 AISAAKNE 155 >gi|325696015|gb|EGD37906.1| exonuclease RexA [Streptococcus sanguinis SK160] Length = 1224 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++VQR++ +L S L T T AA E+ Sbjct: 29 TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R + K G+ +++ + + L L + T+ AF Sbjct: 89 ER-------------------LEKELGQALKEAESPELKQHLAQQLADLPNADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ ++ + +F I + L E + E + F +++ Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDRYY---DSERQALFSRLVKN 186 Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 + D+ R + ++ F S ++ +E++ Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWLEETFL 223 >gi|210623345|ref|ZP_03293743.1| hypothetical protein CLOHIR_01693 [Clostridium hiranonis DSM 13275] gi|210153655|gb|EEA84661.1| hypothetical protein CLOHIR_01693 [Clostridium hiranonis DSM 13275] Length = 755 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 65/189 (34%), Gaps = 42/189 (22%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 ++L + S++ + A AGSGKT +L R+ L+ P+ +L +T T Sbjct: 1 MNLDTLNPSQRRAVERTEGPVLILAGAGSGKTRVLTTRIAHLIDKGVQPANILAITFTNK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV E + + + + + Sbjct: 61 AANEMRERVEETVESDTK--------------------------------------DMWI 82 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ C I+++ + F I D LI++ L + + + K Sbjct: 83 STFHSCCVRILRKDINKIGYNRSFVIYDAADQVTLIKDC----LKELNISDKAFEPKTVI 138 Query: 194 EILEISNDE 202 + + D+ Sbjct: 139 SYISGAKDK 147 >gi|108763229|ref|YP_630836.1| ATP-dependent DNA helicase UvrD [Myxococcus xanthus DK 1622] gi|108467109|gb|ABF92294.1| ATP-dependent DNA helicase, UvrD/REP family [Myxococcus xanthus DK 1622] Length = 1220 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 83/196 (42%), Gaps = 11/196 (5%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLAN------AHPSTLLCLTHTKAAAAEMSHRVLE 84 R+ + A AG+GKT+ LV L LL PS L LT T AAAEM RV + Sbjct: 11 ERNLALMAGAGAGKTYSLVTMTLHLLAGARVAGGAVRPSRLCMLTFTDKAAAEMRSRVRQ 70 Query: 85 IITAWSHLSDEI-LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + + ++ + + + A L L G V T H+ C + Sbjct: 71 RLDGLAQGDTRLDQEVDLRESLARLDKPFPLPDAWRQLREEL---GAATVGTFHSLCGQL 127 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 +++ P I +F + D ++ L+++ + + + + ++++ E+ + Sbjct: 128 LRRAPPAVGIDPNFEVLDSLEATGLVQDVCERVVLDALEAGDAQVRELCQELGFSGSGFS 187 Query: 204 IETLISDIISNRTALK 219 + L++ +++ L+ Sbjct: 188 -DGLVAALMAVYGKLR 202 >gi|238020268|ref|ZP_04600694.1| hypothetical protein GCWU000324_00143 [Kingella oralis ATCC 51147] gi|237868662|gb|EEP69666.1| hypothetical protein GCWU000324_00143 [Kingella oralis ATCC 51147] Length = 746 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 66/202 (32%), Gaps = 44/202 (21%) Query: 7 FQEHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 F + + L++ EQL A P +SA V A AGSGKT +L RV LL A + Sbjct: 3 FSSENPSQSLLNNLNPEQLAAVTYPPQSALVLAGAGSGKTRVLTTRVAWLLQNQMASVRS 62 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ Sbjct: 63 ILAVTFTNKAAKEMQTRLSAMLP------------------------------------- 85 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 + + T H C ++ EA + F I D LI K L + + Sbjct: 86 -LNLRAMWLGTFHGLCHRFLRLHYREAGLPQTFQILDSSDQLSLI----KRLLKQLNISE 140 Query: 185 NEELKKAFYEILEISNDEDIET 206 + + + + Sbjct: 141 ESLAPRVLQGFINAQKEAGLRA 162 >gi|223044036|ref|ZP_03614076.1| ATP-dependent DNA helicase PcrA [Staphylococcus capitis SK14] gi|222442579|gb|EEE48684.1| ATP-dependent DNA helicase PcrA [Staphylococcus capitis SK14] Length = 731 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 39/159 (24%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76 + + + A AGSGKT +L R+ LL+ + P +L +T T AA Sbjct: 7 NMNTEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLVEKDVSPYNILAITFTNKAAK 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV +++ + + + + T Sbjct: 67 EMKERVEQLVGEEAQV--------------------------------------IWMSTF 88 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 H+ C I+++ I +F I D K +I++ K+ Sbjct: 89 HSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127 >gi|283782861|ref|YP_003373615.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis 409-05] gi|283441838|gb|ADB14304.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis 409-05] Length = 1023 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 41/175 (23%) Query: 3 YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAH 61 + + + +D ++ +S+ + P + A AGSGKT +L +R+ +L A Sbjct: 130 HSRVAVDAQKLLDGLNPQQSQAVQYDGPA--LLIGAGAGSGKTRVLTRRIAWILSQKGAW 187 Query: 62 PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121 PS +L +T T AAAEM R+ ++I + + Sbjct: 188 PSQILAITFTNKAAAEMRERLSKLIGSEA------------------------------- 216 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ + S F+I D ++L++ Sbjct: 217 -------NTMWVSTFHSACVKILRRSGQYIGLKSGFSIYDTSDCERLVKIIATEL 264 >gi|225027982|ref|ZP_03717174.1| hypothetical protein EUBHAL_02242 [Eubacterium hallii DSM 3353] gi|224954696|gb|EEG35905.1| hypothetical protein EUBHAL_02242 [Eubacterium hallii DSM 3353] Length = 738 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 62/184 (33%), Gaps = 43/184 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ + A AGSGKT L R+ L+ P +L +T T AA EM Sbjct: 8 NNEQREAVFCTEGPLLMLAGAGSGKTRSLTHRIAYLIEEKGVAPWNILAITFTNKAAQEM 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ S + + T HA Sbjct: 68 RERVDALVGYGSE--------------------------------------DIWISTFHA 89 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C I+++ +F I D K L++E L + +D + L+++ + Sbjct: 90 TCSRILRRHIDLLGYDRNFTIYDASDQKSLMKE----VLKEMKIDTKQFLERSVMSEISS 145 Query: 199 SNDE 202 + +E Sbjct: 146 AKNE 149 >gi|312622478|ref|YP_004024091.1| uvrd/rep helicase [Caldicellulosiruptor kronotskyensis 2002] gi|312202945|gb|ADQ46272.1| UvrD/REP helicase [Caldicellulosiruptor kronotskyensis 2002] Length = 714 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 39/165 (23%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ + + +Q A V A AGSGKT ++ R+ +L A P +L +T T Sbjct: 1 MEWLKELNEQQKEAVLSTEGPLLVLAGAGSGKTRVITYRIAYILNMGLADPGNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +++ ++ + Sbjct: 61 NKAADEMKERIKRLVST-------------------------------------QSFSEM 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HA C I++ +++F I D + +L++E Sbjct: 84 WVSTFHAACARILRMEAHNIGFSNNFVIFDTQDRNQLLKECFDKL 128 >gi|301310450|ref|ZP_07216389.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 20_3] gi|300832024|gb|EFK62655.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 20_3] Length = 779 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 39/165 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 E ++ +++++ E ++ ++ + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 5 EYLNQLNESQREAVVYNE--GPSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 62 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ I +T L Sbjct: 63 NKAAREMKERIAAITGD-------------------------------------QTARRL 85 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ S+F I D SK L++ K Sbjct: 86 WMGTFHSIFSRILRNEAEHIGYPSNFTIYDATDSKSLLKSIIKEM 130 >gi|322516094|ref|ZP_08069031.1| exonuclease RexA [Streptococcus vestibularis ATCC 49124] gi|322125509|gb|EFX96855.1| exonuclease RexA [Streptococcus vestibularis ATCC 49124] Length = 1217 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 79/223 (35%), Gaps = 31/223 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++V+R+L ++ L T T AA E+ Sbjct: 29 TPEQIEAIYSNGTNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + +T ++ +++ + R L + G + T+ AF Sbjct: 89 ERLEKRLT-------------------EQLGQAETDEERAFLSDQIAKIGTADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-- 196 + ++ Q+ ++ F I D + + E M + +L + Sbjct: 130 TQKLVNQYGYLLGVSPIFRIMTDPAEQTLMKNEVYADLFNDYMQGKDAQLFQKLVRNFTG 189 Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + L+ D+ F + K + ++L Sbjct: 190 HSKTSKAFRDLVYDV---------YNFSQATAGPEKWLRQNLL 223 >gi|227498096|ref|ZP_03928269.1| ATP-dependent DNA helicase [Actinomyces urogenitalis DSM 15434] gi|226832489|gb|EEH64872.1| ATP-dependent DNA helicase [Actinomyces urogenitalis DSM 15434] Length = 972 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 61/167 (36%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 +E + ++ + + + + A AGSGKT +L R+ LL A P +L +T Sbjct: 130 TELVKGLNPAQEQ--AVTHVGAPLLIIAGAGSGKTRVLTHRIAYLLATGRARPGEILAIT 187 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM RV ++ Sbjct: 188 FTNKAAAEMRERVAGLVGPAGE-------------------------------------- 209 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ A + S F+I D S++LI K Sbjct: 210 RMWVSTFHSACVRILRREHEAAGLRSTFSIYDSADSQRLITLIVKEL 256 >gi|239625785|ref|ZP_04668816.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520015|gb|EEQ59881.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 854 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 45/189 (23%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 D ++ + E + A AGSGKT +L RV L+ + +P +L +T T Sbjct: 5 DTLNPMQKE--AVFHTEGPLLILAGAGSGKTRVLTHRVAYLIDEKDVNPWNILAITFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ + + V Sbjct: 63 AAGEMRERVDQLVGFGAE--------------------------------------SIWV 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ C I+++ T+ F+I D + K L+++ S+ +D + +++ Sbjct: 85 STFHSTCVRILRRHIECLGYTTSFSIYDSDDQKTLMKQ----VFKSLDVDTKQFKERSVL 140 Query: 194 EILEISNDE 202 ++ + D+ Sbjct: 141 GVISSAKDK 149 >gi|255013887|ref|ZP_05286013.1| putative helicase [Bacteroides sp. 2_1_7] Length = 780 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 39/165 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 E ++ +++++ E ++ ++ + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 5 EYLNQLNESQREAVVYNE--GPSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 62 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ I +T L Sbjct: 63 NKAAREMKERIAAITGD-------------------------------------QTARRL 85 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ S+F I D SK L++ K Sbjct: 86 WMGTFHSIFSRILRNEAEHIGYPSNFTIYDATDSKSLLKSIIKEM 130 >gi|253827592|ref|ZP_04870477.1| putative helicase [Helicobacter canadensis MIT 98-5491] gi|253510998|gb|EES89657.1| putative helicase [Helicobacter canadensis MIT 98-5491] Length = 919 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 4/150 (2%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 ++A+AGSGKT+ LV R L LL A PS +L LT TK AA EM R+++ I Sbjct: 6 LCLNASAGSGKTYRLVLRYLELLFLGAKPSEILTLTFTKKAAKEMEERIVKSIQEIYQRK 65 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 ++ + + + K + L LK+ TI +F + I++ F + Sbjct: 66 NDREYIKKLEFISINDLEGIEQKITKIYYEFLR--EDLKITTIDSFFQRILKSFCWYVGV 123 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 ++F I +E+ ++I E L+ + Sbjct: 124 ENNFEIQNED--FEIITEIFLELLSDEAFE 151 >gi|146298462|ref|YP_001193053.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101] gi|146152880|gb|ABQ03734.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101] Length = 1052 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 78/172 (45%), Gaps = 10/172 (5%) Query: 38 ANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 A+AGSGKT+ LV+ L+++L N +L +T T A EM R++ ++ ++ Sbjct: 11 ASAGSGKTYTLVKEYLKIILSSPKNDAYRNILAITFTNKAVHEMKSRIVGSLSEFAKEEP 70 Query: 95 EILSAEITKIQGKKPNKSDMS---KARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 + ++ + + S + K++ ++ ++ + TI F +++ F + Sbjct: 71 SAKAVDLMEDLSRDTGLSIIQLKVKSQSIIKHLIHNYAAFDISTIDKFTHKVIRAFAHDL 130 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 N+ F + + ++ L+ EA + +A D E L K + D+D Sbjct: 131 NLPMTFEVTLDTEN--LLVEAVDAIIAQAGQD--ETLTKLLIDFTMEKTDDD 178 >gi|317488290|ref|ZP_07946855.1| hypothetical protein HMPREF1023_00553 [Eggerthella sp. 1_3_56FAA] gi|316912607|gb|EFV34151.1| hypothetical protein HMPREF1023_00553 [Eggerthella sp. 1_3_56FAA] Length = 191 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 70/188 (37%), Gaps = 39/188 (20%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCL 68 ++L + T ++ VSA AGSGKT L QR+ LL + P +L + Sbjct: 1 MNLSTCTPGQRQSIEHVRGPLLVSAGAGSGKTFTLTQRIAYALLPESGPAASGVDEVLAI 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T+ AAAE+ RV + +A L L Sbjct: 61 TFTEKAAAEIKARVKRTL-----------------------------RAEGLAEEALRV- 90 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 G + TIH C I++ L+ + F I + + EA + + D+N+ + Sbjct: 91 DGAWISTIHGMCARILRAHALDLGLDPAFGIMGDAE----RAEAVADAIDGALGDDNDII 146 Query: 189 KKAFYEIL 196 + Y L Sbjct: 147 ARGSYAAL 154 >gi|16125775|ref|NP_420339.1| DNA helicase II [Caulobacter crescentus CB15] gi|13422909|gb|AAK23507.1| DNA helicase II [Caulobacter crescentus CB15] Length = 805 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 69/193 (35%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ ++ V A AG+GKT +L R+ +L A P +L +T T Sbjct: 39 YLDGLN--PEQREAVETTEGPLLVLAGAGTGKTRVLTTRLAHILATGRARPWEILAVTFT 96 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ II P + Sbjct: 97 NKAAREMRERITHIIG---------------------PEAEGLR---------------- 119 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ I+++ + S++ I D + +++L+++ + + +D + Sbjct: 120 WLGTFHSVAAQILRRHAELIGLKSNYTIIDTDDNERLLKQ----LIEAENIDAKRWTPRI 175 Query: 192 FYEILEISNDEDI 204 +I++ + Sbjct: 176 LSQIIDGWKNRGW 188 >gi|325694960|gb|EGD36865.1| exonuclease RexA [Streptococcus sanguinis SK150] Length = 1224 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++VQR++ +L S L T T AA E+ Sbjct: 29 TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R + K G+ +++ + + L L + T+ AF Sbjct: 89 ER-------------------LEKELGQALKEAESPELKQYLAQQLADLPNADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ ++ + +F I + L E + E + F +++ Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDRYY---DSERQALFSRLVKN 186 Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 + D+ R + ++ F S ++ +E++ Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWMEETFL 223 >gi|320104388|ref|YP_004179979.1| UvrD/REP helicase [Isosphaera pallida ATCC 43644] gi|319751670|gb|ADV63430.1| UvrD/REP helicase [Isosphaera pallida ATCC 43644] Length = 841 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 40/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + T +++ + V A AGSGKT ++ +R+ L+ + A S++L +T T AA Sbjct: 22 MADLTPAQRQAVAHLEGPMLVLAGAGSGKTRVITRRIAYLIRSGAVGSSILAITFTNKAA 81 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ +I+ G+ V T Sbjct: 82 GEMKRRIEDIVPN----------------------------------------SGVWVGT 101 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ C +M+ + + F I D K+I+ + Sbjct: 102 FHSVCARLMRTYAPLIGLDRGFTIHDSSDRIKVIKACVRQL 142 >gi|258651495|ref|YP_003200651.1| ATP-dependent DNA helicase PcrA [Nakamurella multipartita DSM 44233] gi|258554720|gb|ACV77662.1| ATP-dependent DNA helicase PcrA [Nakamurella multipartita DSM 44233] Length = 864 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 60/163 (36%), Gaps = 41/163 (25%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 E +D ++ + E V A AGSGKT +L +R+ LL + A P +L +T Sbjct: 34 ELLDGLNPPQRE--AVEHRGAPLLVVAGAGSGKTRVLTRRIAYLLAVGGAQPGEILAITF 91 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV +++ Sbjct: 92 TNKAAREMKDRVTDLVGGRGR--------------------------------------S 113 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + V T H+ C I++ + + + F I D+ S++L + Sbjct: 114 MWVSTFHSMCVRILRAEATQIGLKTTFTIYDQADSQRLAQLVA 156 >gi|291288294|ref|YP_003505110.1| UvrD/REP helicase [Denitrovibrio acetiphilus DSM 12809] gi|290885454|gb|ADD69154.1| UvrD/REP helicase [Denitrovibrio acetiphilus DSM 12809] Length = 703 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 62/168 (36%), Gaps = 41/168 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCL 68 + D +++ + E + V A AG+GKT ++ R+ L+ PS +L + Sbjct: 1 MPDYKDELNKAQYE--AVTTTEGPLLVLAGAGTGKTRVITYRIAHLINNMRVPSRNILAV 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R+L+++ Sbjct: 59 TFTNKAAGEMKERILKLVDYED-------------------------------------- 80 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T H+ C ++++ P +A + F I D++ I + K+ Sbjct: 81 ADIWIGTFHSICLRLLRRDPEKAGLEPGFGILDQDDRLATIRDIIKNL 128 >gi|261337326|ref|ZP_05965210.1| ATP-dependent DNA helicase PcrA [Bifidobacterium gallicum DSM 20093] gi|270277699|gb|EFA23553.1| ATP-dependent DNA helicase PcrA [Bifidobacterium gallicum DSM 20093] Length = 878 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ +Q LA + + A AGSGKT +L +R+ +L A PS +L +T T Sbjct: 13 ELVGDLNEQQALAVQYSGPALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 72 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ +I + + Sbjct: 73 KAAAEMRERLEALIGPEAQ--------------------------------------RMW 94 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + S F+I D ++LI+ Sbjct: 95 VSTFHSACVRILRRNGESVGLKSGFSIYDTADCERLIKLIASDL 138 >gi|169628149|ref|YP_001701798.1| putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus ATCC 19977] gi|169240116|emb|CAM61144.1| Putative ATP-dependent DNA helicase PcrA [Mycobacterium abscessus] Length = 807 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 80/211 (37%), Gaps = 54/211 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ + + A AGSGKT +L +R+ LL A + P +L +T T AAAEM Sbjct: 28 NPQQRAAVAHQGAPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQILAITFTNKAAAEM 87 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV I+ + V T H+ Sbjct: 88 RERVGRIVANRVQ--------------------------------------SMWVSTFHS 109 Query: 139 FCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKS-----------TLASIMLDNNE 186 C I++ Q L + S+F+I D + S++L++ + LA+ + + Sbjct: 110 SCVRILRNQASLLPGLNSNFSIYDSDDSRRLLQMIGRDMGLDIKRYSPRLLATAISNLKN 169 Query: 187 EL---KKAFYEILEISNDEDIETLISDIISN 214 EL ++A + D ++ + I+++ Sbjct: 170 ELISPEQAVANLTAGGQDGELRGDLPQIVAD 200 >gi|215402750|ref|ZP_03414931.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis 02_1987] gi|289744679|ref|ZP_06504057.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis 02_1987] gi|289685207|gb|EFD52695.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis 02_1987] Length = 770 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 44/232 (18%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 + +D ++ + + ++ + A AGSGKT +L +R+ L+ A +L +T Sbjct: 18 QLLDGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV+ ++ KAR+ Sbjct: 76 TNKAAAEMRERVVGLVG---------------------------EKARY----------- 97 Query: 131 LKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + V T H+ C I++ + S+F+I D + S++L++ + I + L Sbjct: 98 MWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLA 157 Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 A + D ++ + + L ++R++ + Sbjct: 158 NAISNLKNELIDP--HQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDF 207 >gi|169825828|ref|YP_001695986.1| ATP-dependent DNA helicase pcrA [Lysinibacillus sphaericus C3-41] gi|168990316|gb|ACA37856.1| ATP-dependent DNA helicase pcrA [Lysinibacillus sphaericus C3-41] Length = 749 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 66/188 (35%), Gaps = 42/188 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L ++ + A AGSGKT +L R+ L++ +PS +L +T T A Sbjct: 9 LAGMNPEQERAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLIIEKEVYPSKVLAITFTNKA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ I+ T + V Sbjct: 69 AREMRERIDGILGNG-------------------------------------TGDSMWVS 91 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C I+++ + I+ +F+I D +I K+ + +D +A Sbjct: 92 TFHSMCVRILRRNIDQLGISRNFSILDSTDQLSVI----KNVMKDENIDPKRFEPRAILN 147 Query: 195 ILEISNDE 202 + + +E Sbjct: 148 AISAAKNE 155 >gi|288919731|ref|ZP_06414058.1| UvrD/REP helicase [Frankia sp. EUN1f] gi|288348920|gb|EFC83170.1| UvrD/REP helicase [Frankia sp. EUN1f] Length = 733 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 80/229 (34%), Gaps = 49/229 (21%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E ++ ++ + V A AGSGKT +L R+ LL A P +L +T Sbjct: 72 ELLEGLN--PQQHAAVVHAGAPLLVVAGAGSGKTRVLTHRIAYLLAARGVRPGEILAITF 129 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV ++ +AR Sbjct: 130 TNKAAGEMKERVEALVGG---------------------------RAR-----------A 151 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + V T H+ C I++ S F+I D +++L+ + + LD K Sbjct: 152 MWVSTFHSACVRILRSEAARLGFASSFSIYDAADAQRLLTLVTRD----LDLDPKRHTAK 207 Query: 191 AFYEILEISNDE--DIETLISDIISN--RTALKLIFFFFSYLWRRKIIE 235 A + +E D ET S+ RT ++ + L + ++ Sbjct: 208 ALAVAISALKNELVDWETARDRAASHIERTVAEVYASYQQRLAQANALD 256 >gi|298375530|ref|ZP_06985487.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_19] gi|298268030|gb|EFI09686.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_19] Length = 778 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 39/165 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 E ++ +++++ E ++ ++ + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 3 EYLNQLNESQREAVVYNE--GPSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ I +T L Sbjct: 61 NKAAREMKERIAAITGD-------------------------------------QTARRL 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ S+F I D SK L++ K Sbjct: 84 WMGTFHSIFSRILRNEAEHIGYPSNFTIYDATDSKSLLKSIIKEM 128 >gi|150007586|ref|YP_001302329.1| putative helicase [Parabacteroides distasonis ATCC 8503] gi|149936010|gb|ABR42707.1| putative helicase [Parabacteroides distasonis ATCC 8503] Length = 780 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 39/165 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 E ++ +++++ E ++ ++ + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 5 EYLNQLNESQREAVVYNE--GPSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 62 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ I +T L Sbjct: 63 NKAAREMKERIAAITGD-------------------------------------QTARRL 85 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ S+F I D SK L++ K Sbjct: 86 WMGTFHSIFSRILRNEAEHIGYPSNFTIYDATDSKSLLKSIIKEM 130 >gi|323351323|ref|ZP_08086979.1| exonuclease RexA [Streptococcus sanguinis VMC66] gi|322122547|gb|EFX94258.1| exonuclease RexA [Streptococcus sanguinis VMC66] Length = 1224 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++VQR++ +L S L T T AA E+ Sbjct: 29 TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDKILRGVAVSQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R + K G+ +++ + + L L + T+ AF Sbjct: 89 ER-------------------LEKELGQALKEAESPELKQHLAQQLADLPNADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ ++ + +F I + L E N E + F +++ Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDRYY---NSERQDLFSRLVKN 186 Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 + D+ R + ++ F S ++ ++++ Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWLKETFL 223 >gi|228477150|ref|ZP_04061788.1| ATP-dependent nuclease subunit A [Streptococcus salivarius SK126] gi|228251169|gb|EEK10340.1| ATP-dependent nuclease subunit A [Streptococcus salivarius SK126] Length = 1217 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 27/221 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++V+R+L ++ L T T AA E+ Sbjct: 29 TPEQIEAIYSNGSNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + +T ++ + + + R L + G + T+ AF Sbjct: 89 ERLEKRLT-------------------EQLGQVETDEERAFLSDQIAKIGTADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ Q+ ++ F I D + + E M + +L + Sbjct: 130 TQKLVNQYGYLLGVSPIFRIMTDPAEQTLMKNEVYADLFNDYMQGKDAQLFQKLVR--NF 187 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + + D++ + + F + K + ++L Sbjct: 188 AGNGKTSKAFRDLVYD-----VYNFSQATAGPEKWLRQNLL 223 >gi|257784673|ref|YP_003179890.1| UvrD/REP helicase [Atopobium parvulum DSM 20469] gi|257473180|gb|ACV51299.1| UvrD/REP helicase [Atopobium parvulum DSM 20469] Length = 1165 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 71/199 (35%), Gaps = 39/199 (19%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTH 70 T ++ + +V+A AGSGKT L QR++ L + L +T Sbjct: 7 TPGQEKTIKTLDKPLFVAAGAGSGKTFTLTQRIVWALKEGSGADGKPYLSSLDQALIITF 66 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAA E+ RV E + + L + Sbjct: 67 TNAAATEIKERVREALE------------------------------KEGLHSAALQVDD 96 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + TIH C I++ L+ ++ F I D+ +L+ + + L + D + Sbjct: 97 AWISTIHGMCSRILKIHALDLDLDPEFEIIDDMTRNQLVTISIEEVLRELSQDESYAEFL 156 Query: 191 AFYEILEISNDEDIETLIS 209 + Y + IETLIS Sbjct: 157 STYAGNRDALKSRIETLIS 175 >gi|313893297|ref|ZP_07826872.1| ATP-dependent DNA helicase PcrA [Veillonella sp. oral taxon 158 str. F0412] gi|313442193|gb|EFR60610.1| ATP-dependent DNA helicase PcrA [Veillonella sp. oral taxon 158 str. F0412] Length = 729 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 57/162 (35%), Gaps = 39/162 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L K +Q + A AGSGKT +L R+ LL +P +L +T T AA Sbjct: 5 LTGLNKEQQQAVQHTEGPLLILAGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFTNKAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV ++ + + + T Sbjct: 65 KEMKSRVEGLVGDVA--------------------------------------NRIWLST 86 Query: 136 IHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+FC ++ + S+F I D S+ +I+ A K+ Sbjct: 87 FHSFCAKFLRFELNNFLGYNSNFTIYDTSDSQAVIKAALKAL 128 >gi|145596329|ref|YP_001160626.1| ATP-dependent DNA helicase PcrA [Salinispora tropica CNB-440] gi|145305666|gb|ABP56248.1| ATP-dependent DNA helicase PcrA [Salinispora tropica CNB-440] Length = 795 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D ++ + E + + A AGSGKT +L R+ LL A HP ++ +T T Sbjct: 32 LLDGLNGPQRE--AVTHAGSPLLIVAGAGSGKTRVLTHRIAYLLAARQVHPGEIIAITFT 89 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +++ + L + Sbjct: 90 NKAAGEMKERVAQLVGPRARL--------------------------------------M 111 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I++ A + S F+I D + S++L++ + Sbjct: 112 WVSTFHSACVRILRAEHEHAGLKSTFSIYDADDSRRLMQLVAREL 156 >gi|260199970|ref|ZP_05767461.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis T46] gi|289442365|ref|ZP_06432109.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis T46] gi|289415284|gb|EFD12524.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis T46] Length = 769 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 44/232 (18%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 + +D ++ + + ++ + A AGSGKT +L +R+ L+ A +L +T Sbjct: 18 QLLDGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV+ ++ KAR+ Sbjct: 76 TNKAAAEMRERVVGLVG---------------------------EKARY----------- 97 Query: 131 LKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + V T H+ C I++ + S+F+I D + S++L++ + I + L Sbjct: 98 MWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLA 157 Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 A + D ++ + + L ++R++ + Sbjct: 158 NAISNLKNELIDP--HQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDF 207 >gi|168334212|ref|ZP_02692415.1| ATP-dependent DNA helicase PcrA [Epulopiscium sp. 'N.t. morphotype B'] Length = 731 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 38/161 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 ++ ++ + A AGSGKT +L QR+ L+ + P +L +T T AA Sbjct: 1 MNLNDRQKKAVQHVNGPLLILAGAGSGKTRVLTQRIANLIENHQVQPWEILAITFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + + + + T Sbjct: 61 AEMRERMTNDVGE-------------------------------------DVLKNMWIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ C I+++F T +F I D + K I++ K Sbjct: 84 FHSMCVRILRRFGESIGYTKYFTIYDSAEQKITIKDVMKEM 124 >gi|150397238|ref|YP_001327705.1| UvrD/REP helicase [Sinorhizobium medicae WSM419] gi|150028753|gb|ABR60870.1| UvrD/REP helicase [Sinorhizobium medicae WSM419] Length = 850 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 76/202 (37%), Gaps = 43/202 (21%) Query: 6 SFQEHSETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63 + ++ ++ D +S EQ A + V A AG+GKT +L R+ +L A PS Sbjct: 33 AARDKAQRPDYLSGLNPEQREAVEALEGPVLVLAGAGTGKTRVLTTRIAHILSTGRAFPS 92 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L +T T AA EM R+ ++ Sbjct: 93 QILAVTFTNKAAREMKERIGVLVGHAVE-------------------------------- 120 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 G + T H+ ++++ + S F I D + +LI++ + + LD Sbjct: 121 -----GMPWLGTFHSIGVKLLRRHAELVGLRSDFTILDTDDVVRLIKQ----LIQAEGLD 171 Query: 184 NNEELKKAFYEILEISNDEDIE 205 + K F +++ ++ ++ Sbjct: 172 DKRWPAKQFAGMIDTWKNKGLD 193 >gi|324991607|gb|EGC23540.1| exonuclease RexA [Streptococcus sanguinis SK353] Length = 1224 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++VQR++ +L S L T T AA E+ Sbjct: 29 TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R + K G+ +++ + + L L + T+ AF Sbjct: 89 ER-------------------LEKELGQALKEAESPELKQHLAQQLADLPNADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ ++ + +F I + L E + E + F +++ Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDRYY---DSERQALFSRLVKN 186 Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 + D+ R + ++ F S ++ +E++ Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWLEETFL 223 >gi|320449643|ref|YP_004201739.1| ATP-dependent DNA helicase PcrA [Thermus scotoductus SA-01] gi|320149812|gb|ADW21190.1| ATP-dependent DNA helicase PcrA [Thermus scotoductus SA-01] Length = 708 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 73/220 (33%), Gaps = 53/220 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E + +++ + + +L A V A AGSGKT +V RV L+ PS +L +T Sbjct: 12 ELLRSLNEAQRQAVL--HFEGPALVVAGAGSGKTRTVVHRVAYLIAKRGVFPSEILAVTF 69 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ G Sbjct: 70 TNKAAEEMRERLKRMVKGG---------------------------------------GE 90 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LAS 179 L V T H+ I++ + + F + DE+ LI+E K L Sbjct: 91 LWVSTFHSAALRILRVYGERVGLKPGFVVYDEDDQTALIKEVLKELGLAARPGPLKALLD 150 Query: 180 IMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALK 219 + E + E+ + L+ + ALK Sbjct: 151 RAKNRGEAPESLLSELPDYYAGLSRGRLLDVLKRYEEALK 190 >gi|313202687|ref|YP_004041344.1| ATP-dependent DNA helicase pcra [Paludibacter propionicigenes WB4] gi|312442003|gb|ADQ78359.1| ATP-dependent DNA helicase PcrA [Paludibacter propionicigenes WB4] Length = 769 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 60/164 (36%), Gaps = 38/164 (23%) Query: 14 IDLISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 + +++ Q A + T A V A AGSGKT +L ++ LL PS++L LT T Sbjct: 3 LSFLNELNESQRSAVEYTEGASLVIAGAGSGKTRVLTYKIAYLLKNGMAPSSILALTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ +T L Sbjct: 63 KAAREMKERIAAMVGE-------------------------------------KTARYLW 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ + +F I D SK L++ K Sbjct: 86 MGTFHSVFSRILRSEAERIGYSKNFTIYDSADSKSLVKTIVKEL 129 >gi|282859649|ref|ZP_06268751.1| putative ATP-dependent helicase PcrA [Prevotella bivia JCVIHMP010] gi|282587567|gb|EFB92770.1| putative ATP-dependent helicase PcrA [Prevotella bivia JCVIHMP010] Length = 839 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 76/217 (35%), Gaps = 46/217 (21%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D ++ + E + + V A AGSGKT +L ++ LL P +L LT T Sbjct: 2 ILDDLNSYQREAVEYC--NGPSLVVAGAGSGKTRVLTYKIAYLLEKGLKPWNILALTFTN 59 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + L Sbjct: 60 KAAREMKERIAKITHS-------------------------------------HDTNRLY 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ I++ S+F I DE S+ L+ K+ + ++ D + Sbjct: 83 MGTFHSIFARILRAEAHHIGYNSNFTIYDESDSRSLL----KNIIKAMGYDEKVYRPNSV 138 Query: 193 YEILEISNDEDI---ETLISDIISNRTALKLIFFFFS 226 + + ++ + I E + +R + + +S Sbjct: 139 HHFISMAKNHLITAEEYAHDKLAIDRDKQARMPYIYS 175 >gi|262199184|ref|YP_003270393.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365] gi|262082531|gb|ACY18500.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365] Length = 787 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 +++ V A AG+GKT +LV R+ ++ P +L +T T AA EM Sbjct: 8 NPAQRKAVEHGDGPLMVLAGAGTGKTRVLVNRIAHMVDRGVPPRDILAVTFTNKAAKEMR 67 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ E++ + + + T HA Sbjct: 68 ERLRELLGMAA--------------------------------------NAMWIGTFHAT 89 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 C +++ ++ F I D + K+L+ K Sbjct: 90 CVKLLRIHGEHIGLSRDFTIFDSDDQKRLLNALIKE 125 >gi|254457061|ref|ZP_05070489.1| UvrD/REP helicase [Campylobacterales bacterium GD 1] gi|207085853|gb|EDZ63137.1| UvrD/REP helicase [Campylobacterales bacterium GD 1] Length = 905 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 14/175 (8%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 + A+AGSGKT +LV R L LL A P+ +L LT T AA EM R++ + H Sbjct: 5 NLAYEASAGSGKTFMLVVRYLSLLFKGATPNKILALTFTNKAAFEMQERIVLTLEELEHR 64 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + EI K+ G + + + +L L + K+ TI F I+++F L A+ Sbjct: 65 GE---LDEIVKVTGFSREFL-LHERKRILDEFLNSNS--KIMTIDKFFAQILRKFSLYAS 118 Query: 153 ITSHFAIADEEQSKKLIEEAKKST--------LASIMLDNNEELKKAFYEILEIS 199 + F + KL+ K L ++ L + + L F + E Sbjct: 119 LMPDFTTMSSQHELKLLSRFLKEVSVAGKKNTLITLSLQSKKRLGDIFTLLDEFY 173 >gi|260911425|ref|ZP_05918016.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 472 str. F0295] gi|260634472|gb|EEX52571.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 472 str. F0295] Length = 823 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 39/165 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 ++ +++++ E ++ +D V A AGSGKT +L ++ LL P +L LT T Sbjct: 3 NLLEKLNESQREAVVYTD--GPQLVIAGAGSGKTRVLTFKIAHLLQLGLKPWNILALTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +++ +A+ L + Sbjct: 61 NKAANEMKARIGDLVGH--------------------------EEAKRLYM--------- 85 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ + +F I DE S+ LI+ K Sbjct: 86 --GTFHSIFSRILRVEAPYIGFSPNFTIYDETDSRSLIKAICKEM 128 >gi|227499501|ref|ZP_03929608.1| ATP-dependent DNA helicase PcrA [Anaerococcus tetradius ATCC 35098] gi|227218380|gb|EEI83631.1| ATP-dependent DNA helicase PcrA [Anaerococcus tetradius ATCC 35098] Length = 731 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 39/164 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 ++L ++ V A AGSGKT +L + L+ P ++ +T T Sbjct: 1 MNLDGLNNMQKKAVLHDKGPLLVLAGAGSGKTRVLTTSIAYLIEEKGIDPRNIIAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +++ L Sbjct: 61 KAANEMKQRISKLLNMDV--------------------------------------SHLW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I++ + +F I D + LI+E Sbjct: 83 IGTFHSICARILRMNIDKIGYDRNFTIYDTSDQRTLIKEIIDEL 126 >gi|256839771|ref|ZP_05545280.1| ATP-dependent DNA helicase PcrA [Parabacteroides sp. D13] gi|256738701|gb|EEU52026.1| ATP-dependent DNA helicase PcrA [Parabacteroides sp. D13] Length = 778 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 39/165 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 E ++ +++++ E ++ ++ + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 3 EYLNQLNESQREAVVYNE--GPSLVVAGAGSGKTRVLTYKIAYLLQLGLPPYSILALTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ I +T L Sbjct: 61 NKAAREMKERIAAITGD-------------------------------------QTARRL 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ S+F I D SK L++ K Sbjct: 84 WMGTFHSIFSRILRNEAEHIGYPSNFTIYDATDSKSLLKSIIKEM 128 >gi|117927584|ref|YP_872135.1| ATP-dependent DNA helicase PcrA [Acidothermus cellulolyticus 11B] gi|117648047|gb|ABK52149.1| ATP-dependent DNA helicase PcrA [Acidothermus cellulolyticus 11B] Length = 763 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 63/194 (32%), Gaps = 40/194 (20%) Query: 12 ETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 + DL+ +Q A V A AGSGKT +L +R+ LL PS +L +T Sbjct: 16 DVADLLDDLNPQQRAAVVHSGGPLLVVAGAGSGKTRVLTRRIAYLLRARGVAPSEILAIT 75 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ ++ + Sbjct: 76 FTNKAAGEMKRRLDGMVGRLAQ-------------------------------------- 97 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + V T HA C ++++ I S F I D + +L+ + L Sbjct: 98 AMWVMTFHAACVRMLRENARRIGIRSSFTIYDAADAVRLMTLVCRELDLDPRRYPPRSLS 157 Query: 190 KAFYEILEISNDED 203 + DED Sbjct: 158 AQISNLKNELIDED 171 >gi|319789207|ref|YP_004150840.1| UvrD/REP helicase [Thermovibrio ammonificans HB-1] gi|317113709|gb|ADU96199.1| UvrD/REP helicase [Thermovibrio ammonificans HB-1] Length = 709 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 93/241 (38%), Gaps = 58/241 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E + ++ ++ E +L D V A AGSGKT ++ +V ++ P +L +T Sbjct: 3 ELLKTLNPSQREAVLHFD--SPLLVLAGAGSGKTRVITFKVAYMVKELRFEPERILAVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV +++ + Sbjct: 61 TNKAAREMKERVEQLLGRSVPVL------------------------------------- 83 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LAS 179 V T H+FC ++++ E ++ F I D E K+L+ E K L++ Sbjct: 84 --VSTFHSFCVRLLRRHAEEVGLSREFVILDGEDRKRLLSEVVKELNLDPERYSPSSLSN 141 Query: 180 IMLDNNEELKKAFYEILEISNDEDIETLISDIISNR-TALKLIFFFFSYLWRRKIIEKSL 238 ++ + +K Y + +S + D + ++ + R L + F L+ R+++ + Sbjct: 142 LVSN----VKNGLYSLEGLSVEFDKFGQLFELYNRRLRELNAVDFDDLLLYGRELLSREE 197 Query: 239 W 239 W Sbjct: 198 W 198 >gi|237746997|ref|ZP_04577477.1| DNA helicase II [Oxalobacter formigenes HOxBLS] gi|229378348|gb|EEO28439.1| DNA helicase II [Oxalobacter formigenes HOxBLS] Length = 762 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 80/225 (35%), Gaps = 46/225 (20%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +++ EQL A P++SA + A AGSGKT +L R+ LL S ++ +T T Sbjct: 3 NMLENLNPEQLAAVTLPSQSALILAGAGSGKTRVLTTRIAWLLKTGQVSTSGIMAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ + A GL Sbjct: 63 KAAKEMMSRLSTLFPA--------------------------------------NTRGLW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H C +++ EA + F I D + I K L + +D+ + + Sbjct: 85 IGTFHGLCNRLLRLHYREAALPQAFNILDTQDQLSTI----KRLLKTNNIDDEKFPPRNL 140 Query: 193 YEILEISNDEDIETLISDIISN--RTALKLIFFFFSYLWRRKIIE 235 + + + + + + R ++L + R +++ Sbjct: 141 MYFINGAKERGFRASVIEAQDDYERKMVELYGLYEEQCQREGVVD 185 >gi|197116476|ref|YP_002136903.1| ATP-dependent DNA helicase UvrD/REP [Geobacter bemidjiensis Bem] gi|197085836|gb|ACH37107.1| ATP-dependent DNA helicase UvrD/REP [Geobacter bemidjiensis Bem] Length = 732 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 67/190 (35%), Gaps = 44/190 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L + ++ V A AGSGKT ++V R+ L+ +L +T T A Sbjct: 4 LHNLNPPQKEAVLHGEGPLLVLAGAGSGKTRVIVHRIAYLIHERGVPAWQILGVTFTNKA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ G+ P + Sbjct: 64 AGEMRERLAHMLG-----------------DGELPL----------------------IS 84 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C I++ S+FAI D+ +KL+++ A + LD KA Sbjct: 85 TFHSTCARILRSEIRHLGYDSNFAIYDDRDCEKLLKDCA----AELNLDEKRYPAKALAG 140 Query: 195 ILEISNDEDI 204 L+ ++ + Sbjct: 141 ALDEFKNQGL 150 >gi|255283739|ref|ZP_05348294.1| ATP-dependent helicase PcrA [Bryantella formatexigens DSM 14469] gi|255265804|gb|EET59009.1| ATP-dependent helicase PcrA [Bryantella formatexigens DSM 14469] Length = 594 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 39/160 (24%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76 + + ++ + A AGSGKT +L RV L+ P +L +T T AA Sbjct: 6 NLNEMQREAVLHTEGPLLILAGAGSGKTRVLTHRVAYLIEEKGVKPWNILAITFTNKAAG 65 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV + + G + V T Sbjct: 66 EMRERVDNLAGPEA--------------------------------------GSVWVSTF 87 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ C I+++F ++F I D + K L+++ K Sbjct: 88 HSLCVRILRRFIDRLGYENNFTIYDTDDQKSLMKDICKKL 127 >gi|323342307|ref|ZP_08082539.1| UvrD/REP helicase subfamily [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463419|gb|EFY08613.1| UvrD/REP helicase subfamily [Erysipelothrix rhusiopathiae ATCC 19414] Length = 1040 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 81/199 (40%), Gaps = 27/199 (13%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAA 74 + + +Q ++ VSA+AG+GKT +L+ R++ R++ N + +T T+AA Sbjct: 1 MTTYNPQQQQAIEALNQNVIVSASAGAGKTTVLIARLMKRIIRDNVRIDEVCAMTFTEAA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM R+L + N + + ++ Sbjct: 61 ASEMKTRLLASL-----------------------NDEYRKHESDFIAEQISLVETAQIS 97 Query: 135 TIHAFCEAIMQQFPLEANITSHFA--IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 TIH+FC I++ + + A I D+ Q+K L +A + T + ++ E LK Sbjct: 98 TIHSFCLTIIKNYGYIIGVNPSRADNILDDAQTKLLQRQAMRKTFDQWLQNDYENLKYLL 157 Query: 193 YEILEISND-EDIETLISD 210 D + +E I D Sbjct: 158 DVFSTNPLDYKSLENAIYD 176 >gi|257061893|ref|YP_003139781.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8802] gi|256592059|gb|ACV02946.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8802] Length = 781 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 21/195 (10%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 D ++Q + Q A + V A AGSGKT L R+ L+ P ++L +T T Sbjct: 10 DFLAQLNTSQRRAVEHFCGPLLVVAGAGSGKTRALTYRIAHLISYHQVEPESILAVTFTN 69 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE-TPGGL 131 AA EM R+ ++ K G + + + + + LL + + T L Sbjct: 70 KAAREMKERIEKLFAQEMAF----------KKHGIRFDLLNEYEQKQLLSKVYKSTTKKL 119 Query: 132 KVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 + T H+ C I++ ++ E +F+I DE ++ L++ L + D Sbjct: 120 WIGTFHSLCTRILRYDINKYQDERGRQWQRNFSIFDESDAQSLVKNIVTKQLN--LDDKK 177 Query: 186 EELKKAFYEILEISN 200 + + Y+I N Sbjct: 178 FDPRSVRYQISNAKN 192 >gi|25010945|ref|NP_735340.1| exonuclease RexA [Streptococcus agalactiae NEM316] gi|77413173|ref|ZP_00789372.1| reticulocyte binding protein [Streptococcus agalactiae 515] gi|81588835|sp|Q8E5T9|ADDA_STRA3 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|23095324|emb|CAD46535.1| unknown [Streptococcus agalactiae NEM316] gi|77160791|gb|EAO71903.1| reticulocyte binding protein [Streptococcus agalactiae 515] Length = 1207 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 29/218 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++V+R+L LL +L T T AA E+ Sbjct: 29 TPEQIEAIYTFGNNVLVSASAGSGKTFVMVERILDKLLRGVPIDSLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I + ++ + L L + T+ AF Sbjct: 89 ERLEKKI-------------------NESLKSAESDDLKQFLTQQLVGIQTADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-E 197 + I+ Q+ I+ F I D+ + + E + M N +F +++ Sbjct: 130 TQKIVNQYGYTLGISPIFRILQDKNEQDVIKNEVYADLFSDYMTGKNAA---SFIKLVKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 S + +++ K+ F S ++ ++ Sbjct: 187 FSGNRKDSKAFREMV-----YKVYAFSQSTDNPKRWMQ 219 >gi|317476225|ref|ZP_07935476.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA] gi|316907636|gb|EFV29339.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA] Length = 760 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 58/163 (35%), Gaps = 38/163 (23%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 D I + Q A + V A AGSGKT +L ++ LL + P +L LT T Sbjct: 3 DYIQELNEGQRAAVLYNDGPSLVIAGAGSGKTRVLTYKIAYLLENDYQPWNILALTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + + +ARHL + Sbjct: 63 AAREMKERIARQVG--------------------------VERARHL-----------WM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I+ ++ TS F I D SK L+ K Sbjct: 86 GTFHSIFLRILHAEAVQIGFTSRFTIYDTADSKSLLRSIIKEM 128 >gi|116669378|ref|YP_830311.1| ATP-dependent DNA helicase PcrA [Arthrobacter sp. FB24] gi|116609487|gb|ABK02211.1| ATP-dependent DNA helicase PcrA [Arthrobacter sp. FB24] Length = 830 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 45/196 (22%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 E + ++ + E + + + A AGSGKT +L R+ L+ AH +L +T Sbjct: 57 ELLQGLNPQQEEAVK--HTGGALLIVAGAGSGKTRVLSNRIAYLIATRRAHHGEILAITF 114 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM R+ ++ + + Sbjct: 115 TNKAAAEMRERIEALVGGRAKI-------------------------------------- 136 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + + T H+ C I++Q + S+F+I D S +L+ + KS + LD + K Sbjct: 137 MWISTFHSSCVRILRQEAANVGLKSNFSIYDSADSLRLVTQVSKS----LDLDPKKFAPK 192 Query: 191 AFYEILEISNDEDIET 206 A + +E I+ Sbjct: 193 AIQHKISALKNELIDA 208 >gi|312863341|ref|ZP_07723579.1| ATP-dependent nuclease subunit A [Streptococcus vestibularis F0396] gi|311100877|gb|EFQ59082.1| ATP-dependent nuclease subunit A [Streptococcus vestibularis F0396] Length = 1217 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 77/223 (34%), Gaps = 31/223 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++V+R+L ++ L T T AA E+ Sbjct: 29 TPEQIEAIYSNGSNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + +T ++ + + + R L + G + T+ AF Sbjct: 89 ERLEKRLT-------------------EQLGQVETDEERAFLSDQIAKIGTADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-- 196 + ++ Q+ ++ F I D + + E M + +L + Sbjct: 130 TQKLVNQYGYLLGVSPIFRIMTDPAEQTLMKNEVYADLFNDYMQGKDAQLFQKLVRNFTG 189 Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 L+ DI F + K + ++L Sbjct: 190 HSKTSTAFRDLVYDI---------YNFSQATAGPEKWLRQNLL 223 >gi|302390294|ref|YP_003826115.1| ATP-dependent DNA helicase PcrA [Thermosediminibacter oceani DSM 16646] gi|302200922|gb|ADL08492.1| ATP-dependent DNA helicase PcrA [Thermosediminibacter oceani DSM 16646] Length = 731 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 68/191 (35%), Gaps = 45/191 (23%) Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++ +S EQ A + P + A AGSGKT +L R+ L+ P +++ +T T Sbjct: 1 MNYLSDLNEEQRKAVTHPGGPLLILAGAGSGKTRVLTYRIAYLIEKMGVDPGSIMAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ + +L G+ Sbjct: 61 NKAAQEMKERIEK---------------------------------------LLPWARGM 81 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H+ C I++ + +F I D + LI + K ++ LD + A Sbjct: 82 LVSTFHSACVRILRSDIDKLGYNKNFIIFDTQDQLVLIRDCIK----ALGLDEKKYAPTA 137 Query: 192 FYEILEISNDE 202 + + D Sbjct: 138 VLNYIGRAKDR 148 >gi|218248831|ref|YP_002374202.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8801] gi|218169309|gb|ACK68046.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 8801] Length = 781 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 21/195 (10%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 D ++Q + Q A + V A AGSGKT L R+ L+ P ++L +T T Sbjct: 10 DFLAQLNTSQRRAVEHFCGPLLVVAGAGSGKTRALTYRIAHLISYHQVEPESILAVTFTN 69 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE-TPGGL 131 AA EM R+ ++ K G + + + + + LL + + T L Sbjct: 70 KAAREMKERIEKLFAQEMAF----------KKHGIRFDLLNEYEQKQLLSKVYKSTTKKL 119 Query: 132 KVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 + T H+ C I++ ++ E +F+I DE ++ L++ L + D Sbjct: 120 WIGTFHSLCTRILRYDINKYQDERGRQWQRNFSIFDESDAQSLVKNIVTKQLN--LDDKK 177 Query: 186 EELKKAFYEILEISN 200 + + Y+I N Sbjct: 178 FDPRSVRYQISNAKN 192 >gi|111022536|ref|YP_705508.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1] gi|110822066|gb|ABG97350.1| probable ATP-dependent DNA helicase [Rhodococcus jostii RHA1] Length = 828 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 88/254 (34%), Gaps = 75/254 (29%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ + A AGSGKT +L +R+ LL P +L +T T AAAEM Sbjct: 35 NPQQREAVVHAGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFTNKAAAEM 94 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ + + V T H+ Sbjct: 95 RERVAHLVGPRA--------------------------------------NSMWVSTFHS 116 Query: 139 FCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST------------------LAS 179 C I++ Q L + S+F+I D + S++L+ K L + Sbjct: 117 SCVRILRAQAALLPGLNSNFSIYDADDSRRLLTMIAKDLNIDTKRYSARLLATHISNLKN 176 Query: 180 IMLDNNEELKKA-----------------FYEILEISNDEDIETLISDIISNRTALKLIF 222 ++D ++ A + + L +N D + LI + ++ A + Sbjct: 177 ELVDPDQASADADKDPAELPRLIAKVYGHYQQRLRSANALDFDDLIGETVAMLQAFPQVA 236 Query: 223 FFFSYLWRRKIIEK 236 ++ +R ++++ Sbjct: 237 EYYRRRFRHVLVDE 250 >gi|261315587|ref|ZP_05954784.1| UvrD/REP helicase [Brucella pinnipedialis M163/99/10] gi|261304613|gb|EEY08110.1| UvrD/REP helicase [Brucella pinnipedialis M163/99/10] Length = 580 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 42/198 (21%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q+H E L ++ V A AG+GKT +L R+ +L A+PS +L Sbjct: 6 QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 65 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ ++ Sbjct: 66 AVTFTNKAAREMKERIGHLVGGAVE----------------------------------- 90 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ ++++ N+TS F I D + +LI++ + + LD+ Sbjct: 91 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 144 Query: 187 ELKKAFYEILEISNDEDI 204 + F +++ ++ Sbjct: 145 WPARTFANMIDGWKNKGF 162 >gi|294621038|ref|ZP_06700230.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium U0317] gi|291599352|gb|EFF30377.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium U0317] Length = 326 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 +E ++ ++ + E +L +D + A AGSGKT +L R+ L+ +P +L +T Sbjct: 5 AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV I+ + Sbjct: 63 FTNKAAKEMKERVNAILASGGE-------------------------------------- 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ +F I D + L++ K Sbjct: 85 DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 131 >gi|116071601|ref|ZP_01468869.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. BL107] gi|116065224|gb|EAU70982.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. BL107] Length = 798 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 23/176 (13%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + ++ Q A D V A AGSGKT L R+ L+ A P +L +T T Sbjct: 1 MSFLAGLNDAQRRAVDHHQGPLLVVAGAGSGKTRALTHRIAHLIGEHGADPGQILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ + ++ + P + I + L Sbjct: 61 NKAAREMKERLELLLA------QRLAQSQFGQPWSTLPPVEQRQLRSRIYREITK---EL 111 Query: 132 KVQTIHAFCEAIMQQFPLEAN--ITSH-------FAIADEEQSKKLIEEAKKSTLA 178 + T HA +++ + + F+I DE ++ L++E L Sbjct: 112 WIGTFHALFARMLR---FDIDKFRDPDGLTWTKQFSIYDEADAQSLVKEIVTQELQ 164 >gi|258591574|emb|CBE67875.1| DNA helicase II [NC10 bacterium 'Dutch sediment'] Length = 729 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 55/157 (35%), Gaps = 31/157 (19%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 + V A AGSGKT ++ +R+ L+ P +L +T T AA EM Sbjct: 11 NPRQAEAVLHTQGPLLVLAGAGSGKTRVITRRIAYLIGHCGVAPWNILAVTFTNKAAGEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + L G+ V T H+ Sbjct: 71 KRRVADLVGQHASEPG------------------------------LRDGSGVWVGTFHS 100 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 C I+++ I S F I DE L+ + ++ Sbjct: 101 TCVRILRKHGAALGIKSSFVIYDEGDQMSLMRDCLRA 137 >gi|320095653|ref|ZP_08027311.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 178 str. F0338] gi|319977414|gb|EFW09099.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 178 str. F0338] Length = 525 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 39/157 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 ++ + A AGSGKT +L R+ LL A +L +T T AAAEM Sbjct: 33 NDRQRASVEHRGTPLLIMAGAGSGKTRVLTHRIAYLLATGQARAGQILAITFTNKAAAEM 92 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ ++ + G + V T H+ Sbjct: 93 RERIAALVG--------------------------------------DEAGRMWVSTFHS 114 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 C I++ A ++ F I D + S++L++ K+ Sbjct: 115 ACVRILRYEHEAAGLSGSFTIYDAQDSQRLMQMVLKA 151 >gi|224418267|ref|ZP_03656273.1| putative recombination protein RecB [Helicobacter canadensis MIT 98-5491] Length = 419 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 4/150 (2%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 ++A+AGSGKT+ LV R L LL A PS +L LT TK AA EM R+++ I Sbjct: 6 LCLNASAGSGKTYRLVLRYLELLFLGAKPSEILTLTFTKKAAKEMEERIVKSIQEIYQRK 65 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 ++ + + + K + L LK+ TI +F + I++ F + Sbjct: 66 NDREYIKKLEFISINDLEGIEQKITKIYYEFLR--EDLKITTIDSFFQRILKSFCWYVGV 123 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 ++F I +E+ ++I E L+ + Sbjct: 124 ENNFEIQNED--FEIITEIFLELLSDEAFE 151 >gi|297625889|ref|YP_003687652.1| ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921654|emb|CBL56211.1| ATP-dependent DNA helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 829 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 68/176 (38%), Gaps = 44/176 (25%) Query: 4 HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHP 62 H++ + + ++ + + ++ V A AGSGKT +L +R+ L+ HP Sbjct: 35 HDAHDDAEALLHGLNPPQEQAVV--HEGSPVLVVAGAGSGKTRVLTRRIAWLIAQRGVHP 92 Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122 ++L +T T AAAEM RV E++ + Sbjct: 93 GSILAITFTNKAAAEMRSRVAELVGPRTRT------------------------------ 122 Query: 123 TILETPGGLKVQTIHAFCEAIMQQ---FPLEANITSHFAIADEEQSKKLIEEAKKS 175 + V T H+ C I++ E + +F+I D+ +K+L+ + Sbjct: 123 --------MWVSTFHSACVRILRTELAEAPELGLRRNFSIYDDTDTKRLMTLVLRD 170 >gi|291277552|ref|YP_003517324.1| putative DNA helicase [Helicobacter mustelae 12198] gi|290964746|emb|CBG40601.1| putative DNA helicase [Helicobacter mustelae 12198] Length = 898 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 10/155 (6%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 R + A+AGSGKT L R L LL A A+ +L LT TK AA EM R+ + + + Sbjct: 3 ERFLTLMASAGSGKTFALTLRYLSLLFAGANAGEILALTFTKKAAGEMRERISDALEELA 62 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + + + G + + A+ + L +K+ T+ +F +++++F Sbjct: 63 SVGESKYLQNLITDYGFSK-EEILGNAKRVFGHFL--ASNIKITTLDSFFNSVVRKFCWN 119 Query: 151 ANITSHFAIADEEQSK-------KLIEEAKKSTLA 178 ++ +F I +E+S L +E + L Sbjct: 120 VGLSKNFTIKAQEESSICIMFLNSLTQEEYRDLLD 154 >gi|317124193|ref|YP_004098305.1| ATP-dependent DNA helicase PcrA [Intrasporangium calvum DSM 43043] gi|315588281|gb|ADU47578.1| ATP-dependent DNA helicase PcrA [Intrasporangium calvum DSM 43043] Length = 854 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 63/165 (38%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 ++ ++ + E ++ + A AGSGKT +L R+ LL A P +L +T T Sbjct: 79 LLEGLNPHQREAVV--HEGGPLLIVAGAGSGKTRVLTHRIAWLLGKRGAQPGQILAITFT 136 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM RV ++ +AR + Sbjct: 137 NKAAAEMRERVEALVG---------------------------PRARS-----------M 158 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + + S F+I D S +L+ + Sbjct: 159 WVMTFHSACVRILRREAAKVGMKSTFSIYDAADSLRLMSLVIRDL 203 >gi|296135521|ref|YP_003642763.1| UvrD/REP helicase [Thiomonas intermedia K12] gi|295795643|gb|ADG30433.1| UvrD/REP helicase [Thiomonas intermedia K12] Length = 781 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 66/192 (34%), Gaps = 44/192 (22%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 LI Q EQ A P +A + A AGSGKT +L R+ L+ P+ +L +T T Sbjct: 4 LIQQLNPEQHAAVTLPAENALILAGAGSGKTRVLTTRIAWLISTGQVTPAGILAVTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + G+ + Sbjct: 64 AAKEMMARLSAQLPIPVR--------------------------------------GMWI 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C ++ EA + F I D + + K L S+ +D+ K Sbjct: 86 GTFHGLCNRFLRAHWREAGLPQTFQILDIQDQLA----SIKRLLKSLNVDDERHPPKQVQ 141 Query: 194 EILEISNDEDIE 205 + + D+ + Sbjct: 142 WFINGAKDQGLR 153 >gi|238019225|ref|ZP_04599651.1| hypothetical protein VEIDISOL_01089 [Veillonella dispar ATCC 17748] gi|237863924|gb|EEP65214.1| hypothetical protein VEIDISOL_01089 [Veillonella dispar ATCC 17748] Length = 729 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 57/162 (35%), Gaps = 39/162 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L K +Q + A AGSGKT +L R+ LL +P +L +T T AA Sbjct: 5 LTGLNKEQQQAVQHTEGPLLILAGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFTNKAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV ++ + + + T Sbjct: 65 KEMKSRVEGLVGDVA--------------------------------------NRIWLST 86 Query: 136 IHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+FC ++ + S+F I D S+ +I+ A K+ Sbjct: 87 FHSFCAKFLRFELDNFLGYNSNFTIYDTSDSQAVIKAALKAL 128 >gi|254418189|ref|ZP_05031913.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3] gi|196184366|gb|EDX79342.1| UvrD/REP helicase domain protein [Brevundimonas sp. BAL3] Length = 785 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 73/194 (37%), Gaps = 44/194 (22%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70 + ++ ++ + E + A++ V A AG+GKT +L R+ +L A P LL +T Sbjct: 25 DYLEGLNPEQREAVEATE--GPVLVLAGAGTGKTRVLTTRLAHILATGRARPWELLVVTF 82 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ +I P+ + Sbjct: 83 TNKAAREMRERITHLIG---------------------PSAEGLR--------------- 106 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + T H+ I+++ + S F I D + ++++++ L + +D K Sbjct: 107 -WLGTFHSIAAQILRRHAELVGLKSSFTILDTDDQERVLKQ----LLEAANIDTKRWTPK 161 Query: 191 AFYEILEISNDEDI 204 + +++ + Sbjct: 162 SLSGLIDHWKNRGW 175 >gi|15840373|ref|NP_335410.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis CDC1551] gi|31792138|ref|NP_854631.1| ATP dependent DNA helicase UVRD1 [Mycobacterium bovis AF2122/97] gi|57116803|ref|YP_177772.1| ATP-dependent DNA helicase II UVRD1 [Mycobacterium tuberculosis H37Rv] gi|121636874|ref|YP_977097.1| putative ATP dependent DNA helicase uvrD1 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660728|ref|YP_001282251.1| putative ATP dependent DNA helicase UvrD1 [Mycobacterium tuberculosis H37Ra] gi|148822158|ref|YP_001286912.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis F11] gi|167967811|ref|ZP_02550088.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis H37Ra] gi|224989345|ref|YP_002644032.1| putative ATP dependent dna helicase [Mycobacterium bovis BCG str. Tokyo 172] gi|253800024|ref|YP_003033025.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN 1435] gi|254231256|ref|ZP_04924583.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis C] gi|289555271|ref|ZP_06444481.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN 605] gi|294996434|ref|ZP_06802125.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis 210] gi|297633471|ref|ZP_06951251.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis KZN 4207] gi|297730456|ref|ZP_06959574.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis KZN R506] gi|306775079|ref|ZP_07413416.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu001] gi|306782007|ref|ZP_07420344.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu002] gi|306783628|ref|ZP_07421950.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu003] gi|306787992|ref|ZP_07426314.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu004] gi|306792329|ref|ZP_07430631.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu005] gi|306796727|ref|ZP_07435029.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu006] gi|306802615|ref|ZP_07439283.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu008] gi|306806794|ref|ZP_07443462.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu007] gi|306966993|ref|ZP_07479654.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu009] gi|306971186|ref|ZP_07483847.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu010] gi|307078913|ref|ZP_07488083.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu011] gi|307083471|ref|ZP_07492584.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu012] gi|313657784|ref|ZP_07814664.1| ATP-dependent DNA helicase PcrA [Mycobacterium tuberculosis KZN V2475] gi|61229774|sp|P0A5A3|PCRA_MYCTU RecName: Full=ATP-dependent DNA helicase pcrA gi|61229776|sp|P0A5A4|PCRA_MYCBO RecName: Full=ATP-dependent DNA helicase pcrA gi|13880539|gb|AAK45224.1| ATP-dependent helicase PcrA [Mycobacterium tuberculosis CDC1551] gi|31617726|emb|CAD93835.1| PROBABLE ATP DEPENDENT DNA HELICASE UVRD1 [Mycobacterium bovis AF2122/97] gi|41353625|emb|CAE55341.1| PROBABLE ATP-DEPENDENT DNA HELICASE II UVRD1 [Mycobacterium tuberculosis H37Rv] gi|121492521|emb|CAL70989.1| Probable ATP dependent dna helicase uvrD1 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600315|gb|EAY59325.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis C] gi|148504880|gb|ABQ72689.1| putative ATP dependent DNA helicase UvrD1 [Mycobacterium tuberculosis H37Ra] gi|148720685|gb|ABR05310.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis F11] gi|224772458|dbj|BAH25264.1| putative ATP dependent dna helicase [Mycobacterium bovis BCG str. Tokyo 172] gi|253321527|gb|ACT26130.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN 1435] gi|289439903|gb|EFD22396.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN 605] gi|308216426|gb|EFO75825.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu001] gi|308325244|gb|EFP14095.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu002] gi|308331626|gb|EFP20477.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu003] gi|308335437|gb|EFP24288.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu004] gi|308339243|gb|EFP28094.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu005] gi|308342888|gb|EFP31739.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu006] gi|308346806|gb|EFP35657.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu007] gi|308350722|gb|EFP39573.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu008] gi|308355383|gb|EFP44234.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu009] gi|308359322|gb|EFP48173.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu010] gi|308363229|gb|EFP52080.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu011] gi|308366886|gb|EFP55737.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis SUMu012] gi|323720660|gb|EGB29738.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis CDC1551A] gi|328459767|gb|AEB05190.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis KZN 4207] Length = 771 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 44/232 (18%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 + +D ++ + + ++ + A AGSGKT +L +R+ L+ A +L +T Sbjct: 18 QLLDGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV+ ++ KAR+ Sbjct: 76 TNKAAAEMRERVVGLVG---------------------------EKARY----------- 97 Query: 131 LKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + V T H+ C I++ + S+F+I D + S++L++ + I + L Sbjct: 98 MWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLA 157 Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 A + D ++ + + L ++R++ + Sbjct: 158 NAISNLKNELIDP--HQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDF 207 >gi|300781705|ref|ZP_07091559.1| ATP-dependent DNA helicase PcrA [Corynebacterium genitalium ATCC 33030] gi|300533412|gb|EFK54473.1| ATP-dependent DNA helicase PcrA [Corynebacterium genitalium ATCC 33030] Length = 764 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 62/165 (37%), Gaps = 41/165 (24%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL +Q A + T S + A AGSGKT +L +R+ LL P +L +T T Sbjct: 4 DLTLGLNPQQKAAVEHTGSPLLIVAGAGSGKTAVLTRRIAYLLQERGVAPWEILAITFTN 63 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV +I + + Sbjct: 64 KAAAEMKERVGALIGPQAE--------------------------------------RMW 85 Query: 133 VQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I++Q + ++F I D + S++L+ K Sbjct: 86 VATFHSVCVRILRQQAQLVPGLNTNFTIYDGDDSRRLLGMIAKEM 130 >gi|186681485|ref|YP_001864681.1| ATP-dependent DNA helicase PcrA [Nostoc punctiforme PCC 73102] gi|186463937|gb|ACC79738.1| ATP-dependent DNA helicase PcrA [Nostoc punctiforme PCC 73102] Length = 773 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 45/201 (22%), Positives = 79/201 (39%), Gaps = 22/201 (10%) Query: 13 TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70 TID +S Q A + V A AGSGKT L R+ L+L + P +L +T Sbjct: 4 TIDFLSHLNPSQRQAVEHYCGPLLVVAGAGSGKTRALTYRIANLILKHRVDPENILAVTF 63 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ + + ++ + +S + K+ T Sbjct: 64 TNKAAREMKERIQRLFAEQLAMKQHGQRLDLLTEYQQTQLRSQVYKS---------TIKD 114 Query: 131 LKVQTIHAFCEAIMQQFPLEANITS-------HFAIADEEQSKKLIEEAKKSTLASIMLD 183 L T H+ I++ F +E + +F+I DE LI+E + LD Sbjct: 115 LWCGTFHSLFSRILR-FDIEKYVDEKGRKWNRNFSIFDESDVMTLIKELVN---KELNLD 170 Query: 184 NNEELKKAFYEILEISNDEDI 204 + + ++ + + ++ + Sbjct: 171 DKKFDARSVRYAISNAKNQGL 191 >gi|83858903|ref|ZP_00952425.1| DNA helicase II [Oceanicaulis alexandrii HTCC2633] gi|83853726|gb|EAP91578.1| DNA helicase II [Oceanicaulis alexandrii HTCC2633] Length = 766 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 67/191 (35%), Gaps = 44/191 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ + + A D + V A AG+GKT +L R+ +L A P +L +T T Sbjct: 21 YLDGLNPEQRAAVEAVD--GAVLVLAGAGTGKTRVLTTRLAHILATGKAQPWNILAVTFT 78 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +II Sbjct: 79 NKAAREMKERVGKIIGEQVEGLP------------------------------------- 101 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ I+++ + S F I D + +L+++ L + +D + Sbjct: 102 WLGTFHSIAAQILRRHAELVGLKSTFTILDTDDQLRLLKQ----ILEAEGIDTKRWTPRH 157 Query: 192 FYEILEISNDE 202 +++ + Sbjct: 158 LASLIDGWKNR 168 >gi|228963385|ref|ZP_04124546.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar sotto str. T04001] gi|228796279|gb|EEM43726.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar sotto str. T04001] Length = 168 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|269798061|ref|YP_003311961.1| ATP-dependent DNA helicase PcrA [Veillonella parvula DSM 2008] gi|282850288|ref|ZP_06259667.1| ATP-dependent DNA helicase PcrA [Veillonella parvula ATCC 17745] gi|269094690|gb|ACZ24681.1| ATP-dependent DNA helicase PcrA [Veillonella parvula DSM 2008] gi|282579781|gb|EFB85185.1| ATP-dependent DNA helicase PcrA [Veillonella parvula ATCC 17745] Length = 729 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 57/162 (35%), Gaps = 39/162 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L K +Q + A AGSGKT +L R+ LL +P +L +T T AA Sbjct: 5 LTGLNKEQQQAVQHTEGPLLILAGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFTNKAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV ++ + + + T Sbjct: 65 KEMKSRVEGLVGDVA--------------------------------------NRIWLST 86 Query: 136 IHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+FC ++ + S+F I D S+ +I+ A K+ Sbjct: 87 FHSFCAKFLRFEIDSFLGYNSNFTIYDTSDSQAVIKAALKAL 128 >gi|154495304|ref|ZP_02034309.1| hypothetical protein PARMER_04361 [Parabacteroides merdae ATCC 43184] gi|154085228|gb|EDN84273.1| hypothetical protein PARMER_04361 [Parabacteroides merdae ATCC 43184] Length = 770 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 64/165 (38%), Gaps = 39/165 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 E + +++++ E ++ +D + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 3 EYLKQLNESQREAVVYTD--GPSLVVAGAGSGKTRVLTYKIAYLLRQGLPPQSILALTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ + L+DE + L Sbjct: 61 NKAAREMKDRI-------ASLTDERMVR------------------------------RL 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ S+F I D SK L+ K Sbjct: 84 WMGTFHSVFSRILRSEAECIGYPSNFTIYDATDSKSLLRSIMKEM 128 >gi|124024248|ref|YP_001018555.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9303] gi|123964534|gb|ABM79290.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9303] Length = 802 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 47/216 (21%), Positives = 80/216 (37%), Gaps = 24/216 (11%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 + ++ Q A D V A AGSGKT L R+ L+ A P+ +L +T T Sbjct: 1 MSFLAGLNDAQRKAVDHHQGPLLVVAGAGSGKTRALTHRIAHLIGAHGADPAQILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL-ETPGG 130 AA EM R+ ++ S G+ + R L I E Sbjct: 61 NKAAREMKDRLELLLAQRLAESQY----------GQPWSTLPPVDQRQLRGRIFREVTKE 110 Query: 131 LKVQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 L + T H+ +++ +F ++ F+I DE ++ L++E L LD Sbjct: 111 LWIGTFHSLFARLLRFDIDKFRDAEGLSWTRQFSIYDEADAQSLVKEIVTQELQ---LDP 167 Query: 185 NEELKKAFYEILEISNDEDI--ETLISDIISNRTAL 218 K + + ++ + L + + R L Sbjct: 168 KRFEPKKVRWAISNAKNQGWLPDQLAAQVDGQRGKL 203 >gi|332169838|gb|AEE19093.1| UvrD/REP helicase [Krokinobacter diaphorus 4H-3-7-5] Length = 1046 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 47/209 (22%), Positives = 91/209 (43%), Gaps = 13/209 (6%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLE 84 ++ ++A+AGSGKT+ LV++ + LL + + LL +T T A AEM +RVL+ Sbjct: 2 TETNTFIVLNASAGSGKTYSLVKQYITTLLKSNDANKFRHLLAITFTNKAVAEMKNRVLD 61 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLKVQTIHAFCE 141 + H ++ S+ + KA+ +L IL + TI Sbjct: 62 TLKNIGHYEPGNKKPDMIDDLVSSSGLSEDVVIKKAKEILNRILHNYAAFDIVTIDTLTH 121 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I++ F + NI+S F + K L +A + +A + +D+ + + + +D Sbjct: 122 RIIRTFAKDLNISSSFEV--SLDQKTLNAQAVDALIAKVGIDDEITKVLINFALEKADDD 179 Query: 202 EDIETL-----ISDIISNRTALKLIFFFF 225 + + I++++ N LK + Sbjct: 180 KSWDVARDLLEIANLLHNENDLKALELIK 208 >gi|325676354|ref|ZP_08156033.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707] gi|325552915|gb|EGD22598.1| ATP-dependent DNA helicase [Rhodococcus equi ATCC 33707] Length = 824 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 84/219 (38%), Gaps = 54/219 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++ ++ + E +L + + A AGSGKT +L +R+ LL P +L +T T Sbjct: 30 LLEGLNPQQREAVLHA--GSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFT 87 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM RV +++ + + Sbjct: 88 NKAAAEMRERVAQLVGPRA--------------------------------------NSM 109 Query: 132 KVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLI-----------EEAKKSTLAS 179 V T H+ C I++ Q L + S+F+I D + S++L+ + LA+ Sbjct: 110 WVSTFHSSCVRILRAQAGLLHGLNSNFSIYDADDSRRLLTMISKDLEIDTKRYSARLLAT 169 Query: 180 IMLDNNEELKKAFYEILEISND-EDIETLISDIISNRTA 217 + + EL + D D++ L++ + ++ Sbjct: 170 KISNLKNELIDPEEAAADADRDSNDLDKLVARVYAHYQQ 208 >gi|225620088|ref|YP_002721345.1| ATP-dependent DNA helicase [Brachyspira hyodysenteriae WA1] gi|225214907|gb|ACN83641.1| ATP-dependent DNA helicase [Brachyspira hyodysenteriae WA1] Length = 665 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 39/167 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 + ++ A AGSGKT ++ +R+ L+ PS +L +T T AAAEM Sbjct: 6 NEEQRQAVEHIDGPLLALAGAGSGKTRVITERIAYLIKHGVLPSQILAVTFTNKAAAEMR 65 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ +++ E P L V T H+F Sbjct: 66 ERITKLLK--------------------------------------EKPKQLVVSTFHSF 87 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNN 185 C +++ + ++F+I S+ LI + + ++ D N Sbjct: 88 CVRVLKGDIEKLGYKNNFSIYSSSDSRTLIRNILREIKINTLNYDEN 134 >gi|294793798|ref|ZP_06758935.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 3_1_44] gi|294455368|gb|EFG23740.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 3_1_44] Length = 729 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 57/162 (35%), Gaps = 39/162 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L K +Q + A AGSGKT +L R+ LL +P +L +T T AA Sbjct: 5 LTGLNKEQQQAVQHTEGPLLILAGAGSGKTKVLTVRIAHLLAQGVNPYEILAITFTNKAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV ++ + + + T Sbjct: 65 KEMKSRVEGLVGDVAT--------------------------------------RIWLST 86 Query: 136 IHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+FC ++ + S+F I D S+ +I+ A K+ Sbjct: 87 FHSFCAKFLRFELDNFLGYNSNFTIYDTSDSQAVIKAALKAL 128 >gi|182415966|ref|YP_001821032.1| UvrD/REP helicase [Opitutus terrae PB90-1] gi|177843180|gb|ACB77432.1| UvrD/REP helicase [Opitutus terrae PB90-1] Length = 668 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 66/194 (34%), Gaps = 39/194 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 E ID +Q EQ A V A AGSGKT L RV LL P +L Sbjct: 11 EQIPPIDFRAQLNDEQFAAVTAEPGPLLVLAGAGSGKTRTLTYRVAYLLSRGVKPGEILL 70 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T AA EM HRV ++ Sbjct: 71 LTFTNKAAKEMLHRVQDLTGIE-------------------------------------- 92 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 P T H+ ++ + + +F I D ++S+ L+++A + D Sbjct: 93 PQRFWGGTFHSLGHRALRIYGDAIGLPKNFTILDADESESLLKQAVEHEDKLFFKDKTNP 152 Query: 188 LKKAFYEILEISND 201 +++L ++ + Sbjct: 153 RPGPLFDVLSLARN 166 >gi|224024112|ref|ZP_03642478.1| hypothetical protein BACCOPRO_00831 [Bacteroides coprophilus DSM 18228] gi|224017334|gb|EEF75346.1| hypothetical protein BACCOPRO_00831 [Bacteroides coprophilus DSM 18228] Length = 793 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 39/167 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 + +D +++ + +L +D + V A AGSGKT +L ++ LL P ++L LT Sbjct: 1 MANYLDELNEGQRAAVLYND--GPSLVIAGAGSGKTRVLTYKIAYLLDQGYKPWSILALT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ + Sbjct: 59 FTNKAAREMKERIARQVGE-------------------------------------NLAR 81 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L + T H+ I++ +S+F I D SK L++ + Sbjct: 82 YLWMGTFHSIFSRILRAEADAIGFSSNFTIYDASDSKSLVKSIIREM 128 >gi|162449161|ref|YP_001611528.1| ATP-depentend DNA helicase [Sorangium cellulosum 'So ce 56'] gi|161159743|emb|CAN91048.1| ATP-depentend DNA helicase [Sorangium cellulosum 'So ce 56'] Length = 820 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 68/199 (34%), Gaps = 41/199 (20%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 + + AS + A AGSGKT ++V R+ L++ + P +L +T T AA EM Sbjct: 25 NEPQARAASHAAGPLLIFAGAGSGKTRVIVYRIANLIVTHRVPPYRILAVTFTNKAATEM 84 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +I L V T HA Sbjct: 85 KRRLEGLIGPDIVKD-------------------------------------LWVGTFHA 107 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEELKKAFYEILE 197 C ++++ A + +F I D++ + ++ K L + L + E E Sbjct: 108 VCARLLRRHHEAAGLDKNFIIYDDDDQRAVMNRVLKELNLDDRRYPPRQVLSRIHAEKQE 167 Query: 198 ISNDEDIET--LISDIISN 214 + E D I+ Sbjct: 168 GRGPAEFERKGYFDDAIAR 186 >gi|29830006|ref|NP_824640.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680] gi|29607116|dbj|BAC71175.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680] Length = 861 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 59/162 (36%), Gaps = 39/162 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L ++++ + A AGSGKT +L R+ LL + HP +L +T T A Sbjct: 70 LHGLNENQRAAVVHAGSPLLIVAGAGSGKTRVLTHRIAHLLGERHVHPGQILAITFTNKA 129 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +++ + + V Sbjct: 130 AGEMKERVEQLVGPRA--------------------------------------NAMWVM 151 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ C I+++ TS F+I D SK+L+ + Sbjct: 152 TFHSACVRILRRESKRLGFTSSFSIYDAADSKRLMALVCRDL 193 >gi|258514071|ref|YP_003190293.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum acetoxidans DSM 771] gi|257777776|gb|ACV61670.1| ATP-dependent DNA helicase PcrA [Desulfotomaculum acetoxidans DSM 771] Length = 737 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 59/166 (35%), Gaps = 41/166 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70 E + ++ ++E + D + A AGSGKT +L R+ LLL P +L +T Sbjct: 12 EILAGLNPVQAEAVRHVD--GPLLILAGAGSGKTRVLTHRIAHLLLSEKVSPFNILAITF 69 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV I+ + Sbjct: 70 TNKAALEMRERVAAILPGVAR--------------------------------------D 91 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L V T H+ C I+++ F++ DE LI++ K Sbjct: 92 LWVATFHSTCLKILRRDGQLLGYGQDFSVYDEGDRHTLIKDCIKEL 137 >gi|308172547|ref|YP_003919252.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens DSM 7] gi|307605411|emb|CBI41782.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens DSM 7] gi|328552312|gb|AEB22804.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens TA208] gi|328910656|gb|AEB62252.1| ATP-dependent DNA helicase [Bacillus amyloliquefaciens LL3] Length = 739 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 71/197 (36%), Gaps = 45/197 (22%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 ++ + ++ + E + +D + A AGSGKT +L R+ L+ + P +L + Sbjct: 5 SNQLLSGLNPVQQEAVKTTD--GPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAI 62 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV I+ + Sbjct: 63 TFTNKAAREMKERVESILGPGA-------------------------------------- 84 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + + T H+ C I+++ I +F+I D +I K L +D + Sbjct: 85 DEIWISTFHSMCVRILRRDIDRIGINRNFSILDTADQLSVI----KGILKERNIDPKKFD 140 Query: 189 KKAFYEILEISNDEDIE 205 ++ + + +E IE Sbjct: 141 PRSILGSISSAKNELIE 157 >gi|218283946|ref|ZP_03489814.1| hypothetical protein EUBIFOR_02410 [Eubacterium biforme DSM 3989] gi|218215525|gb|EEC89063.1| hypothetical protein EUBIFOR_02410 [Eubacterium biforme DSM 3989] Length = 1036 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 31/194 (15%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHR 81 ++ + VSA+AGSGKT +LV+R+ +L+L + ++L +T TK AAAEM R Sbjct: 7 QKKAIDIRNTNVVVSASAGSGKTAVLVERLCQLVLKDHISIDSILAMTFTKDAAAEMKAR 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 +L + ++P + + LL T + TI +FC Sbjct: 67 LLSKLK-------------------EQPKTDYILQQMALLETA-------SISTIDSFCL 100 Query: 142 AIMQQFPLEANITSHFA--IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 +I+Q + + I+ + A Q++ E A K + + L+ +LK F+ Sbjct: 101 SIVQNYYYKIPISYTMSKQTASSAQTRIAFENAYKHAIQDLDLNAYTQLKMYFHSF--GK 158 Query: 200 NDEDIETLISDIIS 213 +EDI+ I DI++ Sbjct: 159 TEEDIQKYIEDILA 172 >gi|312114573|ref|YP_004012169.1| UvrD/REP helicase [Rhodomicrobium vannielii ATCC 17100] gi|311219702|gb|ADP71070.1| UvrD/REP helicase [Rhodomicrobium vannielii ATCC 17100] Length = 793 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 + +EQ A + V A AG+GKT +L R+ LL A P+ +L +T T Sbjct: 33 YLQGLNAEQREAVERLDGPVLVLAGAGTGKTRVLTTRMAHLLWTHRARPNEILAVTFTNK 92 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ G + Sbjct: 93 AAREMKERVGKLVGGAVE-------------------------------------GMPWL 115 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ I+++ ++ +F I D + +LI++ + + LD+ + Sbjct: 116 GTFHSIGMRILRRHAELVGLSQNFTILDVDDQIRLIKQ----IIQAERLDDKRWPARQLA 171 Query: 194 EILEISNDEDI 204 +++ ++ + Sbjct: 172 GLIDGWKNKGL 182 >gi|315221764|ref|ZP_07863678.1| ATP-dependent nuclease subunit A [Streptococcus anginosus F0211] gi|315189150|gb|EFU22851.1| ATP-dependent nuclease subunit A [Streptococcus anginosus F0211] Length = 1237 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 80/222 (36%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++VQR++ +L L T T AA+E+ Sbjct: 40 TPEQIEAIYSSGQNILVSASAGSGKTFVMVQRIVDQILRGVRIDQLFISTFTVKAASELK 99 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + ++ +D+ + + L L + T+ +F Sbjct: 100 ERLEKELSKALKATDD-------------------EELKQHLAQQLADIPNADIGTMDSF 140 Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ ++ + +F I + L E + + L F ++++ Sbjct: 141 TQKVLNKYGYLLELAPNFRILQSASEQLLLQNEVFEQVFEEFYQSDQAAL---FKKLVKN 197 Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 + D++ R + K+ F S + K Sbjct: 198 FTGQR-----KDLLGFREQVYKIYAFLQSTSSPIAWLGKDFL 234 >gi|254304235|ref|ZP_04971593.1| superfamily I ATP-dependent helicase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324427|gb|EDK89677.1| superfamily I ATP-dependent helicase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 737 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 41/166 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 + ++ ++ + E AS S + A AGSGKT + R+ ++ P ++L + Sbjct: 2 NLNLLEKLNDKQRE--AASQIDGSILILAGAGSGKTRTITYRIAHMIENVGISPYSILAV 59 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV ++ + Sbjct: 60 TFTNKAAKEMRERVEGLVGDIAKAC----------------------------------- 84 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + T H+F +++ + E +F I D + K++++ K Sbjct: 85 ---TISTFHSFGMRLLRMYASEVGYNPNFTIYDTDDQKRIVKAILK 127 >gi|312138580|ref|YP_004005916.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi 103S] gi|311887919|emb|CBH47231.1| UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus equi 103S] Length = 824 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 84/219 (38%), Gaps = 54/219 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++ ++ + E +L + + A AGSGKT +L +R+ LL P +L +T T Sbjct: 30 LLEGLNPQQREAVLHA--GSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFT 87 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM RV +++ + + Sbjct: 88 NKAAAEMRERVAQLVGPRA--------------------------------------NSM 109 Query: 132 KVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLI-----------EEAKKSTLAS 179 V T H+ C I++ Q L + S+F+I D + S++L+ + LA+ Sbjct: 110 WVSTFHSSCVRILRAQAGLLHGLNSNFSIYDADDSRRLLTMISKDLEIDTKRYSARLLAT 169 Query: 180 IMLDNNEELKKAFYEILEISND-EDIETLISDIISNRTA 217 + + EL + D D++ L++ + ++ Sbjct: 170 KISNLKNELIDPEEAAADADRDSNDLDKLVARVYAHYQQ 208 >gi|154685156|ref|YP_001420317.1| PcrA [Bacillus amyloliquefaciens FZB42] gi|154351007|gb|ABS73086.1| PcrA [Bacillus amyloliquefaciens FZB42] Length = 739 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 71/197 (36%), Gaps = 45/197 (22%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 ++ + ++ + E + +D + A AGSGKT +L R+ L+ + P +L + Sbjct: 5 SNQLLSGLNPVQQEAVKTTD--GPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAI 62 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV I+ + Sbjct: 63 TFTNKAAREMKERVESILGPGA-------------------------------------- 84 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + + T H+ C I+++ I +F+I D +I K L +D + Sbjct: 85 DEIWISTFHSMCVRILRRDIDRIGINRNFSILDTADQLSVI----KGILKERNIDPKKFD 140 Query: 189 KKAFYEILEISNDEDIE 205 ++ + + +E IE Sbjct: 141 PRSILGSISSAKNELIE 157 >gi|289753005|ref|ZP_06512383.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis EAS054] gi|289693592|gb|EFD61021.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis EAS054] Length = 650 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 44/232 (18%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 + +D ++ + + ++ + A AGSGKT +L +R+ L+ A +L +T Sbjct: 18 QLLDGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV+ ++ KAR+ Sbjct: 76 TNKAAAEMRERVVGLVG---------------------------EKARY----------- 97 Query: 131 LKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + V T H+ C I++ + S+F+I D + S++L++ + I + L Sbjct: 98 MWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLA 157 Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 A + D ++ + + L ++R++ + Sbjct: 158 NAISNLKNELIDP--HQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDF 207 >gi|306822880|ref|ZP_07456256.1| possible ATP-dependent DNA helicase [Bifidobacterium dentium ATCC 27679] gi|304553512|gb|EFM41423.1| possible ATP-dependent DNA helicase [Bifidobacterium dentium ATCC 27679] Length = 885 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 39/156 (25%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 LI +Q A ++ + A AGSGKT +L +R+ LL S +L +T T A Sbjct: 23 LIKDLNPQQSEAVKYYGQALLIGAGAGSGKTRVLTRRIAWLLAHGIWASQILAITFTNKA 82 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM R+ ++ + + + Sbjct: 83 AAEMRERLAALVGPEAE--------------------------------------RMWIS 104 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H+ C I+++ + + S F+I D S++LI+ Sbjct: 105 TFHSACVRILRRDGDQIGLKSGFSIYDTADSERLIK 140 >gi|225870333|ref|YP_002746280.1| ATP-dependent exonuclease subunit A [Streptococcus equi subsp. equi 4047] gi|225699737|emb|CAW93495.1| putative ATP-dependent exonuclease subunit A [Streptococcus equi subsp. equi 4047] Length = 1213 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 87/236 (36%), Gaps = 30/236 (12%) Query: 7 FQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 Q+ D + ++Q+ A ++ VSA+AGSGKT ++V+R+L +L L Sbjct: 16 LQQEEALSDKTHKRTAQQIEAIYSSGQNILVSASAGSGKTFVMVERILDKILRGIPVDCL 75 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 T T AA E+ R+ + + + + + + L L Sbjct: 76 FISTFTVKAATELIERIEKKLHTAIAETQDY-------------------QLKAYLNDQL 116 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDN 184 + + T+ AF + ++ Q I+ HF I D+ + L E + M Sbjct: 117 QALSQADIGTMDAFAQKLVHQHGYVLGISPHFRIIQDKAEQDILKREVFRQVFEDYMSQT 176 Query: 185 NEELKKAFYEIL-EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + KAF +++ S + +I+ + + F S + + Sbjct: 177 D---NKAFIQLVQNFSGRRKDSSAFREIVDS-----IYAFSQSTANPSSWLAEVFL 224 >gi|167039196|ref|YP_001662181.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X514] gi|300913209|ref|ZP_07130526.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X561] gi|307723777|ref|YP_003903528.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X513] gi|166853436|gb|ABY91845.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X514] gi|300889894|gb|EFK85039.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X561] gi|307580838|gb|ADN54237.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter sp. X513] Length = 711 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 56/162 (34%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L + ++ + A AGSGKT +L R+ L+ PS +L +T T A Sbjct: 5 LNNLNDKQKEAVMTTEGPLLILAGAGSGKTRVLTHRIAYLIKEKKISPSNILAITFTNKA 64 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +++ G L V Sbjct: 65 AEEMKTRVEDLLGYI---------------------------------------GDLWVS 85 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ C I+++ + +F I D K LI+E K Sbjct: 86 TFHSACVRILRRDIDKIGYDRNFVIFDTTDQKALIQECLKEL 127 >gi|227892257|ref|ZP_04010062.1| ATP-dependent DNA helicase [Lactobacillus salivarius ATCC 11741] gi|227865898|gb|EEJ73319.1| ATP-dependent DNA helicase [Lactobacillus salivarius ATCC 11741] Length = 747 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 74/193 (38%), Gaps = 45/193 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 + ++ +SE +L ++ + A AGSGKT +L RV L+ +P +L +T T Sbjct: 10 LSGMNDKQSEAVLCTE--GPLLIMAGAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTN 67 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + + Sbjct: 68 KAAREMRERVNNLMGEGAE--------------------------------------DIW 89 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T HA C I+++ + F IA + + L+++ L + +D + +A Sbjct: 90 VSTFHALCVRILRRDAEKIGFNRSFTIASTSEQRTLMKQ----VLNDLNIDTKKYDPRAI 145 Query: 193 YEILEISNDEDIE 205 ++ + ++ ++ Sbjct: 146 LSVISNAKNDLLD 158 >gi|188587404|ref|YP_001918949.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352091|gb|ACB86361.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 754 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 75/198 (37%), Gaps = 39/198 (19%) Query: 5 NSFQEHSET-IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62 N Q S+ I+ + +QL A + A AG+GKT LV RV LL + P Sbjct: 102 NISQSASDFKINYPEELNPQQLEAVTYCNGPLLIIAGAGTGKTRTLVYRVSYLLESGIPP 161 Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122 +L LT T+ AA EM RV +++ Sbjct: 162 QEILLLTFTRKAAREMLERVKKLLGT---------------------------------- 187 Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 E+ +K T H+F +++++ ++ F++ D+ S+ +++ + Sbjct: 188 ---ESTDRIKGGTFHSFANNVLRRYSGLVGLSPDFSVLDQIDSQDVVDLLRTEYDFHRQE 244 Query: 183 DNNEELKKAFYEILEISN 200 + ++ F I + N Sbjct: 245 KAFPKKERIFEIISKSRN 262 >gi|25027486|ref|NP_737540.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens YS-314] gi|23492768|dbj|BAC17740.1| putative ATP-dependent DNA helicase [Corynebacterium efficiens YS-314] Length = 825 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 69/184 (37%), Gaps = 41/184 (22%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 +L + +Q A + S + A AGSGKT +L +R+ L+ HP +L +T T Sbjct: 43 ELTAGLNEQQKAAVEHIGSPLLIVAGAGSGKTAVLTRRIAYLMRYRGVHPQQILAITFTN 102 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV +++ + + Sbjct: 103 KAAAEMRERVADLVGPVAQ--------------------------------------RMW 124 Query: 133 VQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H+ C I++Q + ++F I D + S++L+ K I + L A Sbjct: 125 VATFHSVCVRILRQQAQLVQGLNTNFTIYDSDDSRRLLTMIAKDLELDIKKFSARTLSSA 184 Query: 192 FYEI 195 + Sbjct: 185 ISNL 188 >gi|259507108|ref|ZP_05750008.1| ATP-dependent helicase PcrA [Corynebacterium efficiens YS-314] gi|259165386|gb|EEW49940.1| ATP-dependent helicase PcrA [Corynebacterium efficiens YS-314] Length = 824 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 69/184 (37%), Gaps = 41/184 (22%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 +L + +Q A + S + A AGSGKT +L +R+ L+ HP +L +T T Sbjct: 42 ELTAGLNEQQKAAVEHIGSPLLIVAGAGSGKTAVLTRRIAYLMRYRGVHPQQILAITFTN 101 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV +++ + + Sbjct: 102 KAAAEMRERVADLVGPVAQ--------------------------------------RMW 123 Query: 133 VQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H+ C I++Q + ++F I D + S++L+ K I + L A Sbjct: 124 VATFHSVCVRILRQQAQLVQGLNTNFTIYDSDDSRRLLTMIAKDLELDIKKFSARTLSSA 183 Query: 192 FYEI 195 + Sbjct: 184 ISNL 187 >gi|78484473|ref|YP_390398.1| DNA-dependent helicase II [Thiomicrospira crunogena XCL-2] gi|78362759|gb|ABB40724.1| ATP-dependent DNA helicase UvrD [Thiomicrospira crunogena XCL-2] Length = 741 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 71/196 (36%), Gaps = 45/196 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S ++ ++ + + + D + A + A AGSGKT +LV R+ L + +L Sbjct: 2 DISHILNDLNDAQRDAVTVED--QHALILAGAGSGKTRVLVHRIAWLTQVMGFSAYNILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA+EM RV +I Sbjct: 60 VTFTNKAASEMRARVEALIG--------------------------------------NQ 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ + T H +++ E + F I D + K++I K L ++ LD+ + Sbjct: 82 SQGMTMGTFHGIAYRLLRTHYKEVGLPQSFQILDSDDQKRVI----KRLLKALELDDAQW 137 Query: 188 LKKAFYEILEISNDED 203 K + +E Sbjct: 138 PHKQVQAFINGEKEEG 153 >gi|309777085|ref|ZP_07672051.1| ATP-dependent DNA helicase PcrA [Erysipelotrichaceae bacterium 3_1_53] gi|308915155|gb|EFP60929.1| ATP-dependent DNA helicase PcrA [Erysipelotrichaceae bacterium 3_1_53] Length = 715 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 41/164 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +D +++ + E + D + A AGSGKT ++ R+ L+ +P+ +L +T T Sbjct: 4 LDQLNEHQLEAVQCVD--HHLRIIAGAGSGKTRVVTTRIAYLINNCGVYPNKVLAITFTN 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + + Sbjct: 62 KAAREMKERVEALLGDVAK--------------------------------------AVT 83 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + TIH+FC ++++ LE +F I D + K ++ +A K Sbjct: 84 ISTIHSFCVRLLREDILELGYPRNFTILDSDDQKSILRDAYKQM 127 >gi|317127162|ref|YP_004093444.1| ATP-dependent DNA helicase PcrA [Bacillus cellulosilyticus DSM 2522] gi|315472110|gb|ADU28713.1| ATP-dependent DNA helicase PcrA [Bacillus cellulosilyticus DSM 2522] Length = 760 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 42/166 (25%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 + +D +++ + E + D + A AGSGKT +L R+ L+ P ++L +T Sbjct: 7 QLLDGLNKEQGEAVKHGD--GPLLIMAGAGSGKTRVLTHRIAYLIGEKGVPPWSILAITF 64 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV I T Sbjct: 65 TNKAAREMKERV---------------------------------------ARIASTAEE 85 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T H+ C I+++ + +F I D +I+ K Sbjct: 86 IWISTFHSMCVRILRRDIDRIGTSRNFTILDSGDQLTVIKRILKEL 131 >gi|189466065|ref|ZP_03014850.1| hypothetical protein BACINT_02435 [Bacteroides intestinalis DSM 17393] gi|189434329|gb|EDV03314.1| hypothetical protein BACINT_02435 [Bacteroides intestinalis DSM 17393] Length = 784 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 55/163 (33%), Gaps = 38/163 (23%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + I + Q A + V A AGSGKT +L ++ LL P +L LT T Sbjct: 4 NYIEELNEGQRAAVLYNEGPSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + +ARHL + Sbjct: 64 AAREMKERIARQVGD--------------------------QRARHL-----------WM 86 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I+ + TS F I D SK L+ K Sbjct: 87 GTFHSIFLRILHVEAVNIGFTSQFTIYDTADSKSLMRSIIKEM 129 >gi|171912708|ref|ZP_02928178.1| UvrD/REP helicase [Verrucomicrobium spinosum DSM 4136] Length = 672 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 57/161 (35%), Gaps = 39/161 (24%) Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID ++ +Q A + P + V A AGSGKT +L RV LL P +L +T T Sbjct: 16 IDYRAELNEQQFAAVTAPAGQSLVIAGAGSGKTRVLTYRVAYLLDNGIAPENILLVTFTN 75 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 A+ EM RV ++ + L Sbjct: 76 KASREMLDRVQNLLPIET--------------------------------------NRLW 97 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T H+ ++++ + F+I D E K L+E Sbjct: 98 GGTFHSIGNRLLRKHGDRLGLRQGFSIMDREDQKDLMETVV 138 >gi|158426099|ref|YP_001527391.1| DNA helicase II [Azorhizobium caulinodans ORS 571] gi|158332988|dbj|BAF90473.1| DNA helicase II [Azorhizobium caulinodans ORS 571] Length = 835 Score = 128 bits (323), Expect = 6e-28, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 44/195 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 +D ++ + E + D V A AG+GKT +L R+ +L A+PS +L +T Sbjct: 66 PSYLDGLNPEQREAVETLD--GPVLVLAGAGTGKTRVLTTRIAHILSQGRAYPSQILAVT 123 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ ++ G Sbjct: 124 FTNKAAREMKERIHAMVGDTVE-------------------------------------G 146 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + T H+ I+++ + S F I D + +L+++ +A+ +D Sbjct: 147 MPWLGTFHSIGVRILRRHHELVGLKSGFTILDTDDQLRLLKQ----LIAAEEIDEKRWPA 202 Query: 190 KAFYEILEISNDEDI 204 + ++ + + Sbjct: 203 RMLASAIDGWKNRGL 217 >gi|296130376|ref|YP_003637626.1| ATP-dependent DNA helicase PcrA [Cellulomonas flavigena DSM 20109] gi|296022191|gb|ADG75427.1| ATP-dependent DNA helicase PcrA [Cellulomonas flavigena DSM 20109] Length = 858 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 71/194 (36%), Gaps = 45/194 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ ++ + A AGSGKT +L R+ LL + A +L +T T Sbjct: 75 LLDGLN--PQQRAAVLHAGGPLLIVAGAGSGKTRVLTHRIAHLLATHRARAGEILAITFT 132 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM RV +++ + + Sbjct: 133 NKAAAEMRERVEQLVGPSAQ--------------------------------------RM 154 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H+ C I+++ + + F+I D+ S++L+ + + LD KA Sbjct: 155 WVSTFHSACVRILRREAATLGLRTSFSIYDQADSQRLLTLVAR----ELELDPKRYPAKA 210 Query: 192 FYEILEISNDEDIE 205 + DE ++ Sbjct: 211 LGHKISALKDELVD 224 >gi|119025711|ref|YP_909556.1| ATP-dependent DNA helicase PcrA [Bifidobacterium adolescentis ATCC 15703] gi|118765295|dbj|BAF39474.1| ATP-dependent DNA helicase PcrA [Bifidobacterium adolescentis ATCC 15703] Length = 879 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 40/164 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 I+ ++ + E + ++ + A AGSGKT +L +R+ LL S++L +T T Sbjct: 11 LIEGLNPQQEEAVKYY--GQALLIGAGAGSGKTRVLTRRIAWLLAHGFWASSILAITFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R++ ++ + + Sbjct: 69 KAAAEMRERLVTLVGPEAEH--------------------------------------MW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ E + S F+I D S++L++ Sbjct: 91 ISTFHSACVRILRRDGKEIGLKSGFSIYDTADSERLVKLIAADL 134 >gi|261415584|ref|YP_003249267.1| Exodeoxyribonuclease V [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372040|gb|ACX74785.1| Exodeoxyribonuclease V [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326087|gb|ADL25288.1| exodeoxyribonuclease V, beta subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 1266 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 84/173 (48%), Gaps = 15/173 (8%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 DP++S ++ A+AG+GKT+ + V +L+ +L +T+T+ AA E+ R+ + I Sbjct: 10 DPSQSLFIEASAGTGKTYTIQLMVSKLIKLGTPLKKILIVTYTEKAAGELKDRIRKKI-- 67 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKAR-HLLITILETPGGLKVQTIHAFCEAIMQQF 147 DE+L KI ++ +S A+ L + + TIH+FC+ +++F Sbjct: 68 -----DEVLINR--KIDKSDDSEEPLSDAKIALFTKAYQDVDNAAIFTIHSFCQKALKEF 120 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +A + ++ D+++ LIE+ + + +EE K + S+ Sbjct: 121 AYDAGRPFNMSMIDDKEVNDLIEKFIRDNWSE-----DEEFKALLVNAEKTSS 168 >gi|126664590|ref|ZP_01735574.1| DNA-dependent ATPase I and helicase II [Marinobacter sp. ELB17] gi|126630916|gb|EBA01530.1| DNA-dependent ATPase I and helicase II [Marinobacter sp. ELB17] Length = 721 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 41/168 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLC 67 + S ID ++ + E + A + V A AGSGKT +LV R+ + N P+T LL Sbjct: 2 DVSYIIDGLNDAQREAVTAE--SDHLLVLAGAGSGKTRVLVHRMAWQMQVNRVPATGLLA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM HR+ E++ S Sbjct: 60 VTFTNKAAKEMRHRIEEMMNIPSR------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 GL + T H +++ +AN+ +F + D + ++++ + Sbjct: 84 --GLWIGTFHGIAHRLLRAHWKDANLPENFQVLDSDDQLRMVKRVMRE 129 >gi|33864183|ref|NP_895743.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313] gi|33635767|emb|CAE22092.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313] Length = 802 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 24/216 (11%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + ++ Q A D + A AGSGKT L R+ L+ A PS +L +T T Sbjct: 1 MSFLAGLNDAQRRAVDHHEGPLLLVAGAGSGKTRALTHRIAHLIGEHGADPSQILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL-ETPGG 130 AA EM R+ ++ S G+ + + R L I E Sbjct: 61 NKAAREMKERLELLLAQRLAQSQ----------FGQPWSTLPPVEQRQLRTRIYREVTKE 110 Query: 131 LKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 L + T HA +++ +F + + T F+I DE ++ L++E L LD Sbjct: 111 LWIGTFHALFARMLRYDIDKFKDKEGLTWTKQFSIYDEADAQSLVKEIVTQELQ---LDP 167 Query: 185 NEELKKAFYEILEISNDEDI--ETLISDIISNRTAL 218 K + + ++ + L + + R L Sbjct: 168 KRFEPKKVRWAISNAKNQGWFPDQLAAQVDGQRGKL 203 >gi|301299732|ref|ZP_07205982.1| ATP-dependent DNA helicase PcrA [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852663|gb|EFK80297.1| ATP-dependent DNA helicase PcrA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 744 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 74/193 (38%), Gaps = 45/193 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 + ++ +SE +L ++ + A AGSGKT +L RV L+ +P +L +T T Sbjct: 7 LSGMNDKQSEAVLCTE--GPLLIMAGAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + + Sbjct: 65 KAAREMRERVNNLMGEGAE--------------------------------------DIW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T HA C I+++ + F IA + + L+++ L + +D + +A Sbjct: 87 VSTFHALCVRILRRDAEKIGFNRSFTIASTSEQRTLMKQ----VLNDLNIDTKKYDPRAI 142 Query: 193 YEILEISNDEDIE 205 ++ + ++ ++ Sbjct: 143 LSVISNAKNDLLD 155 >gi|187251691|ref|YP_001876173.1| UvrD/REP helicase [Elusimicrobium minutum Pei191] gi|186971851|gb|ACC98836.1| UvrD/REP helicase [Elusimicrobium minutum Pei191] Length = 1074 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 88/198 (44%), Gaps = 4/198 (2%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAA 75 I+ ++ ++ R+ V A AG+GKT +L+ R+ L ++ N ++ LT T+ AA Sbjct: 4 ITDLQTRYEASTVTDRNIVVEAGAGTGKTTLLISRLCYLMIVKNISVERIVALTFTEKAA 63 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AE+ R+ + + + + + KI + + +LE + T Sbjct: 64 AEIKIRLSAQLQKI--IKECLSVTQKDKITLELLAHLSKEEIIIRAQRVLEFLERGFIST 121 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH FC I++ +P+EA I+ + + ++ + + + L + + ++ + + Sbjct: 122 IHGFCSYILKAYPVEAGISPSAVVDEGQRRETVFKRLWNKWLEEELGGGGPK-EEIWKRV 180 Query: 196 LEISNDEDIETLISDIIS 213 L+ N ED+ D+ Sbjct: 181 LKEINLEDLYNYAFDMAG 198 >gi|298524440|ref|ZP_07011849.1| ATP-dependent helicase [Mycobacterium tuberculosis 94_M4241A] gi|298494234|gb|EFI29528.1| ATP-dependent helicase [Mycobacterium tuberculosis 94_M4241A] Length = 695 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 44/232 (18%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 + +D ++ + + ++ + A AGSGKT +L +R+ L+ A +L +T Sbjct: 18 QLLDGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV+ ++ KAR+ Sbjct: 76 TNKAAAEMRERVVGLVG---------------------------EKARY----------- 97 Query: 131 LKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + V T H+ C I++ + S+F+I D + S++L++ + I + L Sbjct: 98 MWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLA 157 Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 A + D ++ + + L ++R++ + Sbjct: 158 NAISNLKNELIDP--HQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDF 207 >gi|113954443|ref|YP_729463.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9311] gi|113881794|gb|ABI46752.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CC9311] Length = 803 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 17/173 (9%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + ++ Q A D V A AGSGKT L R+ L+ A P+ +L +T T Sbjct: 1 MSFLAGLNDAQKRAVDHHEGPLLVVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ + ++ + P + I + L Sbjct: 61 NKAAREMKERLELLLA------QRLAQSQFGQPWSTLPPVEQRQLRTRIYREITK---EL 111 Query: 132 KVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178 + T HA +++ +F + T F+I DE ++ L++E L Sbjct: 112 WIGTFHALFARMLRFDIDKFKDPEGLTWTKQFSIYDEADAQSLVKEIVTQELQ 164 >gi|228937586|ref|ZP_04100224.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970473|ref|ZP_04131124.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977042|ref|ZP_04137445.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis Bt407] gi|228782659|gb|EEM30834.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis Bt407] gi|228789205|gb|EEM37133.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822067|gb|EEM68057.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938079|gb|AEA13975.1| DNA helicase II [Bacillus thuringiensis serovar chinensis CT-43] Length = 753 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 56/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ +++ + Sbjct: 62 VLAITFTNKAAREMRERIDKLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|229820063|ref|YP_002881589.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333] gi|229565976|gb|ACQ79827.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333] Length = 1110 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 90/204 (44%), Gaps = 15/204 (7%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA 75 + + +A+D + S +V A AGSGKT LV+RV L++ + P + + +T T+ A Sbjct: 3 LVDDAARSRIATDTSSSLFVEAGAGSGKTRSLVERVGTLVMDDGVPLAQIAAITFTEKAG 62 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AE+ R+ + E P +S +++ LE G + T Sbjct: 63 AELRDRLRGEFERVWRRARPGGPQE-------DPARSSLAE------RALEDLDGAAIGT 109 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 +H+F + I+ + P+EA + ++DE S +E + S L +LD+ E + + Sbjct: 110 LHSFAQRILARHPVEAGLPPLIEVSDEVASGVAFDE-RWSVLQRELLDDEEMAPRLLLAM 168 Query: 196 LEISNDEDIETLISDIISNRTALK 219 + + +L ++ ++ Sbjct: 169 AAGVTFDHLRSLARAFGADWDLIE 192 >gi|294791935|ref|ZP_06757083.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 6_1_27] gi|294457165|gb|EFG25527.1| ATP-dependent DNA helicase PcrA [Veillonella sp. 6_1_27] Length = 729 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 57/162 (35%), Gaps = 39/162 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L K +Q + A AGSGKT +L R+ LL +P +L +T T AA Sbjct: 5 LTGLNKEQQQAVQHTEGPLLILAGAGSGKTKVLTVRIAHLLGQGVNPYEILAITFTNKAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV ++ + + + T Sbjct: 65 KEMKSRVEGLVGDVA--------------------------------------NRIWLST 86 Query: 136 IHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+FC ++ + S+F I D S+ +I+ A K+ Sbjct: 87 FHSFCAKFLRFELDNFLGYNSNFTIYDTSDSQAVIKAALKAL 128 >gi|262282991|ref|ZP_06060758.1| exonuclease RexA [Streptococcus sp. 2_1_36FAA] gi|262261243|gb|EEY79942.1| exonuclease RexA [Streptococcus sp. 2_1_36FAA] Length = 1227 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 80/222 (36%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++VQR++ +L L T T AA E+ Sbjct: 40 TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVSIQELFISTFTVKAAGELK 99 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + ++ S + + + L L + T+ +F Sbjct: 100 ERLEKELSKALKESQD-------------------EELKEHLAQQLAAIATADIGTMDSF 140 Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ ++ + +F I + L E + +++ F ++++ Sbjct: 141 TQKLLNKYGYLLGLAPNFRILQSASEQTMLQNEVFQQLFEQYYTGEQKDI---FEKLVKN 197 Query: 199 SNDEDIETLISDIISNRTALKLIF-FFFSYLWRRKIIEKSLW 239 + +I R + I+ F S ++ ++ Sbjct: 198 FTGKK-----KNISGFRQQVYTIYQFLQSTSNPQRWLQDFFL 234 >gi|330470059|ref|YP_004407802.1| ATP-dependent DNA helicase PcrA [Verrucosispora maris AB-18-032] gi|328813030|gb|AEB47202.1| ATP-dependent DNA helicase PcrA [Verrucosispora maris AB-18-032] Length = 797 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 66/169 (39%), Gaps = 40/169 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 H + + L+ Q A S + A AGSGKT +L R+ LL A + HP ++ Sbjct: 26 HLDPLQLVEGLNGPQRDAVTHAGSPLLIVAGAGSGKTRVLTHRIAYLLAARDVHPGEIIA 85 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV +++ + L Sbjct: 86 ITFTNKAAGEMKERVAKLVGPRARL----------------------------------- 110 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I++ A + S F+I D + S++L++ + Sbjct: 111 ---MWVSTFHSACVRILRAEHEHAGLKSTFSIYDADDSRRLMQMVAREL 156 >gi|298253336|ref|ZP_06977128.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis 5-1] gi|297532731|gb|EFH71617.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis 5-1] Length = 978 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 41/175 (23%) Query: 3 YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAH 61 + + + +D ++ +S+ + P + A AGSGKT +L +R+ +L A Sbjct: 108 HSRVAVDAQKLLDGLNPQQSQAVQYDGPA--LLIGAGAGSGKTRVLTRRIAWILSQKGAW 165 Query: 62 PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121 PS +L +T T AAAEM R+ ++I + + Sbjct: 166 PSQILAITFTNKAAAEMRERLSKLIGSEA------------------------------- 194 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ + S F+I D ++L++ Sbjct: 195 -------NTMWVSTFHSACVKILRRSGQYIGLKSGFSIYDTSDCERLVKIIATEL 242 >gi|226356134|ref|YP_002785874.1| DNA helicase [Deinococcus deserti VCD115] gi|226318124|gb|ACO46120.1| putative DNA helicase UvrD [Deinococcus deserti VCD115] Length = 744 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 62/161 (38%), Gaps = 41/161 (25%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL+SQ Q A+D T A V A AGSGKT LV R+ L+ P +L +T T Sbjct: 11 DLLSQLNDTQAQAADHFTGPALVIAGAGSGKTRTLVYRIAHLIQHYGVDPGEILAVTFTN 70 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R A+HL +E L Sbjct: 71 KAAAEMRER-----------------------------------AQHL----VEGADRLW 91 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + T H+ I++ + + F I D++ +++E Sbjct: 92 MSTFHSAGVRILRAYGEHIGLKRGFVIYDDDDQSDILKEVM 132 >gi|257456155|ref|ZP_05621352.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema vincentii ATCC 35580] gi|257446241|gb|EEV21287.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema vincentii ATCC 35580] Length = 1167 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 65/174 (37%), Gaps = 21/174 (12%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 ID+ Q A +A V+A AGSGKT +L R + L+ N +L LT Sbjct: 7 NMIDICKDLNEHQKQAVKINENAVVAAGAGSGKTKVLASRYVYLITEKNYQVENILALTF 66 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM R+ + +D+ + R+ L++ Sbjct: 67 TDKAAAEMHRRIYRELQKMYTETDDAM-------------------QRNRAGAALDSFFK 107 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 ++ TI AFC I I+ F I D +SK+L DN Sbjct: 108 AQIMTIDAFCHKIAVTACRRFGISPDFTI-DLTESKRLAYNLSLDFFLEHRADN 160 >gi|229015685|ref|ZP_04172668.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1273] gi|228745602|gb|EEL95621.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1273] Length = 751 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 56/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + T D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSTTDRLLNGLNPEQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|197120525|ref|YP_002132476.1| UvrD/REP helicase [Anaeromyxobacter sp. K] gi|196170374|gb|ACG71347.1| UvrD/REP helicase [Anaeromyxobacter sp. K] Length = 797 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 44/176 (25%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL+ Q A V A AGSGKT ++V R+ RL+ P +L +T T Sbjct: 11 DLLQDLNDAQREAVLHDDGPLLVLAGAGSGKTRVIVHRIARLVRDRGVVPWHVLAVTFTN 70 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + L Sbjct: 71 KAAGEMRERLERLLGPLAR--------------------------------------ELW 92 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 VQT HAF +++ A ++ FAI D++ +L K L+ + LD E L Sbjct: 93 VQTFHAFGARFLRREAARAGLSPSFAIYDDDDQLRL----VKGLLSELGLDEGEGL 144 >gi|300214971|gb|ADJ79387.1| ATP-dependent DNA helicase [Lactobacillus salivarius CECT 5713] Length = 744 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 74/193 (38%), Gaps = 45/193 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 + ++ +SE +L ++ + A AGSGKT +L RV L+ +P +L +T T Sbjct: 7 LSGMNDKQSEAVLCTE--GPLLIMAGAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + + Sbjct: 65 KAAREMRERVNNLMGEGAE--------------------------------------DIW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T HA C I+++ + F IA + + L+++ L + +D + +A Sbjct: 87 VSTFHALCVRILRRDAEKIGFNRSFTIASTSEQRTLMKQ----VLNDLNIDTKKYDPRAI 142 Query: 193 YEILEISNDEDIE 205 ++ + ++ ++ Sbjct: 143 LSVISNAKNDLLD 155 >gi|291295604|ref|YP_003507002.1| UvrD/REP helicase [Meiothermus ruber DSM 1279] gi|290470563|gb|ADD27982.1| UvrD/REP helicase [Meiothermus ruber DSM 1279] Length = 706 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 61/168 (36%), Gaps = 41/168 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 S+ + ++ S+Q A V A AGSGKT +V R+ LL +P+ +L + Sbjct: 1 MSDLLSSLN--PSQQEAVLHFEGPALVVAGAGSGKTRTVVHRIAYLLRERRVYPAEILAV 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R+ +++ + Sbjct: 59 TFTNKAAGEMKERLEKMVGRPAR------------------------------------- 81 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L V T HA I++ + + F I DE+ L++E K Sbjct: 82 -DLWVSTFHAAAVRILRTYGEYVGLRPGFVIYDEDDQNTLLKEVLKEL 128 >gi|219848809|ref|YP_002463242.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485] gi|219543068|gb|ACL24806.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485] Length = 742 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 67/191 (35%), Gaps = 42/191 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L + +Q + T V A GSGKT +L R+ L+ P +L +T T A Sbjct: 7 LANLNPQQQRAVTTVTGPVLVLAGPGSGKTRVLTHRIAYLIDEVGVDPLQILAVTFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R++ ++ L V Sbjct: 67 AREMRERLMALLGEAIAHD-------------------------------------LTVG 89 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C +++ + F I D + ++L+ K L + L+ + L +A Sbjct: 90 TFHSICARWLRRDIVHLGRERDFVIYDTDDQERLL----KRVLRELNLNEKQHLPRAILS 145 Query: 195 ILEISNDEDIE 205 + + +E ++ Sbjct: 146 AISHAKNELVD 156 >gi|304392202|ref|ZP_07374144.1| ATP-dependent helicase PcrA [Ahrensia sp. R2A130] gi|303296431|gb|EFL90789.1| ATP-dependent helicase PcrA [Ahrensia sp. R2A130] Length = 860 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 69/193 (35%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ ++ V A AG+GKT +L R+ +L A PS +L +T T Sbjct: 34 YLDGLN--PEQRDAVLTTEGPLLVLAGAGTGKTRVLTTRITHILQQRMAWPSQILAVTFT 91 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM HR+ + G Sbjct: 92 NKAAREMKHRIAAQVGEAVE-------------------------------------GMP 114 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C I+++ + S F I D + +L+++ + + +D+ K Sbjct: 115 WLGTFHSICVKILRRHAELVQLKSGFTILDTDDQVRLMKQ----LIQAENIDDKRWPAKQ 170 Query: 192 FYEILEISNDEDI 204 +++ ++ + Sbjct: 171 LAGLIDGWKNKAL 183 >gi|260428560|ref|ZP_05782539.1| DNA helicase II [Citreicella sp. SE45] gi|260423052|gb|EEX16303.1| DNA helicase II [Citreicella sp. SE45] Length = 815 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 73/193 (37%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ + E + D + A AG+GKT L R++ LL++ A P+ +L +T T Sbjct: 27 YLDDLNPAQREAVERLD--GPVLMLAGAGTGKTKALTSRIVHLLVSGKARPNEILSVTFT 84 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ + G Sbjct: 85 NKAAREMKERVGRLLGQ-------------------------------------QIEGMP 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C ++++ + S+F I D + +L+++ +A+ +D + Sbjct: 108 WLGTFHSICVKLLRRHAELVGLKSNFTILDTDDQIRLLKQ----LIAANNIDEKRWPARQ 163 Query: 192 FYEILEISNDEDI 204 +++ + Sbjct: 164 LSGLIDHWKNRAW 176 >gi|288801211|ref|ZP_06406666.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 299 str. F0039] gi|288331822|gb|EFC70305.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 299 str. F0039] Length = 803 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 38/164 (23%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ++L+++ +Q A + + V A AGSGKT +L ++ L+ P ++L LT T Sbjct: 1 MNLLNELNEKQREAVEYISGPQLVIAGAGSGKTRVLTYKIAYLIEKGFMPWSILALTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ ++ L+ Sbjct: 61 KAANEMKERIATLVGE-------------------------------------QSARQLQ 83 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ +F I DE S+ LI+ K Sbjct: 84 MGTFHSVFSRILRNEAATIGYQRNFTIYDESDSRSLIKTIVKEL 127 >gi|260463377|ref|ZP_05811578.1| UvrD/REP helicase [Mesorhizobium opportunistum WSM2075] gi|259030967|gb|EEW32242.1| UvrD/REP helicase [Mesorhizobium opportunistum WSM2075] Length = 697 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 31/168 (18%) Query: 11 SETIDLISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 ++ ++ + + + D V A AGSGKT+ L RV L++ A P +L + Sbjct: 17 PAYLERLNDAQRQAVEHGDGKIAGPLLVIAGAGSGKTNTLAHRVAHLIVKGADPRRILLM 76 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T ++ AA+EM+ RV I +++ +T Sbjct: 77 TFSRRAASEMARRVERIAGEVLGRDAAVITDALT-------------------------- 110 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++ + LE + F I D E S L+ + Sbjct: 111 ---WAGTFHGIGARLLRDYALEIGLDPAFTIHDREDSADLMNLVRHEL 155 >gi|217969625|ref|YP_002354859.1| UvrD/REP helicase [Thauera sp. MZ1T] gi|217506952|gb|ACK53963.1| UvrD/REP helicase [Thauera sp. MZ1T] Length = 744 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 80/224 (35%), Gaps = 46/224 (20%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L+S EQL A P + A + A AGSGKT +L R+ L+ + P+ +L +T T Sbjct: 4 LLSNLNPEQLQAVSLPAQHALILAGAGSGKTRVLTTRIAWLIQSGQVDPAGILAVTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ + G+ + Sbjct: 64 AAKEMLARLGAMLPVSTR--------------------------------------GMWI 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H +++ +A + F I D A K L ++ +D+ + + Sbjct: 86 GTFHGLANRLLRAHHRDAGLPQLFQILDSADQLA----AIKRLLKTLNVDDEKFPPRELQ 141 Query: 194 EILEISNDEDIETLISDIISNRTALK--LIFFFFSYLWRRKIIE 235 + + + + + T L+ L + + R +++ Sbjct: 142 HFINGQKEAGNRPHVVEAWDDYTRLRVQLYQEYEAQCQRESVVD 185 >gi|149278325|ref|ZP_01884463.1| UvrD/REP helicase domain protein [Pedobacter sp. BAL39] gi|149231091|gb|EDM36472.1| UvrD/REP helicase domain protein [Pedobacter sp. BAL39] Length = 1080 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 10/171 (5%) Query: 35 WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L L +LL+ +L +T T A EM R++E++ ++ + Sbjct: 9 ILQASAGSGKTFSLTAHYLTILLSGETKYREILAVTFTNKATEEMKTRIMEVLRGFATAA 68 Query: 94 DEILSAEITKIQGKK--PNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 +E+ + ++G + K+ + IL V TI F + +++ F E Sbjct: 69 EEVEDYRLLVLKGHPDLDRQELQEKSARIYKRILHDYSRFSVSTIDGFVQKVIRGFAFEL 128 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 + S +A+ K+ LA + + + I++++ D Sbjct: 129 GLDSGYALEMNFDK-------VKNELADRLDEQMDNNPALLQWIIDLALDR 172 >gi|146280569|ref|YP_001170722.1| DNA-dependent helicase II [Pseudomonas stutzeri A1501] gi|145568774|gb|ABP77880.1| DNA helicase II [Pseudomonas stutzeri A1501] Length = 729 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 67/185 (36%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSH 80 +++ + P V A AGSGKT +LV R+ L + A ++L +T T AAAEM Sbjct: 15 AQRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLHQVERASLHSILSVTFTNKAAAEMRQ 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ P G+ V T H Sbjct: 75 RIEQLLHV--------------------------------------NPQGMWVGTFHGLA 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + +F I D + ++L K + + LD + + Sbjct: 97 HRLLRAHWREAKLAENFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWWINAQK 152 Query: 201 DEDIE 205 DE + Sbjct: 153 DEGLR 157 >gi|294677028|ref|YP_003577643.1| DNA helicase II [Rhodobacter capsulatus SB 1003] gi|294475848|gb|ADE85236.1| DNA helicase II [Rhodobacter capsulatus SB 1003] Length = 852 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 70/195 (35%), Gaps = 44/195 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 + +D ++ + + A D + A AG+GKT L R+ L+ + A P+ +L +T Sbjct: 29 TPWLDGLNDAQRRAVEALD--GPVLMLAGAGTGKTKALTARIAHLIHSGRARPNEVLAVT 86 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ ++ G Sbjct: 87 FTNKAAREMKDRIGRLMGQTLE-------------------------------------G 109 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + T H+ C ++++ + S+F I D + +L+++ + + +D Sbjct: 110 MPWLGTFHSVCVKLLRRHAELVGLRSNFTILDTDDQIRLLKQ----LILAANMDEKRWPA 165 Query: 190 KAFYEILEISNDEDI 204 + +++ + Sbjct: 166 RQLAGLIDSWKNRAW 180 >gi|297571848|ref|YP_003697622.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595] gi|296932195|gb|ADH93003.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595] Length = 836 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 58/171 (33%), Gaps = 40/171 (23%) Query: 7 FQEHSETIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 F ++ +L +Q V A AGSGKT +L R+ L+ A A P Sbjct: 43 FAHNARIRELTEGLNPQQHQAVVHTGGHLLVVAGAGSGKTRVLTTRIAYLIAAGKARPGE 102 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 103 ILAITFTNKAAKEMRERLEGLLGDVAR--------------------------------- 129 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I++ + S F I D S +L++ + Sbjct: 130 -----RMWISTFHSACVRILRTEHKALGMRSSFTIYDAADSARLMKIVAQE 175 >gi|209525368|ref|ZP_03273909.1| ATP-dependent DNA helicase PcrA [Arthrospira maxima CS-328] gi|209494219|gb|EDZ94533.1| ATP-dependent DNA helicase PcrA [Arthrospira maxima CS-328] Length = 779 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 82/198 (41%), Gaps = 19/198 (9%) Query: 11 SETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 E++D ++ S Q A + V A AGSGKT L RV L+ + +P +L + Sbjct: 1 MESVDFLTSLNSSQRQAVEHFCGPMLVVAGAGSGKTRALTYRVANLIDNHKVNPENILAV 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA E+ +R+ I + +P +++ + + + Sbjct: 61 TFTNKAAREIKNRIESIFAQQQAQKQYQKP-----LSALEPATQTQLRSQ-IYRKLTKH- 113 Query: 129 GGLKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIML 182 L + T H+ C I++ ++ E +F+I DE + L+++ TL + Sbjct: 114 --LWMGTFHSLCARILRYDINKYQDEKGRQWKPNFSIFDESDALALVKQIVTKTLN--LD 169 Query: 183 DNNEELKKAFYEILEISN 200 D + +K Y+I N Sbjct: 170 DKKFDPRKTRYKISNAKN 187 >gi|262201311|ref|YP_003272519.1| ATP-dependent DNA helicase PcrA [Gordonia bronchialis DSM 43247] gi|262084658|gb|ACY20626.1| ATP-dependent DNA helicase PcrA [Gordonia bronchialis DSM 43247] Length = 828 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 42/168 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 + +D ++ ++ + A AGSGKT +L +R+ LL A + P +L +T Sbjct: 23 TRLLDGLN--PQQRAAVLHTGAPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQVLAIT 80 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM RV++++ + Sbjct: 81 FTNKAAAEMRERVIDLVGPRATY------------------------------------- 103 Query: 130 GLKVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I++ Q L A + S+F+I D + SK+L+ + Sbjct: 104 -MWVSTFHSTCVRILRAQSGLLAGMNSNFSIYDADDSKRLLGMIIRDL 150 >gi|313898067|ref|ZP_07831606.1| ATP-dependent DNA helicase PcrA [Clostridium sp. HGF2] gi|312957095|gb|EFR38724.1| ATP-dependent DNA helicase PcrA [Clostridium sp. HGF2] Length = 763 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 65/164 (39%), Gaps = 41/164 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +D +++ + E + D + A AGSGKT ++ R+ L+ +P+ +L +T T Sbjct: 4 LDQLNEHQLEAVQCVD--HHLRIIAGAGSGKTRVVTTRIAYLINDCGVYPNKVLAITFTN 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + + Sbjct: 62 KAAREMKERVENLLGDVAK--------------------------------------AVT 83 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + TIH+FC ++++ LE +F I D + K ++ +A K Sbjct: 84 ISTIHSFCVRLLREDILELGYPRNFTILDADDQKSILRDAYKQM 127 >gi|289446520|ref|ZP_06436264.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis CPHL_A] gi|289419478|gb|EFD16679.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis CPHL_A] Length = 702 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 44/232 (18%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 + +D ++ + + ++ + A AGSGKT +L +R+ L+ A +L +T Sbjct: 18 QLLDGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV+ ++ KAR+ Sbjct: 76 TNKAAAEMRERVVGLVG---------------------------EKARY----------- 97 Query: 131 LKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + V T H+ C I++ + S+F+I D + S++L++ + I + L Sbjct: 98 MWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLA 157 Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 A + D ++ + + L ++R++ + Sbjct: 158 NAISNLKNELIDP--HQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDF 207 >gi|206603905|gb|EDZ40385.1| Putative exodeoxyribonuclease V, beta subunit [Leptospirillum sp. Group II '5-way CG'] Length = 1095 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 73/166 (43%), Gaps = 7/166 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII---TAWSHL 92 + A+AG+GKT L L ++L+ P +L +T T+AAA ++ R+ +++ W Sbjct: 21 IEASAGTGKTTTLALLYLSVILSGVSPENILVVTFTRAAAQDVRERIQKLLEDVRQWRSG 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 S + ++ + R L L +QTIH+FC+++++Q Sbjct: 81 SKAEILPDLRAYLETLETDPLLLDMR--LREALVVFDRAPIQTIHSFCQSLLRQMSFLLG 138 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 ++ + E+Q ++ E+ S+ + L + F + E Sbjct: 139 APANLVLVPEDQ--PVLYESSVRLWRSLFYGRDSRLAEFFLSVWED 182 >gi|87309221|ref|ZP_01091358.1| ATP-dependent DNA helicase [Blastopirellula marina DSM 3645] gi|87288212|gb|EAQ80109.1| ATP-dependent DNA helicase [Blastopirellula marina DSM 3645] Length = 759 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 61/181 (33%), Gaps = 41/181 (22%) Query: 13 TIDLI-SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 T DL+ S T ++ V A GSGKT ++ R+ LL P+ + LT T Sbjct: 2 TADLLQSLTDPQREAVLHVDGPLLVLAGPGSGKTRVITHRIAHLLSQGVRPTQIAALTFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ L + Sbjct: 62 NKAADEMRSRLDR----------------------------------------LAPGENV 81 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H FC +++Q+ + ++ I D S L++ + T + E++ A Sbjct: 82 WIGTFHRFCARLLRQYAEYRGLQPNYTIYDTSDSLSLLKRTIRETDVQLTHATPEQVASA 141 Query: 192 F 192 Sbjct: 142 I 142 >gi|69246832|ref|ZP_00604141.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium DO] gi|68195065|gb|EAN09527.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium DO] Length = 744 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 +E ++ ++ + E +L +D + A AGSGKT +L R+ L+ +P +L +T Sbjct: 5 AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV I+ + Sbjct: 63 FTNKAAKEMKERVNAILASGGE-------------------------------------- 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ +F I D + L++ K Sbjct: 85 DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 131 >gi|302877434|ref|YP_003845998.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2] gi|302580223|gb|ADL54234.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2] Length = 723 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 79/224 (35%), Gaps = 46/224 (20%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 L+S QL A P +SA + A AGSGKT +L R+ L+ A P +L +T T Sbjct: 15 LLSGLNPPQLQAVTLPRQSALILAGAGSGKTRVLTTRIAYLISTGAVSPHGILAVTFTNK 74 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ G+ + Sbjct: 75 AAKEMVTRLSAMLPI--------------------------------------NTRGMWI 96 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ EA + F I D A K + ++ +D+ + + Sbjct: 97 GTFHGLCNRLLRAHYREAALPQTFQILDSGDQLS----AIKRIMKALEIDDEKYPPREMQ 152 Query: 194 EILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + S ++ + + R + + + + R +++ Sbjct: 153 NFISGSKEQGLRAHDVEAFDPYTRRKVDVYAEYDAQCQREGVVD 196 >gi|241763721|ref|ZP_04761769.1| UvrD/REP helicase [Acidovorax delafieldii 2AN] gi|241367026|gb|EER61411.1| UvrD/REP helicase [Acidovorax delafieldii 2AN] Length = 821 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 72/221 (32%), Gaps = 46/221 (20%) Query: 19 QTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76 EQL A P A + A AGSGKT +L R+ LL A P +L +T T AA Sbjct: 31 NLNDEQLAAVTLPAGHALILAGAGSGKTRVLTTRIAWLLQNGYATPGGILAVTFTNKAAK 90 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ ++ G+ + T Sbjct: 91 EMVARLSAMLPV--------------------------------------NVRGMWIGTF 112 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H C +++ A + F I D + A K +D+ K + Sbjct: 113 HGLCNRLLRAHHKAAGLPQAFQILDTQDQLS----AIKRLCKQHNVDDERFPPKQLAYFI 168 Query: 197 EISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIE 235 +E + + + +R +++ + R +++ Sbjct: 169 ANCKEEGMRPGDVPTHDSDSRKKVEIYQLYEEQCQREGVVD 209 >gi|159902871|ref|YP_001550215.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9211] gi|159888047|gb|ABX08261.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9211] Length = 809 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 88/222 (39%), Gaps = 27/222 (12%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66 Q+ + +D ++ + + V A AGSGKT L R+ L+ PS +L Sbjct: 3 QQSNSFLDGLN--NEQSNAVNHFEGPLLVVAGAGSGKTRALTHRIAHLITEYKVDPSEIL 60 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL- 125 +T T AA EM R+ + +L+ I K Q +P S ++ T + Sbjct: 61 AVTFTNKAAREMKERL-----------ELLLAKRIAKYQLDQPWSSVSLVEQNQFRTRIY 109 Query: 126 -ETPGGLKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178 E L + T HA +++ +F + + T +F+I DE ++ LI+E + Sbjct: 110 REVTKDLWIGTFHALFSKLLRFDIEKFVDKEGLKWTKYFSIYDETDAQSLIKEI---IIQ 166 Query: 179 SIMLDNNEELKKAFYEILEISNDEDI--ETLISDIISNRTAL 218 + LD K + + ++ I + R L Sbjct: 167 DMNLDPKRFEPKKVRWAISNAKNQGILPDQFTQSAEGQRGKL 208 >gi|119510681|ref|ZP_01629809.1| DNA helicase II [Nodularia spumigena CCY9414] gi|119464635|gb|EAW45544.1| DNA helicase II [Nodularia spumigena CCY9414] Length = 774 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 77/200 (38%), Gaps = 20/200 (10%) Query: 13 TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 TID +S Q A + V A AGSGKT L R+ L+L +P +L +T Sbjct: 4 TIDFLSHLNPSQRQAVEHYCGPLLVVAGAGSGKTRALTYRIANLILKHGVYPEHILAVTF 63 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ + + ++ + +S + K T Sbjct: 64 TNKAAREMKERIQRLFGEDLAMKKHGQKFDLLTEYQQMQLRSQVYK---------NTIKD 114 Query: 131 LKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 L T H+ I++ ++ E T +F+I DE L++E + LD+ Sbjct: 115 LWCGTFHSLFSKILRFDIDKYQDEKGRRWTRNFSIFDESDVISLMKEIVN---KQLNLDD 171 Query: 185 NEELKKAFYEILEISNDEDI 204 + ++ + + ++ Sbjct: 172 KKFDARSVRYAISNAKNQGF 191 >gi|114570609|ref|YP_757289.1| ATP-dependent DNA helicase Rep [Maricaulis maris MCS10] gi|114341071|gb|ABI66351.1| ATP-dependent DNA helicase, Rep family [Maricaulis maris MCS10] Length = 763 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 75/221 (33%), Gaps = 47/221 (21%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 + +D ++ + + A D V A AG+GKT +L R+ +L A P +L +T Sbjct: 16 TPYLDGLNAEQRAAVEAMD--GPVLVLAGAGTGKTRVLTTRLAHILATGRARPWEILAVT 73 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV +II Sbjct: 74 FTNKAAREMKERVGKIIGEAVEGVP----------------------------------- 98 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + T H+ I+++ ++ S F I D + +L+++ + + +D Sbjct: 99 --WLGTFHSVSAQILRRHAELVDLKSSFTILDTDDQLRLMKQ----IIQAENIDEKRWTP 152 Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWR 230 + +++ + L+ D + L+R Sbjct: 153 RHLASLIDGWKNRG---LMPDQLGEDDKWAFAEGRGQDLYR 190 >gi|90962321|ref|YP_536237.1| ATP-dependent DNA helicase [Lactobacillus salivarius UCC118] gi|90821515|gb|ABE00154.1| ATP-dependent DNA helicase [Lactobacillus salivarius UCC118] Length = 744 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 74/193 (38%), Gaps = 45/193 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 + ++ +SE +L ++ + A AGSGKT +L RV L+ +P +L +T T Sbjct: 7 LSGMNDKQSEAVLCTE--GPLLIMAGAGSGKTRVLTHRVAYLIEEKGVNPWNILAITFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + + Sbjct: 65 KAAREMRERVNNLMGEGAE--------------------------------------DIW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T HA C I+++ + F IA + + L+++ L + +D + +A Sbjct: 87 VSTFHALCVRILRRDAEKIGFNRSFTIASTSEQRTLMKQ----VLNDLNIDTKKYDPRAI 142 Query: 193 YEILEISNDEDIE 205 ++ + ++ ++ Sbjct: 143 LSVISNAKNDLLD 155 >gi|70726047|ref|YP_252961.1| ATP-depentend DNA helicase [Staphylococcus haemolyticus JCSC1435] gi|68446771|dbj|BAE04355.1| ATP-depentend DNA helicase [Staphylococcus haemolyticus JCSC1435] Length = 731 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 39/159 (24%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76 + K + + A AGSGKT +L R+ LL + P +L +T T AA Sbjct: 7 NMNKEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV +++ + + + + T Sbjct: 67 EMKERVEQLVGEEAQV--------------------------------------IWMSTF 88 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 H+ C I+++ I +F I D K +I++ K+ Sbjct: 89 HSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127 >gi|145219316|ref|YP_001130025.1| ATP-dependent DNA helicase PcrA [Prosthecochloris vibrioformis DSM 265] gi|145205480|gb|ABP36523.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeovibrioides DSM 265] Length = 728 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 39/164 (23%) Query: 15 DLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 DL+ + ++ AS V A AGSGKT ++ R+ L+ +L LT T Sbjct: 3 DLLQDLSAVQRDAASATEGPVMVLAGAGSGKTRVITYRIANLIGNQGVPAGNILALTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM HRV +++ S GGL Sbjct: 63 KAAGEMRHRVDQLLGPGSS-------------------------------------GGLW 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ +++++ + F+I D + SK LI + Sbjct: 86 IGTFHSVFARLLREYIDRLGYSRSFSIFDSDDSKSLIRQCMAEL 129 >gi|87123150|ref|ZP_01079001.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. RS9917] gi|86168870|gb|EAQ70126.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. RS9917] Length = 796 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 68/174 (39%), Gaps = 19/174 (10%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + ++ Q A D V A AGSGKT L R+ L+ A P+ +L +T T Sbjct: 1 MSFLAGLNDAQRRAVDHHEGPLLVVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL-ETPGG 130 AA EM R+ ++ S G+ + + R L I E Sbjct: 61 NKAAREMKERLELLLAQRLAQSQ----------FGQPWSTLPPVEQRQLRSRIYREVTKD 110 Query: 131 LKVQTIHAFCEAIMQ----QFPLEANIT--SHFAIADEEQSKKLIEEAKKSTLA 178 L + T HA +++ +F ++ F+I DE ++ L++E L Sbjct: 111 LWIGTFHALFARMLRFDIDKFKDAEGLSWTKQFSIYDETDAQSLVKEIVTQELQ 164 >gi|327314684|ref|YP_004330121.1| putative ATP-dependent helicase PcrA [Prevotella denticola F0289] gi|326946329|gb|AEA22214.1| putative ATP-dependent helicase PcrA [Prevotella denticola F0289] Length = 842 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 69/188 (36%), Gaps = 42/188 (22%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 D++S Q A + T + V A AGSGKT +L ++ LL P +L LT T Sbjct: 9 DILSALNESQRAAVEYCTGPSLVIAGAGSGKTRVLTYKIAYLLNKGLSPWNILALTFTNK 68 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ I TA + Sbjct: 69 AAREMKERIARITTAGE-------------------------------------AQRFYM 91 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ I+++ + +F I DE S+ LI KS + ++ LD + + Sbjct: 92 GTFHSIFSRILRREGQAVGFSGNFTIYDESDSRSLI----KSIVKALGLDEKAYKPSSVH 147 Query: 194 EILEISND 201 + ++ + Sbjct: 148 SFISMAKN 155 >gi|312135101|ref|YP_004002439.1| uvrd/rep helicase [Caldicellulosiruptor owensensis OL] gi|311775152|gb|ADQ04639.1| UvrD/REP helicase [Caldicellulosiruptor owensensis OL] Length = 714 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 39/165 (23%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ + + +Q A V A AGSGKT ++ R+ +L A P +L +T T Sbjct: 1 MEWLKELNEQQKEAVLSTEGPLLVLAGAGSGKTRVITYRIAYILSMGLADPDNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++++ ++ + Sbjct: 61 NKAADEMKERIKKLVST-------------------------------------KSFAEM 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HA C I++ +++F I D + +++ E Sbjct: 84 WVSTFHAACARILRMEAHNIGFSNNFVIFDTQDRNQILRECFNKL 128 >gi|229009788|ref|ZP_04167008.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides DSM 2048] gi|228751406|gb|EEM01212.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides DSM 2048] Length = 743 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 57/165 (34%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 + ++ ++ +Q + A AGSGKT +L R+ LL P +L +T Sbjct: 6 KLLNGLN--PQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITF 63 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ +++ + Sbjct: 64 TNKAAREMRERIDKLVGPEAE--------------------------------------D 85 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 86 IWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130 >gi|227509969|ref|ZP_03940018.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190575|gb|EEI70642.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 743 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 73/212 (34%), Gaps = 56/212 (26%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 K ++ + A AGSGKT +L R+ ++ N P +L +T T AA EM Sbjct: 11 NKDQKDAVIHTEGPVLIMAGAGSGKTRVLTHRIAYIIEHNHVMPWNILAITFTNKAAREM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ E+ + V T HA Sbjct: 71 RERVSKLLD--------------------------------------ESGDDVWVSTFHA 92 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILE 197 C I+++ + F IAD + + L K L + +D + + + I Sbjct: 93 LCVRILRRNIDQLGFNRAFTIADTSEQRTL----VKRVLRELNIDPKKFDPRAVLSSISN 148 Query: 198 ISN------------DEDIETLISDIISNRTA 217 N D D + +++D+ + A Sbjct: 149 AKNDLLTPKAFKAQADNDFDQIVADVYARYQA 180 >gi|171743075|ref|ZP_02918882.1| hypothetical protein BIFDEN_02201 [Bifidobacterium dentium ATCC 27678] gi|283455915|ref|YP_003360479.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1] gi|171278689|gb|EDT46350.1| hypothetical protein BIFDEN_02201 [Bifidobacterium dentium ATCC 27678] gi|283102549|gb|ADB09655.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1] Length = 885 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 39/156 (25%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 LI +Q A ++ + A AGSGKT +L +R+ LL S +L +T T A Sbjct: 23 LIKDLNPQQSEAVKYYGQALLIGAGAGSGKTRVLTRRIAWLLAHGIWASQILAITFTNKA 82 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM R+ I+ + + + Sbjct: 83 AAEMRERLAAIVGPEAE--------------------------------------RMWIS 104 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H+ C I+++ + + S F+I D S++LI+ Sbjct: 105 TFHSACVRILRRDGDQIGLKSGFSIYDTADSERLIK 140 >gi|309801365|ref|ZP_07695494.1| putative ATP-dependent DNA helicase PcrA [Bifidobacterium dentium JCVIHMP022] gi|308222254|gb|EFO78537.1| putative ATP-dependent DNA helicase PcrA [Bifidobacterium dentium JCVIHMP022] Length = 794 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 39/156 (25%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 LI +Q A ++ + A AGSGKT +L +R+ LL S +L +T T A Sbjct: 15 LIKDLNPQQSEAVKYYGQALLIGAGAGSGKTRVLTRRIAWLLAHGIWASQILAITFTNKA 74 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM R+ ++ + + + Sbjct: 75 AAEMRERLAALVGPEAE--------------------------------------RMWIS 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H+ C I+++ + + S F+I D S++LI+ Sbjct: 97 TFHSACVRILRRDGDQIGLKSGFSIYDTADSERLIK 132 >gi|293560000|ref|ZP_06676508.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1162] gi|291606088|gb|EFF35514.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1162] Length = 744 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 +E ++ ++ + E +L +D + A AGSGKT +L R+ L+ +P +L +T Sbjct: 5 AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV I+ + Sbjct: 63 FTNKAAKEMKERVNAILASGGE-------------------------------------- 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ +F I D + L++ K Sbjct: 85 DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 131 >gi|259047692|ref|ZP_05738093.1| ATP-dependent DNA helicase PcrA [Granulicatella adiacens ATCC 49175] gi|259035883|gb|EEW37138.1| ATP-dependent DNA helicase PcrA [Granulicatella adiacens ATCC 49175] Length = 773 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 73/203 (35%), Gaps = 47/203 (23%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 + +E I ++ + E ++ V A AGSGKT +L R+ +L P +L Sbjct: 2 KNSNELIKGMNPRQKEAVM--HTQGPLLVMAGAGSGKTRVLTHRMAYILAEEEVQPWNIL 59 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA+EM RV ++ E Sbjct: 60 AITFTNKAASEMKERVSALVG--------------------------------------E 81 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + V T H+ C I+++ + F I D A K + + +D+++ Sbjct: 82 QAGDMWVSTFHSMCVRILRRDCERIGLAKSFTIIDSGDQLS----AMKRIMQKLNIDSDK 137 Query: 187 -ELKKAFYEILEISND-EDIETL 207 + + I N+ ED ET Sbjct: 138 FDARGILASISNAKNNFEDAETF 160 >gi|67924839|ref|ZP_00518236.1| ATP-dependent DNA helicase PcrA [Crocosphaera watsonii WH 8501] gi|67853326|gb|EAM48688.1| ATP-dependent DNA helicase PcrA [Crocosphaera watsonii WH 8501] Length = 772 Score = 128 bits (322), Expect = 7e-28, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 92/242 (38%), Gaps = 32/242 (13%) Query: 10 HSETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 + +++ +SQ Q +A + V A AGSGKT L R+ L+ P ++L Sbjct: 1 MTASVNFLSQLNPSQRIAVEHFCGPLLVVAGAGSGKTRALTYRIAHLITHYQVDPESILA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL-E 126 +T T AA EM R+ + L K QG+ N + LL + + Sbjct: 61 VTFTNKAAREMKDRLERLFAQEMAL----------KQQGQPFNSLPEYDQKRLLSQVYKK 110 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITS---------HFAIADEEQSKKLIEEAKKSTL 177 T L + T H+ C I++ + N +F+I DE + L++ L Sbjct: 111 TTKKLWIGTFHSLCARILR---YDVNKYQDEKKRQWERNFSIFDESDVQSLVKNI---VL 164 Query: 178 ASIMLDNNEELKKAFYEILEISNDEDI--ETLISD--IISNRTALKLIFFFFSYLWRRKI 233 LD+ + + + + + + E + + R ++ + + L Sbjct: 165 KQFNLDDKKFNPRTVRYAISNAKNLGLSPEAYLKENSYAKGRVIAEVYNEYQTQLAANNA 224 Query: 234 IE 235 ++ Sbjct: 225 LD 226 >gi|220915236|ref|YP_002490540.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953090|gb|ACL63474.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1] Length = 797 Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 44/176 (25%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL+ Q A V A AGSGKT ++V R+ RL+ P +L +T T Sbjct: 11 DLLQDLNDAQREAVLHDDGPLLVLAGAGSGKTRVIVHRIARLVRDRGVVPWHVLAVTFTN 70 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + L Sbjct: 71 KAAGEMRERLERLLGPLAR--------------------------------------ELW 92 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 VQT HAF +++ A ++ FAI D++ +L K L+ + LD E L Sbjct: 93 VQTFHAFGARFLRREAARAGLSPSFAIYDDDDQLRL----VKGLLSELGLDEGEGL 144 >gi|261367235|ref|ZP_05980118.1| ATP-dependent deoxyribonuclease subunit A [Subdoligranulum variabile DSM 15176] gi|282570836|gb|EFB76371.1| ATP-dependent deoxyribonuclease subunit A [Subdoligranulum variabile DSM 15176] Length = 1160 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 83/224 (37%), Gaps = 36/224 (16%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKA 73 I T ++ S VSA AGSGKT +LV+RV+ ++ HP +LL +T T A Sbjct: 7 IQFTPAQAAAIGARGGSLLVSAAAGSGKTRVLVERVVGMITDPQHPVEADSLLIMTFTNA 66 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAA++ + + + ++ ++ + Sbjct: 67 AAAKLRADIATRLADEVRAHPGNVRLRRQQLLLQR----------------------ASI 104 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T+ AFC +QQ ++ F A+E ++ +E L D + +AF Sbjct: 105 GTVDAFCLHFVQQHFAALDVPPDFETAEEADLARIEQEVLADLLEEAYEDPD---FRAFA 161 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 ++ + +D + L+L F S + ++ Sbjct: 162 DLYDRGR--------TDQTAGNAVLELYHFSRSLPHPMQALQSF 197 >gi|33592827|ref|NP_880471.1| DNA helicase II [Bordetella pertussis Tohama I] gi|33601161|ref|NP_888721.1| DNA helicase II [Bordetella bronchiseptica RB50] gi|33572475|emb|CAE42046.1| DNA helicase II [Bordetella pertussis Tohama I] gi|33575596|emb|CAE32674.1| DNA helicase II [Bordetella bronchiseptica RB50] Length = 766 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 78/224 (34%), Gaps = 46/224 (20%) Query: 16 LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 ++ + EQ A + A V A AGSGKT +L R+ L+ A P LL +T T Sbjct: 2 MLEKLNPEQRAAVTLEPQHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFALLAVTFTNK 61 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ + GL + Sbjct: 62 AAREMLTRMSTLLPIDTR--------------------------------------GLWI 83 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ +A + F I D A K L + +D+ + + Sbjct: 84 GTFHGLCNRMLRAHHRDAGLPQAFQILDTTDQLA----AIKRLLKAGNIDDEKYPPRDVQ 139 Query: 194 EILEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKIIE 235 + + +E + + R +++ + + R +++ Sbjct: 140 RFINGAKEEGLRPGDVEAYDPHRRKLIEIYQLYEAQCQREGVVD 183 >gi|33596606|ref|NP_884249.1| DNA helicase II [Bordetella parapertussis 12822] gi|33573307|emb|CAE37290.1| DNA helicase II [Bordetella parapertussis] Length = 766 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 78/224 (34%), Gaps = 46/224 (20%) Query: 16 LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 ++ + EQ A + A V A AGSGKT +L R+ L+ A P LL +T T Sbjct: 2 MLEKLNPEQRAAVTLEPQHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFALLAVTFTNK 61 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ + GL + Sbjct: 62 AAREMLTRMSTLLPIDTR--------------------------------------GLWI 83 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ +A + F I D A K L + +D+ + + Sbjct: 84 GTFHGLCNRMLRAHHRDAGLPQAFQILDTTDQLA----AIKRLLKAGNIDDEKYPPRDVQ 139 Query: 194 EILEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKIIE 235 + + +E + + R +++ + + R +++ Sbjct: 140 RFINGAKEEGLRPGDVEAYDPHRRKLIEIYQLYEAQCQREGVVD 183 >gi|312870522|ref|ZP_07730641.1| ATP-dependent DNA helicase PcrA [Lactobacillus oris PB013-T2-3] gi|311093984|gb|EFQ52309.1| ATP-dependent DNA helicase PcrA [Lactobacillus oris PB013-T2-3] Length = 762 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++ ++ ++E +L ++ V A AGSGKT +L RV L+ P +L +T T Sbjct: 7 LLEGMNDKQAEAVLTTE--GPLLVMAGAGSGKTRVLTHRVAYLIEEKGVLPWNILAITFT 64 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +++ + + Sbjct: 65 NKAAKEMQERVGKLLGEGAQ--------------------------------------DI 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + F IAD + + L+++ Sbjct: 87 WVSTFHSLCVRILRRDIEKLGYNRAFTIADTSEQRTLMKQVCAEL 131 >gi|218130915|ref|ZP_03459719.1| hypothetical protein BACEGG_02510 [Bacteroides eggerthii DSM 20697] gi|217987259|gb|EEC53590.1| hypothetical protein BACEGG_02510 [Bacteroides eggerthii DSM 20697] Length = 760 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 57/163 (34%), Gaps = 38/163 (23%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 D I + Q A + V A AGSGKT +L ++ LL + P +L LT T Sbjct: 3 DYIQELNEGQRAAVLYNDGPSLVIAGAGSGKTRVLTYKIAYLLENDYQPWNILALTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + + +ARHL + Sbjct: 63 AAREMKERIARQVG--------------------------VERARHL-----------WM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I+ + TS F I D SK L+ K Sbjct: 86 GTFHSIFLRILHAEAAQIGFTSRFTIYDTADSKSLLRSIIKEM 128 >gi|42519596|ref|NP_965526.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii NCC 533] gi|41583885|gb|AAS09492.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii NCC 533] Length = 748 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 62/168 (36%), Gaps = 39/168 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 SE L ++ V A AGSGKT +L +R+ L+ P +L + Sbjct: 1 MSEETILAGLNPQQKKAVQCTEGPLLVVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAI 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA+EM RV +++ + Sbjct: 61 TFTNKAASEMKERVQKLLGPAA-------------------------------------- 82 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T HA C I+++ + +++F+IAD + LI+ +K Sbjct: 83 DSVWMSTFHALCVRILRRDAKKIGYSNNFSIADSAEQLTLIKRIEKDL 130 >gi|313680112|ref|YP_004057851.1| ATP-dependent DNA helicase, rep family [Oceanithermus profundus DSM 14977] gi|313152827|gb|ADR36678.1| ATP-dependent DNA helicase, Rep family [Oceanithermus profundus DSM 14977] Length = 719 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 69/182 (37%), Gaps = 44/182 (24%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL+S +Q A A V A AGSGKT +V RV LL +P+ +L +T T Sbjct: 5 DLLSSLNEQQQAAVQHFLGPALVIAGAGSGKTRTVVHRVAYLLAEREVYPAEVLAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + G L Sbjct: 65 KAAGEMRERLSRMVGRAA--------------------------------------GELW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T H+ I++++ + F + D++ + L++E L S+ L+ +A Sbjct: 87 VSTFHSASLRILRRYGERIGLKPGFVVYDDDDQRVLLKE----VLGSLGLEARPTYVRAV 142 Query: 193 YE 194 + Sbjct: 143 LD 144 >gi|293571853|ref|ZP_06682869.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E980] gi|291608107|gb|EFF37413.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E980] Length = 744 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 +E ++ ++ + E +L +D + A AGSGKT +L R+ L+ +P +L +T Sbjct: 5 AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV I+ + Sbjct: 63 FTNKAAKEMKERVNAILASGGE-------------------------------------- 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ +F I D + L++ K Sbjct: 85 DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 131 >gi|152964726|ref|YP_001360510.1| ATP-dependent DNA helicase PcrA [Kineococcus radiotolerans SRS30216] gi|151359243|gb|ABS02246.1| ATP-dependent DNA helicase PcrA [Kineococcus radiotolerans SRS30216] Length = 773 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 39/192 (20%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L+ ++ + A AGSGKT +L R+ LL A P +L +T T A Sbjct: 34 LVGLNPQQRQAVEHAGSPLLIVAGAGSGKTRVLTHRIAYLLARGRATPGEVLAITFTNKA 93 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV ++ + + V Sbjct: 94 AAEMRERVGALVGDVVGMGARS----------------------------------MWVS 119 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C I+++ + + F+I D S++L+ + + LD + +A Sbjct: 120 TFHSACVRILRREATHLGMRTSFSIYDSADSQRLMAMVGR----ELDLDPKKHAPRAMAA 175 Query: 195 ILEISNDEDIET 206 ++ +E ++ Sbjct: 176 MVSNLKNELVDE 187 >gi|257878463|ref|ZP_05658116.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,230,933] gi|257882882|ref|ZP_05662535.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,502] gi|257889340|ref|ZP_05668993.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,410] gi|257894352|ref|ZP_05674005.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,408] gi|260560050|ref|ZP_05832228.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium C68] gi|314937828|ref|ZP_07845145.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a04] gi|314941626|ref|ZP_07848506.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133C] gi|314948873|ref|ZP_07852242.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0082] gi|314951009|ref|ZP_07854076.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133A] gi|314993010|ref|ZP_07858406.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133B] gi|314996457|ref|ZP_07861500.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a01] gi|257812691|gb|EEV41449.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,230,933] gi|257818540|gb|EEV45868.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,502] gi|257825700|gb|EEV52326.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,410] gi|257830731|gb|EEV57338.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,408] gi|260073885|gb|EEW62209.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium C68] gi|313589439|gb|EFR68284.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a01] gi|313592533|gb|EFR71378.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133B] gi|313596864|gb|EFR75709.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133A] gi|313599517|gb|EFR78360.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133C] gi|313642859|gb|EFS07439.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0133a04] gi|313644663|gb|EFS09243.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX0082] Length = 747 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 +E ++ ++ + E +L +D + A AGSGKT +L R+ L+ +P +L +T Sbjct: 8 AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 65 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV I+ + Sbjct: 66 FTNKAAKEMKERVNAILASGGE-------------------------------------- 87 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ +F I D + L++ K Sbjct: 88 DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 134 >gi|325687712|gb|EGD29733.1| exonuclease RexA [Streptococcus sanguinis SK72] Length = 1224 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++VQR++ +L S L T T AA E+ Sbjct: 29 TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R + K G+ +++ + + L L + T+ AF Sbjct: 89 ER-------------------LEKELGQALKEAESPELKQHLAQQLADLPNADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ ++ + +F I + L E + E + F +++ Sbjct: 130 TQKVLSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDRYY---DSERQALFSCLVKN 186 Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 + D+ R + ++ F S ++ +E++ Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWLEETFL 223 >gi|289565872|ref|ZP_06446313.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium D344SRF] gi|289162332|gb|EFD10191.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium D344SRF] Length = 744 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 +E ++ ++ + E +L +D + A AGSGKT +L R+ L+ +P +L +T Sbjct: 5 AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV I+ + Sbjct: 63 FTNKAAKEMKERVNAILASGGE-------------------------------------- 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ +F I D + L++ K Sbjct: 85 DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 131 >gi|257865963|ref|ZP_05645616.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC30] gi|257872296|ref|ZP_05651949.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC10] gi|257875590|ref|ZP_05655243.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC20] gi|257799897|gb|EEV28949.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC30] gi|257806460|gb|EEV35282.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC10] gi|257809756|gb|EEV38576.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus EC20] Length = 747 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 SE ++ ++ + E ++ + A AGSGKT +L R+ L+ N +P +L +T Sbjct: 5 SELLERMNPRQKEAVM--HTEGPLLLMAGAGSGKTRVLTHRIAYLIEEKNVNPWNILAIT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV +++ + Sbjct: 63 FTNKAAREMKERVSQLLGSGGE-------------------------------------- 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ + +F I D + L++ K Sbjct: 85 DVWVSTFHSMCVRILRRDVDRIGYSKNFTIIDSSEQNTLMKRVLKEL 131 >gi|163857120|ref|YP_001631418.1| DNA helicase II [Bordetella petrii DSM 12804] gi|163260848|emb|CAP43150.1| DNA helicase II [Bordetella petrii] Length = 752 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 79/222 (35%), Gaps = 45/222 (20%) Query: 16 LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 ++ Q EQ A + A V A AGSGKT +L R+ L+ A P LL +T T Sbjct: 1 MLEQLNPEQRAAVTLEPQHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFGLLAVTFTNK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ + GL + Sbjct: 61 AAREMLARMSAMLPIDTR--------------------------------------GLWI 82 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ +A + F I D A K L + +D+ + + Sbjct: 83 GTFHGLCNRMLRAHHRDAGLPQTFQILDTTDQLA----AIKRLLKANGIDDEKYPPRDVQ 138 Query: 194 EILEISNDEDIE-TLISDIISNRTALKLIFFFFSYLWRRKII 234 + + ++ + + S+R L I+ + +R+ + Sbjct: 139 RFINGAKEDGLRPGDVEAHDSHRRRLIEIYQLYEAQCQREGV 180 >gi|163938296|ref|YP_001643180.1| ATP-dependent DNA helicase PcrA [Bacillus weihenstephanensis KBAB4] gi|163860493|gb|ABY41552.1| ATP-dependent DNA helicase PcrA [Bacillus weihenstephanensis KBAB4] Length = 747 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 58/171 (33%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q H T D L +Q + + A AGSGKT +L R+ LL P Sbjct: 2 QAHMSTTDKLLNGLNPQQQKAVQTTNGALLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ +++ + Sbjct: 62 VLAITFTNKAAREMRERIDKLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|296169707|ref|ZP_06851325.1| ATP-dependent helicase PcrA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895704|gb|EFG75400.1| ATP-dependent helicase PcrA [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 777 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 84/213 (39%), Gaps = 53/213 (24%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPS 63 N E + ++ ++ + + ++ + A AGSGKT +L +R+ L+ A Sbjct: 9 NLTSEADQLLEGLNPQQRQAVV--HEGTPLLIVAGAGSGKTAVLTRRIAYLIAARGVGVG 66 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L +T T AAAEM RV+ ++ ++AR Sbjct: 67 QILAITFTNKAAAEMRERVVRLVG---------------------------NRAR----- 94 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKS------- 175 + V T H+ C I++ + S+F+I D + S++L++ + Sbjct: 95 ------AMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMIGRDMGLDIKR 148 Query: 176 ----TLASIMLDNNEELKKAFYEILEISNDEDI 204 LA+ + + EL + ++++D D Sbjct: 149 YSPRLLANAISNLKNELIDPAEAVAKLTDDSDD 181 >gi|289178716|gb|ADC85962.1| PcrA [Bifidobacterium animalis subsp. lactis BB-12] Length = 1037 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 60/164 (36%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +LI +Q A + A AGSGKT +L +R+ +L A PS +L +T T Sbjct: 144 ELIGDLNEQQAQAVQYRGPALLIGAGAGSGKTRVLTRRIAWILTQFGAWPSQVLAITFTN 203 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ +I + + Sbjct: 204 KAAAEMRERLGALIGGVA--------------------------------------DRMW 225 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + + S F I D ++LI+ Sbjct: 226 VSTFHSACVRILRRDGEQIGLKSGFTIYDTADCERLIKLVCADF 269 >gi|288927546|ref|ZP_06421393.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 317 str. F0108] gi|288330380|gb|EFC68964.1| ATP-dependent DNA helicase PcrA [Prevotella sp. oral taxon 317 str. F0108] Length = 823 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 64/165 (38%), Gaps = 39/165 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 +D +++++ E ++ +D V A AGSGKT +L ++ LL P +L LT T Sbjct: 3 NLLDKLNESQREAVVYTD--GPQLVIAGAGSGKTRVLTFKIAYLLQQGLKPWNILALTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ A+HL + Sbjct: 61 NKAANEMKARIGNLVGH--------------------------EGAKHLFM--------- 85 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ +S+F I DE S+ LI+ K Sbjct: 86 --GTFHSIFSRILRVEAPRIGFSSNFTIYDETDSRSLIKTICKEM 128 >gi|84497950|ref|ZP_00996747.1| putative ATP-dependent DNA helicase II [Janibacter sp. HTCC2649] gi|84381450|gb|EAP97333.1| putative ATP-dependent DNA helicase II [Janibacter sp. HTCC2649] Length = 838 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 41/171 (23%) Query: 7 FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTL 65 Q+ ++ +++ + E ++ + + A AGSGKT +L R+ LL A P + Sbjct: 75 AQDPEALLEGLNEEQREAVIHA--GGPLLIIAGAGSGKTRVLTHRIGYLLAARGVQPGQI 132 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T AAAEM RV +++ +AR Sbjct: 133 LAITFTNKAAAEMRERVQDLVG---------------------------PRAR------- 158 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ + + S F+I D S++L+ + Sbjct: 159 ----AMWVMTFHSACVRILRREADKVGMKSTFSIYDAADSQRLMSMVIRDM 205 >gi|257884411|ref|ZP_05664064.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,501] gi|257887195|ref|ZP_05666848.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,141,733] gi|257820249|gb|EEV47397.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,231,501] gi|257823249|gb|EEV50181.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium 1,141,733] Length = 747 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 +E ++ ++ + E +L +D + A AGSGKT +L R+ L+ +P +L +T Sbjct: 8 AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 65 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV I+ + Sbjct: 66 FTNKAAKEMKERVNAILASGGE-------------------------------------- 87 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ +F I D + L++ K Sbjct: 88 DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 134 >gi|261855720|ref|YP_003263003.1| UvrD/REP helicase [Halothiobacillus neapolitanus c2] gi|261836189|gb|ACX95956.1| UvrD/REP helicase [Halothiobacillus neapolitanus c2] Length = 728 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 76/197 (38%), Gaps = 37/197 (18%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 ++ +D +++ + E + P+ + V A AGSGKT +L R+ L ++L +T Sbjct: 3 NKILDPLNEAQRE--AVTSPSLATLVLAGAGSGKTRVLTHRMAWLHDEQGLSLHSMLAVT 60 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ ++ PN++ + G Sbjct: 61 FTNKAAGEMRQRLSTLLA---------------------PNEA---------SSASSGLG 90 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 GL V T H+ +++ EAN+ S F I D + +L K L +D Sbjct: 91 GLWVGTFHSLSNRLLRMHHQEANLPSSFQILDSDDQLRL----VKRMLREANMDETRWPP 146 Query: 190 KAFYEILEISNDEDIET 206 + ++ ++ + Sbjct: 147 RMVAGLINGWKEQGLRA 163 >gi|312130397|ref|YP_003997737.1| uvrd/rep helicase [Leadbetterella byssophila DSM 17132] gi|311906943|gb|ADQ17384.1| UvrD/REP helicase [Leadbetterella byssophila DSM 17132] Length = 757 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 58/163 (35%), Gaps = 39/163 (23%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 D ++ Q A + + A AGSGKT +L R+ L+ P +L LT T Sbjct: 3 DYLAGLNEPQREAVTHIDGPLMIIAGAGSGKTRVLTYRIAYLIEKGVDPFNILALTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM HR+ ++I + L + Sbjct: 63 AAEEMRHRIEKVIGPEAK--------------------------------------NLWM 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ + TS+F I D + SK L+ K Sbjct: 85 GTFHSVFSKILRFDGHKLGYTSNFTIYDTDDSKSLLRSIIKEM 127 >gi|289573579|ref|ZP_06453806.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis K85] gi|289538010|gb|EFD42588.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis K85] Length = 694 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 44/232 (18%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 + +D ++ + + ++ + A AGSGKT +L +R+ L+ A +L +T Sbjct: 18 QLLDGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV+ ++ KAR+ Sbjct: 76 TNKAAAEMRERVVGLVG---------------------------EKARY----------- 97 Query: 131 LKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + V T H+ C I++ + S+F+I D + S++L++ + I + L Sbjct: 98 MWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLA 157 Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 A + D ++ + + L ++R++ + Sbjct: 158 NAISNLKNELIDP--HQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDF 207 >gi|254829488|ref|ZP_05234175.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N3-165] gi|284802203|ref|YP_003414068.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5578] gi|284995345|ref|YP_003417113.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5923] gi|258601903|gb|EEW15228.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N3-165] gi|284057765|gb|ADB68706.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5578] gi|284060812|gb|ADB71751.1| ATP-dependent DNA helicase [Listeria monocytogenes 08-5923] Length = 733 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E +D ++ ++ + A AGSGKT +L R+ L+ +P +L +T Sbjct: 7 ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 64 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + Sbjct: 65 TNKAAREMKSRIGNLMGGEAE--------------------------------------S 86 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ +F I D +I+ K Sbjct: 87 IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 131 >gi|257068093|ref|YP_003154348.1| ATP-dependent DNA helicase PcrA [Brachybacterium faecium DSM 4810] gi|256558911|gb|ACU84758.1| ATP-dependent DNA helicase PcrA [Brachybacterium faecium DSM 4810] Length = 932 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 71/192 (36%), Gaps = 46/192 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 E ++ ++ + E + A AGSGKT +L +R+ LL A P +L +T Sbjct: 117 ELVEGLNPAQRE--AVEHRGSPLLIVAGAGSGKTRVLTRRIAHLLHSREALPGEILAITF 174 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV E++ + Sbjct: 175 TNKAAAEMRERVGELVGPVAR--------------------------------------S 196 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + V T H+ C I+++ A + S F I D S +LI K + LD + + Sbjct: 197 MWVSTFHSACVRILRRDAAAAGLKSSFTIYDSADSLRLITTIAKD----LQLDTKKHAPR 252 Query: 191 AFY-EILEISND 201 A I + ND Sbjct: 253 ALASRISSLKND 264 >gi|194015861|ref|ZP_03054476.1| ATP-dependent DNA helicase PcrA [Bacillus pumilus ATCC 7061] gi|194012216|gb|EDW21783.1| ATP-dependent DNA helicase PcrA [Bacillus pumilus ATCC 7061] Length = 740 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 41/167 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 + ++ ++ + E + A+D + A AGSGKT +L R+ L+ + P +L + Sbjct: 5 SNHLLEGLNDAQKEAVKATD--GPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAI 62 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV I+ + Sbjct: 63 TFTNKAAREMRERVQAILGPGA-------------------------------------- 84 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ + +F+I D +I+ K Sbjct: 85 DDIWISTFHSMCVRILRRDIDRIGVNRNFSILDTSDQLSVIKNILKE 131 >gi|157691415|ref|YP_001485877.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032] gi|157680173|gb|ABV61317.1| ATP-dependent DNA helicase [Bacillus pumilus SAFR-032] Length = 740 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 41/167 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 + ++ ++ + E + A+D + A AGSGKT +L R+ L+ + P +L + Sbjct: 5 SNHLLEGLNDAQKEAVKATD--GPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAI 62 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV I+ + Sbjct: 63 TFTNKAAREMRERVQAILGPGA-------------------------------------- 84 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ + +F+I D +I+ K Sbjct: 85 DDIWISTFHSMCVRILRRDIDRIGVNRNFSILDTSDQLSVIKNILKE 131 >gi|86358422|ref|YP_470314.1| DNA helicase II protein [Rhizobium etli CFN 42] gi|86282524|gb|ABC91587.1| DNA helicase II protein [Rhizobium etli CFN 42] Length = 808 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 71/192 (36%), Gaps = 43/192 (22%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D ++ EQ A + V A AG+GKT +L R+ +L A PS +L +T T Sbjct: 36 DYLAGLNPEQTEAVETLEGPVLVLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTN 95 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ G Sbjct: 96 KAAREMKERIALLVGGAVE-------------------------------------GMPW 118 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ ++++ ++S F I D + +LI++ + + LD+ K F Sbjct: 119 LGTFHSIGVKLLRRHAELVGLSSDFTILDTDDVVRLIKQ----LIQAEGLDDKRWPAKQF 174 Query: 193 YEILEISNDEDI 204 +++ ++ + Sbjct: 175 AGMIDTWKNKGL 186 >gi|46907989|ref|YP_014378.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 4b F2365] gi|46881259|gb|AAT04555.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes serotype 4b str. F2365] Length = 733 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E +D ++ ++ + A AGSGKT +L R+ L+ +P +L +T Sbjct: 7 ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 64 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + Sbjct: 65 TNKAAREMKSRIGNLMGGEAE--------------------------------------S 86 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ +F I D +I+ K Sbjct: 87 IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 131 >gi|81300977|ref|YP_401185.1| ATP-dependent DNA helicase Rep [Synechococcus elongatus PCC 7942] gi|81169858|gb|ABB58198.1| ATP-dependent DNA helicase, Rep family [Synechococcus elongatus PCC 7942] Length = 794 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 23/174 (13%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D +SQ + Q A + + V A AGSGKT L R+ LL + P +L +T T Sbjct: 4 DFLSQLNTSQRRAVEHYSGPLLVVAGAGSGKTRALTFRIAHLLRQHRVDPENILAVTFTN 63 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL--ETPGG 130 AA EM R+ + + ++ ++Q +P + + L + + E Sbjct: 64 KAAKEMKERLERLF-----------AQQLAELQYGQPFTTLREIEKTQLRSRVYREVTKD 112 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSH-------FAIADEEQSKKLIEEAKKSTL 177 L + T HA C I++ F ++ + F+I DE + LI+E + L Sbjct: 113 LWIGTFHAICARILR-FDIDKYCDPNGRRWTKQFSIFDENDVQGLIKEIVGNQL 165 >gi|325300614|ref|YP_004260531.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170] gi|324320167|gb|ADY38058.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170] Length = 753 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 39/167 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 ++ +D +++++ E +L D + V A AGSGKT +L ++ LL P ++L LT Sbjct: 1 MADFLDGLNESQREAVLYVD--GPSLVIAGAGSGKTRVLTYKIAYLLDQGYEPWSILALT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ + A +AR+L Sbjct: 59 FTNKAAREMKERIAGQVGA--------------------------DRARYL--------- 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ +S F I D SK LI+ K Sbjct: 84 --WMGTFHSIFSRILRFEAGALGFSSDFTIYDAADSKSLIKSIIKEM 128 >gi|226224362|ref|YP_002758469.1| ATP-dependent DNA helicase [Listeria monocytogenes Clip81459] gi|225876824|emb|CAS05533.1| ATP-dependent DNA helicase [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 731 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E +D ++ ++ + A AGSGKT +L R+ L+ +P +L +T Sbjct: 5 ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 62 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + Sbjct: 63 TNKAAREMKSRIGNLMGGEAE--------------------------------------S 84 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ +F I D +I+ K Sbjct: 85 IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 129 >gi|293377660|ref|ZP_06623849.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium PC4.1] gi|292643660|gb|EFF61781.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium PC4.1] Length = 744 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 +E ++ ++ + E +L +D + A AGSGKT +L R+ L+ +P +L +T Sbjct: 5 AELLNGMNPRQKEAVLHND--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV I+ + Sbjct: 63 FTNKAAKEMKERVNAILASGGE-------------------------------------- 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ +F I D + L++ K Sbjct: 85 DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 131 >gi|322391963|ref|ZP_08065427.1| exonuclease RexA [Streptococcus peroris ATCC 700780] gi|321145189|gb|EFX40586.1| exonuclease RexA [Streptococcus peroris ATCC 700780] Length = 1215 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 81/222 (36%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L L T T AA E+ Sbjct: 26 TTEQIQAIYSSGQNILVSASAGSGKTFVMAERILDQLARGVEIRQLFISTFTVKAATELK 85 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + KI + D+ +HL + + P + T+ +F Sbjct: 86 ERLEK------------------KISQQIQETQDLELKKHLGRQLADLPNAA-IGTMDSF 126 Query: 140 CEAIMQQFPLEANITSHFAIAD-EEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + + + N++ +F I + E + L E + S + K F +++ Sbjct: 127 TQKFLTKHGYLLNLSPNFRILENESEQLLLKNEVFRQVFESHYQGQD---KDNFSRLVKN 183 Query: 199 SNDEDIETLISDIISNRTALKLIF-FFFSYLWRRKIIEKSLW 239 D R + +I+ F S + +E S Sbjct: 184 FAGRS-----KDARGLRKQVYMIYDFLQSTSNPQSWLEASFL 220 >gi|224476962|ref|YP_002634568.1| ATP-dependent DNA helicase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421569|emb|CAL28383.1| ATP-dependent DNA helicase [Staphylococcus carnosus subsp. carnosus TM300] Length = 731 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 41/167 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68 + +D ++ +SE + ++ + A AGSGKT +L R+ LL P +L + Sbjct: 1 MNALLDNMNTEQSEAVRTTE--GPLLIMAGAGSGKTRVLTHRIAYLLDEKGVSPYNVLAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV +++ + Sbjct: 59 TFTNKAAREMKERVEKLVGEEAQ------------------------------------- 81 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D K +I++ K Sbjct: 82 -AIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKR 127 >gi|47095685|ref|ZP_00233292.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 1/2a F6854] gi|254900736|ref|ZP_05260660.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes J0161] gi|254913779|ref|ZP_05263791.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes J2818] gi|254938166|ref|ZP_05269863.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes F6900] gi|47015970|gb|EAL06896.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 1/2a F6854] gi|258610779|gb|EEW23387.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes F6900] gi|293591795|gb|EFG00130.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes J2818] Length = 733 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E +D ++ ++ + A AGSGKT +L R+ L+ +P +L +T Sbjct: 7 ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 64 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + Sbjct: 65 TNKAAREMKSRIGNLMGGEAE--------------------------------------S 86 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ +F I D +I+ K Sbjct: 87 IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 131 >gi|222529276|ref|YP_002573158.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725] gi|222456123|gb|ACM60385.1| UvrD/REP helicase [Caldicellulosiruptor bescii DSM 6725] Length = 714 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 39/165 (23%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ + + +Q A V A AGSGKT ++ R+ +L A+P+ +L +T T Sbjct: 1 MEWLKELNDQQKEAVLSTEGPLLVLAGAGSGKTRVITYRIAYILNMGLANPANILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +++ ++ + Sbjct: 61 NKAADEMKERIKRLVST-------------------------------------QSFSEM 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HA C I++ +++F I D + +L++E Sbjct: 84 WVSTFHAACARILRMEAHNIGFSNNFVIFDAQDRNQLLKECFDKL 128 >gi|119493842|ref|ZP_01624409.1| ATP-dependent DNA helicase PcrA [Lyngbya sp. PCC 8106] gi|119452434|gb|EAW33623.1| ATP-dependent DNA helicase PcrA [Lyngbya sp. PCC 8106] Length = 784 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 83/199 (41%), Gaps = 19/199 (9%) Query: 10 HSETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 ++T+D +S Q A + V A AGSGKT L R+ LL + HP +L Sbjct: 1 MTQTVDFLSHLNPSQRQAVEHFCGPMLVVAGAGSGKTRALTYRIANLLRTHRVHPENILA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA E+ RV + S++ + K + + + ++ + Sbjct: 61 VTFTNKAAREIKERVE------AIFSEQQAQTQYQKPFSALTSPEQTNLRSQVYRSVSKQ 114 Query: 128 PGGLKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIM 181 L + T H+ C I++ ++ E +F+I DE ++ L+++ L + Sbjct: 115 ---LWMGTFHSLCARILRYDINKYTDEKGRQWQQNFSIFDESDAQSLVKQIVTKELN--L 169 Query: 182 LDNNEELKKAFYEILEISN 200 D E +K Y+I N Sbjct: 170 DDKKFEPRKVRYQISNAKN 188 >gi|156564011|ref|YP_001429750.1| PcrA helicase [Bacillus phage 0305phi8-36] gi|154622708|gb|ABS83588.1| PcrA helicase [Bacillus phage 0305phi8-36] Length = 657 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 81/231 (35%), Gaps = 69/231 (29%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D ++ + E ++ + S V A AGSGKT +L +RV +L P +L +T T Sbjct: 18 LLDGLNPAQKEAVVKTVKNPS-LVIAGAGSGKTRVLQKRVGYILENGIDPRRILTVTFTN 76 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ + ++A+ ++ Sbjct: 77 KAATEMKERIGNEVGE--------------------------ARAKKIM----------- 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS----------------- 175 + T H+ + Q+ EA + ++ I D E + K+I+E KS Sbjct: 100 IGTFHSLAVRWLHQYYSEAGLKKNWTIFDSEDTNKVIKELLKSNNMDDSKQNVYATQSRI 159 Query: 176 -------TLASIMLDNNEELKKAFYEILEISNDE-------DIETLISDII 212 L E K+F I E D D + LI ++ Sbjct: 160 SNLKNDMILPKDFRKQMEPQDKSFARIYERYQDRMARNNAVDFDDLIMKMV 210 >gi|16803799|ref|NP_465284.1| ATP-dependent DNA helicase [Listeria monocytogenes EGD-e] gi|16411213|emb|CAC99837.1| ATP-dependent DNA helicase [Listeria monocytogenes EGD-e] Length = 731 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E +D ++ ++ + A AGSGKT +L R+ L+ +P +L +T Sbjct: 5 ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 62 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + Sbjct: 63 TNKAAREMKSRIGNLMGGEAE--------------------------------------S 84 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ +F I D +I+ K Sbjct: 85 IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 129 >gi|169831771|ref|YP_001717753.1| ATP-dependent DNA helicase PcrA [Candidatus Desulforudis audaxviator MP104C] gi|169638615|gb|ACA60121.1| ATP-dependent DNA helicase PcrA [Candidatus Desulforudis audaxviator MP104C] Length = 718 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 60/165 (36%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 +D +++ Q A P V A AGSGKT +L R+ L+ + P +L +T T Sbjct: 7 LDFLTELNPAQAEAVCHPGGPLLVLAGAGSGKTRVLTSRIAYLVRVHRVEPHRILAITFT 66 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ L Sbjct: 67 NRAAREMKERVASLVP--------------------------------------HAVDDL 88 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HA C I+++ + + +F I DE + +I++ K Sbjct: 89 WVMTFHAACLRILRREIEKLGYSKNFVIYDEADQQTVIKDCLKEL 133 >gi|49475840|ref|YP_033881.1| DNA helicase II [Bartonella henselae str. Houston-1] gi|49238648|emb|CAF27892.1| DNA helicase II [Bartonella henselae str. Houston-1] Length = 778 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 75/198 (37%), Gaps = 44/198 (22%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q ++ ++ ++ +Q + V A AG+GKT +L R+ +L + A P +L Sbjct: 38 QYSADYLEKLN--PEQQQAVMNTEGPLLVLAGAGTGKTRVLTTRISHILHSGLASPQQIL 95 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ E+I Sbjct: 96 AVTFTNKAAREMKMRIGELIGEIVE----------------------------------- 120 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ I+++ N+ S+F I D + +L+++ + + LD+ Sbjct: 121 --GMPWLGTFHSIGAKILRRHAELVNLKSNFTILDSDDVTRLLKQ----LIQAEGLDDKR 174 Query: 187 ELKKAFYEILEISNDEDI 204 + +++ ++ + Sbjct: 175 WPARNLAIMIDSWKNQGL 192 >gi|314934070|ref|ZP_07841433.1| ATP-dependent DNA helicase PcrA [Staphylococcus caprae C87] gi|313653181|gb|EFS16940.1| ATP-dependent DNA helicase PcrA [Staphylococcus caprae C87] Length = 731 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 39/159 (24%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76 + + + A AGSGKT +L R+ LL + P +L +T T AA Sbjct: 7 NMNTEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV +++ + + + + T Sbjct: 67 EMKERVEQLVGEEAQV--------------------------------------IWMSTF 88 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 H+ C I+++ I +F I D K +I++ K+ Sbjct: 89 HSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127 >gi|261207461|ref|ZP_05922147.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TC 6] gi|260078352|gb|EEW66057.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TC 6] Length = 747 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 +E ++ ++ + E +L +D + A AGSGKT +L R+ L+ +P +L +T Sbjct: 8 AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 65 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV I+ + Sbjct: 66 FTNKAAKEMKERVNAILASGGE-------------------------------------- 87 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ +F I D + L++ K Sbjct: 88 DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 134 >gi|47092912|ref|ZP_00230694.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 4b H7858] gi|254825996|ref|ZP_05230997.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J1-194] gi|254932795|ref|ZP_05266154.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HPB2262] gi|255521959|ref|ZP_05389196.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J1-175] gi|47018738|gb|EAL09489.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes str. 4b H7858] gi|293584348|gb|EFF96380.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HPB2262] gi|293595235|gb|EFG02996.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J1-194] gi|328466511|gb|EGF37654.1| ATP-dependent DNA helicase [Listeria monocytogenes 1816] Length = 733 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E +D ++ ++ + A AGSGKT +L R+ L+ +P +L +T Sbjct: 7 ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 64 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + Sbjct: 65 TNKAAREMKSRIGNLMGGEAE--------------------------------------S 86 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ +F I D +I+ K Sbjct: 87 IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 131 >gi|254853669|ref|ZP_05243017.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL R2-503] gi|300765955|ref|ZP_07075927.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N1-017] gi|258607048|gb|EEW19656.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL R2-503] gi|300513341|gb|EFK40416.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL N1-017] Length = 733 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E +D ++ ++ + A AGSGKT +L R+ L+ +P +L +T Sbjct: 7 ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 64 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + Sbjct: 65 TNKAAREMKSRIGNLMGGEAE--------------------------------------S 86 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ +F I D +I+ K Sbjct: 87 IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 131 >gi|301165556|emb|CBW25127.1| ATP-dependent DNA helicase [Bacteriovorax marinus SJ] Length = 752 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 59/158 (37%), Gaps = 39/158 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +DL + ++ + A AGSGKT LV R+ LL + P +L LT + Sbjct: 4 MDLSGLNEQQRKAVLRTDGPVMILAGAGSGKTKTLVTRISYLLEELHVSPYQVLALTFSN 63 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ A G L+ Sbjct: 64 KAAREMRDRIGSMVEADV--------------------------------------GALQ 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 + T HAFC I++ ++ +F I D + K +++ Sbjct: 86 ITTFHAFCARILRSEANYLGLSRNFTIYDTSEQKAVVK 123 >gi|289761084|ref|ZP_06520462.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis GM 1503] gi|289708590|gb|EFD72606.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis GM 1503] Length = 702 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 44/232 (18%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 + +D ++ + + ++ + A AGSGKT +L +R+ L+ A +L +T Sbjct: 18 QLLDGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV+ ++ KAR+ Sbjct: 76 TNKAAAEMRERVVGLVG---------------------------EKARY----------- 97 Query: 131 LKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + V T H+ C I++ + S+F+I D + S++L++ + I + L Sbjct: 98 MWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLA 157 Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 A + D ++ + + L ++R++ + Sbjct: 158 NAISNLKNELIDP--HQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDF 207 >gi|217964093|ref|YP_002349771.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HCC23] gi|217333363|gb|ACK39157.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes HCC23] Length = 731 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E +D ++ ++ + A AGSGKT +L R+ L+ +P +L +T Sbjct: 5 ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 62 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + Sbjct: 63 TNKAAREMKSRIGNLMGGEAE--------------------------------------S 84 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ +F I D +I+ K Sbjct: 85 IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 129 >gi|229119951|ref|ZP_04249206.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 95/8201] gi|228663417|gb|EEL19002.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 95/8201] Length = 751 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMNMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|163741587|ref|ZP_02148978.1| DNA helicase II, putative [Phaeobacter gallaeciensis 2.10] gi|161385321|gb|EDQ09699.1| DNA helicase II, putative [Phaeobacter gallaeciensis 2.10] Length = 786 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 70/193 (36%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ + + + + A AG+GKT L R++ LL A P+ +L +T T Sbjct: 27 YLDGLNPAQRAAVECLE--GPVLMLAGAGTGKTKALTARIVHLLTTGTAKPNEILAVTFT 84 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ G Sbjct: 85 NKAAREMKERVAGMLGQAVE-------------------------------------GMP 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C ++++ + S+F I D + +L+++ + + +D+ + Sbjct: 108 WLGTFHSICVKLLRRHAELVGLKSNFTILDTDDQIRLLKQ----LIKAEGIDDKRWPARM 163 Query: 192 FYEILEISNDEDI 204 +++ + + Sbjct: 164 LAGVIDDWKNRAL 176 >gi|157149814|ref|YP_001450693.1| first chain of major exonuclease RexA [Streptococcus gordonii str. Challis substr. CH1] gi|251764541|sp|A8AY33|ADDA_STRGC RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|157074608|gb|ABV09291.1| first chain of major exonuclease RexA [Streptococcus gordonii str. Challis substr. CH1] Length = 1216 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 80/222 (36%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++VQR++ +L L T T AA E+ Sbjct: 29 TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVSIQELFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + ++ S + + + L L + T+ +F Sbjct: 89 ERLEKELSKVLKESQD-------------------EELKQHLAKQLAAIATADIGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ ++ + +F I + L E + +E+ F ++++ Sbjct: 130 TQKLLNKYGYLLGLAPNFRILQSASEQTMLQNEVFQQLFEQYYTGEQKEI---FEKLVKN 186 Query: 199 SNDEDIETLISDIISNRTALKLIF-FFFSYLWRRKIIEKSLW 239 + +I R + I+ F S ++ ++ Sbjct: 187 FTGKK-----KNISGFRQQVYAIYQFLQSTSNPQRWLQDFFL 223 >gi|88811691|ref|ZP_01126945.1| possible ATP-dependent exodeoxyribonuclease subunit A [Nitrococcus mobilis Nb-231] gi|88791082|gb|EAR22195.1| possible ATP-dependent exodeoxyribonuclease subunit A [Nitrococcus mobilis Nb-231] Length = 1117 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 46/209 (22%), Positives = 87/209 (41%), Gaps = 14/209 (6%) Query: 10 HSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 SE ID ++L A S V A AGSGKT ++ R++ L P + + Sbjct: 1 MSELID-----HRQRLRALTAIDSTLLVEAGAGSGKTALMAGRIVYSLAQGIEPGRIAAI 55 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T+ AA ++ R+ + + + ++ AR L Sbjct: 56 TFTELAAGQLLIRIRGFLERALRGETPVELQAAFPKGLSDAERIRLTTARERLAE----- 110 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-E 187 L TIH FC+ +++ +P+EA+I AI D ++ ++ ++ L + +E + Sbjct: 111 --LTATTIHGFCQQLIRPYPVEADIDPGAAIMDAPAAELAWQDLLEAFLRERLEAADEGD 168 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRT 216 AF E ++ +I+ + + +R+ Sbjct: 169 PLVAFIEAAGANSAAEIDRIARFLRRSRS 197 >gi|224499522|ref|ZP_03667871.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes Finland 1988] gi|224503315|ref|ZP_03671622.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL R2-561] Length = 733 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E +D ++ ++ + A AGSGKT +L R+ L+ +P +L +T Sbjct: 7 ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 64 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + Sbjct: 65 TNKAAREMKSRIGNLMGGEAE--------------------------------------S 86 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ +F I D +I+ K Sbjct: 87 IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 131 >gi|302343284|ref|YP_003807813.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075] gi|301639897|gb|ADK85219.1| UvrD/REP helicase [Desulfarculus baarsii DSM 2075] Length = 1159 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 33/186 (17%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH-----PSTLLCLTHTKAAAAEMSHRVLEI 85 R+ V+A AG+GKT LV+ + LL N P ++ +T T+ AAAEM RV++ Sbjct: 9 ERNYCVTAGAGAGKTSCLVKAYVGLLAGNDQRPPLAPRQIVAITFTEKAAAEMRGRVMDR 68 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + A + + I +++ + TIH FC A+++ Sbjct: 69 VAALAAKEGGRWAEIINQLEWSP------------------------ISTIHGFCAALLR 104 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 ++ + FAI D + +++ EA L M ++ L + +DIE Sbjct: 105 EYGSLLGLDPDFAILDGQAFDEMLSEAVAEVLRQAMDHDDPALGRLLMH----HGMDDIE 160 Query: 206 TLISDI 211 + + Sbjct: 161 AKLRAL 166 >gi|240850877|ref|YP_002972277.1| DNA helicase II [Bartonella grahamii as4aup] gi|240268000|gb|ACS51588.1| DNA helicase II [Bartonella grahamii as4aup] Length = 779 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 73/203 (35%), Gaps = 43/203 (21%) Query: 4 HNSFQEHSETIDLISQTK-SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61 H ++ S D + Q +Q + V A AG+GKT +L R+ +L + A Sbjct: 30 HTLKEQKSYNTDYLKQLNPEQQQAVMNTEGPLLVLAGAGTGKTRVLTTRISHILRSGLAS 89 Query: 62 PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121 P +L +T T AA EM R+ E+I Sbjct: 90 PQQILAVTFTNKAAREMKTRIGELIGGVVE------------------------------ 119 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 G + T H+ I+++ + +F I D + +L+++ + + Sbjct: 120 -------GMPWLGTFHSTGAKILRRHAELVGLKRNFTILDSDDVLRLLKQ----LIQAEG 168 Query: 182 LDNNEELKKAFYEILEISNDEDI 204 LD+ + +++ ++ + Sbjct: 169 LDDKRWPARNLAMMIDSWKNQGL 191 >gi|227551669|ref|ZP_03981718.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX1330] gi|257895731|ref|ZP_05675384.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com12] gi|227179232|gb|EEI60204.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium TX1330] gi|257832296|gb|EEV58717.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com12] Length = 747 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 +E ++ ++ + E +L +D + A AGSGKT +L R+ L+ +P +L +T Sbjct: 8 AELLNGMNPRQKEAVLHND--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 65 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV I+ + Sbjct: 66 FTNKAAKEMKERVNAILASGGE-------------------------------------- 87 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ +F I D + L++ K Sbjct: 88 DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 134 >gi|116630137|ref|YP_815309.1| superfamily I DNA/RNA helicase [Lactobacillus gasseri ATCC 33323] gi|116095719|gb|ABJ60871.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri ATCC 33323] Length = 757 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 67/178 (37%), Gaps = 40/178 (22%) Query: 1 MIYHNSFQEHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA- 58 M + +E ++++ +Q A V A AGSGKT +L +R+ L+ Sbjct: 1 MFRLSGKREAMSEETILAELNPQQKKAVQCTEGPLLVVAGAGSGKTSVLTRRIAYLIEEK 60 Query: 59 NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118 P +L +T T AA EM RV +++ + Sbjct: 61 GVAPWNVLAITFTNKAATEMKERVQKLLGPAA---------------------------- 92 Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T HA C I+++ + +++F+IAD + LI+ +K Sbjct: 93 ----------DSVWMSTFHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDL 140 >gi|313683463|ref|YP_004061201.1| uvrd/rep helicase [Sulfuricurvum kujiense DSM 16994] gi|313156323|gb|ADR35001.1| UvrD/REP helicase [Sulfuricurvum kujiense DSM 16994] Length = 900 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 6/140 (4%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT LV R L LL +PS+++ LT T AA EM R++ + S+ Sbjct: 10 EASAGSGKTFNLVVRYLSLLFMGENPSSIIALTFTNKAANEMLERIILTLEELPKRSELS 69 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 A ++ I K + + +L L +++ TI F I+++F L A + Sbjct: 70 QIARLSGIDEAKI----LEERPKVLARFLR--SDIQISTIDKFFGRILRKFALNAGLMPT 123 Query: 157 FAIADEEQSKKLIEEAKKST 176 F + L+E Sbjct: 124 FKTIQNQHETALLERFLNEV 143 >gi|242309299|ref|ZP_04808454.1| helicase [Helicobacter pullorum MIT 98-5489] gi|239524340|gb|EEQ64206.1| helicase [Helicobacter pullorum MIT 98-5489] Length = 921 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 5/138 (3%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA---WS 90 ++A+AGSGKT+ LV R L LL A PS +L LT TK AA EM R+ + I + Sbjct: 6 LCLNASAGSGKTYRLVLRYLELLFLGAKPSEILTLTFTKKAAKEMEERIAKSIGEIYQYR 65 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + D I E I+ K K + + L+ LK+ TI +F + I++ F Sbjct: 66 NDIDYINKLECISIKDKNDFGKLQEKIHQIYHSFLK--EDLKITTIDSFFQRILKSFCWY 123 Query: 151 ANITSHFAIADEEQSKKL 168 + F I +++ K + Sbjct: 124 VGVEYDFEIQSDDREKII 141 >gi|206968237|ref|ZP_03229193.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH1134] gi|228950847|ref|ZP_04112970.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068047|ref|ZP_04201355.1| ATP-dependent DNA helicase pcrA [Bacillus cereus F65185] gi|229077650|ref|ZP_04210280.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock4-2] gi|229188562|ref|ZP_04315601.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 10876] gi|206737157|gb|EDZ54304.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH1134] gi|228594751|gb|EEK52531.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 10876] gi|228705591|gb|EEL57947.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock4-2] gi|228715055|gb|EEL66922.1| ATP-dependent DNA helicase pcrA [Bacillus cereus F65185] gi|228808776|gb|EEM55272.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 753 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|289550376|ref|YP_003471280.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus lugdunensis HKU09-01] gi|289179908|gb|ADC87153.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus lugdunensis HKU09-01] Length = 746 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 67/189 (35%), Gaps = 44/189 (23%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ EQ A + A AGSGKT +L R+ LL P +L +T T Sbjct: 4 LVANMNDEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLNEKGVSPYNILAITFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ + + + + Sbjct: 64 AAKEMKQRVEQLVGEEASV--------------------------------------IWM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ C I+++ I +F I D K +I K L + +D+ + + F Sbjct: 86 STFHSMCVKILRRDADRIGIERNFTIIDPTDQKSVI----KDVLKNENIDSKKFEPRMFI 141 Query: 194 EILEISNDE 202 + +E Sbjct: 142 SAISNLKNE 150 >gi|237741609|ref|ZP_04572090.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 4_1_13] gi|229429257|gb|EEO39469.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 4_1_13] Length = 735 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 41/165 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 ++ ++ + E AS S + A AGSGKT + R+ ++ P ++L +T Sbjct: 1 MNLLEKLNDKQRE--AASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV +++ + Sbjct: 59 FTNKAAKEMRERVEDLVGDIAKAC------------------------------------ 82 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + T H+F +++ + E S+F I D + K++++ K Sbjct: 83 --TISTFHSFGMRLLRMYAKEVGYNSNFTIYDTDDQKRIVKAILK 125 >gi|225388641|ref|ZP_03758365.1| hypothetical protein CLOSTASPAR_02377 [Clostridium asparagiforme DSM 15981] gi|225045317|gb|EEG55563.1| hypothetical protein CLOSTASPAR_02377 [Clostridium asparagiforme DSM 15981] Length = 769 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 39/155 (25%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q V A AGSGKT +L RV L+ +P ++ +T T AA EM R Sbjct: 2 QQEAVFCTEGPLLVLAGAGSGKTRVLTHRVAYLIEEKEVNPWNIMAITFTNKAAGEMRER 61 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V +++ + + V T H+ C Sbjct: 62 VDKLVGFGAE--------------------------------------SIWVSTFHSSCV 83 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 I+++ ++ F+I D + + L+++ K+ Sbjct: 84 RILRRHIEALGYSTSFSIYDTDDQRTLMKQVFKTL 118 >gi|284045042|ref|YP_003395382.1| UvrD/REP helicase [Conexibacter woesei DSM 14684] gi|283949263|gb|ADB52007.1| UvrD/REP helicase [Conexibacter woesei DSM 14684] Length = 746 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 41/174 (23%) Query: 6 SFQEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62 S H +D L + ++ + A AGSGKT +L R+ L+ A P Sbjct: 2 SANAHVADLDALLAGLNEPQREAVVHGEGPLLILAGAGSGKTRVLTHRIAYLVGTGQARP 61 Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122 +L +T T AA EM RV ++ + Sbjct: 62 DEILAITFTNKAAQEMRERVEMLVGRRTR------------------------------- 90 Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C +++ T F I D+ +++L++ A + Sbjct: 91 -------AMWVMTFHSACARMLRADAHRLGYTRQFTIYDQSDARRLVKRAIEEL 137 >gi|290893415|ref|ZP_06556400.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J2-071] gi|290557066|gb|EFD90595.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL J2-071] gi|307571339|emb|CAR84518.1| ATP-dependent DNA helicase [Listeria monocytogenes L99] Length = 733 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E +D ++ ++ + A AGSGKT +L R+ L+ +P +L +T Sbjct: 7 ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 64 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + Sbjct: 65 TNKAAREMKSRIGNLMGGEAE--------------------------------------S 86 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ +F I D +I+ K Sbjct: 87 IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 131 >gi|229095008|ref|ZP_04226004.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-29] gi|229113961|ref|ZP_04243387.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-3] gi|228669420|gb|EEL24836.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-3] gi|228688338|gb|EEL42220.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-29] Length = 749 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|294618098|ref|ZP_06697695.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1679] gi|291595670|gb|EFF26966.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1679] Length = 744 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 +E ++ ++ + E +L +D + A AGSGKT +L R+ L+ +P +L +T Sbjct: 5 AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV I+ + Sbjct: 63 FTNKAAKEMKERVNAILASGGE-------------------------------------- 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ +F I D + L++ K Sbjct: 85 DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 131 >gi|154487471|ref|ZP_02028878.1| hypothetical protein BIFADO_01324 [Bifidobacterium adolescentis L2-32] gi|154083989|gb|EDN83034.1| hypothetical protein BIFADO_01324 [Bifidobacterium adolescentis L2-32] Length = 896 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 40/164 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 I+ ++ + E + ++ + A AGSGKT +L +R+ LL S++L +T T Sbjct: 28 LIEGLNPQQEEAVKYY--GQALLIGAGAGSGKTRVLTRRIAWLLAHGFWASSILAITFTN 85 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R++ ++ + + Sbjct: 86 KAAAEMRERLVTLVGPEAEH--------------------------------------MW 107 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ E + S F+I D S++L++ Sbjct: 108 ISTFHSACVRILRRDGKEIGLKSGFSIYDTADSERLVKLIAADL 151 >gi|323490411|ref|ZP_08095623.1| ATP-dependent DNA helicase pcrA [Planococcus donghaensis MPA1U2] gi|323395910|gb|EGA88744.1| ATP-dependent DNA helicase pcrA [Planococcus donghaensis MPA1U2] Length = 737 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 78/217 (35%), Gaps = 45/217 (20%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L++ EQ A + A AGSGKT +L R+ L+L +PS +L +T T Sbjct: 7 NLLNGMNPEQAEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLVLEKQVYPSNILAITFTN 66 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM +R+ ++ T + Sbjct: 67 KAAREMRNRIDGLLGHG-------------------------------------TGQRMW 89 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 T H+ C I+++ + ++ +F+I D +I K+ L LD + + Sbjct: 90 ASTFHSMCVRILRRDIDKLGMSKNFSILDTTDQLTVI----KNVLKQQNLDPKKYEPRTM 145 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLW 229 + S +E I+ + ++ S ++ Sbjct: 146 LNAISSSKNECIDA--AQFAADMNQFNPYEKTVSDVY 180 >gi|320161958|ref|YP_004175183.1| ATP-dependent DNA helicase PcrA [Anaerolinea thermophila UNI-1] gi|319995812|dbj|BAJ64583.1| ATP-dependent DNA helicase PcrA [Anaerolinea thermophila UNI-1] Length = 737 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 61/165 (36%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D + +Q A + V A GSGKT +L R+ LL P +L +T T Sbjct: 1 MDSLEHLNPQQRAAVTASAGPVLVLAGPGSGKTRVLTFRIGYLLSQLGVAPHHILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +++ + G+ Sbjct: 61 NKAAREMQSRVEKLLG--------------------------------------HSLQGM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T HA C I+++ + ++F I DE+ + LI+ A + Sbjct: 83 WLGTFHAICARILRREQQYLPLDANFVIFDEDDQQALIKRALRDL 127 >gi|227554836|ref|ZP_03984883.1| possible ATP-dependent DNA helicase PcrA [Enterococcus faecalis HH22] gi|227176036|gb|EEI57008.1| possible ATP-dependent DNA helicase PcrA [Enterococcus faecalis HH22] Length = 405 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 67/194 (34%), Gaps = 44/194 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 51 NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + V T H+ Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILE 197 C I+++ + +F I D + K L+ K L + +D+ + + + I Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLM----KRILNDLNIDSKKYDPRSILGTISN 188 Query: 198 ISNDEDIETLISDI 211 N+ ++++ Sbjct: 189 AKNELQTPEKVAEM 202 >gi|257898302|ref|ZP_05677955.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com15] gi|257836214|gb|EEV61288.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium Com15] Length = 748 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 +E ++ ++ + E +L +D + A AGSGKT +L R+ L+ +P +L +T Sbjct: 8 AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 65 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV I+ + Sbjct: 66 FTNKAAKEMKERVNAILASGGE-------------------------------------- 87 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ +F I D + L++ K Sbjct: 88 DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 134 >gi|228956727|ref|ZP_04118513.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802915|gb|EEM49747.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar pakistani str. T13001] Length = 761 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|329117216|ref|ZP_08245933.1| ATP-dependent nuclease subunit A [Streptococcus parauberis NCFD 2020] gi|326907621|gb|EGE54535.1| ATP-dependent nuclease subunit A [Streptococcus parauberis NCFD 2020] Length = 1212 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 85/221 (38%), Gaps = 27/221 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++V+R++ LL + T T AA E+ Sbjct: 29 TPEQIEAIYTSGQNVLVSASAGSGKTFVMVERIIDKLLRGVAIEEMFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + + SD+ + + L L++ + T+ +F Sbjct: 89 ERLEKKLVEAIKASDDY-------------------EMKSFLNYQLQSIHIADIGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EI 198 + ++ ++ I + I ++ + +I++ L I + ++E F ++ Sbjct: 130 TQKLISEYGYTLGIAPKYRIMQDKSEQDVIKDIIYKDLFEIYMASDETGD--FLRLVKNF 187 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 S + +I++ K+ F S +++ Sbjct: 188 SGNRKDSNGFKEIVN-----KVYTFSQSTENPLLWLDEVFL 223 >gi|325860071|ref|ZP_08173197.1| ATP-dependent helicase PcrA [Prevotella denticola CRIS 18C-A] gi|325482356|gb|EGC85363.1| ATP-dependent helicase PcrA [Prevotella denticola CRIS 18C-A] Length = 842 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 42/188 (22%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 +++S Q A + T + V A AGSGKT +L ++ LL P +L LT T Sbjct: 9 EILSALNESQRAAVEYCTGPSLVIAGAGSGKTRVLTYKIAYLLNKGLSPWNILALTFTNK 68 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ I TA +A+ L + Sbjct: 69 AAREMKERIARITTAG--------------------------EAQRLYM----------- 91 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ I+++ + +F I DE S+ LI KS + ++ LD + + Sbjct: 92 GTFHSIFSRILRREGQAVGFSGNFTIYDETDSRSLI----KSIVKALGLDEKAYKPSSVH 147 Query: 194 EILEISND 201 + ++ + Sbjct: 148 SFISMAKN 155 >gi|304317509|ref|YP_003852654.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779011|gb|ADL69570.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 716 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 53/205 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 +D ++ + E ++ ++ + A AGSGKT +L R+ L+ P+ +L +T Sbjct: 1 MNILDKLNDRQKEAVVTTE--GPLLILAGAGSGKTRVLTHRIAYLIKEKRVSPANILAIT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV ++ G Sbjct: 59 FTNKAAQEMKDRVESLLGYV---------------------------------------G 79 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LA 178 + V T H+ C I+++ + +F I D + K L+ + K + Sbjct: 80 DIWVSTFHSACVRILRRDIEKIGYDKNFVIYDTQDQKSLVSDCIKELDLNEKQYTPKSML 139 Query: 179 SIMLDNNEELKKAFYEILEISNDED 203 S + +++ +LE ND Sbjct: 140 SAISKAKDKMISPDEYLLEFGNDYR 164 >gi|261409570|ref|YP_003245811.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. Y412MC10] gi|261286033|gb|ACX68004.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. Y412MC10] Length = 776 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 72/192 (37%), Gaps = 45/192 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 + + ++ + + + A+D + A AGSGKT +L R+ L+ A P ++L +T Sbjct: 8 DAVRRLNPQQRQAVEATD--GPLLIMAGAGSGKTRVLTHRIAYLIATRKAAPWSILAITF 65 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV +++ Sbjct: 66 TNKAAREMQERVSKLVGREGQ--------------------------------------D 87 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + V T H+ C I+++ TS+F+I D +I ++ + +D + K Sbjct: 88 IWVSTFHSMCVRILRRDIERIGFTSNFSILDSTDQLSVI----RNVMKQHNIDPKKFEPK 143 Query: 191 AFYEILEISNDE 202 A + + +E Sbjct: 144 AVQAAMSAAKNE 155 >gi|118443009|ref|YP_878906.1| ATP-dependent DNA helicase PcrA, putative [Clostridium novyi NT] gi|118133465|gb|ABK60509.1| ATP-dependent DNA helicase PcrA, putative [Clostridium novyi NT] Length = 760 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHT 71 +DL EQ A+ V A AGSGKT +L R+ ++ P +L +T T Sbjct: 1 MDLKKLLNKEQYEAATAIEGPVLVLAGAGSGKTRVLTYRIAHMIEDLGIPQYNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++++ + Sbjct: 61 NKAAGEMKDRIKKLVS--------------------------------------NNIDSM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + +FAI D K L+++ K Sbjct: 83 WVSTFHSSCVRILRREIDKLGYNKNFAIYDSTDQKNLVKQCMKEL 127 >gi|323463999|gb|ADX76152.1| ATP-dependent DNA helicase PcrA [Staphylococcus pseudintermedius ED99] Length = 731 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 75/223 (33%), Gaps = 47/223 (21%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76 + K + + A AGSGKT +L R+ LL + P +L +T T AA Sbjct: 7 NMNKEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV ++ + + + + T Sbjct: 67 EMKERVQALVGEEAEV--------------------------------------IWMSTF 88 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+ C I+++ I +F I D K +I++ K + E + EI Sbjct: 89 HSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKR---ENIDPKKYEPRIFIGEIS 145 Query: 197 EISND----EDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 ++ ND E D S R + + L R + ++ Sbjct: 146 KLKNDLLTPAKAEAEADDFYS-RMVATVYKGYQQQLVRNQALD 187 >gi|190892554|ref|YP_001979096.1| ATP-dependent DNA helicase II protein [Rhizobium etli CIAT 652] gi|190697833|gb|ACE91918.1| ATP-dependent DNA helicase II protein [Rhizobium etli CIAT 652] Length = 832 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 71/192 (36%), Gaps = 43/192 (22%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D ++ EQ A + V A AG+GKT +L R+ +L A PS +L +T T Sbjct: 60 DYLAGLNPEQTEAVETLEGPVLVLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTN 119 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ G Sbjct: 120 KAAREMKERIALLVGGAVE-------------------------------------GMPW 142 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ ++++ ++S F I D + +LI++ + + LD+ K F Sbjct: 143 LGTFHSIGVKLLRRHAELVGLSSDFTILDTDDVVRLIKQ----LIQAEGLDDKRWPAKQF 198 Query: 193 YEILEISNDEDI 204 +++ ++ + Sbjct: 199 AGMIDTWKNKGL 210 >gi|183984523|ref|YP_001852814.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium marinum M] gi|183177849|gb|ACC42959.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium marinum M] Length = 769 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 85/235 (36%), Gaps = 44/235 (18%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 + + ++ ++ + + ++ + A AGSGKT +L +R+ L+ A +L Sbjct: 7 DADQLLEGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLIAARGVGVGQILA 64 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV+ ++ + Sbjct: 65 ITFTNKAAAEMRERVVSLVGGRAKY----------------------------------- 89 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + V T H+ C I++ + S+F+I D + S++L++ + I + Sbjct: 90 ---MWVSTFHSTCVRILRNQAALIKGLNSNFSIYDADDSRRLLQMIGRDMGLDIKRYSPR 146 Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 L A + D D +SD+ + L ++R++ + Sbjct: 147 LLANAISNLKNELIDPD--RAVSDLSEDSDDLARTVASVYAEYQRRLRAANALDF 199 >gi|318042807|ref|ZP_07974763.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. CB0101] Length = 802 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 78/216 (36%), Gaps = 28/216 (12%) Query: 16 LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 ++ Q A D V A AGSGKT L R+ L+ P+ LL +T T Sbjct: 5 FLAGLNDAQRRAVDHHVGPLLVVAGAGSGKTRALTHRIAHLIGQHGVDPAELLAVTFTNK 64 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ ++ ++ + P + +++ L + Sbjct: 65 AAREMKERLELLLA------QKLAQSQFGQPWSTLPAVEQRQLRSRIYRDVIKD---LWI 115 Query: 134 QTIHAFCEAIMQQFPLEAN--ITS-------HFAIADEEQSKKLIEEAKKSTLASIMLDN 184 T HA +++ + + F+I DE ++ L++E + LD Sbjct: 116 GTFHALFARLLR---FDIDKFRDPEGLTWTRQFSIYDEGDTQSLVKEIVTQ---ELGLDP 169 Query: 185 NEELKKAFYEILEISNDEDI--ETLISDIISNRTAL 218 K + + ++ E L +D R L Sbjct: 170 KRFEPKKVRWAISNAKNQGWIPEQLEADAGGQRGKL 205 >gi|254832504|ref|ZP_05237159.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes 10403S] Length = 733 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E +D ++ ++ + A AGSGKT +L R+ L+ +P +L +T Sbjct: 7 ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 64 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + Sbjct: 65 TNKAAREMKSRIGNLMGGEAE--------------------------------------S 86 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ +F I D +I+ K Sbjct: 87 IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 131 >gi|229028144|ref|ZP_04184286.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1271] gi|228733162|gb|EEL84002.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1271] Length = 751 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 58/168 (34%), Gaps = 40/168 (23%) Query: 10 HSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 S+T L++ +Q A + A AGSGKT +L R+ LL P +L Sbjct: 5 MSKTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLA 64 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ ++ + Sbjct: 65 ITFTNKAAREMRERIDTLVGPEAE------------------------------------ 88 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 --DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|326798725|ref|YP_004316544.1| UvrD/REP helicase [Sphingobacterium sp. 21] gi|326549489|gb|ADZ77874.1| UvrD/REP helicase [Sphingobacterium sp. 21] Length = 1114 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 48/191 (25%), Positives = 84/191 (43%), Gaps = 13/191 (6%) Query: 35 WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L + LL + H S +L +T T A AEM HR+L +I + S Sbjct: 9 ILKASAGSGKTFSLAAHYISLLFTSKVHFSEILAVTFTNKATAEMKHRILTVIEGLALGS 68 Query: 94 D--EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 + E I + + + KA + IL + TI F + I++ F E Sbjct: 69 EAVESYRNIILEAHPQLSRQDIQQKAMEVYRQILHNYSRFAISTIDGFYQKIIRSFSFEL 128 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF-YEILEISNDED------I 204 + + + + E S K+ ++ L ++ D ++ L+ Y +I ND + + Sbjct: 129 GLNAAYRL--EMNSDKVKQDLVVR-LNKLLNDRDDLLQWIINYARKQIENDRNWNYTTVL 185 Query: 205 ETLISDIISNR 215 + L ++ R Sbjct: 186 KKLADELFKER 196 >gi|319892948|ref|YP_004149823.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus pseudintermedius HKU10-03] gi|317162644|gb|ADV06187.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus pseudintermedius HKU10-03] Length = 731 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 75/223 (33%), Gaps = 47/223 (21%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76 + K + + A AGSGKT +L R+ LL + P +L +T T AA Sbjct: 7 NMNKEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV ++ + + + + T Sbjct: 67 EMKERVQALVGEEAEV--------------------------------------IWMSTF 88 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+ C I+++ I +F I D K +I++ K + E + EI Sbjct: 89 HSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKR---ENIDPKKYEPRIFIGEIS 145 Query: 197 EISND----EDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 ++ ND E D S R + + L R + ++ Sbjct: 146 KLKNDLLTPAKAEAEADDFYS-RMVATVYKGYQQQLVRNQALD 187 >gi|228919227|ref|ZP_04082597.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840334|gb|EEM85605.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 753 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|220906933|ref|YP_002482244.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7425] gi|219863544|gb|ACL43883.1| ATP-dependent DNA helicase PcrA [Cyanothece sp. PCC 7425] Length = 797 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 69/169 (40%), Gaps = 18/169 (10%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76 S S++ V A AGSGKT L R+ L+L + P +L +T T AA Sbjct: 10 SLNPSQRQAVKHYCGPLLVVAGAGSGKTRALTYRIANLVLTHRIAPENILAVTFTNKAAR 69 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ ++ L S K + ++ + TI+ L + T Sbjct: 70 EMKERIKKLFAEQQALQQYGQSIASLKPFERNRLET------QVYKTIIRD---LWIGTF 120 Query: 137 HAFCEAIMQQFPLEANIT-------SHFAIADEEQSKKLIEEAKKSTLA 178 H+ C I++ F +E S+F+I DE + LI++ + L Sbjct: 121 HSLCARILR-FEIEKYRDSKGRQWQSNFSIFDESDVQSLIKDIVVNQLQ 168 >gi|260576875|ref|ZP_05844858.1| UvrD/REP helicase [Rhodobacter sp. SW2] gi|259020912|gb|EEW24225.1| UvrD/REP helicase [Rhodobacter sp. SW2] Length = 850 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 44/191 (23%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 + EQ A P + A AG+GKT L R++ LL A P+ +L +T T Sbjct: 28 YLDDLNPEQRAAVLAPDGPVLMLAGAGTGKTKALTARIVHLLTTGKARPNEILAVTFTNK 87 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++ + + Sbjct: 88 AAREMKDRVGRMLGQVEGMP--------------------------------------WM 109 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ I+++ + S+F I D + +L+++ + + +D + Sbjct: 110 GTFHSISVKILRRHAELVGLKSNFTILDTDDQIRLLKQ----LIVAENIDEKRWPARLLA 165 Query: 194 EILEISNDEDI 204 +++ + Sbjct: 166 GLIDSWKNRAW 176 >gi|218231540|ref|YP_002365134.1| ATP-dependent DNA helicase PcrA [Bacillus cereus B4264] gi|218159497|gb|ACK59489.1| ATP-dependent DNA helicase PcrA [Bacillus cereus B4264] Length = 753 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|206974372|ref|ZP_03235289.1| ATP-dependent DNA helicase PcrA [Bacillus cereus H3081.97] gi|217957863|ref|YP_002336407.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH187] gi|206747612|gb|EDZ59002.1| ATP-dependent DNA helicase PcrA [Bacillus cereus H3081.97] gi|217067002|gb|ACJ81252.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH187] Length = 751 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|297564148|ref|YP_003683121.1| ATP-dependent DNA helicase PcrA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848597|gb|ADH70615.1| ATP-dependent DNA helicase PcrA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 781 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 53/155 (34%), Gaps = 38/155 (24%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 ++ + + A AGSGKT +L R+ L+ A P +L +T T AAAEM R Sbjct: 15 QRDAVTHSGSPLLIVAGAGSGKTRVLTHRIAHLMAARGVRPGEILAITFTNKAAAEMRER 74 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + ++ + + T H+ C Sbjct: 75 IQALLG-------------------------------------VRAANSMWTMTFHSACV 97 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 I+++ S F I D S +L++ K Sbjct: 98 RILRREAARLGYPSSFTIYDSADSARLMQLVCKEM 132 >gi|52144943|ref|YP_081887.1| ATP-dependent DNA helicase [Bacillus cereus E33L] gi|229154058|ref|ZP_04282183.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 4342] gi|51978412|gb|AAU19962.1| ATP-dependent DNA helicase [Bacillus cereus E33L] gi|228629338|gb|EEK86040.1| ATP-dependent DNA helicase pcrA [Bacillus cereus ATCC 4342] Length = 751 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|169335318|ref|ZP_02862511.1| hypothetical protein ANASTE_01730 [Anaerofustis stercorihominis DSM 17244] gi|169258056|gb|EDS72022.1| hypothetical protein ANASTE_01730 [Anaerofustis stercorihominis DSM 17244] Length = 741 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 65/167 (38%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 + + ++++ + E + D + A AGSGKT ++ R+ ++ A P +L LT Sbjct: 1 MDLLSMLNEKQQEAVTCVD--GPLLILAGAGSGKTRTIIHRIAYIIENGYAKPWEILALT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ + ++ Sbjct: 59 FTNKAAGEMRERIDSMGIPFT--------------------------------------S 80 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T H+ C I++ TS+F+I D++ +K++++ K Sbjct: 81 DIWMGTFHSICARILRIEGHNLGFTSNFSIYDDDDTKRVVKSILKDL 127 >gi|89055268|ref|YP_510719.1| ATP-dependent DNA helicase Rep [Jannaschia sp. CCS1] gi|88864817|gb|ABD55694.1| ATP-dependent DNA helicase, Rep family [Jannaschia sp. CCS1] Length = 817 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 + Q+ A + + A AG+GKT L R+ L+ A P+ +L +T T Sbjct: 30 YMDGLNPAQIAAVNQLDGPVLMLAGAGTGKTRALTARIAHLMSTGTARPNEILAVTFTNK 89 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++ + G + Sbjct: 90 AAREMKTRVGHLLGQPAE-------------------------------------GMPWL 112 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T HA C ++++ A + S+F I D + +L+++ + + +D+ +A Sbjct: 113 GTFHAICVKLLRRHAELAGLKSNFTILDTDDQTRLMKQ----LIIAEEIDDKRWPARALG 168 Query: 194 EILEISNDEDI 204 I++ + + Sbjct: 169 SIIDGWKNRAL 179 >gi|212638095|ref|YP_002314615.1| ATP-dependent DNA helicase PcrA [Anoxybacillus flavithermus WK1] gi|212559575|gb|ACJ32630.1| ATP-dependent DNA helicase PcrA [Anoxybacillus flavithermus WK1] Length = 726 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 45/191 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++ +++ + E + ++ + A AGSGKT +L R+ L+ P +L +T T Sbjct: 13 LLEGLNEKQKEAVKTTE--GPLLIMAGAGSGKTRVLTHRIAYLMAEKGVAPWNILAITFT 70 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV I+ + + Sbjct: 71 NKAAREMKERVERIVGKQAE--------------------------------------DI 92 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C I+++ I ++F+I D ++ K L +D + +A Sbjct: 93 WISTFHSMCVRILRRDIDRIGIHANFSILDPTDQLSVL----KHILKDRNIDPKKYDPRA 148 Query: 192 FYEILEISNDE 202 + + ++ Sbjct: 149 LLGAISSAKND 159 >gi|315660158|ref|ZP_07913015.1| ATP-dependent DNA helicase PcrA [Staphylococcus lugdunensis M23590] gi|315494839|gb|EFU83177.1| ATP-dependent DNA helicase PcrA [Staphylococcus lugdunensis M23590] Length = 730 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 67/189 (35%), Gaps = 44/189 (23%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ EQ A + A AGSGKT +L R+ LL P +L +T T Sbjct: 4 LVANMNDEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLNEKGVSPYNILAITFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ + + + + Sbjct: 64 AAKEMKQRVEQLVGEEASV--------------------------------------IWM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ C I+++ I +F I D K +I K L + +D+ + + F Sbjct: 86 STFHSMCVKILRRDADRIGIERNFTIIDPTDQKSVI----KDVLKNENIDSKKFEPRMFI 141 Query: 194 EILEISNDE 202 + +E Sbjct: 142 SAISNLKNE 150 >gi|260494743|ref|ZP_05814873.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_33] gi|260197905|gb|EEW95422.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_33] Length = 737 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 41/166 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 + ++ ++ + E AS S + A AGSGKT + R+ ++ P ++L + Sbjct: 2 NLNLLEKLNDKQRE--AASQIDGSILILAGAGSGKTRTITYRIAHMIENVGISPYSILAV 59 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV E++ + Sbjct: 60 TFTNKAAKEMRERVEELVGDIAKAC----------------------------------- 84 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + T H+F +++ + E S+F I D + K++++ K Sbjct: 85 ---TISTFHSFGMRLLRMYGKEVGYNSNFTIYDTDDQKRIVKAILK 127 >gi|253680774|ref|ZP_04861577.1| helicase, UvrD/Rep family [Clostridium botulinum D str. 1873] gi|253562623|gb|EES92069.1| helicase, UvrD/Rep family [Clostridium botulinum D str. 1873] Length = 761 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHT 71 +DL S EQ A+ V A AGSGKT +L R+ ++ P +L +T T Sbjct: 1 MDLKSLLNKEQYKAATAIEGPVLVLAGAGSGKTRVLTYRIAHMIEDLGIPQYNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++++ + + Sbjct: 61 NKAAGEMKDRIKKLVS--------------------------------------NSIDSM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + + +FAI D K L+++ K Sbjct: 83 WVSTFHSCCVRILRREIDKLGYSKNFAIYDSSDQKNLVKQCMKEL 127 >gi|238060999|ref|ZP_04605708.1| ATP-dependent DNA helicase pcrA [Micromonospora sp. ATCC 39149] gi|237882810|gb|EEP71638.1| ATP-dependent DNA helicase pcrA [Micromonospora sp. ATCC 39149] Length = 799 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 60/155 (38%), Gaps = 39/155 (25%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 ++ + A AGSGKT +L R+ LL A + HP ++ +T T AA EM R Sbjct: 43 QRDAVVHAGSPLLIVAGAGSGKTRVLTHRIAYLLAARDVHPGEIIAITFTNKAAGEMKER 102 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V +++ + L + V T H+ C Sbjct: 103 VTQLVGPRARL--------------------------------------MWVSTFHSACV 124 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 I++ A + S F+I D + S++L++ + Sbjct: 125 RILRAEHEHAGLKSSFSIYDADDSRRLMQLVAREL 159 >gi|149916945|ref|ZP_01905446.1| ATP-dependent DNA helicase, UvrD/REP family protein [Plesiocystis pacifica SIR-1] gi|149822223|gb|EDM81614.1| ATP-dependent DNA helicase, UvrD/REP family protein [Plesiocystis pacifica SIR-1] Length = 1027 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 16/193 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLCLTHTKAAAAEMSHR 81 + ++A AG+GKTH LV L L A P+ + +T T+ AA E+ R Sbjct: 24 DANLVLAAGAGAGKTHALVTVALGLYAGTPGEAGGRAPLEPTEVWAVTFTEKAARELRQR 83 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 ++ +A + + L+ E + + + R +L + P + T H+ C Sbjct: 84 IVARASALARDPEGALADEPELVAMLGDARPSAGRWRAILEQLPLAP----IGTFHSLCA 139 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 +++ + +EA + F + +E + +L++ L + D + + A + Sbjct: 140 QVLRSYAVEAGVDPSFEVLEENGAAELLDGVLDEVLLRELEDPDSHTRAAARAL---GGP 196 Query: 202 EDIETLISDIISN 214 E + T + + + Sbjct: 197 EQLRTALRRLHAK 209 >gi|30018548|ref|NP_830179.1| DNA helicase II [Bacillus cereus ATCC 14579] gi|229042192|ref|ZP_04189946.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH676] gi|229107966|ref|ZP_04237593.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-15] gi|229125791|ref|ZP_04254817.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-Cer4] gi|229143089|ref|ZP_04271522.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST24] gi|229148694|ref|ZP_04276944.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1550] gi|29894089|gb|AAP07380.1| DNA helicase II [Bacillus cereus ATCC 14579] gi|228634702|gb|EEK91281.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1550] gi|228640362|gb|EEK96759.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST24] gi|228657648|gb|EEL13460.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-Cer4] gi|228675469|gb|EEL30686.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock1-15] gi|228727127|gb|EEL78330.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH676] Length = 753 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|229089419|ref|ZP_04220690.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-42] gi|228693896|gb|EEL47588.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-42] Length = 751 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|227548288|ref|ZP_03978337.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM 44291] gi|227079606|gb|EEI17569.1| ATP-dependent DNA helicase [Corynebacterium lipophiloflavum DSM 44291] Length = 764 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 41/164 (25%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 DL+ +Q A + A AGSGKT +L +R+ LL A P +L +T T Sbjct: 4 DLVLGLNPQQEAAVKHSGGPLLIVAGAGSGKTAVLTRRIAYLLQERAVAPWQILAITFTN 63 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV ++ + + Sbjct: 64 KAAAEMKERVANLVGPEAQ--------------------------------------RMW 85 Query: 133 VQTIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKS 175 V T H+ C I++Q L A + ++F+I D + S++L+ K Sbjct: 86 VATFHSVCVRILRQQAQLVAGLNTNFSIYDSDDSRRLLSMIAKD 129 >gi|196045338|ref|ZP_03112570.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB108] gi|196023922|gb|EDX62597.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB108] Length = 753 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|118476054|ref|YP_893205.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis str. Al Hakam] gi|118415279|gb|ABK83698.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis str. Al Hakam] Length = 753 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|75759917|ref|ZP_00739988.1| DNA helicase II [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218895412|ref|YP_002443823.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9842] gi|74492584|gb|EAO55729.1| DNA helicase II [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218541975|gb|ACK94369.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9842] Length = 753 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|294790788|ref|ZP_06755946.1| ATP-dependent DNA helicase PcrA [Scardovia inopinata F0304] gi|294458685|gb|EFG27038.1| ATP-dependent DNA helicase PcrA [Scardovia inopinata F0304] Length = 885 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++ ++Q ++E + P + A AGSGKT +L +R+ L A+PS +L +T T Sbjct: 37 LLEGLNQQQAEAVRYQGPA--LLIGAGAGSGKTRVLTRRIAWALSQWGAYPSQILAITFT 94 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ + + Sbjct: 95 NKAAREMKERLATLVGPVA--------------------------------------DRM 116 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + + S F+I D ++L++ + Sbjct: 117 WVSTFHSACVRILRRHGKDIGLQSGFSIYDTADCQRLVKLICQDL 161 >gi|119717815|ref|YP_924780.1| ATP-dependent DNA helicase PcrA [Nocardioides sp. JS614] gi|119538476|gb|ABL83093.1| ATP-dependent DNA helicase PcrA [Nocardioides sp. JS614] Length = 797 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 48/232 (20%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E ++ +++ ++ V A AGSGKT +L +R+ L+ AHP ++L +T Sbjct: 21 ELLEGLNE--PQRAAVVHEGAPLLVVAGAGSGKTRVLTRRIAWLISERKAHPGSILAITF 78 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV +++ + + Sbjct: 79 TNKAAAEMKERVEDLVGRRARI-------------------------------------- 100 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + V T H+ C I+++ + S+F+I D K+L+ + + Sbjct: 101 MWVSTFHSACVRILRKEVDKLGFKSNFSIYDAADQKRLMTLVCNDL---DLDPKRYQPGA 157 Query: 191 AFYEILEISND-EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 + + N+ D + D R L+ + ++R++ + + Sbjct: 158 LLHWVSNQKNELRDPDEATKDA---RNHLEETYAAAYTTYQRRLRQANALDF 206 >gi|240142707|ref|YP_002967220.1| putative helicase (ATP-dependent exodeoxyribonuclease, subunit A) [Methylobacterium extorquens AM1] gi|240012654|gb|ACS43879.1| putative helicase (ATP-dependent exodeoxyribonuclease, subunit A) [Methylobacterium extorquens AM1] Length = 1116 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 68/160 (42%), Gaps = 7/160 (4%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 RS V A AGSGKT ++ R+ +L + P + ++ T+ AA+E+ RV +++ Sbjct: 22 ERSMIVEAGAGSGKTALMSGRIALMLASGVAPGAIAAVSFTELAASELLERVGDVVAR-- 79 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 +L E+ + L L TIH FC+ +++ +P+E Sbjct: 80 -----LLDGEVPEELRLALPHGLSPLQGANLAEAEARLDELVCTTIHGFCQRLVKPYPVE 134 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 A+I +ADE ++ + + L + + + Sbjct: 135 ADIDPGARVADEAEADGIFRDLLDEWLRECLSGGGSLVAE 174 >gi|89901806|ref|YP_524277.1| UvrD/REP helicase [Rhodoferax ferrireducens T118] gi|89346543|gb|ABD70746.1| ATP-dependent DNA helicase UvrD [Rhodoferax ferrireducens T118] Length = 814 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 79/236 (33%), Gaps = 47/236 (19%) Query: 5 NSFQEHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61 ++ + S DL+ Q ++ + P A + A AGSGKT +L R+ LL Sbjct: 15 SAITQQSPPDDLLLQHLNPEQRAAVTLPAEHALILAGAGSGKTRVLTTRIAWLLQTGQVT 74 Query: 62 PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121 P +L +T T AA EM R+ ++ Sbjct: 75 PGGVLAVTFTNKAAKEMMTRLSSMLPV--------------------------------- 101 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 G+ + T H C ++ AN+ F I D + I+ K Sbjct: 102 -----NVRGMWIGTFHGLCNRFLRAHFKLANLPQSFQILDTQDQLSSIKRLYKQF----G 152 Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDIISN--RTALKLIFFFFSYLWRRKIIE 235 +D+ K + ++ + + ++ R +++ + R +++ Sbjct: 153 IDDERFPPKQMQWFIGGCKEDGLRPNMVEVRDEETRKKVEIYQLYEDQCQREGVVD 208 >gi|297242864|ref|ZP_06926802.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis AMD] gi|296889075|gb|EFH27809.1| superfamily I DNA and RNA helicase [Gardnerella vaginalis AMD] Length = 981 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 67/175 (38%), Gaps = 41/175 (23%) Query: 3 YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAH 61 + + + +D ++ +S+ + P + A AGSGKT +L +R+ +L A Sbjct: 96 HSRVAVDAQKLLDGLNSQQSQAVQYDGPA--LLIGAGAGSGKTRVLTRRIAWILSQKGAW 153 Query: 62 PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121 PS +L +T T AAAEM R+ +I + + Sbjct: 154 PSQILAITFTNKAAAEMRERLSNLIGSEA------------------------------- 182 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ + S F+I D ++L++ Sbjct: 183 -------NTMWVSTFHSACVKILRRSGQYIGLKSGFSIYDTSDCERLVKIIATEL 230 >gi|196040164|ref|ZP_03107466.1| ATP-dependent DNA helicase PcrA [Bacillus cereus NVH0597-99] gi|196029019|gb|EDX67624.1| ATP-dependent DNA helicase PcrA [Bacillus cereus NVH0597-99] Length = 751 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|196034734|ref|ZP_03102142.1| ATP-dependent DNA helicase PcrA [Bacillus cereus W] gi|218901494|ref|YP_002449328.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH820] gi|228925549|ref|ZP_04088638.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944101|ref|ZP_04106480.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195992777|gb|EDX56737.1| ATP-dependent DNA helicase PcrA [Bacillus cereus W] gi|218539393|gb|ACK91791.1| ATP-dependent DNA helicase PcrA [Bacillus cereus AH820] gi|228815490|gb|EEM61732.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228834027|gb|EEM79575.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 751 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|149004237|ref|ZP_01829024.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS69] gi|147757787|gb|EDK64800.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS69] Length = 1421 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 84/222 (37%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++V+R+L L S L T T AA E+ Sbjct: 234 TAEQIEAIYTSGQNILVSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELK 293 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 294 ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 334 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L+E + + + + K++F +L Sbjct: 335 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKESFSHLLKN 391 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 E + K+ F S +K + +S Sbjct: 392 FVGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 428 >gi|156740410|ref|YP_001430539.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941] gi|156231738|gb|ABU56521.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941] Length = 759 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 72/198 (36%), Gaps = 44/198 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D ++ + + + A+ V A GSGKT +L +RV L+ + P +L Sbjct: 3 DASTILDGLNPAQRQAVTAA--PGPVLVLAGPGSGKTRVLTRRVAYLIGVHGVDPHHILA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ +++ Sbjct: 61 VTFTNKAAREMRDRLEKLLGPGE------------------------------------- 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 L V T H+ C +++ + FAI D + + K L + LD + Sbjct: 84 AAALTVGTFHSICARFLRRDSIHLGRERDFAIYDTDDQLR----VMKRVLRDLNLDEKKH 139 Query: 188 LKKAFYEILEISNDEDIE 205 +A + + + +E I+ Sbjct: 140 APRAIHAAISRAKNELID 157 >gi|49479079|ref|YP_034625.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|225862343|ref|YP_002747721.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB102] gi|49330635|gb|AAT61281.1| ATP-dependent DNA helicase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|225788890|gb|ACO29107.1| ATP-dependent DNA helicase PcrA [Bacillus cereus 03BB102] Length = 753 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|148544658|ref|YP_001272028.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri DSM 20016] gi|184154011|ref|YP_001842352.1| ATP-dependent DNA helicase [Lactobacillus reuteri JCM 1112] gi|227363781|ref|ZP_03847888.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM2-3] gi|325682992|ref|ZP_08162508.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM4-1A] gi|148531692|gb|ABQ83691.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri DSM 20016] gi|183225355|dbj|BAG25872.1| ATP-dependent DNA helicase [Lactobacillus reuteri JCM 1112] gi|227071138|gb|EEI09454.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM2-3] gi|324977342|gb|EGC14293.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri MM4-1A] Length = 757 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++ ++ +SE +L ++ V A AGSGKT +L RV L+ P +L +T T Sbjct: 7 LLEGMNDKQSEAVLTTE--GPLLVMAGAGSGKTRVLTHRVAYLIEENGVLPWNILAITFT 64 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +++ E+ + Sbjct: 65 NKAAREMKERVGKLLG--------------------------------------ESANEI 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HA C I+++ + F IAD + + L++ Sbjct: 87 WVSTFHALCVRILRRDIEKIGYNRAFTIADTSEQRTLMKRICAEL 131 >gi|228906067|ref|ZP_04069956.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 200] gi|228853476|gb|EEM98244.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 200] Length = 753 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|297184355|gb|ADI20471.1| superfamily I DNA and RNA helicases [uncultured alpha proteobacterium EB080_L58F04] Length = 781 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 69/197 (35%), Gaps = 44/197 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 S +D ++ + + A D + A AG+GKT L R+ LL A P +L Sbjct: 23 RSSPYLDQLNPAQRAAVEALD--GPVLMLAGAGTGKTKALTCRIAHLLTTGRARPHEILS 80 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV E++ Sbjct: 81 VTFTNKAAREMKSRVAELLRQSVE------------------------------------ 104 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + T H+ C ++++ + S F I D + +L+++ L + +D+ Sbjct: 105 -GMPWMGTFHSICVKLLRRHAELVGLKSSFTILDTDDQIRLLKQ----LLVASDVDDKRW 159 Query: 188 LKKAFYEILEISNDEDI 204 + I++ + Sbjct: 160 PARQLAGIIDQWKNRAW 176 >gi|227543585|ref|ZP_03973634.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri CF48-3A] gi|300909386|ref|ZP_07126847.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri SD2112] gi|227186425|gb|EEI66496.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri CF48-3A] gi|300893251|gb|EFK86610.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri SD2112] Length = 757 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++ ++ +SE +L ++ V A AGSGKT +L RV L+ P +L +T T Sbjct: 7 LLEGMNDKQSEAVLTTE--GPLLVMAGAGSGKTRVLTHRVAYLIEENGVLPWNILAITFT 64 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +++ E+ + Sbjct: 65 NKAAREMKERVGKLLG--------------------------------------ESANEI 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HA C I+++ + F IAD + + L++ Sbjct: 87 WVSTFHALCVRILRRDIEKIGYNRAFTIADTSEQRTLMKRICAEL 131 >gi|183601527|ref|ZP_02962897.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp. lactis HN019] gi|241190974|ref|YP_002968368.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196380|ref|YP_002969935.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219133|gb|EDT89774.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp. lactis HN019] gi|240249366|gb|ACS46306.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250934|gb|ACS47873.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793963|gb|ADG33498.1| Superfamily I DNA and RNA helicase [Bifidobacterium animalis subsp. lactis V9] Length = 939 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 60/164 (36%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +LI +Q A + A AGSGKT +L +R+ +L A PS +L +T T Sbjct: 46 ELIGDLNEQQAQAVQYRGPALLIGAGAGSGKTRVLTRRIAWILTQFGAWPSQVLAITFTN 105 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ +I + + Sbjct: 106 KAAAEMRERLGALIGGVA--------------------------------------DRMW 127 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + + S F I D ++LI+ Sbjct: 128 VSTFHSACVRILRRDGEQIGLKSGFTIYDTADCERLIKLVCADF 171 >gi|289766345|ref|ZP_06525723.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D11] gi|289717900|gb|EFD81912.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D11] Length = 735 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 41/165 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 ++ ++ + E AS S + A AGSGKT + R+ ++ P ++L +T Sbjct: 1 MNLLEKLNDKQRE--AASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV E++ + Sbjct: 59 FTNKAAKEMRERVEELVGDIAKAC------------------------------------ 82 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + T H+F +++ + E S+F I D + K++++ K Sbjct: 83 --TISTFHSFGMRLLRMYGKEVGYNSNFTIYDTDDQKRIVKAILK 125 >gi|126728959|ref|ZP_01744774.1| DNA helicase II, putative [Sagittula stellata E-37] gi|126710889|gb|EBA09940.1| DNA helicase II, putative [Sagittula stellata E-37] Length = 827 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 73/195 (37%), Gaps = 44/195 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 + +D ++ + E + D + A AG+GKT L RV+ LL A P+ +L +T Sbjct: 25 NPYLDELNPAQREAVEHLD--GPVLMLAGAGTGKTKALTARVVHLLNTGRARPNEILSVT 82 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV +++ G Sbjct: 83 FTNKAAREMKTRVGKVLGQVVE-------------------------------------G 105 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + T H+ C ++++ + S+F I D + +L+++ + + +D+ Sbjct: 106 MPWMGTFHSICVKLLRRHAELVGLKSNFTILDTDDQLRLLKQLVQ----AHGIDDKRWPA 161 Query: 190 KAFYEILEISNDEDI 204 + I++ + + Sbjct: 162 RQLANIIDGWKNRAL 176 >gi|322389861|ref|ZP_08063402.1| exonuclease RexA [Streptococcus parasanguinis ATCC 903] gi|321143442|gb|EFX38879.1| exonuclease RexA [Streptococcus parasanguinis ATCC 903] Length = 1221 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 78/219 (35%), Gaps = 29/219 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++VQR+L + L T T AA E+ Sbjct: 29 TPEQIDAIYSSGTNILVSASAGSGKTFVMVQRILDQMQRGISIKELFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + SD+ + + L + + T+ +F Sbjct: 89 ERLESELGKALQASDDP-------------------ELKQHLARQIADVATSDIGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-E 197 + ++ ++ + F I + + L E ++ N+E AF +++ Sbjct: 130 TQKVLTRYGYLLGLAPQFRILQNASEQRLLQNEVFQAVFDRYYQGENQE---AFVQMVKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + TL + I ++ F S K +E+ Sbjct: 187 FTGQRKNLTLFKEQI-----YQIYDFLQSTSDPEKWLEE 220 >gi|256028421|ref|ZP_05442255.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D11] Length = 737 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 41/166 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 + ++ ++ + E AS S + A AGSGKT + R+ ++ P ++L + Sbjct: 2 NLNLLEKLNDKQRE--AASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAV 59 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV E++ + Sbjct: 60 TFTNKAAKEMRERVEELVGDIAKAC----------------------------------- 84 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + T H+F +++ + E S+F I D + K++++ K Sbjct: 85 ---TISTFHSFGMRLLRMYGKEVGYNSNFTIYDTDDQKRIVKAILK 127 >gi|163738701|ref|ZP_02146115.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107] gi|161388029|gb|EDQ12384.1| UvrD/REP helicase [Phaeobacter gallaeciensis BS107] Length = 787 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 70/193 (36%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ + + + + A AG+GKT L R++ LL A P+ +L +T T Sbjct: 27 YLDGLNPAQRAAVECLE--GPVLMLAGAGTGKTKALTARIVHLLTTGTAKPNEILAVTFT 84 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ G Sbjct: 85 NKAAREMKERVAGMLGQAVE-------------------------------------GMP 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C ++++ + S+F I D + +L+++ + + +D+ + Sbjct: 108 WLGTFHSICVKLLRRHAELVGLKSNFTILDADDQIRLLKQ----LIKAEGIDDKRWPARM 163 Query: 192 FYEILEISNDEDI 204 +++ + + Sbjct: 164 LAGVIDDWKNRAL 176 >gi|295688867|ref|YP_003592560.1| UvrD/REP helicase [Caulobacter segnis ATCC 21756] gi|295430770|gb|ADG09942.1| UvrD/REP helicase [Caulobacter segnis ATCC 21756] Length = 806 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 68/193 (35%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ ++ V A AG+GKT +L R+ +L A P LL +T T Sbjct: 39 YLDGLN--PEQREAVETTEGPLLVLAGAGTGKTRVLTTRLAHILATGRARPWELLAVTFT 96 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ II P + Sbjct: 97 NKAAREMRERITHIIG---------------------PEAEGLR---------------- 119 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ I+++ + S++ I D + ++L+++ + + +D + Sbjct: 120 WLGTFHSVAAQILRRHAELIGLKSNYTIIDTDDQERLLKQ----LIEAENIDAKRWTPRI 175 Query: 192 FYEILEISNDEDI 204 +I++ + Sbjct: 176 LSQIIDGWKNRGW 188 >gi|294614140|ref|ZP_06694061.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1636] gi|291592990|gb|EFF24578.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1636] Length = 745 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 +E ++ ++ + E +L +D + A AGSGKT +L R+ L+ +P +L +T Sbjct: 5 AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV I+ + Sbjct: 63 FTNKAAKEMKERVNAILVSGGE-------------------------------------- 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ +F I D + L++ K Sbjct: 85 DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 131 >gi|311114987|ref|YP_003986208.1| ATP-dependent DNA helicase PcrA [Gardnerella vaginalis ATCC 14019] gi|310946481|gb|ADP39185.1| ATP-dependent DNA helicase PcrA [Gardnerella vaginalis ATCC 14019] Length = 964 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++ ++ +S+ + + P + A AGSGKT +L +R+ +L A PS +L +T T Sbjct: 100 LLEGLNPQQSKAVQYTGPA--LLIGAGAGSGKTRVLTRRIAWILANRKAWPSQILAITFT 157 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM R+ +I + + Sbjct: 158 NKAAAEMRERLASLIG--------------------------------------NSANSM 179 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I++ + S F+I D ++L++ Sbjct: 180 WVSTFHSACVKILRAHGDSIGLKSGFSIYDSSDCERLVKIIASEL 224 >gi|150015241|ref|YP_001307495.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052] gi|149901706|gb|ABR32539.1| UvrD/REP helicase [Clostridium beijerinckii NCIMB 8052] Length = 755 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL S EQ A+ + A AGSGKT +L R+ ++ + P ++L +T T Sbjct: 1 MDLKSLLNKEQYEGATTIDGQVLILAGAGSGKTRVLTHRMAHMIEDLDIAPYSILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +I + + Sbjct: 61 NKAAKEMKDRVKALIGERAE--------------------------------------NM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ + S F I D K L++E K+ Sbjct: 83 WISTFHSTCVRILRREIDKIGYKSSFTIYDSSDQKTLVKECMKTL 127 >gi|308235914|ref|ZP_07666651.1| putative ATP-dependent DNA helicase PcrA [Gardnerella vaginalis ATCC 14018] Length = 956 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++ ++ +S+ + + P + A AGSGKT +L +R+ +L A PS +L +T T Sbjct: 92 LLEGLNPQQSKAVQYTGPA--LLIGAGAGSGKTRVLTRRIAWILANRKAWPSQILAITFT 149 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM R+ +I + + Sbjct: 150 NKAAAEMRERLASLIG--------------------------------------NSANSM 171 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I++ + S F+I D ++L++ Sbjct: 172 WVSTFHSACVKILRAHGDSIGLKSGFSIYDSSDCERLVKIIASEL 216 >gi|293557128|ref|ZP_06675682.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1039] gi|291600697|gb|EFF30995.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1039] Length = 745 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 +E ++ ++ + E +L +D + A AGSGKT +L R+ L+ +P +L +T Sbjct: 5 AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV I+ + Sbjct: 63 FTNKAAKEMKERVNAILVSGGE-------------------------------------- 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ +F I D + L++ K Sbjct: 85 DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 131 >gi|229194679|ref|ZP_04321472.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1293] gi|228588782|gb|EEK46807.1| ATP-dependent DNA helicase pcrA [Bacillus cereus m1293] Length = 753 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|324999173|ref|ZP_08120285.1| ATP-dependent DNA helicase PcrA [Pseudonocardia sp. P1] Length = 829 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 93/258 (36%), Gaps = 73/258 (28%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 + ++ ++ + E + + A AGSGKT +L R+ LL HP ++ +T Sbjct: 27 QLLEGLNDRQRE--AVTHAGSPLLIVAGAGSGKTRVLTHRIGWLLAERGVHPGEIMSITF 84 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV ++ S G Sbjct: 85 TNKAAAEMKERVDGLVGRRS--------------------------------------GP 106 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-------------- 176 + V T H+ C I+++ + S F++ D + S++L+ + Sbjct: 107 MWVSTFHSMCVRILRREAKHLGVRSAFSVYDADDSRRLVGIVGRDLELDPKKFAPRALAA 166 Query: 177 ----LASIMLDNNEELKKA--------------FYEILEISNDEDIETLISDIISNRTAL 218 L + +L ++ ++A + L +N D + LI + +S + Sbjct: 167 QISNLKNELLSPDDAAERAGTDHERRIAEVYGVYQSRLRQANAFDFDDLIMETVSLLDRM 226 Query: 219 KLIFFFFSYLWRRKIIEK 236 + ++ +R ++++ Sbjct: 227 PAVAEYYRRRFRHVLVDE 244 >gi|270291088|ref|ZP_06197311.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici 7_4] gi|270280484|gb|EFA26319.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici 7_4] Length = 757 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 67/190 (35%), Gaps = 45/190 (23%) Query: 15 DLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL+ +Q + A AGSGKT +L RV L+ + +P +L +T T Sbjct: 5 DLLKGLNDMQQQAVQTTEGPLLIMAGAGSGKTRVLTHRVAYLIEEKDVNPWNILAITFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + + Sbjct: 65 KAAREMRERVANLLGEVA--------------------------------------SEIW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN-EELKKA 191 V T HA C I+++ + F+IAD + + LI K LA + D + + Sbjct: 87 VSTFHALCVRILRRDIEQIGYNRAFSIADPSEQRTLI----KHVLADLNYDPKVYDPRSV 142 Query: 192 FYEILEISND 201 +I ND Sbjct: 143 LGKISNAKND 152 >gi|229021877|ref|ZP_04178447.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1272] gi|228739423|gb|EEL89849.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH1272] Length = 747 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L +Q + A AGSGKT +L R+ LL P +L +T T A Sbjct: 8 LNGLNPEQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ + + + Sbjct: 68 AREMRERIDTLVGPEAE--------------------------------------DIWIS 89 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D ++++ K Sbjct: 90 TFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130 >gi|229171137|ref|ZP_04298731.1| ATP-dependent DNA helicase pcrA [Bacillus cereus MM3] gi|228612315|gb|EEK69543.1| ATP-dependent DNA helicase pcrA [Bacillus cereus MM3] Length = 753 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 58/168 (34%), Gaps = 40/168 (23%) Query: 10 HSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 S+T L++ +Q A + A AGSGKT +L R+ LL P +L Sbjct: 5 MSKTDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLA 64 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ ++ + Sbjct: 65 ITFTNKAAREMRERIDTLVGPEAE------------------------------------ 88 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 --DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|323341292|ref|ZP_08081537.1| ATP-dependent DNA helicase PcrA [Lactobacillus ruminis ATCC 25644] gi|323091286|gb|EFZ33913.1| ATP-dependent DNA helicase PcrA [Lactobacillus ruminis ATCC 25644] Length = 756 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 75/196 (38%), Gaps = 44/196 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69 ++ ++ ++ + E ++ ++ + A AGSGKT +L RV L+ N +P +L +T Sbjct: 15 NDLLNGMNDKQREAVVCTE--GPLLIMAGAGSGKTRVLTHRVAYLIEHQNVNPWNILAIT 72 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ ++ S Sbjct: 73 FTNKAAREMRERIDRLVEYGSE-------------------------------------- 94 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + V T HA C I+++ + + F I + K L++ TL LD + Sbjct: 95 AVWVSTFHALCVRILRRDAEKVGFSKAFTIGSPSEQKTLMKHIVADTL---NLDTKQYDP 151 Query: 190 KAFYEILEISNDEDIE 205 ++F + +E IE Sbjct: 152 RSFLASISSWKNELIE 167 >gi|194466913|ref|ZP_03072900.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri 100-23] gi|194453949|gb|EDX42846.1| ATP-dependent DNA helicase PcrA [Lactobacillus reuteri 100-23] Length = 757 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++ ++ +SE +L ++ V A AGSGKT +L RV L+ P +L +T T Sbjct: 7 LLEGMNDKQSEAVLTTE--GPLLVMAGAGSGKTRVLTHRVAYLIEENGVLPWNILAITFT 64 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +++ E+ + Sbjct: 65 NKAAREMKERVGKLLG--------------------------------------ESANEI 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HA C I+++ + F IAD + + L++ Sbjct: 87 WVSTFHALCVRILRRDIEKIGYNRAFTIADTSEQRTLMKRICAEL 131 >gi|33239787|ref|NP_874729.1| superfamily I DNA/RNA helicase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237313|gb|AAP99381.1| Superfamily I DNA/RNA helicase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 807 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 17/173 (9%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 I + EQ A D V A AGSGKT L R+ L+ PS +L +T T Sbjct: 5 ITFLDGLNKEQSKAVDHYEGPLLVVAGAGSGKTRALTHRIAHLISEYKVEPSEILAVTFT 64 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ + KI + ++ + + E + Sbjct: 65 NKAAREMKDRLEILLAQKLAKIEFGQPFSTLKISIQSELRTRIYR---------EVIKEI 115 Query: 132 KVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178 + T HA +++ ++ + + T HF+I DE+ + LI+E L Sbjct: 116 WIGTFHALFARLLRFDIEKYVDKEGLKWTRHFSIYDEKDALSLIKEIVTEDLQ 168 >gi|256847800|ref|ZP_05553245.1| ATP-dependent DNA helicase PcrA [Lactobacillus coleohominis 101-4-CHN] gi|256715489|gb|EEU30465.1| ATP-dependent DNA helicase PcrA [Lactobacillus coleohominis 101-4-CHN] Length = 759 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 63/165 (38%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + ++ + E +LA++ V A AGSGKT +L RV L+ N P +L +T T Sbjct: 4 ALAGMNDKQQEAVLATE--GPVLVMAGAGSGKTRVLTHRVAYLIEEKNVLPWHILAITFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +++ ++ + Sbjct: 62 NKAAREMKERIGKLLG--------------------------------------DSANDI 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HA C I+++ + + F IAD + + L++ Sbjct: 84 WVSTFHALCVRILRRDIDKLGFNTAFTIADPGEQRTLMKRICAEL 128 >gi|148554134|ref|YP_001261716.1| ATP-dependent DNA helicase UvrD [Sphingomonas wittichii RW1] gi|148499324|gb|ABQ67578.1| ATP-dependent DNA helicase UvrD [Sphingomonas wittichii RW1] Length = 892 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 63/190 (33%), Gaps = 42/190 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L ++ V A AG+GKT L R+ L+ A PS +L +T T A Sbjct: 146 LRGLNPPQREAVLTTEGPVLVLAGAGTGKTAALTARLAHLVATRRAWPSEILAVTFTNKA 205 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ G + Sbjct: 206 AREMRERVGRLLGQAVE-------------------------------------GMPWLG 228 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ ++++ +T F I D + +L+++ LA+ LD + Sbjct: 229 TFHSVAARMLRRHAELVGLTPSFTILDTDDQLRLLKQ----LLAAADLDEKRWPARQLAG 284 Query: 195 ILEISNDEDI 204 +++ + + Sbjct: 285 LIDRWKNRGL 294 >gi|312867393|ref|ZP_07727602.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis F0405] gi|311097094|gb|EFQ55329.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis F0405] Length = 1221 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 77/219 (35%), Gaps = 29/219 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++VQR+L + L T T AA E+ Sbjct: 29 TPEQIDAIYSSGTNILVSASAGSGKTFVMVQRILDQMQRGISIKELFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + SD+ + + L + + T+ +F Sbjct: 89 ERLESELGKALQASDDP-------------------ELKQHLARQIADVATSDIGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-E 197 + ++ ++ + F I + + L E ++ N+E AF +++ Sbjct: 130 TQKVLTRYGYLLGLAPQFRILQNASEQRLLQNEVFQAVFDRYYQGENQE---AFVQMVKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + TL + ++ F S K +E+ Sbjct: 187 FTGQRKNLTLFKE-----QVYQIYDFLQSTSDPEKWLEE 220 >gi|225174502|ref|ZP_03728501.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1] gi|225170287|gb|EEG79082.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1] Length = 1069 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 20/165 (12%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 + ++ Q + + T + V A AGSGKT LVQR+ L+ + +T T+ AA Sbjct: 6 LQDEQARQAIKTRLTETFLVEAGAGSGKTTSLVQRMTALISTGQCQMENMAAVTFTRKAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ R E + + + + + L T L + T Sbjct: 66 GELRERFQEKLEKEYQSTTDPTT-------------------KQTLETALSQLDRAFIGT 106 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 IH+FC ++++ P+EA ++ F + + K L + A + L + Sbjct: 107 IHSFCSRLLRERPVEAGMSPDFTEIEGLEEKILAQTAWEEYLLEV 151 >gi|296876208|ref|ZP_06900262.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis ATCC 15912] gi|296432919|gb|EFH18712.1| ATP-dependent nuclease subunit A [Streptococcus parasanguinis ATCC 15912] Length = 1221 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 77/219 (35%), Gaps = 29/219 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++VQR+L + L T T AA E+ Sbjct: 29 TPEQIDAIYSSGTNILVSASAGSGKTFVMVQRILDQMQRGISIKELFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + SD+ + + L + + T+ +F Sbjct: 89 ERLESELGKALQASDDP-------------------ELKQHLARQIADVATSDIGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-E 197 + ++ ++ + F I + + L E ++ N+E AF +++ Sbjct: 130 TQKVLTRYGYLLGLAPQFRILQNASEQRLLQNEVFQAVFDRYYQGENQE---AFVQMVKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + TL + ++ F S K +E+ Sbjct: 187 FTGQRKNLTLFKE-----QVYQIYDFLQSTSDPEKWLEE 220 >gi|229176883|ref|ZP_04304279.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 172560W] gi|228606556|gb|EEK63981.1| ATP-dependent DNA helicase pcrA [Bacillus cereus 172560W] Length = 749 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 + ++ ++ +Q + A AGSGKT +L R+ LL P +L +T Sbjct: 6 KLLNGLN--PQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITF 63 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + Sbjct: 64 TNKAAREMRERIDTLVGPEAE--------------------------------------D 85 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 86 IWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130 >gi|149179307|ref|ZP_01857868.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797] gi|148841848|gb|EDL56250.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797] Length = 693 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 61/167 (36%), Gaps = 28/167 (16%) Query: 11 SETIDLISQTK-SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 + DL Q +Q A T + A AG+GKT L RV L+ PS +L LT Sbjct: 6 PQLEDLFKQLNPEQQAAACHDTGPLLIIAGAGTGKTTTLSHRVAYLIAQGIDPSRILLLT 65 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 ++ AA EM RV ++ A S + SA I G Sbjct: 66 FSRRAANEMVRRVDALLRAMSAGRENTASARSRSIWG----------------------- 102 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ +++++ + F I D ++ L+ + Sbjct: 103 ----GTFHSTAARLLRRYGQAIGLPDDFTIIDRSDAEDLMSALRSEL 145 >gi|311067135|ref|YP_003972058.1| ATP-dependent DNA helicase [Bacillus atrophaeus 1942] gi|310867652|gb|ADP31127.1| ATP-dependent DNA helicase [Bacillus atrophaeus 1942] Length = 739 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 41/167 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 ++ + ++ + E + +D + A AGSGKT +L R+ L+ + P +L + Sbjct: 5 SNQLLSGLNPVQQEAVKTTD--GPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAI 62 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV I+ + Sbjct: 63 TFTNKAAREMKERVESILGPGA-------------------------------------- 84 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F+I D +I+ K Sbjct: 85 DDIWISTFHSMCVRILRRDIDRIGINRNFSILDTSDQLSVIKGILKE 131 >gi|291570130|dbj|BAI92402.1| ATP-dependent DNA helicase PcrA [Arthrospira platensis NIES-39] Length = 779 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 23/200 (11%) Query: 11 SETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 E++D ++ Q A + V A AGSGKT L RV L+ + +P +L + Sbjct: 1 MESVDFLTSLNPSQRQAVEHFCGPMLVVAGAGSGKTRALTYRVANLIDNHKVNPENILAV 60 Query: 69 THTKAAAAEMSHRVLEII--TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 T T AA E+ R+ I + LSA IQ + ++ +HL Sbjct: 61 TFTNKAAREIKDRIESIFAQQQAQKKYQKPLSALEPAIQTQLRSQIYRKLTKHL------ 114 Query: 127 TPGGLKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASI 180 + T H+ C I++ ++ E +F+I DE L+++ TL Sbjct: 115 -----WMGTFHSLCARILRYDINKYQDEKGRQWKPNFSIFDESDVLALVKQIVTKTLN-- 167 Query: 181 MLDNNEELKKAFYEILEISN 200 + D + +K Y+I N Sbjct: 168 LDDKKFDPRKTRYKISNAKN 187 >gi|113477645|ref|YP_723706.1| ATP-dependent DNA helicase Rep [Trichodesmium erythraeum IMS101] gi|110168693|gb|ABG53233.1| ATP-dependent DNA helicase, Rep family [Trichodesmium erythraeum IMS101] Length = 781 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 78/194 (40%), Gaps = 19/194 (9%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D ++Q Q A + V A AGSGKT L RV+ L+ + HP +L +T T Sbjct: 5 DFLTQLNLSQRQAVEHFCGPMLVVAGAGSGKTRALTYRVVHLIRHHRVHPENILAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ E A+ K ++ + + I + L Sbjct: 65 KAAQEMKDRIEKVFA------QEQAEAKYNKPFSALTSEEQIRLRSQVYKNITKH---LW 115 Query: 133 VQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 V T H C I++ ++ E +F+I DE ++ LI++ L + D Sbjct: 116 VGTFHNLCARILRFDINKYQDEKKRHWDKNFSIFDESDAQSLIKQIVTKQLN--LDDKKF 173 Query: 187 ELKKAFYEILEISN 200 E + Y I N Sbjct: 174 EPRSVRYAISNAKN 187 >gi|269977462|ref|ZP_06184434.1| ATP-dependent DNA helicase PcrA [Mobiluncus mulieris 28-1] gi|306819108|ref|ZP_07452822.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35239] gi|269934378|gb|EEZ90940.1| ATP-dependent DNA helicase PcrA [Mobiluncus mulieris 28-1] gi|304648084|gb|EFM45395.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35239] Length = 900 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 47/212 (22%), Positives = 74/212 (34%), Gaps = 53/212 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 ++ + P + V A AGSGKT +L +R+ LL P +L +T T AA EM Sbjct: 59 NPAQYQAVTHPGGALLVMAGAGSGKTRVLTRRIAWLLATGRVRPWEILAITFTNKAAGEM 118 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ + + V T H+ Sbjct: 119 RERVETLVGNAAKY--------------------------------------MWVSTFHS 140 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK------------KSTLASIMLDNNE 186 C I++ IT F+I D +K L+ KS A I NE Sbjct: 141 SCVRILRAEAETLGITRSFSIYDTADTKALLTRIIKGRGLDPKRFTPKSFAARISNAKNE 200 Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTAL 218 ++ A E++ + I L ++I + L Sbjct: 201 LVEPA--TFAEMAAPDKISQLTAEIYAEYQQL 230 >gi|227875827|ref|ZP_03993953.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35243] gi|227843575|gb|EEJ53758.1| ATP-dependent DNA helicase [Mobiluncus mulieris ATCC 35243] Length = 900 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 47/212 (22%), Positives = 74/212 (34%), Gaps = 53/212 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 ++ + P + V A AGSGKT +L +R+ LL P +L +T T AA EM Sbjct: 59 NPAQYQAVTHPGGALLVMAGAGSGKTRVLTRRIAWLLATGRVRPWEILAITFTNKAAGEM 118 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ + + V T H+ Sbjct: 119 RERVETLVGNAAKY--------------------------------------MWVSTFHS 140 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK------------KSTLASIMLDNNE 186 C I++ IT F+I D +K L+ KS A I NE Sbjct: 141 SCVRILRAEAETLGITRSFSIYDTADTKALLTRIIKGRGLDPKRFTPKSFAARISNAKNE 200 Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTAL 218 ++ A E++ + I L ++I + L Sbjct: 201 LVEPA--TFAEMAAPDKISQLTAEIYAEYQQL 230 >gi|323705998|ref|ZP_08117568.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium xylanolyticum LX-11] gi|323534612|gb|EGB24393.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacterium xylanolyticum LX-11] Length = 716 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 42/167 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 ++ ++ + E ++ ++ + A AGSGKT +L R+ L+ N P+ ++ +T Sbjct: 1 MNILEGLNDRQKEAVVTTE--GPVLILAGAGSGKTRVLTHRIAYLVREKNVSPANIIAIT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV ++ G Sbjct: 59 FTNKAAKEMKDRVESLLGYV---------------------------------------G 79 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L V T H+ C I+++ + +F I D + K LI + K Sbjct: 80 DLWVSTFHSACVRILRRDIEKIGYDRNFVIYDTQDQKTLISDCIKEL 126 >gi|229495094|ref|ZP_04388840.1| ATP-dependent DNA helicase PcrA [Rhodococcus erythropolis SK121] gi|229318025|gb|EEN83900.1| ATP-dependent DNA helicase PcrA [Rhodococcus erythropolis SK121] Length = 830 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 94/261 (36%), Gaps = 77/261 (29%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++ ++ + E ++ + + A AGSGKT +L +R+ LL P +L +T T Sbjct: 31 LLEGLNPQQREAVVHA--GSPLLIVAGAGSGKTAVLTRRIAYLLAERGVTPGQILAITFT 88 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM RV ++ + + Sbjct: 89 NKAAAEMRERVAALVGPRA--------------------------------------NAM 110 Query: 132 KVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST-------------- 176 V T H+ C I++ Q L + S+F+I D + S++L+ K Sbjct: 111 WVSTFHSSCVRILRAQAALLPGLNSNFSIYDSDDSRRLLTMISKDLELDTKRFSARLLAT 170 Query: 177 ----LASIMLDNNEELKKA-----------------FYEILEISNDEDIETLISDIISNR 215 L + ++ E + A + + L +N D + LI + ++ Sbjct: 171 HISNLKNELVGPEEAVVAADQDPAELPRLIAKVYGHYQQRLRAANALDFDDLIGETVALL 230 Query: 216 TALKLIFFFFSYLWRRKIIEK 236 A I ++ +R ++++ Sbjct: 231 QAFPQIAEYYRRRFRHVLVDE 251 >gi|229003295|ref|ZP_04161125.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock1-4] gi|228757913|gb|EEM07128.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock1-4] Length = 747 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 56/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q H D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAHMSITDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ +++ + Sbjct: 62 VLAITFTNKAAREMRERIDKLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDASDQLTVVKKIMKE 134 >gi|57234053|ref|YP_181909.1| ATP-dependent DNA helicase PcrA [Dehalococcoides ethenogenes 195] gi|57224501|gb|AAW39558.1| ATP-dependent DNA helicase PcrA [Dehalococcoides ethenogenes 195] Length = 738 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 41/166 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 + + ++ + + + A + + A GSGKT ++ R+ L+ + +P ++ +T Sbjct: 3 DILTGLNPAQKQAVEAVE--GPVLILAGPGSGKTRVITHRIAYLIKVVGINPHRIMAVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R L + G Sbjct: 61 TNKAAREMETR--------------------------------------LNLLAPSAAGR 82 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L + T HA C I++Q L + + F I D++ + LI++A Sbjct: 83 LTMGTFHAICARILRQDGLPLGVPADFVIYDDDDQQSLIKQAMAEL 128 >gi|302871914|ref|YP_003840550.1| UvrD/REP helicase [Caldicellulosiruptor obsidiansis OB47] gi|302574773|gb|ADL42564.1| UvrD/REP helicase [Caldicellulosiruptor obsidiansis OB47] Length = 714 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 39/165 (23%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ + + +Q A V A AGSGKT ++ R+ +L A+P +L +T T Sbjct: 1 MEWLKELNDQQKEAVLSTEGPLLVLAGAGSGKTRVITYRIAYILNMGLANPGNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ ++ + Sbjct: 61 NKAADEMKERIKRLVNT-------------------------------------QSFSEM 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HA C I++ +++F I D + +L++E Sbjct: 84 WVSTFHAACARILRMEAHNIGFSNNFVIFDTQDKNQLLKECFDKL 128 >gi|15678539|ref|NP_275654.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta H] gi|2621583|gb|AAB85017.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta H] Length = 683 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 90/231 (38%), Gaps = 47/231 (20%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 I T ++ T V A G+GKT I+V+RV L+ A PS+L+ +T T+ AA Sbjct: 8 IQLTDEQRRAVEHFTGPLLVVAGPGAGKTRIIVERVAHLIDERGAEPSSLVVITFTRKAA 67 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ R++ + + +++ T Sbjct: 68 DELKERIIRRVGGRAE--------------------------------------EMQIST 89 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEELKKAFYE 194 IH+FC I++ +P + S+F + DEE I E ++ L ++ + ++ F E Sbjct: 90 IHSFCNRILRMYPDHHTLGSNFHVLDEENQLMFIYEHREQLGLGNVQRERFPLIQGFFSE 149 Query: 195 ILEISNDEDIETLISDIISN---RTALKLIFFFFSYLWRRKIIEKSLWSIA 242 E N D ETLI + R + + + YL E L A Sbjct: 150 CQE--NMVDPETLIQHYRNKGAGRFEMTVAEAYQRYLNLMD--ENGLLDFA 196 >gi|152974126|ref|YP_001373643.1| ATP-dependent DNA helicase PcrA [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022878|gb|ABS20648.1| ATP-dependent DNA helicase PcrA [Bacillus cytotoxicus NVH 391-98] Length = 741 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L +Q + A AGSGKT +L R+ LL P +L +T T A Sbjct: 8 LNGLNPEQQKAVQTTEGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNILAITFTNKA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ + + + Sbjct: 68 AREMRERIDTLVGPEAE--------------------------------------DIWIS 89 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D ++++ K Sbjct: 90 TFHSMCVRILRRDIDRIGINRNFTILDASDQLTVVKKIMKE 130 >gi|307700275|ref|ZP_07637315.1| putative ATP-dependent DNA helicase PcrA [Mobiluncus mulieris FB024-16] gi|307614486|gb|EFN93715.1| putative ATP-dependent DNA helicase PcrA [Mobiluncus mulieris FB024-16] Length = 900 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 47/212 (22%), Positives = 74/212 (34%), Gaps = 53/212 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 ++ + P + V A AGSGKT +L +R+ LL P +L +T T AA EM Sbjct: 59 NPAQYQAVTHPGGALLVMAGAGSGKTRVLTRRIAWLLATGRVRPWEILAITFTNKAAGEM 118 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ + + V T H+ Sbjct: 119 RERVETLVGNAAKY--------------------------------------MWVSTFHS 140 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK------------KSTLASIMLDNNE 186 C I++ IT F+I D +K L+ KS A I NE Sbjct: 141 SCVRILRAEAETLGITRSFSIYDTADTKALLTRIIKGRGLDPKRFTPKSFAARISNAKNE 200 Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTAL 218 ++ A E++ + I L ++I + L Sbjct: 201 LVEPA--TFAEMAAPDKISQLTAEIYAEYQQL 230 >gi|215426220|ref|ZP_03424139.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis T92] gi|289749473|ref|ZP_06508851.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis T92] gi|289690060|gb|EFD57489.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis T92] Length = 632 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 82/232 (35%), Gaps = 44/232 (18%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 + +D ++ + + ++ + A AGSGKT +L +R+ L+ A +L +T Sbjct: 18 QLLDGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV+ ++ + Sbjct: 76 TNKAAAEMRERVVGLVGEKARY-------------------------------------- 97 Query: 131 LKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + V T H+ C I++ + S+F+I D + S++L++ + I + L Sbjct: 98 MWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLA 157 Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 A + D ++ + + L ++R++ + Sbjct: 158 NAISNLKNELIDP--HQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDF 207 >gi|72383505|ref|YP_292860.1| ATP-dependent DNA helicase Rep [Prochlorococcus marinus str. NATL2A] gi|72003355|gb|AAZ59157.1| ATP-dependent DNA helicase, Rep family [Prochlorococcus marinus str. NATL2A] Length = 805 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 19/172 (11%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 ++ Q A D V A AGSGKT L R+ L+ PS++L +T T Sbjct: 8 FLNGLNEAQSHAVDHFHGPLLVVAGAGSGKTRALTHRIAHLITEYKVDPSSILAVTFTNK 67 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG-LK 132 AA EM R+ ++ + GK +++ R + I L Sbjct: 68 AAREMKDRLELLLAKRLS----------SLTHGKPWTALQVAEQREIRNRIHREISRELW 117 Query: 133 VQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178 + T HA +++ +F + T F+I DE ++ LI+E L Sbjct: 118 IGTFHALFSRLLRFDIDKFKDPEGLTWTKQFSIYDETDAQSLIKEIVTQDLQ 169 >gi|319744909|gb|EFV97242.1| ATP-dependent nuclease subunit A [Streptococcus agalactiae ATCC 13813] Length = 1208 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 29/218 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++V+R+L LL +L T T AA E+ Sbjct: 30 TPEQIEAIYTFGNNVLVSASAGSGKTFVMVERILDKLLRGVPIESLFISTFTVKAAGELK 89 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I + ++ + L L + T+ AF Sbjct: 90 ERLEKKI-------------------NESLKSAESDDLKQFLTQQLVGIQTADIATMDAF 130 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-E 197 + I+ Q+ I+ F I D+ + + E + M N +F +++ Sbjct: 131 TQKIVNQYGYTLGISPIFRILQDKNEQDVIKNEVYADLFSDYMTGKNAA---SFIKLVKN 187 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 S + +++ K+ F S ++ ++ Sbjct: 188 FSGNRKDSKAFREMV-----YKVYAFSQSTDNPKRWMQ 220 >gi|312144162|ref|YP_003995608.1| ATP-dependent DNA helicase PcrA [Halanaerobium sp. 'sapolanicus'] gi|311904813|gb|ADQ15254.1| ATP-dependent DNA helicase PcrA [Halanaerobium sp. 'sapolanicus'] Length = 715 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 40/163 (24%) Query: 15 DLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 D+I EQ A + + A AGSGKT +L +R+ L+ P +L +T T Sbjct: 5 DIIKDLNKEQKKAVQHDKGPLLLLAGAGSGKTRVLTRRIAYLIKQRGVSPYNILAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM +RV +++ L Sbjct: 65 KAAEEMKNRVAKMVDGVDK--------------------------------------SLL 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + T H+FC I+++ + S+F I D +KLI++ K Sbjct: 87 ISTFHSFCVRILRREAEKLGYQSNFVIFDSIDQRKLIKKILKE 129 >gi|229101109|ref|ZP_04231875.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-28] gi|228682237|gb|EEL36348.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-28] Length = 749 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDILVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|17231987|ref|NP_488535.1| DNA helicase II [Nostoc sp. PCC 7120] gi|17133631|dbj|BAB76194.1| DNA helicase II [Nostoc sp. PCC 7120] Length = 772 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 75/196 (38%), Gaps = 19/196 (9%) Query: 13 TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70 T D +S Q A + V A AGSGKT L R+ L+L + P +L +T Sbjct: 2 TTDFLSHLNPSQRQAVEHYCGPLLVVAGAGSGKTRALTYRIANLILKHRVAPENILAVTF 61 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ + L++ ++ + +S + K T Sbjct: 62 TNKAAREMKERIQRLFAEQLALTEHGKRLDLLPEHEQTKLRSRVYKT---------TIKE 112 Query: 131 LKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 L T H+ I++ ++ E +F+I DE + LI+E L + D Sbjct: 113 LWCGTFHSLFSRILRFDIEKYQDEKGRQWNRNFSIFDESDVQGLIKEIVTKQLN--LDDK 170 Query: 185 NEELKKAFYEILEISN 200 E + Y I N Sbjct: 171 KFEPRSVRYAISNAKN 186 >gi|325479235|gb|EGC82331.1| putative ATP-dependent DNA helicase PcrA [Anaerococcus prevotii ACS-065-V-Col13] Length = 731 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 62/188 (32%), Gaps = 45/188 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +D ++ ++ V A AGSGKT +L + L+ N P ++ +T T Sbjct: 3 LDSLN--NMQKKAVLHDKGPLLVLAGAGSGKTRVLTTSIAYLIEEKNIDPRNIIAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ L Sbjct: 61 KAANEMKERISNLLNMDV--------------------------------------SHLW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ C I++ + +F I D K L++E + + + ++A Sbjct: 83 IGTFHSICARILRMNIDKIGYDKNFTIYDSSDQKTLVKE----IINELGFKEDITPREAL 138 Query: 193 YEILEISN 200 I + N Sbjct: 139 NVISQAKN 146 >gi|304413632|ref|ZP_07395076.1| DNA-dependent ATPase I and helicase II [Candidatus Regiella insecticola LSR1] gi|304283723|gb|EFL92117.1| DNA-dependent ATPase I and helicase II [Candidatus Regiella insecticola LSR1] Length = 715 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 70/193 (36%), Gaps = 46/193 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68 S +D +++ + E + + V A AGSGK+ +LV R+ LL + P +++ + Sbjct: 1 MSNLLDGLNEKQREAVA--TRYKHLLVLAGAGSGKSRVLVHRIAWLLSQEDISPFSIIAV 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T +AAEM HR+ + A Sbjct: 59 TFTNKSAAEMRHRIENLGRA---------------------------------------H 79 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 G+ V T H +++ L AN+ F + D + + K + S+ LD + Sbjct: 80 NGMWVGTFHGLAHRLLRIHHLAANLPQDFQVLDSDDQLRF----VKRIIKSLDLDEKKWS 135 Query: 189 KKAFYEILEISND 201 + + D Sbjct: 136 PRQAISYINGKKD 148 >gi|222094063|ref|YP_002528120.1| ATP-dependent DNA helicase [Bacillus cereus Q1] gi|229137129|ref|ZP_04265748.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST26] gi|221238118|gb|ACM10828.1| ATP-dependent DNA helicase [Bacillus cereus Q1] gi|228646301|gb|EEL02516.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST26] Length = 747 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L +Q + A AGSGKT +L R+ LL P +L +T T A Sbjct: 8 LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ + + + Sbjct: 68 AREMRERIDTLVGPEAE--------------------------------------DIWIS 89 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D ++++ K Sbjct: 90 TFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130 >gi|240138235|ref|YP_002962707.1| putative ATP-dependent exodeoxyribonuclease (Subunit A)/helicase [Methylobacterium extorquens AM1] gi|240008204|gb|ACS39430.1| putative ATP-dependent exodeoxyribonuclease (Subunit A)/helicase [Methylobacterium extorquens AM1] Length = 1116 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 7/151 (4%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 RS V A AGSGKT ++ R+ +L + P + ++ T+ AA+E+ RV +++ Sbjct: 22 ERSMIVEAGAGSGKTALMSGRIALMLASGVAPGAIAAVSFTELAASELLERVGDVVAH-- 79 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 +L+ E+ + L L TIH FC+ +++ +P+E Sbjct: 80 -----LLAGEVPEELRLALPHGLSPLQGANLAEAEARLDELVCTTIHGFCQRLVKPYPVE 134 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 A+I +ADE ++ + + L + Sbjct: 135 ADIDPGARVADEAEADGIFRDLLDEWLRECL 165 >gi|237714589|ref|ZP_04545070.1| ATP-dependent DNA helicase [Bacteroides sp. D1] gi|262406455|ref|ZP_06083004.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_22] gi|294643703|ref|ZP_06721503.1| putative ATP-dependent DNA helicase PcrA [Bacteroides ovatus SD CC 2a] gi|229445358|gb|EEO51149.1| ATP-dependent DNA helicase [Bacteroides sp. D1] gi|262355158|gb|EEZ04249.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 2_1_22] gi|292640941|gb|EFF59159.1| putative ATP-dependent DNA helicase PcrA [Bacteroides ovatus SD CC 2a] Length = 792 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 57/165 (34%), Gaps = 40/165 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHT 71 + I + Q A + V A AGSGKT +L ++ LL +P +L LT T Sbjct: 4 NYIDELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ + M +AR+L Sbjct: 64 NKAAREMKERIARQVG--------------------------MERARYL----------- 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ TS F I D SK L+ K Sbjct: 87 WMGTFHSIFSRILRAEAQYIGFTSQFTIYDTADSKSLLRSIIKEM 131 >gi|47569949|ref|ZP_00240614.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9241] gi|228983546|ref|ZP_04143751.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|47553395|gb|EAL11781.1| ATP-dependent DNA helicase PcrA [Bacillus cereus G9241] gi|228776142|gb|EEM24503.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 747 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L +Q + A AGSGKT +L R+ LL P +L +T T A Sbjct: 8 LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ + + + Sbjct: 68 AREMRERIDTLVGPEAE--------------------------------------DIWIS 89 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D ++++ K Sbjct: 90 TFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130 >gi|296330119|ref|ZP_06872601.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673364|ref|YP_003865036.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii str. W23] gi|296152708|gb|EFG93575.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411608|gb|ADM36727.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. spizizenii str. W23] Length = 739 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 41/167 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 ++ + ++ + E + +D + A AGSGKT +L R+ L+ + P +L + Sbjct: 5 SNQLLSGLNPVQQEAVKTTD--GPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAI 62 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV I+ + Sbjct: 63 TFTNKAAREMKERVESILGPGA-------------------------------------- 84 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F+I D +I+ K Sbjct: 85 DDIWISTFHSMCVRILRRDIDRIGINRNFSILDTADQLSVIKGILKE 131 >gi|228989471|ref|ZP_04149456.1| ATP-dependent DNA helicase pcrA [Bacillus pseudomycoides DSM 12442] gi|228770196|gb|EEM18775.1| ATP-dependent DNA helicase pcrA [Bacillus pseudomycoides DSM 12442] Length = 747 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 56/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q H D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAHMSITDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ +++ + Sbjct: 62 VLAITFTNKAAREMRERIDKLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDASDQLTVVKKIMKE 134 >gi|228995666|ref|ZP_04155329.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock3-17] gi|228764043|gb|EEM12927.1| ATP-dependent DNA helicase pcrA [Bacillus mycoides Rock3-17] Length = 747 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 56/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q H D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAHMSITDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ +++ + Sbjct: 62 VLAITFTNKAAREMRERIDKLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDASDQLTVVKKIMKE 134 >gi|167634189|ref|ZP_02392511.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0442] gi|170688392|ref|ZP_02879601.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0465] gi|254742291|ref|ZP_05199977.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Kruger B] gi|167530503|gb|EDR93218.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0442] gi|170667724|gb|EDT18478.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0465] Length = 751 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDHIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|229159445|ref|ZP_04287463.1| ATP-dependent DNA helicase pcrA [Bacillus cereus R309803] gi|228624016|gb|EEK80824.1| ATP-dependent DNA helicase pcrA [Bacillus cereus R309803] Length = 754 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDKLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDRIGINRNFTILDAGDQLTVVKKIMKE 134 >gi|228899022|ref|ZP_04063295.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222] gi|228860597|gb|EEN04984.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222] Length = 749 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 + ++ ++ +Q + A AGSGKT +L R+ LL P +L +T Sbjct: 6 KLLNGLN--PQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITF 63 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + Sbjct: 64 TNKAAREMRERIDTLVGPEAE--------------------------------------D 85 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 86 IWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130 >gi|311064185|ref|YP_003970910.1| ATP-dependent DNA helicase PcrA [Bifidobacterium bifidum PRL2010] gi|310866504|gb|ADP35873.1| PcrA ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010] Length = 885 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 64/176 (36%), Gaps = 45/176 (25%) Query: 8 QEHSETI-----DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NA 60 Q+ + I +L+ +Q A + A AGSGKT +L +R+ +L A Sbjct: 2 QQDPDLIARSAEELVGDLNPQQAEAVQYRGPALLIGAGAGSGKTRVLTRRIAWILTQFGA 61 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 PS +L +T T AAAEM R+ +I + Sbjct: 62 WPSQILAITFTNKAAAEMRERLEGLIGPVAQ----------------------------- 92 Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ + S F+I D ++L++ Sbjct: 93 ---------RMWVSTFHSACVRILRRDGQSIGLASGFSIYDTADCERLVKLVGADL 139 >gi|227530244|ref|ZP_03960293.1| ATP-dependent DNA helicase PcrA [Lactobacillus vaginalis ATCC 49540] gi|227349833|gb|EEJ40124.1| ATP-dependent DNA helicase PcrA [Lactobacillus vaginalis ATCC 49540] Length = 761 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D ++ ++E +L ++ V A AGSGKT +L R+ L+ P +L +T T Sbjct: 10 LLDGMNDKQTEAVLTTE--GPLLVMAGAGSGKTRVLTHRIAYLIEEKGVLPWNILAITFT 67 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +++ E+ + Sbjct: 68 NKAAREMQERVGKLLG--------------------------------------ESARDI 89 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HA C I+++ + F IAD + + L++ Sbjct: 90 WVSTFHALCVRILRRDIEKLGYNRAFTIADTSEQRTLMKRICAEL 134 >gi|227512902|ref|ZP_03942951.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri ATCC 11577] gi|227083902|gb|EEI19214.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri ATCC 11577] Length = 743 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 74/211 (35%), Gaps = 54/211 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 K ++ + A AGSGKT +L R+ ++ N P +L +T T AA EM Sbjct: 11 NKDQKDAVIHTEGPVLIMAGAGSGKTRVLTHRIAYIIEHNHVMPWNILAITFTNKAAREM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ E+ + V T HA Sbjct: 71 RERVSKLLD--------------------------------------ESGDDVWVSTFHA 92 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS------------TLASIMLDNNE 186 C I+++ + F IAD + + L++ + L+SI N+ Sbjct: 93 LCVRILRRNIDQLGFNRAFTIADTSEQRTLVKRVLRELNIDPKRFDPRAVLSSISNAKND 152 Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTA 217 L + + D D + +++D+ A Sbjct: 153 LLTP---KAFKAQADSDFDQIVADVYERYQA 180 >gi|254432144|ref|ZP_05045847.1| ATP-dependent DNA helicase PcrA [Cyanobium sp. PCC 7001] gi|197626597|gb|EDY39156.1| ATP-dependent DNA helicase PcrA [Cyanobium sp. PCC 7001] Length = 800 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 48/213 (22%), Positives = 81/213 (38%), Gaps = 22/213 (10%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 ++ Q A D T V A AGSGKT L R+ L+ A P+ LL +T T Sbjct: 4 FLAGLNEAQRKAVDHHTGPLLVVAGAGSGKTRALTHRIAHLIGHHGADPAELLAVTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ ++ ++ + P + +++ L + Sbjct: 64 AAREMKERLELLLA------QKLAQSQFGQPWSTLPLLEQRQLRSRIYREVIKD---LWI 114 Query: 134 QTIHAFCEAIMQ------QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 T HA +++ + P + T F+I DE + LI+E + LD Sbjct: 115 GTFHALFARLLRFDIDKFRDPEGLSWTRQFSIYDEGDVQSLIKEIVTQ---ELGLDPKRF 171 Query: 188 LKKAFYEILEISNDEDI--ETLISDIISNRTAL 218 K + + ++ E L +D R L Sbjct: 172 EPKKVRWAISNAKNQGWMPEQLEADAGGQRGKL 204 >gi|219683935|ref|YP_002470318.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp. lactis AD011] gi|219621585|gb|ACL29742.1| ATP-dependent DNA helicase PcrA [Bifidobacterium animalis subsp. lactis AD011] Length = 907 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 60/164 (36%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +LI +Q A + A AGSGKT +L +R+ +L A PS +L +T T Sbjct: 14 ELIGDLNEQQAQAVQYRGPALLIGAGAGSGKTRVLTRRIAWILTQFGAWPSQVLAITFTN 73 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ +I + + Sbjct: 74 KAAAEMRERLGALIGGVA--------------------------------------DRMW 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + + S F I D ++LI+ Sbjct: 96 VSTFHSACVRILRRDGEQIGLKSGFTIYDTADCERLIKLVCADF 139 >gi|253698715|ref|YP_003019904.1| UvrD/REP helicase [Geobacter sp. M21] gi|251773565|gb|ACT16146.1| UvrD/REP helicase [Geobacter sp. M21] Length = 731 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 44/190 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L + ++ V A AGSGKT ++V R+ L+ +L +T T A Sbjct: 4 LHNLNPPQKEAVLHGEGPLLVLAGAGSGKTRVIVHRIAYLIHERGVPAWQILGVTFTNKA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ G+ P + Sbjct: 64 AGEMRERLAHMLG-----------------DGELPL----------------------IS 84 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C I++ S+FAI D++ +KL+++ + LD KA Sbjct: 85 TFHSTCARILRSEIRHLGYDSNFAIYDDKDCEKLLKDCA----TELNLDEKRYPAKALAG 140 Query: 195 ILEISNDEDI 204 L+ ++ + Sbjct: 141 ALDEFKNQGL 150 >gi|167461916|ref|ZP_02327005.1| PcrA [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382982|ref|ZP_08056812.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153005|gb|EFX45465.1| ATP-dependent DNA helicase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 776 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 64/171 (37%), Gaps = 40/171 (23%) Query: 8 QEHSETIDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTL 65 E +D I + +Q A + T+ + A AGSGKT +L R+ L+ + A P ++ Sbjct: 2 NETKNILDAIQRLNPQQCKAVETTQGPLLIMAGAGSGKTRVLTHRIAYLIASRKAAPWSI 61 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T AA EM RV ++ + Sbjct: 62 LAITFTNKAAREMQDRVGKLAGPAAE---------------------------------- 87 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ TS+F+I D +I+ K Sbjct: 88 ----DIWVSTFHSMCVRILRKDISRLGFTSNFSILDSSDQLSVIKTCMKEL 134 >gi|19703927|ref|NP_603489.1| ATP-dependent DNA helicase pcrA [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714099|gb|AAL94788.1| ATP-dependent DNA helicase pcrA [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 735 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 41/165 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 ++ ++ + E L D S + A AGSGKT + R+ ++ P ++L +T Sbjct: 1 MNLLEKLNDKQREAALQID--GSILILAGAGSGKTRTITYRIAHMIENVGISPYSILAVT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV E++ + Sbjct: 59 FTNKAAKEMRERVEELVGDVAKAC------------------------------------ 82 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + T H+F +++ + E S+F I D + K++++ K Sbjct: 83 --TISTFHSFGMRLLRMYGKEVGYNSNFTIYDTDDQKRIVKAILK 125 >gi|229055131|ref|ZP_04195559.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH603] gi|228721207|gb|EEL72736.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH603] Length = 743 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 + ++ ++ +Q + + A AGSGKT +L R+ LL P +L +T Sbjct: 6 KLLNGLN--PQQQKAVQTTNGALLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITF 63 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ +++ + Sbjct: 64 TNKAAREMRERIDKLVGPEAE--------------------------------------D 85 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 86 IWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130 >gi|222151885|ref|YP_002561045.1| ATP-depentend DNA helicase [Macrococcus caseolyticus JCSC5402] gi|222121014|dbj|BAH18349.1| ATP-depentend DNA helicase [Macrococcus caseolyticus JCSC5402] Length = 721 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 56/157 (35%), Gaps = 39/157 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78 + ++ + A AGSGKT +L R+ L+ + P +L +T T AA EM Sbjct: 9 NEEQRQAVMTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKDVSPYKILAITFTNKAAKEM 68 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +II S + + + T H+ Sbjct: 69 KERVKKIIGDESDV--------------------------------------IWISTFHS 90 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 C I+++ I +F I D + ++++ K Sbjct: 91 MCVRILRRDIDRIGIERNFTILDPTDQRSVVKDILKR 127 >gi|50843216|ref|YP_056443.1| ATP-dependent DNA helicase [Propionibacterium acnes KPA171202] gi|50840818|gb|AAT83485.1| ATP-dependent DNA helicase [Propionibacterium acnes KPA171202] gi|315106181|gb|EFT78157.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL030PA1] Length = 810 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 40/163 (24%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL++ Q A V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 40 DLLADLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV++++ + + Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V T H+ I++ I+ +F+I D+ +K+LI + Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164 >gi|75909567|ref|YP_323863.1| ATP-dependent DNA helicase Rep [Anabaena variabilis ATCC 29413] gi|75703292|gb|ABA22968.1| ATP-dependent DNA helicase, Rep family [Anabaena variabilis ATCC 29413] Length = 772 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 75/196 (38%), Gaps = 19/196 (9%) Query: 13 TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70 T D +S Q A + V A AGSGKT L R+ L+L + P +L +T Sbjct: 2 TTDFLSHLNPSQRQAVEHYCGPLLVVAGAGSGKTRALTYRIANLILKHRVAPENILAVTF 61 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ + L++ ++ + +S + K T Sbjct: 62 TNKAAREMKERIQRLFAEQLALTEHGKRLDLLPEHEQTKLRSRVYKT---------TIKE 112 Query: 131 LKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 L T H+ I++ ++ E +F+I DE + LI+E L + D Sbjct: 113 LWCGTFHSLFSRILRFDIEKYQDEKGRQWNRNFSIFDESDVQGLIKEIVTKQLN--LDDK 170 Query: 185 NEELKKAFYEILEISN 200 E + Y I N Sbjct: 171 KFEPRSVRYAISNAKN 186 >gi|317407330|gb|EFV87300.1| DNA helicase II [Achromobacter xylosoxidans C54] Length = 762 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 79/222 (35%), Gaps = 45/222 (20%) Query: 16 LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 ++ + EQ A + A V A AGSGKT +L R+ L+ A P LL +T T Sbjct: 1 MLEKLNPEQRAAVTLEPQHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFGLLAVTFTNK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ I+ + GL + Sbjct: 61 AAREMLARMSAILPIDTR--------------------------------------GLWI 82 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ +A + F I D A K + + +D+ + + Sbjct: 83 GTFHGLCNRMLRAHHRDAGLPQTFQILDVTDQLA----AIKRLMKANGVDDEKYPPRDVQ 138 Query: 194 EILEISNDEDIETL-ISDIISNRTALKLIFFFFSYLWRRKII 234 + + +E + + ++R L I+ + +R+ + Sbjct: 139 RFINGAKEEGLRPADVEAYDAHRRRLIEIYQLYEAQCQREGV 180 >gi|302340231|ref|YP_003805437.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293] gi|301637416|gb|ADK82843.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293] Length = 728 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 84/224 (37%), Gaps = 49/224 (21%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 + +D +++ + E +L P S + A AGSGKT ++ ++ ++ P ++L Sbjct: 5 DVPAYLDALNRAQQEAVLYEGP--SLLILAGAGSGKTRVITSKIAYMIDRLGYDPYSILA 62 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV ++ + + Sbjct: 63 VTFTNKAAGEMRQRVAAMVPDGAKVM---------------------------------- 88 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 ++T H+F + ++ ++ +F I D+E S L+ ++ + Sbjct: 89 -----IRTFHSFGAWLCRRHAKLLDLDPNFTIYDDEDSLTLLHALEEGKKRRELAPYAHL 143 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231 + +A + +S D+++E+L D ++ + R Sbjct: 144 ISRA--KDYALSPDDELESLSRD-----PDFPRLYHSYEERLRE 180 >gi|237744963|ref|ZP_04575444.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 7_1] gi|229432192|gb|EEO42404.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 7_1] Length = 735 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 41/165 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 ++ ++ + E AS S + A AGSGKT + R+ ++ P ++L +T Sbjct: 1 MNLLEKLNDKQRE--AASQIDGSILILAGAGSGKTRTITYRIAHMIENIGISPYSILAVT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV E++ + Sbjct: 59 FTNKAAKEMRERVEELVGDVAKAC------------------------------------ 82 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + T H+F +++ + E S+F I D + K++++ K Sbjct: 83 --TISTFHSFGMRLLRMYGKEVGYNSNFTIYDTDDQKRIVKAILK 125 >gi|172038900|ref|YP_001805401.1| ATP-dependent DNA helicase [Cyanothece sp. ATCC 51142] gi|171700354|gb|ACB53335.1| ATP-dependent DNA helicase [Cyanothece sp. ATCC 51142] Length = 772 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 28/189 (14%) Query: 10 HSETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 + +++ +SQ Q +A + V A AGSGKT L R+ L+ P ++L Sbjct: 1 MTASVNFLSQLNPSQRIAVEHFCGPLLVVAGAGSGKTRALTYRIAHLITHYQVDPESILA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL-E 126 +T T AA EM R+ + L K G+ N + LL + + Sbjct: 61 VTFTNKAAREMKDRLERLFAQEMAL----------KHHGQPFNSLSEYDQKRLLSQVYKK 110 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITS---------HFAIADEEQSKKLIEEAKKSTL 177 T L + T H+ C I++ + N +F+I DE + L++ L Sbjct: 111 TTKKLWIGTFHSLCARILR---YDINKYQDERKRTWERNFSIFDESDVQSLVKNI---VL 164 Query: 178 ASIMLDNNE 186 LD+ + Sbjct: 165 KQFNLDDKK 173 >gi|296444468|ref|ZP_06886433.1| UvrD/REP helicase [Methylosinus trichosporium OB3b] gi|296258115|gb|EFH05177.1| UvrD/REP helicase [Methylosinus trichosporium OB3b] Length = 777 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 66/191 (34%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 + EQ A + V A AG+GKT +L R+ +L + A P +L +T T Sbjct: 30 FLDALNPEQRAAVETIDGPLLVLAGAGTGKTRVLTTRIAHILASAKARPWEILAVTFTNK 89 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV + + + Sbjct: 90 AAREMRERVETLAGPGAEALQ-------------------------------------WL 112 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T HA I+++ + S+F I D + +L+++ L + +D+ +A Sbjct: 113 GTFHAISAKILRRHAELVGLKSNFTILDTDDQIRLLKQ----VLQAENVDDKRWPPRALA 168 Query: 194 EILEISNDEDI 204 ++ + + Sbjct: 169 HQIDAWKNRGL 179 >gi|261414687|ref|YP_003248370.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371143|gb|ACX73888.1| UvrD/REP helicase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325603|gb|ADL24804.1| ATP-dependent DNA helicase, UvrD/REP family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 803 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 57/161 (35%), Gaps = 41/161 (25%) Query: 18 SQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 S+ EQL A + T V A AGSGKT L R L L+ P+ +LC+T T AA Sbjct: 19 SRLDKEQLEAVETTEGYVRVVAGAGSGKTRTLTHRYLYLVKEMGISPANILCVTFTNKAA 78 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ I+ + T Sbjct: 79 AEMKKRIRSILGGDDSGY---------------------------------------IST 99 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H FC +++ N F I DE+ K L+ +A Sbjct: 100 FHGFCVQFLREEIHVLNYPKEFMILDEDDQKSLLRKAYADL 140 >gi|228913033|ref|ZP_04076672.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846438|gb|EEM91451.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 747 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L +Q + A AGSGKT +L R+ LL P +L +T T A Sbjct: 8 LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ + + + Sbjct: 68 AREMRERIDTLVGPEAE--------------------------------------DIWIS 89 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D ++++ K Sbjct: 90 TFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130 >gi|126661311|ref|ZP_01732380.1| DNA helicase II [Cyanothece sp. CCY0110] gi|126617407|gb|EAZ88207.1| DNA helicase II [Cyanothece sp. CCY0110] Length = 772 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 91/242 (37%), Gaps = 32/242 (13%) Query: 10 HSETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 + +++ +SQ Q LA + V A AGSGKT L R+ L+ P ++L Sbjct: 1 MTASVNFLSQLNPSQRLAVEHFCGPLLVVAGAGSGKTRALTYRIAHLITHYQVDPESILA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL-E 126 +T T AA EM R+ + L K + N + + LL + + Sbjct: 61 VTFTNKAAREMKDRLERLFAQEMAL----------KQHSQPFNSLSEYEQKRLLSQVYKK 110 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITS---------HFAIADEEQSKKLIEEAKKSTL 177 T L + T H+ C I++ + N +F+I DE + L++ L Sbjct: 111 TTKKLWIGTFHSLCARILR---YDINKYQDERKRTWERNFSIFDESDVQSLVKNI---VL 164 Query: 178 ASIMLDNNEELKKAFYEILEISNDEDI--ETLISD--IISNRTALKLIFFFFSYLWRRKI 233 LD+ + + + + + + E + + R ++ + + L Sbjct: 165 KQFNLDDKKFNPRNVRYTISNAKNLGLSPEAYLKENSYAKGRIIAEVYEEYQNQLAANNA 224 Query: 234 IE 235 ++ Sbjct: 225 LD 226 >gi|229131293|ref|ZP_04260195.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST196] gi|229165271|ref|ZP_04293058.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH621] gi|228618096|gb|EEK75134.1| ATP-dependent DNA helicase pcrA [Bacillus cereus AH621] gi|228652179|gb|EEL08114.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BDRD-ST196] Length = 743 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 + ++ ++ +Q + + A AGSGKT +L R+ LL P +L +T Sbjct: 6 KLLNGLN--PQQQKAVQTTNGALLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITF 63 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ +++ + Sbjct: 64 TNKAAREMRERIDKLVGPEAE--------------------------------------D 85 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 86 IWISTFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130 >gi|124025096|ref|YP_001014212.1| UvrD/REP helicase [Prochlorococcus marinus str. NATL1A] gi|123960164|gb|ABM74947.1| UvrD/REP helicase [Prochlorococcus marinus str. NATL1A] Length = 805 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 19/172 (11%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 ++ Q A D V A AGSGKT L R+ L+ PS++L +T T Sbjct: 8 FLNGLNEAQSHAVDHFHGPLLVVAGAGSGKTRALTHRIAHLITEYKVDPSSILAVTFTNK 67 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG-LK 132 AA EM R+ ++ + GK +++ R + I L Sbjct: 68 AAREMKDRLELLLAKRLS----------SLTHGKPWTALQVAEQREIRNRIHREISRELW 117 Query: 133 VQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178 + T HA +++ +F + T F+I DE ++ LI+E L Sbjct: 118 IGTFHALFSRLLRFDIDKFKDPEGLTWTKQFSIYDETDAQSLIKEIVTQDLQ 169 >gi|324324304|gb|ADY19564.1| ATP-dependent DNA helicase PcrA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 749 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L +Q + A AGSGKT +L R+ LL P +L +T T A Sbjct: 8 LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ + + + Sbjct: 68 AREMRERIDTLVGPEAE--------------------------------------DIWIS 89 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D ++++ K Sbjct: 90 TFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130 >gi|296141008|ref|YP_003648251.1| ATP-dependent DNA helicase PcrA [Tsukamurella paurometabola DSM 20162] gi|296029142|gb|ADG79912.1| ATP-dependent DNA helicase PcrA [Tsukamurella paurometabola DSM 20162] Length = 802 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 65/165 (39%), Gaps = 41/165 (24%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +L+ +Q A S + A AGSGKT +L +R+ LL HP +L +T T Sbjct: 29 ELLEGLNPQQKAAVLHEGSPLLIVAGAGSGKTAVLTRRIAYLLRARGMHPGQILAITFTN 88 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV ++I + + Sbjct: 89 KAAAEMRERVAQLIGPRA--------------------------------------NTMW 110 Query: 133 VQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I++ Q L + S+F+I D + S++L+ K Sbjct: 111 VSTFHSTCVRILRAQAGLLPGMNSNFSIYDADDSRRLLTMIVKEM 155 >gi|257869252|ref|ZP_05648905.1| ATP-dependent DNA helicase PcrA [Enterococcus gallinarum EG2] gi|257803416|gb|EEV32238.1| ATP-dependent DNA helicase PcrA [Enterococcus gallinarum EG2] Length = 750 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 39/162 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L + ++ + A AGSGKT +L R+ L+ N +P +L +T T A Sbjct: 12 LANMNPRQKEAVMHTEGPLLLMAGAGSGKTRVLTHRIAYLIEEKNVNPWNILAITFTNKA 71 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +++ + + V Sbjct: 72 AREMKERVNQLLGSGGE--------------------------------------DVWVS 93 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ C I+++ + + +F I D + L++ K Sbjct: 94 TFHSMCVRILRRDVDQIGYSRNFTIIDTSEQNTLMKRVLKEL 135 >gi|224539562|ref|ZP_03680101.1| hypothetical protein BACCELL_04467 [Bacteroides cellulosilyticus DSM 14838] gi|224518843|gb|EEF87948.1| hypothetical protein BACCELL_04467 [Bacteroides cellulosilyticus DSM 14838] Length = 667 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 54/163 (33%), Gaps = 38/163 (23%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + I + Q A + V A AGSGKT +L ++ LL P +L LT T Sbjct: 4 NYIEELNEGQRAAVLYNEGPSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + +ARHL + Sbjct: 64 AAREMKERIARQVGD--------------------------QRARHL-----------WM 86 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I+ TS F I D SK L+ K Sbjct: 87 GTFHSIFLRILHAEAANIGFTSQFTIYDTADSKSLVRSIIKEM 129 >gi|296501120|ref|YP_003662820.1| DNA helicase II [Bacillus thuringiensis BMB171] gi|296322172|gb|ADH05100.1| DNA helicase II [Bacillus thuringiensis BMB171] Length = 749 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L +Q + A AGSGKT +L R+ LL P +L +T T A Sbjct: 8 LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ + + + Sbjct: 68 AREMRERIDTLVGPEAE--------------------------------------DIWIS 89 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D ++++ K Sbjct: 90 TFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130 >gi|229182687|ref|ZP_04309928.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BGSC 6E1] gi|228600772|gb|EEK58351.1| ATP-dependent DNA helicase pcrA [Bacillus cereus BGSC 6E1] Length = 749 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L +Q + A AGSGKT +L R+ LL P +L +T T A Sbjct: 8 LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ + + + Sbjct: 68 AREMRERIDTLVGPEAE--------------------------------------DIWIS 89 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D ++++ K Sbjct: 90 TFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130 >gi|228931796|ref|ZP_04094692.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827776|gb|EEM73514.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 747 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L +Q + A AGSGKT +L R+ LL P +L +T T A Sbjct: 8 LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ + + + Sbjct: 68 AREMRERIDTLVGPEAE--------------------------------------DIWIS 89 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D ++++ K Sbjct: 90 TFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130 >gi|49183319|ref|YP_026571.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Sterne] gi|65317729|ref|ZP_00390688.1| COG0210: Superfamily I DNA and RNA helicases [Bacillus anthracis str. A2012] gi|165871400|ref|ZP_02216048.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0488] gi|167640142|ref|ZP_02398409.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0193] gi|170708734|ref|ZP_02899171.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0389] gi|177653645|ref|ZP_02935784.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0174] gi|190567423|ref|ZP_03020337.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis Tsiankovskii-I] gi|227812969|ref|YP_002812978.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. CDC 684] gi|229599888|ref|YP_002864922.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0248] gi|254756067|ref|ZP_05208096.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Vollum] gi|49177246|gb|AAT52622.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Sterne] gi|164712884|gb|EDR18413.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0488] gi|167511953|gb|EDR87332.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0193] gi|170126313|gb|EDS95203.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0389] gi|172081225|gb|EDT66300.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0174] gi|190561550|gb|EDV15521.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis Tsiankovskii-I] gi|227005824|gb|ACP15567.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. CDC 684] gi|229264296|gb|ACQ45933.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A0248] Length = 751 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 55/171 (32%), Gaps = 41/171 (23%) Query: 8 QEHSETID--LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPST 64 Q + D L +Q + A AGSGKT +L R+ LL P Sbjct: 2 QAYMSMTDRLLNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWN 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T AA EM R+ ++ + Sbjct: 62 VLAITFTNKAAREMRERIDTLVGPEAE--------------------------------- 88 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 89 -----DIWISTFHSMCVRILRRDIDHIGINRNFTILDSGDQLTVVKKIMKE 134 >gi|256826533|ref|YP_003150492.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing [Cryptobacterium curtum DSM 15641] gi|256582676|gb|ACU93810.1| ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing [Cryptobacterium curtum DSM 15641] Length = 1262 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 71/218 (32%), Gaps = 40/218 (18%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPST 64 +DL + + A AGSGKT L QR+ LL + Sbjct: 1 MDLSRLRPGQLASIKHLDGPLLICAGAGSGKTFTLTQRITWALLPGSGTNGSSFLNSIDE 60 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 L +T T AA E+ R+ + A +++ + Sbjct: 61 ALVITFTNKAAGEIKDRIRAALRAEGMMTEALKV-------------------------- 94 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 G + TIH C I+++ LEA++ F +A + EA L + + Sbjct: 95 ----DGAWISTIHGMCSRILREHALEADLDPAFELAMGADCQMARTEACACVLEEVKETD 150 Query: 185 NEELKKAFYEI-LEISNDEDIETLISDIISNRTALKLI 221 + + F + ++ I L+ ++ + Sbjct: 151 DNAYQALFAGFRTTQALEDSIGRLLDEVSYQTDGFASL 188 >gi|227523030|ref|ZP_03953079.1| ATP-dependent DNA helicase PcrA [Lactobacillus hilgardii ATCC 8290] gi|227089848|gb|EEI25160.1| ATP-dependent DNA helicase PcrA [Lactobacillus hilgardii ATCC 8290] Length = 743 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 74/211 (35%), Gaps = 54/211 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 K ++ + A AGSGKT +L R+ ++ N P +L +T T AA EM Sbjct: 11 NKDQKDAVIHTEGPVLIMAGAGSGKTRVLTHRIAYIIEHNHVMPWNILAITFTNKAAREM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ E+ + V T HA Sbjct: 71 RERVSKLLD--------------------------------------ESGDDVWVSTFHA 92 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS------------TLASIMLDNNE 186 C I+++ + F IAD + + L++ + L+SI N+ Sbjct: 93 LCVRILRRNIDQLGFNRAFTIADTSEQRTLVKRVLRELNIDPKRFDPRAVLSSISNAKND 152 Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTA 217 L + + D D + +++D+ A Sbjct: 153 LLTP---KAFKAQADSDFDQIVADVYERYQA 180 >gi|304385365|ref|ZP_07367710.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici DSM 20284] gi|304328572|gb|EFL95793.1| ATP-dependent DNA helicase PcrA [Pediococcus acidilactici DSM 20284] Length = 760 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 67/190 (35%), Gaps = 45/190 (23%) Query: 15 DLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL+ +Q + A AGSGKT +L RV L+ + +P +L +T T Sbjct: 8 DLLKGLNDMQQQAVQTTEGPLLIMAGAGSGKTRVLTHRVAYLIEEKDVNPWNILAITFTN 67 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + + Sbjct: 68 KAAREMRERVANLLGEVA--------------------------------------SEIW 89 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN-EELKKA 191 V T HA C I+++ + F+IAD + + LI K LA + D + + Sbjct: 90 VSTFHALCVRILRRDIEQIGYNRAFSIADPSEQRTLI----KHVLADLNYDPKVYDPRSV 145 Query: 192 FYEILEISND 201 +I ND Sbjct: 146 LGKISNAKND 155 >gi|167756539|ref|ZP_02428666.1| hypothetical protein CLORAM_02076 [Clostridium ramosum DSM 1402] gi|237733137|ref|ZP_04563618.1| ATP-dependent DNA helicase [Mollicutes bacterium D7] gi|167702714|gb|EDS17293.1| hypothetical protein CLORAM_02076 [Clostridium ramosum DSM 1402] gi|229383819|gb|EEO33910.1| ATP-dependent DNA helicase [Coprobacillus sp. D7] Length = 714 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 63/167 (37%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 E +L+++ + E D + A AGSGKT ++ R+ L+ P +L +T Sbjct: 1 MELDELLNKNQKEAATYLD--SHLRIIAGAGSGKTRVVTYRIAYLIDEIGVDPRKILAIT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ ++ G Sbjct: 59 FTNKAANEMKERITSLLGP-------------------------------------HALG 81 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L V TIH+ C I+++ N S+F I DEE K LI++ + Sbjct: 82 SL-VCTIHSLCVRILRRHINVINYPSNFMIMDEEDQKALIKKIYNNL 127 >gi|146296855|ref|YP_001180626.1| UvrD/REP helicase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410431|gb|ABP67435.1| ATP-dependent DNA helicase PcrA [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 714 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 43/186 (23%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ + + EQL A V A AGSGKT ++ R+ +L A PS +L +T T Sbjct: 1 MEWLKELNKEQLEAVLSTEGPLLVLAGAGSGKTRVITYRIAYILNMGLAKPSNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++++ +E+ + Sbjct: 61 NKAADEMKERIKKLVS-------------------------------------VESFAEM 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H+ C I++ +++F I D + +L++E + +D + K Sbjct: 84 WVSTFHSACAKILRMEAHNIGFSNNFVIFDMQDRNQLLKEC----FTKLNIDEEKLELKF 139 Query: 192 FYEILE 197 ++ Sbjct: 140 VSRLIS 145 >gi|188585469|ref|YP_001917014.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350156|gb|ACB84426.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 1161 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 20/171 (11%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAE 77 + D ++ V A AGSGKT LV R++ +++ ++ +T T+ AAAE Sbjct: 10 DQNQRDRIIEDLDQNILVEAGAGSGKTRSLVDRMVAQVVSGRYRVDEIVAITFTRKAAAE 69 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 + R + + +I L G + TIH Sbjct: 70 LRERFQNRLEEEYQKDYSPEVKDNIEI-------------------ALRNIEGTFLGTIH 110 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 +F ++++ P+EA + F DE +S + EE + L + L+ + L Sbjct: 111 SFAANLLRERPVEAGLDPEFQELDELESAIMEEEVFEEYLLYVRLNREDLL 161 >gi|289757034|ref|ZP_06516412.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis T85] gi|289712598|gb|EFD76610.1| ATP-dependent DNA helicase pcrA [Mycobacterium tuberculosis T85] Length = 650 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 82/232 (35%), Gaps = 44/232 (18%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 + +D ++ + + ++ + A AGSGKT +L +R+ L+ A +L +T Sbjct: 18 QLLDGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV+ ++ + Sbjct: 76 TNKAAAEMRERVVGLVGEKARY-------------------------------------- 97 Query: 131 LKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + V T H+ C I++ + S+F+I D + S++L++ + I + L Sbjct: 98 MWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLA 157 Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 A + D ++ + + L ++R++ + Sbjct: 158 NAISNLKNELIDP--HQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDF 207 >gi|219556815|ref|ZP_03535891.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis T17] gi|289568920|ref|ZP_06449147.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis T17] gi|289542674|gb|EFD46322.1| ATP-dependent DNA helicase II uvrD1 [Mycobacterium tuberculosis T17] Length = 422 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 82/232 (35%), Gaps = 44/232 (18%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 + +D ++ + + ++ + A AGSGKT +L +R+ L+ A +L +T Sbjct: 18 QLLDGLNPQQRQAVV--HEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV+ ++ + Sbjct: 76 TNKAAAEMRERVVGLVGEKARY-------------------------------------- 97 Query: 131 LKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + V T H+ C I++ + S+F+I D + S++L++ + I + L Sbjct: 98 MWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLA 157 Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 A + D ++ + + L ++R++ + Sbjct: 158 NAISNLKNELIDP--HQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDF 207 >gi|42779415|ref|NP_976662.1| ATP-dependent DNA helicase PcrA [Bacillus cereus ATCC 10987] gi|42735331|gb|AAS39270.1| ATP-dependent DNA helicase PcrA [Bacillus cereus ATCC 10987] Length = 747 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L +Q + A AGSGKT +L R+ LL P +L +T T A Sbjct: 8 LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ + + + Sbjct: 68 AREMRERIDTLVGPEAE--------------------------------------DIWIS 89 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D ++++ K Sbjct: 90 TFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130 >gi|300118924|ref|ZP_07056635.1| ATP-dependent DNA helicase PcrA [Bacillus cereus SJ1] gi|298723540|gb|EFI64271.1| ATP-dependent DNA helicase PcrA [Bacillus cereus SJ1] Length = 747 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L +Q + A AGSGKT +L R+ LL P +L +T T A Sbjct: 8 LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ + + + Sbjct: 68 AREMRERIDTLVGPEAE--------------------------------------DIWIS 89 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D ++++ K Sbjct: 90 TFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130 >gi|16077729|ref|NP_388543.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str. 168] gi|221308498|ref|ZP_03590345.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str. 168] gi|221312821|ref|ZP_03594626.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317745|ref|ZP_03599039.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str. JH642] gi|221322024|ref|ZP_03603318.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str. SMY] gi|7674149|sp|O34580|PCRA_BACSU RecName: Full=ATP-dependent DNA helicase pcrA gi|2577965|emb|CAA75552.1| PcrA protein [Bacillus subtilis subsp. subtilis str. 168] gi|2632975|emb|CAB12481.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. subtilis str. 168] Length = 739 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 41/167 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 ++ + ++ + E + +D + A AGSGKT +L R+ L+ + P +L + Sbjct: 5 SNQLLSGLNPVQQEAVKTTD--GPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAI 62 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV I+ + Sbjct: 63 TFTNKAAREMKERVESILGPGA-------------------------------------- 84 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F+I D +I+ K Sbjct: 85 DDIWISTFHSMCVRILRRDIDRIGINRNFSILDTADQLSVIKGILKE 131 >gi|148259238|ref|YP_001233365.1| UvrD/REP helicase [Acidiphilium cryptum JF-5] gi|326402391|ref|YP_004282472.1| DNA helicase II [Acidiphilium multivorum AIU301] gi|146400919|gb|ABQ29446.1| ATP-dependent DNA helicase, Rep family [Acidiphilium cryptum JF-5] gi|325049252|dbj|BAJ79590.1| DNA helicase II [Acidiphilium multivorum AIU301] Length = 728 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 41/167 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCL 68 S+ +D ++ + E + A D V A AG+GKT +L R LL A P+ +L + Sbjct: 1 MSDYLDRLNPAQREAVEAVD--GPVLVLAGAGTGKTRVLTTRFAHILLTRRAFPNQVLAV 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV ++ + Sbjct: 59 TFTNKAAREMRERVSALLGEPAE------------------------------------- 81 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 GL + T HA ++++ TS+F+I D + +L+++ ++ Sbjct: 82 -GLWLGTFHALAARMLRRHAELVGRTSNFSILDPDDQLRLLKQVMEA 127 >gi|301052017|ref|YP_003790228.1| ATP-dependent DNA helicase [Bacillus anthracis CI] gi|300374186|gb|ADK03090.1| ATP-dependent DNA helicase [Bacillus cereus biovar anthracis str. CI] Length = 747 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L +Q + A AGSGKT +L R+ LL P +L +T T A Sbjct: 8 LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ + + + Sbjct: 68 AREMRERIDTLVGPEAE--------------------------------------DIWIS 89 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D ++++ K Sbjct: 90 TFHSMCVRILRRDIDRIGINRNFTILDSGDQLTVVKKIMKE 130 >gi|226307919|ref|YP_002767879.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus erythropolis PR4] gi|226187036|dbj|BAH35140.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus erythropolis PR4] Length = 830 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 94/261 (36%), Gaps = 77/261 (29%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++ ++ + E ++ + + A AGSGKT +L +R+ LL P +L +T T Sbjct: 31 LLEGLNPQQREAVVHA--GSPLLIVAGAGSGKTAVLTRRIAYLLAERGVTPGQILAITFT 88 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM RV ++ + + Sbjct: 89 NKAAAEMRERVAALVGPRA--------------------------------------NAM 110 Query: 132 KVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST-------------- 176 V T H+ C I++ Q L + S+F+I D + S++L+ K Sbjct: 111 WVSTFHSSCVRILRAQAALLPGLNSNFSIYDSDDSRRLLTMISKDLELDTKRFSARLLAT 170 Query: 177 ----LASIMLDNNEELKKA-----------------FYEILEISNDEDIETLISDIISNR 215 L + ++ E + A + + L +N D + LI + ++ Sbjct: 171 HISNLKNELVGPEEAVVAADQDPAELPRLIAKVYGHYQQRLRAANALDFDDLIGETVALL 230 Query: 216 TALKLIFFFFSYLWRRKIIEK 236 A I ++ +R ++++ Sbjct: 231 QAFPQIAEYYRRRFRHVLVDE 251 >gi|293606186|ref|ZP_06688550.1| excision endonuclease subunit UvrD [Achromobacter piechaudii ATCC 43553] gi|292815446|gb|EFF74563.1| excision endonuclease subunit UvrD [Achromobacter piechaudii ATCC 43553] Length = 764 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 79/222 (35%), Gaps = 45/222 (20%) Query: 16 LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 ++ + EQ A + A V A AGSGKT +L R+ L+ A P LL +T T Sbjct: 2 MLEKLNPEQRAAVTLEPQHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFGLLAVTFTNK 61 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ I+ + GL + Sbjct: 62 AAREMLARMSAILPIDTR--------------------------------------GLWI 83 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ +A + F I D A K + + +D+ + + Sbjct: 84 GTFHGLCNRMLRAHHRDAGLPQSFQILDVTDQLA----AIKRLMKANGVDDEKYPPRDVQ 139 Query: 194 EILEISNDEDIE-TLISDIISNRTALKLIFFFFSYLWRRKII 234 + + +E + + ++R L ++ + +R+ + Sbjct: 140 RFINGAKEEGLRPQDVEAYDAHRRRLIEVYQLYEAQCQREGV 181 >gi|283956857|ref|ZP_06374330.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni 1336] gi|283791583|gb|EFC30379.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni 1336] Length = 921 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 7/178 (3%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + L+L + +L LT TK AA EM R++E + Sbjct: 8 LALEASAGSGKTFALSVRFVALILKGVRINEILALTFTKKAANEMQKRIIEAFLNLEKEN 67 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 E+ K+ GK + + L T LK+ T AF I++ F L + Sbjct: 68 KTSECNELCKLLGKDKEELISLRDAKK-EEFLRT--ELKISTFDAFFGKILRVFALNLGL 124 Query: 154 TSHFAIADEE-QSKKLI---EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL 207 +S F +++E +++ + + + ++ +E + F E+ + + + L Sbjct: 125 SSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLVDEKENFFNELEKFYENAYFQNL 182 >gi|300361106|ref|ZP_07057283.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri JV-V03] gi|300353725|gb|EFJ69596.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri JV-V03] Length = 757 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 39/170 (22%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66 + SE L ++ V A AGSGKT +L +R+ L+ P +L Sbjct: 9 EAMSEETILAGLNPQQKKAVQCTEGPLLVVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVL 68 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM RV +++ + Sbjct: 69 AITFTNKAATEMKERVQKLLGPAA------------------------------------ 92 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T HA C I+++ + +++F+IAD + LI+ +K Sbjct: 93 --DSVWMSTFHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDL 140 >gi|225861093|ref|YP_002742602.1| recombination helicase AddA [Streptococcus pneumoniae Taiwan19F-14] gi|298230417|ref|ZP_06964098.1| recombination helicase AddA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255440|ref|ZP_06979026.1| recombination helicase AddA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502847|ref|YP_003724787.1| ATP-dependent deoxyribonuclease subunit A [Streptococcus pneumoniae TCH8431/19A] gi|225727192|gb|ACO23043.1| recombination helicase AddA [Streptococcus pneumoniae Taiwan19F-14] gi|298238442|gb|ADI69573.1| ATP-dependent deoxyribonuclease, subunit A [Streptococcus pneumoniae TCH8431/19A] Length = 1216 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++V+R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L+E + + + + K++F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKESFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + +S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223 >gi|121998060|ref|YP_001002847.1| exodeoxyribonuclease V subunit beta [Halorhodospira halophila SL1] gi|121589465|gb|ABM62045.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Halorhodospira halophila SL1] Length = 1240 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 87/196 (44%), Gaps = 16/196 (8%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT+ + LRL+L + P +L +T T+AA E+ R+ Sbjct: 19 GSRLIEASAGTGKTYTIAALYLRLVLNHGREAAYGQSLTPPQILVVTFTEAATRELRERI 78 Query: 83 LEIITAWSHLSDE-----ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 + + + L + + + P +++ ++A +L E V TIH Sbjct: 79 RSRLAEAAAAFRDPDQAVELDPFLDGLLREYPQRAERAQAARVLELAAEWMDEAAVATIH 138 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 A+C ++++ ++ S F E +L+ E+ + + + + E + F + + Sbjct: 139 AWCYRMLREHAFDSG--SLFTQDLETDPGELLAESVRDYWRTFVYPLDPEAFQLFRQAVG 196 Query: 198 ISNDEDIETLISDIIS 213 ++ + ++ ++ +I Sbjct: 197 AADPDALQRALARLIG 212 >gi|223932475|ref|ZP_03624477.1| recombination helicase AddA [Streptococcus suis 89/1591] gi|302023673|ref|ZP_07248884.1| ATP-dependent exonuclease subunit A [Streptococcus suis 05HAS68] gi|223898929|gb|EEF65288.1| recombination helicase AddA [Streptococcus suis 89/1591] Length = 1217 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 76/227 (33%), Gaps = 43/227 (18%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++VQR+L L L T T AA E+ Sbjct: 29 TPEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + + DM RHL L + T+ +F Sbjct: 89 ERIEKNLNE------------------TIAETMDMDLRRHLSAQ-LADLTKADIGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ + I+ F I DE + L +E F + LE Sbjct: 130 TQKLVTTYGYSLGISPQFRILQDETEKASLKKEVFDQL---------------FADYLEQ 174 Query: 199 SNDEDIETLISDIISNRTA--------LKLIFFFFSYLWRRKIIEKS 237 + L+ + NR ++ F S K +++ Sbjct: 175 DENGAFRKLVRNFSGNRKDNGGFRQVVYQVHDFSQSTSSPTKWLKEQ 221 >gi|315613168|ref|ZP_07888078.1| ATP-dependent nuclease subunit A [Streptococcus sanguinis ATCC 49296] gi|315314730|gb|EFU62772.1| ATP-dependent nuclease subunit A [Streptococcus sanguinis ATCC 49296] Length = 1217 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 79/223 (35%), Gaps = 31/223 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISQQIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIML-DNNEELKKAFYEILE 197 + + + +I +F I +E + L E +N E+ + Sbjct: 130 TQKFLGKHGYLIDIAPNFRILQNESEQLLLKNEVFHQVFEEHYQGENKEKFSRLVKNFAG 189 Query: 198 ISNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 DE R + K+ F S +K + S Sbjct: 190 RGKDER---------GLRQQVYKIYDFLQSTSSPQKWLSDSFL 223 >gi|258616015|ref|ZP_05713785.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium DO] Length = 706 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 +E ++ ++ + E +L +D + A AGSGKT +L R+ L+ +P +L +T Sbjct: 5 AELLNGMNPRQKEAVLHTD--GPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAIT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV I+ + Sbjct: 63 FTNKAAKEMKERVNAILASGGE-------------------------------------- 84 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ +F I D + L++ K Sbjct: 85 DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 131 >gi|255018267|ref|ZP_05290393.1| ATP-dependent DNA helicase PcrA [Listeria monocytogenes FSL F2-515] Length = 241 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E +D ++ ++ + A AGSGKT +L R+ L+ +P +L +T Sbjct: 7 ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 64 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + Sbjct: 65 TNKAAREMKSRIGNLMGGEAE--------------------------------------S 86 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ +F I D +I+ K Sbjct: 87 IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 131 >gi|225012823|ref|ZP_03703257.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A] gi|225003097|gb|EEG41073.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A] Length = 775 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 78/217 (35%), Gaps = 48/217 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID +++ +++ V A AGSGKT +L R+ L+ + ++L LT T Sbjct: 8 YIDSLNE--AQRGPVLHKEGPLIVIAGAGSGKTRVLTYRIAHLMASGVDSFSILALTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + L Sbjct: 66 KAAREMKARIGALVGEGEAKN-------------------------------------LW 88 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNE----- 186 + T H+ I++Q + S+F I D + S +LI K L + + Sbjct: 89 MGTFHSVFARILRQEADKLGFPSNFTIYDTQDSDRLISSIIKEMGLDKDIYKYKQVRSRI 148 Query: 187 -ELKKAFYEILEISNDEDIETLISDIISNRTALKLIF 222 K + + ND D++ SD +S R + I+ Sbjct: 149 SAFKNSLITVKAYFNDLDLQE--SDTMSKRPQMGEIY 183 >gi|307266291|ref|ZP_07547831.1| UvrD/REP helicase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918669|gb|EFN48903.1| UvrD/REP helicase [Thermoanaerobacter wiegelii Rt8.B1] Length = 440 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 63/168 (37%), Gaps = 42/168 (25%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + + ++ + E ++ ++ + A AGSGKT +L +R+ L+ PS +L + Sbjct: 1 MNSILGSLNDKQREAVMTTE--GPLLILAGAGSGKTRVLTRRIAYLIKEKKVSPSNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV +++ Sbjct: 59 TFTNKAAEEMKTRVEDLLGYI--------------------------------------- 79 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G L V T H+ C I+++ + +F I D K LI+E K Sbjct: 80 GDLWVSTFHSACVRILRRDIDKIGYDRNFVIFDTTDQKALIQECLKEL 127 >gi|159039726|ref|YP_001538979.1| ATP-dependent DNA helicase PcrA [Salinispora arenicola CNS-205] gi|157918561|gb|ABV99988.1| ATP-dependent DNA helicase PcrA [Salinispora arenicola CNS-205] Length = 794 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D ++ ++ + + A AGSGKT +L R+ LL A HP ++ +T T Sbjct: 32 LLDGLNG--PQRDAVTHAGSPLLIVAGAGSGKTRVLTHRIAYLLAARQVHPGEIIAITFT 89 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +++ + L + Sbjct: 90 NKAAGEMKDRVAQLVGPRARL--------------------------------------M 111 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I++ A + S F+I D + S++L++ + Sbjct: 112 WVSTFHSACVRILRAEHEHAGVKSTFSIYDADDSRRLMQLVAREL 156 >gi|84501742|ref|ZP_00999914.1| Putative uvrD/DNA Helicase II [Oceanicola batsensis HTCC2597] gi|84390363|gb|EAQ02922.1| Putative uvrD/DNA Helicase II [Oceanicola batsensis HTCC2597] Length = 862 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 70/193 (36%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 +D ++ + E + A D + A AG+GKT L R++ LL A A P+ +L +T T Sbjct: 27 YLDELNPAQREAVEALD--GPVLMLAGAGTGKTKALTARIVHLLSTARAAPNEILAVTFT 84 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ G Sbjct: 85 NKAAKEMKARVGRMLGE-------------------------------------HVEGMP 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T HA C ++++ + S F I D + +L+++ + + +D + Sbjct: 108 WLGTFHAICVKLLRRHAELVGLKSSFTILDTDDQIRLMKQ----LIRANNIDEKRWPARQ 163 Query: 192 FYEILEISNDEDI 204 I++ + Sbjct: 164 LAGIIDNWKNRAW 176 >gi|323357219|ref|YP_004223615.1| superfamily I DNA and RNA helicase [Microbacterium testaceum StLB037] gi|323273590|dbj|BAJ73735.1| superfamily I DNA and RNA helicase [Microbacterium testaceum StLB037] Length = 826 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 41/167 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68 ++ + ++ + E + ++ + A AGSGKT +L +R+ LL A+PS +L + Sbjct: 32 DADLLQGLNGPQRE--AVTYRGQALLIVAGAGSGKTSVLTRRIASLLRTREAYPSQILAI 89 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV ++I + Sbjct: 90 TFTNKAAGEMRERVHQLIGQKA-------------------------------------- 111 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G+ + T H+ C I+++ + T F I D S+ LI+ K Sbjct: 112 DGMWISTFHSACVRILRREAEQFGFTKAFTIYDSGDSRALIKRLVKE 158 >gi|291483101|dbj|BAI84176.1| ATP-dependent DNA helicase [Bacillus subtilis subsp. natto BEST195] Length = 739 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 41/167 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 ++ + ++ + E + +D + A AGSGKT +L R+ L+ + P +L + Sbjct: 5 SNQLLSGLNPVQQEAVKTTD--GPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAI 62 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV I+ + Sbjct: 63 TFTNKAAREMKERVESILGPGA-------------------------------------- 84 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F+I D +I+ K Sbjct: 85 DDIWISTFHSMCVRILRRDIDRIGINRNFSILDTGDQLSVIKGILKE 131 >gi|190576381|ref|YP_001974226.1| DNA-dependent helicase II [Stenotrophomonas maltophilia K279a] gi|190014303|emb|CAQ47950.1| putative DNA helicase II [Stenotrophomonas maltophilia K279a] Length = 730 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 67/196 (34%), Gaps = 45/196 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67 + S +D ++ + E + A P V A AGSGKT +L R+ L + + Sbjct: 2 DVSHLLDGLNPAQREAVSA--PPGHHLVLAGAGSGKTRVLTHRIAWLHEVEGVPTHGIFA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM HR+ + S Sbjct: 60 VTFTNKAAGEMRHRIDAQLPNGSR------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ + T H +++ +A + F + D + +L K + ++ LD+ + Sbjct: 84 --GMWIGTFHGLANRLLRLHWQDAKLPEGFQVMDSDDQLRL----VKRVVQALELDDGKY 137 Query: 188 LKKAFYEILEISNDED 203 K + DE Sbjct: 138 PAKQIAWWINAQKDEG 153 >gi|146318409|ref|YP_001198121.1| ATP-dependent exoDNAse beta subunit [Streptococcus suis 05ZYH33] gi|146320605|ref|YP_001200316.1| ATP-dependent exoDNAse beta subunit [Streptococcus suis 98HAH33] gi|253750625|ref|YP_003024062.1| exonuclease RexA [Streptococcus suis BM407] gi|251764567|sp|A4W0M7|ADDA_STRS2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|251764570|sp|A4VUD2|ADDA_STRSY RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|145689215|gb|ABP89721.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Streptococcus suis 05ZYH33] gi|145691411|gb|ABP91916.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Streptococcus suis 98HAH33] gi|251819057|emb|CAZ55679.1| exonuclease RexA [Streptococcus suis BM407] gi|292558201|gb|ADE31202.1| putative exonuclease RexA [Streptococcus suis GZ1] Length = 1227 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 81/220 (36%), Gaps = 29/220 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++VQR+L L L T T AA E+ Sbjct: 40 TAEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGIGIDQLFISTFTVKAAGELK 99 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + + +DM RHL L + T+ +F Sbjct: 100 ERIEKKLNE------------------TIAETTDMELRRHLSAQ-LADLTKADIGTMDSF 140 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE- 197 + ++ + I+ F I DE + L +E A + ++ AF +++ Sbjct: 141 TQKLVTTYGYSLGISPQFRILQDETEKASLKKEVFDQLFADYLEEDE---NGAFRKLVRN 197 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 S + + ++ ++ F S K +++ Sbjct: 198 FSGNRKDNSGFRQVV-----YQVHDFSQSTSSPTKWLKEQ 232 >gi|15613211|ref|NP_241514.1| ATP-dependent DNA helicase [Bacillus halodurans C-125] gi|10173262|dbj|BAB04367.1| ATP-dependent DNA helicase [Bacillus halodurans C-125] Length = 747 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 54/161 (33%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L ++ + A AGSGKT +L R+ LL P +L +T T A Sbjct: 17 LAGLNDRQREAVKHTEGPLLLMAGAGSGKTRVLTHRIAYLLREKGVAPWNVLAITFTNKA 76 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +++ + + + Sbjct: 77 AREMKDRVAQLVGPIA--------------------------------------DDIWIS 98 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ + +F I D +I++ K+ Sbjct: 99 TFHSMCVRILRRDIDRIGYSRNFTILDSTDQLSVIKQILKN 139 >gi|321314390|ref|YP_004206677.1| ATP-dependent DNA helicase [Bacillus subtilis BSn5] gi|320020664|gb|ADV95650.1| ATP-dependent DNA helicase [Bacillus subtilis BSn5] Length = 739 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 41/167 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 ++ + ++ + E + +D + A AGSGKT +L R+ L+ + P +L + Sbjct: 5 SNQLLSGLNPVQQEAVKTTD--GPLLLMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAI 62 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV I+ + Sbjct: 63 TFTNKAAREMKERVESILGPGA-------------------------------------- 84 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F+I D +I+ K Sbjct: 85 DDIWISTFHSMCVRILRRDIDRIGINRNFSILDTADQLSVIKGILKE 131 >gi|314964915|gb|EFT09014.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL082PA2] gi|315103904|gb|EFT75880.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA2] gi|327325604|gb|EGE67403.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL103PA1] Length = 810 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 40/163 (24%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL++ Q A V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 40 DLLADLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV++++ + + Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V T H+ I++ I+ +F+I D+ +K+LI + Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164 >gi|302874255|ref|YP_003842888.1| UvrD/REP helicase [Clostridium cellulovorans 743B] gi|307689481|ref|ZP_07631927.1| UvrD/REP helicase [Clostridium cellulovorans 743B] gi|302577112|gb|ADL51124.1| UvrD/REP helicase [Clostridium cellulovorans 743B] Length = 753 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 58/165 (35%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL EQ A+ + A AGSGKT +L R+ ++ + S +L +T T Sbjct: 1 MDLRKLLNQEQYKAATTIEGPLLILAGAGSGKTRVLTYRIAHMIKELGIYSSQILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ I+ + + Sbjct: 61 NKAAQEMRERIRGIVG--------------------------------------DVVDNM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + +F I D K L+++ K Sbjct: 83 WVSTFHSSCVRILRREIDKIGYNKNFTIYDTYDQKTLLKQCMKEL 127 >gi|307067686|ref|YP_003876652.1| ATP-dependent exoDNAse (exonuclease V) subunit beta [Streptococcus pneumoniae AP200] gi|306409223|gb|ADM84650.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Streptococcus pneumoniae AP200] Length = 1216 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++V+R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L+E + + + + K++F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKESFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + +S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223 >gi|224282901|ref|ZP_03646223.1| UvrD/REP helicase [Bifidobacterium bifidum NCIMB 41171] gi|313140060|ref|ZP_07802253.1| ATP-dependent DNA helicase PcrA [Bifidobacterium bifidum NCIMB 41171] gi|313132570|gb|EFR50187.1| ATP-dependent DNA helicase PcrA [Bifidobacterium bifidum NCIMB 41171] Length = 885 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 40/158 (25%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ +Q A + A AGSGKT +L +R+ +L A PS +L +T T Sbjct: 14 ELVGDLNPQQAEAVQYRGPALLIGAGAGSGKTRVLTRRIAWILTQFGAWPSQILAITFTN 73 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ +I + + Sbjct: 74 KAAAEMRERLEGLIGPVAQ--------------------------------------RMW 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 V T H+ C I+++ + S F+I D ++L++ Sbjct: 96 VSTFHSACVRILRRDGQSIGLASGFSIYDTADCERLVK 133 >gi|205372453|ref|ZP_03225266.1| PcrA [Bacillus coahuilensis m4-4] Length = 739 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 65/189 (34%), Gaps = 44/189 (23%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L++ EQ A + A AGSGKT +L R+ L++ P +L +T T Sbjct: 8 LLNGMNPEQKKAVQTTDGPLLLMAGAGSGKTRVLTHRIAYLMVEKQIAPYNILAITFTNK 67 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ +I+ + + V Sbjct: 68 AAREMKERISKILGGAAE--------------------------------------DIWV 89 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ C I+++ +F I D + KS L +D + +A Sbjct: 90 STFHSMCVRILRRDIDRMGYNRNFTILDSGDQ----QSVVKSILKDKNIDPKKFDPRAIL 145 Query: 194 EILEISNDE 202 I+ + +E Sbjct: 146 GIISNAKNE 154 >gi|163746115|ref|ZP_02153474.1| DNA helicase II, putative [Oceanibulbus indolifex HEL-45] gi|161380860|gb|EDQ05270.1| DNA helicase II, putative [Oceanibulbus indolifex HEL-45] Length = 805 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 70/191 (36%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 + Q A + + A AG+GKT L R++ LL A P+ +L +T T Sbjct: 27 YLEGLNPAQRAAVETMDGPVLMLAGAGTGKTRALTARIVHLLNTGRARPNEVLAVTFTNK 86 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM +RV +++ G + Sbjct: 87 AAREMKNRVGQMLGQQVE-------------------------------------GMPWL 109 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T HA C ++++ + S+F I D + +L+++ +A+ +D+ + Sbjct: 110 GTFHAICVKLLRRHAELVGLKSNFTILDTDDQLRLLKQ----LVAAEGIDDKRWPARMLA 165 Query: 194 EILEISNDEDI 204 +++ + + Sbjct: 166 GLIDGWKNRAL 176 >gi|330832698|ref|YP_004401523.1| ATP-dependent exonuclease subunit A [Streptococcus suis ST3] gi|329306921|gb|AEB81337.1| ATP-dependent exonuclease subunit A [Streptococcus suis ST3] Length = 1217 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 76/227 (33%), Gaps = 43/227 (18%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++VQR+L L L T T AA E+ Sbjct: 29 TPEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + + DM RHL L + T+ +F Sbjct: 89 ERIEKNLNE------------------TIAETMDMDLRRHLSAQ-LADLTKADIGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ + I+ F I DE + L +E F + LE Sbjct: 130 TQKLVTTYGYSLGISPQFRILQDETEKASLKKEVFDQL---------------FADYLEQ 174 Query: 199 SNDEDIETLISDIISNRTA--------LKLIFFFFSYLWRRKIIEKS 237 + L+ + NR ++ F S K +++ Sbjct: 175 DENGAFRKLVRNFSGNRKDNGGFRQVVYQVHDFSQSTSSPTKWLKEQ 221 >gi|269215900|ref|ZP_06159754.1| ATP-dependent DNA helicase [Slackia exigua ATCC 700122] gi|269130850|gb|EEZ61926.1| ATP-dependent DNA helicase [Slackia exigua ATCC 700122] Length = 1239 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 71/209 (33%), Gaps = 43/209 (20%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCL 68 + +++ +V+A AGSGKT L QR+ LL + ++ + Sbjct: 5 AFNPDQRVCVETLDAPLFVAAGAGSGKTFTLTQRIAWALLDGSGSDGGPFASSIDEIMAI 64 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA+E+ RV + A E L+ E K+ Sbjct: 65 TFTDKAASEIKARVKSTLRA------EGLAEESLKV------------------------ 94 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + TIH C ++++ LE I F +A + + +A + L + Sbjct: 95 DSAWISTIHGACARVLREHALELGIDPDFQMASDGFVADALAQAVEEVLIGHEEGSANGS 154 Query: 189 KKAFYEIL----EISNDEDIETLISDIIS 213 A + +E ++ DI Sbjct: 155 VDALFAAYPPRSTGHGGTSVEDMLMDIAQ 183 >gi|7329749|emb|CAB82770.1| DNA helicase II [Prochlorococcus marinus str. PAC2] Length = 624 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 20/177 (11%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 S I L +S+ L V A AGSGKT L R+ L++ PS++L +T Sbjct: 4 SNNIFLNGLNQSQSLAVDHFDGPLLVIAGAGSGKTRALTHRIAHLIIEYKVDPSSILAVT 63 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETP 128 T AA EM R+ + +L+ + I +KP + ++++ R + I Sbjct: 64 FTNKAAREMKDRL-----------ELLLAKRLAIITHEKPWSALEVAEQRQIRNRIYREI 112 Query: 129 GG-LKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178 L + T HA +++ +F + T F+I DE ++ LI+E L Sbjct: 113 SRELWIGTFHALFARLLRFDIDKFKDPEGLTWTRQFSIYDETDAQSLIKEIVTQDLQ 169 >gi|331702041|ref|YP_004399000.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri NRRL B-30929] gi|329129384|gb|AEB73937.1| ATP-dependent DNA helicase PcrA [Lactobacillus buchneri NRRL B-30929] Length = 744 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 63/188 (33%), Gaps = 43/188 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L K ++ + A AGSGKT +L R+ ++ N P +L +T T A Sbjct: 7 LAGLNKDQKDAVIHTEGPVLIMAGAGSGKTRVLTHRIAYIIEHNHIMPWRILAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +++ + V Sbjct: 67 AREMRERVSKLLGEGG--------------------------------------NDVWVS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HA C I+++ F IAD + + L K L + +D + +A Sbjct: 89 TFHALCVRILRRHIDLLGYNKAFTIADTSEQRTL----VKRVLRDLNIDPKKFDPRAVLS 144 Query: 195 ILEISNDE 202 + + ++ Sbjct: 145 AISNAKND 152 >gi|314924241|gb|EFS88072.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL001PA1] Length = 810 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 40/163 (24%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL++ Q A V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 40 DLLADLNEPQRDAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV++++ + + Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V T H+ I++ I+ +F+I D+ +K+LI + Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164 >gi|16800937|ref|NP_471205.1| ATP-dependent DNA helicase [Listeria innocua Clip11262] gi|16414372|emb|CAC97101.1| ATP-dependent DNA helicase [Listeria innocua Clip11262] Length = 731 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E +D ++ ++ + A AGSGKT +L R+ L+ +P +L +T Sbjct: 5 ELVDGLN--PEQRKAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 62 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + Sbjct: 63 TNKAAREMKSRIGNLMGGEAE--------------------------------------S 84 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ +F I D +I+ K Sbjct: 85 IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 129 >gi|228476304|ref|ZP_04061005.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis SK119] gi|228269587|gb|EEK11093.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis SK119] Length = 730 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 56/159 (35%), Gaps = 39/159 (24%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76 + K + + A AGSGKT +L R+ LL + P +L +T T AA Sbjct: 7 NMNKEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV ++ + + + + T Sbjct: 67 EMKERVEHLVGEEAQV--------------------------------------IWMSTF 88 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 H+ C I+++ I +F I D K +I++ K+ Sbjct: 89 HSMCVKILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127 >gi|114322010|ref|YP_743693.1| ATP-dependent DNA helicase UvrD [Alkalilimnicola ehrlichii MLHE-1] gi|114228404|gb|ABI58203.1| ATP-dependent DNA helicase UvrD [Alkalilimnicola ehrlichii MLHE-1] Length = 725 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 66/167 (39%), Gaps = 41/167 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S+ I ++ + E + A+ + V A AGSGKT +L +R L+ + A P ++ Sbjct: 6 DVSDLIADLNDAQREAVCAA--LGRSLVLAGAGSGKTRVLTRRAAWLVRVEGASPFGIMA 63 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM HR+ E++ + Sbjct: 64 VTFTNKAAAEMRHRIGELLGIRT------------------------------------- 86 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 G+ V T H +++ +A + F I D + +LI+ + Sbjct: 87 -AGMWVGTFHGLSHRLLRMHAADAGLPETFQILDSDDQLRLIKRVMR 132 >gi|56751936|ref|YP_172637.1| ATP-dependent helicase PcrA [Synechococcus elongatus PCC 6301] gi|56686895|dbj|BAD80117.1| ATP-dependent helicase PcrA [Synechococcus elongatus PCC 6301] Length = 794 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 23/174 (13%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D +SQ + Q A + + V A AGSGKT L R+ LL + P +L +T T Sbjct: 4 DFLSQLNTSQRRAVEHYSGPLLVVAGAGSGKTRALTFRIAHLLRQHRVGPENILAVTFTN 63 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL--ETPGG 130 AA EM R+ + + ++ ++Q +P + + L + + E Sbjct: 64 KAAKEMKERLERLF-----------AQQLAELQYGQPFTTLREIEKTQLRSRVYREVTKD 112 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSH-------FAIADEEQSKKLIEEAKKSTL 177 L + T HA C I++ F ++ + F+I DE + LI+E + L Sbjct: 113 LWIGTFHAICARILR-FDIDKYCDPNGRRWTKQFSIFDENDVQGLIKEIVGNQL 165 >gi|258647140|ref|ZP_05734609.1| ATP-dependent DNA helicase PcrA [Prevotella tannerae ATCC 51259] gi|260853104|gb|EEX72973.1| ATP-dependent DNA helicase PcrA [Prevotella tannerae ATCC 51259] Length = 794 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 39/162 (24%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 D +++++ + + D + + A AGSGKT +L +V LL P +L LT T A Sbjct: 4 DFLNESQRQAVQYCD--GPSLIIAGAGSGKTRVLTYKVAYLLQNGYQPWEILALTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ +++ + L Sbjct: 62 AREMRERIAQLVEPAAV-------------------------------------AMLWAG 84 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ + S F+I D +K L++ + Sbjct: 85 TFHSIFARILRIEHAALGLPSTFSIYDAADAKSLVKSIIREL 126 >gi|118466048|ref|YP_880325.1| ATP-dependent DNA helicase PcrA [Mycobacterium avium 104] gi|118167335|gb|ABK68232.1| ATP-dependent DNA helicase PcrA [Mycobacterium avium 104] Length = 774 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 47/216 (21%), Positives = 83/216 (38%), Gaps = 52/216 (24%) Query: 2 IYHNSFQEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-N 59 ++ + SE L+ +Q A S + A AGSGKT +L +RV L+ A Sbjct: 3 VHVTDAKPVSEAEQLLEGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRVAYLIAARG 62 Query: 60 AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119 +L +T T AAAEM RV+ ++ ++AR Sbjct: 63 VGVGQVLAITFTNKAAAEMRERVVRLVG---------------------------NRAR- 94 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKS--- 175 + V T H+ C I++ + S+F+I D + S++L++ + Sbjct: 95 ----------AMWVSTFHSTCVRILRNQASLIEGLNSNFSIYDADDSRRLLQMIGRDMGL 144 Query: 176 --------TLASIMLDNNEELKKAFYEILEISNDED 203 LA+ + + EL + +++D D Sbjct: 145 DIKRYSPRLLANAISNLKNELIDPAAAVANLTDDSD 180 >gi|310644241|ref|YP_003949000.1| ATP-dependent DNA helicase pcra [Paenibacillus polymyxa SC2] gi|309249192|gb|ADO58759.1| ATP-dependent DNA helicase PcrA [Paenibacillus polymyxa SC2] Length = 774 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 72/192 (37%), Gaps = 45/192 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 E + ++Q + + + A D + A AGSGKT +L R+ L+ P +L +T Sbjct: 8 EAVARLNQPQRQAVEAVD--GPLLIMAGAGSGKTRVLTHRIAYLIATRKTAPWGILAITF 65 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV ++I Sbjct: 66 TNKAAREMQDRVSKLIGPQGR--------------------------------------D 87 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + V T H+ C I+++ TS+F+I D +I +S + + +D + K Sbjct: 88 VWVSTFHSMCVRILRRDIERIGFTSNFSILDSTDQLSVI----RSCMKDLNIDTKKFEPK 143 Query: 191 AFYEILEISNDE 202 A ++ + +E Sbjct: 144 AVQSMMSTAKNE 155 >gi|238854177|ref|ZP_04644524.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 202-4] gi|238833253|gb|EEQ25543.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 202-4] Length = 747 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 39/168 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 SE L ++ V A AGSGKT +L +R+ L+ P +L + Sbjct: 1 MSEETILAGLNPQQKKAVQCTEGPLLVVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAI 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV +++ + Sbjct: 61 TFTNKAATEMKERVQKLLGPAA-------------------------------------- 82 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T HA C I+++ + +++F+IAD + LI+ +K Sbjct: 83 DSVWMSTFHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDL 130 >gi|221632334|ref|YP_002521555.1| ATP-dependent DNA helicase pcrA [Thermomicrobium roseum DSM 5159] gi|221156871|gb|ACM05998.1| ATP-dependent DNA helicase pcrA [Thermomicrobium roseum DSM 5159] Length = 771 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 80/225 (35%), Gaps = 46/225 (20%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 LI + + + V A GSGKT +L RV L+ + A P ++ +T T A Sbjct: 46 LIGLDADQCVAVTTTEGPVLVVAGPGSGKTRVLTHRVAYLIGSGRARPWQIVAVTFTNKA 105 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E+ R+ ++ E+ ++ Sbjct: 106 AREIRERLGGLLGT-------------------------------------ESAQLVQAG 128 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK-AFY 193 T H+ C I+++ + F I DEE L+++A L + LD + Sbjct: 129 TFHSLCVRILRRDGYRIGLEPAFTIYDEEDQLALVKQA----LRDLGLDPQRFSPRMLLG 184 Query: 194 EILEISNDEDIETLISDIISNRT---ALKLIFFFFSYLWRRKIIE 235 + ND+ + + + + A ++ + YL R + ++ Sbjct: 185 RLSRAKNDQHSPSDLQSMAQSYWDEVAARVYERYAQYLQRAQAVD 229 >gi|148998405|ref|ZP_01825847.1| exonuclease RexA [Streptococcus pneumoniae SP11-BS70] gi|168576141|ref|ZP_02722035.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|168577182|ref|ZP_02722997.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|168577235|ref|ZP_02723036.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|168577251|ref|ZP_02723047.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|194397993|ref|YP_002037761.1| exonuclease RexA [Streptococcus pneumoniae G54] gi|251764542|sp|B5E4P5|ADDA_STRP4 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|147755802|gb|EDK62847.1| exonuclease RexA [Streptococcus pneumoniae SP11-BS70] gi|183577186|gb|EDT97714.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|183577191|gb|EDT97719.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|183577238|gb|EDT97766.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|183577934|gb|EDT98462.1| recombination helicase AddA [Streptococcus pneumoniae MLV-016] gi|194357660|gb|ACF56108.1| exonuclease RexA [Streptococcus pneumoniae G54] Length = 1216 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++V+R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L+E + + + + K++F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKESFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + +S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223 >gi|116334214|ref|YP_795741.1| superfamily I DNA/RNA helicase [Lactobacillus brevis ATCC 367] gi|116099561|gb|ABJ64710.1| ATP-dependent DNA helicase PcrA [Lactobacillus brevis ATCC 367] Length = 750 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70 E + ++ ++E +L ++ V A AGSGKT +L RV L+ N P +L +T Sbjct: 5 ELLTGMNDKQTEAVLQTE--GPLLVLAGAGSGKTRVLTHRVAYLIEHNNVMPWRILAITF 62 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV++++ Sbjct: 63 TNKAAKEMRERVIKLLGPDG--------------------------------------ND 84 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + V T HA C I+++ + F IAD + + LI+ + Sbjct: 85 VWVSTFHALCVRILRRDADKLGYNRAFTIADPGEQRTLIKRVLQQ 129 >gi|95930575|ref|ZP_01313310.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684] gi|95133410|gb|EAT15074.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684] Length = 747 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 53/159 (33%), Gaps = 41/159 (25%) Query: 20 TKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +Q+ A + P + A AGSGKT L RV+ L+ P +L +T T AA E Sbjct: 8 LNPQQIEAVEHPGGPLLILAGAGSGKTSTLTGRVIHLIRQQGVPPWRILAVTFTNKAAKE 67 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ + V T H Sbjct: 68 MKERIERALPEGEMP---------------------------------------WVATFH 88 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + C I+++ + F I D++ +L++ K Sbjct: 89 STCVRILRRDISALGFDTSFTIYDDQDQDRLLKNILKEL 127 >gi|319399870|gb|EFV88117.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis FRI909] Length = 729 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 55/159 (34%), Gaps = 39/159 (24%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76 + + + A AGSGKT +L R+ LL + P +L +T T AA Sbjct: 7 NMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV ++ + + + + T Sbjct: 67 EMKARVEHLVGEEAQV--------------------------------------IWMSTF 88 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 H+ C I+++ I +F I D K +I+E KS Sbjct: 89 HSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKEVLKS 127 >gi|314936042|ref|ZP_07843391.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis subsp. hominis C80] gi|313655859|gb|EFS19602.1| ATP-dependent DNA helicase PcrA [Staphylococcus hominis subsp. hominis C80] Length = 730 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 56/159 (35%), Gaps = 39/159 (24%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76 + K + + A AGSGKT +L R+ LL + P +L +T T AA Sbjct: 7 NMNKEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV ++ + + + + T Sbjct: 67 EMKERVEHLVGEEAQV--------------------------------------IWMSTF 88 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 H+ C I+++ I +F I D K +I++ K+ Sbjct: 89 HSMCVKILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127 >gi|253751554|ref|YP_003024695.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis SC84] gi|253753455|ref|YP_003026596.1| ATP-dependent exonuclease subunit A [Streptococcus suis P1/7] gi|251815843|emb|CAZ51451.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis SC84] gi|251819701|emb|CAR45515.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis P1/7] gi|319757986|gb|ADV69928.1| putative ATP-dependent exonuclease subunit A [Streptococcus suis JS14] Length = 1216 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 81/220 (36%), Gaps = 29/220 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++VQR+L L L T T AA E+ Sbjct: 29 TAEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGIGIDQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + + +DM RHL L + T+ +F Sbjct: 89 ERIEKKLNE------------------TIAETTDMELRRHLSAQ-LADLTKADIGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE- 197 + ++ + I+ F I DE + L +E A + ++ AF +++ Sbjct: 130 TQKLVTTYGYSLGISPQFRILQDETEKASLKKEVFDQLFADYLEEDE---NGAFRKLVRN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 S + + ++ ++ F S K +++ Sbjct: 187 FSGNRKDNSGFRQVV-----YQVHDFSQSTSSPTKWLKEQ 221 >gi|154174808|ref|YP_001407581.1| putative recombination protein RecB [Campylobacter curvus 525.92] gi|112803782|gb|EAU01126.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter curvus 525.92] Length = 933 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 13/180 (7%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 R + A+AGSGKT L R + L+L+ A+ + ++ LT TK AA EM RV+E Sbjct: 3 RYLALKASAGSGKTFALSVRFIALILSGANIAEIVALTFTKKAANEMKERVVETF----- 57 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 L+ E +E+ I+ D A LK+ T +F I++QF L Sbjct: 58 LNLEKKPSELAAIREILELGEDKILALRDERMADFLQSDLKIGTFDSFFTGILRQFSLNL 117 Query: 152 NITSHFAIADE---EQSKKLIEEAKKS-----TLASIMLDNNEELKKAFYEILEISNDED 203 +++ F+++ + Q +K +E+ + +LA ++ + F + + D Sbjct: 118 GLSADFSVSSDLTNLQRQKFVEKISRDPSLLRSLAEFIVAAEKSQNSFFETLERFYENFD 177 >gi|298492943|ref|YP_003723120.1| ATP-dependent DNA helicase PcrA ['Nostoc azollae' 0708] gi|298234861|gb|ADI65997.1| ATP-dependent DNA helicase PcrA ['Nostoc azollae' 0708] Length = 776 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 80/199 (40%), Gaps = 20/199 (10%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ID +S Q A + V A AGSGKT L R+ L+L + +P ++ +T T Sbjct: 5 IDFLSHLNPSQRQAVEHYCGPLLVVAGAGSGKTRALTYRIANLILKHRVNPENIIAVTFT 64 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ + + L + K+ + K++ TI + + Sbjct: 65 NKAAREMKDRIQRLFSEQLALKEYG-----QKLDSLPEYEQTQLKSKVYRTTIKD----M 115 Query: 132 KVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 T H+ I++ ++ E +F+I DE + LI+E + LD+ Sbjct: 116 WCGTFHSLFSRILRYDIEKYQDEKGRRWNKNFSIFDESDVQSLIKEI---VTKDLNLDSK 172 Query: 186 EELKKAFYEILEISNDEDI 204 + K+ + + ++ Sbjct: 173 KFEPKSVRYAISNAKNQGF 191 >gi|15128573|dbj|BAB62752.1| putative ATP-dependent exonuclease subunit A [Streptococcus criceti] Length = 495 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 85/233 (36%), Gaps = 33/233 (14%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 S+ + + +T + + VSA+AGSGKT ++V+R++ +L + S L T Sbjct: 23 SQAEERLPRTPEQIEAIYSNGTNVLVSASAGSGKTFVMVERIIDMLKRGVNISQLFISTF 82 Query: 71 TKAAAAEMSHRVLEII-TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA E+ R+ + + + D+ L ++ G N Sbjct: 83 TVKAAGELKERIEDKLIKEIAKTQDQALKQHLSAQLGDIQN------------------- 123 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T+ AF + ++ + ++ +F I D+ + L E S M + + Sbjct: 124 -ADIGTMDAFAQKLVNTYGYSLGVSPNFRIMQDKSEQDILKNEVYGDLFTSYMTGPDSHI 182 Query: 189 KKAFYEIL--EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 K + + ++ + + F S + +E++ Sbjct: 183 FKQTVRNFTGQGKDSTGFRQVVYAVHA---------FSQSTADPKAWLEETFL 226 >gi|294807341|ref|ZP_06766153.1| putative ATP-dependent helicase PcrA [Bacteroides xylanisolvens SD CC 1b] gi|294445471|gb|EFG14126.1| putative ATP-dependent helicase PcrA [Bacteroides xylanisolvens SD CC 1b] Length = 614 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 57/165 (34%), Gaps = 40/165 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHT 71 + I + Q A + V A AGSGKT +L ++ LL +P +L LT T Sbjct: 4 NYIDELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ + M +AR+L Sbjct: 64 NKAAREMKERIARQVG--------------------------MERARYL----------- 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ TS F I D SK L+ K Sbjct: 87 WMGTFHSIFSRILRAEAQYIGFTSQFTIYDTADSKSLLRSIIKEM 131 >gi|315930994|gb|EFV09969.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp. jejuni 327] Length = 705 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 7/178 (3%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + L+L A + +L LT TK AA EM R++E + Sbjct: 8 LALEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKEN 67 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 E+ K+ GK + + L T LK+ T AF I++ F L + Sbjct: 68 KTSECNELCKLLGKDKEELISLRDVKK-EEFLRT--ELKISTFDAFFGKILRVFALNLGL 124 Query: 154 TSHFAIADEE-QSKKLI---EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL 207 +S F +++E +++ + + + ++ +E + F E+ + + + L Sbjct: 125 SSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLVDEKENFFNELEKFYENAYFQNL 182 >gi|315093785|gb|EFT65761.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL060PA1] Length = 810 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 40/163 (24%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL++ Q A V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 40 DLLADLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV++++ + + Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V T H+ I++ I+ +F+I D+ +K+LI + Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164 >gi|310287344|ref|YP_003938602.1| ATP-dependent DNA helicase pcrA [Bifidobacterium bifidum S17] gi|309251280|gb|ADO53028.1| ATP-dependent DNA helicase pcrA [Bifidobacterium bifidum S17] Length = 885 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 40/158 (25%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ +Q A + A AGSGKT +L +R+ +L A PS +L +T T Sbjct: 14 ELVGDLNPQQAEAVQYRGPALLIGAGAGSGKTRVLTRRIAWILTQFGAWPSQILAITFTN 73 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ +I + + Sbjct: 74 KAAAEMRERLEGLIGPVAQ--------------------------------------RMW 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 V T H+ C I+++ + S F+I D ++L++ Sbjct: 96 VSTFHSACVRILRRDGQSIGLASGFSIYDTADCERLVK 133 >gi|289435096|ref|YP_003464968.1| DNA helicase, ATP-dependent [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171340|emb|CBH27882.1| DNA helicase, ATP-dependent [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 731 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E +D ++ ++ + A AGSGKT +L R+ L+ +P +L +T Sbjct: 5 ELVDGLN--PEQKRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITF 62 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + Sbjct: 63 TNKAAREMKSRIGNLMGGEAE--------------------------------------S 84 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ +F I D +I+ K Sbjct: 85 IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 129 >gi|227889452|ref|ZP_04007257.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii ATCC 33200] gi|227849930|gb|EEJ60016.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii ATCC 33200] Length = 772 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 84/230 (36%), Gaps = 41/230 (17%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66 + SE L ++ V A AGSGKT +L +R+ L+ P +L Sbjct: 23 EAMSEETILAGLNPQQKKAVQCTEGPLLVVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVL 82 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM RV +++ + Sbjct: 83 AITFTNKAATEMKERVQKLLGPAA------------------------------------ 106 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNN 185 + + T HA C I+++ + +++F+IAD + LI+ +K + M D Sbjct: 107 --DSVWMSTFHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDLNINPKMYDPK 164 Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 L ++ +D + + + TA ++ + L R KI++ Sbjct: 165 AILGAISNGKNDLLTPKDFKDQAASMFEKVTA-QVYSEYQHRLKRDKIMD 213 >gi|242371786|ref|ZP_04817360.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis M23864:W1] gi|242350487|gb|EES42088.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis M23864:W1] Length = 729 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 39/159 (24%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76 + + + A AGSGKT +L R+ LL + P +L +T T AA Sbjct: 7 NMNTEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV +++ + + + + T Sbjct: 67 EMKQRVEQLVGEEAQV--------------------------------------IWMSTF 88 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 H+ C I+++ I +F I D K +I++ K+ Sbjct: 89 HSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127 >gi|153951355|ref|YP_001398782.1| ATP-dependent DNA helicase UvrD [Campylobacter jejuni subsp. doylei 269.97] gi|152938801|gb|ABS43542.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. doylei 269.97] Length = 921 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 5/130 (3%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + L+L A + +L LT TK AA EM R++EI + Sbjct: 8 LALEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIEIFLNLEKEN 67 Query: 94 DEILSAEITKIQGKKPNKS-DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 E+ K+ GK + + A+ L T LK+ T AF I++ F L Sbjct: 68 KTSECNELCKLLGKDKEELISLRNAKK--EEFLRT--ELKISTFDAFFGKILRVFALNLG 123 Query: 153 ITSHFAIADE 162 ++S F +++E Sbjct: 124 LSSDFTMSEE 133 >gi|254686688|ref|ZP_05150546.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. CNEVA-9066] gi|254724764|ref|ZP_05186547.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. A1055] Length = 747 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L +Q + A AGSGKT +L R+ LL P +L +T T A Sbjct: 8 LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ + + + Sbjct: 68 AREMRERIDTLVGPEAE--------------------------------------DIWIS 89 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D ++++ K Sbjct: 90 TFHSMCVRILRRDIDHIGINRNFTILDSGDQLTVVKKIMKE 130 >gi|89896637|ref|YP_520124.1| hypothetical protein DSY3891 [Desulfitobacterium hafniense Y51] gi|89336085|dbj|BAE85680.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 760 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 78/234 (33%), Gaps = 48/234 (20%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 SE L ++ + A AGSGKT +L R+ L+ P +L +T Sbjct: 4 SEMYRLEDLNPVQRQAVEHREGPLLILAGAGSGKTRVLTYRIAHLIAQGVEPWHILAITF 63 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV ++ + G Sbjct: 64 TNKAAQEMRDRVYSLVGSEGR--------------------------------------G 85 Query: 131 LKVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 L V T H+ C I++ + + F I D LI KS + + LD + Sbjct: 86 LWVATFHSACVRILRSEIGYLPGYSRSFVIYDSGDQLALI----KSCMKELNLDEKKFAP 141 Query: 190 KAFYEILEISNDEDIETLISDIISNR--TALKLIFFFFSYLWRRKIIEKSLWSI 241 +A ++ + ++ L + S R + L+++K++ + Sbjct: 142 RAIEAVISDAKNK---LLTPEDFSRRAKDYFEQKAERVYELYQKKLLANNALDF 192 >gi|222086413|ref|YP_002544947.1| DNA helicase II protein [Agrobacterium radiobacter K84] gi|221723861|gb|ACM27017.1| DNA helicase II protein [Agrobacterium radiobacter K84] Length = 828 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 72/192 (37%), Gaps = 43/192 (22%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D ++ EQ A + V A AG+GKT +L R+ +L N A PS +L +T T Sbjct: 51 DYLTGLNPEQTEAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSTNRAFPSQILAVTFTN 110 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ G Sbjct: 111 KAAREMKERVALLVGGAVE-------------------------------------GMPW 133 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ ++++ ++S F I D + +LI++ + + LD+ K F Sbjct: 134 LGTFHSIGVKLLRRHSELVGLSSSFTILDTDDVIRLIKQ----LIQAEGLDDKRWPAKQF 189 Query: 193 YEILEISNDEDI 204 +++ ++ + Sbjct: 190 AGMIDTWKNKGL 201 >gi|196250519|ref|ZP_03149210.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. G11MC16] gi|196210009|gb|EDY04777.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. G11MC16] Length = 724 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 54/161 (33%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L K +Q + A AGSGKT +L R+ L+ + P +L +T T A Sbjct: 9 LAHLNKEQQEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ + + + Sbjct: 69 AREMRERVQALLGGAAE--------------------------------------DVWIS 90 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F+I D +I+ K Sbjct: 91 TFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVIKAILKE 131 >gi|293569138|ref|ZP_06680445.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1071] gi|291588185|gb|EFF20026.1| ATP-dependent DNA helicase PcrA [Enterococcus faecium E1071] Length = 744 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 39/168 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 S+ + L ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 2 SSKAVLLNGMNPRQKEAVLHTDGPLLLMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAI 61 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV I+ + Sbjct: 62 TFTNKAAKEMKERVNAILASGGE------------------------------------- 84 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ +F I D + L++ K Sbjct: 85 -DVWVSTFHSMCVRILRRDVDFIGYNRNFTIIDSSEQLTLMKRILKEL 131 >gi|282877529|ref|ZP_06286347.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310] gi|281300353|gb|EFA92704.1| UvrD/REP helicase [Prevotella buccalis ATCC 35310] Length = 1082 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 86/178 (48%), Gaps = 9/178 (5%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L ++ ++ N +L +T T A EM R+L + +H + Sbjct: 19 ASAGSGKTFTLATEYMKRVIENPDAYRSILAVTFTNKATEEMKMRILSQLYGIAHGLPDS 78 Query: 97 LSAEITKIQGKKPNK--SDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + + KIQ P +A+ L +L +V+TI AF +++++ E ++T Sbjct: 79 -DSYLHKIQESIPFPCVKIRERAQKALGQLLHNYNYFRVETIDAFFQSVLRNLARELDLT 137 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS-NDEDIETLISDI 211 ++ I E + K++ E+A + + N++L + YE + + +D+ +I +I Sbjct: 138 ANLRI--ELRDKQVKEKAVDELIEEL--QPNDKLLRWIYEYIRQNISDDKSWNVIGEI 191 >gi|268319977|ref|YP_003293633.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii FI9785] gi|262398352|emb|CAX67366.1| ATP-dependent DNA helicase PcrA [Lactobacillus johnsonii FI9785] Length = 748 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 39/168 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 SE L ++ V A AGSGKT +L +R+ L+ P +L + Sbjct: 1 MSEETILAGLNPQQKKAVQCTEGPLLVVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAI 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV +++ + Sbjct: 61 TFTNKAATEMKERVQKLLGPAA-------------------------------------- 82 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T HA C I+++ + +++F+IAD + LI+ +K Sbjct: 83 DSVWMSTFHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDL 130 >gi|255526474|ref|ZP_05393385.1| UvrD/REP helicase [Clostridium carboxidivorans P7] gi|296184847|ref|ZP_06853258.1| putative ATP-dependent DNA helicase PcrA [Clostridium carboxidivorans P7] gi|255509856|gb|EET86185.1| UvrD/REP helicase [Clostridium carboxidivorans P7] gi|296050629|gb|EFG90052.1| putative ATP-dependent DNA helicase PcrA [Clostridium carboxidivorans P7] Length = 754 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL EQ A + A AGSGKT +L R+ ++ N +PS +L +T T Sbjct: 1 MDLKMLLNKEQYEAAVQVNGPLLILAGAGSGKTRVLTYRIAHMINDLNIYPSKILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ + + Sbjct: 61 NKAAGEMKDRVRSLVGNEA--------------------------------------DNM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ C I+++ + +FAI D K LI++ Sbjct: 83 WVSTFHSSCVRILRREIDKLGYNKNFAIYDTYDQKILIKQCMDEL 127 >gi|49474442|ref|YP_032484.1| DNA helicase II [Bartonella quintana str. Toulouse] gi|49239946|emb|CAF26350.1| DNA helicase II [Bartonella quintana str. Toulouse] Length = 776 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 69/186 (37%), Gaps = 42/186 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 +Q + V A AG+GKT +L R+ +L + A P +L +T T AA EM Sbjct: 48 NPEQQQAVINTEGPLLVLAGAGTGKTRVLTTRISHILRSGLASPKQILAVTFTNKAALEM 107 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ E+I G + T H+ Sbjct: 108 KMRIGELIGEIVE-------------------------------------GMPWLGTFHS 130 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ ++ ++F I D + +L+++ + + LD+ + F +++ Sbjct: 131 TGAKILRRHAELVDLKTNFTILDNDDVIRLLKQ----LIQAEGLDDKRWPARCFAMMIDS 186 Query: 199 SNDEDI 204 ++ + Sbjct: 187 WKNQGL 192 >gi|282889815|ref|ZP_06298354.1| hypothetical protein pah_c004o216 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500389|gb|EFB42669.1| hypothetical protein pah_c004o216 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 677 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 67/176 (38%), Gaps = 40/176 (22%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLL 66 + E +D ++ S++ + + A AGSGKT +L R+ L+ + A P ++L Sbjct: 3 NDFKEELDALN--PSQRAAVTTTDGRVLILAGAGSGKTKVLTVRMAYLMSIKGASPKSIL 60 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 LT T AAAEM HR+ ++K L Sbjct: 61 GLTFTNKAAAEMRHRIGAF------------------------AAPHIAKQISL------ 90 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 T H+FC I++ + T F++ DE+ ++LI + L Sbjct: 91 -------CTFHSFCMQILRAEIHKLGYTPQFSLYDEKDVQRLIGLIARDVLEHEAE 139 >gi|310778912|ref|YP_003967245.1| ATP-dependent DNA helicase, Rep family [Ilyobacter polytropus DSM 2926] gi|309748235|gb|ADO82897.1| ATP-dependent DNA helicase, Rep family [Ilyobacter polytropus DSM 2926] Length = 725 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 59/163 (36%), Gaps = 39/163 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L + ++ AS + A AGSGKT + R+ ++ P +L +T T A Sbjct: 4 LDNLNSEQKKAASKVEGPVLILAGAGSGKTRTVTYRIAHMVKEKEISPYKILAVTFTNKA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +I S + V Sbjct: 64 AREMRERVETLIGEDSK--------------------------------------RVMVS 85 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 T HAF +++ + +E S+F I D + K+LI+ K + Sbjct: 86 TFHAFGVRLLRMYGVELGYNSNFNIYDGDDQKRLIKNIMKELV 128 >gi|302869847|ref|YP_003838484.1| ATP-dependent DNA helicase PcrA [Micromonospora aurantiaca ATCC 27029] gi|302572706|gb|ADL48908.1| ATP-dependent DNA helicase PcrA [Micromonospora aurantiaca ATCC 27029] Length = 803 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 + +D ++ ++ + + A AGSGKT +L R+ LL A + HP ++ +T Sbjct: 38 AALLDGLNG--PQRDAVTHAGSPLLIVAGAGSGKTRVLTNRIAYLLAARDVHPGEIIAIT 95 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV ++ + L Sbjct: 96 FTNKAAGEMKERVAALVGPRARL------------------------------------- 118 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I++ A + S F+I D + S++L++ + Sbjct: 119 -MWVSTFHSACVRILRAEHEHAGLKSTFSIYDADDSRRLMQMVAREL 164 >gi|188588674|ref|YP_001919827.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E3 str. Alaska E43] gi|188498955|gb|ACD52091.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E3 str. Alaska E43] Length = 749 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 40/163 (24%) Query: 14 IDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++L S EQ A + A AGSGKT +L R+ ++ P +L +T T Sbjct: 1 MELKSLLNKEQYEGAITIDGQLLILAGAGSGKTRVLTYRMAHMIEDMGIAPYNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV+ +I + + + Sbjct: 61 NKAAKEMKDRVISLIGSKAE--------------------------------------NM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + T H+ C I+++ + TS+F I D K LI+E K Sbjct: 83 WISTFHSTCVRILRREIDKIGYTSNFTIYDTSDQKVLIKECMK 125 >gi|110680547|ref|YP_683554.1| DNA helicase II, putative [Roseobacter denitrificans OCh 114] gi|109456663|gb|ABG32868.1| DNA helicase II, putative [Roseobacter denitrificans OCh 114] Length = 810 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 73/193 (37%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ + E + D + A AG+GKT L R++ LL A P+ +L +T T Sbjct: 27 YLDGLNPAQREAVEQLD--GPVLMLAGAGTGKTRALTARIVHLLNTGRARPNEVLAVTFT 84 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM +RV E++ G Sbjct: 85 NKAAREMKNRVGEMLGQPIE-------------------------------------GMP 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T HA C ++++ + S+F I D + +L+++ +++ +D+ + Sbjct: 108 WLGTFHAICVKLLRRHAELVGLKSNFTILDTDDQLRLLKQ----LVSAEGIDDKRWPARQ 163 Query: 192 FYEILEISNDEDI 204 I++ + Sbjct: 164 LASIIDGWKNSAF 176 >gi|289423398|ref|ZP_06425202.1| ATP-dependent DNA helicase PcrA [Peptostreptococcus anaerobius 653-L] gi|289156156|gb|EFD04817.1| ATP-dependent DNA helicase PcrA [Peptostreptococcus anaerobius 653-L] Length = 786 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 73/208 (35%), Gaps = 64/208 (30%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +D ++ + + + ++ + A AGSGKT +L R+ L+ N +PS +L +T T Sbjct: 3 LDGLNPAQRQAVERTE--GPVLILAGAGSGKTKVLTTRISYLVEDKNINPSNILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV II S + Sbjct: 61 KAANEMRERVESIIGEESR--------------------------------------DMW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ C I+++ + F I D LI+E K+ Sbjct: 83 ISTFHSCCVRILRKDINKIGYNRSFVIYDSTDQLTLIKECIKAL---------------- 126 Query: 193 YEILEISNDEDIE--TLISDIISNRTAL 218 ND+ E LI++I S + L Sbjct: 127 -----DLNDKKFEPRALIAEISSAKDKL 149 >gi|154509660|ref|ZP_02045302.1| hypothetical protein ACTODO_02193 [Actinomyces odontolyticus ATCC 17982] gi|153799294|gb|EDN81714.1| hypothetical protein ACTODO_02193 [Actinomyces odontolyticus ATCC 17982] Length = 900 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 ++ + + A AGSGKT +L R+ LL A +L +T T AAAEM Sbjct: 90 NDRQREAVTHAGSPLLILAGAGSGKTRVLTHRIAYLLARGRARAGEILAITFTNKAAAEM 149 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R ++ + + V T H+ Sbjct: 150 RERAGALVGDDAR--------------------------------------RMWVSTFHS 171 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C +++ A ++S F I D + S++LI+ K+ Sbjct: 172 ACVRLLRYEHEAAGLSSSFTIYDAQDSQRLIQMVLKAM 209 >gi|30260477|ref|NP_842854.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Ames] gi|47525567|ref|YP_016916.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. 'Ames Ancestor'] gi|254739087|ref|ZP_05196789.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Western North America USA6153] gi|254761884|ref|ZP_05213733.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Australia 94] gi|30253845|gb|AAP24340.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. Ames] gi|47500715|gb|AAT29391.1| ATP-dependent DNA helicase PcrA [Bacillus anthracis str. 'Ames Ancestor'] Length = 747 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L +Q + A AGSGKT +L R+ LL P +L +T T A Sbjct: 8 LNGLNPQQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITFTNKA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ + + + Sbjct: 68 AREMRERIDTLVGPEAE--------------------------------------DIWIS 89 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D ++++ K Sbjct: 90 TFHSMCVRILRRDIDHIGINRNFTILDSGDQLTVVKKIMKE 130 >gi|282898588|ref|ZP_06306576.1| ATP-dependent DNA helicase PcrA [Cylindrospermopsis raciborskii CS-505] gi|281196456|gb|EFA71365.1| ATP-dependent DNA helicase PcrA [Cylindrospermopsis raciborskii CS-505] Length = 777 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 75/184 (40%), Gaps = 23/184 (12%) Query: 2 IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-A 60 ++ N+ + + ++ S+++ V A AGSGKT L R+ L+L N Sbjct: 1 MHINTNNDFTSQLNF-----SQRIAVEHYCGPLLVVAGAGSGKTRALTYRIANLILQNRV 55 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 HP +L +T T AA EM R+ + ++ G+K + + + Sbjct: 56 HPENILAVTFTNKAAREMKDRIQRLFADQFAINQY----------GQKLDLLPAQQQNEV 105 Query: 121 LITILETP-GGLKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAK 173 + ++ T + T H+ I++ ++ E +F+I DE + LI+E Sbjct: 106 ISSVYRTYIKNIWCGTFHSLFSRILRFDVEKYQDEKGRHWQKNFSIFDESDVQTLIKEIV 165 Query: 174 KSTL 177 L Sbjct: 166 TKQL 169 >gi|170739391|ref|YP_001768046.1| UvrD/REP helicase [Methylobacterium sp. 4-46] gi|168193665|gb|ACA15612.1| UvrD/REP helicase [Methylobacterium sp. 4-46] Length = 789 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 69/195 (35%), Gaps = 44/195 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 + +D ++ + + A++ V A AG+GKT +L R+ L+ A P +L +T Sbjct: 29 AAYLDGLNPEQRRAVEATE--GPVLVLAGAGTGKTRVLTTRIAHLIAIGRARPFDILAVT 86 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ +I A G Sbjct: 87 FTNKAAREMKERIGGLIGAAGE-------------------------------------G 109 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + T HA I+++ + S F I + +L+++ + + +D Sbjct: 110 MPWLGTFHAIGTKILRRHAELVGLRSDFTILGTDDQLRLLKQ----VIEAAGIDEKRWPA 165 Query: 190 KAFYEILEISNDEDI 204 + + ++ + + Sbjct: 166 RGLAQAIDGWKNRGL 180 >gi|163868698|ref|YP_001609910.1| DNA helicase II [Bartonella tribocorum CIP 105476] gi|161018357|emb|CAK01915.1| DNA helicase II [Bartonella tribocorum CIP 105476] Length = 787 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 72/199 (36%), Gaps = 43/199 (21%) Query: 8 QEHSETIDLISQTK-SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 ++ S D + Q +Q + V A AG+GKT +L R+ +L + A P + Sbjct: 42 EKKSYNTDYLGQLNPEQQQAVINTEGPLLVLAGAGTGKTRVLTTRISHILRSGLASPQQI 101 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T AA EM R+ E+I Sbjct: 102 LAVTFTNKAAREMKIRIGELIGEVVE---------------------------------- 127 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 G + T H+ I+++ ++ +F I D + +L+++ + + LD+ Sbjct: 128 ---GMPWLGTFHSTGAKILRRHAELVDLKRNFTILDSDDVLRLLKQ----LIQAAGLDDK 180 Query: 186 EELKKAFYEILEISNDEDI 204 + +++ ++ Sbjct: 181 RWPARNLAMMIDSWKNQGF 199 >gi|251778648|ref|ZP_04821568.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082963|gb|EES48853.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 749 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 40/163 (24%) Query: 14 IDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++L S EQ A + A AGSGKT +L R+ ++ P +L +T T Sbjct: 1 MELKSLLNKEQYEGAITIDGQLLILAGAGSGKTRVLTYRMAHMIEDMGIAPYNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV+ +I + + + Sbjct: 61 NKAAKEMKDRVISLIGSKAE--------------------------------------NM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + T H+ C I+++ + TS+F I D K LI+E K Sbjct: 83 WISTFHSTCVRILRREIDKIGYTSNFTIYDTSDQKVLIKECMK 125 >gi|237820788|ref|ZP_04596633.1| recombination helicase AddA [Streptococcus pneumoniae CCRI 1974M2] Length = 1216 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 84/222 (37%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++V+R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L+E + + + + K++F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKESFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 E + K+ F S +K + +S Sbjct: 187 FVGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223 >gi|227501454|ref|ZP_03931503.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725] gi|227077479|gb|EEI15442.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725] Length = 795 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 41/159 (25%) Query: 21 KSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78 +QL A + R + A AGSGKT +L +R+ L+ +P L +T T AAAEM Sbjct: 2 NPQQLEAVTHTGRPLLIVAGAGSGKTAVLTRRIAYLMRHRGVNPWESLAITFTNKAAAEM 61 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ + + V T H+ Sbjct: 62 KERVGSLVGPVAE--------------------------------------RMWVSTFHS 83 Query: 139 FCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176 C I++Q + ++F I D + +++L+ K Sbjct: 84 ICVRILRQNAQLVPGLNTNFTIYDGDDARRLLSMIAKDM 122 >gi|325066848|ref|ZP_08125521.1| ATP-dependent DNA helicase PcrA [Actinomyces oris K20] Length = 649 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 56/158 (35%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 +++ + + A AGSGKT +L R+ L+ A P +L +T T AAAEM Sbjct: 3 NPAQESAVTHAGAPLLIIAGAGSGKTRVLTHRIAHLIATGRARPGEILAITFTNKAAAEM 62 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ + V T H+ Sbjct: 63 RERVTALVGPAGE--------------------------------------RMWVSTFHS 84 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ A + S F+I D S +LI + Sbjct: 85 ACVRILRREHEAAGLRSTFSIYDAADSTRLITLIVREL 122 >gi|315501309|ref|YP_004080196.1| ATP-dependent DNA helicase pcra [Micromonospora sp. L5] gi|315407928|gb|ADU06045.1| ATP-dependent DNA helicase PcrA [Micromonospora sp. L5] Length = 803 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 + +D ++ ++ + + A AGSGKT +L R+ LL A + HP ++ +T Sbjct: 38 AALLDGLNG--PQRDAVTHAGSPLLIVAGAGSGKTRVLTNRIAYLLAARDVHPGEIIAIT 95 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV ++ + L Sbjct: 96 FTNKAAGEMKERVAALVGPRARL------------------------------------- 118 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I++ A + S F+I D + S++L++ + Sbjct: 119 -MWVSTFHSACVRILRAEHEHAGLKSTFSIYDADDSRRLMQMVAREL 164 >gi|121601965|ref|YP_989213.1| putative DNA helicase II [Bartonella bacilliformis KC583] gi|120614142|gb|ABM44743.1| putative DNA helicase II [Bartonella bacilliformis KC583] Length = 816 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 75/198 (37%), Gaps = 44/198 (22%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q S+ + ++ +Q + V A AG+GKT +L R+ +L A+P +L Sbjct: 37 QYESDYLKKLN--PEQQQAVINTEGPILVLAGAGTGKTRVLTTRIAHILHLGLAYPRQIL 94 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ E++ Sbjct: 95 AVTFTNKAANEMKIRIGELVGKTVE----------------------------------- 119 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ I+++ ++ S+F I D + +L+++ + + LD+ Sbjct: 120 --GMPWLGTFHSTGVKILRRHAELVDLKSNFTILDNDDVLRLLKQ----LIQAENLDDKR 173 Query: 187 ELKKAFYEILEISNDEDI 204 ++ +++ ++ + Sbjct: 174 WPARSLAMMIDSWKNQGL 191 >gi|299146105|ref|ZP_07039173.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_23] gi|298516596|gb|EFI40477.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. 3_1_23] Length = 792 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 57/165 (34%), Gaps = 40/165 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHT 71 + I + Q A + V A AGSGKT +L ++ LL +P +L LT T Sbjct: 4 NYIDELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ + M +AR+L Sbjct: 64 NKAAREMKERIARQVG--------------------------MERARYL----------- 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ TS F I D SK L+ K Sbjct: 87 WMGTFHSIFSRILRAEATFIGFTSQFTIYDTADSKSLLRSIIKEM 131 >gi|319408809|emb|CBI82466.1| DNA helicase II [Bartonella schoenbuchensis R1] Length = 805 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 69/186 (37%), Gaps = 42/186 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 ++ + V A AG+GKT +L R+ +L AHP +L +T T AA EM Sbjct: 48 NPEQREAVINTEGPLLVLAGAGTGKTRVLTTRIFHILHLGLAHPKQILAITFTNKAAREM 107 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ E++ G + T H+ Sbjct: 108 KTRIAELVGEAIE-------------------------------------GMPWLGTFHS 130 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ ++ S+F I D + +L+++ + + LD+ ++ +++ Sbjct: 131 IGAKILRRHAELIDLKSNFTILDTDDVVRLLKQ----LIQAAGLDDKRWSARSLATMIDA 186 Query: 199 SNDEDI 204 ++ + Sbjct: 187 WKNQGL 192 >gi|307748346|gb|ADN91616.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni M1] Length = 921 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 7/178 (3%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + L+L A + +L LT TK AA EM R++E + Sbjct: 8 LALEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKEN 67 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 E+ K+ GK + + L T LK+ T AF I++ F L + Sbjct: 68 KTSECNELCKLLGKDKEELISLRDVKK-EEFLRT--ELKISTFDAFFGKILRVFALNLGL 124 Query: 154 TSHFAIADEE-QSKKLI---EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL 207 +S F +++E +++ + + + ++ +E + F E+ + + + L Sbjct: 125 SSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLVDEKENFFNELEKFYENAYFQNL 182 >gi|260592441|ref|ZP_05857899.1| ATP-dependent DNA helicase [Prevotella veroralis F0319] gi|260535487|gb|EEX18104.1| ATP-dependent DNA helicase [Prevotella veroralis F0319] Length = 843 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 37/161 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L + S++ T + V A AGSGKT +L ++ LL P +L LT T AA Sbjct: 11 LATLNTSQREAVEYCTGPSLVIAGAGSGKTRVLTYKIAYLLSRGLKPWNILALTFTNKAA 70 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ ++ + + AR L + T Sbjct: 71 REMKERIAQVTS--------------------------LRDARQLYM-----------GT 93 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ I+++ +F I DE S+ L++ K+ Sbjct: 94 FHSIFARILRREGEVIGFNGNFTIYDEADSRSLLKNIIKAL 134 >gi|313674951|ref|YP_004052947.1| uvrd/rep helicase [Marivirga tractuosa DSM 4126] gi|312941649|gb|ADR20839.1| UvrD/REP helicase [Marivirga tractuosa DSM 4126] Length = 754 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 +D +S Q + + A AGSGKT +L R+ L+ + N P ++L LT T Sbjct: 1 MDYLSHLNPPQREGVENLEGPTMIIAGAGSGKTRVLTYRIAHLITVKNVDPFSILALTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +I+ + L Sbjct: 61 NKAAKEMRERIEKIVGTDAR--------------------------------------NL 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ + S+F I D E SK LI + Sbjct: 83 WMGTFHSVFARILRAEADKLGYPSNFTIYDTEDSKSLIRAIVREM 127 >gi|223986797|ref|ZP_03636779.1| hypothetical protein HOLDEFILI_04102 [Holdemania filiformis DSM 12042] gi|223961230|gb|EEF65760.1| hypothetical protein HOLDEFILI_04102 [Holdemania filiformis DSM 12042] Length = 721 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 70/165 (42%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +I+++++ + + +L S ++ + A AGSGKT +L R+ L+ + P+ +L +T T Sbjct: 3 SIEMLNENQKKAVLTS--SQYVRIIAGAGSGKTRVLTMRIAHLIEQCHVWPNKILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +++ E + Sbjct: 61 NKAANEMKERIRQMLP--------------------------------------EQGNAV 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + TIH+ C I+++ + +F + D + + +++EA K Sbjct: 83 FISTIHSLCVRILREDIPAMGMPRNFTVMDADDQRSILKEAYKEF 127 >gi|52079148|ref|YP_077939.1| ATP-dependent DNA helicase [Bacillus licheniformis ATCC 14580] gi|52784515|ref|YP_090344.1| PcrA [Bacillus licheniformis ATCC 14580] gi|52002359|gb|AAU22301.1| ATP-dependent DNA helicase [Bacillus licheniformis ATCC 14580] gi|52347017|gb|AAU39651.1| PcrA [Bacillus licheniformis ATCC 14580] Length = 739 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 52/157 (33%), Gaps = 39/157 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 K +Q + A AGSGKT +L R+ L+ P +L +T T AA EM Sbjct: 13 NKMQQEAVKTTDGPLLIMAGAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFTNKAAREM 72 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV I+ + + + T H+ Sbjct: 73 KERVESILGPGA--------------------------------------DDIWISTFHS 94 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 C I+++ I +F+I D +I+ K Sbjct: 95 MCVRILRRDIDRIGINRNFSILDTSDQLSVIKGILKE 131 >gi|150388771|ref|YP_001318820.1| ATP-dependent DNA helicase PcrA [Alkaliphilus metalliredigens QYMF] gi|149948633|gb|ABR47161.1| ATP-dependent DNA helicase PcrA [Alkaliphilus metalliredigens QYMF] Length = 724 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 66/190 (34%), Gaps = 43/190 (22%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 ++L ++ + A AGSGKT +L R+ L+ P +L +T T Sbjct: 1 MNLTHLNDEQRKAVEHTKGPLLLLAGAGSGKTRVLTHRIAYLVEELGVSPYHILSITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +++ + L Sbjct: 61 KAAREMKERIHQLLG--------------------------------------DGFRDLW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T H+ C I++ + + +F I D + +I+E L + LD+ +A Sbjct: 83 VSTFHSSCVRILRSEIDKLGYSKNFVIYDTTDQQIVIKEC----LKKLNLDDKMYQPRAV 138 Query: 193 YEILEISNDE 202 + + D+ Sbjct: 139 LAEIGKAKDQ 148 >gi|319784375|ref|YP_004143851.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170263|gb|ADV13801.1| UvrD/REP helicase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 697 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 31/162 (19%) Query: 17 ISQTKSEQLL--ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 ++ + + + A V A AGSGKT+ L RV L++ A P +L +T ++ A Sbjct: 23 LNDAQRQAVEHGAGQIAGPLLVIAGAGSGKTNTLAHRVAHLIVKGADPRRILLMTFSRRA 82 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM+ RV I +++ +T Sbjct: 83 ASEMARRVERIAGEVLGRDAAVITDALT-----------------------------WAG 113 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++ + LE + F I D E S L+ + Sbjct: 114 TFHGIGARLLRDYALEIGLDPAFTIHDREDSADLMNLVRHEL 155 >gi|315166930|gb|EFU10947.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1341] Length = 791 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 51 NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + V T H+ Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + +F I D + K L++ Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 170 >gi|315172193|gb|EFU16210.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1346] Length = 791 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 51 NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + V T H+ Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + +F I D + K L++ Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 170 >gi|157415705|ref|YP_001482961.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni 81116] gi|157386669|gb|ABV52984.1| putative helicase [Campylobacter jejuni subsp. jejuni 81116] Length = 921 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 7/178 (3%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + L+L A + +L LT TK AA EM R++E + Sbjct: 8 LALEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKEN 67 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 E+ K+ GK + + L T LK+ T AF I++ F L + Sbjct: 68 KTSECNELCKLLGKDKEELISLRDVKK-EEFLRT--ELKISTFDAFFGKILRVFALNLGL 124 Query: 154 TSHFAIADEE-QSKKLI---EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL 207 +S F +++E +++ + + + ++ +E + F E+ + + + L Sbjct: 125 SSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLVDEKENFFNELEKFYENAYFQNL 182 >gi|110637958|ref|YP_678165.1| ATP-dependent DNA helicase II [Cytophaga hutchinsonii ATCC 33406] gi|110280639|gb|ABG58825.1| ATP-dependent DNA helicase II [Cytophaga hutchinsonii ATCC 33406] Length = 749 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 88/234 (37%), Gaps = 49/234 (20%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D ++ + + + +D + A AGSGKT +L R+ L+ P +L LT T Sbjct: 3 YLDSLNDVQRQAVEQTD--GPVMIIAGAGSGKTRVLTYRIAHLIQKGVEPFNILSLTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM HR+ + S+AR++++ Sbjct: 61 KAAKEMQHRIQAVCG---------------------------SEARNVMM---------- 83 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 T H+ I++ + S+F I D E SK L+ ++ L LD+ Sbjct: 84 -GTFHSVFSRILRVESQKIGFPSNFTIYDTEDSKSLL----RTILKEQNLDDKVYKPNTV 138 Query: 193 YEILEISNDE--DIETLISD---IISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 + + + + + I++ + +R AL+ +++ ++I Sbjct: 139 FNRISAAKNRLISYKEYIANPNYMADDRAALRPEMGKLYQMYQERLIRAGAMDF 192 >gi|160884387|ref|ZP_02065390.1| hypothetical protein BACOVA_02365 [Bacteroides ovatus ATCC 8483] gi|156110126|gb|EDO11871.1| hypothetical protein BACOVA_02365 [Bacteroides ovatus ATCC 8483] Length = 792 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 57/165 (34%), Gaps = 40/165 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHT 71 + I + Q A + V A AGSGKT +L ++ LL +P +L LT T Sbjct: 4 NYIDELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ + M +AR+L Sbjct: 64 NKAAREMKERIARQVG--------------------------MERARYL----------- 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ TS F I D SK L+ K Sbjct: 87 WMGTFHSIFSRILRAEATFIGFTSQFTIYDTADSKSLLRSIIKEM 131 >gi|293373822|ref|ZP_06620166.1| putative ATP-dependent helicase PcrA [Bacteroides ovatus SD CMC 3f] gi|298481100|ref|ZP_06999294.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. D22] gi|292631221|gb|EFF49855.1| putative ATP-dependent helicase PcrA [Bacteroides ovatus SD CMC 3f] gi|298272674|gb|EFI14241.1| ATP-dependent DNA helicase PcrA [Bacteroides sp. D22] Length = 792 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 57/165 (34%), Gaps = 40/165 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHT 71 + I + Q A + V A AGSGKT +L ++ LL +P +L LT T Sbjct: 4 NYIDELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ + M +AR+L Sbjct: 64 NKAAREMKERIARQVG--------------------------MERARYL----------- 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ TS F I D SK L+ K Sbjct: 87 WMGTFHSIFSRILRAEATFIGFTSQFTIYDTADSKSLLRSIIKEM 131 >gi|300766625|ref|ZP_07076542.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495725|gb|EFK30876.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 759 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 68/199 (34%), Gaps = 47/199 (23%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPS 63 NS + S + +Q D + A AGSGKT +L RV L+ +P Sbjct: 3 NSVSKESLLAGM---NDKQQEAVLDTEGPLLIMAGAGSGKTRVLTHRVAYLIEEQGVNPW 59 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L +T T AA EM RV +++ Sbjct: 60 NVLAITFTNKAAREMRERVGKLLG------------------------------------ 83 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 E+ + V T HA C I+++ + F IA + + L K L +D Sbjct: 84 --ESAQEVWVSTFHALCVRILRRDIEQIGYNRAFTIAGTSEQRTL----VKRILTEQNID 137 Query: 184 NNE-ELKKAFYEILEISND 201 + + + + I ND Sbjct: 138 SKKFDPRSILSAISNAKND 156 >gi|54026969|ref|YP_121211.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152] gi|54018477|dbj|BAD59847.1| putative ATP-dependent DNA helicase [Nocardia farcinica IFM 10152] Length = 842 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 66/171 (38%), Gaps = 42/171 (24%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66 ++ +D ++ ++ + A AGSGKT +L +R+ LL A + P +L Sbjct: 45 EQVERLLDGLN--PQQRAAVVHAGSPLLIVAGAGSGKTAVLTRRIAYLLAARDVSPGQIL 102 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AAAEM RV ++ + Sbjct: 103 AITFTNKAAAEMRERVTGLVGPRA------------------------------------ 126 Query: 127 TPGGLKVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I++ Q L + S+F+I D + S++L+ + Sbjct: 127 --ATMWVSTFHSSCVRILRMQAALLPGLNSNFSIYDADDSRRLLTMISRDL 175 >gi|328955224|ref|YP_004372557.1| UvrD/REP helicase [Coriobacterium glomerans PW2] gi|328455548|gb|AEB06742.1| UvrD/REP helicase [Coriobacterium glomerans PW2] Length = 1215 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 68/192 (35%), Gaps = 37/192 (19%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCL 68 +DL + ++ + +VSA AGSGKT L +R+L L + P +L + Sbjct: 1 MDLAGLMERQREIVRALDCPLFVSAGAGSGKTFTLTRRILWALSERSGPYLDSLDQVLAI 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T+ AA E+ RV + ++ + Sbjct: 61 TFTRDAAQEIRERVRAALIEEGMRTEAL------------------------------AI 90 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + TIH C +++ LE I F+I + +L++ A + L L + + Sbjct: 91 DDAWISTIHGMCARMLRAHALELGIDPEFSILQDTD--ELMDAAVEHVLVRAELASKRAV 148 Query: 189 KKAFYEILEISN 200 + + Sbjct: 149 QADSQAAADTEG 160 >gi|325972020|ref|YP_004248211.1| UvrD/REP helicase [Spirochaeta sp. Buddy] gi|324027258|gb|ADY14017.1| UvrD/REP helicase [Spirochaeta sp. Buddy] Length = 754 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 71/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 ++ + ++ +Q A + R V A AGSGKT ++ ++ + +L Sbjct: 1 MADIVSMLEALNEQQREAVLENERPLLVLAGAGSGKTRVITTKIAYAVEKLGIPAYKILA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA+EM RV ++ S + D Sbjct: 61 VTFTNKAASEMKERVGVMLDGNSQVED--------------------------------- 87 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 ++T H+F ++++F E + S+F I D++ S L LAS + + Sbjct: 88 ---CTIRTFHSFGAWLLRRFGSEIGLASNFTIYDDDDSLSL--------LASCFPNYKKR 136 Query: 188 LKKAFYEILEISNDEDIE 205 + + D + Sbjct: 137 ELDPVMRKISYAKDRALR 154 >gi|168186071|ref|ZP_02620706.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum C str. Eklund] gi|169296014|gb|EDS78147.1| ATP-dependent DNA helicase PcrA [Clostridium botulinum C str. Eklund] Length = 760 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLT 69 E +L+++ + E A + V A AGSGKT +L R+ ++ P +L +T Sbjct: 1 MELKELLNKEQYEAATAIE--GPVLVLAGAGSGKTRVLTYRIAHMIEDLEIPQYNILAIT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ ++++ E Sbjct: 59 FTNKAAGEMKDRIKKLVS--------------------------------------ENID 80 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ + +FAI D K L+++ K Sbjct: 81 SMWVSTFHSCCVRILRREIDKLGYNKNFAIYDSSDQKNLVKQCMKEL 127 >gi|265753474|ref|ZP_06088829.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263235188|gb|EEZ20712.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 796 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 56/163 (34%), Gaps = 39/163 (23%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + + + Q A + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 3 NYLEELNESQRDAVLYNEGPSLVIAGAGSGKTRVLTYKIAYLLEQGYTPWSILALTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R++ + + L + Sbjct: 63 AAREMKERIVRQVG--------------------------------------DQARYLWM 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ +S+F I D SK LI+ K Sbjct: 85 GTFHSIFSRILRCEAQVIGFSSNFTIYDSSDSKSLIKSIVKEM 127 >gi|327402801|ref|YP_004343639.1| UvrD/REP helicase [Fluviicola taffensis DSM 16823] gi|327318309|gb|AEA42801.1| UvrD/REP helicase [Fluviicola taffensis DSM 16823] Length = 771 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 39/166 (23%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 +D +++ S+++ + V A AGSGKT +L R+ ++ P +L LT Sbjct: 1 MNYLDGLNE--SQRVAVENFEGPTMVIAGAGSGKTRVLTMRIAFMIDRGVDPFNILALTF 58 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM+ R+ II + + Sbjct: 59 TNKAAKEMTERIGSIIGSSEAKN------------------------------------- 81 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T H+ I++ +F I D + +K L+++ K Sbjct: 82 ITMGTFHSVFSRILRINADRLGYPQNFTIYDTQDTKSLLKDIIKEL 127 >gi|325977976|ref|YP_004287692.1| ATP-dependent exonuclease subunit A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177904|emb|CBZ47948.1| ATP-dependent exonuclease subunit A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 1168 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 78/206 (37%), Gaps = 27/206 (13%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 VSA+AGSGKT ++V+R++ +L L T T AA E+ R+ + I+ Sbjct: 1 MVSASAGSGKTFVMVERIIDKILRGVTIDQLFISTFTVKAAGELKERIEKKIS------- 53 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + ++ + ++ L L + T+ AF + ++ Q+ I+ Sbjct: 54 ------------QALQETTDNDLKNYLNEQLLGLQTADIGTMDAFTQKLVNQYGYTLGIS 101 Query: 155 SHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 F I D+ + L E + M N+ EL + S + T I+ Sbjct: 102 PTFRIMTDKSEQDILKNEVFFDLFSDYMTGNDAELFRQLVR--NFSGNRKDSTAFRGIV- 158 Query: 214 NRTALKLIFFFFSYLWRRKIIEKSLW 239 K+ F + +K + + Sbjct: 159 ----YKIYDFSQATDNPQKWLAEVFL 180 >gi|325570044|ref|ZP_08145969.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus ATCC 12755] gi|325156872|gb|EGC69043.1| ATP-dependent DNA helicase PcrA [Enterococcus casseliflavus ATCC 12755] Length = 785 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 61/167 (36%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 SE + ++ + E ++ + A AGSGKT +L R+ L+ N +P +L +T Sbjct: 43 SELLKRMNPRQKEAVM--HTEGPLLLMAGAGSGKTRVLTHRIAYLIEEKNVNPWNILAIT 100 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV +++ + Sbjct: 101 FTNKAAREMKERVSQLLGSGGE-------------------------------------- 122 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ + +F I D + L++ K Sbjct: 123 DVWVSTFHSMCVRILRRDVDRIGYSKNFTIIDSSEQNTLMKRVLKEL 169 >gi|295397183|ref|ZP_06807286.1| ATP-dependent DNA helicase PcrA [Aerococcus viridans ATCC 11563] gi|294974572|gb|EFG50296.1| ATP-dependent DNA helicase PcrA [Aerococcus viridans ATCC 11563] Length = 856 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 54/158 (34%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ + A AGSGKT +L R+ +L + +P +L +T T AA EM Sbjct: 26 NDRQKEAVEHTEGPLLIMAGAGSGKTRVLTHRMAYILSEKDVNPWNILAITFTNKAAKEM 85 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ + + V T HA Sbjct: 86 KERVSALVGPDA--------------------------------------NDMWVSTFHA 107 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ T F IAD + + LI+ K Sbjct: 108 MCVRILRREAEAIGFTRSFTIADPSEQQTLIKRIIKEL 145 >gi|229817712|ref|ZP_04447994.1| hypothetical protein BIFANG_02984 [Bifidobacterium angulatum DSM 20098] gi|229785501|gb|EEP21615.1| hypothetical protein BIFANG_02984 [Bifidobacterium angulatum DSM 20098] Length = 889 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 40/158 (25%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ +Q A + + A AGSGKT +L +R+ +L A PS +L +T T Sbjct: 33 ELVGDLNKQQSEAVQYRGAALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 92 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ +I + + Sbjct: 93 KAAAEMRERLTALIGPVAQ--------------------------------------RMW 114 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 V T H+ C I+++ + S F+I D S++L++ Sbjct: 115 VSTFHSACVRILRRDGKALGLKSGFSIYDSADSERLVK 152 >gi|169833925|ref|YP_001694551.1| recombination helicase AddA [Streptococcus pneumoniae Hungary19A-6] gi|251764563|sp|B1IBR6|ADDA_STRPI RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|168996427|gb|ACA37039.1| recombination helicase AddA [Streptococcus pneumoniae Hungary19A-6] Length = 1216 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAANELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L+E + + + + K+ F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSDSFL 223 >gi|108803668|ref|YP_643605.1| ATP-dependent DNA helicase PcrA [Rubrobacter xylanophilus DSM 9941] gi|108764911|gb|ABG03793.1| ATP-dependent DNA helicase PcrA [Rubrobacter xylanophilus DSM 9941] Length = 694 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 48/149 (32%), Gaps = 39/149 (26%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 V A AGSGKT +L R+ LL A P +L +T T AA EM RV ++ Sbjct: 3 HTEGPLLVLAGAGSGKTRVLTHRIAYLLERGLAAPDEVLAITFTNKAADEMKERVALLVG 62 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 + + V T H+FC +++ Sbjct: 63 QEAR--------------------------------------RMWVSTFHSFCARLLRAH 84 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKST 176 F I D+ +L++ Sbjct: 85 AERLGYRRGFTIYDQGDGVRLVKRCIVEL 113 >gi|121999202|ref|YP_001003989.1| UvrD/REP helicase [Halorhodospira halophila SL1] gi|121590607|gb|ABM63187.1| ATP-dependent DNA helicase UvrD [Halorhodospira halophila SL1] Length = 725 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 39/157 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78 +++ P A V A AGSGKT +L +R L+ + A P +L +T T AA EM Sbjct: 11 NDAQREAVCLPPGRALVLAGAGSGKTRVLTRRAAYLVQVEGASPFAILAVTFTNKAAGEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ E++ + G+ V T H Sbjct: 71 RGRIGELLGIAT--------------------------------------AGMWVGTFHG 92 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 +++Q A + F I D + ++++ ++ Sbjct: 93 IAHRLLRQHAQRAGLPEGFQILDADDQLRVVKRVLRA 129 >gi|315146962|gb|EFT90978.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4244] Length = 791 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 51 NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + V T H+ Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + +F I D + K L++ Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 170 >gi|254455522|ref|ZP_05068951.1| DNA helicase II [Candidatus Pelagibacter sp. HTCC7211] gi|207082524|gb|EDZ59950.1| DNA helicase II [Candidatus Pelagibacter sp. HTCC7211] Length = 678 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 40/167 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCL 68 +S+ +D ++ + E +L D + A AGSGKT +L R+ ++ P+ +L + Sbjct: 3 NSDYLDNLNNAQKEAVLHVD--GPLLIVAGAGSGKTKVLTSRIAHIIKKKKAFPNQILSV 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV +I+ + + Sbjct: 61 TFTNKAAKEMQTRVSKILGSTAT------------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G + T H+ C I+++ AN+ S+F I D + +LI+ KS Sbjct: 84 GLSWLGTFHSICVKILRKHAKAANLNSNFTIIDTDDQIRLIKNICKS 130 >gi|149006188|ref|ZP_01829900.1| exonuclease RexA [Streptococcus pneumoniae SP18-BS74] gi|307127336|ref|YP_003879367.1| recombination helicase AddA [Streptococcus pneumoniae 670-6B] gi|147761965|gb|EDK68927.1| exonuclease RexA [Streptococcus pneumoniae SP18-BS74] gi|306484398|gb|ADM91267.1| recombination helicase AddA [Streptococcus pneumoniae 670-6B] gi|332075086|gb|EGI85557.1| recombination helicase AddA [Streptococcus pneumoniae GA17545] Length = 1216 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 84/222 (37%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++V+R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L+E + + + + K+ F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + +S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223 >gi|302346510|ref|YP_003814808.1| putative ATP-dependent helicase PcrA [Prevotella melaninogenica ATCC 25845] gi|302150595|gb|ADK96856.1| putative ATP-dependent helicase PcrA [Prevotella melaninogenica ATCC 25845] Length = 851 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 62/161 (38%), Gaps = 38/161 (23%) Query: 17 ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S Q A + T + V A AGSGKT +L ++ LL P +L LT T AA Sbjct: 11 LSALNESQREAVEYCTGPSLVIAGAGSGKTRVLTYKIAYLLNKGLKPWNILALTFTNKAA 70 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ +I TA A+HL + T Sbjct: 71 REMKERIAQITTA--------------------------KDAQHLYM-----------GT 93 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ I+++ S+F I DE S+ LI+ K+ Sbjct: 94 FHSIFARILRREGEAIGFGSNFTIYDENDSRSLIKSIVKAL 134 >gi|283768593|ref|ZP_06341505.1| putative ATP-dependent nuclease subunit A [Bulleidia extructa W1219] gi|283104985|gb|EFC06357.1| putative ATP-dependent nuclease subunit A [Bulleidia extructa W1219] Length = 1039 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 24/179 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAAAEM 78 T +QL + + VSA+AG+GKT++L++R+ R++ + +L +T TKAAA+EM Sbjct: 2 TDPQQLAIQERNTNVLVSASAGAGKTYLLIERLAQRIVQDHISLDQILAVTFTKAAASEM 61 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + RH + L ++ TI + Sbjct: 62 KTRLAMKLNRLRQTEIQE---------------------RHWIDQQLAILSKAEISTIDS 100 Query: 139 FCEAIMQQFPLEANITSH--FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 FC +++Q+ + Q K+L A ++ L+ N ++ K Sbjct: 101 FCLNLIKQYYSMIGLNPTRLHQTLSNGQEKELKHLAFETALSHFYQQNPKKALKLSNHF 159 >gi|116511959|ref|YP_809175.1| ATP-dependent DNA helicase PcrA [Lactococcus lactis subsp. cremoris SK11] gi|116107613|gb|ABJ72753.1| ATP-dependent DNA helicase PcrA [Lactococcus lactis subsp. cremoris SK11] Length = 758 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 82/234 (35%), Gaps = 47/234 (20%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + + +++ +++ + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLQGMNEKQAQAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R A L +T Sbjct: 59 TFTNKAAKEMRER-----------------------------------ALALTPRAQDTL 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-E 187 + T H+ C I+++ +F I D K L+ K L LD + E Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIIDPGDQKSLM----KRILKEANLDPKKWE 135 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 K I ND ET I+ R +++ ++++++ + Sbjct: 136 PKGLLNTISNAKNDLLDETAYEAQITARHPYEMVVARVYKIYQKELRKAESMDF 189 >gi|149197452|ref|ZP_01874503.1| UvrD/REP helicase [Lentisphaera araneosa HTCC2155] gi|149139470|gb|EDM27872.1| UvrD/REP helicase [Lentisphaera araneosa HTCC2155] Length = 674 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 70/191 (36%), Gaps = 42/191 (21%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 S +D ++ ++ + + + A AG+GKT ++ R+ ++ + A P +L + Sbjct: 1 MSVLLDRLND--EQRQAVTTTEKPLLILAGAGTGKTMVVTSRIAFIVQSGRAEPGEILAV 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R +I + Sbjct: 59 TFTNKAANEMKERAGRLIGQKAVKD----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 L V T H+F I++++ +A F +A+ LI++ ++ D + Sbjct: 84 --LWVSTFHSFGMKILRKYAYQAGYAPDFTLAEYGDQVGLIKQGLNEL--GLVEDGMSQD 139 Query: 189 KKAFYEILEIS 199 KA ++ ++ Sbjct: 140 PKAILSLISMA 150 >gi|121612796|ref|YP_001001130.1| putative recombination protein RecB [Campylobacter jejuni subsp. jejuni 81-176] gi|167006023|ref|ZP_02271781.1| ATP-dependent DNA helicase, UvrD/REP family protein [Campylobacter jejuni subsp. jejuni 81-176] gi|87249602|gb|EAQ72561.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni 81-176] Length = 921 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + L+L A + +L LT TK AA EM R++E + Sbjct: 8 LALEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKEN 67 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 E+ K+ GK + + L T LK+ T AF I++ F L + Sbjct: 68 KTSECNELCKLLGKDKEELISLRDAKK-EEFLRT--ELKISTFDAFFGKILRVFALNLGL 124 Query: 154 TSHFAIADEE 163 +S F +++E Sbjct: 125 SSDFTMSEER 134 >gi|330685592|gb|EGG97238.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU121] Length = 730 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ +EQ A + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LVKNMNAEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ + + + + Sbjct: 64 AAKEMKARVEQLVGEEAQV--------------------------------------IWM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D K +I++ K+ Sbjct: 86 STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127 >gi|327534311|gb|AEA93145.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis OG1RF] Length = 791 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 51 NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + V T H+ Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + +F I D + K L++ Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 170 >gi|312900317|ref|ZP_07759628.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0470] gi|311292505|gb|EFQ71061.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0470] gi|315170713|gb|EFU14730.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1342] Length = 791 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 51 NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + V T H+ Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + +F I D + K L++ Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 170 >gi|254521548|ref|ZP_05133603.1| DNA helicase II [Stenotrophomonas sp. SKA14] gi|219719139|gb|EED37664.1| DNA helicase II [Stenotrophomonas sp. SKA14] Length = 730 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 67/196 (34%), Gaps = 45/196 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67 + S +D ++ + E + A P V A AGSGKT +L R+ L + + Sbjct: 2 DVSHLLDGLNPAQREAVSA--PPGHHLVLAGAGSGKTRVLTHRIAWLHEVDGVPTHGIFA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM HR+ + S Sbjct: 60 VTFTNKAAGEMRHRIDAQLPNGSR------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ + T H +++ +A + F + D + +L K + ++ LD+ + Sbjct: 84 --GMWIGTFHGLANRLLRLHWQDAKLPEGFQVMDSDDQLRL----VKRVVQALELDDGKY 137 Query: 188 LKKAFYEILEISNDED 203 K + DE Sbjct: 138 PAKQIAWWINAQKDEG 153 >gi|259502570|ref|ZP_05745472.1| ATP-dependent DNA helicase PcrA [Lactobacillus antri DSM 16041] gi|259169460|gb|EEW53955.1| ATP-dependent DNA helicase PcrA [Lactobacillus antri DSM 16041] Length = 752 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 52/158 (32%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 + V A AGSGKT +L RV L+ P +L +T T AA EM Sbjct: 2 NDKQAEAVLTTEGPLLVMAGAGSGKTRVLTHRVAYLIEEKGVLPWNILAITFTNKAAKEM 61 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + + V T H+ Sbjct: 62 QERVGKLLGEGAQ--------------------------------------DIWVSTFHS 83 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + F IAD + + L+++ Sbjct: 84 LCVRILRRDIEKLGYNRAFTIADTSEQRTLMKQVCAEL 121 >gi|53690303|ref|ZP_00346176.1| COG0210: Superfamily I DNA and RNA helicases [Bifidobacterium longum DJO10A] Length = 454 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 40/158 (25%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ +Q A ++ + A AGSGKT +L +R+ +L A PS +L +T T Sbjct: 14 ELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 73 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ +I + + Sbjct: 74 KAAAEMRERLGSLIGPVAQ--------------------------------------RMW 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 V T H+ C I+++ + S F+I D S++L++ Sbjct: 96 VSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERLVK 133 >gi|315058935|gb|ADT73264.1| Helicase [Campylobacter jejuni subsp. jejuni S3] Length = 921 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + L+L A + +L LT TK AA EM R++E + Sbjct: 8 LALEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKEN 67 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 E+ K+ GK + + L T LK+ T AF I++ F L + Sbjct: 68 KTSECNELCKLLGKDKEELISLRDAKK-EEFLRT--ELKISTFDAFFGKILRVFALNLGL 124 Query: 154 TSHFAIADEE 163 +S F +++E Sbjct: 125 SSDFTMSEER 134 >gi|307284517|ref|ZP_07564679.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0860] gi|306503194|gb|EFM72448.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0860] Length = 791 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 51 NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + V T H+ Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + +F I D + K L++ Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 170 >gi|223934306|ref|ZP_03626227.1| UvrD/REP helicase [bacterium Ellin514] gi|223896769|gb|EEF63209.1| UvrD/REP helicase [bacterium Ellin514] Length = 689 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 70/194 (36%), Gaps = 34/194 (17%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ++L + +++ A + A AG+GKT ++ R+ ++ P ++L +T T Sbjct: 1 MLNLSTLNPQQRMAAETIRGPVLILAGAGTGKTRVITFRIAHMIERGVAPGSILAVTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++I S S + E P Sbjct: 61 KAAREMQERVNKLIPRPSKKSRD------------------------------EKPERPT 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ C I++Q + +F I D+ + A K L+ + + A Sbjct: 91 LCTFHSLCVRILRQHIEKLGYKKNFVIYDQTEQLG----AIKKILSQVSAKGEKTDPAAI 146 Query: 193 YEILEISNDEDIET 206 +L + + Sbjct: 147 LAMLSKYKNGGSQA 160 >gi|260174597|ref|ZP_05761009.1| ATP-dependent DNA helicase [Bacteroides sp. D2] gi|315922861|ref|ZP_07919101.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696736|gb|EFS33571.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 792 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 57/165 (34%), Gaps = 40/165 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHT 71 + I + Q A + V A AGSGKT +L ++ LL +P +L LT T Sbjct: 4 NYIDELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ + M +AR+L Sbjct: 64 NKAAREMKERIARQVG--------------------------MERARYL----------- 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ TS F I D SK L+ K Sbjct: 87 WMGTFHSIFSRILRAEATFIGFTSQFTIYDTADSKSLLRSIIKEM 131 >gi|227517687|ref|ZP_03947736.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0104] gi|229546558|ref|ZP_04435283.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1322] gi|293385045|ref|ZP_06630879.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis R712] gi|293389316|ref|ZP_06633777.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis S613] gi|307272535|ref|ZP_07553788.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0855] gi|307274690|ref|ZP_07555862.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2134] gi|307296389|ref|ZP_07576213.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0411] gi|312904260|ref|ZP_07763422.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0635] gi|312906034|ref|ZP_07765047.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 512] gi|312909380|ref|ZP_07768236.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 516] gi|227074842|gb|EEI12805.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0104] gi|229308303|gb|EEN74290.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1322] gi|291077723|gb|EFE15087.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis R712] gi|291081338|gb|EFE18301.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis S613] gi|306496044|gb|EFM65629.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0411] gi|306508619|gb|EFM77717.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2134] gi|306510820|gb|EFM79837.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0855] gi|310628029|gb|EFQ11312.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 512] gi|310632356|gb|EFQ15639.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0635] gi|311290404|gb|EFQ68960.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DAPTO 516] gi|315025780|gb|EFT37712.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2137] gi|315029104|gb|EFT41036.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4000] gi|315031452|gb|EFT43384.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0017] gi|315145224|gb|EFT89240.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX2141] gi|315151577|gb|EFT95593.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0012] gi|315157733|gb|EFU01750.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0312] gi|315161923|gb|EFU05940.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0645] gi|315575349|gb|EFU87540.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0309B] gi|315578806|gb|EFU90997.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0630] gi|315581379|gb|EFU93570.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0309A] Length = 791 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 51 NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + V T H+ Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + +F I D + K L++ Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 170 >gi|212692987|ref|ZP_03301115.1| hypothetical protein BACDOR_02488 [Bacteroides dorei DSM 17855] gi|237725615|ref|ZP_04556096.1| conserved hypothetical protein [Bacteroides sp. D4] gi|212664456|gb|EEB25028.1| hypothetical protein BACDOR_02488 [Bacteroides dorei DSM 17855] gi|229436302|gb|EEO46379.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 796 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 55/163 (33%), Gaps = 39/163 (23%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + + + Q A + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 3 NYLEELNESQRDAVLYNEGPSLVIAGAGSGKTRVLTYKIAYLLEQGYTPWSILALTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + + L + Sbjct: 63 AAREMKERIARQVG--------------------------------------DQARYLWM 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ +S+F I D SK LI+ K Sbjct: 85 GTFHSIFSRILRCEAQVIGFSSNFTIYDSSDSKSLIKSIVKEM 127 >gi|241205526|ref|YP_002976622.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859416|gb|ACS57083.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 826 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 71/192 (36%), Gaps = 43/192 (22%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D ++ EQ A + S V A AG+GKT +L R+ +L A PS +L +T T Sbjct: 54 DYLAGLNPEQTEAVETLEGSVLVLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTN 113 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ G Sbjct: 114 KAAREMKERIALLVGGAVE-------------------------------------GMPW 136 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ ++++ + S F I D + +LI++ + + LD+ K F Sbjct: 137 LGTFHSIGVKLLRRHGELVGLRSDFTILDTDDVVRLIKQ----LIQAEGLDDKRWPAKQF 192 Query: 193 YEILEISNDEDI 204 +++ ++ + Sbjct: 193 AGMVDTWKNKGL 204 >gi|296118283|ref|ZP_06836864.1| ATP-dependent DNA helicase PcrA [Corynebacterium ammoniagenes DSM 20306] gi|295968841|gb|EFG82085.1| ATP-dependent DNA helicase PcrA [Corynebacterium ammoniagenes DSM 20306] Length = 926 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 41/177 (23%) Query: 3 YHNSFQEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANA 60 Y N Q + L+ +Q+ A T S + A AGSGKT +L +R+ L+ Sbjct: 119 YRNRPQLNVNEDKLVEGLNPQQVEAVQHTGSPLLIIAGAGSGKTAVLTRRIAYLMGTRGV 178 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 P +L +T T AAAEM RV +++ + Sbjct: 179 APWEILAITFTNKAAAEMKERVGQLVGPVAE----------------------------- 209 Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I++Q + ++F I D + S++L+ K Sbjct: 210 ---------RMWVATFHSICVRILRQQAQLVPGLNTNFTIYDGDDSRRLLTMIAKDM 257 >gi|213692487|ref|YP_002323073.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523948|gb|ACJ52695.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458632|dbj|BAJ69253.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 897 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 40/158 (25%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ +Q A ++ + A AGSGKT +L +R+ +L A PS +L +T T Sbjct: 14 ELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 73 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ +I + + Sbjct: 74 KAAAEMRERLGSLIGPVAQ--------------------------------------RMW 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 V T H+ C I+++ + S F+I D S++L++ Sbjct: 96 VSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERLVK 133 >gi|187477915|ref|YP_785939.1| DNA helicase II [Bordetella avium 197N] gi|115422501|emb|CAJ49026.1| DNA helicase II [Bordetella avium 197N] Length = 750 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 77/224 (34%), Gaps = 46/224 (20%) Query: 16 LISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 ++ + +QL A A V A AGSGKT +L R+ L+ A P +L +T T Sbjct: 2 MLDKLNPQQLAAVTLEPLHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFGILAVTFTNK 61 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + + GL + Sbjct: 62 AAREMLMRMAATMPIDTR--------------------------------------GLWI 83 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ +A + F I D A K L + +D+ + + Sbjct: 84 GTFHGLCNRMLRAHHRDAGLPQAFQILDTADQLA----AIKRLLKAQGIDDEKYPPRDVQ 139 Query: 194 EILEISNDEDIETLISDI--ISNRTALKLIFFFFSYLWRRKIIE 235 + S ++ + + R +++ + + R +++ Sbjct: 140 RFINGSKEDGLRPAEVEAWDAHRRKLVEIYQLYEAQCQREGVVD 183 >gi|331699083|ref|YP_004335322.1| ATP-dependent DNA helicase PcrA [Pseudonocardia dioxanivorans CB1190] gi|326953772|gb|AEA27469.1| ATP-dependent DNA helicase PcrA [Pseudonocardia dioxanivorans CB1190] Length = 800 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 87/250 (34%), Gaps = 71/250 (28%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 + + + A AGSGKT +L R+ LL + HP ++ +T T AAAEM Sbjct: 28 NPRQVEAVTHAGSPLLIVAGAGSGKTRVLTHRIAWLLAERHVHPGEIMSITFTNKAAAEM 87 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ + + V T H+ Sbjct: 88 KERVDALVGRRA--------------------------------------NAMWVSTFHS 109 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST------------------LASI 180 C I+++ + S F++ D + S++L+ + L + Sbjct: 110 MCVRILRREAKHLGVRSAFSVYDADDSRRLVGIVARDLELDPKKFSARGLAAQISNLKNE 169 Query: 181 MLDNNEELKKA--------------FYEILEISNDEDIETLISDIISNRTALKLIFFFFS 226 +L ++ ++A + L +N D + LI + +S L + ++ Sbjct: 170 LLSADDATERAGNDFERRVAEVYVGYQSRLRQANAFDFDDLIMETVSLLARLPAVAEYYR 229 Query: 227 YLWRRKIIEK 236 +R ++++ Sbjct: 230 RRFRHVLVDE 239 >gi|290580138|ref|YP_003484530.1| putative exonuclease [Streptococcus mutans NN2025] gi|254997037|dbj|BAH87638.1| putative exonuclease [Streptococcus mutans NN2025] Length = 1212 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 27/221 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++++R++ +L L T T AA E+ Sbjct: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + IT L+++ + L L + T+ AF Sbjct: 89 ERLEKKITEQLRLTNDTA-------------------LKQFLSEQLLGLQTADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ Q+ I+ +F I D+ + L + + EL Sbjct: 130 TQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVR--NF 187 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + + + II K+ F + ++ + ++ Sbjct: 188 AGNRKDSSNFRQII-----YKIYDFSQATDNPQRWLLENFL 223 >gi|168483212|ref|ZP_02708164.1| recombination helicase AddA [Streptococcus pneumoniae CDC1873-00] gi|168493077|ref|ZP_02717220.1| recombination helicase AddA [Streptococcus pneumoniae CDC3059-06] gi|172043538|gb|EDT51584.1| recombination helicase AddA [Streptococcus pneumoniae CDC1873-00] gi|183576624|gb|EDT97152.1| recombination helicase AddA [Streptococcus pneumoniae CDC3059-06] Length = 1216 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++V+R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMVERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVDLKQHLGCQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L+E + + + + K++F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKESFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + +S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223 >gi|57238504|ref|YP_179635.1| ATP-dependent DNA helicase UvrD [Campylobacter jejuni RM1221] gi|218563082|ref|YP_002344861.1| putative recombination protein RecB [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|57167308|gb|AAW36087.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni RM1221] gi|112360788|emb|CAL35588.1| putative helicase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315927429|gb|EFV06767.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 921 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + L+L A + +L LT TK AA EM R++E + Sbjct: 8 LALEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKEN 67 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 E+ K+ GK + + L T LK+ T AF I++ F L + Sbjct: 68 KTSECNELCKLLGKDKEELISLRDAKK-EEFLRT--ELKISTFDAFFGKILRVFALNLGL 124 Query: 154 TSHFAIADEE 163 +S F +++E Sbjct: 125 SSDFTMSEER 134 >gi|312898542|ref|ZP_07757932.1| ATP-dependent DNA helicase PcrA [Megasphaera micronuciformis F0359] gi|310620461|gb|EFQ04031.1| ATP-dependent DNA helicase PcrA [Megasphaera micronuciformis F0359] Length = 738 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 74/220 (33%), Gaps = 46/220 (20%) Query: 20 TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 QL A V+A AGSGKT +L R+ RLL P +L +T T AA EM Sbjct: 14 LNERQLEAVMHTEGPLSVTAGAGSGKTKVLTCRIARLLEIGTDPYRILAITFTNKAAKEM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ + + + T H+ Sbjct: 74 RERVQNLVGVAAE--------------------------------------RIWLSTFHS 95 Query: 139 FCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC +++ + T +F I D L+ KS L + LD+ + + + Sbjct: 96 FCAKLLRFEIDGFLGYTKNFTIYDSSDQVTLM----KSCLKELNLDDKQFPPRTVLGTVS 151 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 + + + + + + +Y K ++ + Sbjct: 152 SAKNALLRA--DEFAKSADDFYTLKVSEAYTLYEKKLKDN 189 >gi|284040435|ref|YP_003390365.1| UvrD/REP helicase [Spirosoma linguale DSM 74] gi|283819728|gb|ADB41566.1| UvrD/REP helicase [Spirosoma linguale DSM 74] Length = 764 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 39/165 (23%) Query: 13 TIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 +D IS Q A + + A AGSGKT +L R+ L+ P +L LT T Sbjct: 1 MVDYISGLNDPQREAVMHGSGPLMIIAGAGSGKTRVLTYRIAHLIENGVDPFRILSLTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM +R+ +++ + + Sbjct: 61 NKAAGEMRNRIEKVVGTEAR--------------------------------------NI 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ TS+F+I D + SK L+ K Sbjct: 83 WMGTFHSVFAKILRIEAKAIGYTSNFSIYDTDDSKSLLRSIVKEM 127 >gi|24379891|ref|NP_721846.1| putative exonuclease RexA [Streptococcus mutans UA159] gi|81588281|sp|Q8DT76|ADDA_STRMU RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|24377868|gb|AAN59152.1|AE014982_1 putative exonuclease RexA [Streptococcus mutans UA159] Length = 1212 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 78/221 (35%), Gaps = 27/221 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++++R++ +L L T T AA E+ Sbjct: 29 TPEQIEAIYTSGTNILVSASAGSGKTFVMIERIMDKILRGVTIDQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + IT L+++ + L L + T+ AF Sbjct: 89 ERLEKKITEQLRLTNDTA-------------------LKQFLSEQLLGLQTADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ Q+ I+ +F I D+ + L + + EL Sbjct: 130 TQKLVTQYGYTLGISPNFRILQDKSEQDLLKNDVFDDLFTDYRTGDQAELFTKLVR--NF 187 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + + + II K+ F + ++ + ++ Sbjct: 188 AGNRKDSSNFRQII-----YKIYDFSQATDNPQRWLLENFL 223 >gi|255531341|ref|YP_003091713.1| UvrD/REP helicase [Pedobacter heparinus DSM 2366] gi|255344325|gb|ACU03651.1| UvrD/REP helicase [Pedobacter heparinus DSM 2366] Length = 769 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 40/174 (22%) Query: 14 IDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D ++ +Q A + T+ A + A AGSGKT ++ RV L+ +L LT T Sbjct: 1 MDYLAGLNPQQRAAVENTQGPAMIVAGAGSGKTRVITYRVAHLIEKGVDAFNILVLTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 A+ +M R++++I + + Sbjct: 61 KASKDMRERIMKVIGPEAK--------------------------------------NIW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNN 185 + T H+ I++ + S+F I D + SK LI + L + + N Sbjct: 83 MGTFHSVFAKILRVEAEKIGYPSNFTIYDTDDSKSLIRTILREMQLDDKLYNAN 136 >gi|239638038|ref|ZP_04678997.1| ATP-dependent DNA helicase PcrA [Staphylococcus warneri L37603] gi|239596321|gb|EEQ78859.1| ATP-dependent DNA helicase PcrA [Staphylococcus warneri L37603] Length = 730 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ +EQ A + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LVKNMNAEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ + + + + Sbjct: 64 AAKEMKARVEQLVGEEAQV--------------------------------------IWM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D K +I++ K+ Sbjct: 86 STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127 >gi|229548667|ref|ZP_04437392.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 29200] gi|307269775|ref|ZP_07551105.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4248] gi|312953106|ref|ZP_07771955.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0102] gi|229306183|gb|EEN72179.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 29200] gi|306513885|gb|EFM82487.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX4248] gi|310628940|gb|EFQ12223.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0102] gi|315036100|gb|EFT48032.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0027] gi|315153983|gb|EFT97999.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0031] Length = 791 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 51 NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + V T H+ Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + +F I D + K L++ Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 170 >gi|187935645|ref|YP_001884643.1| helicase, UvrD/Rep family [Clostridium botulinum B str. Eklund 17B] gi|187723798|gb|ACD25019.1| helicase, UvrD/Rep family [Clostridium botulinum B str. Eklund 17B] Length = 750 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 60/163 (36%), Gaps = 40/163 (24%) Query: 14 IDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++L S EQ A + A AGSGKT +L R+ ++ P +L +T T Sbjct: 1 MELKSLLNKEQYEGAITIDGQLLILAGAGSGKTRVLTYRMAHMIENIGIAPYNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV+ +I + + + Sbjct: 61 NKAAKEMKDRVISLIGSKAE--------------------------------------NM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + T H+ C I+++ + S+F I D K LI+E K Sbjct: 83 WISTFHSTCVRILRREIDKIGYNSNFTIYDTSDQKVLIKECMK 125 >gi|307289586|ref|ZP_07569530.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0109] gi|306499400|gb|EFM68773.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0109] gi|315164585|gb|EFU08602.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX1302] Length = 791 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 51 NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + V T H+ Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + +F I D + K L++ Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 170 >gi|237709818|ref|ZP_04540299.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229455911|gb|EEO61632.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 796 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 55/163 (33%), Gaps = 39/163 (23%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + + + Q A + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 3 NYLEELNESQRDAVLYNEGPSLVIAGAGSGKTRVLTYKIAYLLEQGYTPWSILALTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + + L + Sbjct: 63 AAREMKERIARQVG--------------------------------------DQARYLWM 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ +S+F I D SK LI+ K Sbjct: 85 GTFHSIFSRILRCEAQVIGFSSNFTIYDSSDSKSLIKSIVKEM 127 >gi|99081864|ref|YP_614018.1| ATP-dependent DNA helicase Rep [Ruegeria sp. TM1040] gi|99038144|gb|ABF64756.1| ATP-dependent DNA helicase, Rep family [Ruegeria sp. TM1040] Length = 814 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 71/193 (36%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 +D ++ + + + D + A AG+GKT L R++ LL A + +L +T T Sbjct: 27 YLDGLNPAQRDAVETLD--GPVLMLAGAGTGKTKALTTRIVHLLNTNKARTNEILAVTFT 84 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ + G Sbjct: 85 NKAAREMKDRVGRMLGQPAE-------------------------------------GMP 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C ++++ + S+F I D + +L+++ + + +D+ + Sbjct: 108 WLGTFHSICVKLLRRHAELVGLKSNFTILDTDDQIRLLKQ----LIQAAGIDDKRWPARM 163 Query: 192 FYEILEISNDEDI 204 I++ + + Sbjct: 164 LANIIDDWKNRAL 176 >gi|308270800|emb|CBX27410.1| hypothetical protein N47_H22320 [uncultured Desulfobacterium sp.] Length = 657 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 57/242 (23%), Positives = 89/242 (36%), Gaps = 43/242 (17%) Query: 1 MIYHNSFQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN 59 MI N + I + + Q A V A AGSGKT L RV RL+ Sbjct: 1 MIKENEIMQQKFCISYEKELNASQYEAVVHTKGPLLVIAGAGSGKTRTLTYRVARLVEEG 60 Query: 60 AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119 P+++L LT T+ A+ EM +++A + Sbjct: 61 TPPASILLLTFTRKASQEM-----------------------------------LNRATN 85 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 LL E G T H+F I++++ S F I D + S+ LI +K L + Sbjct: 86 LLDKRCEGVSG---GTFHSFANYILRRYSRYIGFDSGFNILDRDDSEALIGIVRKEMLNT 142 Query: 180 IMLDNNEELKKAFYEILEISNDE--DIETLIS-DIISNRTALKLIFFFFSYLWRRKIIEK 236 + K+ I + ++ I +I D I +++I RRKI+ Sbjct: 143 SKHSSFPR-KQTLANIFGKAANKVLSISDVIQNDYIHFEDDIEMIEMIHKEYARRKILHS 201 Query: 237 SL 238 L Sbjct: 202 YL 203 >gi|205356088|ref|ZP_03222855.1| putative helicase [Campylobacter jejuni subsp. jejuni CG8421] gi|205345931|gb|EDZ32567.1| putative helicase [Campylobacter jejuni subsp. jejuni CG8421] Length = 921 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + L+L A + +L LT TK AA EM R++E + Sbjct: 8 LALEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKEN 67 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 E+ K+ GK + + L T LK+ T AF I++ F L + Sbjct: 68 KTSECNELCKLLGKDKEELISLRDAKK-EEFLRT--ELKISTFDAFFGKILRVFALNLGL 124 Query: 154 TSHFAIADEE 163 +S F +++E Sbjct: 125 SSDFTMSEER 134 >gi|149928113|ref|ZP_01916360.1| UvrD/REP helicase [Limnobacter sp. MED105] gi|149823199|gb|EDM82436.1| UvrD/REP helicase [Limnobacter sp. MED105] Length = 743 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 79/226 (34%), Gaps = 46/226 (20%) Query: 14 IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 + L+ EQL A P SA + A AGSGKT +L R+ L+ P+ +L +T T Sbjct: 1 MSLLDSLNPEQLAAVTLPRESALILAGAGSGKTKVLTARIAWLIQTGQVGPNGVLAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM HR+ ++ + Sbjct: 61 NKAAKEMLHRISTMLPI--------------------------------------NTRSM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H C +++ EA + F I D + A K + +D + K Sbjct: 83 WVGTFHGLCNRMLRAHWKEAGLPQAFQILDMQDQLS----AIKRMYKVLGIDAEKFPPKQ 138 Query: 192 FYEILEISNDEDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 + + D+ + + +R ++L + + R +++ Sbjct: 139 LSYFVGSAKDQGLRPKDVEAHDEYHRMMVRLYEAYEAQCQREGVVD 184 >gi|146300673|ref|YP_001195264.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101] gi|146155091|gb|ABQ05945.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101] Length = 778 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 39/165 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 + ID +++ + + +L D + A AGSGKT +L R+ L+ +L LT T Sbjct: 3 KYIDQLNEAQRQPVLKKD--GPMIIIAGAGSGKTRVLTIRIAYLMAQGVDAFNILSLTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM HR+ +I+ A + L Sbjct: 61 NKAAREMKHRIADIVGASEAKN-------------------------------------L 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ S+F I D + S +LI K Sbjct: 84 WMGTFHSIFARILRSESDHLGYPSNFTIYDSQDSARLISSIIKEM 128 >gi|329667843|gb|AEB93791.1| ATP-dependent DNA helicase [Lactobacillus johnsonii DPC 6026] Length = 748 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 39/168 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 SE L ++ V A AGSGKT +L +R+ L+ P +L + Sbjct: 1 MSEETILAGLNPQQKKAVQCTEGPLLVVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAI 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV +++ + Sbjct: 61 TFTNKAATEMKERVQKLLGPAA-------------------------------------- 82 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T HA C I+++ + +++F+IAD + LI+ +K Sbjct: 83 DSVWMSTFHALCVRILRRDAEKIGYSNNFSIADSAEQLTLIKRIEKDL 130 >gi|329929647|ref|ZP_08283344.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. HGF5] gi|328935973|gb|EGG32428.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. HGF5] Length = 673 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 72/192 (37%), Gaps = 45/192 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 + + ++ + + + A+D + A AGSGKT +L R+ L+ A P ++L +T Sbjct: 8 DAVRRLNPQQRQAVEATD--GPLLIMAGAGSGKTRVLTHRIAYLIATRKAAPWSILAITF 65 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV +++ Sbjct: 66 TNKAAREMQERVSKLVGREGQ--------------------------------------D 87 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + V T H+ C I+++ TS+F+I D +I ++ + +D + K Sbjct: 88 IWVSTFHSMCVRILRRDIERIGFTSNFSILDSTDQLSVI----RNVMKQHNIDPKKFEPK 143 Query: 191 AFYEILEISNDE 202 A + + +E Sbjct: 144 AIQAAMSAAKNE 155 >gi|289167909|ref|YP_003446178.1| exonuclease RexA [Streptococcus mitis B6] gi|288907476|emb|CBJ22313.1| exonuclease RexA [Streptococcus mitis B6] Length = 1216 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ SD D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISQQIQESD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L++ + + + + K+ F +L Sbjct: 130 TQKFLGKHGYLIDIAPNFRILQNQSEQLLLK---NEVFHEVFEAHYQSKQKETFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + +S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223 >gi|226365048|ref|YP_002782831.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus opacus B4] gi|226243538|dbj|BAH53886.1| ATP-dependent DNA helicase UvrD1 [Rhodococcus opacus B4] Length = 827 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 87/254 (34%), Gaps = 75/254 (29%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ + A AGSGKT +L +R+ LL P +L +T T AAAEM Sbjct: 35 NPPQREAVVHAGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFTNKAAAEM 94 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ + + V T H+ Sbjct: 95 RERVAHLVGPRA--------------------------------------NSMWVSTFHS 116 Query: 139 FCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST------------------LAS 179 C I++ Q L + S+F+I D + S++L+ K L + Sbjct: 117 SCVRILRAQAALLPGLNSNFSIYDADDSRRLLTMISKDLNIDTKRYSARLLATHISNLKN 176 Query: 180 IMLDNNEELKKA-----------------FYEILEISNDEDIETLISDIISNRTALKLIF 222 ++D + A + + L +N D + LI + ++ A + Sbjct: 177 ELVDPEQASADADKDPAELPRLIAKVYGHYQQRLRSANALDFDDLIGETVAMLQAFPQVA 236 Query: 223 FFFSYLWRRKIIEK 236 ++ +R ++++ Sbjct: 237 EYYRRRFRHVLVDE 250 >gi|189502292|ref|YP_001958009.1| hypothetical protein Aasi_0914 [Candidatus Amoebophilus asiaticus 5a2] gi|189497733|gb|ACE06280.1| hypothetical protein Aasi_0914 [Candidatus Amoebophilus asiaticus 5a2] Length = 913 Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats. Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 4/146 (2%) Query: 39 NAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 AGSGKT++LV+ L+L L A + +L +T T A EM R+L + + + +L Sbjct: 10 AAGSGKTYVLVKAYLQLALRAPLYFQRILAVTFTNRATQEMKQRILNSLHDIAQGKESLL 69 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157 + E+ + G +K +A+ +L +L V TI +F ++I++ F E I F Sbjct: 70 TQELNQANGWD-SKELQKRAQAVLSKVLHNYDHFSVGTIDSFLQSIVRNFSKELGIQHGF 128 Query: 158 AIADEEQSKKLIEEAKKSTLASIMLD 183 I E + ++ + + D Sbjct: 129 TI--EMDQETILNYIIDDVINTANQD 152 >gi|255973804|ref|ZP_05424390.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T2] gi|255966676|gb|EET97298.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T2] Length = 746 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 6 NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 65 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + V T H+ Sbjct: 66 KERVNKLLETGGE--------------------------------------DVWVSTFHS 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + +F I D + K L++ Sbjct: 88 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 125 >gi|49484146|ref|YP_041370.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus MRSA252] gi|295428487|ref|ZP_06821114.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus EMRSA16] gi|68605635|sp|Q6GFF2|PCRA_STAAR RecName: Full=ATP-dependent DNA helicase pcrA gi|49242275|emb|CAG40982.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus MRSA252] gi|295127469|gb|EFG57108.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus EMRSA16] Length = 730 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ +EQ A + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ + + + + Sbjct: 64 AAREMKERVQKLVGDQAEV--------------------------------------IWM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D K +I++ K+ Sbjct: 86 STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127 >gi|311107257|ref|YP_003980110.1| DNA helicase II [Achromobacter xylosoxidans A8] gi|310761946|gb|ADP17395.1| DNA helicase II [Achromobacter xylosoxidans A8] Length = 764 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 78/224 (34%), Gaps = 46/224 (20%) Query: 16 LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 ++ + EQ A + A V A AGSGKT +L R+ L+ A P LL +T T Sbjct: 2 MLEKLNPEQRAAVTLEPQHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFGLLAVTFTNK 61 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ I+ + GL + Sbjct: 62 AAREMLARMSAILPIDTR--------------------------------------GLWI 83 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ +A + F I D A K + + +D+ + + Sbjct: 84 GTFHGLCNRMLRAHHRDAGLPQSFQILDVTDQLA----AIKRLMKANGVDDEKYPPRDVQ 139 Query: 194 EILEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKIIE 235 + + +E + + R +++ + + R +++ Sbjct: 140 RFINGAKEEGLRPADVEAYDAHRRRLIEIYQLYEAQCLREGVVD 183 >gi|256844935|ref|ZP_05550393.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_36A2] gi|256718494|gb|EEU32049.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_36A2] Length = 737 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 41/166 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 + ++ ++ + E AS S + A AGSGKT + R+ ++ P ++L + Sbjct: 2 NLNLLEKLNDKQRE--AASQIDGSILILAGAGSGKTRTITYRIAHMIENVGISPYSILAV 59 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV E++ + Sbjct: 60 TFTNKAAKEMRERVEELVGNIAKAC----------------------------------- 84 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + T H+F +++ + E S+F I D + K++++ K Sbjct: 85 ---TISTFHSFGMRLLRMYAKEVEYNSNFTIYDTDDQKRIVKAILK 127 >gi|86149295|ref|ZP_01067526.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152901|ref|ZP_01071106.1| putative helicase [Campylobacter jejuni subsp. jejuni HB93-13] gi|88596029|ref|ZP_01099266.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni 84-25] gi|85840077|gb|EAQ57335.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni CF93-6] gi|85843786|gb|EAQ60996.1| putative helicase [Campylobacter jejuni subsp. jejuni HB93-13] gi|88190870|gb|EAQ94842.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni 84-25] gi|284926688|gb|ADC29040.1| putative recombination protein RecB [Campylobacter jejuni subsp. jejuni IA3902] gi|315930547|gb|EFV09587.1| uvrD/REP helicase family protein [Campylobacter jejuni subsp. jejuni 305] Length = 921 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 3/130 (2%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + L+L A + +L LT TK AA EM R++E + Sbjct: 8 LALEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKEN 67 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 E+ K+ GK + + L T LK+ T AF I++ F L + Sbjct: 68 KTSECNELCKLLGKDKEELISLRDAKK-EEFLRT--ELKISTFDAFFGKILRVFALNLGL 124 Query: 154 TSHFAIADEE 163 +S F +++E Sbjct: 125 SSDFTMSEER 134 >gi|296327497|ref|ZP_06870043.1| ATP-dependent DNA helicase PcrA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155323|gb|EFG96094.1| ATP-dependent DNA helicase PcrA [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 739 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 64/163 (39%), Gaps = 40/163 (24%) Query: 14 IDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++L+ + +Q AS S + A AG+GKT + R+ ++ P ++L +T T Sbjct: 5 LNLLEKLNDKQKEAASQIDGSILILAGAGAGKTRTITYRIAHMIENVGISPYSILAVTFT 64 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +++ + + Sbjct: 65 NKAAKEMRERVEDLVGDIAKVC-------------------------------------- 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + T H+F +++ + EA S+F I D + KK+++ K Sbjct: 87 TISTFHSFGMRLLRMYAKEAGYNSNFTIYDTDDQKKIVKAILK 129 >gi|255971180|ref|ZP_05421766.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T1] gi|256761491|ref|ZP_05502071.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T3] gi|255962198|gb|EET94674.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T1] gi|256682742|gb|EEU22437.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T3] gi|323479917|gb|ADX79356.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis 62] Length = 746 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 6 NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 65 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + V T H+ Sbjct: 66 KERVNKLLETGGE--------------------------------------DVWVSTFHS 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + +F I D + K L++ Sbjct: 88 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 125 >gi|7007365|emb|CAB75588.1| putative DNA helicase [Prochlorococcus marinus str. PAC1] Length = 512 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 17/171 (9%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 ++ Q A D V A AGSGKT L R+ L+ PS++L +T T Sbjct: 8 FLNGLNEAQSHAVDHFHGPLLVVAGAGSGKTRALTHRIAHLITEYKVDPSSILAVTFTNK 67 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ ++ ++ ++ + + E L + Sbjct: 68 AAREMKDRLELLLAKRLSSLTHGKPWRALQVAEQREIRNRIHR---------EISRELWI 118 Query: 134 QTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178 T HA +++ +F + T F+I DE ++ LI+E L Sbjct: 119 GTFHALFSRLLRFDIDKFKDPEGLTWTKQFSIYDETDAQSLIKEIVTQDLQ 169 >gi|86133361|ref|ZP_01051943.1| UvrD/REP helicase [Polaribacter sp. MED152] gi|85820224|gb|EAQ41371.1| UvrD/REP helicase [Polaribacter sp. MED152] Length = 774 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 78/217 (35%), Gaps = 48/217 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D +++ + + +L D + A AGSGKT +L R+ L+ + +L LT T Sbjct: 4 YLDSLNEPQKQAVLQKD--GPMIIIAGAGSGKTRVLTYRIAHLMQSGVDAFNILSLTFTN 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + L Sbjct: 62 KAAREMKERIAGVVGQSEAKN-------------------------------------LW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNE----- 186 + T H+ I++ + S+F I D + S +L+ K L + Sbjct: 85 MGTFHSVFARILRSEADKLGFPSNFTIYDTQDSVRLMGTIIKEMNLDKERYKPKQILGRI 144 Query: 187 -ELKKAFYEILEISNDEDIETLISDIISNRTALKLIF 222 K + + N+ D++ +D+ ++R + I+ Sbjct: 145 SSFKNSLITVRAYFNNSDLQE--ADMHASRPKVGDIY 179 >gi|315605038|ref|ZP_07880092.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313317|gb|EFU61380.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 180 str. F0310] Length = 932 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 ++ + + A AGSGKT +L R+ LL A +L +T T AAAEM Sbjct: 91 NDRQREAVTHAGAPLLILAGAGSGKTRVLTHRIAYLLATGRARAGQILAITFTNKAAAEM 150 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R ++ + + V T H+ Sbjct: 151 RERAGALVGGDAR--------------------------------------RMWVSTFHS 172 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C +++ A ++S F I D + S++LI+ K+ Sbjct: 173 ACVRLLRYEHEAAGLSSSFTIYDAQDSQRLIQMVLKAM 210 >gi|288802440|ref|ZP_06407879.1| ATP-dependent helicase PcrA [Prevotella melaninogenica D18] gi|288334968|gb|EFC73404.1| ATP-dependent helicase PcrA [Prevotella melaninogenica D18] Length = 851 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 62/161 (38%), Gaps = 38/161 (23%) Query: 17 ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 ++ Q A + T + V A AGSGKT +L ++ LL P +L LT T AA Sbjct: 11 LAALNESQREAVEYCTGPSLVIAGAGSGKTRVLTYKIAYLLNKGLAPWNILALTFTNKAA 70 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ +I TA A+HL + T Sbjct: 71 REMKERIAQITTA--------------------------KDAQHLYM-----------GT 93 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ I+++ S+F I DE S+ LI+ K+ Sbjct: 94 FHSIFARILRREGEAIGFGSNFTIYDENDSRSLIKSIVKAL 134 >gi|237666682|ref|ZP_04526667.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum E4 str. BoNT E BL5262] gi|237657881|gb|EEP55436.1| ATP-dependent DNA helicase PcrA [Clostridium butyricum E4 str. BoNT E BL5262] Length = 757 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 59/166 (35%), Gaps = 40/166 (24%) Query: 13 TIDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 +DL + EQ A+ + A AGSGKT +L R+ ++ N P +L +T Sbjct: 1 MLDLKNLLNKEQYEGATTIEGQVLILAGAGSGKTRVLTHRIAHMVEDLNIAPYNILAITF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV +I + Sbjct: 61 TNKAAKEMKDRVRALIGECAE--------------------------------------N 82 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T H+ C I+ + + S F I D K L++E K+ Sbjct: 83 MWISTFHSTCVKILIREIDKIGYKSSFTIYDSSDQKTLVKECMKTV 128 >gi|319937196|ref|ZP_08011603.1| ATP-dependent DNA helicase [Coprobacillus sp. 29_1] gi|319807562|gb|EFW04155.1| ATP-dependent DNA helicase [Coprobacillus sp. 29_1] Length = 715 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 39/157 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ A+ + A AGSGKT +L R+ L+ P +L +T T AA EM Sbjct: 8 NPRQKEAATYLDSHLRIIAGAGSGKTRVLTYRIAYLIEEVGIEPRHILAITFTNKAANEM 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV+ ++ ++ GG + TIH+ Sbjct: 68 KERVIGLLGDYA--------------------------------------GGSLLCTIHS 89 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 C I++Q N ++F I DEE K L+++ K Sbjct: 90 LCVRILRQNIRALNYPNNFIIMDEEDQKSLLKKIFKE 126 >gi|298246492|ref|ZP_06970298.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963] gi|297553973|gb|EFH87838.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963] Length = 837 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 63/184 (34%), Gaps = 44/184 (23%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLL 66 E +D +++ + + + + A GSGKT ++ R+ L+ + P +L Sbjct: 2 LEQINLLDGLNEPQRQ--AVTTTQGPVLILAGPGSGKTRVITHRIAYLVQHEHVSPWHIL 59 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ +++ + Sbjct: 60 AVTFTNKAAREMRERMEKLVGVSASKD--------------------------------- 86 Query: 127 TPGGLKVQTIHAFCEAIMQQFP---LEANITSHFAIADEEQSKKLIEEAKKST-LASIML 182 + + T HA C +++ L + F I D + L+++A + L + Sbjct: 87 ----MSIGTFHAICARVLRMEADALLPLGLNRSFVILDTDDQLSLVKQAIRELNLDEKLY 142 Query: 183 DNNE 186 N Sbjct: 143 RPNA 146 >gi|148241321|ref|YP_001226478.1| UvrD/REP helicase [Synechococcus sp. RCC307] gi|147849631|emb|CAK27125.1| UvrD/REP helicase [Synechococcus sp. RCC307] Length = 784 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 69/173 (39%), Gaps = 17/173 (9%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + ++ Q A D V A AGSGKT L R+ L+ A P+ +L +T T Sbjct: 1 MSFLAGLNDAQRRAVDHHEGPLLVVAGAGSGKTRALTHRIAHLIGEHGADPAQILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R L+ ++ ++ + G P + +++ L Sbjct: 61 NKAAREMKER------LQLLLAQKLAQSQFGQPWGTLPAVEQRQLRSRIEREVIK---EL 111 Query: 132 KVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178 + T HA +++ +F + T F+I DE ++ L++E L Sbjct: 112 WIGTFHALFSRLLRFDIDKFKDPEGLCWTKQFSIYDEADAQSLVKEIVTQELQ 164 >gi|315156747|gb|EFU00764.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TX0043] Length = 791 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 51 NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 110 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + V T H+ Sbjct: 111 KERVNKLLETGGE--------------------------------------DVWVSTFHS 132 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + +F I D + K L++ Sbjct: 133 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 170 >gi|257080987|ref|ZP_05575348.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis E1Sol] gi|256989017|gb|EEU76319.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis E1Sol] Length = 752 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 12 NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 71 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + V T H+ Sbjct: 72 KERVNKLLETGGE--------------------------------------DVWVSTFHS 93 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + +F I D + K L++ Sbjct: 94 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 131 >gi|289577825|ref|YP_003476452.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter italicus Ab9] gi|289527538|gb|ADD01890.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter italicus Ab9] Length = 711 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 42/168 (25%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + +D ++ + E ++ ++ + A AGSGKT +L R+ L+ PS +L + Sbjct: 1 MNSILDNLNDKQKEAVMTTE--GPLLILAGAGSGKTRVLTHRIAYLIKEKKISPSNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV E++ Sbjct: 59 TFTNKAAEEMKTRVEELLGYI--------------------------------------- 79 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G L V T H+ I+++ + +F I D K LI+E K Sbjct: 80 GDLWVSTFHSASVRILRRDIDKIGYDRNFVIFDTTDQKALIQECLKEL 127 >gi|86605998|ref|YP_474761.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-3-3Ab] gi|86554540|gb|ABC99498.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-3-3Ab] Length = 776 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 26/176 (14%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D ++ + + V A AGSGKT L R+ L+ P +L +T T Sbjct: 1 MLDALNPAQRQ--AVHHFCGPLLVVAGAGSGKTRTLAYRIAHLIRHYRVDPEEILAVTFT 58 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET-PGG 130 AA EM R+ ++ E + G + + ++A L + Sbjct: 59 NKAAREMKERIEQLFAE----------QEAQEQFGIPLEELEPAQATRLKSAVYHRWIKP 108 Query: 131 LKVQTIHAFCEAIMQQFPLEAN--ITS-------HFAIADEEQSKKLIEEAKKSTL 177 L + T H+ I++ LE +F+I DE ++ L++E L Sbjct: 109 LWIGTFHSLFAQILR---LEIEKYQDPKGRKWTRNFSIFDESDAQSLVKEIVTKQL 161 >gi|29375317|ref|NP_814471.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis V583] gi|256617608|ref|ZP_05474454.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 4200] gi|256854412|ref|ZP_05559776.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T8] gi|256959857|ref|ZP_05564028.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Merz96] gi|256964441|ref|ZP_05568612.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis HIP11704] gi|257083649|ref|ZP_05578010.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Fly1] gi|257086081|ref|ZP_05580442.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis D6] gi|257089148|ref|ZP_05583509.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis CH188] gi|257415291|ref|ZP_05592285.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis AR01/DG] gi|257418333|ref|ZP_05595327.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis T11] gi|300861762|ref|ZP_07107842.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TUSoD Ef11] gi|29342777|gb|AAO80541.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis V583] gi|256597135|gb|EEU16311.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ATCC 4200] gi|256709972|gb|EEU25016.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis T8] gi|256950353|gb|EEU66985.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Merz96] gi|256954937|gb|EEU71569.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis HIP11704] gi|256991679|gb|EEU78981.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis Fly1] gi|256994111|gb|EEU81413.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis D6] gi|256997960|gb|EEU84480.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis CH188] gi|257157119|gb|EEU87079.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis ARO1/DG] gi|257160161|gb|EEU90121.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis T11] gi|300848287|gb|EFK76044.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis TUSoD Ef11] Length = 752 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 12 NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 71 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + V T H+ Sbjct: 72 KERVNKLLETGGE--------------------------------------DVWVSTFHS 93 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + +F I D + K L++ Sbjct: 94 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 131 >gi|82751561|ref|YP_417302.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122] gi|82657092|emb|CAI81529.1| ATP-dependent DNA helicase [Staphylococcus aureus RF122] Length = 730 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ +EQ A + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ + + + + Sbjct: 64 AAREMKERVQKLVGDQAEV--------------------------------------IWM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D K +I++ K+ Sbjct: 86 STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127 >gi|194367719|ref|YP_002030329.1| DNA-dependent helicase II [Stenotrophomonas maltophilia R551-3] gi|194350523|gb|ACF53646.1| DNA helicase II [Stenotrophomonas maltophilia R551-3] Length = 730 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 67/196 (34%), Gaps = 45/196 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67 + S +D ++ + E + A P V A AGSGKT +L R+ L + + Sbjct: 2 DVSHLLDGLNPAQREAVSA--PPGHHLVLAGAGSGKTRVLTHRIAWLHEVDGVPTHGIFA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM HR+ + S Sbjct: 60 VTFTNKAAGEMRHRIDAQLPNGSR------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G+ + T H +++ +A + F + D + +L K + ++ LD+ + Sbjct: 84 --GMWIGTFHGLANRLLRLHWQDAKLPEGFQVMDSDDQLRL----VKRVVQALELDDGKY 137 Query: 188 LKKAFYEILEISNDED 203 K + DE Sbjct: 138 PAKQIAWWINAQKDEG 153 >gi|327438551|dbj|BAK14916.1| superfamily I DNA and RNA helicase [Solibacillus silvestris StLB046] Length = 752 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 69/190 (36%), Gaps = 43/190 (22%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L++ +Q A + A AGSGKT +L R+ L++ +PS +L +T T Sbjct: 7 NLVAGMNPQQAEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLVVEREVYPSKILAITFTN 66 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ I+ + S + Sbjct: 67 KAAREMRERIDGILGNGTTES-------------------------------------MW 89 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T H+ C I+++ + F+I D +I K+ L +D + +A Sbjct: 90 VSTFHSMCVRILRRNIDRIGYSKSFSILDSSDQLTVI----KNILKQDNIDPKKYDPRAI 145 Query: 193 YEILEISNDE 202 + + +E Sbjct: 146 LNTISSAKNE 155 >gi|317968538|ref|ZP_07969928.1| UvrD/REP helicase [Synechococcus sp. CB0205] Length = 792 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 77/218 (35%), Gaps = 28/218 (12%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 + +S Q A D V A AGSGKT L R+ ++ P+ LL +T T Sbjct: 1 MSFLSGLNDAQRKAVDHHEGPLLVVAGAGSGKTRALTHRIAHMIGQHGVDPAELLAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ + L+ D + R + E L Sbjct: 61 NKAAREMKERLELLLA-------QKLAQSQFGQPWSTLAAVDQRQLRSRIYR--EVIKDL 111 Query: 132 KVQTIHAFCEAIMQQFPLEAN--ITS-------HFAIADEEQSKKLIEEAKKSTLASIML 182 + T HA +++ + + F+I DE ++ L++E + L Sbjct: 112 WIGTFHALFARLLR---FDIDKFRDPEGLTWTRQFSIYDEGDTQSLVKEIVTQ---ELGL 165 Query: 183 DNNEELKKAFYEILEISNDEDI--ETLISDIISNRTAL 218 D K + + ++ E L +D R L Sbjct: 166 DPKRFEPKKVRWAISNAKNQGWMPEQLEADAGGQRGKL 203 >gi|149914444|ref|ZP_01902975.1| Putative uvrD/DNA Helicase II [Roseobacter sp. AzwK-3b] gi|149811963|gb|EDM71796.1| Putative uvrD/DNA Helicase II [Roseobacter sp. AzwK-3b] Length = 786 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 67/191 (35%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 + EQ A + A AG+GKT L +R++ LL A PS +L +T T Sbjct: 27 YLDDLNPEQRAAVQALEGPVLMLAGAGTGKTKALTKRIVHLLNTGSARPSEILAVTFTNK 86 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++ G + Sbjct: 87 AAREMKSRVGRMLGEAVE-------------------------------------GMPWL 109 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ C I+++ + S+F I D + +L+++ + + +D+ + Sbjct: 110 GTFHSICVKILRRHQELVGLKSNFTILDTDDQIRLLKQ----LIQAANIDDKRWPARHLA 165 Query: 194 EILEISNDEDI 204 +++ + Sbjct: 166 GVIDNWKNRAW 176 >gi|138893931|ref|YP_001124384.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2] gi|134265444|gb|ABO65639.1| ATP-dependent DNA helicase [Geobacillus thermodenitrificans NG80-2] Length = 724 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 54/161 (33%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L K +Q + A AGSGKT +L R+ L+ + P +L +T T A Sbjct: 9 LAHLNKEQQEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVVPWNILAITFTNKA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ + + + Sbjct: 69 AREMRERVQALLGGAAE--------------------------------------DVWIS 90 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F+I D +I+ K Sbjct: 91 TFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVIKAILKE 131 >gi|297590041|ref|ZP_06948681.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus MN8] gi|297577169|gb|EFH95883.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus MN8] Length = 739 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ +EQ A + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ + + + + Sbjct: 64 AAREMKERVQKLVGDQAEV--------------------------------------IWM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D K +I++ K+ Sbjct: 86 STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127 >gi|296454009|ref|YP_003661152.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301] gi|296183440|gb|ADH00322.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301] Length = 897 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 40/158 (25%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ +Q A ++ + A AGSGKT +L +R+ +L A PS +L +T T Sbjct: 14 ELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 73 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ +I + + Sbjct: 74 KAAAEMRERLGSLIGPVAQ--------------------------------------RMW 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 V T H+ C I+++ + S F+I D S++L++ Sbjct: 96 VSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERLVK 133 >gi|293378593|ref|ZP_06624754.1| UvrD/REP helicase [Enterococcus faecium PC4.1] gi|292642783|gb|EFF60932.1| UvrD/REP helicase [Enterococcus faecium PC4.1] Length = 425 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 46/193 (23%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 + +D ++ +++ + ++ + A AGSGKT +L RV L+ N P +L +T Sbjct: 4 NNLLDKMNDKQAQAVRCTE--GPLLIMAGAGSGKTRVLTHRVAYLIQEKNVLPWHVLAIT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV +++ E Sbjct: 62 FTNKAAREMRERVDKLLG--------------------------------------EAGS 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-EL 188 + V T HA C I+++ + F IA + + L+ K LA + +D + Sbjct: 84 DIWVSTFHALCVRILRREAEKIGFNRSFTIASPSEQRTLM----KHILADLNVDTKRYDP 139 Query: 189 KKAFYEILEISND 201 + I ND Sbjct: 140 RMVLSNISNAKND 152 >gi|268315971|ref|YP_003289690.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252] gi|262333505|gb|ACY47302.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252] Length = 768 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 40/169 (23%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 + + ++ ++ + + + ++ + A GSGKT L R+ L+ A P +L Sbjct: 22 EAAARILEGLNPVQRQAVQVTE--GPVLIIAGPGSGKTRTLTHRIAYLIATGRARPHQIL 79 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 LT T AA EM R+ ++ A + ARH Sbjct: 80 ALTFTNKAAREMMERIERLVGAEA--------------------------ARH------- 106 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T HA I+++ T F+I D + S++L+ E Sbjct: 107 ----IWMGTFHAIFARILRREGHRIGYTPDFSIYDTDDSERLLRELMAR 151 >gi|149025505|ref|ZP_01836438.1| exonuclease RexA [Streptococcus pneumoniae SP23-BS72] gi|147929377|gb|EDK80374.1| exonuclease RexA [Streptococcus pneumoniae SP23-BS72] Length = 1216 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAANELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L+E + + + + K+ F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + +S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223 >gi|328950824|ref|YP_004368159.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884] gi|328451148|gb|AEB12049.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884] Length = 716 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 58/162 (35%), Gaps = 40/162 (24%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71 +DL+ Q A T A V A AGSGKT +V R+ L+ +P+ +L +T T Sbjct: 1 MDLLRDLNPAQREAVQHYTGPALVVAGAGSGKTRTVVHRIAYLIRHRGVYPTEILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ + L Sbjct: 61 NKAAGEMKERLARMVGPAAR--------------------------------------EL 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 V T H+ I++ + + F + DE+ L++E Sbjct: 83 WVSTFHSAALRILRVYGEYIGLKPGFVVYDEDDQLALLKEVL 124 >gi|295114066|emb|CBL32703.1| ATP-dependent DNA helicase PcrA [Enterococcus sp. 7L76] Length = 752 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 12 NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 71 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + V T H+ Sbjct: 72 KERVNKLLETGGE--------------------------------------DVWVSTFHS 93 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + +F I D + K L++ Sbjct: 94 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 131 >gi|256957408|ref|ZP_05561579.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DS5] gi|257077596|ref|ZP_05571957.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis JH1] gi|294779926|ref|ZP_06745307.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis PC1.1] gi|256947904|gb|EEU64536.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis DS5] gi|256985626|gb|EEU72928.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis JH1] gi|294452975|gb|EFG21396.1| ATP-dependent DNA helicase PcrA [Enterococcus faecalis PC1.1] Length = 752 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 12 NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 71 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + V T H+ Sbjct: 72 KERVNKLLETGGE--------------------------------------DVWVSTFHS 93 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + +F I D + K L++ Sbjct: 94 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 131 >gi|209523272|ref|ZP_03271828.1| UvrD/REP helicase [Arthrospira maxima CS-328] gi|209496423|gb|EDZ96722.1| UvrD/REP helicase [Arthrospira maxima CS-328] Length = 1070 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 39/223 (17%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAA 75 +S T +Q A+ P +S V+A AG+GKT++LV+R L L+ P ++ +T T+ AA Sbjct: 1 MSLTNEQQAAATSP-QSIIVTAGAGTGKTYMLVERYLYYLVEKGLSPLEIVAVTFTEKAA 59 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ R+ + + PN+ D IL + T Sbjct: 60 QELRSRIRSQVRQ------------------QLPNRPD----------ILAELEAAPIST 91 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IHA I ++ P AN+ + F + ++ + K + E ++ L+ + + E + + Sbjct: 92 IHALASRICREHPQAANVAADFQVLEDLEGKIWLYEGLETALSKLPIQVFETIPYSLLSR 151 Query: 196 LEISNDEDIETLISD-IISNRTALKLIFFF-FSYLWRRKIIEK 236 + + TL+ D +++ R+ + I + + R + +E Sbjct: 152 I-------LATLLDDPLMAERSLNQQIDWSELAQQLRDRALED 187 >gi|146337792|ref|YP_001202840.1| putative ATP-dependent DNA helicase [Bradyrhizobium sp. ORS278] gi|146190598|emb|CAL74600.1| Putative ATP-dependent DNA helicase [Bradyrhizobium sp. ORS278] Length = 686 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 60/167 (35%), Gaps = 36/167 (21%) Query: 16 LISQTKSEQLLASD-------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 + EQ A + P + A AGSGKT+ L RV LL+ A P +L + Sbjct: 8 YLDDLNPEQRRAVEHGGTSAAPGPPLLIIAGAGSGKTNTLAHRVAHLLVNGADPRRILLM 67 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T ++ AA+EMS RV I E ++A +T Sbjct: 68 TFSRRAASEMSRRVERIARKVLGGQAEAITAGLT-------------------------- 101 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H +++++ + F I D E S L+ + Sbjct: 102 ---WAGTFHGLGARMLREYAERIGLDPVFTIHDREDSADLMNLVRHE 145 >gi|15924895|ref|NP_372429.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|15927479|ref|NP_375012.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus N315] gi|148268378|ref|YP_001247321.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus JH9] gi|150394440|ref|YP_001317115.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus JH1] gi|156980221|ref|YP_001442480.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus Mu3] gi|253316914|ref|ZP_04840127.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006692|ref|ZP_05145293.2| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257426037|ref|ZP_05602459.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus 55/2053] gi|257428710|ref|ZP_05605105.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus 65-1322] gi|257431320|ref|ZP_05607696.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus 68-397] gi|257434038|ref|ZP_05610389.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus E1410] gi|257436942|ref|ZP_05612984.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M876] gi|257793289|ref|ZP_05642268.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9781] gi|258408883|ref|ZP_05681165.1| ATP-dependent DNA helicase [Staphylococcus aureus A9763] gi|258421013|ref|ZP_05683944.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9719] gi|258422982|ref|ZP_05685881.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9635] gi|258430015|ref|ZP_05688385.1| ATP-dependent DNA helicase [Staphylococcus aureus A9299] gi|258443467|ref|ZP_05691809.1| ATP-dependent DNA helicase [Staphylococcus aureus A8115] gi|258445325|ref|ZP_05693516.1| ATP-dependent DNA helicase [Staphylococcus aureus A6300] gi|258447889|ref|ZP_05696023.1| ATP-dependent DNA helicase [Staphylococcus aureus A6224] gi|258453322|ref|ZP_05701307.1| ATP-dependent DNA helicase [Staphylococcus aureus A5937] gi|269203558|ref|YP_003282827.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ED98] gi|282894572|ref|ZP_06302800.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8117] gi|282904536|ref|ZP_06312421.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus C160] gi|282906309|ref|ZP_06314161.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus Btn1260] gi|282909225|ref|ZP_06317041.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911530|ref|ZP_06319330.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus WBG10049] gi|282914703|ref|ZP_06322488.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M899] gi|282917252|ref|ZP_06325007.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus D139] gi|282919740|ref|ZP_06327472.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus C427] gi|282925144|ref|ZP_06332804.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus C101] gi|282928078|ref|ZP_06335685.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A10102] gi|283771055|ref|ZP_06343946.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp. aureus H19] gi|283958666|ref|ZP_06376112.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus A017934/97] gi|293507780|ref|ZP_06667622.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus 58-424] gi|293510282|ref|ZP_06668988.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M809] gi|293539337|ref|ZP_06672016.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M1015] gi|295407286|ref|ZP_06817085.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8819] gi|296275663|ref|ZP_06858170.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus MR1] gi|297246189|ref|ZP_06930040.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8796] gi|54038823|sp|P64319|PCRA_STAAN RecName: Full=ATP-dependent DNA helicase pcrA gi|54041649|sp|P64318|PCRA_STAAM RecName: Full=ATP-dependent DNA helicase pcrA gi|13701698|dbj|BAB42991.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus N315] gi|14247677|dbj|BAB58067.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus Mu50] gi|147741447|gb|ABQ49745.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus JH9] gi|149946892|gb|ABR52828.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus JH1] gi|156722356|dbj|BAF78773.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus Mu3] gi|257271180|gb|EEV03337.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus 55/2053] gi|257274354|gb|EEV05866.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus 65-1322] gi|257277969|gb|EEV08625.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus 68-397] gi|257280964|gb|EEV11108.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus E1410] gi|257283731|gb|EEV13856.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M876] gi|257787261|gb|EEV25601.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9781] gi|257840330|gb|EEV64792.1| ATP-dependent DNA helicase [Staphylococcus aureus A9763] gi|257842961|gb|EEV67379.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9719] gi|257846769|gb|EEV70784.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9635] gi|257849609|gb|EEV73577.1| ATP-dependent DNA helicase [Staphylococcus aureus A9299] gi|257851352|gb|EEV75292.1| ATP-dependent DNA helicase [Staphylococcus aureus A8115] gi|257855843|gb|EEV78767.1| ATP-dependent DNA helicase [Staphylococcus aureus A6300] gi|257858821|gb|EEV81690.1| ATP-dependent DNA helicase [Staphylococcus aureus A6224] gi|257864530|gb|EEV87273.1| ATP-dependent DNA helicase [Staphylococcus aureus A5937] gi|262075848|gb|ACY11821.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ED98] gi|282313102|gb|EFB43500.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus C101] gi|282316378|gb|EFB46755.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus C427] gi|282318879|gb|EFB49234.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus D139] gi|282321417|gb|EFB51743.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M899] gi|282324539|gb|EFB54851.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus WBG10049] gi|282326793|gb|EFB57090.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330506|gb|EFB60023.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus Btn1260] gi|282590142|gb|EFB95223.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A10102] gi|282595092|gb|EFC00059.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus C160] gi|282763059|gb|EFC03191.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8117] gi|283459649|gb|EFC06740.1| ATP-dependent DNA helicase pcrA [Staphylococcus aureus subsp. aureus H19] gi|283471176|emb|CAQ50387.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ST398] gi|283789706|gb|EFC28528.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus A017934/97] gi|285817586|gb|ADC38073.1| ATP-dependent DNA helicase UvrD/PcrA [Staphylococcus aureus 04-02981] gi|290919872|gb|EFD96941.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M1015] gi|291094843|gb|EFE25111.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus 58-424] gi|291466646|gb|EFF09166.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus M809] gi|294967861|gb|EFG43891.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8819] gi|297176896|gb|EFH36153.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A8796] gi|298695247|gb|ADI98469.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus ED133] gi|302333570|gb|ADL23763.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp. aureus JKD6159] gi|312437628|gb|ADQ76699.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus TCH60] gi|312830278|emb|CBX35120.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129285|gb|EFT85279.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus CGS03] gi|315193435|gb|EFU23832.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus CGS00] gi|329724791|gb|EGG61295.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus 21172] Length = 730 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ +EQ A + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ + + + + Sbjct: 64 AAREMKERVQKLVGDQAEV--------------------------------------IWM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D K +I++ K+ Sbjct: 86 STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127 >gi|282881333|ref|ZP_06290013.1| putative ATP-dependent DNA helicase PcrA [Prevotella timonensis CRIS 5C-B1] gi|281304809|gb|EFA96889.1| putative ATP-dependent DNA helicase PcrA [Prevotella timonensis CRIS 5C-B1] Length = 808 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 39/165 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 E + +++ S+Q + V A AGSGKT +L ++ + P +L LT T Sbjct: 3 ELLGQLNE--SQQAAVTYNDGPQLVIAGAGSGKTRVLTYKIAYQIQQGMKPWNILALTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +++ +T + Sbjct: 61 NKAANEMKERIGQLVGH-------------------------------------QTARYI 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ S F I DE S+ L++ K Sbjct: 84 NMGTFHSIFARILRSEAARVGYRSGFTIYDESDSRSLLKAIIKEM 128 >gi|171059448|ref|YP_001791797.1| UvrD/REP helicase [Leptothrix cholodnii SP-6] gi|170776893|gb|ACB35032.1| UvrD/REP helicase [Leptothrix cholodnii SP-6] Length = 848 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 76/224 (33%), Gaps = 46/224 (20%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L++ EQ A A + A AGSGKT +L R+ LL P L+ +T T Sbjct: 48 LLANLNPEQYAAVTLAAEPALILAGAGSGKTRVLTTRIAWLLQTGQIGPGGLMAVTFTNK 107 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM HR+ ++ G+ + Sbjct: 108 AAKEMVHRLSTMLPY--------------------------------------NVRGMWI 129 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C ++ A + F I D + A K + ++ LD + K Sbjct: 130 GTFHGLCNRFLRAHWKMAGLPQSFQILDSGDTLS----AVKRVIKAMKLDEERFVPKQVS 185 Query: 194 EILEISNDEDIE--TLISDIISNRTALKLIFFFFSYLWRRKIIE 235 + S D+ L +D RT +++ + R +++ Sbjct: 186 WFIASSKDDGKRPKDLPTDDGQARTMVEIYQAYEDQCQREGVVD 229 >gi|163794460|ref|ZP_02188431.1| UvrD/REP helicase [alpha proteobacterium BAL199] gi|159180184|gb|EDP64707.1| UvrD/REP helicase [alpha proteobacterium BAL199] Length = 798 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 70/193 (36%), Gaps = 45/193 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 + ++ + + A D V A AG+GKT +L R+ LL L A P +L +T T Sbjct: 31 YLSGLNPAQRAAVEALD--GPVLVLAGAGTGKTRVLTTRLAHLLALGKARPWNVLAVTFT 88 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 A+ EM RV I+ + + Sbjct: 89 NRASREMKERVARIVGPAAE--------------------------------------QV 110 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T HA I+++ + S+F I D + +L+++ L + +D+ + Sbjct: 111 WLGTFHALAARILRRHAEVVGLRSNFTILDADDQVRLLKQ----VLQAEDIDDKRWPARV 166 Query: 192 FYEILEISNDEDI 204 +++ D + Sbjct: 167 VMGVIQRWKDRGL 179 >gi|323439849|gb|EGA97565.1| ATP-dependent DNA helicase [Staphylococcus aureus O11] gi|323443012|gb|EGB00633.1| ATP-dependent DNA helicase [Staphylococcus aureus O46] Length = 730 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ +EQ A + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ + + + + Sbjct: 64 AAREMKERVQKLVGDQAEV--------------------------------------IWM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D K +I++ K+ Sbjct: 86 STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127 >gi|299749616|ref|XP_002911398.1| ATP-dependent DNA helicase pcra [Coprinopsis cinerea okayama7#130] gi|298408518|gb|EFI27904.1| ATP-dependent DNA helicase pcra [Coprinopsis cinerea okayama7#130] Length = 966 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 DL+ S QL A+ P S + A GSGKT +L R+ L+ + P+++ +T T Sbjct: 4 DLLKGLNSAQLKAATYPPNTSLQILAGPGSGKTRVLTTRIAHLITNCHLPPNSICAVTFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +++ E L Sbjct: 64 NKAANEMKERLTKLLGK-------------------------------------ERTAQL 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 K+ T H+ C ++++ + ++ +F + D +SKK+I K Sbjct: 87 KLGTFHSLCARFLRKYSKQVSVPDNFTVCDAGESKKMITSILKE 130 >gi|253734985|ref|ZP_04869150.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus TCH130] gi|253727167|gb|EES95896.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus TCH130] Length = 730 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ +EQ A + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ + + + + Sbjct: 64 AAREMKERVQKLVGDQAEV--------------------------------------IWM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D K +I++ K+ Sbjct: 86 STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127 >gi|21283575|ref|NP_646663.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus MW2] gi|49486724|ref|YP_043945.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus MSSA476] gi|57650656|ref|YP_186790.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus COL] gi|87160459|ref|YP_494538.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195804|ref|YP_500614.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222055|ref|YP_001332877.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus str. Newman] gi|161510128|ref|YP_001575787.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253729683|ref|ZP_04863848.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|258451029|ref|ZP_05699065.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A5948] gi|282923244|ref|ZP_06330925.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9765] gi|284024952|ref|ZP_06379350.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp. aureus 132] gi|294849454|ref|ZP_06790196.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9754] gi|297208935|ref|ZP_06925339.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300913008|ref|ZP_07130446.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus TCH70] gi|304379093|ref|ZP_07361840.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|38604904|sp|Q8NVT1|PCRA_STAAW RecName: Full=ATP-dependent DNA helicase pcrA gi|68605626|sp|Q6G828|PCRA_STAAS RecName: Full=ATP-dependent DNA helicase pcrA gi|81694154|sp|Q5HEL7|PCRA_STAAC RecName: Full=ATP-dependent DNA helicase pcrA gi|110282982|sp|Q53727|PCRA_STAA8 RecName: Full=ATP-dependent DNA helicase pcrA gi|21205016|dbj|BAB95711.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus MW2] gi|49245167|emb|CAG43633.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus MSSA476] gi|57284842|gb|AAW36936.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus COL] gi|87126433|gb|ABD20947.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203362|gb|ABD31172.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374855|dbj|BAF68115.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus str. Newman] gi|160368937|gb|ABX29908.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253726569|gb|EES95298.1| ATP-depentend DNA helicase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257861271|gb|EEV84083.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A5948] gi|269941377|emb|CBI49774.1| ATP-dependent DNA helicase [Staphylococcus aureus subsp. aureus TW20] gi|282593155|gb|EFB98154.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9765] gi|294823591|gb|EFG40018.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus A9754] gi|296886425|gb|EFH25354.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885786|gb|EFK80993.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus TCH70] gi|304342328|gb|EFM08220.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196225|gb|EFU26580.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus CGS01] gi|320139714|gb|EFW31583.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus MRSA131] gi|320142369|gb|EFW34183.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus MRSA177] gi|329314582|gb|AEB88995.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp. aureus T0131] gi|329728640|gb|EGG65070.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus 21189] gi|329731448|gb|EGG67811.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus 21193] Length = 730 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ +EQ A + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ + + + + Sbjct: 64 AAREMKERVQKLVGDQAEV--------------------------------------IWM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D K +I++ K+ Sbjct: 86 STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127 >gi|227536350|ref|ZP_03966399.1| UvrD/REP helicase domain protein [Sphingobacterium spiritivorum ATCC 33300] gi|227243726|gb|EEI93741.1| UvrD/REP helicase domain protein [Sphingobacterium spiritivorum ATCC 33300] Length = 1075 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 17/194 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L L LL + +L +T T A EM R+L+++ ++ Sbjct: 9 ILKASAGSGKTFSLAVHYLTLLFHHEYKYREILAVTFTNKATEEMKTRILDVLKGLANND 68 Query: 94 D----EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + + K + N +A+ + IL V TI F + +++ F Sbjct: 69 PSPGTDNYRQLLLKAYPQYSNIELQDRAQKIYRRILHDYSHFSVSTIDGFVQKVIRGFAF 128 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED------ 203 E + + +++ E K+ ++ + LD+ EL + ++ + D D Sbjct: 129 ELGLDAAYSL--EMNLDKVQDQLVNRL--DLELDDKPELVEWIVDLAKERIDNDKSWNYK 184 Query: 204 --IETLISDIISNR 215 + +L +I R Sbjct: 185 GELLSLTREIFKER 198 >gi|229083589|ref|ZP_04215918.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-44] gi|228699721|gb|EEL52377.1| ATP-dependent DNA helicase pcrA [Bacillus cereus Rock3-44] Length = 745 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 + ++ ++ +Q + A AGSGKT +L R+ LL P +L +T Sbjct: 10 KLLNGLN--PEQQKAVQTTNGPLLLMAGAGSGKTRVLTHRIAYLLGEKGVAPWNVLAITF 67 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + Sbjct: 68 TNKAAREMRERIDTLVGPEAE--------------------------------------D 89 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ I +F I D ++++ K Sbjct: 90 IWISTFHSMCVRILRRDIDRIGINRNFTILDASDQLTVVKKIMKE 134 >gi|330837148|ref|YP_004411789.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374] gi|329749051|gb|AEC02407.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374] Length = 808 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 40/181 (22%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E + +++ + E +L + + V A AGSGKT ++ ++ + A P +L +T Sbjct: 15 ELLAGLNEPQREAVL--ENSAPLLVLAGAGSGKTRVITTKIAWCIRALGIAPWKILAVTF 72 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RVL ++ P Sbjct: 73 TNKAAGEMRDRVLAMVPDA-------------------------------------NPQD 95 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 ++T H+F +++ + S F I D+E S L+ A + +++ Sbjct: 96 FMIRTFHSFGAWFLRRHGELLGLNSGFTIYDDEDSLSLLASAYPEFKKKELSPYMKKIAA 155 Query: 191 A 191 A Sbjct: 156 A 156 >gi|313204216|ref|YP_004042873.1| uvrd/rep helicase [Paludibacter propionicigenes WB4] gi|312443532|gb|ADQ79888.1| UvrD/REP helicase [Paludibacter propionicigenes WB4] Length = 1086 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 12/210 (5%) Query: 38 ANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 A+AGSGKT+ L Q + LL +L +T T A EM R+L+ + A S Sbjct: 7 ASAGSGKTYRLTQDYIHLLFDARRERTHRRILAVTFTNKATDEMKTRILKELLALSQGEK 66 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 A + + ++ +KA+ +L IL + TI F + +++ F + + Sbjct: 67 SDYRAGLIS-KDYPTDEGVNAKAKKILTGILHDYSSFSISTIDRFFQQVIRSFARDIGVH 125 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF----YEILEISNDEDIETLISD 210 + + E + +E++ + + D N++L + E +E S ++ I + Sbjct: 126 GGYNL--ELDNTATLEQSVDNLFLDLSKDENKQLLQWLTAYAEERIEQSESWNMRNNIME 183 Query: 211 IISNRTALKLIFFFFSYLWRRKIIEKSLWS 240 + R K + + RK+ E+ + Sbjct: 184 L--GREIFKESYQHKAEDTNRKLHEREFLT 211 >gi|294785780|ref|ZP_06751068.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_27] gi|294487494|gb|EFG34856.1| ATP-dependent DNA helicase PcrA [Fusobacterium sp. 3_1_27] Length = 737 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 41/166 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 + ++ ++ + E AS S + A AGSGKT + R+ ++ P ++L + Sbjct: 2 NLNLLEKLNDKQRE--AASQIDGSILILAGAGSGKTRTITYRIAHMIENVGISPYSILAV 59 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV E++ + Sbjct: 60 TFTNKAAKEMRERVEELVGDIAKAC----------------------------------- 84 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + T H+F +++ + E S+F I D + K++++ K Sbjct: 85 ---TISTFHSFGMRLLRMYAKEVEYNSNFTIYDTDDQKRIVKAILK 127 >gi|256369829|ref|YP_003107340.1| DNA helicase II [Brucella microti CCM 4915] gi|255999992|gb|ACU48391.1| DNA helicase II [Brucella microti CCM 4915] Length = 858 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 42/198 (21%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q+H E L ++ V A AG+GKT +L R+ +L A+PS +L Sbjct: 37 QQHGEPDYLKGLNPEQKQAVLTTEGPVLVLAGAGTGKTRVLTTRIAHILSTGLAYPSQIL 96 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T AA EM R+ ++ Sbjct: 97 AVTFINKAAREMKERIGHLVGGAVE----------------------------------- 121 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ ++++ N+TS F I D + +LI++ + + LD+ Sbjct: 122 --GMPWLGTFHSIGVKLLRRHAELVNLTSSFTILDTDDVIRLIKQ----LIQAEGLDDKR 175 Query: 187 ELKKAFYEILEISNDEDI 204 + F +++ ++ Sbjct: 176 WPARTFANMIDGWKNKGF 193 >gi|224541822|ref|ZP_03682361.1| hypothetical protein CATMIT_00994 [Catenibacterium mitsuokai DSM 15897] gi|224525245|gb|EEF94350.1| hypothetical protein CATMIT_00994 [Catenibacterium mitsuokai DSM 15897] Length = 1181 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 80/224 (35%), Gaps = 37/224 (16%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71 + + K +Q ++ VSA AGSGKT ILV R++ L++ + L LT T Sbjct: 1 MMRMPKYNKEQQAAIDLRGKTILVSAPAGSGKTRILVARLISLIVNDHYSMDQFLVLTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 KAA EM R L+ + + ++ + + + + Sbjct: 61 KAAGNEMKQR---------------LNVSLHEEALADHDEETLRHIQEQIQLLPHAY--- 102 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN------ 185 + T +FC+ +++++ + F + + ++ L + D + Sbjct: 103 -ITTFDSFCKTLLEKYGYLIGVMPGFKVNPSPD--LIKDQVLDQCLEKWVEDPDFKDYAY 159 Query: 186 --------EELKKAFYEILEISNDE-DIETLISDIISNRTALKL 220 ++LKK + I+N D + + L Sbjct: 160 RHNTKNNFDDLKKTLIDFQNITNSFVDFHRFLDQVHERYYDFNL 203 >gi|157738272|ref|YP_001490956.1| putative recombination protein RecB [Arcobacter butzleri RM4018] gi|157700126|gb|ABV68286.1| ATP-dependent DNA helicase, UvrD/REP family [Arcobacter butzleri RM4018] Length = 910 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 29/192 (15%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + LLL A P+ +L LT T AA EMS R+ + + Sbjct: 5 LALKASAGSGKTFALTVRYICLLLLGAKPNEILTLTFTNKAANEMSERIYKTLLTLGDDE 64 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + + E +K ++ +++LI L + TI F I+++F I Sbjct: 65 AYLNAIE----NEVNLSKEEILGKKNILIKQFSNAN-LSIFTIDKFVNKILREFCGYIGI 119 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 + F I N++++K YE L+ N++D +TLI Sbjct: 120 SDDFEI------------------------KNDDIEKLSYEFLKSLNEKDFQTLIDLSFY 155 Query: 214 NRTALKLIFFFF 225 + IF F Sbjct: 156 EKKKFNSIFELF 167 >gi|86151975|ref|ZP_01070188.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni 260.94] gi|85841083|gb|EAQ58332.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni 260.94] Length = 921 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 7/178 (3%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + L+L A + +L LT TK AA EM R++E + Sbjct: 8 LALEASAGSGKTFALSVRFVALILKGARINEILALTFTKKAANEMQKRIIETFLNLEKEN 67 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 E+ K+ GK + + L T LK+ T AF I++ F L + Sbjct: 68 KTSECNELCKLLGKDKEELISLRDAKK-EEFLRT--ELKISTFDAFFGKILRVFALNLGL 124 Query: 154 TSHFAIADE----EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL 207 +S FA+++E + + + + + ++ +E + F E+ + + + L Sbjct: 125 SSDFAMSEEKLDVREIFLKLLKKDELKDLAYYINLVDEKENFFNELEKFYENAYFQNL 182 >gi|71082723|ref|YP_265442.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1062] gi|71061836|gb|AAZ20839.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1062] Length = 678 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 78/197 (39%), Gaps = 44/197 (22%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCL 68 +SE ++ ++ + E +L D + A AGSGKT +L R+ ++ P+ +L + Sbjct: 3 NSEYLNNLNNAQKEAVLYLD--GPLLIVAGAGSGKTKVLTSRIAHIINEKKAFPNQILSV 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM +RV I+ + E Sbjct: 61 TFTNKAAKEMQNRVSSILNS-------------------------------------EAI 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 G + T H+ C ++++ A +TS+F I D + +LI+ K + +D + Sbjct: 84 GLSWLGTFHSICAKLLRKHAPAAGLTSNFTIIDTDDQVRLIKNICK----AENIDIKQLA 139 Query: 189 KKAFYEILEISNDEDIE 205 K I++ ++ Sbjct: 140 PKFILSIIDRWKNKGFH 156 >gi|3024353|sp|P56255|PCRA_BACST RecName: Full=ATP-dependent DNA helicase pcrA gi|4930230|pdb|3PJR|A Chain A, Helicase Substrate Complex gi|15988533|pdb|1QHG|A Chain A, Structure Of Dna Helicase Mutant With Adpnp gi|157833507|pdb|1PJR|A Chain A, Structure Of Dna Helicase Length = 724 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L K +Q + A AGSGKT +L R+ L+ + P +L +T T A Sbjct: 9 LAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ + + + Sbjct: 69 AREMRERVQSLLGGAAE--------------------------------------DVWIS 90 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F+I D +++ K Sbjct: 91 TFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKE 131 >gi|297528689|ref|YP_003669964.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. C56-T3] gi|297251941|gb|ADI25387.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. C56-T3] Length = 724 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 63/188 (33%), Gaps = 44/188 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L K +Q + A AGSGKT +L R+ L+ P +L +T T A Sbjct: 9 LAHLNKEQQEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ + + + Sbjct: 69 AREMKERVQALLGGAAE--------------------------------------DVWIS 90 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFY 193 T H+ C ++++ I +F+I D +I K+ L +D + EL+ Sbjct: 91 TFHSMCVRMLRRDIDRIGINRNFSILDPTDQLSVI----KAILKDKNIDPKKFELRTILA 146 Query: 194 EILEISND 201 I ND Sbjct: 147 TISGAKND 154 >gi|315636561|ref|ZP_07891797.1| UvrD/REP helicase [Arcobacter butzleri JV22] gi|315479210|gb|EFU69907.1| UvrD/REP helicase [Arcobacter butzleri JV22] Length = 911 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 29/192 (15%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + LLL A P+ +L LT T AA EMS R+ + + Sbjct: 5 LALKASAGSGKTFALTVRYICLLLLGAKPNEILTLTFTNKAANEMSERIYKTLLTLGDDE 64 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + + E +K ++ +++LI L + TI F I+++F I Sbjct: 65 AYLNAIE----NEVNLSKEEILGKKNILIKQFSNAN-LSIFTIDKFVNKILREFCGYIGI 119 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 + F I N++++K YE L+ N++D +TLI Sbjct: 120 SDDFEI------------------------KNDDIEKLSYEFLKSLNEKDFQTLIDLSFY 155 Query: 214 NRTALKLIFFFF 225 + IF F Sbjct: 156 EKKKFNSIFELF 167 >gi|225856772|ref|YP_002738283.1| recombination helicase AddA [Streptococcus pneumoniae P1031] gi|225725942|gb|ACO21794.1| recombination helicase AddA [Streptococcus pneumoniae P1031] Length = 1216 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 84/222 (37%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L+E + + + + K++F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKESFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + +S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223 >gi|225854627|ref|YP_002736139.1| recombination helicase AddA [Streptococcus pneumoniae JJA] gi|225723772|gb|ACO19625.1| recombination helicase AddA [Streptococcus pneumoniae JJA] Length = 1216 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 84/222 (37%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L+E + + + + K++F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKESFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + +S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223 >gi|91762855|ref|ZP_01264820.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1002] gi|91718657|gb|EAS85307.1| DNA helicase II [Candidatus Pelagibacter ubique HTCC1002] Length = 678 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 78/196 (39%), Gaps = 44/196 (22%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCL 68 +SE ++ ++ + E +L D + A AGSGKT +L R+ ++ P+ +L + Sbjct: 3 NSEYLNNLNNAQKEAVLYLD--GPLLIVAGAGSGKTKVLTSRIAHIINEKKAFPNQILSV 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM +RV I+ + E Sbjct: 61 TFTNKAAKEMQNRVSSILNS-------------------------------------EAI 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 G + T H+ C ++++ A +TS+F I D + +LI+ K + +D + Sbjct: 84 GLSWLGTFHSICAKLLRKHAPAAGLTSNFTIIDTDDQVRLIKNICK----AENIDIKQLA 139 Query: 189 KKAFYEILEISNDEDI 204 K I++ ++ Sbjct: 140 PKFILSIIDRWKNKGF 155 >gi|270294147|ref|ZP_06200349.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275614|gb|EFA21474.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 784 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 39/167 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 + I+ +++ + +L +D + V A AGSGKT +L ++ LL P +L LT Sbjct: 1 MPDYIEELNEGQRNAVLYND--GPSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ + +ARHL Sbjct: 59 FTNKAAREMKERIARQMGP--------------------------ERARHL--------- 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I+ TS F I D SK LI K Sbjct: 84 --WMGTFHSMFLRILHVEAGHIGFTSQFTIYDTADSKSLIRSIIKEM 128 >gi|296121632|ref|YP_003629410.1| exodeoxyribonuclease V [Planctomyces limnophilus DSM 3776] gi|296013972|gb|ADG67211.1| Exodeoxyribonuclease V [Planctomyces limnophilus DSM 3776] Length = 1226 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 97/232 (41%), Gaps = 40/232 (17%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKAAAA 76 T + ++ + S +SA AG GKT +L +R L L ++L+ +T T AA Sbjct: 7 TPQQTRALTEKSVSIALSAGAGCGKTFVLTRRFLGYLKPGPEQYPLTSLVAITFTDKAAR 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV + +++ P ++D +++L ++ TI Sbjct: 67 EMRDRVRATC--------------LQRVRECPPEEADH------WLSLLRDLDRARISTI 106 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC I++ + + + F + + L+ ++ +++ +++++ + Sbjct: 107 HSFCGNILRSHAIASGLDPEFTTLEASVADSLLRQSIEASATRLLVNDQPAFRL------ 160 Query: 197 EISNDEDIETLISD---IISNRTALKLIFFF------FSYLWRRKIIEKSLW 239 ++ D IE L+ ++ R + L F + +W R ++++ W Sbjct: 161 -LAVDYGIEKLLESSGILVRQRQLISLADFAEMTAEELAGIWHR-WLKETGW 210 >gi|322690920|ref|YP_004220490.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp. longum JCM 1217] gi|320455776|dbj|BAJ66398.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp. longum JCM 1217] Length = 900 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 40/158 (25%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ +Q A ++ + A AGSGKT +L +R+ +L A PS +L +T T Sbjct: 14 ELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 73 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ +I + + Sbjct: 74 KAAAEMRERLGSLIGPVAQ--------------------------------------RMW 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 V T H+ C I+++ + S F+I D S++L++ Sbjct: 96 VSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERLVK 133 >gi|300950421|ref|ZP_07164344.1| DNA helicase II [Escherichia coli MS 116-1] gi|300450267|gb|EFK13887.1| DNA helicase II [Escherichia coli MS 116-1] Length = 689 Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 43/166 (25%) Query: 41 GSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSA 99 GSGKT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 1 GSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT----------- 49 Query: 100 EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAI 159 + GG+ V T H +++ ++AN+ F I Sbjct: 50 ---------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQI 82 Query: 160 ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 D E +L+ K + ++ LD + + + DE + Sbjct: 83 LDSEDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLR 124 >gi|319647077|ref|ZP_08001303.1| PcrA protein [Bacillus sp. BT1B_CT2] gi|317390901|gb|EFV71702.1| PcrA protein [Bacillus sp. BT1B_CT2] Length = 725 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 51/154 (33%), Gaps = 39/154 (25%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 +Q + A AGSGKT +L R+ L+ P +L +T T AA EM R Sbjct: 2 QQEAVKTTDGPLLIMAGAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFTNKAAREMKER 61 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V I+ + + + T H+ C Sbjct: 62 VESILGPGA--------------------------------------DDIWISTFHSMCV 83 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 I+++ I +F+I D +I+ K Sbjct: 84 RILRRDIDRIGINRNFSILDTSDQLSVIKGILKE 117 >gi|57867385|ref|YP_189012.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis RP62A] gi|81673999|sp|Q5HN29|PCRA_STAEQ RecName: Full=ATP-dependent DNA helicase pcrA gi|57638043|gb|AAW54831.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis RP62A] gi|329734814|gb|EGG71119.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU028] Length = 729 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 55/159 (34%), Gaps = 39/159 (24%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76 + + + A AGSGKT +L R+ LL + P +L +T T AA Sbjct: 7 NMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV ++ + + + + T Sbjct: 67 EMKARVEHLVGEEAQV--------------------------------------IWMSTF 88 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 H+ C I+++ I +F I D K +I++ KS Sbjct: 89 HSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKS 127 >gi|293189079|ref|ZP_06607806.1| ATP-dependent DNA helicase [Actinomyces odontolyticus F0309] gi|292821993|gb|EFF80925.1| ATP-dependent DNA helicase [Actinomyces odontolyticus F0309] Length = 944 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 ++ + + A AGSGKT +L R+ LL A +L +T T AAAEM Sbjct: 90 NDRQREAVTHAGSPLLILAGAGSGKTRVLTHRIAYLLATGRARAGEILAITFTNKAAAEM 149 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R ++ + + V T H+ Sbjct: 150 RERAGALVGDDAR--------------------------------------RMWVSTFHS 171 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C +++ A ++S F I D + S++LI+ K+ Sbjct: 172 ACVRLLRYKHEAAGLSSSFTIYDAQDSQRLIQMVLKAM 209 >gi|257420982|ref|ZP_05597972.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis X98] gi|257162806|gb|EEU92766.1| ATP-dependent DNA helicase pcrA [Enterococcus faecalis X98] Length = 752 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT +L R+ L+ +P +L +T T AA EM Sbjct: 12 NPRQEEAVLHTEGPLLVMAGAGSGKTRVLTHRIAYLIEEKEVNPWNILAITFTNKAAKEM 71 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + V T H+ Sbjct: 72 KERVNKLLETGGE--------------------------------------DVWVSTFHS 93 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + +F I D + K L++ Sbjct: 94 MCVRILRRDVDQIGYNRNFTIIDPSEQKTLMKRILNDL 131 >gi|254442638|ref|ZP_05056114.1| UvrD/REP helicase subfamily [Verrucomicrobiae bacterium DG1235] gi|198256946|gb|EDY81254.1| UvrD/REP helicase subfamily [Verrucomicrobiae bacterium DG1235] Length = 665 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 44/202 (21%), Positives = 74/202 (36%), Gaps = 41/202 (20%) Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID ++ +Q A + + A AGSGKT L RV LL P +L LT T Sbjct: 17 IDFRAELNDDQFAAVTAKPGPLLILAGAGSGKTRTLTYRVAYLLSQGVRPGEILLLTFTN 76 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV E+T ++G+ Sbjct: 77 KAAKEMLSRV----------------EELTTVEGR----------------------RFW 98 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 T H+ +++ ++ +F I D +++ +++ A +S ++ D Sbjct: 99 GGTFHSIGHRLLRMHGEAIDLPKNFTILDAGEAETVLKHAVESVNSAFFKDKTHPKPGPL 158 Query: 193 YEILEISND--EDIETLISDII 212 I+ ++ + E IE I D Sbjct: 159 SSIISMARNTRESIERTILDFF 180 >gi|162448347|ref|YP_001610714.1| ATP-dependent deoxyribonuclease subunit A [Sorangium cellulosum 'So ce 56'] gi|161158929|emb|CAN90234.1| ATP-dependent deoxyribonuclease subunit A [Sorangium cellulosum 'So ce 56'] Length = 1254 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 23/175 (13%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-----NAHPSTLLCLTHT 71 ++ + + + D + V A AG+GKT LV R++ +L ++ +T T Sbjct: 14 LADEPARRRIRDDLRTTLVVEAAAGTGKTTALVSRIVAVLRRAPEEGGGTLDRIVAVTFT 73 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + AA EM R+ I P +AR L L Sbjct: 74 EKAAGEMKLRLRAEIERARS----------------DPGAGPAERAR--LDEALAHLEAA 115 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 ++ TIH+FC +++++P+EA + F +A +Q++ L ++A + + D E Sbjct: 116 RIGTIHSFCADLLREWPVEARVDPLFQVAAADQAEALFDQAFDAWFQRTLNDPPE 170 >gi|86608842|ref|YP_477604.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557384|gb|ABD02341.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 787 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 70/179 (39%), Gaps = 26/179 (14%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 H+ +D ++ ++ + + V A AGSGKT L R+ L+ P +L + Sbjct: 3 HASLLDALNPSQRQAVQ--HFCGPLLVVAGAGSGKTRALTHRIAYLVRHYRVDPGEILAV 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET- 127 T T AA EM R+ ++ E + G + + ++A L + Sbjct: 61 TFTNKAAREMKERIEQLFAE----------QEAQEQFGIPLEELEPAQATRLKSAVYHRW 110 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEAN--ITS-------HFAIADEEQSKKLIEEAKKSTL 177 L + T H+ I++ LE HF+I DE ++ L++E L Sbjct: 111 IKPLWIGTFHSLFAQILR---LEIEKYQDPKGRKWTRHFSIFDESDAQSLVKEIVTKQL 166 >gi|27468508|ref|NP_765145.1| ATP-depentend DNA helicase [Staphylococcus epidermidis ATCC 12228] gi|293367781|ref|ZP_06614430.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis M23864:W2(grey)] gi|38604841|sp|Q8CRT9|PCRA_STAES RecName: Full=ATP-dependent DNA helicase pcrA gi|27316055|gb|AAO05189.1|AE016749_135 ATP-depentend DNA helicase [Staphylococcus epidermidis ATCC 12228] gi|291318120|gb|EFE58517.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis M23864:W2(grey)] gi|329726871|gb|EGG63329.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU144] gi|329734740|gb|EGG71046.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis VCU045] Length = 729 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 55/159 (34%), Gaps = 39/159 (24%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76 + + + A AGSGKT +L R+ LL + P +L +T T AA Sbjct: 7 NMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV ++ + + + + T Sbjct: 67 EMKARVEHLVGEEAQV--------------------------------------IWMSTF 88 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 H+ C I+++ I +F I D K +I++ KS Sbjct: 89 HSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKS 127 >gi|300771529|ref|ZP_07081404.1| UvrD/REP helicase domain protein [Sphingobacterium spiritivorum ATCC 33861] gi|300761518|gb|EFK58339.1| UvrD/REP helicase domain protein [Sphingobacterium spiritivorum ATCC 33861] Length = 1075 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 79/194 (40%), Gaps = 17/194 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L L LL + +L +T T A EM R+L+++ ++ Sbjct: 9 ILKASAGSGKTFSLAVHYLTLLFHHEYKYREILAVTFTNKATEEMKTRILDVLKGLANND 68 Query: 94 D----EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + + K + + +A+ + IL V TI F + +++ F Sbjct: 69 PSPGTDNYRQLLLKAYPQYSHIELQERAQKIYRRILHDYSHFSVSTIDGFVQKVIRGFAF 128 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED------ 203 E + + +++ E K+ ++ + LD+ EL + ++ + D D Sbjct: 129 ELGLDAAYSL--EMNLDKVQDQLVDRL--DVELDDKPELVEWIVDLAKERIDNDKSWNYK 184 Query: 204 --IETLISDIISNR 215 + +L +I R Sbjct: 185 GELLSLTREIFKER 198 >gi|149204193|ref|ZP_01881161.1| UvrD/REP helicase [Roseovarius sp. TM1035] gi|149142635|gb|EDM30680.1| UvrD/REP helicase [Roseovarius sp. TM1035] Length = 779 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 39/162 (24%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 + EQ A++ + A AG+GKT L R++ L+ A P +L +T T Sbjct: 27 YLDDLNPEQRRAAETLDGPVLMLAGAGTGKTKALTTRIVHLMNTGRAGPGDILAVTFTNK 86 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++ + G + Sbjct: 87 AAREMKERVGRLLGQPAE-------------------------------------GMPWL 109 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C ++++ ++ S+F I D + +L+++ ++ Sbjct: 110 GTFHSICVKLLRRHAELVDLKSNFTILDTDDQLRLLKQLVQA 151 >gi|317482225|ref|ZP_07941247.1| ATP-dependent DNA helicase PcrA [Bifidobacterium sp. 12_1_47BFAA] gi|316916363|gb|EFV37763.1| ATP-dependent DNA helicase PcrA [Bifidobacterium sp. 12_1_47BFAA] Length = 884 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 40/158 (25%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ +Q A ++ + A AGSGKT +L +R+ +L A PS +L +T T Sbjct: 14 ELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 73 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ +I + + Sbjct: 74 KAAAEMRERLGSLIGPVAQ--------------------------------------RMW 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 V T H+ C I+++ + S F+I D S++L++ Sbjct: 96 VSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERLVK 133 >gi|314963433|gb|EFT07533.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL082PA1] Length = 810 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 40/163 (24%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL+ Q A V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 40 DLLVDLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV++++ + + Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V T H+ I++ I+ +F+I D+ +K+LI + Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164 >gi|189439490|ref|YP_001954571.1| superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A] gi|312132895|ref|YP_004000234.1| uvrd2 [Bifidobacterium longum subsp. longum BBMN68] gi|322688951|ref|YP_004208685.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp. infantis 157F] gi|189427925|gb|ACD98073.1| Superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A] gi|311773868|gb|ADQ03356.1| UvrD2 [Bifidobacterium longum subsp. longum BBMN68] gi|320460287|dbj|BAJ70907.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp. infantis 157F] Length = 900 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 40/158 (25%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ +Q A ++ + A AGSGKT +L +R+ +L A PS +L +T T Sbjct: 14 ELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 73 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ +I + + Sbjct: 74 KAAAEMRERLGSLIGPVAQ--------------------------------------RMW 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 V T H+ C I+++ + S F+I D S++L++ Sbjct: 96 VSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERLVK 133 >gi|270308367|ref|YP_003330425.1| UvrD/REP helicase [Dehalococcoides sp. VS] gi|270154259|gb|ACZ62097.1| UvrD/REP helicase [Dehalococcoides sp. VS] Length = 738 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 41/166 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 + + ++ + + + + + A GSGKT ++ R+ L+ + +P ++ +T Sbjct: 3 DILTGLNPAQKQAVEVVE--GPVLILAGPGSGKTRVITHRIAYLIKIVGINPHRIMAVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R L + G Sbjct: 61 TNKAAREMETR--------------------------------------LNLLAPSAAGR 82 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L + T HA C I++Q L + + F I D++ + LI++A Sbjct: 83 LTMGTFHAICARILRQDGLPLGVPADFVIYDDDDQQSLIKQAMAEL 128 >gi|23465464|ref|NP_696067.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum NCC2705] gi|239622010|ref|ZP_04665041.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|23326117|gb|AAN24703.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum NCC2705] gi|239515201|gb|EEQ55068.1| ATP-dependent DNA helicase PcrA [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 881 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 40/158 (25%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ +Q A ++ + A AGSGKT +L +R+ +L A PS +L +T T Sbjct: 14 ELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 73 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ +I + + Sbjct: 74 KAAAEMRERLGSLIGPVAQ--------------------------------------RMW 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 V T H+ C I+++ + S F+I D S++L++ Sbjct: 96 VSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERLVK 133 >gi|73748886|ref|YP_308125.1| ATP-dependent DNA helicase PcrA [Dehalococcoides sp. CBDB1] gi|73660602|emb|CAI83209.1| ATP-dependent DNA helicase PcrA [Dehalococcoides sp. CBDB1] Length = 738 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 63/166 (37%), Gaps = 41/166 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 + + ++ + + + A + + A GSGKT ++ R+ L+ + P ++ +T Sbjct: 3 DILTGLNPAQKKAVEAVE--GPVLILAGPGSGKTRVITHRIAYLIKVVGITPHRIMAVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + G Sbjct: 61 TNKAAREMETRLNQLAPSAV--------------------------------------GR 82 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L + T HA C I++Q L + S F I D++ + LI++A Sbjct: 83 LTMGTFHAICARILRQDGLPLGVPSDFVIYDDDDQQSLIKQAMAEL 128 >gi|183221021|ref|YP_001839017.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911115|ref|YP_001962670.1| ATP-dependent DNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775791|gb|ABZ94092.1| ATP-dependent DNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779443|gb|ABZ97741.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 727 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 76/208 (36%), Gaps = 46/208 (22%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 ++L+ ++L + A AGSGKT ++ R+ L+L N +P+ +L +T T Sbjct: 1 MELVGLNSEQKLAVESVDGPLLILAGAGSGKTRVITYRIANLILNHNVYPNQILAVTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R ++ S+ Sbjct: 61 KAAEEMRSRCRNLLPDGSYEP--------------------------------------F 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI-------MLDNN 185 V+T H+ C ++++ + S+F + D + + LI+E KS + + Sbjct: 83 VRTFHSLCLYLLRREGKVLGLGSNFTVYDSDMQESLIKEILKSKEMDTKEFRPSSLANQF 142 Query: 186 EELKKAFYEILEISNDEDIETLISDIIS 213 + K +F E + + + I S Sbjct: 143 SQAKDSFLTAEEFAKKKADDAYTKTIAS 170 >gi|167645425|ref|YP_001683088.1| UvrD/REP helicase [Caulobacter sp. K31] gi|167347855|gb|ABZ70590.1| UvrD/REP helicase [Caulobacter sp. K31] Length = 804 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 43/192 (22%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 + + EQ A + V A AG+GKT +L R+ +L A P LL +T T Sbjct: 42 NYLEGLNPEQRAAVEATEGPVLVLAGAGTGKTRVLTTRLAHILATGRARPWELLVVTFTN 101 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ II E G Sbjct: 102 KAAREMRERITHIIGD-------------------------------------EAEGLRW 124 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ I+++ + S + I D + ++L+++ + + +D+ + Sbjct: 125 LGTFHSVAAQILRRHAELVGLKSSYTIIDTDDQERLMKQ----LIEADNIDSKRWTPRIL 180 Query: 193 YEILEISNDEDI 204 +++ + Sbjct: 181 AGLIDTWKNRGW 192 >gi|331266377|ref|YP_004326007.1| exonuclease RexA, RecB, ATP-dependent exoDNAse,beta subunit (contains helicase and exonuclease domains) [Streptococcus oralis Uo5] gi|326683049|emb|CBZ00666.1| exonuclease RexA, RecB, ATP-dependent exoDNAse,beta subunit (contains helicase and exonuclease domains) [Streptococcus oralis Uo5] Length = 1217 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 80/222 (36%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + KI + +D+ +HL + + P + T+ +F Sbjct: 89 ERLEK------------------KISQQIQESNDVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-E 197 + + + +I +F I +E + L E + N+E F ++ Sbjct: 130 TQKFLGKHGYLIDIAPNFRILQNESEQLLLKNEVFHQVFEAHYQGENKE---NFSRLVKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSSPQKWLSNSFL 223 >gi|221231865|ref|YP_002511017.1| putative ATP-dependent exonuclease subunit A [Streptococcus pneumoniae ATCC 700669] gi|251764564|sp|B8ZQ32|ADDA_STRPJ RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|220674325|emb|CAR68871.1| putative ATP-dependent exonuclease subunit A [Streptococcus pneumoniae ATCC 700669] Length = 1216 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILNQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L+E + + + + K+ F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + +S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223 >gi|172056503|ref|YP_001812963.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sibiricum 255-15] gi|171989024|gb|ACB59946.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sibiricum 255-15] Length = 741 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 63/189 (33%), Gaps = 44/189 (23%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKA 73 L+S EQ A + A AGSGKT +L RV L+ P +L +T T Sbjct: 8 LVSGLNPEQAKAVKHTDGPLLIMAGAGSGKTRVLTHRVAYLMAAKQVAPWNILAITFTNK 67 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ + + V Sbjct: 68 AAREMRDRISRLVGGVA--------------------------------------NDIWV 89 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ C ++++ + +F I D + A K L LD + ++ Sbjct: 90 STFHSMCVRMLRRDIEKIGYNRNFTILDSSDQ----QSALKLVLKEQNLDPKKWDPRSML 145 Query: 194 EILEISNDE 202 I+ +E Sbjct: 146 SIISSQKNE 154 >gi|221140358|ref|ZP_03564851.1| ATP-dependent DNA helicase PcrA [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302751778|gb|ADL65955.1| ATP-dependent DNA helicase, PcrA [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 730 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 67/189 (35%), Gaps = 44/189 (23%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ +EQ A + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ + + + + Sbjct: 64 AAREMKERVQKLVGDQAEV--------------------------------------IWM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ C I+++ I +F I D K K L + +D+ + + F Sbjct: 86 STFHSMCVRILRRDADRIGIERNFTIIDPTDQKS----VVKDVLKNENIDSKKFEPRMFI 141 Query: 194 EILEISNDE 202 + +E Sbjct: 142 GAISNLKNE 150 >gi|145589895|ref|YP_001156492.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048301|gb|ABP34928.1| ATP-dependent DNA helicase UvrD [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 787 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 67/198 (33%), Gaps = 51/198 (25%) Query: 15 DLISQTKSEQLLASD--------PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 DL++ EQ A +SA + A AGSGKT +L R+ L+ P + Sbjct: 4 DLLANLNPEQREAVTLPPVNPHGQAQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPIGV 63 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T AA EM R+ ++ Sbjct: 64 LAVTFTNKAAKEMMVRLSAMLPI------------------------------------- 86 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 G+ + T H C +++ EA + S F I D + A K L + +D+ Sbjct: 87 -NTRGMWIGTFHGLCNRLLRAHHKEAGLPSTFQILDTQDQLS----AIKRLLKGLKVDDE 141 Query: 186 EELKKAFYEILEISNDED 203 + K + + + Sbjct: 142 KYPPKQLQYFIAHAKERG 159 >gi|254556106|ref|YP_003062523.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum JDM1] gi|254045033|gb|ACT61826.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum JDM1] Length = 755 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 64/188 (34%), Gaps = 44/188 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L +Q D + A AGSGKT +L RV L+ +P +L +T T A Sbjct: 7 LAGMNDKQQEAVLDTEGPLLIMAGAGSGKTRVLTHRVAYLIEEQGVNPWNVLAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +++ E+ + V Sbjct: 67 AREMRERVGKLLG--------------------------------------ESAQEVWVS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFY 193 T HA C I+++ + F IA + + L K L +D+ + + + Sbjct: 89 TFHALCVRILRRDIEQIGYNRAFTIAGTSEQRTL----VKRILTEQNIDSKKFDPRSILS 144 Query: 194 EILEISND 201 I ND Sbjct: 145 AISNAKND 152 >gi|28377922|ref|NP_784814.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum WCFS1] gi|308180103|ref|YP_003924231.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270756|emb|CAD63661.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum WCFS1] gi|308045594|gb|ADN98137.1| ATP-dependent DNA helicase PcrA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 755 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 64/188 (34%), Gaps = 44/188 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L +Q D + A AGSGKT +L RV L+ +P +L +T T A Sbjct: 7 LAGMNDKQQEAVLDTEGPLLIMAGAGSGKTRVLTHRVAYLIEEQGVNPWNVLAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +++ E+ + V Sbjct: 67 AREMRERVGKLLG--------------------------------------ESAQEVWVS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFY 193 T HA C I+++ + F IA + + L K L +D+ + + + Sbjct: 89 TFHALCVRILRRDIEQIGYNRAFTIAGTSEQRTL----VKRILTEQNIDSKKFDPRSILS 144 Query: 194 EILEISND 201 I ND Sbjct: 145 AISNAKND 152 >gi|270292732|ref|ZP_06198943.1| exonuclease RexA [Streptococcus sp. M143] gi|270278711|gb|EFA24557.1| exonuclease RexA [Streptococcus sp. M143] Length = 1217 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 79/223 (35%), Gaps = 31/223 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L L T T AA E+ Sbjct: 29 TAEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEIRQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + KI + SD+ +HL + + P + T+ +F Sbjct: 89 ERLEK------------------KISQQIQESSDVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIML-DNNEELKKAFYEILE 197 + + + +I +F I +E + L E +N E+ + Sbjct: 130 TQKFLGKHGYLIDIAPNFRILQNESEQLILKNEVFHQVFEEHYQGENKEKFSRLVKNFAG 189 Query: 198 ISNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 DE R + K+ F S +K + +S Sbjct: 190 RGKDER---------GLRQQVYKIYDFLQSTSSPQKWLNESFL 223 >gi|237719544|ref|ZP_04550025.1| ATP-dependent DNA helicase [Bacteroides sp. 2_2_4] gi|229451404|gb|EEO57195.1| ATP-dependent DNA helicase [Bacteroides sp. 2_2_4] Length = 575 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 57/165 (34%), Gaps = 40/165 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHT 71 + I + Q A + V A AGSGKT +L ++ LL +P +L LT T Sbjct: 4 NYIDELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLEQENGYNPWNILALTFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ + M +AR+L Sbjct: 64 NKAAREMKERIARQVG--------------------------MERARYL----------- 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ TS F I D SK L+ K Sbjct: 87 WMGTFHSIFSRILRAEATFIGFTSQFTIYDTADSKSLLRSIIKEM 131 >gi|160889899|ref|ZP_02070902.1| hypothetical protein BACUNI_02330 [Bacteroides uniformis ATCC 8492] gi|317478904|ref|ZP_07938052.1| UvrD/REP helicase [Bacteroides sp. 4_1_36] gi|156860891|gb|EDO54322.1| hypothetical protein BACUNI_02330 [Bacteroides uniformis ATCC 8492] gi|316904938|gb|EFV26744.1| UvrD/REP helicase [Bacteroides sp. 4_1_36] Length = 784 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 39/167 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 + I+ +++ + +L +D + V A AGSGKT +L ++ LL P +L LT Sbjct: 1 MPDYIEELNEGQRNAVLYND--GPSLVIAGAGSGKTRVLTYKIAYLLENGYQPWNILALT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ + +ARHL Sbjct: 59 FTNKAAREMKERIARQMGP--------------------------ERARHL--------- 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I+ TS F I D SK LI K Sbjct: 84 --WMGTFHSMFLRILHVEAGHIGFTSQFTIYDTADSKSLIRSIIKEM 128 >gi|227545941|ref|ZP_03975990.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213575|gb|EEI81424.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 910 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 40/158 (25%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ +Q A ++ + A AGSGKT +L +R+ +L A PS +L +T T Sbjct: 24 ELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 83 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ +I + + Sbjct: 84 KAAAEMRERLGSLIGPVAQ--------------------------------------RMW 105 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 V T H+ C I+++ + S F+I D S++L++ Sbjct: 106 VSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERLVK 143 >gi|323345276|ref|ZP_08085499.1| ATP-dependent helicase [Prevotella oralis ATCC 33269] gi|323093390|gb|EFZ35968.1| ATP-dependent helicase [Prevotella oralis ATCC 33269] Length = 1102 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 87/184 (47%), Gaps = 8/184 (4%) Query: 9 EHSETIDLIS---QTKSEQLLASDPTRSAWV-SANAGSGKTHILVQRVLRLLLANAH-PS 63 E++ +DL +T++ + + R V A+AG+GKT L R ++LL+ N Sbjct: 2 ENNSGLDLFHKGLETQTCSGVVQNRYRPITVYKASAGTGKTFTLATRYIKLLIDNPDSFR 61 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMS-KARHLLI 122 +L +T T A EM R+L + +H + I+ + ++ +A+ L Sbjct: 62 NILAVTFTNKATEEMKMRILSQLYGIAHHLPDSEEYLNKVIEITGATEEYIASQAKVALS 121 Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 ++ +V+TI F ++I++ E ++T++ I E +++ ++A + + ++ Sbjct: 122 NLVHNYSYFRVETIDTFFQSILRNLARELDLTANLRI--ELNDRQIEQQAVDTLIEELVP 179 Query: 183 DNNE 186 + E Sbjct: 180 ASKE 183 >gi|315077282|gb|EFT49344.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL053PA2] Length = 810 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 40/163 (24%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL+ Q A V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 40 DLLVDLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV++++ + + Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V T H+ I++ I+ +F+I D+ +K+LI + Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164 >gi|314979801|gb|EFT23895.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL072PA2] gi|315090029|gb|EFT62005.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL072PA1] Length = 810 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 40/163 (24%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL+ Q A V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 40 DLLVDLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV++++ + + Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V T H+ I++ I+ +F+I D+ +K+LI + Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164 >gi|121604380|ref|YP_981709.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2] gi|120593349|gb|ABM36788.1| ATP-dependent DNA helicase UvrD [Polaromonas naphthalenivorans CJ2] Length = 781 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 70/209 (33%), Gaps = 45/209 (21%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P A + A AGSGKT +L R+ LL P +L +T T AA EM R+ ++ Sbjct: 4 PATHALILAGAGSGKTRVLTTRIAWLLQTGQVSPGGILAVTFTNKAAKEMLTRLSAMLPI 63 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 G+ + T H C ++ Sbjct: 64 --------------------------------------NVRGMWIGTFHGLCNRFLRAHY 85 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE--T 206 AN+ S F I D + I+ K +D+ K + ++ + Sbjct: 86 KLANLPSTFQILDTQDQLSAIKRLSKQF----GIDDERFPPKDLMRFIAGCKEDGLRAKD 141 Query: 207 LISDIISNRTALKLIFFFFSYLWRRKIIE 235 + + ++R +++ + R +++ Sbjct: 142 VPAHDENSRKKVEIYDLYEQQCQREGVVD 170 >gi|86159793|ref|YP_466578.1| ATP-dependent DNA helicase Rep [Anaeromyxobacter dehalogenans 2CP-C] gi|85776304|gb|ABC83141.1| ATP-dependent DNA helicase, Rep family [Anaeromyxobacter dehalogenans 2CP-C] Length = 671 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 54/164 (32%), Gaps = 38/164 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL + ++ V A AGSGKT ++ RV LL+ P +L +T T Sbjct: 1 MLDLSTLNPPQREAVMTTEGPLLVLAGAGSGKTRVIAHRVAYLLVQGVDPEQVLAVTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV + + Sbjct: 61 KAAGEMRERVAALAGPPGV--------------------------------------DVF 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+F ++QQ A + FAI D L++ + Sbjct: 83 VSTFHSFGLWLLQQEHEAAGLPRRFAICDAGDQLALVKRCMREV 126 >gi|254462521|ref|ZP_05075937.1| UvrD/REP helicase domain protein [Rhodobacterales bacterium HTCC2083] gi|206679110|gb|EDZ43597.1| UvrD/REP helicase domain protein [Rhodobacteraceae bacterium HTCC2083] Length = 817 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 71/193 (36%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 +D ++ + E + + A AG+GKT L R++ L+ A A P+ +L +T T Sbjct: 29 YLDGLNPAQREAVETL--YGPVLMLAGAGTGKTKALTARIVHLMNAAKARPNEILAVTFT 86 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM +RV ++ G Sbjct: 87 NKAAREMKNRVGGMLGQSIE-------------------------------------GMP 109 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T HA C ++++ + S+F I D + +L+++ L + +D+ + Sbjct: 110 WLGTFHAICVKLLRRHAELVGLKSNFTILDTDDQIRLLKQ----LLRAESIDDKRWPARM 165 Query: 192 FYEILEISNDEDI 204 ++ + + Sbjct: 166 LAGFIDGWKNRAL 178 >gi|289432882|ref|YP_003462755.1| UvrD/REP helicase [Dehalococcoides sp. GT] gi|288946602|gb|ADC74299.1| UvrD/REP helicase [Dehalococcoides sp. GT] Length = 738 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 63/166 (37%), Gaps = 41/166 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 + + ++ + + + A + + A GSGKT ++ R+ L+ + P ++ +T Sbjct: 3 DILTGLNPAQKKAVEAVE--GPVLILAGPGSGKTRVITHRIAYLIKVVGITPHRIMAVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + G Sbjct: 61 TNKAAREMETRLNQLAPSAV--------------------------------------GR 82 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L + T HA C I++Q L + S F I D++ + LI++A Sbjct: 83 LTMGTFHAICARILRQDGLPLGVPSDFVIYDDDDQQSLIKQAMAEL 128 >gi|260906166|ref|ZP_05914488.1| putative ATP-dependent DNA helicase II [Brevibacterium linens BL2] Length = 850 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 65/169 (38%), Gaps = 40/169 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 S +L++ Q A T S + A AGSGKT +L +R+ L AHP +L Sbjct: 16 DSRAAELLTGLNPRQREAVAHTGSPLLIVAGAGSGKTTVLTRRIAYALATGRAHPGEVLA 75 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM+ RV I+ S Sbjct: 76 ITFTNKAAKEMAERVRSIVGPASR------------------------------------ 99 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ + S+F I D + +++L+ + K Sbjct: 100 --AMWVSTFHSSCVRILRREAKVLGMKSNFTIYDSQDAQRLVSQILKEL 146 >gi|5542368|pdb|1QHH|A Chain A, Structure Of Dna Helicase With Adpnp Length = 167 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L K +Q + A AGSGKT +L R+ L+ + P +L +T T A Sbjct: 9 LAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ + + + Sbjct: 69 AREMRERVQSLLGGAAE--------------------------------------DVWIS 90 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F+I D +++ K Sbjct: 91 TFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKE 131 >gi|153062|gb|AAA72091.1| helicase [Staphylococcus aureus] gi|742312|prf||2009360A helicase Length = 675 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L++ +EQ A + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LLNHMNTEQSEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ + + + + Sbjct: 64 AAREMKERVQKLVGDQAEV--------------------------------------IWM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D K +I++ K+ Sbjct: 86 STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127 >gi|314969858|gb|EFT13956.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA1] Length = 810 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 40/163 (24%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL+ Q A V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 40 DLLVDLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV++++ + + Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V T H+ I++ I+ +F+I D+ +K+LI + Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164 >gi|220918612|ref|YP_002493916.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956466|gb|ACL66850.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1] Length = 671 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 54/164 (32%), Gaps = 38/164 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL + ++ V A AGSGKT ++ RV LL+ P +L +T T Sbjct: 1 MLDLSTLNPPQREAVMTTEGPLLVLAGAGSGKTRVIAHRVAYLLVQGVDPEQVLAVTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV + + Sbjct: 61 KAAGEMRERVAALAGPPGV--------------------------------------DVF 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+F ++QQ A + FAI D L++ + Sbjct: 83 VSTFHSFGLWLLQQEHEAAGLPRRFAICDAGDQLALVKRCMREV 126 >gi|327451777|gb|EGE98431.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL083PA2] Length = 810 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 40/163 (24%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL+ Q A V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 40 DLLVDLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV++++ + + Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V T H+ I++ I+ +F+I D+ +K+LI + Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164 >gi|313817909|gb|EFS55623.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL046PA2] Length = 810 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 40/163 (24%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL+ Q A V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 40 DLLVDLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV++++ + + Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V T H+ I++ I+ +F+I D+ +K+LI + Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164 >gi|283778550|ref|YP_003369305.1| UvrD/REP helicase [Pirellula staleyi DSM 6068] gi|283437003|gb|ADB15445.1| UvrD/REP helicase [Pirellula staleyi DSM 6068] Length = 800 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 42/182 (23%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 S +D + T +++ + A GSGKT ++ RV +L + +L LT Sbjct: 20 SPLLDSL--TDAQRAAVCHIEGPLLILAGPGSGKTRVVTHRVAWMLASGIPARQILALTF 77 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ + + Sbjct: 78 TNKAADEMRGRLERLAPRQA---------------------------------------- 97 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + + T H FC +++ + + +F+I D + S+K+++ A + + + + + Sbjct: 98 VWMGTFHRFCARMLRSYAELVGLRENFSIYDTDDSRKILQIALDEEGIDLTHTSPDAIAQ 157 Query: 191 AF 192 A Sbjct: 158 AI 159 >gi|239916963|ref|YP_002956521.1| ATP-dependent DNA helicase PcrA [Micrococcus luteus NCTC 2665] gi|281414579|ref|ZP_06246321.1| ATP-dependent DNA helicase PcrA [Micrococcus luteus NCTC 2665] gi|239838170|gb|ACS29967.1| ATP-dependent DNA helicase PcrA [Micrococcus luteus NCTC 2665] Length = 858 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 51/157 (32%), Gaps = 39/157 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 + + + A AGSGKT +L R+ LL A P +L +T T AAAEM Sbjct: 71 NPQQSAAVTHTGAPLLIVAGAGSGKTRVLTHRIAWLLATGRARPHEILAITFTNKAAAEM 130 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +I T + + T H+ Sbjct: 131 RERVAGLIGP--------------------------------------TAQRMWISTFHS 152 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 +++ + S F I D S +L+ K Sbjct: 153 SAVRLLRNEAANIGLKSTFTIYDSADSLRLVTTVAKQ 189 >gi|319957659|ref|YP_004168922.1| uvrd/rep helicase [Nitratifractor salsuginis DSM 16511] gi|319420063|gb|ADV47173.1| UvrD/REP helicase [Nitratifractor salsuginis DSM 16511] Length = 915 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 11/208 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 +SA+AGSGKT L R + LL S++L T T AAAEM HRV+E + Sbjct: 7 LALSASAGSGKTFALSVRYVALLFLGESSSSILAATFTNKAAAEMRHRVVEALRRLDEAD 66 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 E+ K G P++ ++K +L L++P + T+ +F ++++ LE + Sbjct: 67 FAPFLGELAKQTGLSPDE-ILAKRPGVLRRFLDSPT--HIVTLDSFFVSVLKAGALEIGL 123 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 F +E ++EA L + E + E+ +E + + S Sbjct: 124 DPGFVTKEEASVG--LQEAFLEEL------DREGMLPVLVELAIQMERRRVEGMTESLAS 175 Query: 214 NRTALKLIFFFFSYLWRRKIIEKSLWSI 241 L+ F + +E + ++ Sbjct: 176 LYAQDPLLPPFPEGDGTLRGLEGEIEAL 203 >gi|170751333|ref|YP_001757593.1| UvrD/REP helicase [Methylobacterium radiotolerans JCM 2831] gi|170657855|gb|ACB26910.1| UvrD/REP helicase [Methylobacterium radiotolerans JCM 2831] Length = 797 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 67/195 (34%), Gaps = 43/195 (22%) Query: 12 ETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 E+ + EQ A + T V A AG+GKT +L R+ L+ A P +L +T Sbjct: 30 ESAGYLEGLNPEQRRAVETTEGPVLVLAGAGTGKTRVLTTRIAHLIATGRARPFDILAVT 89 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM HR+ +I G Sbjct: 90 FTNKAAREMKHRIGALIGPAGE-------------------------------------G 112 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + T HA I+++ + S F I + +L+++ +A +D Sbjct: 113 MPWLGTFHAIGTKILRRHAELVGLKSDFTILGTDDQLRLMKQ----VIADQNVDEKRWPA 168 Query: 190 KAFYEILEISNDEDI 204 +A ++ + + Sbjct: 169 RALSHAVDGWKNRGL 183 >gi|85703443|ref|ZP_01034547.1| DNA helicase II, putative [Roseovarius sp. 217] gi|85672371|gb|EAQ27228.1| DNA helicase II, putative [Roseovarius sp. 217] Length = 779 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 39/162 (24%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 + EQ A++ + A AG+GKT L R++ L+ A P +L +T T Sbjct: 27 YLDDLNPEQRRAAETLDGPVLMLAGAGTGKTKALTTRIVHLMNTGRAGPGDILAVTFTNK 86 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++ + G + Sbjct: 87 AAREMKERVGRLLGQPAE-------------------------------------GMPWL 109 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C ++++ ++ S+F I D + +L+++ ++ Sbjct: 110 GTFHSICVKLLRRHAELVDLKSNFTILDTDDQLRLLKQLVQA 151 >gi|123965572|ref|YP_001010653.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9515] gi|123199938|gb|ABM71546.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9515] Length = 802 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 85/225 (37%), Gaps = 28/225 (12%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q H+ + ++ ++ + V A AGSGKT L R+ L+ + P +L Sbjct: 3 QTHNFLFNSLN--NAQLKAVNHINGPLLVVAGAGSGKTKALTHRIANLIENHSVDPHNIL 60 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ ++ + K + ++++ + R Sbjct: 61 AVTFTNKAAKEMKARLQVLLAQELAFNQFGQPWATLKEFDQNQLRTNIDQER-------- 112 Query: 127 TPGGLKVQTIHAFCEAIMQ------QFPLEANITSHFAIADEEQSKKLIEEAKKSTLA-S 179 L + T H+ +++ Q P T F+I DE S+ L++E ++ Sbjct: 113 -LKDLWIGTFHSLFSRLLRYDIEKYQDPEGLRWTRQFSIYDETDSQTLVKEIISQDMSLD 171 Query: 180 IMLDNNEELKKAFYEI---------LEISNDEDIETLISDIISNR 215 + +++K+A LE D + +I+D Sbjct: 172 PKRFDPKKIKRAISNAKNQCFTAKELEEKADNHFDKVIADAYRRY 216 >gi|212550968|ref|YP_002309285.1| ATP-dependent DNA helicase II [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549206|dbj|BAG83874.1| ATP-dependent DNA helicase II [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 743 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 65/166 (39%), Gaps = 39/166 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 ++ + +++++ E ++ +D + V A AGSGKT ++ ++ LL P ++L LT Sbjct: 1 MADFLQQLNESQREAVIYND--GPSLVIAGAGSGKTRVITYKIAYLLKNGISPHSILALT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV EII Sbjct: 59 FTNKAAREMKVRVTEIIGENMTRL------------------------------------ 82 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 L + T H+ I+++ S F I D++ SK LI+ K Sbjct: 83 -LWIGTFHSIFSKILRREASRIGFYSDFTIYDKQDSKNLIKNIIKE 127 >gi|116873192|ref|YP_849973.1| ATP-dependent DNA helicase PcrA [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742070|emb|CAK21194.1| ATP-dependent DNA helicase, PcrA family [Listeria welshimeri serovar 6b str. SLCC5334] Length = 733 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E +D ++ ++ + A AGSGKT +L R+ L+ + +P +L +T Sbjct: 7 ELVDGLN--PEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERSVNPYNILAITF 64 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + Sbjct: 65 TNKAAREMKSRIGNLMGGEAE--------------------------------------S 86 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ +F I D +I+ K Sbjct: 87 IWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKE 131 >gi|91201897|emb|CAJ74957.1| similar to ATP-dependent DNA helicase subunit AddA [Candidatus Kuenenia stuttgartiensis] Length = 1198 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 13/173 (7%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-------LLCLTHT 71 K +L S+ ++ ++A AG+GKT ILVQR+L LLLA+ + ++ LT T Sbjct: 36 DRKIRELAVSEQHKNIVLTAGAGTGKTTILVQRILHLLLAHKSLQSEESPILKIIALTFT 95 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK------SDMSKARHLLITIL 125 + AA+EM R++E + I E + + + S+ + L Sbjct: 96 EKAASEMKIRLMEELEKIVAAMKGICRPEESSQVNNFISDLQTTYHTTYSEIERRAVQSL 155 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 + TIH+F I++ FP+E+ + F + + + L E+ L Sbjct: 156 ADMDKAMICTIHSFAAYILRMFPIESGVAPGFTVDEGSVFEDLFEKEWPDWLE 208 >gi|257459106|ref|ZP_05624225.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter gracilis RM3268] gi|257443491|gb|EEV18615.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter gracilis RM3268] Length = 479 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 16/175 (9%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + L+L + +L LT TK AAAEM R++E + Sbjct: 8 LALEASAGSGKTFNLAVRFIELVLKGEPINEILALTFTKKAAAEMKTRIVEKFQNLLIVR 67 Query: 94 DEIL--SAEITKIQGKKPNKSD--MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 D L S E+ +I +D ++ R LL L L V T AF ++ F L Sbjct: 68 DGALVPSPELAQICEDLNMSADEVLAAQRRLLPKFLN--ESLNVFTFDAFFAKALRSFAL 125 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204 + I F + ++S +++ + L++I D E+++ +D + Sbjct: 126 NSGIDPGF---ENDESILGVQQ--REFLSAICKDG-----AILREVVDYVSDSGM 170 >gi|225858940|ref|YP_002740450.1| recombination helicase AddA [Streptococcus pneumoniae 70585] gi|225720195|gb|ACO16049.1| recombination helicase AddA [Streptococcus pneumoniae 70585] Length = 1216 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVELKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L+E + + + + K+ F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + +S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223 >gi|294787676|ref|ZP_06752920.1| DNA helicase II [Simonsiella muelleri ATCC 29453] gi|294483969|gb|EFG31652.1| DNA helicase II [Simonsiella muelleri ATCC 29453] Length = 735 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 75/230 (32%), Gaps = 49/230 (21%) Query: 12 ETIDLISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 T DL+ +Q A +P SA + A AGSGKT +L R+ LL +A ++ + Sbjct: 6 NTPDLLRHLNPQQAQAVECNPKTSALILAGAGSGKTRVLTTRIAWLLQNQHAGVHNIMAV 65 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R+ ++ Sbjct: 66 TFTNKAAKEMQTRLSAMLPY--------------------------------------NL 87 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + + T H C ++ +A + F I D +I K L + +D Sbjct: 88 RAMWLGTFHGICNRFLRLHYRDAGLPQTFQILDSSDQASII----KRLLKQLNIDEKSLA 143 Query: 189 KKAFYEILEISNDEDIETLISDI---ISNRTALKLIFFFFSYLWRRKIIE 235 + + + + + D + R +K + R +++ Sbjct: 144 PRTLQGFINAQKEAGLRANVLDAPDPFTQR-LIKCYAEYEQLCQREGVVD 192 >gi|282880688|ref|ZP_06289390.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1] gi|281305414|gb|EFA97472.1| UvrD/REP helicase [Prevotella timonensis CRIS 5C-B1] Length = 1076 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 88/191 (46%), Gaps = 10/191 (5%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITA 88 P+ A+AGSGKT L +++++ N + +L +T T A EM R+L + Sbjct: 6 PSSLTISKASAGSGKTFKLATEYIKIVIDNPYAYRNILAVTFTNKATEEMKIRILSQLYG 65 Query: 89 WSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 +H LSD + K +K +A L +L +V+TI +F +++++ Sbjct: 66 IAHGLSDSESYLQEVKKALDLSDKQISERAEKALDLLLHNYSYFRVETIDSFFQSVLRNL 125 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE--ISNDEDIE 205 E ++T++ I E K++ E+A + + ++L + +E I++D+ Sbjct: 126 ARELDLTANLRI--ELNDKEIQEKAVDQLIEELH--PKQQLLGWILDFIEQKIADDKSWN 181 Query: 206 --TLISDIISN 214 LI D +N Sbjct: 182 VIGLIKDFGNN 192 >gi|251799681|ref|YP_003014412.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. JDR-2] gi|247547307|gb|ACT04326.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. JDR-2] Length = 785 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 41/166 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70 + + ++ + + + A+D + A AGSGKT +L R+ L+ P ++L +T Sbjct: 9 QAVQKLNPPQRDAVQATD--GPLLIMAGAGSGKTRVLTHRIAYLIEKKRVAPWSILAITF 66 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV +I T Sbjct: 67 TNKAAREMQARVAALIGP--------------------------------------TGQD 88 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I+++ TS+F+I D +I K Sbjct: 89 IWVSTFHSMCVRILRRDIDRIGFTSNFSILDSADQLSVIRNCMKEL 134 >gi|298208568|ref|YP_003716747.1| putative helicase [Croceibacter atlanticus HTCC2559] gi|83848491|gb|EAP86360.1| putative helicase [Croceibacter atlanticus HTCC2559] Length = 773 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 56/165 (33%), Gaps = 38/165 (23%) Query: 13 TIDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 ID + Q + V A AGSGKT +L R+ L+ P +L LT T Sbjct: 1 MIDYLKGLNDAQRAPVLQKDGAMIVIAGAGSGKTRVLTMRIAHLMKNGVDPFNILSLTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ EI+ A + L Sbjct: 61 NKAAKEMKKRISEIVGASEAKN-------------------------------------L 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ + S+F I D + S+ LI K Sbjct: 84 WMGTFHSIFAKILRFEADKLGYPSNFTIYDTQDSQSLIRAIIKEM 128 >gi|289424917|ref|ZP_06426696.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK187] gi|289427700|ref|ZP_06429412.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J165] gi|295131282|ref|YP_003581945.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK137] gi|289154616|gb|EFD03302.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK187] gi|289159191|gb|EFD07383.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J165] gi|291375534|gb|ADD99388.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes SK137] gi|313763127|gb|EFS34491.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL013PA1] gi|313773164|gb|EFS39130.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL074PA1] gi|313793367|gb|EFS41425.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA1] gi|313800989|gb|EFS42257.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA2] gi|313808729|gb|EFS47183.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA2] gi|313810354|gb|EFS48068.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL083PA1] gi|313816467|gb|EFS54181.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL059PA1] gi|313819821|gb|EFS57535.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA1] gi|313823311|gb|EFS61025.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA2] gi|313824786|gb|EFS62500.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL063PA1] gi|313828273|gb|EFS65987.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL063PA2] gi|313830207|gb|EFS67921.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL007PA1] gi|313832960|gb|EFS70674.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL056PA1] gi|313838057|gb|EFS75771.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL086PA1] gi|314917767|gb|EFS81598.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA1] gi|314919507|gb|EFS83338.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL050PA3] gi|314925815|gb|EFS89646.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL036PA3] gi|314930099|gb|EFS93930.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL067PA1] gi|314957100|gb|EFT01205.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL027PA1] gi|314957690|gb|EFT01793.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA1] gi|314960758|gb|EFT04859.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA2] gi|314972985|gb|EFT17081.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL053PA1] gi|314975621|gb|EFT19716.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL045PA1] gi|314984812|gb|EFT28904.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA1] gi|314986165|gb|EFT30257.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA2] gi|314988777|gb|EFT32868.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA3] gi|315079961|gb|EFT51937.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL078PA1] gi|315083289|gb|EFT55265.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL027PA2] gi|315086938|gb|EFT58914.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL002PA3] gi|315096648|gb|EFT68624.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL038PA1] gi|315097877|gb|EFT69853.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL059PA2] gi|315100641|gb|EFT72617.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL046PA1] gi|315109268|gb|EFT81244.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL030PA2] gi|327325064|gb|EGE66870.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL096PA3] gi|327325309|gb|EGE67114.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL096PA2] gi|327443823|gb|EGE90477.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL043PA1] gi|327449135|gb|EGE95789.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL043PA2] gi|327449263|gb|EGE95917.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL013PA2] gi|327451317|gb|EGE97971.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA3] gi|327451706|gb|EGE98360.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL092PA1] gi|328752262|gb|EGF65878.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL087PA1] gi|328755353|gb|EGF68969.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL025PA2] gi|328756392|gb|EGF70008.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL020PA1] gi|328761099|gb|EGF74648.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL099PA1] Length = 810 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 40/163 (24%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL+ Q A V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 40 DLLVDLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV++++ + + Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V T H+ I++ I+ +F+I D+ +K+LI + Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164 >gi|147669647|ref|YP_001214465.1| UvrD/REP helicase [Dehalococcoides sp. BAV1] gi|146270595|gb|ABQ17587.1| UvrD/REP helicase [Dehalococcoides sp. BAV1] Length = 738 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 63/166 (37%), Gaps = 41/166 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 + + ++ + + + A + + A GSGKT ++ R+ L+ + P ++ +T Sbjct: 3 DILTGLNPAQKKAVEAVE--GPVLILAGPGSGKTRVITHRIAYLIKVVGITPHRIMAVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ + G Sbjct: 61 TNKAAREMETRLNQLAPSAV--------------------------------------GR 82 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L + T HA C I++Q L + S F I D++ + LI++A Sbjct: 83 LTMGTFHAICARILRQDGLPLGVPSDFVIYDDDDQQSLIKQAMAEL 128 >gi|229542654|ref|ZP_04431714.1| UvrD/REP helicase [Bacillus coagulans 36D1] gi|229327074|gb|EEN92749.1| UvrD/REP helicase [Bacillus coagulans 36D1] Length = 232 Score = 124 bits (313), Expect = 6e-27, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 68/191 (35%), Gaps = 44/191 (23%) Query: 17 ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 ++ EQ A + A AGSGKT +L +RV L++ +P +L +T T A Sbjct: 9 LNGLNPEQKEAVKTTEGPLLILAGAGSGKTRVLTRRVAYLMVEKGVNPYNILAITFTNKA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ I+ + + + Sbjct: 69 AREMKDRIAGIMGGAAE--------------------------------------EVWIS 90 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C I+++ +F+I D +I K+ L LD + +A Sbjct: 91 TFHSMCVRILRRDIDRIGFNRNFSILDATDQLSVI----KNLLKEKNLDPKKFDPRAILG 146 Query: 195 ILEISNDEDIE 205 + + +E I+ Sbjct: 147 KISSAKNELID 157 >gi|314914443|gb|EFS78274.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL005PA4] Length = 810 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 40/163 (24%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL+ Q A V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 40 DLLVDLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV++++ + + Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V T H+ I++ I+ +F+I D+ +K+LI + Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164 >gi|312887473|ref|ZP_07747072.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603] gi|311300113|gb|EFQ77183.1| UvrD/REP helicase [Mucilaginibacter paludis DSM 18603] Length = 758 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 71/220 (32%), Gaps = 48/220 (21%) Query: 14 IDLISQTK-SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D + S+Q + A AGSGKT ++ RV L+ +L LT T Sbjct: 1 MDYLKGLNPSQQQAVLQTEGPVMIIAGAGSGKTRVITYRVAHLVQKGVDSFNILVLTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R++ + + + Sbjct: 61 KAAREMRERIMHVAGPDAK--------------------------------------NIW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNN------ 185 + T H+ I++ + S+F I D + SK ++ K L + + N Sbjct: 83 MGTFHSVFAKILRVEADKIGYPSNFTIYDTDDSKSVLRAIIKEMSLDDKLYNQNFVMSRI 142 Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFF 225 K E + DI+ D S R L I+ + Sbjct: 143 SASKNNLVSWQEYQQNPDIQA--DDFSSGRGQLGKIYENY 180 >gi|291459846|ref|ZP_06599236.1| ATP-dependent helicase PcrA [Oribacterium sp. oral taxon 078 str. F0262] gi|291417636|gb|EFE91355.1| ATP-dependent helicase PcrA [Oribacterium sp. oral taxon 078 str. F0262] Length = 834 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 65/192 (33%), Gaps = 44/192 (22%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL EQL A V A AGSGKT +L R+ L+ P +L +T T Sbjct: 53 DLEKILNKEQLSAVKQTEGPLLVLAGAGSGKTRVLTYRIAYLIENCGVAPWHILAITFTN 112 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV E++ A + Sbjct: 113 KAAEEMRKRVDELLCAGG--------------------------------------AAVW 134 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T H+ C I+++ F+I D E + ++ + + +D ++A Sbjct: 135 VSTFHSMCVRILRRRIEAIGYGPDFSIYDAEDQRTVM----RQLFKELQIDPKSFRERAV 190 Query: 193 YEILEISNDEDI 204 + + + I Sbjct: 191 LSAISAAKNAGI 202 >gi|311029280|ref|ZP_07707370.1| ATP-dependent DNA helicase PcrA [Bacillus sp. m3-13] Length = 767 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 58/165 (35%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70 ++ ++ + E + +D + A AGSGKT +L R+ L+ P +L +T Sbjct: 7 RLLEGLNPMQKEAVKKTD--GPLLIMAGAGSGKTKVLTHRIAYLMAEKQVAPWNILAITF 64 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV +++ + Sbjct: 65 TNKAAREMKERVEKLLGPAAE--------------------------------------D 86 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ C I+++ + +F I D +I+ K Sbjct: 87 IWISTFHSMCVRILRRDIDRIGMNRNFTILDTTDQLSVIKNILKD 131 >gi|125624253|ref|YP_001032736.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris MG1363] gi|124493061|emb|CAL98025.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris MG1363] gi|300071034|gb|ADJ60434.1| ATP-dependent DNA helicase [Lactococcus lactis subsp. cremoris NZ9000] Length = 758 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 81/234 (34%), Gaps = 47/234 (20%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + + +++ +++ + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLQGMNEKQAQAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R A L +T Sbjct: 59 TFTNKAAKEMRER-----------------------------------ALSLTPRAQDTL 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D K L+ K L LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIIDPGDQKSLM----KRILKEANLDPKKWE 135 Query: 189 KKAFYEIL-EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 K + ND ET I+ R +++ ++++++ + Sbjct: 136 PKGLLNAISNAKNDLLDETAYEAQITARHPYEMVVARVYKIYQKELRKAESMDF 189 >gi|315498764|ref|YP_004087568.1| uvrd/rep helicase [Asticcacaulis excentricus CB 48] gi|315416776|gb|ADU13417.1| UvrD/REP helicase [Asticcacaulis excentricus CB 48] Length = 772 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 59/172 (34%), Gaps = 39/172 (22%) Query: 6 SFQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63 S S + D EQ A V A AG+GKT +L R+ +L A P Sbjct: 14 SVNGASFSSDFFKGLNPEQADAVRSTEGPVLVLAGAGTGKTRVLTTRIAHILAQGLARPW 73 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +LC+T T AA EM R ++ + + Sbjct: 74 EILCVTFTNKAAREMRERTTRLVGPSAEGLSNL--------------------------- 106 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ ++++ + S F I D++ +L+++ ++ Sbjct: 107 ----------GTFHSIAAQMLRRHAELVGLKSSFNIIDDDDQTRLLKQIMEA 148 >gi|325955681|ref|YP_004239341.1| UvrD/REP helicase [Weeksella virosa DSM 16922] gi|323438299|gb|ADX68763.1| UvrD/REP helicase [Weeksella virosa DSM 16922] Length = 772 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 38/163 (23%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + + Q Q LA + + A AGSGKT +L R+ L+ P +L LT T Sbjct: 3 NYLEQLNEPQRLAVEATEGPVMIIAGAGSGKTRVLTYRIAHLMNKGVDPFNILSLTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ A + L + Sbjct: 63 AAREMKERISSVVGASEAKN-------------------------------------LWM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ S+F I D++ + ++ + Sbjct: 86 GTFHSVFARILRTEAPLLGYPSNFTIYDQQDAVSVMSKVINEL 128 >gi|229095725|ref|ZP_04226704.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-29] gi|228687558|gb|EEL41457.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-29] Length = 1195 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 76/189 (40%), Gaps = 35/189 (18%) Query: 52 VLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKK 108 +++ ++ +P LL +T T AAA EM +R+ E + K+ + Sbjct: 1 MIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGEAL---------------EKVLIDE 45 Query: 109 PNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 P + K LL + TIH+FC +++ + ++ F IA++ +++ L Sbjct: 46 PGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELL 98 Query: 169 IEEAKKSTLASIM-LDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 EE L +++N + +D+D++ +I L L ++ Sbjct: 99 KEEVLDDILEEEYGIEDNSIFFELVDRYTSDRSDDDLQRMI---------LALHTESRAH 149 Query: 228 LWRRKIIEK 236 K ++K Sbjct: 150 PNPEKWLDK 158 >gi|124514961|gb|EAY56472.1| putative exodeoxyribonuclease V, beta subunit [Leptospirillum rubarum] Length = 1101 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 72/166 (43%), Gaps = 7/166 (4%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII---TAWSHL 92 + A+AG+GKT L L ++L+ P +L +T T+AAA ++ R+ +++ W Sbjct: 21 IEASAGTGKTTTLALLYLSVILSGVSPENILVVTFTRAAAQDVRERIQKLLEDVRQWRSG 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 S + ++ + R L L +QTIH+FC++++ Q Sbjct: 81 SKAEILPDLRAYLETLETDPLLLDMR--LREALVVFDRAPIQTIHSFCQSLLSQMSFLLG 138 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 ++ + E+Q ++ E+ S+ + L + F + E Sbjct: 139 APANLVLVPEDQ--PVLYESSVRLWRSLFYGRDSRLAEFFLSVWED 182 >gi|5734491|emb|CAB52698.1| DNA helicase [Prochlorococcus marinus] Length = 519 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 17/173 (9%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 I + EQ A D V A AGSGKT L R+ L+ PS +L +T T Sbjct: 5 ITFLDGLNKEQSKAVDHYEGPLLVVAGAGSGKTRALTHRIAHLISEYKVEPSEILAVTFT 64 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ + KI + ++ + + E + Sbjct: 65 NKAAREMKDRLEILLAQKLAKIEFGQPFSTLKISIQSELRTRIYR---------EVIKEI 115 Query: 132 KVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178 + T HA +++ ++ + + T HF+I DE+ + LI+E L Sbjct: 116 WIGTFHALFARLLRFDIEKYVDKEGLKWTRHFSIYDEKDALSLIKEIVTGDLQ 168 >gi|290967937|ref|ZP_06559487.1| ATP-dependent DNA helicase PcrA [Megasphaera genomosp. type_1 str. 28L] gi|290782076|gb|EFD94654.1| ATP-dependent DNA helicase PcrA [Megasphaera genomosp. type_1 str. 28L] Length = 738 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 56/163 (34%), Gaps = 45/163 (27%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + + + ++A AGSGKT +L R+ LL P +L +T T AA Sbjct: 5 FLGLNERQAEAVRQTEGPLLITAGAGSGKTKVLTCRIAYLLEKGVAPYRILAITFTNKAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV +++ ET + + T Sbjct: 65 KEMRERVEKLVG--------------------------------------ETAKSMWLST 86 Query: 136 IHAFCEAIMQQFPLEA----NITSHFAIADEEQSKKLIEEAKK 174 H+FC +++ E T +F I D +++E K Sbjct: 87 FHSFCAKLLR---FEIDGHFGYTRNFTIYDSTDQLTVVKECVK 126 >gi|168492513|ref|ZP_02716656.1| recombination helicase AddA [Streptococcus pneumoniae CDC0288-04] gi|183573318|gb|EDT93846.1| recombination helicase AddA [Streptococcus pneumoniae CDC0288-04] Length = 1216 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TTDQIEAIYTSGQNILVSASAGSGKTFVMAERILNQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L+E + + + + K+ F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSDSFL 223 >gi|313812190|gb|EFS49904.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL025PA1] Length = 810 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 40/163 (24%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL+ Q A V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 40 DLLVDLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV++++ + + Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V T H+ I++ I+ +F+I D+ +K+LI + Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLITLVTRD 164 >gi|294671393|ref|ZP_06736243.1| hypothetical protein NEIELOOT_03101 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291306941|gb|EFE48184.1| hypothetical protein NEIELOOT_03101 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 735 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|288554983|ref|YP_003426918.1| ATP-dependent DNA helicase [Bacillus pseudofirmus OF4] gi|288546143|gb|ADC50026.1| ATP-dependent DNA helicase [Bacillus pseudofirmus OF4] Length = 742 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 ++S EQ A+ + A AGSGKT +L R+ LL A P +L +T T Sbjct: 9 MLSGLNPEQRQATTHTEGPLLLMAGAGSGKTRVLTHRIAYLLREKAIAPWNVLAITFTNK 68 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ + + + Sbjct: 69 AAREMKDRVAKLVGPVAE--------------------------------------DIWI 90 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ +F I D +I++ K+ Sbjct: 91 STFHSMCVRILRRDIDRIGYNRNFTILDSSDQLSVIKQILKN 132 >gi|168486450|ref|ZP_02710958.1| recombination helicase AddA [Streptococcus pneumoniae CDC1087-00] gi|183570541|gb|EDT91069.1| recombination helicase AddA [Streptococcus pneumoniae CDC1087-00] Length = 1216 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 83/222 (37%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVELKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L+E + + + + K+ F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + KS Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSKSFL 223 >gi|197123847|ref|YP_002135798.1| UvrD/REP helicase [Anaeromyxobacter sp. K] gi|196173696|gb|ACG74669.1| UvrD/REP helicase [Anaeromyxobacter sp. K] Length = 671 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 54/164 (32%), Gaps = 38/164 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL + ++ V A AGSGKT ++ RV LL+ P +L +T T Sbjct: 1 MLDLSTLNPPQREAVMTTEGPLLVLAGAGSGKTRVIAHRVAYLLVQGVDPEQVLAVTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV + + Sbjct: 61 KAAGEMRERVAALAGPPGV--------------------------------------DVF 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+F ++QQ A + FAI D L++ + Sbjct: 83 VSTFHSFGLWLLQQEHEAAGLPRRFAICDAGDQLALVKRCMREV 126 >gi|325287669|ref|YP_004263459.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489] gi|324323123|gb|ADY30588.1| UvrD/REP helicase [Cellulophaga lytica DSM 7489] Length = 773 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 56/163 (34%), Gaps = 38/163 (23%) Query: 15 DLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + I+Q Q V A AGSGKT +L R+ L+ P +L LT T Sbjct: 3 EFIAQLNEAQKAPVLHTKGPLMVIAGAGSGKTRVLTYRIAYLIQQGVDPYNILSLTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ +I + S L + Sbjct: 63 AAREMKVRIADIAGSAETKS-------------------------------------LWM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ +++ + ++F I D + S++LI K Sbjct: 86 GTFHSIFAKLLRYEADKLGYPNNFTIYDTQDSQRLIASIIKEM 128 >gi|320334525|ref|YP_004171236.1| UvrD/REP helicase [Deinococcus maricopensis DSM 21211] gi|319755814|gb|ADV67571.1| UvrD/REP helicase [Deinococcus maricopensis DSM 21211] Length = 768 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 41/164 (25%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL++Q Q A+D T A V A AGSGKT LV R+ L+ + HP +L +T T Sbjct: 31 DLLAQLNPNQAQAADHHTGPALVIAGAGSGKTRTLVYRIAHLIQHYDVHPGEILAVTFTN 90 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R +++ L Sbjct: 91 KAAAEMRER---------------------------------------ASHLVQGANQLW 111 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ + + F I D++ ++++ + Sbjct: 112 MSTFHSAGVRILRAYGEYIGLKRGFVIYDDDDQLDILKDLIGNV 155 >gi|309379347|emb|CBX22120.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 735 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|78186341|ref|YP_374384.1| DNA helicase II [Chlorobium luteolum DSM 273] gi|78166243|gb|ABB23341.1| ATP-dependent DNA helicase PcrA [Chlorobium luteolum DSM 273] Length = 735 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 56/164 (34%), Gaps = 39/164 (23%) Query: 15 DLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 D + +Q S V A AGSGKT ++ R+ L+ +L LT T Sbjct: 3 DFLRDLSPVQQSAVSTTEGPVMVLAGAGSGKTRVITYRIAHLIGTKGVPSKNILALTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM HRV ++ + GL Sbjct: 63 KAAGEMRHRVDTLLGPGAS-------------------------------------SGLW 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ +++ + + F+I D + SK LI ++ Sbjct: 86 IGTFHSVFARLLRDYIERLGYSRSFSIFDSDDSKSLIRQSMTEL 129 >gi|295702475|ref|YP_003595550.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium DSM 319] gi|294800134|gb|ADF37200.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium DSM 319] Length = 749 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 67/210 (31%), Gaps = 58/210 (27%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L +Q + A AGSGKT +L R+ L+ P +L +T T A Sbjct: 17 LTGLNPQQQEAVKTTDGPLLLMAGAGSGKTRVLTHRIAFLMAEKEVAPWNILAITFTNKA 76 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV I+ + + + Sbjct: 77 AREMRERVSNIVGGVAE--------------------------------------DIWIS 98 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C I+++ +F I D S + +I+ D N + KK Sbjct: 99 TFHSMCVRILRRDIDRIGFNRNFTILDSTDQL--------SVIKNILKDQNIDPKKF--- 147 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFF 224 D +L+ I S + LK+ F Sbjct: 148 --------DPRSLLGSISSAKNELKVAEEF 169 >gi|254489019|ref|ZP_05102224.1| UvrD/REP helicase domain protein [Roseobacter sp. GAI101] gi|214045888|gb|EEB86526.1| UvrD/REP helicase domain protein [Roseobacter sp. GAI101] Length = 806 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 71/193 (36%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ + + D + A AG+GKT L R++ L+ A P+ +L +T T Sbjct: 27 YLDGLNPAQRAAVEQMD--GPVLMLAGAGTGKTKALTARIVHLMNTGRARPNEILAVTFT 84 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM +RV ++ G Sbjct: 85 NKAAREMKNRVGGMLGQSIE-------------------------------------GMP 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T HA C ++++ + S+F I D + +L+++ + + +D+ + Sbjct: 108 WLGTFHAICVKLLRRHAELVGLKSNFTILDTDDQLRLLKQ----LIKAEGIDDKRWPARM 163 Query: 192 FYEILEISNDEDI 204 I++ + + Sbjct: 164 LAGIIDGWKNRAL 176 >gi|326383701|ref|ZP_08205386.1| ATP-dependent DNA helicase PcrA [Gordonia neofelifaecis NRRL B-59395] gi|326197465|gb|EGD54654.1| ATP-dependent DNA helicase PcrA [Gordonia neofelifaecis NRRL B-59395] Length = 834 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 42/167 (25%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E +D ++ ++ + A AGSGKT +L +R+ LL + P +L +T Sbjct: 19 ELLDGLN--PQQRDAVLHTGSPLLIVAGAGSGKTAVLTRRIAFLLAERDVTPGQILAITF 76 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV++++ + Sbjct: 77 TNKAAAEMRERVIDLVGPRA--------------------------------------AY 98 Query: 131 LKVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T H+ C I++ Q L N S+F+I D + S++L+ + Sbjct: 99 MWVSTFHSTCVRILRAQSGLLGNRNSNFSIYDADDSRRLLGMVVRDL 145 >gi|309792836|ref|ZP_07687278.1| UvrD/REP helicase [Oscillochloris trichoides DG6] gi|308225148|gb|EFO78934.1| UvrD/REP helicase [Oscillochloris trichoides DG6] Length = 741 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 76/235 (32%), Gaps = 72/235 (30%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 + ++ + + A D V A GSGKT +L RV L+ A P +L +T Sbjct: 4 DLFTGLNPAQQRAVQAVD--GPVLVLAGPGSGKTRVLTHRVAYLIRALQVDPYQILAVTF 61 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R++ ++ E Sbjct: 62 TNKAAREMKQRLVHLVGE-------------------------------------EAAYA 84 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST------------LA 178 L V T H+ C +++ + F I D + ++L+ + LA Sbjct: 85 LTVGTFHSLCARFLRRDSVHLGRERDFVIYDGDDQERLMRRVVRELNLDEKKYAPRAMLA 144 Query: 179 SIMLDNNEELKKA--------------------FYEILEISNDEDIETLISDIIS 213 I NE + A + ++L SN D + L+ +++ Sbjct: 145 RISSAKNELVGPAEYARLNRTYLDEIVARCYERYQQLLRQSNALDFDDLLVEMVH 199 >gi|229821506|ref|YP_002883032.1| ATP-dependent DNA helicase PcrA [Beutenbergia cavernae DSM 12333] gi|229567419|gb|ACQ81270.1| ATP-dependent DNA helicase PcrA [Beutenbergia cavernae DSM 12333] Length = 829 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 45/194 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 ++ ++ + ++ S P + A AGSGKT +L R+ LL A P +L +T T Sbjct: 58 LLEGLNPHQRAAVVHSGP--PLLIIAGAGSGKTRVLTHRIAYLLATRRARPGEILAITFT 115 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM RV ++ + + Sbjct: 116 NKAAAEMRERVEALVGPPAR--------------------------------------AM 137 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H+ C I+++ + S F+I D S +L+ + + LD KA Sbjct: 138 WVSTFHSACVRILRREHAVLGLRSSFSIYDAADSLRLMTLVCR----ELGLDPKRYPPKA 193 Query: 192 FYEILEISNDEDIE 205 F + +E ++ Sbjct: 194 FIHRVSDLKNELVD 207 >gi|149013113|ref|ZP_01833959.1| exonuclease RexA [Streptococcus pneumoniae SP19-BS75] gi|147763058|gb|EDK70001.1| exonuclease RexA [Streptococcus pneumoniae SP19-BS75] Length = 1216 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L+E + + + + K+ F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + +S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223 >gi|118474774|ref|YP_891588.1| putative recombination protein RecB [Campylobacter fetus subsp. fetus 82-40] gi|118414000|gb|ABK82420.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter fetus subsp. fetus 82-40] Length = 921 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 3/127 (2%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 +R + A+AGSGKT L R + L+L + +L LT TK AA EM R+++ Sbjct: 4 SRYLALEASAGSGKTFALSVRFIALILQGNDIAKILALTFTKKAANEMKSRIIDAFCNLH 63 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 S + E+ KI + +++ + LK+ T +F I++QF L Sbjct: 64 ESSKKNELNELEKILELSAVDILSLRDKYMGNFL---KNELKISTFDSFFTMILRQFSLN 120 Query: 151 ANITSHF 157 I F Sbjct: 121 LGIMPDF 127 >gi|182684115|ref|YP_001835862.1| exonuclease RexA [Streptococcus pneumoniae CGSP14] gi|303255773|ref|ZP_07341815.1| exonuclease RexA [Streptococcus pneumoniae BS455] gi|251764565|sp|B2IPX3|ADDA_STRPS RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|182629449|gb|ACB90397.1| exonuclease RexA [Streptococcus pneumoniae CGSP14] gi|301801979|emb|CBW34707.1| putative ATP-dependent exonuclease subunit A [Streptococcus pneumoniae INV200] gi|302597285|gb|EFL64389.1| exonuclease RexA [Streptococcus pneumoniae BS455] Length = 1216 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 83/222 (37%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L+E + + + + K+ F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + KS Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSKSFL 223 >gi|229114675|ref|ZP_04244089.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock1-3] gi|228668740|gb|EEL24168.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock1-3] Length = 1195 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 76/189 (40%), Gaps = 35/189 (18%) Query: 52 VLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKK 108 +++ ++ +P LL +T T AAA EM +R+ E + K+ + Sbjct: 1 MIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGEAL---------------EKVLIDE 45 Query: 109 PNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 P + K LL + TIH+FC +++ + ++ F IA++ +++ L Sbjct: 46 PGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELL 98 Query: 169 IEEAKKSTLASIM-LDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 EE L +++N + +D+D++ +I L L ++ Sbjct: 99 KEEVLDDILEEEYGIEDNSIFFELVDRYTSDRSDDDLQRMI---------LALHTESRAH 149 Query: 228 LWRRKIIEK 236 K ++K Sbjct: 150 PNPEKWLDK 158 >gi|322387878|ref|ZP_08061485.1| exonuclease RexA [Streptococcus infantis ATCC 700779] gi|321141151|gb|EFX36649.1| exonuclease RexA [Streptococcus infantis ATCC 700779] Length = 1216 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 86/222 (38%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L L T T AA E+ Sbjct: 26 TAEQIQAIYSSGQNILVSASAGSGKTFVMAERILDQLARGVEIRQLFISTFTVKAATELK 85 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + KI + DM +HL + + P + T+ +F Sbjct: 86 ERLEK------------------KISQQIQETQDMELKKHLGRQLADLPNAA-IGTMDSF 126 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILEI 198 + + + ++ +F I + E + L++ + + + + ++ F +++ Sbjct: 127 TQKFLAKHGYLIDLAPNFRILENESEQLLLK---NDVFRQVFESHYQSKEQEQFSQLV-- 181 Query: 199 SNDEDIETLISDIISNRTALKLIF-FFFSYLWRRKIIEKSLW 239 ++ D R + +I+ F S + +++S Sbjct: 182 ---KNFAGKSKDARGLRKQVYMIYDFLQSTSNPQAWLQESFL 220 >gi|301794254|emb|CBW36675.1| putative ATP-dependent exonuclease subunit A [Streptococcus pneumoniae INV104] Length = 1216 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L+E + + + + K+ F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + +S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223 >gi|254819357|ref|ZP_05224358.1| ATP-dependent DNA helicase PcrA [Mycobacterium intracellulare ATCC 13950] Length = 780 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 46/216 (21%), Positives = 84/216 (38%), Gaps = 52/216 (24%) Query: 2 IYHNSFQEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-N 59 ++ + SE L+ +Q A S + A AGSGKT +L +R+ L+ A Sbjct: 3 VHATDTKLASEADQLLEGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLIAARG 62 Query: 60 AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119 +L +T T AAAEM RV+ ++ ++AR Sbjct: 63 VGVGQVLAITFTNKAAAEMRERVVRLVG---------------------------NRAR- 94 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKS--- 175 + V T H+ C I++ + S+F+I D + S++L++ + Sbjct: 95 ----------AMWVSTFHSTCVRILRNQASLIEGLNSNFSIYDADDSRRLLQMIGRDMGL 144 Query: 176 --------TLASIMLDNNEELKKAFYEILEISNDED 203 LA+ + + EL + ++++D D Sbjct: 145 DIKRYSPRLLANAISNLKNELIDPADAVSKLTDDSD 180 >gi|157163878|ref|YP_001466192.1| ribonucleoside-diphosphate reductase beta chain [Campylobacter concisus 13826] gi|112801470|gb|EAT98814.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter concisus 13826] Length = 939 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 10/180 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + L+L + + ++ LT TK AA EM R+ I + L Sbjct: 5 LALKASAGSGKTFALSVRYIALVLRGENINEIVALTFTKKAANEMKERI---IATFLDLQ 61 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 ++ E Q + + L L+ LK+ T AF I+++F I Sbjct: 62 NKKGELEAVCAQLNISQDEAIKRRDERLGVFLQ--SELKIYTFDAFFSGILKKFSQNLGI 119 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 +++ D L + A K + D + A I+ + ++ Sbjct: 120 NPDYSVQDS-----LQDLAWKKFVKEASKDKKLLSELALMMIISSQKEASFSQTLAKFYE 174 >gi|303260559|ref|ZP_07346525.1| exonuclease RexA [Streptococcus pneumoniae SP-BS293] gi|303262692|ref|ZP_07348631.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS292] gi|303265228|ref|ZP_07351139.1| exonuclease RexA [Streptococcus pneumoniae BS397] gi|303266991|ref|ZP_07352865.1| exonuclease RexA [Streptococcus pneumoniae BS457] gi|303269649|ref|ZP_07355407.1| exonuclease RexA [Streptococcus pneumoniae BS458] gi|302636124|gb|EFL66620.1| exonuclease RexA [Streptococcus pneumoniae SP14-BS292] gi|302638272|gb|EFL68741.1| exonuclease RexA [Streptococcus pneumoniae SP-BS293] gi|302640820|gb|EFL71209.1| exonuclease RexA [Streptococcus pneumoniae BS458] gi|302643471|gb|EFL73744.1| exonuclease RexA [Streptococcus pneumoniae BS457] gi|302645199|gb|EFL75435.1| exonuclease RexA [Streptococcus pneumoniae BS397] Length = 1216 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 83/222 (37%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L+E + + + + K+ F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + KS Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSKSFL 223 >gi|237736785|ref|ZP_04567266.1| ATP-dependent DNA helicase pcrA [Fusobacterium mortiferum ATCC 9817] gi|229420647|gb|EEO35694.1| ATP-dependent DNA helicase pcrA [Fusobacterium mortiferum ATCC 9817] Length = 726 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 59/166 (35%), Gaps = 41/166 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D ++ + E A+ + + A AGSGKT + R+ ++ P +L +T T Sbjct: 3 ILDKLNDKQRE--AAAKIEGALLILAGAGSGKTRTITYRIAHMIDEIGISPYKILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ + + Sbjct: 61 NKAAKEMKERVESLVGEDAK--------------------------------------RV 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 + T H+F +++ + ++F I D + K++ + K + Sbjct: 83 MISTFHSFGLRLLRVYGDRLGYNANFTIYDTDDQKRVAKNIMKDLV 128 >gi|306829519|ref|ZP_07462709.1| ATP-dependent nuclease subunit A [Streptococcus mitis ATCC 6249] gi|304428605|gb|EFM31695.1| ATP-dependent nuclease subunit A [Streptococcus mitis ATCC 6249] Length = 1217 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 78/223 (34%), Gaps = 31/223 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKIGQQIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLA-SIMLDNNEELKKAFYEILE 197 + + + +I +F I +E + L E +N E + Sbjct: 130 TQKFLGKHGYLIDIAPNFRILQNESEQLLLKNEVFHQVFEVHYQGENKENFSRLVKNFAG 189 Query: 198 ISNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 DE R + K+ F S +K + +S Sbjct: 190 RGKDER---------GLRQQVYKIYDFLQSTSSPQKWLNESFL 223 >gi|74317324|ref|YP_315064.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC 25259] gi|74056819|gb|AAZ97259.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC 25259] Length = 702 Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 61/168 (36%), Gaps = 36/168 (21%) Query: 16 LISQTKSEQLLASDPT-------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 +S+ EQ A + V A AGSGKT++L RV L+ A P+ +L L Sbjct: 20 YLSRLNPEQRRAVEHDVAGDACAGPLLVIAGAGSGKTNVLAHRVAHLVAHGADPAAILLL 79 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T ++ AA EM RV I+ + + A++ Sbjct: 80 TFSRRAADEMVRRVERILRQVAAGRPRLAGAKL--------------------------- 112 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ +++++ + F I D E S L+ + Sbjct: 113 --AWAGTFHSIGARLLREYAPRIGLDPAFTIHDREDSADLLNLVRHEL 158 >gi|319765417|ref|YP_004130918.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC52] gi|317110283|gb|ADU92775.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC52] Length = 724 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 53/161 (32%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L K +Q + A AGSGKT +L R+ L+ P +L +T T A Sbjct: 9 LAHLNKEQQEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ + + + Sbjct: 69 AREMKERVQALLGGAAE--------------------------------------DVWIS 90 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C ++++ I +F+I D +I+ K Sbjct: 91 TFHSMCVRMLRRDIDRIGINRNFSILDPTDQLSVIKAILKD 131 >gi|261418602|ref|YP_003252284.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC61] gi|261375059|gb|ACX77802.1| ATP-dependent DNA helicase PcrA [Geobacillus sp. Y412MC61] Length = 725 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 53/161 (32%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L K +Q + A AGSGKT +L R+ L+ P +L +T T A Sbjct: 10 LAHLNKEQQEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKA 69 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ + + + Sbjct: 70 AREMKERVQALLGGAAE--------------------------------------DVWIS 91 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C ++++ I +F+I D +I+ K Sbjct: 92 TFHSMCVRMLRRDIDRIGINRNFSILDPTDQLSVIKAILKD 132 >gi|116621025|ref|YP_823181.1| DNA helicase/exodeoxyribonuclease V subunit A [Candidatus Solibacter usitatus Ellin6076] gi|116224187|gb|ABJ82896.1| DNA helicase/exodeoxyribonuclease V, subunit A [Candidatus Solibacter usitatus Ellin6076] Length = 1045 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 78/185 (42%), Gaps = 35/185 (18%) Query: 23 EQLLASDPTR---SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 +QL A D + +A V A GSGKT +LV+ RL+ A+ P +L +T T+ AA M Sbjct: 9 DQLDAVDVEKRHLNACVVAGPGSGKTTVLVEYFRRLVEADVDPLRILAITFTEKAAGNMR 68 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 ++ + + +AR V T+H F Sbjct: 69 KKLGQAFQDQPQI-----------------------RAR---------LERAWVSTVHGF 96 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C ++++ + A + F + D +S ++ +EA ++ + S+ D+ E ++ + Sbjct: 97 CARLLRENAVFAGVDPEFRVLDATESWRMQQEAMRTAIDSLFADHLEGMRGLIRGLSSFE 156 Query: 200 NDEDI 204 ++ + Sbjct: 157 FEQAV 161 >gi|15826976|ref|NP_301239.1| putative ATP-dependent DNA helicase [Mycobacterium leprae TN] gi|221229454|ref|YP_002502870.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923] gi|13632801|sp|Q9CD72|PCRA_MYCLE RecName: Full=ATP-dependent DNA helicase pcrA gi|13092523|emb|CAC29661.1| putative ATP-dependent DNA helicase [Mycobacterium leprae] gi|219932561|emb|CAR70246.1| putative ATP-dependent DNA helicase [Mycobacterium leprae Br4923] Length = 778 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 47/217 (21%), Positives = 81/217 (37%), Gaps = 51/217 (23%) Query: 2 IYHNSFQEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-N 59 ++ + SE L+ +Q A S + A AGSGKT +L +R+ L+ A + Sbjct: 3 VHTTDAKPDSEVDRLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTTVLARRIAYLIAARS 62 Query: 60 AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119 S +L +T T AAAEM RV ++ Sbjct: 63 VGVSQILAITFTNKAAAEMRERVARLVGD------------------------------- 91 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKS--- 175 T + V T H+ C I++ + S+F+I D + S+ L++ + Sbjct: 92 ------HTGPSMWVSTFHSTCVRILRNQASLIGGLNSNFSIYDVDDSRSLLQMIGQDMGL 145 Query: 176 --------TLASIMLDNNEELKKAFYEILEISNDEDI 204 +A+ + + EL A + +S+D D Sbjct: 146 DIKRYSPRLMANAISNLKNELIDAESAVANLSSDTDD 182 >gi|227819648|ref|YP_002823619.1| DNA helicase [Sinorhizobium fredii NGR234] gi|227338647|gb|ACP22866.1| UvrD2 DNA helicase [Sinorhizobium fredii NGR234] Length = 688 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 55/169 (32%), Gaps = 37/169 (21%) Query: 16 LISQTKSEQLLAS--------DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 + + Q A D + A AGSGKT+ L RV L++ A P +L Sbjct: 5 YLEKLNERQRSAVEHGVASGVDSGGPLLIIAGAGSGKTNTLAHRVAHLIVNGADPRRILL 64 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T ++ AAAEM RV I + S + Sbjct: 65 MTFSRRAAAEMGRRVERICSQVLGAKAGSFSDAL-------------------------- 98 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H ++++ E I F I D E S L+ + Sbjct: 99 ---AWAGTFHGIGARLLREHATEIGIDPSFTIHDREDSADLMNIVRHEL 144 >gi|42524707|ref|NP_970087.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100] gi|39576917|emb|CAE78146.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100] Length = 762 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 37/169 (21%) Query: 11 SETIDLI--SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLC 67 + +D + + +++ + A AGSGKT +L R+ ++ +LC Sbjct: 1 MDVLDFVTKNLNPAQKDAVETLEGPLLILAGAGSGKTRVLTHRMANMIGQGVAASDEILC 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM HR+ +I++ + Sbjct: 61 VTFTNKAAKEMEHRIYKILSDMGAVVQT-------------------------------- 88 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L + T H+FC +++Q + F I D I++ + Sbjct: 89 --QLWISTFHSFCVRVLRQHITLLDYKPFFGIYDSSDQLSQIKKVMTAL 135 >gi|225010263|ref|ZP_03700735.1| UvrD/REP helicase [Flavobacteria bacterium MS024-3C] gi|225005742|gb|EEG43692.1| UvrD/REP helicase [Flavobacteria bacterium MS024-3C] Length = 1043 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 76/178 (42%), Gaps = 8/178 (4%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 +A+AGSGKT+ L + L+L+LA + + +L LT T A EM R+L + +S Sbjct: 14 LIYNASAGSGKTYTLTKVYLKLILAPNAHNNFGHILALTFTNKAVNEMKERILTGLADFS 73 Query: 91 HLSDEILSAEITKIQGKKPN---KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 S + K+ + K+ +L+ +L +V TI F +++ F Sbjct: 74 LTPCPKKSEALFSDVVKELGCSREVLQKKSEKVLMQLLHNYAFFEVSTIDKFNHRLIRTF 133 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 + + +F + + + ++ E + + D + + +IS D+ + Sbjct: 134 AKDLKLPQNFEV--QLDTDLVLTEGVNALIDRAGNDAALTDILVAFALEKISEDKSWD 189 >gi|326517054|dbj|BAJ96519.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 774 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 45/193 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 ++ E + ++ + E SD + A GSGKT +V RVL LL PS +L + Sbjct: 299 KYYEYLHSLNDKQREA-SCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEGISPSNILAM 357 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AAA+EM R+ ++ A+ ++ Sbjct: 358 TFTTAAASEMRDRIGAVVGKAV--------------------------AKEII------- 384 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK-------STLASIM 181 + T H+FC + + + TS F I Q ++ I EA++ L + Sbjct: 385 ----ISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIVEAERLLEHGKSDGLGDAV 440 Query: 182 LDNNEELKKAFYE 194 + ++K +F + Sbjct: 441 KQCDGDIKNSFKD 453 >gi|317125678|ref|YP_004099790.1| UvrD/REP helicase [Intrasporangium calvum DSM 43043] gi|315589766|gb|ADU49063.1| UvrD/REP helicase [Intrasporangium calvum DSM 43043] Length = 1186 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 68/171 (39%), Gaps = 20/171 (11%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 S + + +DL T + + R V A AGSGKT + RV+ L+ P Sbjct: 18 SALDIARALDLPPPTDEQAAVVEAGPRPLLVVAGAGSGKTETMAARVVWLVANGLVAPDQ 77 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L LT T+ AAAE+S R+ + + + + P + D A L Sbjct: 78 VLGLTFTRKAAAELSQRIAKRLRG------------LVRAGVWSPPEDDGGGAEVLG--- 122 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G V T H++ ++++ L I F + E + +L EA Sbjct: 123 ----GTPTVSTYHSYAGRLVREHALRLGIEPEFRVLTEAGAWQLAAEAVSR 169 >gi|119356509|ref|YP_911153.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeobacteroides DSM 266] gi|119353858|gb|ABL64729.1| ATP-dependent DNA helicase PcrA [Chlorobium phaeobacteroides DSM 266] Length = 734 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 60/161 (37%), Gaps = 40/161 (24%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 ++ + + + A++ V A AGSGKT ++ R+ L+ A +L LT T AA Sbjct: 8 LNDVQRQAVRATE--GPVMVLAGAGSGKTRVITYRIAWLIKNGYASAKNILALTFTNKAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM HRV ++ S GGL + T Sbjct: 66 GEMRHRVDVLLQQGS-------------------------------------AGGLWIGT 88 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ +++ +F+I D + SK LI ++ Sbjct: 89 FHSIFARLLRNDIHLLGYDRNFSIFDADDSKSLIRQSMGEL 129 >gi|86143639|ref|ZP_01062015.1| putative helicase [Leeuwenhoekiella blandensis MED217] gi|85829682|gb|EAQ48144.1| putative helicase [Leeuwenhoekiella blandensis MED217] Length = 1047 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 8/175 (4%) Query: 37 SANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKAAAAEMSHRVLEIITAWSH-- 91 +A+AG+GKT LV+ L +L +++ +L +T T A AEM R+++ + +S Sbjct: 11 NASAGAGKTFALVKNYLSILFKSSNDFKYRRILAITFTNKAVAEMKTRIIKNLQDFSSDA 70 Query: 92 -LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + + + + +KA+ +L I++ V TI F I++ F + Sbjct: 71 IFTQDNPMLSAVEEETGLERSEIQNKAKRILKHIVQDYASFDVVTIDNFTHRIIRTFAYD 130 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 I +F + E ++ ++E+A S + D N Y + +I ND+ + Sbjct: 131 LKIPQNFEV--ELNTQDVLEQAVDSLIDKAGKDQNITRVLLDYALEKIDNDKSWD 183 >gi|242241668|ref|ZP_04796113.1| possible ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis W23144] gi|242234878|gb|EES37189.1| possible ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis W23144] Length = 295 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 55/159 (34%), Gaps = 39/159 (24%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76 + + + A AGSGKT +L R+ LL + P +L +T T AA Sbjct: 7 NMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV ++ + + + + T Sbjct: 67 EMKTRVEHLVGEEAQV--------------------------------------IWMSTF 88 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 H+ C I+++ I +F I D K +I++ KS Sbjct: 89 HSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKS 127 >gi|116253019|ref|YP_768857.1| ATP-dependent DNA helicase [Rhizobium leguminosarum bv. viciae 3841] gi|115257667|emb|CAK08764.1| putative ATP-dependent DNA helicase [Rhizobium leguminosarum bv. viciae 3841] Length = 829 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 43/192 (22%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D ++ EQ A + V A AG+GKT +L R+ +L A PS +L +T T Sbjct: 57 DYLAGLNPEQTEAVETLEGPVLVLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTN 116 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ G Sbjct: 117 KAAREMKERIALLVGGAVE-------------------------------------GMPW 139 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ ++++ + S F I D + +LI++ + + LD+ K F Sbjct: 140 LGTFHSIGVKLLRRHGELVGLRSDFTILDTDDVVRLIKQ----IIQAEGLDDKRWPAKQF 195 Query: 193 YEILEISNDEDI 204 +++ ++ + Sbjct: 196 AGMIDTWKNKGL 207 >gi|42525604|ref|NP_970702.1| ATP-dependent DNA helicase UvrD [Treponema denticola ATCC 35405] gi|41815615|gb|AAS10583.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema denticola ATCC 35405] Length = 1139 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 40/225 (17%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 +++ Q A +++ ++A AGSGKT +L R + ++ ++ LT T+ Sbjct: 7 NIMDSLNENQKNAVSVEKNSVIAAGAGSGKTKVLAARYVYFVVEKGVSVEKIIALTFTEK 66 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ + H + + +E K+ Sbjct: 67 AAAEMHKRIYNELKKIDHPNAK---------------------------NAIEKFHLAKI 99 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TI +FC I + I+ F I D +S+KL + D + Sbjct: 100 STIDSFCNRIARDACRNLGISPDFNI-DNTESEKLAYRIGLDFFLKMRSDKTMQF----- 153 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 D I+ +S + L + +K +E + Sbjct: 154 ----FLGDNGIDDFVSGLFVK--LLSNYVLISRPIDFKKSLEDQI 192 >gi|91217344|ref|ZP_01254304.1| ATP-dependent DNA helicase [Psychroflexus torquis ATCC 700755] gi|91184452|gb|EAS70835.1| ATP-dependent DNA helicase [Psychroflexus torquis ATCC 700755] Length = 772 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 56/162 (34%), Gaps = 39/162 (24%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 D I Q Q A V A AGSGKT +L R+ L+ +L LT T Sbjct: 3 DYIKQLNEAQREAVLQKDGPMIVIAGAGSGKTRVLTYRIAYLMSEGVDSFNILALTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM +R+ +I+ A + L + Sbjct: 63 AAKEMKNRISKIVGAEAK--------------------------------------NLWM 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ I++ + S+F I D S++LI K Sbjct: 85 GTFHSVFAKILRFEGGKLGFPSNFTIYDSNDSQQLIRSIIKE 126 >gi|291166490|gb|EFE28536.1| ATP-dependent DNA helicase PcrA [Filifactor alocis ATCC 35896] Length = 725 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 57/161 (35%), Gaps = 39/161 (24%) Query: 17 ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 I++ EQL A + + A AGSGKT ++ R+ L+ PS +L LT T AA Sbjct: 3 IAELNKEQLDAVQTAGGNMLILAGAGSGKTRVITYRIAYLINHGVSPSNILALTFTNKAA 62 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ I++ E + T Sbjct: 63 NEMKDRLSSILS--------------------------------------EEFSPSWIGT 84 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ C I++ + N F I D +I++ K Sbjct: 85 FHSICLRILRMNIEKVNYKKEFVIYDTYDQTAIIKDCMKQL 125 >gi|254517672|ref|ZP_05129728.1| UvrD/REP helicase [Clostridium sp. 7_2_43FAA] gi|226911421|gb|EEH96622.1| UvrD/REP helicase [Clostridium sp. 7_2_43FAA] Length = 749 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 58/165 (35%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL S EQ A+ + A AGSGKT +L R+ ++ P +L +T T Sbjct: 11 MDLKSLLNKEQYEGATTIEGQVLILAGAGSGKTRVLTHRMAHMIDDLGILPYKILAITFT 70 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +I + + Sbjct: 71 NKAAKEMKDRVKALIGERAE--------------------------------------DM 92 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ + F I D K LI+E K+ Sbjct: 93 WISTFHSTCVRILRREIEKLGYKKSFTIYDTSDQKTLIKECMKAL 137 >gi|87302003|ref|ZP_01084837.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 5701] gi|87283571|gb|EAQ75526.1| ATP-dependent DNA helicase PcrA [Synechococcus sp. WH 5701] Length = 797 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 17/172 (9%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 + ++ Q A D V A AGSGKT L R+ L+ P LL +T T Sbjct: 1 MSFLAGLNDAQRRAVDHHNGPLLVVAGAGSGKTRALTHRIAHLIGHHGVDPHQLLAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ S + Q ++ ++ + + E L Sbjct: 61 NKAAREMKERLELLLAQRLAGSQFGQPFSTLQPQQQRQLRNRIYR---------EVTKEL 111 Query: 132 KVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTL 177 + T HA +++ ++ + T F+I DE ++ L++E L Sbjct: 112 WIGTFHALFARLLRFDIDKYKDPEGLTWTRQFSIYDESDAQTLVKEIVTQEL 163 >gi|294497110|ref|YP_003560810.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium QM B1551] gi|294347047|gb|ADE67376.1| ATP-dependent DNA helicase PcrA [Bacillus megaterium QM B1551] Length = 741 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 67/210 (31%), Gaps = 58/210 (27%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L +Q + A AGSGKT +L R+ L+ P +L +T T A Sbjct: 9 LTGLNPQQQEAVKTTDGPLLLMAGAGSGKTRVLTHRIAFLMAEKEVAPWNILAITFTNKA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV I+ + + + Sbjct: 69 AREMRERVASIVGGVAE--------------------------------------DIWIS 90 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C I+++ +F I D S + +I+ D N + KK Sbjct: 91 TFHSMCVRILRRDIDRIGFNRNFTILDSTDQL--------SVIKNILKDQNIDPKKF--- 139 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFF 224 D +L+ I S + LK+ F Sbjct: 140 --------DPRSLLGSISSAKNELKVAEEF 161 >gi|253575957|ref|ZP_04853291.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. oral taxon 786 str. D14] gi|251844751|gb|EES72765.1| ATP-dependent DNA helicase PcrA [Paenibacillus sp. oral taxon 786 str. D14] Length = 661 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 59/165 (35%), Gaps = 40/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 E + ++ + + + A++ + A AGSGKT +L R+ L+ A P +L +T Sbjct: 14 EAVSRLNPQQRQAVEATE--GPLLIMAGAGSGKTRVLTHRIAYLIATRKAPPWAILAITF 71 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV ++ Sbjct: 72 TNKAAREMQDRVSRLVGGPEGRD------------------------------------- 94 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + V T H+ C I+++ TS+F+I D +I K Sbjct: 95 IWVSTFHSMCVRILRRDIERIGFTSNFSILDSTDQLSVIRNCMKE 139 >gi|327332323|gb|EGE74059.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL097PA1] Length = 810 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 40/163 (24%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL+ Q A V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 40 DLLVDLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGDRGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV++++ + + Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V T H+ I++ I+ +F+I D+ +K+LI + Sbjct: 122 VSTFHSAAVRILRTDIDGLGISRNFSIYDDTDAKRLITLVARD 164 >gi|323140468|ref|ZP_08075396.1| ATP-dependent DNA helicase PcrA [Phascolarctobacterium sp. YIT 12067] gi|322415036|gb|EFY05827.1| ATP-dependent DNA helicase PcrA [Phascolarctobacterium sp. YIT 12067] Length = 741 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 72/205 (35%), Gaps = 53/205 (25%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 D + EQL A + A AGSGKT +L R+ LL P +L +T T Sbjct: 3 DTMQGLNKEQLDAVQTINGPMLILAGAGSGKTKVLTCRIAHLLQQGVRPYRILAITFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM RV + A + + + Sbjct: 63 AAAEMRERVDRMAGAAAR--------------------------------------DVWL 84 Query: 134 QTIHAFCEAIMQQFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 T HAFC +++ E ++FAI D SK LI++ K N +E + Sbjct: 85 FTFHAFCARLLR---YELENLNGYANNFAIYDTSDSKNLIKQVMKEM-------NLDEKR 134 Query: 190 KAFYEILEISNDEDIETLISDIISN 214 I+ ++ L+ D + Sbjct: 135 FPLPAIISHISNAKNALLLPDAYAR 159 >gi|312132140|ref|YP_003999480.1| uvrd/rep helicase [Leadbetterella byssophila DSM 17132] gi|311908686|gb|ADQ19127.1| UvrD/REP helicase [Leadbetterella byssophila DSM 17132] Length = 1028 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 83/183 (45%), Gaps = 10/183 (5%) Query: 37 SANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 S++AGSGKT L + + +L + + +L +T T AA +M R++ + ++ Sbjct: 11 SSSAGSGKTFTLTREYISTVLAAQEDDYFKRILAMTFTNEAAEQMKERIISTLKGLANQD 70 Query: 94 DEILSAEITKIQGKKPNKSDMSK-ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + + + D+++ +R +L IL+ ++TI +F ++Q F ++ Sbjct: 71 GAAEAYKEQIQDATGLSDEDLARKSRKVLHEILQNYNDFAIKTIDSFVNQVIQSFAIDLK 130 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE--ISNDEDIETLISD 210 + ++ I + + LIEEA + D EEL + + E + N+ L + Sbjct: 131 LPYNYEIVLDTNT--LIEEAVNRLTDKVGQD--EELTLLYSDFAEGILENEGSWNNLREE 186 Query: 211 IIS 213 II Sbjct: 187 IIK 189 >gi|88802827|ref|ZP_01118354.1| ATP-dependent DNA helicase [Polaribacter irgensii 23-P] gi|88781685|gb|EAR12863.1| ATP-dependent DNA helicase [Polaribacter irgensii 23-P] Length = 773 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 58/167 (34%), Gaps = 39/167 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 + +D ++ + + +L D + A AGSGKT +L R+ L+ +L LT Sbjct: 1 MNSYLDSLNDAQKQAVLQKD--GPMIIIAGAGSGKTRVLTYRIAHLMKQGVDSFNILSLT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ ++ + Sbjct: 59 FTNKAAKEMKKRIASVVGDGEAKN------------------------------------ 82 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L + T H+ I++ + S+F I D + S +LI K Sbjct: 83 -LWMGTFHSVFARILRSEADKLGFPSNFTIYDTQDSVRLISAIIKEM 128 >gi|261400922|ref|ZP_05987047.1| DNA helicase II [Neisseria lactamica ATCC 23970] gi|269209154|gb|EEZ75609.1| DNA helicase II [Neisseria lactamica ATCC 23970] Length = 735 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|322375244|ref|ZP_08049757.1| exonuclease RexA [Streptococcus sp. C300] gi|321279507|gb|EFX56547.1| exonuclease RexA [Streptococcus sp. C300] Length = 562 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 80/223 (35%), Gaps = 31/223 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISQQIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIML-DNNEELKKAFYEILE 197 + + + +I +F I +E + L E +N E+ + Sbjct: 130 TQKFLGKHGYLIDIAPNFRILQNESEQLLLKNEVFHQVFEDHYQGENKEKFSRLVKNFAG 189 Query: 198 ISNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 DE R + K+ F S +K + +S Sbjct: 190 RGKDER---------GLRQQVYKIYDFLQSTSSPQKWLNESFL 223 >gi|255066057|ref|ZP_05317912.1| DNA helicase II [Neisseria sicca ATCC 29256] gi|255049602|gb|EET45066.1| DNA helicase II [Neisseria sicca ATCC 29256] Length = 736 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPI--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSSDQLSLIKRLLKSL 134 >gi|148995044|ref|ZP_01823987.1| exonuclease RexA [Streptococcus pneumoniae SP9-BS68] gi|168488979|ref|ZP_02713178.1| recombination helicase AddA [Streptococcus pneumoniae SP195] gi|147926887|gb|EDK77936.1| exonuclease RexA [Streptococcus pneumoniae SP9-BS68] gi|183572407|gb|EDT92935.1| recombination helicase AddA [Streptococcus pneumoniae SP195] gi|332073494|gb|EGI83973.1| recombination helicase AddA [Streptococcus pneumoniae GA17570] Length = 1216 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 84/222 (37%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVDLKQHLGCQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L+E + + + + K++F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKESFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + +S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223 >gi|330427927|gb|AEC19261.1| DNA helicase II [Pusillimonas sp. T7-7] Length = 761 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 78/224 (34%), Gaps = 46/224 (20%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 ID ++ +Q + P A V A AGSGKT +L R+ L+ + A P L+ +T T Sbjct: 1 MIDSLN--PQQQAAVTLPPAHALVLAGAGSGKTRVLTTRMAWLIQTSQASPFGLMAVTFT 58 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 +A EM R+ ++ G+ Sbjct: 59 NKSAREMLTRLSALLPI--------------------------------------NTRGM 80 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H C +++ +A + F I D + K L +D+ + + Sbjct: 81 WVGTFHGLCNRLLRAHHRDAGLPQTFQILDSADQLA----SIKRLLKGAGIDDEKFPPRD 136 Query: 192 FYEILEISNDEDIETLISDII-SNRTALKLIFFFFSYLWRRKII 234 + + ++ +I ++R L I+ + R+ + Sbjct: 137 VQRFINGAKEDGQRPADVEIYDAHRRRLVDIYQLYQDQCEREGV 180 >gi|254670947|emb|CBA07597.1| DNA helicase II [Neisseria meningitidis alpha153] Length = 735 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|325954156|ref|YP_004237816.1| UvrD/REP helicase [Weeksella virosa DSM 16922] gi|323436774|gb|ADX67238.1| UvrD/REP helicase [Weeksella virosa DSM 16922] Length = 1033 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 8/173 (4%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 +A+AG+GKT+ LV+ +L +LL N+ +L +T T AA EM R+L + + Sbjct: 9 LYNASAGAGKTYTLVRNLLIILLQNSRDNWFEYILAITFTNKAANEMKERILLNLKELAD 68 Query: 92 LSDEILSA-EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + + + K KA +L +IL + TI F +++ F + Sbjct: 69 PTKKQNDYIQGIAKDTKLSIDEIQQKAHRILTSILHNYSKFSISTIDKFNLRLIKSFAQD 128 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ F + E K LIEEA + I D EEL ++ ++ + +ED Sbjct: 129 LGLSMSFDV--EMDVKTLIEEAVNLVYSKIGKD--EELTESILDMSLSNMEED 177 >gi|288802442|ref|ZP_06407881.1| putative UvrD/REP helicase domain protein [Prevotella melaninogenica D18] gi|288334970|gb|EFC73406.1| putative UvrD/REP helicase domain protein [Prevotella melaninogenica D18] Length = 1099 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 75/168 (44%), Gaps = 6/168 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95 A+AGSGKT L + L++ N +L +T T A EM R+L + +H L D Sbjct: 10 ASAGSGKTFTLASEYITLVVKNPQDYKKILAVTFTNKATQEMKTRILSQLYGIAHKLPDS 69 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 E + P + A L + +VQTI AF +++++ E N+T+ Sbjct: 70 QAYYEQVLRKTGFPELTIRENAAEALSLLTHHYNEFRVQTIDAFFQSVLRNLARELNLTA 129 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + I ++ + +A + S+ + EE+ + ++ + ++D Sbjct: 130 NLRIDLNDEQVE--AQAVDELINSL--EEGEEVLTWIRDYIDKNIEDD 173 >gi|229101824|ref|ZP_04232539.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-28] gi|228681617|gb|EEL35779.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus cereus Rock3-28] Length = 1195 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 76/189 (40%), Gaps = 35/189 (18%) Query: 52 VLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKK 108 +++ ++ +P LL +T T AAA EM +R+ E + K+ + Sbjct: 1 MIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRIGEAL---------------EKVLIDE 45 Query: 109 PNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 P + K LL + TIH+FC +++ + ++ F IA++ +++ L Sbjct: 46 PGSQHVRKQLSLL-------NKASISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELL 98 Query: 169 IEEAKKSTLASIM-LDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 EE L +++N + +D+D++ +I L L ++ Sbjct: 99 KEEVLDDILEEEYGIEDNSIFFELVDRYTSDRSDDDLQRMI---------LALHTESRAH 149 Query: 228 LWRRKIIEK 236 K ++K Sbjct: 150 PNPEKWLDK 158 >gi|261379427|ref|ZP_05984000.1| DNA helicase II [Neisseria subflava NJ9703] gi|284797877|gb|EFC53224.1| DNA helicase II [Neisseria subflava NJ9703] Length = 735 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|325143147|gb|EGC65493.1| DNA helicase II [Neisseria meningitidis 961-5945] gi|325197521|gb|ADY92977.1| DNA helicase II [Neisseria meningitidis G2136] Length = 735 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|320527942|ref|ZP_08029108.1| putative ATP-dependent DNA helicase PcrA [Solobacterium moorei F0204] gi|320131568|gb|EFW24132.1| putative ATP-dependent DNA helicase PcrA [Solobacterium moorei F0204] Length = 743 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 39/163 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71 ID+ S ++++ + + A AGSGKT +L R++ L+ + P+ +L +T T Sbjct: 19 MIDINSLNENQKDAVLSKEKYLRIIAGAGSGKTRVLTMRIVHLIEDEDVWPTKILAITFT 78 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ + + Sbjct: 79 NKAANEMKERVRNMLASQTSAP-------------------------------------- 100 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 V TIH+ C I+++ + +F I D E K +++EA K Sbjct: 101 WVSTIHSLCVRILREDIIAMGYPRNFTIMDTEDQKSVLKEAYK 143 >gi|56418810|ref|YP_146128.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426] gi|56378652|dbj|BAD74560.1| ATP-dependent DNA helicase [Geobacillus kaustophilus HTA426] Length = 724 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 53/161 (32%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L K +Q + A AGSGKT +L R+ L+ P +L +T T A Sbjct: 9 LAHLNKEQQEAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKQVAPWNILAITFTNKA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ + + + Sbjct: 69 AREMKERVQALLGGAAE--------------------------------------DVWIS 90 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C ++++ I +F+I D +I+ K Sbjct: 91 TFHSMCVRMLRRDIDRIGINRNFSILDPTDQLSVIKAILKD 131 >gi|325294300|ref|YP_004280814.1| UvrD/REP helicase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064748|gb|ADY72755.1| UvrD/REP helicase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 705 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 85/245 (34%), Gaps = 71/245 (28%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 L+ +Q A + A AGSGKT ++ ++ ++ P +L +T T Sbjct: 4 LLKGLNPQQKKAVTYFDSPLLILAGAGSGKTRVITYKIAYMIEKLRYKPERILAVTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ + + V Sbjct: 64 AAKEMKERVEKLVGNSAPVL---------------------------------------V 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI-- 180 T H+FC +++ + +F I D + K+L+ E + +AS+ Sbjct: 85 STFHSFCVRLLRTHSVRVGYQPNFLILDTDDKKRLVREIIRDMNLDSELYNPSAIASVIS 144 Query: 181 --------------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALKLIFF 223 D +++ + + + L+ +N D + L+ +++ + + Sbjct: 145 NIKNGLYSPESMTTYYDRIKDIFEIYNKRLKENNAFDFDDLLIYGRELLKSEELQRKYSD 204 Query: 224 FFSYL 228 FF Y+ Sbjct: 205 FFQYV 209 >gi|322376656|ref|ZP_08051149.1| ATP-dependent nuclease subunit A [Streptococcus sp. M334] gi|321282463|gb|EFX59470.1| ATP-dependent nuclease subunit A [Streptococcus sp. M334] Length = 1216 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 83/222 (37%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + KI + +D+ +HL + + P + T+ +F Sbjct: 89 ERLEK------------------KISQQIQETNDVELKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L++ + + + + K+ F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLK---NEVFHEVFEAHYQGKQKETFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + +S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223 >gi|255262981|ref|ZP_05342323.1| DNA helicase II [Thalassiobium sp. R2A62] gi|255105316|gb|EET47990.1| DNA helicase II [Thalassiobium sp. R2A62] Length = 797 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 72/195 (36%), Gaps = 44/195 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 + ++ ++ + E + A + A AG+GKT L R++ L+ A P+ +L +T Sbjct: 27 APYLNDLNPAQREAVEAL--KGPVLMLAGAGTGKTKALTSRIVHLMSTGNARPNEILAVT 84 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV ++ G Sbjct: 85 FTNKAAREMKIRVGRMLGETVE-------------------------------------G 107 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + T HA C ++++ + S+F I D + +L+++ +A+ +D+ Sbjct: 108 MPWLGTFHAICVKLLRRHAELVGLKSNFTILDTDDQLRLLKQ----LVAAENIDDKRWPA 163 Query: 190 KAFYEILEISNDEDI 204 + I++ + Sbjct: 164 RMLAGIIDSWKNRAW 178 >gi|306825212|ref|ZP_07458554.1| ATP-dependent nuclease subunit A [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432648|gb|EFM35622.1| ATP-dependent nuclease subunit A [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 1217 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 81/222 (36%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TTEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + KI + +D+ +HL + + P + T+ +F Sbjct: 89 ERLEK------------------KISQQIQETNDVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-E 197 + + + +I +F I +E + L E + N+E F ++ Sbjct: 130 TQKFLGKHGYLIDIAPNFRILQNESEQLILKNEVFHQVFEAHYQGENKE---NFSRLVKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + +S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSSPQKWLNESFL 223 >gi|317495222|ref|ZP_07953592.1| ATP-dependent DNA helicase PcrA [Gemella moribillum M424] gi|316914644|gb|EFV36120.1| ATP-dependent DNA helicase PcrA [Gemella moribillum M424] Length = 728 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++L+ QL A + V A AGSGKT +L R+ L+ N S +L +T T Sbjct: 1 MELVQNMNENQLKAILKTQGAVMVIAGAGSGKTRVLTNRIAYLIAEKNVLESNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ ET + Sbjct: 61 NKAAKEMKERIYSLVG--------------------------------------ETSKYI 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I++Q +F I D + K +I+ K Sbjct: 83 WINTFHSMCVRILRQHIDLLGYNKNFTILDISEQKTIIKNIVKEL 127 >gi|297544110|ref|YP_003676412.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841885|gb|ADH60401.1| ATP-dependent DNA helicase PcrA [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 711 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 55/162 (33%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L + ++ + A AGSGKT +L R+ L+ PS +L +T T A Sbjct: 5 LNNLNDKQKEAVMTTEGPLLILAGAGSGKTRVLTHRIAYLIKEKKISPSNILAITFTNKA 64 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV E++ G L V Sbjct: 65 AEEMKTRVEELLGYI---------------------------------------GDLWVS 85 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I+++ + +F I D K LI+E K Sbjct: 86 TFHSASVRILRRDIDKIGYDRNFVIFDTTDQKALIQECLKEL 127 >gi|254412445|ref|ZP_05026219.1| UvrD/REP helicase subfamily [Microcoleus chthonoplastes PCC 7420] gi|196180755|gb|EDX75745.1| UvrD/REP helicase subfamily [Microcoleus chthonoplastes PCC 7420] Length = 1139 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 67/178 (37%), Gaps = 17/178 (9%) Query: 8 QEHSETIDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 +++ D ++ Q A + V A AGSGKT L R+ L+L + P + Sbjct: 4 LAMTQSTDFLTHLNPSQRRAVEHFCGPLLVVAGAGSGKTRALTYRIANLILTHKVAPENI 63 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T AA EM R+ + + E+ + S+ I Sbjct: 64 LAVTFTNKAAREMKSRIETLFAQQLAVQTRGQRLEL---LPELEQTQLRSRVYKKYIK-- 118 Query: 126 ETPGGLKVQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTL 177 L + T H+ I++ ++ E +F+I DE ++ L++ L Sbjct: 119 ----PLWIGTFHSLFARILRYDINKYTDEKGRQWKRNFSIFDESDAQTLVKTIVTKQL 172 >gi|325690487|gb|EGD32490.1| exonuclease RexA [Streptococcus sanguinis SK115] Length = 1224 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 79/222 (35%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++VQR++ +L L T T AA E+ Sbjct: 29 TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVRQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R + K G+ ++ + + L L + T+ AF Sbjct: 89 ER-------------------LEKELGQALKEAKSPELKQHLAQQLADLPNADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + + ++ + +F I + L E ++ L F +++ Sbjct: 130 TQKVFSRYGYLLGLAPNFRILQSASEQLILQNEVFSQVFDCYYASEHQAL---FSRLVKN 186 Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 + D+ R + ++ F S ++ +E++ Sbjct: 187 FTGKR-----KDLSGFREQVYRIYSFLQSTSSPQRWLEETFL 223 >gi|307244600|ref|ZP_07526704.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus stomatis DSM 17678] gi|306491981|gb|EFM64030.1| putative ATP-dependent DNA helicase PcrA [Peptostreptococcus stomatis DSM 17678] Length = 787 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 45/190 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 ID ++ + + + ++ + A AGSGKT +L R+ L+ P+ +L +T T Sbjct: 3 IDDLNPAQRQAVERTE--GPVLILAGAGSGKTKVLTTRIAYLVEDKQVMPANILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV II E + Sbjct: 61 KAANEMRERVENIIG--------------------------------------ENSRDMW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ C I+++ + F I D L+++ L + LD+ + K+ Sbjct: 83 ISTFHSCCVRILRKDINKIGYNRSFVIYDASDQLTLVKDC----LKELNLDDKKFEPKSI 138 Query: 193 YEILEISNDE 202 + + D+ Sbjct: 139 ISYISSAKDK 148 >gi|302392793|ref|YP_003828613.1| ATP-dependent DNA helicase PcrA [Acetohalobium arabaticum DSM 5501] gi|302204870|gb|ADL13548.1| ATP-dependent DNA helicase PcrA [Acetohalobium arabaticum DSM 5501] Length = 707 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 41/169 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 E +D ++ ++ V A AGSGKT +L R+ L+ N P LL +T Sbjct: 1 MEILDGLN--PQQKKAVKHKDGPLLVLAGAGSGKTMVLTHRIAYLIQQCNVEPYNLLAVT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ ++I S Sbjct: 59 FTNKAAEEMRERIEKLIAQDSE-------------------------------------- 80 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 + + T H+ I+++ + +F I D + LI++ K+ L Sbjct: 81 DIWMSTFHSIAVRILRREINKLGYDRNFTIYDTTDQQALIKDIIKNQLD 129 >gi|209550144|ref|YP_002282061.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535900|gb|ACI55835.1| UvrD/REP helicase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 825 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 43/192 (22%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D ++ EQ A + V A AG+GKT +L R+ +L A PS +L +T T Sbjct: 53 DYLAGLNPEQTEAVETLEGPVLVLAGAGTGKTRVLTTRIAHILNTGRAFPSQILAVTFTN 112 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ G Sbjct: 113 KAAREMKERIALLVGGAVE-------------------------------------GMPW 135 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ ++++ + S F I D + +LI++ + + LD+ K F Sbjct: 136 LGTFHSIGVKLLRRHGELVGLRSDFTILDTDDVVRLIKQ----LIQAEGLDDKRWPAKQF 191 Query: 193 YEILEISNDEDI 204 +++ ++ + Sbjct: 192 AGMIDTWKNKGL 203 >gi|307706581|ref|ZP_07643388.1| recombination helicase AddA [Streptococcus mitis SK321] gi|307618036|gb|EFN97196.1| recombination helicase AddA [Streptococcus mitis SK321] Length = 1216 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 75/221 (33%), Gaps = 27/221 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D + + + L L + T+ +F Sbjct: 89 ERLEKKISQQIQETDGV-------------------ELKQHLGRQLADLPNAAIGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + + + +I +F I ++ + L E + +E + Sbjct: 130 TQKFLGKHGYLIDIAPNFRILQNQSEQLLLKNEVFHEVFEAHYQGKQKETFSHL--LKNF 187 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + +S Sbjct: 188 AGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223 >gi|298369602|ref|ZP_06980919.1| DNA helicase II [Neisseria sp. oral taxon 014 str. F0314] gi|298282159|gb|EFI23647.1| DNA helicase II [Neisseria sp. oral taxon 014 str. F0314] Length = 735 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPI--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|254510735|ref|ZP_05122802.1| UvrD/REP helicase domain protein [Rhodobacteraceae bacterium KLH11] gi|221534446|gb|EEE37434.1| UvrD/REP helicase domain protein [Rhodobacteraceae bacterium KLH11] Length = 837 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 ++ Q A + + A AG+GKT L R+ LL ++ + +L +T T Sbjct: 27 YLNDLNPAQREAVERLEGPVLMLAGAGTGKTKALTARITHLLRSHRVRENEILAVTFTNK 86 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++ + G + Sbjct: 87 AAREMKERVGRMLGRPAE-------------------------------------GMPWL 109 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T HA C ++++ + S+F I D + K+L+++ + + +D+ + Sbjct: 110 GTFHAICVKLLRRHAELVGLKSNFTILDTDDQKRLLKQLTQ----AANIDDKRWPARMLA 165 Query: 194 EILEISNDEDI 204 I++ + + Sbjct: 166 GIIDDWKNRAL 176 >gi|327482104|gb|AEA85414.1| exodeoxyribonuclease V beta chain [Pseudomonas stutzeri DSM 4166] Length = 1227 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 79/198 (39%), Gaps = 17/198 (8%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT + +RL+L + P +L +T T AA E+ R+ Sbjct: 15 GSRLIEASAGTGKTFTIALLYVRLVLGHGGDAAFKQALTPPQILVVTFTDAATQELRDRI 74 Query: 83 LEIITAWS---HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + + DE + K++ P + AR L + E V TIH + Sbjct: 75 RARLNEAAQCFQAPDERHDPLLVKLRNGYPADQWPACARRLQL-ASEWMDEAAVSTIHGW 133 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C ++++ ++ S F E ++L++E + E+ + + Sbjct: 134 CYRMLREHAFDSG--SLFTQTLETDQRELLDEVVRDYWRQQFYGLPPEVARVVTD--SFK 189 Query: 200 NDEDIETLISDIISNRTA 217 + ++ ++ ++S A Sbjct: 190 SPTELREALTPLLSRSDA 207 >gi|307565702|ref|ZP_07628171.1| putative ATP-dependent helicase PcrA [Prevotella amnii CRIS 21A-A] gi|307345528|gb|EFN90896.1| putative ATP-dependent helicase PcrA [Prevotella amnii CRIS 21A-A] Length = 845 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 57/160 (35%), Gaps = 38/160 (23%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 L+S+ Q A + + V A AGSGKT +L ++ LL + P +L LT T A Sbjct: 8 LLSELNPHQREAVEYCDGPSLVVAGAGSGKTRVLTYKIAYLLESGLKPWNILALTFTNKA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ +I + + Sbjct: 68 AREMKDRIAKITNQ-------------------------------------SDANRIYMG 90 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 T H+ I+++ S F I DE S+ L++ K Sbjct: 91 TFHSIFSRILRKESQYIGYNSSFTIYDESDSRSLLKNIIK 130 >gi|45657496|ref|YP_001582.1| ATP-dependent DNA helicase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600735|gb|AAS70219.1| ATP-dependent DNA helicase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 732 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 77/230 (33%), Gaps = 55/230 (23%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 +S EQ A + A AGSGKT ++ R+ LL+ + + +T T A Sbjct: 5 FLSDLNEEQKKAVLQVNGPVLILAGAGSGKTRVITHRIANLLINHG-IDRICAVTFTNKA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +I+ P ++++ Sbjct: 64 AAEMVERVKKIVPFL--------------------------------------PANVQIK 85 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS-----------TLASIMLD 183 T H+ C I+++ + F I D + L+++ K TL + + Sbjct: 86 TFHSLCLYILRREASFFGFDNGFTIYDTTLQESLLKQVIKDLSLDPKFYKPSTLGNYISG 145 Query: 184 NNEELKKAFYEILEISNDEDIETLISDIIS---NRTALKLIFFFFSYLWR 230 +++ LE D +S I R F F +W+ Sbjct: 146 LKDKMLSP-ESYLEKEGRNDFSKAVSAIYKEYEKRKDANYAFDFGDLIWK 194 >gi|325145300|gb|EGC67578.1| DNA helicase II [Neisseria meningitidis M01-240013] Length = 735 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPI--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|189218921|ref|YP_001939562.1| ATP-dependent DNA helicase UvrD/PcrA [Methylacidiphilum infernorum V4] gi|189185779|gb|ACD82964.1| ATP-dependent DNA helicase UvrD/PcrA [Methylacidiphilum infernorum V4] Length = 636 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 52/160 (32%), Gaps = 38/160 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + ++ + P V A AGSGKT L RV L+ +P +L T T AA Sbjct: 6 VELNEEQKKAVTAPLGPILVIAGAGSGKTRTLTYRVAYLIEKGINPGRILLATFTNKAAR 65 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM +RV ++ + + T Sbjct: 66 EMLNRVDRLVNTDT--------------------------------------SQIWGGTF 87 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H C I++ +F I D E S +L+ + Sbjct: 88 HHLCHKILRNHAKTIGFEQNFTIIDREDSIQLLTGCIEEL 127 >gi|310826557|ref|YP_003958914.1| hypothetical protein ELI_0943 [Eubacterium limosum KIST612] gi|308738291|gb|ADO35951.1| hypothetical protein ELI_0943 [Eubacterium limosum KIST612] Length = 734 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHT 71 +D +++ + E A+ + A AGSGKT ++ R+ ++ + PS +L +T T Sbjct: 3 LLDGLNEQQRE--AAATTEGPVLILAGAGSGKTRTIIHRIAYIIESKKAWPSQILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +E + Sbjct: 61 NKAAGEMRERIA--------------------------------------AMNVEESDRI 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T HA C IM+ +F I D + K+L + K Sbjct: 83 WMYTFHAMCARIMRIHSQWLGYEDNFVIYDTDDQKRLYKTLIKEL 127 >gi|296314732|ref|ZP_06864673.1| DNA helicase II [Neisseria polysaccharea ATCC 43768] gi|296838466|gb|EFH22404.1| DNA helicase II [Neisseria polysaccharea ATCC 43768] Length = 735 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|254441324|ref|ZP_05054817.1| UvrD/REP helicase domain protein [Octadecabacter antarcticus 307] gi|198251402|gb|EDY75717.1| UvrD/REP helicase domain protein [Octadecabacter antarcticus 307] Length = 833 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 66/193 (34%), Gaps = 43/193 (22%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D + Q A + + A AG+GKT L R+ L+ A P +L +T T Sbjct: 34 VDYFAGLNPAQRQAVETLDGPVLMLAGAGTGKTKALTCRIAHLMATGRARPDEILAVTFT 93 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM +R+ + S G Sbjct: 94 NKAAREMKNRISGLTQGASE-------------------------------------GMR 116 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T HA C ++++ + S F I D + +L+++ L + +D + Sbjct: 117 WLGTFHAICVKLLRRHSELVGLKSSFTILDTDDQMRLLKQ----LLRASDIDEKRWPPRM 172 Query: 192 FYEILEISNDEDI 204 I++ ++ Sbjct: 173 LAGIIDGWKNKAW 185 >gi|194100011|ref|YP_002003150.1| UvrD [Neisseria gonorrhoeae NCCP11945] gi|193935301|gb|ACF31125.1| UvrD [Neisseria gonorrhoeae NCCP11945] Length = 735 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPI--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|59802078|ref|YP_208790.1| hypothetical protein NGO1757 [Neisseria gonorrhoeae FA 1090] gi|240017454|ref|ZP_04723994.1| UvrD [Neisseria gonorrhoeae FA6140] gi|240118830|ref|ZP_04732892.1| UvrD [Neisseria gonorrhoeae PID1] gi|260439632|ref|ZP_05793448.1| UvrD [Neisseria gonorrhoeae DGI2] gi|268604542|ref|ZP_06138709.1| DNA helicase II [Neisseria gonorrhoeae PID1] gi|291042871|ref|ZP_06568612.1| DNA helicase II [Neisseria gonorrhoeae DGI2] gi|293398115|ref|ZP_06642320.1| DNA helicase II [Neisseria gonorrhoeae F62] gi|59718973|gb|AAW90378.1| putative DNA helicase II [Neisseria gonorrhoeae FA 1090] gi|268588673|gb|EEZ53349.1| DNA helicase II [Neisseria gonorrhoeae PID1] gi|291013305|gb|EFE05271.1| DNA helicase II [Neisseria gonorrhoeae DGI2] gi|291611378|gb|EFF40448.1| DNA helicase II [Neisseria gonorrhoeae F62] Length = 735 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPI--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|41406991|ref|NP_959827.1| hypothetical protein MAP0893 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395342|gb|AAS03210.1| UvrD [Mycobacterium avium subsp. paratuberculosis K-10] Length = 774 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 46/216 (21%), Positives = 82/216 (37%), Gaps = 52/216 (24%) Query: 2 IYHNSFQEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-N 59 ++ + SE L+ +Q A S + A AGSGKT +L +RV L+ A Sbjct: 3 VHVTDAKPVSEAEQLLEGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRVAYLIAARG 62 Query: 60 AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119 +L +T T AAAEM RV+ ++ ++AR Sbjct: 63 VGVGQVLAITFTNKAAAEMRERVVRLVG---------------------------NRAR- 94 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKS--- 175 + V T H+ C I++ + S+F+I D + S++L++ + Sbjct: 95 ----------AMWVSTFHSTCVRILRNQASLIEGLNSNFSIYDADDSRRLLQMIGRDMGL 144 Query: 176 --------TLASIMLDNNEELKKAFYEILEISNDED 203 LA+ + + EL + +++ D Sbjct: 145 DIKRYSPRLLANAISNLKNELIDPAAAVANLTDGSD 180 >gi|241759542|ref|ZP_04757645.1| DNA helicase II [Neisseria flavescens SK114] gi|241320099|gb|EER56460.1| DNA helicase II [Neisseria flavescens SK114] Length = 735 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQTSVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|254805722|ref|YP_003083943.1| DNA helicase II [Neisseria meningitidis alpha14] gi|254669264|emb|CBA08172.1| DNA helicase II [Neisseria meningitidis alpha14] Length = 735 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|24215017|ref|NP_712498.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601] gi|24196064|gb|AAN49516.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601] Length = 732 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 77/230 (33%), Gaps = 55/230 (23%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 +S EQ A + A AGSGKT ++ R+ LL+ + + +T T A Sbjct: 5 FLSDLNEEQKKAVLQVNGPVLILAGAGSGKTRVITHRIANLLINHG-IDRICAVTFTNKA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +I+ P ++++ Sbjct: 64 AAEMVERVKKIVPFL--------------------------------------PANVQIK 85 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS-----------TLASIMLD 183 T H+ C I+++ + F I D + L+++ K TL + + Sbjct: 86 TFHSLCLYILRREASFFGFDNGFTIYDTTLQESLLKQVIKDLSLDPKFYKPSTLGNYISG 145 Query: 184 NNEELKKAFYEILEISNDEDIETLISDIIS---NRTALKLIFFFFSYLWR 230 +++ LE D +S I R F F +W+ Sbjct: 146 LKDKMLSP-ESYLEKEGRNDFSKAVSAIYKEYEKRKDANYAFDFGDLIWK 194 >gi|116493117|ref|YP_804852.1| ATP-dependent DNA helicase PcrA [Pediococcus pentosaceus ATCC 25745] gi|116103267|gb|ABJ68410.1| ATP-dependent DNA helicase PcrA [Pediococcus pentosaceus ATCC 25745] Length = 757 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 46/192 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 I ++ + E + ++ + A AGSGKT +L RV L+ +P +L +T Sbjct: 5 NLIKGLNDMQKEAVQTTE--GPLLIMAGAGSGKTRVLTHRVAYLIEEKGVNPWNVLAITF 62 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV ++ + Sbjct: 63 TNKAAREMRERVTSLLG--------------------------------------DEAAE 84 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELK 189 + V T HA C I+++ + F+IAD + + L K LA + D + + + Sbjct: 85 IWVSTFHALCVRILRRNIDQLGYNRAFSIADPSEQRTL----VKHILADLNYDPKKFDPR 140 Query: 190 KAFYEILEISND 201 I ND Sbjct: 141 SVLGTISNAKND 152 >gi|319411282|emb|CBY91690.1| DNA helicase II [Neisseria meningitidis WUE 2594] Length = 735 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPI--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|240129046|ref|ZP_04741707.1| UvrD [Neisseria gonorrhoeae SK-93-1035] gi|268687424|ref|ZP_06154286.1| DNA helicase II [Neisseria gonorrhoeae SK-93-1035] gi|268627708|gb|EEZ60108.1| DNA helicase II [Neisseria gonorrhoeae SK-93-1035] Length = 735 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPI--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|163732146|ref|ZP_02139592.1| UvrD/REP helicase [Roseobacter litoralis Och 149] gi|161394444|gb|EDQ18767.1| UvrD/REP helicase [Roseobacter litoralis Och 149] Length = 868 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 72/193 (37%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ + E + D + A AG+GKT L R++ LL A P+ +L +T T Sbjct: 27 YLDGLNPAQREAVEQLD--GPVLMLAGAGTGKTRALTARIVHLLNTGRARPNEVLAVTFT 84 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM +RV ++ G Sbjct: 85 NKAAREMKNRVGAMLGQPVE-------------------------------------GMP 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T HA C ++++ + S+F I D + +L+++ +++ +D+ + Sbjct: 108 WLGTFHAICVKLLRRHAELVGLKSNFTILDTDDQLRLLKQ----LVSAESIDDKRWPARQ 163 Query: 192 FYEILEISNDEDI 204 I++ + Sbjct: 164 LASIIDGWKNSAF 176 >gi|307704790|ref|ZP_07641686.1| recombination helicase AddA [Streptococcus mitis SK597] gi|307621699|gb|EFO00740.1| recombination helicase AddA [Streptococcus mitis SK597] Length = 1216 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TVEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLTRGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + KI + SD+ +HL + + P + T+ +F Sbjct: 89 ERLEK------------------KISQQIQESSDVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L++ + + + + K+ F +L Sbjct: 130 TQKFLGKHGYLIDIAPNFRILQNQSEQLLLK---NEVFHEVFEAHYQGKQKETFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + +S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223 >gi|282855099|ref|ZP_06264431.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J139] gi|282581687|gb|EFB87072.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes J139] Length = 810 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 62/163 (38%), Gaps = 40/163 (24%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL++ Q A V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 40 DLLADLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV++++ + + Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V T H+ I++ I+ +F+I D+ +K+L + Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLTTLVARD 164 >gi|15639883|ref|NP_219333.1| ATP-dependent nuclease, subunit A, putative [Treponema pallidum subsp. pallidum str. Nichols] gi|189026121|ref|YP_001933893.1| ATP-dependent nuclease, subunit A [Treponema pallidum subsp. pallidum SS14] gi|3323214|gb|AAC65853.1| ATP-dependent nuclease, subunit A, putative [Treponema pallidum subsp. pallidum str. Nichols] gi|189018696|gb|ACD71314.1| possible ATP-dependent nuclease, subunit A [Treponema pallidum subsp. pallidum SS14] gi|291060257|gb|ADD72992.1| ATP-dependent DNA helicase UvrD [Treponema pallidum subsp. pallidum str. Chicago] Length = 1239 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 15/168 (8%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHT 71 +EQ A + +A V+A AGSGKT ++ R + L++ A P ++ LT T Sbjct: 5 LFSFFQSLNAEQRRAVFSSHNAVVTAGAGSGKTKVISARYIHLVVERAIPVERIVVLTFT 64 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + AA EM+ R+ E + L + Q + +++ + +AR L G Sbjct: 65 RKAAMEMARRIYEDLR---------LCVQSASAQPEPGHEAYLLRAREALARF----GEA 111 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 ++ T+ AF I + I F+ EE+++ L E + Sbjct: 112 RIMTLDAFSHEIARVGARFFGIAPDFS-LSEEENRALAHECAEDFFLE 158 >gi|16330097|ref|NP_440825.1| DNA helicase II [Synechocystis sp. PCC 6803] gi|1652584|dbj|BAA17505.1| DNA helicase II [Synechocystis sp. PCC 6803] Length = 793 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 17/164 (10%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D ++ Q A + V A AGSGKT L R+ L+ + +P +L +T T Sbjct: 8 DYLAHLNPSQRRAVEHFCGPLLVVAGAGSGKTRALTYRIAHLIRQHRINPENILAVTFTN 67 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I ++ + ++ ++ GK K +S+ + L Sbjct: 68 KAAKEMKERLEKI---FAQAWAQQEFSQRWELLGKYEQKQLLSRVYKTVTK------PLW 118 Query: 133 VQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIE 170 + T H+ C I++ ++ + T F+I DE + L + Sbjct: 119 IGTFHSLCSRILRYDIDKYQDSSGRRWTKQFSIFDESDVQSLFK 162 >gi|308388456|gb|ADO30776.1| DNA helicase II [Neisseria meningitidis alpha710] Length = 735 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|229917962|ref|YP_002886608.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sp. AT1b] gi|229469391|gb|ACQ71163.1| ATP-dependent DNA helicase PcrA [Exiguobacterium sp. AT1b] Length = 738 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 78/223 (34%), Gaps = 53/223 (23%) Query: 7 FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTL 65 + E + ++ ++E + +D + A AGSGKT +L RV L+ P + Sbjct: 2 YNLSEELVKGMNPEQAEAVKHTD--GPLLIMAGAGSGKTRVLTHRVAYLMAAKQVAPWNI 59 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T AA EM R+ ++ + Sbjct: 60 LAITFTNKAAREMKDRIARLVGGVAE---------------------------------- 85 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS---------- 175 + + T H+ C I+++ F+I D I++ K Sbjct: 86 ----DIWISTFHSMCVRILRRDIDRIRYDRSFSILDASDQLTAIKQVLKELNLDPKKYEP 141 Query: 176 -TLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTA 217 TL ++ ++ EL+ A + + + E +ISD+ + Sbjct: 142 RTLLGMISNHKNELRTA-KDAAALVGNNPYERIISDVYTAYEK 183 >gi|327478847|gb|AEA82157.1| DNA-dependent helicase II [Pseudomonas stutzeri DSM 4166] Length = 729 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 66/185 (35%), Gaps = 43/185 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSH 80 +++ + V A AGSGKT +LV R+ L + A ++L +T T AAAEM Sbjct: 15 AQRQAVAALLGRQLVLAGAGSGKTRVLVHRIAWLHQVERASLHSILSVTFTNKAAAEMRQ 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ P G+ V T H Sbjct: 75 RIEQLLHV--------------------------------------NPQGMWVGTFHGLA 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ EA + +F I D + ++L K + + LD + + Sbjct: 97 HRLLRAHWREAKLAENFQILDSDDQQRL----VKRVIRELGLDEQRWPARQAQWWINAQK 152 Query: 201 DEDIE 205 DE + Sbjct: 153 DEGLR 157 >gi|325205321|gb|ADZ00774.1| DNA helicase II [Neisseria meningitidis M04-240196] Length = 735 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|288800136|ref|ZP_06405595.1| putative UvrD/REP helicase domain protein [Prevotella sp. oral taxon 299 str. F0039] gi|288333384|gb|EFC71863.1| putative UvrD/REP helicase domain protein [Prevotella sp. oral taxon 299 str. F0039] Length = 1076 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 11/206 (5%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95 A+AGSGKT L ++LL+ + +L +T T A EM R+L + S L D Sbjct: 10 ASAGSGKTFTLTIEYIKLLIKDPLSYKQILAVTFTNKATEEMKMRILSQLYGLSRLLPDS 69 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 EI K + + ++ L ++ ++QTI F + ++ E ++T+ Sbjct: 70 NAYLEIIKKDTELSEEQIRQRSSLALGYLIHNYSYFQIQTIDTFFQGVLNNLARELDLTA 129 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE-TLISDIISN 214 + ++ L E A + + D ++ K ++LE + +E+ +IS++ S Sbjct: 130 KLRVTLNDEQ--LKERAVDRLIEEL--DPKNKVLKWVLDLLEENQEENKAWNVISELKS- 184 Query: 215 RTALKLIFFFFSYLWRRKIIEKSLWS 240 F Y K + L Sbjct: 185 ---FGKNIFSDLYKQNEKQLSSFLED 207 >gi|300173630|ref|YP_003772796.1| ATP-dependent DNA helicase PcrA [Leuconostoc gasicomitatum LMG 18811] gi|299888009|emb|CBL91977.1| ATP-dependent DNA helicase PcrA [Leuconostoc gasicomitatum LMG 18811] Length = 747 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 42/176 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E I ++ ++E + + + A AGSGKT +L R+ L+ N P +L +T Sbjct: 5 ELISGMNDKQAEAVQIT--QGPLLIMAGAGSGKTRVLTHRIAHLVQDLNVFPWRILAITF 62 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ +++ + Sbjct: 63 TNKAAKEMRERISSLLSE-------------------------------------DVARD 85 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + V T HA I+++ + +F I D + L++ ++ D + Sbjct: 86 IWVSTFHALAVRILRRDGESIGLARNFTIIDTSAQRTLMKRVISDL--NLNTDQYD 139 >gi|261378597|ref|ZP_05983170.1| DNA helicase II [Neisseria cinerea ATCC 14685] gi|269144930|gb|EEZ71348.1| DNA helicase II [Neisseria cinerea ATCC 14685] Length = 735 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|297583056|ref|YP_003698836.1| ATP-dependent DNA helicase PcrA [Bacillus selenitireducens MLS10] gi|297141513|gb|ADH98270.1| ATP-dependent DNA helicase PcrA [Bacillus selenitireducens MLS10] Length = 773 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 39/157 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAAAAEM 78 K +Q + A AGSGKT +L R+ L+ P ++L +T T AA EM Sbjct: 36 NKEQQEAVVHNEGPLLIMAGAGSGKTRVLTNRIAYLIGEKGVPHWSILAITFTNKAAREM 95 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + + + + T H+ Sbjct: 96 KDRVKKNVGYEAE--------------------------------------EMWISTFHS 117 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 C I+++ +F I D +I+ K Sbjct: 118 MCVRILRRDIDRIGYNRNFTILDASDQLTVIKRIIKE 154 >gi|94967078|ref|YP_589126.1| ATP-dependent DNA helicase Rep [Candidatus Koribacter versatilis Ellin345] gi|94549128|gb|ABF39052.1| ATP-dependent DNA helicase, Rep family [Candidatus Koribacter versatilis Ellin345] Length = 849 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 60/170 (35%), Gaps = 44/170 (25%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + + + +Q A + + A AGSGKT ++ R+ L+ P ++L +T T Sbjct: 1 MQFLEKLNPQQREAVETVHGPVLILAGAGSGKTRVITYRIAYLIEKVGVSPDSILAMTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM RV ++ + Sbjct: 61 NKAAAEMQERVEHLVGGRTLAKPV------------------------------------ 84 Query: 132 KVQTIHAFCEAIMQQFPLEANITS-----HFAIADEEQSKKLIEEAKKST 176 + T H+FC ++++ I FAI DE + L++ A K Sbjct: 85 -ISTFHSFCVRVLRRDIEALQINGKGYRKDFAIYDESDQQSLVKSAMKRL 133 >gi|119713303|gb|ABL97368.1| DNA helicase II [uncultured marine bacterium HF10_45G01] Length = 428 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 39/163 (23%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTK 72 D + Q A + A AGSGKT +L R+ ++ P+ +L +T T Sbjct: 5 DYLKNLNDAQKEAVLHLDGPLLIVAGAGSGKTKVLTSRIANIIKEKKAFPNQILAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM +RV +I+ + + G Sbjct: 65 KAAKEMQNRVSKILGSTAV-------------------------------------GLSW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + T H+ C ++++ AN+ S+F I D + +LI+ K+ Sbjct: 88 LGTFHSICAKLLRKHASAANLNSNFTIIDTDDQIRLIKNICKA 130 >gi|73662195|ref|YP_300976.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494710|dbj|BAE18031.1| ATP-dependent DNA helicase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 738 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 60/162 (37%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+++ EQ A + A AGSGKT +L R+ LL + P +L +T T Sbjct: 4 LVNKMNDEQSQAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++ + + L + Sbjct: 64 AAKEMKARVETLVGEQAQV--------------------------------------LWM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F I D K +I++ K+ Sbjct: 86 STFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKN 127 >gi|27381672|ref|NP_773201.1| DNA helicase II [Bradyrhizobium japonicum USDA 110] gi|27354841|dbj|BAC51826.1| DNA helicase II [Bradyrhizobium japonicum USDA 110] Length = 872 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 +S EQ A + V A AG+GKT +L R+ +L A P+ +L +T T Sbjct: 50 YLSGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSQGRARPAEILSVTFTNK 109 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM HR+ +++ G + Sbjct: 110 AAREMKHRLGQMLGHAVE-------------------------------------GMPWL 132 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ I++ A + S+F + D + +L+++ L + +D+ + Sbjct: 133 GTFHSIGGRILRTHAELAQLKSNFTVLDVDDQVRLLKQ----LLQAENIDDKRWPARMLA 188 Query: 194 EILEISNDEDI 204 +++ + + Sbjct: 189 GLIDGWKNRGL 199 >gi|261391767|emb|CAX49221.1| DNA helicase II [Neisseria meningitidis 8013] Length = 735 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPI--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|188585100|ref|YP_001916645.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349787|gb|ACB84057.1| UvrD/REP helicase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 726 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 62/188 (32%), Gaps = 45/188 (23%) Query: 17 ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 +++ EQ A V A AGSGKT +L R+ LL HP +L LT T A Sbjct: 7 LAELNQEQTAAVTAGDGPVLVLAGAGSGKTKVLTYRIAYLLETKGIHPEQILALTFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV TI+E V Sbjct: 67 AGEMKERV---------------------------------------QTIVEGDAPSWVS 87 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HA C I+++ F I D K+ K LA LD + +A + Sbjct: 88 TFHAACVRILRREIDLLGYGKDFLIYDTRDKTKI----VKDLLADFNLDKKKYPHQAVAK 143 Query: 195 ILEISNDE 202 + + Sbjct: 144 KISGVKNN 151 >gi|314982168|gb|EFT26261.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA3] gi|315090399|gb|EFT62375.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL110PA4] Length = 810 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 62/163 (38%), Gaps = 40/163 (24%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL++ Q A V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 40 DLLADLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV++++ + + Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V T H+ I++ I+ +F+I D+ +K+L + Sbjct: 122 VSTFHSAAVRILRTDIDRLGISRNFSIYDDTDAKRLTTLVARD 164 >gi|254674097|emb|CBA09881.1| DNA helicase II [Neisseria meningitidis alpha275] Length = 735 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|304314626|ref|YP_003849773.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str. Marburg] gi|302588085|gb|ADL58460.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str. Marburg] Length = 916 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 74/205 (36%), Gaps = 43/205 (20%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78 T++++ + A G+GKT +LV+R L+ P +L +T T+ AA E+ Sbjct: 13 TENQKRAVKKTDGPLVIVAGPGAGKTRVLVERTAYLVKRKGVSPENILVITFTEKAADEL 72 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R++ + + L +++ TIH+ Sbjct: 73 KSRLINCVGLDAEL--------------------------------------MQISTIHS 94 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIM-LDNNEELKKAFYEIL 196 FC I+++ P E ++ + F I DEE + L S M + E + F Sbjct: 95 FCSTILREHPEEHDLGAGFEILDEESQLMFLRSVFYRIGLNSFMKMGEVHEAIEFFNRCT 154 Query: 197 EISNDEDIETLISDIISNRTALKLI 221 E D D L+ + K Sbjct: 155 ENCVDPD--ELMEALKKRYPDKKRY 177 >gi|296110659|ref|YP_003621040.1| ATP-dependent DNA helicase PcrA [Leuconostoc kimchii IMSNU 11154] gi|295832190|gb|ADG40071.1| ATP-dependent DNA helicase PcrA [Leuconostoc kimchii IMSNU 11154] Length = 749 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 52/206 (25%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E I+ ++ ++E + + + A AGSGKT +L R+ L+ N P +L +T Sbjct: 5 ELINGMNDKQAEAVQTT--QGPLLIMAGAGSGKTRVLTHRIAHLVQDLNVFPWRILAITF 62 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ +++ + Sbjct: 63 TNKAAKEMRERISALLSE-------------------------------------DVARD 85 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + V T HA I+++ ++ +F I D K L+ K ++ + LD N+ + Sbjct: 86 IWVSTFHALAVRILRRDGENIGLSRNFTIIDTSAQKTLM----KRVISDLNLDTNQYDPR 141 Query: 191 AFYEILEISNDEDIETLISDIISNRT 216 ++ + + D++ R Sbjct: 142 TILGMISNAKN--------DMLRPRD 159 >gi|219667567|ref|YP_002458002.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium hafniense DCB-2] gi|219537827|gb|ACL19566.1| ATP-dependent DNA helicase PcrA [Desulfitobacterium hafniense DCB-2] Length = 755 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 74/222 (33%), Gaps = 48/222 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 ++ + A AGSGKT +L R+ L+ P +L +T T AA EM RV Sbjct: 11 QRQAVEHREGPLLILAGAGSGKTRVLTYRIAHLIAQGVEPWHILAITFTNKAAQEMRDRV 70 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 ++ + GL V T H+ C Sbjct: 71 YSLVGSEGR--------------------------------------GLWVATFHSACVR 92 Query: 143 IMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I++ + + F I D LI KS + + LD + +A ++ + + Sbjct: 93 ILRSEIGYLPGYSRSFVIYDSGDQLALI----KSCMKELNLDEKKFAPRAIEAVISDAKN 148 Query: 202 EDIETLISDIISNR--TALKLIFFFFSYLWRRKIIEKSLWSI 241 + L + S R + L+ +K++ + Sbjct: 149 K---LLTPEDFSRRAKDYFEQKAERVYELYLKKLLANNALDF 187 >gi|319788397|ref|YP_004147872.1| DNA helicase II [Pseudoxanthomonas suwonensis 11-1] gi|317466909|gb|ADV28641.1| DNA helicase II [Pseudoxanthomonas suwonensis 11-1] Length = 726 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 41/169 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67 + S +D ++ + E + A P V A AGSGKT +L R+ L + +L Sbjct: 2 DVSHLLDGLNSAQREAVSA--PPGHYLVLAGAGSGKTRVLTHRIAWLNEVHGVPAHGILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R + S Sbjct: 60 VTFTNKAAGEMRSRADMQLRNGSR------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G+ + T H +++ EA + F + D + ++L++ + Sbjct: 84 --GMWIGTFHGIAHRLLRLHWNEARLPESFQVLDSDDQQRLVKRVVQQL 130 >gi|298292379|ref|YP_003694318.1| UvrD/REP helicase [Starkeya novella DSM 506] gi|296928890|gb|ADH89699.1| UvrD/REP helicase [Starkeya novella DSM 506] Length = 690 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 38/170 (22%) Query: 16 LISQTKSEQLLASD---------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66 + + +Q A + V A AGSGKT+ L RV L++ A P ++ Sbjct: 6 YLDKLNPQQRRAVEHGIAGPGDVTGGPLLVIAGAGSGKTNTLAHRVAHLIVNGADPRRIM 65 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 LT ++ AAAEM+ RV I + +L+ +T Sbjct: 66 LLTFSRRAAAEMTRRVERIAAHVLGPNAAVLTEGLTFA---------------------- 103 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++ + ++ + +F I D E S LI + Sbjct: 104 -------GTFHGVGARLLRDYAVQIGLDPNFTIHDREDSADLINLVRHEL 146 >gi|328946442|gb|EGG40582.1| exonuclease RexA [Streptococcus sanguinis SK1087] Length = 1224 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 79/228 (34%), Gaps = 41/228 (17%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++VQR++ +L S L T T AA E+ Sbjct: 29 TAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVAVSQLFISTFTVKAAGELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R + K G+ +++ + + L L + T+ AF Sbjct: 89 ER-------------------LEKELGQALKEAESPELKQHLAQQLADLPNADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 + ++ + +F I + +++ NE + F + Sbjct: 130 TQKVLSRHGYLLGWAPNFRILQSASEQLILQ--------------NEVFSQVFDRYYDSK 175 Query: 200 NDEDIETLISDIISNRTAL--------KLIFFFFSYLWRRKIIEKSLW 239 L+ + R L ++ F S ++ +E++ Sbjct: 176 RQALFSRLVKNFTGKRKDLSGFREQVYRIYSFLQSTSSPQRWLEETFL 223 >gi|254881794|ref|ZP_05254504.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319641188|ref|ZP_07995889.1| helicase [Bacteroides sp. 3_1_40A] gi|254834587|gb|EET14896.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317387162|gb|EFV68040.1| helicase [Bacteroides sp. 3_1_40A] Length = 796 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 55/163 (33%), Gaps = 39/163 (23%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + + + Q A + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 3 NYLEELNESQRNAVLYNEGPSLVIAGAGSGKTRVLTYKIAYLLERGYTPWSILALTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + + L + Sbjct: 63 AAREMKERIARQVG--------------------------------------DQARYLWM 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ TS+F I D SK LI+ K Sbjct: 85 GTFHSIFSRILRCEAQAVGFTSNFTIYDSSDSKSLIKSIVKEM 127 >gi|124266478|ref|YP_001020482.1| DNA helicase/exodeoxyribonuclease V subunit A [Methylibium petroleiphilum PM1] gi|124259253|gb|ABM94247.1| DNA helicase/exodeoxyribonuclease V, subunit A [Methylibium petroleiphilum PM1] Length = 1086 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 9/200 (4%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 +A DP RS V A AG+GKT +LV R+LR LL A P +L +T T+ AA EM R+ Sbjct: 22 RVACDPRRSVVVEACAGAGKTWMLVSRILRALLDGAAPQEILAITFTRKAAGEMRERLQG 81 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL-KVQTIHAFCEAI 143 + ++ D + + + L + L + G L +++T H + + Sbjct: 82 WLHEFALCDDAQREQALVDRGCTRQEAGVLVPRLAALYSELLSGGRLVEIRTFHGWFSQL 141 Query: 144 MQQFPLE----ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 ++ PL + S + ++ L + L+++ D L++ F ++ Sbjct: 142 LRAAPLALLEPLGLQSEVDLLEDR--SDLQPHYWRRFLSAVSAD--AALREDFAALVHDR 197 Query: 200 NDEDIETLISDIISNRTALK 219 + + + R ++ Sbjct: 198 GRHVAQQWLEAALDQRVEIE 217 >gi|254453679|ref|ZP_05067116.1| UvrD/REP helicase [Octadecabacter antarcticus 238] gi|198268085|gb|EDY92355.1| UvrD/REP helicase [Octadecabacter antarcticus 238] Length = 837 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 39/164 (23%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D Q A + + A AG+GKT L R+ L+ A P +L +T T Sbjct: 34 VDYFEGLNPAQRQAVETLNGPVLMLAGAGTGKTKALTCRIAHLMATGGARPDEILAVTFT 93 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM +R+ + S G Sbjct: 94 NKAAREMMNRIGGLTQGASD-------------------------------------GMR 116 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + T HA C ++++ + S+F I D + +L+++ ++ Sbjct: 117 WLGTFHAICVKLLRRHAELVGLKSNFTILDTDDQLRLLKQLIRA 160 >gi|92119222|ref|YP_578951.1| UvrD/REP helicase [Nitrobacter hamburgensis X14] gi|91802116|gb|ABE64491.1| ATP-dependent DNA helicase, Rep family [Nitrobacter hamburgensis X14] Length = 689 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 33/172 (19%) Query: 8 QEHSETIDLISQTKSEQL----LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63 Q + +D ++ + + P V A AGSGKT+ L RV L++ A P Sbjct: 2 QPAAPYLDSLNPEQRRAVEHGTAGPGPFAPLLVIAGAGSGKTNTLAHRVAHLIVNGADPR 61 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L +T ++ AA+EM+ RV I + +L+ +T Sbjct: 62 RILLMTFSRRAASEMTRRVERIARKVMGDNAGVLTDALT--------------------- 100 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H +++ + + + F I D E S L+ + Sbjct: 101 --------WSGTFHGIGARLLRDYSDQIGLDPQFTIHDREDSADLMNLIRHE 144 >gi|228904778|ref|ZP_04068832.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222] gi|228854792|gb|EEM99396.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis IBL 4222] Length = 644 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 74/219 (33%), Gaps = 50/219 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 S+Q V A AGSGKT +L R+ LL P +L +T T +A EM Sbjct: 5 NSSQQRAVLTTEGRVLVLAGAGSGKTKVLTTRIAYLLQQGVDPWRILAITFTNKSAKEMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV + + S + T H+ Sbjct: 65 ERVTGMDSRASKS---------------------------------------WIGTFHSI 85 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEELKKA 191 C I+ + F + D+ K L++ EA K+ + +++ + +A Sbjct: 86 CNRILSTNIHHLGMD-MFTLMDDTDQKALVKTAAVQLGLEADKNIVYNLLSQISLWKNEA 144 Query: 192 FY-EILEISNDEDIETL-ISDIISNRTALKLIFFFFSYL 228 + ++ D E L +S I LK I +F Y Sbjct: 145 ISPGQAQSNSTGDKEKLAVSHIYQKYEDLKAIHNYFDYD 183 >gi|75758386|ref|ZP_00738509.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74494112|gb|EAO57205.1| ATP-dependent DNA helicase pcrA [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 653 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 74/219 (33%), Gaps = 50/219 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 S+Q V A AGSGKT +L R+ LL P +L +T T +A EM Sbjct: 14 NSSQQRAVLTTEGRVLVLAGAGSGKTKVLTTRIAYLLQQGVDPWRILAITFTNKSAKEMK 73 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV + + S + T H+ Sbjct: 74 ERVTGMDSRASKS---------------------------------------WIGTFHSI 94 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEELKKA 191 C I+ + F + D+ K L++ EA K+ + +++ + +A Sbjct: 95 CNRILSTNIHHLGMD-MFTLMDDTDQKALVKTAAVQLGLEADKNIVYNLLSQISLWKNEA 153 Query: 192 FY-EILEISNDEDIETL-ISDIISNRTALKLIFFFFSYL 228 + ++ D E L +S I LK I +F Y Sbjct: 154 ISPGQAQSNSTGDKEKLAVSHIYQKYEDLKAIHNYFDYD 192 >gi|259416911|ref|ZP_05740831.1| DNA helicase II [Silicibacter sp. TrichCH4B] gi|259348350|gb|EEW60127.1| DNA helicase II [Silicibacter sp. TrichCH4B] Length = 811 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 73/195 (37%), Gaps = 44/195 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 + ++ ++ + E + D + A AG+GKT L R++ LL N A + +L +T Sbjct: 25 TPYMEGLNAAQREAVETLD--GPVLMLAGAGTGKTKALTTRIVHLLTTNRARTNEILAVT 82 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV ++ + G Sbjct: 83 FTNKAAREMKERVGRMLGQPAE-------------------------------------G 105 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + T H+ C ++++ + S+F I D + +L+++ + + +D+ Sbjct: 106 MPWLGTFHSICVKLLRRHAELVGLKSNFTILDTDDQIRLLKQ----LIQAAGIDDKRWPA 161 Query: 190 KAFYEILEISNDEDI 204 + I++ + + Sbjct: 162 RMLANIIDDWKNRAL 176 >gi|325135039|gb|EGC57667.1| DNA helicase II [Neisseria meningitidis M13399] Length = 735 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|218767076|ref|YP_002341588.1| DNA helicase II [Neisseria meningitidis Z2491] gi|6900436|emb|CAB72035.1| DNA helicase II [Neisseria meningitidis] gi|121051084|emb|CAM07354.1| DNA helicase II [Neisseria meningitidis Z2491] Length = 735 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|83954004|ref|ZP_00962725.1| DNA helicase II, putative [Sulfitobacter sp. NAS-14.1] gi|83841949|gb|EAP81118.1| DNA helicase II, putative [Sulfitobacter sp. NAS-14.1] Length = 806 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 71/193 (36%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ + + D + A AG+GKT L R++ L+ A P+ +L +T T Sbjct: 27 YLDGLNPAQRAAVEQMD--GPVLMLAGAGTGKTKALTARIVHLMNTGRARPNEILAVTFT 84 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM +RV ++ G Sbjct: 85 NKAAREMKNRVGHMLGQSIE-------------------------------------GMP 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T HA C ++++ + S+F I D + +L+++ + + +D+ + Sbjct: 108 WLGTFHAICVKLLRRHAELVGLKSNFTILDTDDQLRLLKQ----LIKAEGIDDKRWPARL 163 Query: 192 FYEILEISNDEDI 204 +++ + + Sbjct: 164 LSGVIDGWKNRAL 176 >gi|326387191|ref|ZP_08208801.1| ATP-dependent DNA helicase Rep [Novosphingobium nitrogenifigens DSM 19370] gi|326208372|gb|EGD59179.1| ATP-dependent DNA helicase Rep [Novosphingobium nitrogenifigens DSM 19370] Length = 764 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 85/223 (38%), Gaps = 49/223 (21%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 + E + +++ + E +L++D + A AG+GKT L R+ LL A PS +LC Sbjct: 11 DLPEWLSRLNEPQREAVLSTD--GPVLMLAGAGTGKTAALTARLAWLLRQRLAWPSEILC 68 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV +I Sbjct: 69 VTFTNKAAREMRERVGHLIGPAVE------------------------------------ 92 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + T HA ++++ +TS+F I D + +L+++ + + +D+ Sbjct: 93 -GMPWLGTFHAIAAKMLRRHAELVGLTSNFTILDTDDQLRLLKQ----LIQAEGVDDKRW 147 Query: 188 LKKAFYEILEISNDE-----DIETLISDIISNRTALKLIFFFF 225 + +++ + D++ L ++ +N + + Sbjct: 148 PARQLAGLIDRWKNRGLNPADLDALENEAYANGRGQRFYALYQ 190 >gi|325474933|gb|EGC78119.1| UvrD/Rep family ATP-dependent DNA helicase [Treponema denticola F0402] Length = 745 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 41/160 (25%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 D ++ EQL A S + A AGSGKT ++ ++ L+ N P +L +T T Sbjct: 5 DYLNILNEEQLAAVKHQGSPLLILAGAGSGKTRVITTKIAYLIAEHNIEPERILAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EMS R + + Sbjct: 65 KAAKEMSER---------------------------------------ASNLDKRAERAM 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 ++T H+F I++ + A ++ +F I D++ + L+ +A Sbjct: 86 IRTFHSFGAWILRMYAEWAGLSHNFTIYDDDDALSLLTQA 125 >gi|150006034|ref|YP_001300778.1| putative helicase [Bacteroides vulgatus ATCC 8482] gi|149934458|gb|ABR41156.1| putative helicase [Bacteroides vulgatus ATCC 8482] Length = 796 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 55/163 (33%), Gaps = 39/163 (23%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + + + Q A + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 3 NYLEELNESQRNAVLYNEGPSLVIAGAGSGKTRVLTYKIAYLLERGYTPWSILALTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + + L + Sbjct: 63 AAREMKERIARQVG--------------------------------------DQARYLWM 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ TS+F I D SK LI+ K Sbjct: 85 GTFHSIFSRILRCEAQAVGFTSNFTIYDSSDSKSLIKSIVKEM 127 >gi|37521963|ref|NP_925340.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421] gi|35212962|dbj|BAC90335.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421] Length = 793 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 64/170 (37%), Gaps = 26/170 (15%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q V A AGSGKT +L R+ L+ P +L +T T AA EM Sbjct: 10 NPSQQKAVERFNGPLLVVAGAGSGKTRVLTYRIAHLIETYQVDPEHILAVTFTNKAAGEM 69 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+L++ + + + P+ + A + +++ L V T HA Sbjct: 70 KERILQL------FCERTARSRGGEAFAALPDPERRAIAGRVRRELIQ---PLWVGTFHA 120 Query: 139 FCEAIMQQFPLEANITS-----------HFAIADEEQSKKLIEEAKKSTL 177 C +++ +I +F I DE + I++ L Sbjct: 121 LCARMLRY-----DIDKYTDQRGRTWQRNFTIFDESDVQDQIKDIVTKQL 165 >gi|325283117|ref|YP_004255658.1| UvrD/REP helicase [Deinococcus proteolyticus MRP] gi|324314926|gb|ADY26041.1| UvrD/REP helicase [Deinococcus proteolyticus MRP] Length = 767 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 58/160 (36%), Gaps = 41/160 (25%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL+SQ +Q A+D T A V A AGSGKT L+ R+ L+ +L +T T Sbjct: 34 DLLSQLNEQQAAAADHFTGPALVIAGAGSGKTRTLIYRIAHLINHYGVDAGEILAVTFTN 93 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R ++ L Sbjct: 94 KAAAEMRERAGRLVPEA---------------------------------------DRLW 114 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 + T H+ I++ + + F I D++ ++++ Sbjct: 115 MSTFHSAGVRILRAYGEHIGLKRGFVIYDDDDQLDILKQI 154 >gi|93569010|gb|ABF13475.1| helicase [Arcanobacterium pyogenes] Length = 868 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 52/157 (33%), Gaps = 39/157 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT +L R+ L+ + PS +L +T T AA EM Sbjct: 69 NAEQRRAVIHSGGHLLVVAGAGSGKTRVLTTRIYHLISSGSVRPSEILAITFTNKAAKEM 128 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +I T + + T H+ Sbjct: 129 RERLESMIGP--------------------------------------TAQRMWISTFHS 150 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 C I++ + S F I D S +L+ + Sbjct: 151 ACVRILRAEHEALGMRSTFTIYDSADSNRLMTMVARE 187 >gi|218296511|ref|ZP_03497239.1| UvrD/REP helicase [Thermus aquaticus Y51MC23] gi|218243053|gb|EED09585.1| UvrD/REP helicase [Thermus aquaticus Y51MC23] Length = 701 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 59/167 (35%), Gaps = 40/167 (23%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69 SE L S ++++ A V A AGSGKT +V RV L+ PS +L +T Sbjct: 7 SEEALLSSLNEAQRQAVLHFEGPALVVAGAGSGKTRTVVHRVAYLIARRGVFPSEILAVT 66 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ ++ G Sbjct: 67 FTNKAAEEMKARLKAMVRGA---------------------------------------G 87 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L V T HA I++ + + F + DE+ L++E K Sbjct: 88 ELWVSTFHAAALRILRVYGERVGLKPGFVVYDEDDQTALLKEVLKEL 134 >gi|313678484|ref|YP_004056224.1| ATP-dependent DNA helicase PcrA [Mycoplasma bovis PG45] gi|312950464|gb|ADR25059.1| ATP-dependent DNA helicase PcrA [Mycoplasma bovis PG45] Length = 734 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 39/198 (19%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + ++ + +++ ++E L D + A AGSGKT +L +++ L+ + P+ +L Sbjct: 10 QKAKIFEGLNEEQTEALYYFD--GPLRIIAGAGSGKTRVLTRKIAYLINVLGISPNHILA 67 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEMS RV + Sbjct: 68 VTFTNKAAAEMSERVKQ------------------------------------YTNTKFN 91 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G ++ T H+ C I+++ N+ + F I D+ KK++++ K N + Sbjct: 92 KGTAEISTFHSLCARILREEAFHINLKNDFQIIDDNDKKKILKDLYKEHDLIPTDSNFKN 151 Query: 188 LKKAFYEILEISNDEDIE 205 L + F + D D E Sbjct: 152 LIRLFSWLKNKLYDSDEE 169 >gi|302036648|ref|YP_003796970.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii] gi|300604712|emb|CBK41044.1| ATP-dependent DNA helicase [Candidatus Nitrospira defluvii] Length = 717 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 39/165 (23%) Query: 13 TIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 ++D + ++Q A + A V A AGSGKT LV RV L+ + PS +L LT T Sbjct: 65 SLDYAKELNAQQYAAVTAADGPALVIAGAGSGKTRTLVHRVAYLIDSGVDPSQILLLTFT 124 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + ++ EM RV +I + S Sbjct: 125 RKSSEEMLERVGALIGSRSQRVCG------------------------------------ 148 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ ++++ I F I D ++ LI + Sbjct: 149 --GTFHSVANMLLRRHGRVLGIEPGFTIMDRGDAEDLIALLRAQL 191 >gi|170099549|ref|XP_001880993.1| predicted protein [Laccaria bicolor S238N-H82] gi|164644518|gb|EDR08768.1| predicted protein [Laccaria bicolor S238N-H82] Length = 1055 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 76/200 (38%), Gaps = 46/200 (23%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + A GSGKT +L R+ L+L + P ++ +T T AA EM R+ ++I Sbjct: 40 PETPLQILAGPGSGKTKVLTSRIAHLILNHHLPPFSICAVTFTNKAANEMRERLTKLIGK 99 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 E L++ T HA C ++++ Sbjct: 100 -------------------------------------ERTSQLRMGTFHALCARFLRKYA 122 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN-NEELKKAFYEILEISNDED---- 203 + +F + D E+SKK+I+ K A + +N + + + I + + E Sbjct: 123 HLVKLAENFTVCDAEESKKIIQALLKPYTAYLASENLDLQPGRVVSSISKAKSKEQSGSV 182 Query: 204 -IETLISD--IISNRTALKL 220 +E +I I R L L Sbjct: 183 FLEEVIKAERRIRQRNGLPL 202 >gi|81429165|ref|YP_396166.1| ATP-dependent DNA helicase [Lactobacillus sakei subsp. sakei 23K] gi|78610808|emb|CAI55859.1| ATP-dependent DNA helicase [Lactobacillus sakei subsp. sakei 23K] Length = 749 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 50/158 (31%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 + + A AGSGKT +L RV L+ + P +L +T T AA EM Sbjct: 11 NPEQAEAVLTTEGPLLIMAGAGSGKTRVLTHRVAYLIEEKHVLPWRILAITFTNKAAREM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ + + V T HA Sbjct: 71 RERVGNLLGEGAQ--------------------------------------DVWVSTFHA 92 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + F IAD + L+ + Sbjct: 93 LCVRILRREIEQIGYNRAFTIADPSEQLTLMRHVCRDL 130 >gi|328957929|ref|YP_004375315.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. 17-4] gi|328674253|gb|AEB30299.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. 17-4] Length = 748 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 + ++ ++ + + ++ + + A AGSGKT +L R+ L+ N +P +L +T Sbjct: 6 DLLNGMNPKQKDAVVCT--KGPLLIMAGAGSGKTRVLTHRIAYLIEEKNVNPWNILAITF 63 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV ++ Sbjct: 64 TNKAAKEMKERVTRLMKEGG--------------------------------------SD 85 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + V T H+ C I+++ T F I+D + + L++ K Sbjct: 86 VWVSTFHSMCVRILRRDIDRIGYTKAFTISDPSEQQTLMKRILKE 130 >gi|39935869|ref|NP_948145.1| UvrD/REP helicase [Rhodopseudomonas palustris CGA009] gi|39649723|emb|CAE28244.1| ATP-dependent DNA helicase [Rhodopseudomonas palustris CGA009] Length = 687 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 58/169 (34%), Gaps = 32/169 (18%) Query: 11 SETIDLISQTKS---EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 + +D ++ + E P V A AGSGKT+ L RV L++ A P +L Sbjct: 5 APILDGLNPEQRCAVEHGAGPAPCPPLLVIAGAGSGKTNTLAHRVAHLVVGGADPYRILL 64 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T ++ AAAEM+ RV I LS + Sbjct: 65 MTFSRRAAAEMTRRVERIARKVLGDRASALSGGLH------------------------- 99 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++ + + F I D E S L+ + Sbjct: 100 ----WAGTFHGIGARLLRDYAERIGLDPGFTIHDREDSADLMNLVRHDL 144 >gi|307709426|ref|ZP_07645883.1| recombination helicase AddA [Streptococcus mitis SK564] gi|307619740|gb|EFN98859.1| recombination helicase AddA [Streptococcus mitis SK564] Length = 1216 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 85/223 (38%), Gaps = 31/223 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + KI + D+ +HL + + P + T+ +F Sbjct: 89 ERLEK------------------KISQQIQESGDVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILE- 197 + + + +I +F I + + L++ + + + + K+ F +L+ Sbjct: 130 TQKFLGKHGYLIDIAPNFRILQNQSEQLLLK---NEVFHEVFEAHYQGKQKETFSHLLKN 186 Query: 198 -ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + +D L + K+ F S +K + +S Sbjct: 187 FAGSGKDERGLRQQVY------KIYDFLQSTSNPQKWLSESFL 223 >gi|120405823|ref|YP_955652.1| ATP-dependent DNA helicase PcrA [Mycobacterium vanbaalenii PYR-1] gi|119958641|gb|ABM15646.1| ATP-dependent DNA helicase PcrA [Mycobacterium vanbaalenii PYR-1] Length = 775 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 42/160 (26%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E +D ++ + + +L + A AGSGKT +L +R+ LL A + +L +T Sbjct: 15 ELLDGLNPQQRQAVL--HQGTPLLIVAGAGSGKTAVLTRRIAYLLAARDVGVGQVLAITF 72 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV+ ++ +AR+ Sbjct: 73 TNKAAAEMRERVVSLVG---------------------------PRARN----------- 94 Query: 131 LKVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLI 169 + V T H+ C I++ Q L + S+F+I D + S++L+ Sbjct: 95 MWVSTFHSTCVRILRNQASLLPGLNSNFSIYDADDSRRLL 134 >gi|119387000|ref|YP_918055.1| UvrD/REP helicase [Paracoccus denitrificans PD1222] gi|119377595|gb|ABL72359.1| ATP-dependent DNA helicase, Rep family [Paracoccus denitrificans PD1222] Length = 799 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 65/198 (32%), Gaps = 49/198 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 + +D ++ + + A D + A AG+GKT L R+ LL A P +L +T Sbjct: 29 TPYLDGLNPAQRAAVEALD--GPVLLLAGAGTGKTRALTTRIAHLLNLGLARPGQILAVT 86 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ ++ G Sbjct: 87 FTNKAAREMKDRIGRLLGEMVE-------------------------------------G 109 Query: 130 GLKVQTIHAFCEAIMQQFPLEAN-----ITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 + T H+ I+++ + F I D + +L+++ + + +D Sbjct: 110 MPWLGTFHSISVKILRRHAELIGDGELHLKPSFTILDTDDQIRLLKQ----LIQAENIDE 165 Query: 185 NEELKKAFYEILEISNDE 202 + +++ + Sbjct: 166 KRWPARQLAHLIDGWKNR 183 >gi|315452894|ref|YP_004073164.1| DNA helicase [Helicobacter felis ATCC 49179] gi|315131946|emb|CBY82574.1| DNA helicase [Helicobacter felis ATCC 49179] Length = 926 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 79/193 (40%), Gaps = 16/193 (8%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 + + A+AGSGKT LV R + LLL +L +T T AAAEM RVL+ + Sbjct: 5 INTNPHLVLRASAGSGKTFALVLRYVALLLQGVRAHEILAITFTNKAAAEMQGRVLKALE 64 Query: 88 AW--------SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + L + G + + ++ ++ TI AF Sbjct: 65 ELLIDATSNPVEFKNPALLQALQDTYGLDLGFIA-PRIPAVYARFIQ--DKPQIMTIDAF 121 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 + ++++F +++ F ++ + +KL+ S + ++ + E L++ +L S Sbjct: 122 FQRVLRKFSHFVGVSAQFVLSHLDPQEKLL-----SFIQALKSKDKESLRRFCAHVLNAS 176 Query: 200 NDEDIETLISDII 212 + + I+ Sbjct: 177 KSFNATEALKSIL 189 >gi|299144359|ref|ZP_07037439.1| ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518844|gb|EFI42583.1| ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 730 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 42/176 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 ++ +SE LL ++ + A AGSGKT ++ ++ L+ +PS++L +T T AA Sbjct: 6 LNNKQSEALLKTE--GPVLILAGAGSGKTKVVTNKIAYLIDEKRVYPSSILAITFTNKAA 63 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV ++I + + T Sbjct: 64 NEMKERVAKLIDV--------------------------------------NVDAMWIGT 85 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEELKK 190 H+ C I+++ + +S+F+I D + +I + K L M N + K Sbjct: 86 FHSICLRILRRNIERIDYSSNFSIYDRDDQNTVIRDCIKELNLNKEMYKNKSIIAK 141 >gi|58336855|ref|YP_193440.1| ATP-dependent helicase [Lactobacillus acidophilus NCFM] gi|227903414|ref|ZP_04021219.1| ATP-dependent helicase [Lactobacillus acidophilus ATCC 4796] gi|58254172|gb|AAV42409.1| ATP-dependent helicase [Lactobacillus acidophilus NCFM] gi|227868890|gb|EEJ76311.1| ATP-dependent helicase [Lactobacillus acidophilus ATCC 4796] Length = 746 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 39/162 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L + ++ V A AGSGKT +L +R+ L+ N P +L +T T A Sbjct: 7 LANLNPQQKKAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENNVAPWNILAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM R +++ + + + Sbjct: 67 ASEMREREQDLLGPAAE--------------------------------------NIWMS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA C I+++ + N +F+IAD + L++ +K Sbjct: 89 TFHALCVRILRRDADKINYDHNFSIADSAEQLTLVKHIEKDL 130 >gi|325269864|ref|ZP_08136474.1| helicase [Prevotella multiformis DSM 16608] gi|324987837|gb|EGC19810.1| helicase [Prevotella multiformis DSM 16608] Length = 1099 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 6/168 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95 A+AGSGKT L + L++ N +L +T T A EM R+L + +H LSD Sbjct: 10 ASAGSGKTFTLASEYIALVVKNPQDYKKILAVTFTNKATQEMKIRILSQLYGIAHGLSDS 69 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + + P + A L + +VQTI AF +++++ E N+T+ Sbjct: 70 QAYFDQVVKKTGFPETTIREHAAEALSLLTHHYNEFRVQTIDAFFQSVLRNLAHELNLTA 129 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + I + + +A + S+ + EE+ K + ++ + ++D Sbjct: 130 NLRIDLNDDQVE--AQAVDEMINSL--EEGEEVLKWIRDYIDKNIEDD 173 >gi|299136332|ref|ZP_07029516.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8] gi|298602456|gb|EFI58610.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX8] Length = 982 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 44/169 (26%) Query: 15 DLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL++ +Q + + A AGSGKT ++ R+ L+ A P ++L +T T Sbjct: 45 DLLANMNPQQREGITSVDGPVLLLAGAGSGKTRVITHRIAYLIKERGAAPDSILAVTFTN 104 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM+ RV +I+ + S + Sbjct: 105 KAAKEMAERVEKILGHSTLASPTLA----------------------------------- 129 Query: 133 VQTIHAFCEAIMQQFPLEA-----NITSHFAIADEEQSKKLIEEAKKST 176 T H+FC ++++ +T FAI DE + ++++A K Sbjct: 130 --TFHSFCVRVLRRDIEALRVGNVGLTRSFAIYDENDQQAVVKQALKRL 176 >gi|83942766|ref|ZP_00955227.1| DNA helicase II, putative [Sulfitobacter sp. EE-36] gi|83846859|gb|EAP84735.1| DNA helicase II, putative [Sulfitobacter sp. EE-36] Length = 806 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 33/193 (17%), Positives = 71/193 (36%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ + + D + A AG+GKT L R++ L+ A P+ +L +T T Sbjct: 27 YLDGLNPAQRAAVEQMD--GPVLMLAGAGTGKTKALTARIVHLMNTGRARPNEILAVTFT 84 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM +RV ++ G Sbjct: 85 NKAAREMKNRVGHMLGQSIE-------------------------------------GMP 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T HA C ++++ + S+F I D + +L+++ + + +D+ + Sbjct: 108 WLGTFHAICVKLLRRHAELVGLKSNFTILDTDDQLRLLKQ----LIKAEGIDDKRWPARL 163 Query: 192 FYEILEISNDEDI 204 +++ + + Sbjct: 164 LSGVIDGWKNRAL 176 >gi|124266334|ref|YP_001020338.1| ATP-dependent DNA helicase UvrD [Methylibium petroleiphilum PM1] gi|124259109|gb|ABM94103.1| ATP-dependent DNA helicase UvrD [Methylibium petroleiphilum PM1] Length = 788 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 69/196 (35%), Gaps = 44/196 (22%) Query: 12 ETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 E L+ EQL A P +A + A AGSGKT +L R+ L+ P+ ++ +T Sbjct: 14 EAAGLLRHLNPEQLAAVTLPAGNALILAGAGSGKTRVLTTRIAWLVQTGQVSPAGVMAVT 73 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ ++ P Sbjct: 74 FTNKAAKEMLTRLSTLLPV--------------------------------------NPR 95 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G+ + T H C ++ A + F I D + S A K + ++ LD + Sbjct: 96 GMWIGTFHGLCNRFLRAHWKLAGLPQGFQILDAQDSVS----AVKRIVKAMKLDEERYIP 151 Query: 190 KAFYEILEISNDEDIE 205 K + + ++ + Sbjct: 152 KQCAWFIAGAKEDGLR 167 >gi|319407484|emb|CBI81134.1| DNA helicase II [Bartonella sp. 1-1C] Length = 815 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 71/198 (35%), Gaps = 44/198 (22%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q ++ ++ ++ + V A AG+GKT +L R+ +L AHP +L Sbjct: 37 QHKPNYLEKLN--PEQKQAVINTEGPVLVLAGAGTGKTRVLTTRISHILHLGLAHPKQIL 94 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ E++ Sbjct: 95 AVTFTNKAAHEMKIRIGELVGETVENMP-------------------------------- 122 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + T H+ I+++ + S+F I D + +L+++ + + LD+ Sbjct: 123 -----WLGTFHSTGAKILRRHAELIGLKSNFTILDRDDVIRLLKQ----LIQAEALDDKR 173 Query: 187 ELKKAFYEILEISNDEDI 204 + +++ ++ + Sbjct: 174 WPARNLAMMIDSWKNQGL 191 >gi|317165456|gb|ADV08997.1| hypothetical protein NGTW08_2046 [Neisseria gonorrhoeae TCDC-NG08107] Length = 735 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|315224086|ref|ZP_07865926.1| ATP-dependent DNA helicase PcrA [Capnocytophaga ochracea F0287] gi|314945819|gb|EFS97828.1| ATP-dependent DNA helicase PcrA [Capnocytophaga ochracea F0287] Length = 789 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 52/164 (31%), Gaps = 37/164 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +L S ++ V A AGSGKT +L R+ L+ +L LT T Sbjct: 5 LKELESLNAPQRAAVLQKDGPIIVIAGAGSGKTRVLTYRIANLMREGVDAFNILALTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ L Sbjct: 65 KAANEMKKRIASLVGN-------------------------------------NEAKNLW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ + +F I D + S++LI K Sbjct: 88 MGTFHSVFAKILRIEADKLGYPQNFTIYDTQDSQRLINGIIKEM 131 >gi|293365449|ref|ZP_06612158.1| ATP-dependent exonuclease RexA [Streptococcus oralis ATCC 35037] gi|291315817|gb|EFE56261.1| ATP-dependent exonuclease RexA [Streptococcus oralis ATCC 35037] Length = 1217 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 79/223 (35%), Gaps = 31/223 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTAGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + KI + +D+ +HL + + P + T+ +F Sbjct: 89 ERLEK------------------KISQQIQEGNDVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIA-DEEQSKKLIEEAKKSTLASIML-DNNEELKKAFYEILE 197 + + + +I +F I +E + L E +N E+ + Sbjct: 130 TQKFLGKHGYLIDIAPNFRILQNESEQLILKNEVFHQVFEDHYQGENKEKFSRLVKNFAG 189 Query: 198 ISNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 DE R + K+ F S +K + S Sbjct: 190 RGKDER---------GLRQQVYKIYDFLQSTSSPQKWLNGSFL 223 >gi|228471345|ref|ZP_04056146.1| ATP-dependent DNA helicase PcrA [Porphyromonas uenonis 60-3] gi|228306846|gb|EEK15959.1| ATP-dependent DNA helicase PcrA [Porphyromonas uenonis 60-3] Length = 778 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 37/164 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL + +++++ A V A AGSGKT ++ ++ L+ +P L LT T Sbjct: 1 MVDLTALNEAQRVAVVYNEGPALVIAGAGSGKTRVITYKLAHLVDQGWNPQRLYALTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV E++ L+ Sbjct: 61 KAAGEMRSRVSEMLGEGI-------------------------------------AYRLR 83 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I++++ + ++I D +K LI K Sbjct: 84 MGTFHSICGRILRRYAPLLGYSQDYSIYDTSDTKALIRNCIKEL 127 >gi|329118654|ref|ZP_08247358.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Neisseria bacilliformis ATCC BAA-1200] gi|327465389|gb|EGF11670.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Neisseria bacilliformis ATCC BAA-1200] Length = 805 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 62/172 (36%), Gaps = 40/172 (23%) Query: 7 FQEHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPST 64 F S + L+ EQL A P +SA V A AGSGKT +L R+ LL + A + Sbjct: 74 FSTESPSSALLQGLNPEQLAAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSSQASVHS 133 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 ++ +T T AA EM R+ +I Sbjct: 134 IMAVTFTNKAAKEMQTRLGAMIPV------------------------------------ 157 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T H C ++ +A + + F I D LI+ K+ Sbjct: 158 --NIRAMWLGTFHGLCHRFLRLHHRDAGLPASFQILDSGDQLSLIKRLLKTL 207 >gi|291456654|ref|ZP_06596044.1| ATP-dependent DNA helicase PcrA [Bifidobacterium breve DSM 20213] gi|291381931|gb|EFE89449.1| ATP-dependent DNA helicase PcrA [Bifidobacterium breve DSM 20213] Length = 901 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 40/158 (25%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +L+ +Q A ++ + A AGSGKT +L +R+ +L A PS +L +T T Sbjct: 24 ELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTN 83 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + + Sbjct: 84 KAAVEMRERLGSLIGPVAQ--------------------------------------RMW 105 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 V T H+ C I+++ + S F+I D S++L++ Sbjct: 106 VSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERLVK 143 >gi|116328207|ref|YP_797927.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330931|ref|YP_800649.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120951|gb|ABJ78994.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124620|gb|ABJ75891.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 730 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 LI + ++ T + A AGSGKT ++ R+ LL+ + + LT T AA Sbjct: 6 LIGLNEEQKKAVLQITGPVLILAGAGSGKTRVITHRIANLLVNHG-IDRICALTFTNKAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM RV ++ P L+++T Sbjct: 65 AEMVERVKNLVPFL--------------------------------------PTNLQIKT 86 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ C I+++ S F + D + L+++ K Sbjct: 87 FHSLCLYILRREAFFFGFDSAFTVYDTTLQESLLKQVVKDL 127 >gi|256820896|ref|YP_003142175.1| UvrD/REP helicase [Capnocytophaga ochracea DSM 7271] gi|256582479|gb|ACU93614.1| UvrD/REP helicase [Capnocytophaga ochracea DSM 7271] Length = 789 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 52/164 (31%), Gaps = 37/164 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +L S ++ V A AGSGKT +L R+ L+ +L LT T Sbjct: 5 LKELESLNAPQRAAVLQKDGPIIVIAGAGSGKTRVLTYRIANLMREGVDAFNILALTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ L Sbjct: 65 KAANEMKKRIASLVGN-------------------------------------NEAKNLW 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ + +F I D + S++LI K Sbjct: 88 MGTFHSVFAKILRIEADKLGYPQNFTIYDTQDSQRLINGIIKEM 131 >gi|325203353|gb|ADY98806.1| DNA helicase II [Neisseria meningitidis M01-240355] Length = 735 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPVDVR--------------------------------------AMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|262047039|ref|ZP_06019998.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus MV-3A-US] gi|293381896|ref|ZP_06627864.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus 214-1] gi|260572616|gb|EEX29177.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus MV-3A-US] gi|290921543|gb|EFD98577.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus 214-1] Length = 748 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 84/224 (37%), Gaps = 46/224 (20%) Query: 17 ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 ++ +Q A + T V A AGSGKT +L +R+ L+ N P +L +T T A Sbjct: 7 LAGLNPQQKEAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM R +++ + + + Sbjct: 67 ASEMREREQKLLGPAA--------------------------------------NDIWMS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HA C I+++ + +F+IAD + L++ +K + + + Sbjct: 89 TFHALCVRILRRDADKIGYGHNFSIADSAEQLTLVKHIEKDL---NINPKMYDPRGILAA 145 Query: 195 ILEISND-EDIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 I ND D E + +S + A K+ + L R +I++ Sbjct: 146 ISNGKNDLLDPEAFMQSALSPFEKMAAKVYEEYQRRLRRDQIMD 189 >gi|118471354|ref|YP_889771.1| ATP-dependent DNA helicase PcrA [Mycobacterium smegmatis str. MC2 155] gi|118172641|gb|ABK73537.1| ATP-dependent DNA helicase PcrA [Mycobacterium smegmatis str. MC2 155] Length = 783 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 42/163 (25%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 E + +D ++ + + +L + A AGSGKT +L +R+ LL +L Sbjct: 12 ETDQLLDGLNPQQRQAVL--HEGSPLLIVAGAGSGKTAVLTRRIAYLLAEREVGVGQVLA 69 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAAEM RV++++ + Sbjct: 70 ITFTNKAAAEMRERVVQLVGPRAK------------------------------------ 93 Query: 128 PGGLKVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLI 169 + V T H+ C I++ Q L + S+F+I D + S++L+ Sbjct: 94 --AMWVSTFHSTCVRILRNQASLLPGLNSNFSIYDSDDSRRLL 134 >gi|9257172|pdb|2PJR|A Chain A, Helicase Product Complex gi|9257173|pdb|2PJR|F Chain F, Helicase Product Complex Length = 548 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 39/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L K +Q + A AGSGKT +L R+ L+ + P +L +T T A Sbjct: 9 LAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ + + + Sbjct: 69 AREMRERVQSLLGGAAE--------------------------------------DVWIS 90 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ C I+++ I +F+I D +++ K Sbjct: 91 TFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKE 131 >gi|217967779|ref|YP_002353285.1| UvrD/REP helicase [Dictyoglomus turgidum DSM 6724] gi|217336878|gb|ACK42671.1| UvrD/REP helicase [Dictyoglomus turgidum DSM 6724] Length = 625 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 39/165 (23%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D +++ EQL A + R + A AGSGKT ++ ++ L+ N A P ++ LT T Sbjct: 1 MDFLNELNKEQLEAVFEIERPVLILAGAGSGKTRVITYKIAYLIKNNFAKPENIVALTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ ++ + Sbjct: 61 NKAAEEMKRRIDNLLG-------------------------------------VKNVDKV 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H F +++ F N+ +F I DE + LI++ K Sbjct: 84 WAGTFHGFGLYLLKNFGRYWNLCPNFVIYDENDQEDLIKDILKDL 128 >gi|87311977|ref|ZP_01094086.1| ATP-dependent DNA helicase [Blastopirellula marina DSM 3645] gi|87285281|gb|EAQ77206.1| ATP-dependent DNA helicase [Blastopirellula marina DSM 3645] Length = 701 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 57/163 (34%), Gaps = 38/163 (23%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 D +S QL A + + V A AGSGKT ++ R+ L+ PS +L +T T Sbjct: 36 DPVSGLNQAQLDAVNTLSGPMLVLAGAGSGKTRVVTFRIANLIKHGVRPSRILAVTFTNK 95 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R L ++ + V Sbjct: 96 AAAEMRERALGLLGKKATEQPV-------------------------------------V 118 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ C ++++ FAI D + +I A + Sbjct: 119 STFHSHCVRVLRRHINRLGYPLKFAIYDRGDQESVIRAALREI 161 >gi|89891413|ref|ZP_01202919.1| DNA helicase [Flavobacteria bacterium BBFL7] gi|89516444|gb|EAS19105.1| DNA helicase [Flavobacteria bacterium BBFL7] Length = 775 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 75/216 (34%), Gaps = 47/216 (21%) Query: 15 DLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 D ISQ Q + V A AGSGKT +L R+ L+ +L LT T Sbjct: 3 DYISQLNDAQREPVLQKEGAMIVIAGAGSGKTRVLTLRIAYLMQQGVDAFNILSLTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ +I+ + L + Sbjct: 63 AAREMKKRIADIVGQSEAKN-------------------------------------LWM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL----- 188 T H+ +++ + S+F I D + S++L+ K + +++ Sbjct: 86 GTFHSVFARLLRMEADKLGYPSNFTIYDSQDSQRLVSAIIKEMGLDKDVYKYKQIASRIS 145 Query: 189 --KKAFYEILEISNDEDIETLISDIISNRTALKLIF 222 K + + ND D++ +D ++ R I+ Sbjct: 146 SMKNSLITVRAYFNDADLQE--ADAMARRPRFGDIY 179 >gi|309775326|ref|ZP_07670334.1| exonuclease RexA [Erysipelotrichaceae bacterium 3_1_53] gi|308916908|gb|EFP62640.1| exonuclease RexA [Erysipelotrichaceae bacterium 3_1_53] Length = 281 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 79/197 (40%), Gaps = 31/197 (15%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHR 81 + R+ VSA+AGSGKT +L+ R++ L++ + ++L +T T+AAA EM R Sbjct: 2 QLKAIQTKERNILVSASAGSGKTTVLIARLMDLVMKDHVSIDSILAMTFTEAAANEMKKR 61 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + + + + + + + L + + TIH+FC Sbjct: 62 LATELQSAML-------------------TAQTEEEKAYITRQLTSIQTAHISTIHSFCL 102 Query: 142 AIMQQFPLEANITSH--FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI---- 195 +I+Q++ + +I D ++A L + F ++ Sbjct: 103 SIIQEYYYILGLDPQRIKSIMDNGTMVLFQQQA----LEEAFAKQYQLQDPVFLQLCQMF 158 Query: 196 -LEISNDEDIETLISDI 211 ND+ + ++I ++ Sbjct: 159 SARAENDDALRSMIMNL 175 >gi|220920723|ref|YP_002496024.1| UvrD/REP helicase [Methylobacterium nodulans ORS 2060] gi|219945329|gb|ACL55721.1| UvrD/REP helicase [Methylobacterium nodulans ORS 2060] Length = 816 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 42/186 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 ++ V A AG+GKT +L R+ L+ A P +L +T T AA EM Sbjct: 73 NAEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIAIGRARPFDILAVTFTNKAAREM 132 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +I + G + T HA Sbjct: 133 KERIGALIGSAGE-------------------------------------GMPWLGTFHA 155 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + S F I + +L+++ + + +D ++ + ++ Sbjct: 156 IGTKILRRHAELVGLKSDFTILGTDDQLRLLKQ----VIEAANVDEKRWPARSLAQAIDG 211 Query: 199 SNDEDI 204 + + Sbjct: 212 WKNRGL 217 >gi|126461535|ref|YP_001042649.1| UvrD/REP helicase [Rhodobacter sphaeroides ATCC 17029] gi|126103199|gb|ABN75877.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides ATCC 17029] Length = 786 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 45/193 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ID ++ + +LA D + A AG+GKT L R++ LL + A P+ +L +T T Sbjct: 31 YIDELNPAQRAAVLALD--GPVLMLAGAGTGKTKALTARIVHLLDSGKARPNEILAVTFT 88 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ + Sbjct: 89 NKAAREMKDRVARLLGQVEGMP-------------------------------------- 110 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T HA I+++ + S+F I D + +L+++ + + +D + Sbjct: 111 WMGTFHAISVKILRRHAELVGLKSNFTILDTDDQLRLLKQ----LIVAANIDEKRWPARM 166 Query: 192 FYEILEISNDEDI 204 +++ + Sbjct: 167 LAGLIDHWKNRAW 179 >gi|304405679|ref|ZP_07387338.1| ATP-dependent DNA helicase PcrA [Paenibacillus curdlanolyticus YK9] gi|304345718|gb|EFM11553.1| ATP-dependent DNA helicase PcrA [Paenibacillus curdlanolyticus YK9] Length = 801 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 52/157 (33%), Gaps = 39/157 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 +Q + A AGSGKT +L R+ L+ P ++L +T T AA EM Sbjct: 16 NPQQQAAVQATEGPLLIMAGAGSGKTRVLTHRIAYLIEKKRVAPWSILAITFTNKAAREM 75 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + + V T H+ Sbjct: 76 QDRVAKLVGP--------------------------------------SGSDIWVSTFHS 97 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 C I+++ TS F+I D +I K Sbjct: 98 MCVRILRKDISRIGFTSSFSILDSGDQLSVIRTIMKE 134 >gi|182677780|ref|YP_001831926.1| UvrD/REP helicase [Beijerinckia indica subsp. indica ATCC 9039] gi|182633663|gb|ACB94437.1| UvrD/REP helicase [Beijerinckia indica subsp. indica ATCC 9039] Length = 800 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 68/194 (35%), Gaps = 44/194 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ + + A + V A AG+GKT +L R+ +L A +L +T T Sbjct: 41 YLDGLNPEQRRAVEALE--GPVLVLAGAGTGKTRVLTTRIAHILATGRARAHEILAVTFT 98 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ + G Sbjct: 99 NKAAREMKERVAALVGPVAE-------------------------------------GMP 121 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T HA I+++ + S F I D + +L+++ L + +D ++ Sbjct: 122 WLGTFHAISTKILRRHAELVGLQSTFTILDTDDQIRLLKQ----VLQAANIDEKRWPARS 177 Query: 192 FYEILEISNDEDIE 205 ++ + ++ Sbjct: 178 LSYQIDAWKNRGLD 191 >gi|324993214|gb|EGC25134.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK405] gi|327461484|gb|EGF07815.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1] Length = 762 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 4 LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R A L + Sbjct: 62 NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C I+++ +F I D + + L+ K L ++ LD + ++A Sbjct: 84 -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138 Query: 192 FYEILEISNDEDIET 206 + + ++ I+ Sbjct: 139 ILGTISNAKNDLIDE 153 >gi|299820618|ref|ZP_07052508.1| ATP-dependent DNA helicase PcrA [Listeria grayi DSM 20601] gi|299818113|gb|EFI85347.1| ATP-dependent DNA helicase PcrA [Listeria grayi DSM 20601] Length = 730 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 48/157 (30%), Gaps = 39/157 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ + A AGSGKT +L R+ L+ P +L +T T AA EM Sbjct: 13 NPEQRKAVETTEGPLLIMAGAGSGKTRVLTHRIAYLVREKGVSPYNILAITFTNKAAREM 72 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ + + T H+ Sbjct: 73 KARVGSLMGGEGE--------------------------------------SIWISTFHS 94 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 C I+++ +F I D +I+ K Sbjct: 95 MCVRILRRDIDRIGYERNFTILDSGDQLSVIKGILKD 131 >gi|148258686|ref|YP_001243271.1| ATP-dependent DNA helicase Rep [Bradyrhizobium sp. BTAi1] gi|146410859|gb|ABQ39365.1| ATP-dependent DNA helicase, Rep family [Bradyrhizobium sp. BTAi1] Length = 686 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 36/167 (21%) Query: 16 LISQTKSEQLLASD-------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 + EQ A + P + A AGSGKT+ L RV LL+ A P +L + Sbjct: 8 YLDDLNPEQRRAVEHGGACAAPGPPLLIIAGAGSGKTNTLAHRVAHLLVNGADPRRILLM 67 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T ++ AAAEMS RV I E ++A +T Sbjct: 68 TFSRRAAAEMSRRVERIARKVLGGQAEAITAGLT-------------------------- 101 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H +++ + I + F I D E S L+ + Sbjct: 102 ---WAGTFHGLGARMLRDYAERIGIDAVFTIHDREDSADLMNLVRHE 145 >gi|94984975|ref|YP_604339.1| UvrD/REP helicase [Deinococcus geothermalis DSM 11300] gi|94555256|gb|ABF45170.1| UvrD/REP helicase [Deinococcus geothermalis DSM 11300] Length = 741 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 58/159 (36%), Gaps = 40/159 (25%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L ++ A+ T A V A AGSGKT LV R+ L+ P +L +T T A Sbjct: 10 LAQLNPNQAQAANHYTGPALVIAGAGSGKTRTLVYRIAHLIGHYGVDPGEILAVTFTNKA 69 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM R ARHL +E L + Sbjct: 70 AAEMRER-----------------------------------ARHL----VEGADRLWMS 90 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T H+ I++ + + F I D++ +++E Sbjct: 91 TFHSAGVRILRAYGEHIGLKRGFVIYDDDDQLDILKEIM 129 >gi|294778328|ref|ZP_06743753.1| putative ATP-dependent helicase PcrA [Bacteroides vulgatus PC510] gi|294447835|gb|EFG16410.1| putative ATP-dependent helicase PcrA [Bacteroides vulgatus PC510] Length = 796 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 55/163 (33%), Gaps = 39/163 (23%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + + + Q A + V A AGSGKT +L ++ LL P ++L LT T Sbjct: 3 NYLEELNESQRNAVLYNEGPSLVIAGAGSGKTRVLTYKIAYLLERGYTPWSILALTFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ + + L + Sbjct: 63 AAREMKERIARQVG--------------------------------------DQARYLWM 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ TS+F I D SK LI+ K Sbjct: 85 GTFHSIFSRILRCESQSIGFTSNFTIYDSSDSKSLIKSIVKEM 127 >gi|192291516|ref|YP_001992121.1| UvrD/REP helicase [Rhodopseudomonas palustris TIE-1] gi|192285265|gb|ACF01646.1| UvrD/REP helicase [Rhodopseudomonas palustris TIE-1] Length = 687 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 58/169 (34%), Gaps = 32/169 (18%) Query: 11 SETIDLISQTKS---EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 + +D ++ + E P V A AGSGKT+ L RV L++ A P +L Sbjct: 5 APILDGLNPEQRCAVEHGAGPAPCPPLLVIAGAGSGKTNTLAHRVAHLVVGGADPYRILL 64 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T ++ AAAEM+ RV I LS + Sbjct: 65 MTFSRRAAAEMTRRVERIARKVLGDRASALSGGLH------------------------- 99 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++ + + F I D E S L+ + Sbjct: 100 ----WAGTFHGIGARLLRDYAERIGLDPGFTIHDREDSADLMNLVRHDL 144 >gi|169349910|ref|ZP_02866848.1| hypothetical protein CLOSPI_00649 [Clostridium spiroforme DSM 1552] gi|169293478|gb|EDS75611.1| hypothetical protein CLOSPI_00649 [Clostridium spiroforme DSM 1552] Length = 1236 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 57/227 (25%), Positives = 92/227 (40%), Gaps = 33/227 (14%) Query: 17 ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 IS Q A S VSA AGSGKT ILV R+L L+ N + LL LT T AA Sbjct: 5 ISPLNDGQYEAVITRNCSILVSAPAGSGKTKILVNRILALIEEENYNVDELLVLTFTNAA 64 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ + D+ L +IT + + K + LL + Sbjct: 65 ALEMKQRLQVAL-------DQRLQDDITNEL-----SNHLLKQKQLLPKAY-------IT 105 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 H FC +++Q+ I S F I + + + + + + D+ F E Sbjct: 106 NFHGFCSTLLKQYGYLIGINSKFDICTDPTT--IKHQILDQCIEKWINDDE------FME 157 Query: 195 ILEIS-NDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWS 240 + + + ++ + I+ I+ F+ Y+ IEK+++ Sbjct: 158 FINLYFPEYYFKSFKNAILKFENLSNTIYNFYDYINE---IEKNIYD 201 >gi|308071013|ref|YP_003872618.1| ATP-dependent DNA helicase pcrA [Paenibacillus polymyxa E681] gi|305860292|gb|ADM72080.1| ATP-dependent DNA helicase pcrA [Paenibacillus polymyxa E681] Length = 774 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 45/192 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 E + ++ + + + A + + A AGSGKT +L R+ L+ P +L +T Sbjct: 8 EAVARLNPPQRQAVEAVE--GPLLIMAGAGSGKTRVLTHRIAYLIATRKTAPWGILAITF 65 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV ++I Sbjct: 66 TNKAAREMQDRVSKLIGPQGR--------------------------------------D 87 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + V T H+ C I+++ S+F+I D +I +S + + +D + K Sbjct: 88 VWVSTFHSMCVRILRRDIERIGFISNFSILDSTDQLSVI----RSCMKDLNIDTKKFEPK 143 Query: 191 AFYEILEISNDE 202 A ++ + +E Sbjct: 144 AVQSMMSTAKNE 155 >gi|148985758|ref|ZP_01818886.1| exonuclease RexA [Streptococcus pneumoniae SP3-BS71] gi|147922062|gb|EDK73185.1| exonuclease RexA [Streptococcus pneumoniae SP3-BS71] gi|301800092|emb|CBW32693.1| putative ATP-dependent exonuclease subunit A [Streptococcus pneumoniae OXC141] Length = 1216 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVELKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L+E + + + + K+ F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLE---NEVFHEVFEAHYQGKQKETFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNSQKWLSDSFL 223 >gi|320529158|ref|ZP_08030250.1| ATP-dependent DNA helicase PcrA [Selenomonas artemidis F0399] gi|320138788|gb|EFW30678.1| ATP-dependent DNA helicase PcrA [Selenomonas artemidis F0399] Length = 747 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 64/191 (33%), Gaps = 44/191 (23%) Query: 14 IDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL +Q + + A AGSGKT +L R+ LL + P +L +T T Sbjct: 1 MDLFQGLNEPQQRAVACLEGPLLIVAGAGSGKTRVLTYRIANLLAHDVPPYRILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV +I +H + Sbjct: 61 KAAREMRDRVDTLIGEAAH--------------------------------------DVW 82 Query: 133 VQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+FC ++ + +F I D SK LI E L + +D A Sbjct: 83 LSTFHSFCARFLRIEIEHLKGYEKNFVIYDAADSKGLIREC----LKELNIDEKHTAPGA 138 Query: 192 FYEILEISNDE 202 + + + Sbjct: 139 VQSHISDAKNN 149 >gi|7414502|emb|CAB86224.1| putative DNA helicase [Prochlorococcus marinus subsp. pastoris str. NATL2] Length = 304 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 66/172 (38%), Gaps = 19/172 (11%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 ++ Q A D A AGSGKT L R+ L+ PS++L +T T Sbjct: 8 FLNGLNEAQSHAVDHFHGPLLAVAGAGSGKTRALTHRIAHLITEYKVDPSSILAVTFTNK 67 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG-LK 132 AA EM R+ ++ + GK +++ R + I L Sbjct: 68 AAREMKDRLELLLAKRLS----------SLTHGKPWTALQVAEQREIRNRIHREISRELW 117 Query: 133 VQTIHAFCEAIMQ----QFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178 + T HA +++ +F + T F+I DE ++ LI+E L Sbjct: 118 IGTFHALFSRLLRFDIDKFKDPEGLTWTKQFSIYDETDAQSLIKEIVTQDLQ 169 >gi|77462643|ref|YP_352147.1| ATP-dependent DNA helicase Rep [Rhodobacter sphaeroides 2.4.1] gi|77387061|gb|ABA78246.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides 2.4.1] Length = 783 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 45/193 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ID ++ + +LA D + A AG+GKT L R++ LL + A P+ +L +T T Sbjct: 28 YIDELNPAQRAAVLALD--GPVLMLAGAGTGKTKALTARIVHLLDSGKARPNEILAVTFT 85 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ + Sbjct: 86 NKAAREMKDRVARLLGQVEGMP-------------------------------------- 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T HA I+++ + S+F I D + +L+++ + + +D + Sbjct: 108 WMGTFHAISVKILRRHAELVGLKSNFTILDTDDQLRLLKQ----LIVAANIDEKRWPARM 163 Query: 192 FYEILEISNDEDI 204 +++ + Sbjct: 164 LAGLIDHWKNRAW 176 >gi|325689990|gb|EGD31994.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK115] Length = 766 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 4 LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R A L + Sbjct: 62 NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C I+++ +F I D + + L+ K L ++ LD + ++A Sbjct: 84 -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138 Query: 192 FYEILEISNDEDIET 206 + + ++ I+ Sbjct: 139 ILGTISNAKNDLIDE 153 >gi|167631048|ref|YP_001681547.1| ATP-dependent DNA helicase pcra [Heliobacterium modesticaldum Ice1] gi|167593788|gb|ABZ85536.1| ATP-dependent DNA helicase pcra [Heliobacterium modesticaldum Ice1] Length = 731 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 65/188 (34%), Gaps = 43/188 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L S ++ + A AGSGKT +L R+ L+ P +L +T T A Sbjct: 6 LHSLNPVQREAVLHQEGPLLLLAGAGSGKTRVLTHRIGHLIEQCRVSPFHILAITFTNKA 65 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM R+ +I +H + V Sbjct: 66 AAEMRERLGRLIGPRAH--------------------------------------DVWVS 87 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C I+++ + F I D + ++L++E L + +D +A Sbjct: 88 TFHSTCMRILRKDGEKLGYDRSFVIYDYDDQQRLLKEC----LKELNIDEKRFKPQAVGA 143 Query: 195 ILEISNDE 202 + + + Sbjct: 144 AISSAKNR 151 >gi|221638499|ref|YP_002524761.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides KD131] gi|221159280|gb|ACM00260.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides KD131] Length = 786 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 45/193 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ID ++ + +LA D + A AG+GKT L R++ LL + A P+ +L +T T Sbjct: 31 YIDELNPAQRAAVLALD--GPVLMLAGAGTGKTKALTARIVHLLDSGKARPNEILAVTFT 88 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ + Sbjct: 89 NKAAREMKDRVARLLGQVEGMP-------------------------------------- 110 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T HA I+++ + S+F I D + +L+++ + + +D + Sbjct: 111 WMGTFHAISVKILRRHAELVGLKSNFTILDTDDQLRLLKQ----LIVAANIDEKRWPARM 166 Query: 192 FYEILEISNDEDI 204 +++ + Sbjct: 167 LAGLIDHWKNRAW 179 >gi|78189378|ref|YP_379716.1| DNA helicase II [Chlorobium chlorochromatii CaD3] gi|78171577|gb|ABB28673.1| ATP-dependent DNA helicase PcrA [Chlorobium chlorochromatii CaD3] Length = 743 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 56/164 (34%), Gaps = 39/164 (23%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 + + Q A + + V A AGSGKT ++ R+ L+ P +L LT T Sbjct: 3 NFLHDLNEVQRSAVEATSGPVMVLAGAGSGKTRVITYRIAHLINNEGIAPRNILALTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ + GL Sbjct: 63 KAAGEMRERVDTLLHHGASR-------------------------------------GLW 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ +++ +F+I D + S+ LI ++ Sbjct: 86 IGTFHSIFARLLRNSIDRIGYDRNFSIFDADDSRSLIRQSMAEL 129 >gi|324990953|gb|EGC22888.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK353] Length = 762 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 4 LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R A L + Sbjct: 62 NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C I+++ +F I D + + L+ K L ++ LD + ++A Sbjct: 84 -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138 Query: 192 FYEILEISNDEDIET 206 + + ++ I+ Sbjct: 139 ILGTISNAKNDLIDE 153 >gi|327459916|gb|EGF06256.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1057] Length = 762 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 4 LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R A L + Sbjct: 62 NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C I+++ +F I D + + L+ K L ++ LD + ++A Sbjct: 84 -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138 Query: 192 FYEILEISNDEDIET 206 + + ++ I+ Sbjct: 139 ILGTISNAKNDLIDE 153 >gi|313896178|ref|ZP_07829731.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 137 str. F0430] gi|312974977|gb|EFR40439.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 137 str. F0430] Length = 747 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 64/191 (33%), Gaps = 44/191 (23%) Query: 14 IDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL +Q + + A AGSGKT +L R+ LL + P +L +T T Sbjct: 1 MDLFQGLNEPQQRAVACLEGPLLIVAGAGSGKTRVLTYRIANLLAHDVPPYRILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV +I +H + Sbjct: 61 KAAREMRDRVDTLIGEAAH--------------------------------------DVW 82 Query: 133 VQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+FC ++ + +F I D SK LI E L + +D A Sbjct: 83 LSTFHSFCARFLRIEIEHLKGYEKNFVIYDAADSKGLIREC----LKELNIDEKHTAPGA 138 Query: 192 FYEILEISNDE 202 + + + Sbjct: 139 VQSHISDAKNN 149 >gi|316934039|ref|YP_004109021.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1] gi|315601753|gb|ADU44288.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1] Length = 687 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 32/169 (18%) Query: 11 SETIDLISQTKS---EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 + +D ++ + E A+ V A AGSGKT+ L RV L++ A P +L Sbjct: 5 APILDGLNPEQRCAVEHGAATASCPPLLVIAGAGSGKTNTLAHRVAHLVVGGADPYRILL 64 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T ++ AAAEM+ RV I LS + Sbjct: 65 MTFSRRAAAEMTRRVERIARKVLGDRASALSGGLH------------------------- 99 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++ + + F I D E S L+ + Sbjct: 100 ----WAGTFHGIGARLLRDYAERIGLDPGFTIHDREDSADLMNLVRHDL 144 >gi|90424242|ref|YP_532612.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18] gi|90106256|gb|ABD88293.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18] Length = 687 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 62/170 (36%), Gaps = 38/170 (22%) Query: 16 LISQTKSEQLLASD---------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66 + EQ LA + P + V A AGSGKT+ L RV LL+ A P LL Sbjct: 5 YLDGLNPEQRLAVEHGIGANTASPAPALLVIAGAGSGKTNTLAHRVAHLLVDGADPRRLL 64 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T ++ AAAEMS RV I+ ++S +T Sbjct: 65 LMTFSRRAAAEMSRRVERIVRKALGAQAGVVSDALT------------------------ 100 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H ++++ + + F I D E S LI + Sbjct: 101 -----WAGTFHGIGARLLREHAEQLGLDPAFTIHDREDSADLINLVRHEL 145 >gi|289670782|ref|ZP_06491857.1| DNA-dependent helicase II [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 728 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 41/169 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67 + S +D ++ + E + A P V A AGSGKT +L+ R+ L + + Sbjct: 2 DVSHLLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM HR + S Sbjct: 60 VTFTNKAAGEMRHRTDLQLRNGSR------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G+ + T H +++ +A + F + D + +L++ +S Sbjct: 84 --GMWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQSL 130 >gi|261879280|ref|ZP_06005707.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270334111|gb|EFA44897.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 1115 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 7/170 (4%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSHL--SD 94 A+AGSGKT L ++LL+ +L +T T A EM R+L + ++ Sbjct: 13 ASAGSGKTFTLAVEYIKLLVQEPQNYRYILAVTFTNKATEEMKRRILGQLYGIANALPDS 72 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E + K +++ + + L IL +V+TI +F + I+ E +T Sbjct: 73 ESYMDALHKAFPAMADRAIRERVKEALGLILHHYHEFRVETIDSFFQRILHNLSRELGLT 132 Query: 155 SHFAI-ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ + ++ + + +A + + +I DN+ L I E NDE Sbjct: 133 ANLQVGLNDFEVES---QAVDNIIDNIQQDNDPLLAWLMDFIKEKVNDEK 179 >gi|323139146|ref|ZP_08074203.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242] gi|322395617|gb|EFX98161.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242] Length = 718 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 61/170 (35%), Gaps = 38/170 (22%) Query: 16 LISQTKSEQLLASD---------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66 + + EQ A + P V A AGSGKT+ L RV L++ A P +L Sbjct: 34 YLEKLNPEQRQAVEHGVWEKRCAPGGPLLVIAGAGSGKTNTLAHRVAHLIVNGADPRRIL 93 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T ++ AAAEM+ RV I S IL Sbjct: 94 LMTFSRRAAAEMTRRVERICAEALGASAGIL----------------------------- 124 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T G T H +++++ + + F I D E + L+ + Sbjct: 125 TNGLAWAGTFHGVGARLLREYAGGIGLNADFTIHDREDAADLMNLVRHEL 174 >gi|327489339|gb|EGF21132.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1058] Length = 762 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 4 LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R A L + Sbjct: 62 NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C I+++ +F I D + + L+ K L ++ LD + ++A Sbjct: 84 -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138 Query: 192 FYEILEISNDEDIET 206 + + ++ I+ Sbjct: 139 ILGTISNAKNDLIDE 153 >gi|229551867|ref|ZP_04440592.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus LMS2-1] gi|258539285|ref|YP_003173784.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus Lc 705] gi|229314811|gb|EEN80784.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus LMS2-1] gi|257150961|emb|CAR89933.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus Lc 705] Length = 750 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 73/194 (37%), Gaps = 44/194 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + ++ ++E +LA++ + A AGSGKT +L R+ L+ N +P +L +T T Sbjct: 6 ALKGMNDKQAEAVLATE--GPVLIMAGAGSGKTRVLTHRIAYLVEEKNVNPWNILAITFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +++ E + Sbjct: 64 NKAAREMRERVGKLVDP-------------------------------------EIARDI 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T HA C I+++ + F IAD + L K LA LD K+ Sbjct: 87 WVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQLTL----VKHILADFNLDPKRYDPKS 142 Query: 192 FYEILEISNDEDIE 205 + + +E I+ Sbjct: 143 ILGAISGAKNELID 156 >gi|261365712|ref|ZP_05978595.1| DNA helicase II [Neisseria mucosa ATCC 25996] gi|288565733|gb|EFC87293.1| DNA helicase II [Neisseria mucosa ATCC 25996] Length = 735 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNLEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPI--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|121533515|ref|ZP_01665343.1| ATP-dependent DNA helicase PcrA [Thermosinus carboxydivorans Nor1] gi|121308074|gb|EAX48988.1| ATP-dependent DNA helicase PcrA [Thermosinus carboxydivorans Nor1] Length = 733 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 57/166 (34%), Gaps = 41/166 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 D +++ + E + V A AGSGKT +L R+ LL P +L +T T Sbjct: 3 NLFDRLNEKQLE--AVTHINGPLLVLAGAGSGKTRVLTCRIAYLLEQGVRPYNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM RV ++ + + Sbjct: 61 NKAAAEMRERVNAMVGIQAK--------------------------------------EV 82 Query: 132 KVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T HAFC ++ + A +F I D + LI+ K Sbjct: 83 WLSTFHAFCARFLRMEIDHLAGFNRNFVIYDASDALALIKSCLKEL 128 >gi|81299966|ref|YP_400174.1| hypothetical protein Synpcc7942_1157 [Synechococcus elongatus PCC 7942] gi|23957809|gb|AAN40822.1| unknown [Synechococcus elongatus PCC 7942] gi|81168847|gb|ABB57187.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 1061 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 86/215 (40%), Gaps = 42/215 (19%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAA 76 EQ A S V+A AG+GKT +L QR L L + P ++ LT T+ AAA Sbjct: 3 LTEEQRQAVQAAGSVAVTAGAGTGKTELLSQRYLWHLQQASESVSPLEIVVLTFTEKAAA 62 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R+ + + K P++SD L ++ T Sbjct: 63 ELRSRIRKAVG------------------NKWPDRSDW----------LAEVEAAQISTF 94 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+ C I ++ P A + F I D+ K + +++ +EL + ++++ Sbjct: 95 HSLCARICREHPAAAGQPADFTILDDLAGKLWQQ--------TVLTAAMQELDPSCFDVM 146 Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231 + S + +L+ ++ + + + S WR Sbjct: 147 DYS---EWRSLLETLLDDPVRSQALLAVESEQWRE 178 >gi|283782302|ref|YP_003373057.1| UvrD/REP helicase [Pirellula staleyi DSM 6068] gi|283440755|gb|ADB19197.1| UvrD/REP helicase [Pirellula staleyi DSM 6068] Length = 669 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 51/157 (32%), Gaps = 37/157 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 +Q V A AGSGKT ++ R+ L+ P +L +T T AAAEM Sbjct: 6 NPEQQEAVDTLRGPLLVLAGAGSGKTRVVTFRMANLIKHGTQPDRILAVTFTNKAAAEMQ 65 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 HR+ ++ S + +V T H+ Sbjct: 66 HRLSALLKTKSKIKP-------------------------------------QVSTFHSH 88 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C ++++ FAI D + L + Sbjct: 89 CVRLLRRHARVLGYPEKFAIYDRGDQESLARGVLRDI 125 >gi|260437266|ref|ZP_05791082.1| ATP-dependent DNA helicase PcrA [Butyrivibrio crossotus DSM 2876] gi|292810576|gb|EFF69781.1| ATP-dependent DNA helicase PcrA [Butyrivibrio crossotus DSM 2876] Length = 748 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 70/211 (33%), Gaps = 45/211 (21%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 + ++ + + A AGSGKT +L R+ L+ + +L +T T AA EM Sbjct: 8 NEQQKEGVFTTEGAVLILAGAGSGKTGVLTHRIAHLIDDLGVNSYNILAITFTNKAAKEM 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ + + T HA Sbjct: 68 KERVDRLVGMGA--------------------------------------DSAWIMTFHA 89 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C I++++ ++F I D + K +I K L LD + + ++ Sbjct: 90 ACVRILRRYICRIGYDNNFTIYDTDDQKSVI----KDILKRKNLDPKQYKDRTILSVISN 145 Query: 199 SNDEDI--ETLISDIISNRTALKLIFFFFSY 227 + D I + + N +K + Y Sbjct: 146 AKDNLISPDDMYQSSGGNYNTMKTAEIYREY 176 >gi|198284778|ref|YP_002221099.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666705|ref|YP_002427463.1| DNA helicase II [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249299|gb|ACH84892.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518918|gb|ACK79504.1| DNA helicase II [Acidithiobacillus ferrooxidans ATCC 23270] Length = 709 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 63/187 (33%), Gaps = 42/187 (22%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + + + P+ A V A AGSGKT +L R+ LL + +P +L +T T AA Sbjct: 6 ALNPRQMEAVTLPSGPALVLAGAGSGKTRVLTSRIAHLLEGDVYPGAILAVTFTNKAARA 65 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ ++ L + T H Sbjct: 66 MRGRLDGMVAM--------------------------------------DLRALWMGTFH 87 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 +++ + + F + D + S++L+ + + +D + +A + Sbjct: 88 GIAHRLLRMHHEVLGLPADFQVLDADDSQRLL----RRIMREAQMDEKQWPPRAMAGRIG 143 Query: 198 ISNDEDI 204 DE Sbjct: 144 RWKDEGW 150 >gi|144575164|gb|AAZ43952.2| atp-dependent helicase [Mycoplasma synoviae 53] Length = 734 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 38/161 (23%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 DL+ +Q A + S + A AG+GKT +L +++L L+L PS +L +T T Sbjct: 8 DLLDDLNEKQREAVEYFDSHLRIIAGAGTGKTKVLTRKILYLILEKKVDPSKILAVTFTN 67 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ N K + L Sbjct: 68 KAAKEMKDRI---------------------------NSKYYDKQKVLFE---------N 91 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 V T+H+FC +++++ + +F I DE K+++++ Sbjct: 92 VFTLHSFCAQVLRKYINLIGFSRNFPILDELDKKQVLQDLY 132 >gi|329767008|ref|ZP_08258536.1| hypothetical protein HMPREF0428_00233 [Gemella haemolysans M341] gi|328837733|gb|EGF87358.1| hypothetical protein HMPREF0428_00233 [Gemella haemolysans M341] Length = 728 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++ + QL A + V A AGSGKT +L R+ L+ N S +L +T T Sbjct: 1 MNFVQNMNDNQLKAILKTDGAVMVIAGAGSGKTRVLTNRIAYLIAEKNVLESNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ ET + Sbjct: 61 NKAAKEMKERIYALVG--------------------------------------ETSKYI 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I++Q +F I D + K +I+ K+ Sbjct: 83 WINTFHSMCVRILRQHIELLGYNKNFTILDTSEQKSIIKTIVKNL 127 >gi|327469639|gb|EGF15108.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK330] Length = 762 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 4 LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R A L + Sbjct: 62 NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C I+++ +F I D + + L+ K L ++ LD + ++A Sbjct: 84 -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138 Query: 192 FYEILEISNDEDIET 206 + + ++ I+ Sbjct: 139 ILGTISNAKNDLIDE 153 >gi|325129035|gb|EGC51885.1| DNA helicase II [Neisseria meningitidis N1568] Length = 735 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDGGDQLSLIKRLLKSL 134 >gi|238926784|ref|ZP_04658544.1| ATP-dependent DNA helicase [Selenomonas flueggei ATCC 43531] gi|238885316|gb|EEQ48954.1| ATP-dependent DNA helicase [Selenomonas flueggei ATCC 43531] Length = 746 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 77/230 (33%), Gaps = 52/230 (22%) Query: 14 IDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL+ +Q + + A AGSGKT +L R+ LL P +L +T T Sbjct: 1 MDLMQGLNEPQQRAVACLQGPLLIVAGAGSGKTRVLTFRIANLLEHGVPPYRILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV +I + + Sbjct: 61 KAAREMRERVDTLIGDAAQ--------------------------------------DVW 82 Query: 133 VQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+FC +++ + +F I D SK LI E L + +D A Sbjct: 83 LSTFHSFCARLLRMELEHYGRYAKNFVIYDAADSKGLIREC----LKELNIDEKHTAPGA 138 Query: 192 FYEILEISNDEDIETLISDIISNRTAL------KLIFFFFSYLWRRKIIE 235 + + + ++ ++ + T K+ + S L ++ Sbjct: 139 VQAHISDAKNRLLD--VAAFTAQATDFFAEQVAKIYALYQSKLQENNALD 186 >gi|154252878|ref|YP_001413702.1| UvrD/REP helicase [Parvibaculum lavamentivorans DS-1] gi|154156828|gb|ABS64045.1| UvrD/REP helicase [Parvibaculum lavamentivorans DS-1] Length = 778 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 68/195 (34%), Gaps = 44/195 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 + ++ ++ + E + A D V A AG+GKT +L R+ LL A P +L +T Sbjct: 30 APYLEGLNAEQREAVEALD--GPVLVLAGAGTGKTRVLTTRLAHLLATRKAWPGQILAVT 87 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ +I Sbjct: 88 FTNKAAREMRDRIGALIGGVVEGMQ----------------------------------- 112 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + T HA I+++ A + S F I D + +L+++ + + +D Sbjct: 113 --WLGTFHALGAKILRRHAELAGLRSDFTILDADDQMRLMKQ----IIVAEGIDEKRWPA 166 Query: 190 KAFYEILEISNDEDI 204 + ++ + + Sbjct: 167 RQLASHIDGWKNRGL 181 >gi|328945990|gb|EGG40137.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK1087] Length = 762 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 4 LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R A L + Sbjct: 62 NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C I+++ +F I D + + L+ K L ++ LD + ++A Sbjct: 84 -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138 Query: 192 FYEILEISNDEDIET 206 + + ++ I+ Sbjct: 139 ILGTISNAKNDLIDE 153 >gi|324995484|gb|EGC27396.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK678] Length = 762 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 4 LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R A L + Sbjct: 62 NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C I+++ +F I D + + L+ K L ++ LD + ++A Sbjct: 84 -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138 Query: 192 FYEILEISNDEDIET 206 + + ++ I+ Sbjct: 139 ILGTISNAKNDLIDE 153 >gi|281491616|ref|YP_003353596.1| ATP-dependent DNA helicase II [Lactococcus lactis subsp. lactis KF147] gi|281375334|gb|ADA64847.1| ATP-dependent DNA helicase II [Lactococcus lactis subsp. lactis KF147] Length = 758 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 80/234 (34%), Gaps = 47/234 (20%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + + +++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLQGMNEKQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R A L +T Sbjct: 59 TFTNKAAKEMRER-----------------------------------ALSLTPRAQDTL 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D K L+ K L LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIIDPGDQKSLM----KRILKEANLDPKKWE 135 Query: 189 KKAFYEIL-EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 K + ND E+ S R +++ ++++++ + Sbjct: 136 PKGLLNAISNAKNDLLDESAYEAQTSARHPYEMVVARVYKIYQKELRKAESMDF 189 >gi|74318467|ref|YP_316207.1| ATP-dependent DNA helicase UvrD [Thiobacillus denitrificans ATCC 25259] gi|74057962|gb|AAZ98402.1| ATP-dependent DNA helicase [Thiobacillus denitrificans ATCC 25259] Length = 726 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 58/168 (34%), Gaps = 41/168 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 H +D ++ ++ + P SA + A AGSGKT +L R++ L+ P +L + Sbjct: 8 HQRLLDSLN--PEQRAAVTLPHESALILAGAGSGKTRVLTTRIVWLVQTGQVSPHGILAV 65 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R+ ++ Sbjct: 66 TFTNKAAKEMLTRISAMLPI--------------------------------------NT 87 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G+ V T H +++ EA + F I D I+ K+ Sbjct: 88 RGMWVGTFHGLANRLLRTHWREAGLPQSFQILDASDQLSAIKRLMKAM 135 >gi|323467081|gb|ADX70768.1| ATP-dependent DNA helicase PcrA [Lactobacillus helveticus H10] Length = 753 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 40/162 (24%) Query: 17 ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 ++ +Q A + T V A AGSGKT +L +R+ L+ N P +L +T T A Sbjct: 12 LAGLNPQQKKAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKA 71 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R +++ + + + Sbjct: 72 ANEMREREQKLLGPAAQ--------------------------------------NIWMS 93 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA C I+++ + + +F+IAD + L++ +K Sbjct: 94 TFHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDL 135 >gi|262282913|ref|ZP_06060680.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. 2_1_36FAA] gi|262261165|gb|EEY79864.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. 2_1_36FAA] Length = 762 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 4 LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R A L + Sbjct: 62 NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C I+++ +F I D + + L+ K L ++ LD + ++A Sbjct: 84 -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138 Query: 192 FYEILEISNDEDIET 206 + + ++ I+ Sbjct: 139 ILGTISNAKNDLIDE 153 >gi|241890126|ref|ZP_04777424.1| ATP-dependent helicase PcrA [Gemella haemolysans ATCC 10379] gi|241863748|gb|EER68132.1| ATP-dependent helicase PcrA [Gemella haemolysans ATCC 10379] Length = 727 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 60/165 (36%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++L+ QL A + V A AGSGKT +L R+ L+ N + +L +T T Sbjct: 1 MNLVQNMNDNQLKAILKTEGAVMVIAGAGSGKTRVLTNRIAYLISEKNILENNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ ET + Sbjct: 61 NKAAKEMKERIYALVG--------------------------------------ETSKYI 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I++Q +F I D + K +I+ +S Sbjct: 83 WINTFHSMCVRILRQHIELLGYNKNFTILDTSEQKSIIKNIVRSL 127 >gi|325696764|gb|EGD38652.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK160] Length = 762 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 4 LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R A L + Sbjct: 62 NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C I+++ +F I D + + L+ K L ++ LD + ++A Sbjct: 84 -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138 Query: 192 FYEILEISNDEDIET 206 + + ++ I+ Sbjct: 139 ILGTISNAKNDLIDE 153 >gi|291320248|ref|YP_003515509.1| ATP dependent helicase [Mycoplasma agalactiae] gi|290752580|emb|CBH40552.1| ATP dependent helicase [Mycoplasma agalactiae] Length = 734 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 91/230 (39%), Gaps = 46/230 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + ++ + +++ ++E L D + A AGSGKT +L +++ L+ + P +L Sbjct: 10 QKAKIFESLNEEQTEALYYFD--GPLRIIAGAGSGKTRVLTRKIAYLINVLGISPDHILA 67 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA+EMS RV + Sbjct: 68 VTFTNKAASEMSERVKQ------------------------------------YTNTKFN 91 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G ++ T H+ C I+++ N+ + F I D+ KK++++ K N + Sbjct: 92 KGTAEISTFHSLCARILREEAFHINLKNDFQIIDDNDKKKILKDIYKEHDLVPTDSNFKN 151 Query: 188 LKKAFYEILE--ISNDEDIETLI-----SDIISNRTALKLIFFFFSYLWR 230 L + F + ++DE+I I S+ + + I+ F++ + Sbjct: 152 LTRFFSWLKNKLYASDEEIIDFINSDPESEFYGDGETVVKIYNFYNEQLK 201 >gi|167754673|ref|ZP_02426800.1| hypothetical protein CLORAM_00176 [Clostridium ramosum DSM 1402] gi|167705505|gb|EDS20084.1| hypothetical protein CLORAM_00176 [Clostridium ramosum DSM 1402] Length = 1233 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 24/172 (13%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 I+ ++ + E ++ S VSA AGSGKT ILV R++ L+ + LL LT T Sbjct: 3 INSLNDGQYEAVV--TRGCSILVSAPAGSGKTKILVNRIMALIEDDGYNVDQLLVLTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA EM R+ + DE L +I K P + + K + LL Sbjct: 61 AAALEMKQRLQVAL-------DERLQEDINK-----PLEQHLLKQKQLLPKAY------- 101 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 + H FC +++Q+ N+ S F I + + + + + D Sbjct: 102 ITNFHGFCSTLLKQYGYLINLNSKFDIC--TDPSLIKHQILDNCIETWAEDQ 151 >gi|42527836|ref|NP_972934.1| ATP-dependent DNA helicase UvrD [Treponema denticola ATCC 35405] gi|41818664|gb|AAS12853.1| ATP-dependent DNA helicase, UvrD/Rep family [Treponema denticola ATCC 35405] Length = 745 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 41/160 (25%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 D ++ EQL A S + A AGSGKT ++ ++ L+ N P +L +T T Sbjct: 5 DYLNILNEEQLSAVKHQGSPLLILAGAGSGKTRVITTKIAYLIAEHNIEPERILAVTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EMS R + + Sbjct: 65 KAAKEMSER---------------------------------------ASNLDKRAERAM 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 ++T H+F I++ + A ++ +F I D++ + L+ +A Sbjct: 86 IRTFHSFGAWILRMYAEWAGLSHNFTIYDDDDALSLLTQA 125 >gi|327473788|gb|EGF19206.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK408] Length = 762 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 4 LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R A L + Sbjct: 62 NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C I+++ +F I D + + L+ K L ++ LD + ++A Sbjct: 84 -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138 Query: 192 FYEILEISNDEDIET 206 + + ++ I+ Sbjct: 139 ILGTISNAKNDLIDE 153 >gi|323136051|ref|ZP_08071134.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242] gi|322399142|gb|EFY01661.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242] Length = 778 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 + EQ A + V A AG+GKT L R+ +L L A +L +T T Sbjct: 27 YLEGLNPEQRAAVETLDGPVLVLAGAGTGKTRALTTRIAHILQLGKARAYEILAVTFTNK 86 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++ + + Sbjct: 87 AAREMRERVEALVGEGAQAMQ-------------------------------------WL 109 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T HA IM++ + +F I D + +L+++ L + +D+ +A Sbjct: 110 GTFHAISAKIMRRHAELVGLKPNFTILDTDDQIRLLKQ----VLQAENIDDKRWPARALA 165 Query: 194 EILEISNDEDI 204 ++ + + Sbjct: 166 MRIDGWKNRGL 176 >gi|15673102|ref|NP_267276.1| ATP-dependent helicase PcrA [Lactococcus lactis subsp. lactis Il1403] gi|12724080|gb|AAK05218.1|AE006344_7 ATP-dependent helicase PcrA [Lactococcus lactis subsp. lactis Il1403] gi|326406669|gb|ADZ63740.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Lactococcus lactis subsp. lactis CV56] Length = 758 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 80/234 (34%), Gaps = 47/234 (20%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + + +++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLQGMNEKQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R A L +T Sbjct: 59 TFTNKAAKEMRER-----------------------------------ALSLTPRAQDTL 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D K L+ K L LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIIDPGDQKSLM----KRILKEANLDPKKWE 135 Query: 189 KKAFYEIL-EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 K + ND E+ S R +++ ++++++ + Sbjct: 136 PKGLLNAISNAKNDLLDESAYEAQTSARHPYEMVVARVYKIYQKELRKAESMDF 189 >gi|313890533|ref|ZP_07824161.1| ATP-dependent nuclease subunit A [Streptococcus pseudoporcinus SPIN 20026] gi|313121050|gb|EFR44161.1| ATP-dependent nuclease subunit A [Streptococcus pseudoporcinus SPIN 20026] Length = 1217 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 25/220 (11%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++V+R++ ++ + T T AA E+ Sbjct: 29 TPEQIEAIYCNGQNILVSASAGSGKTFVMVERIIDKVMRGIAIDEMFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + A S + ++ + L L+ + T+ AF Sbjct: 89 ERLEKRFLALIKESSD-------------------AEWKAYLNQQLQGISQADIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 + ++ Q+ I+ F I ++ + +++ ++ + +D+ E L + S Sbjct: 130 TQKLLSQYSYTLGISPKFRIMQDKSEQDILKNRIYESIFANYMDSKESLT-FMKTVKNFS 188 Query: 200 NDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 I+ K+ F S + +EK+ Sbjct: 189 GHRKDSKGFRAIV-----YKIYEFSQSTEDPLEWLEKTFL 223 >gi|261880622|ref|ZP_06007049.1| ATP-dependent DNA helicase [Prevotella bergensis DSM 17361] gi|270332663|gb|EFA43449.1| ATP-dependent DNA helicase [Prevotella bergensis DSM 17361] Length = 847 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 62/164 (37%), Gaps = 39/164 (23%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 + ++Q Q A + V A AG+GKT +L ++ LL P +L LT T Sbjct: 6 EFLAQLNDSQREAVEYCDGPQLVIAGAGAGKTRVLTYKIAWLLEHHGMKPWNILALTFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +++ M +AR+L + Sbjct: 66 KAAKEMKQRIGQLVG--------------------------MERARYL-----------Q 88 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ S F I DE S+ LI+ K+ Sbjct: 89 MGTFHSVFAKILRMEARNVGYGSDFTIYDEMDSRSLIKNIVKAM 132 >gi|150024958|ref|YP_001295784.1| ATP-dependent DNA helicase UvrD [Flavobacterium psychrophilum JIP02/86] gi|149771499|emb|CAL42968.1| ATP-dependent DNA helicase UvrD [Flavobacterium psychrophilum JIP02/86] Length = 777 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 54/157 (34%), Gaps = 37/157 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 +++Q V A AGSGKT +L R+ L+ N +L LT T AA EM Sbjct: 9 NEAQQAPVLQKDGPMIVIAGAGSGKTRVLTVRIANLMSQNVDAFNILALTFTNKAAREMK 68 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ +I+ + L + T H+ Sbjct: 69 KRIADIVGNAEAKN-------------------------------------LWMGTFHSV 91 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 I++ + S+F I D + S +L+ K Sbjct: 92 FARILRSEADKLGYPSNFTIYDAQDSVRLLGAIIKEM 128 >gi|218258215|ref|ZP_03474617.1| hypothetical protein PRABACTJOHN_00271 [Parabacteroides johnsonii DSM 18315] gi|218225664|gb|EEC98314.1| hypothetical protein PRABACTJOHN_00271 [Parabacteroides johnsonii DSM 18315] Length = 1075 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 6/206 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AG+GKTH L L LL +L +T T A EM R+++ + + Sbjct: 7 ASAGAGKTHKLTGEYLTLLFTGPGAFRRILAVTFTNKATDEMKTRIVDELYNLASGRKSD 66 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 E+ +A +LI IL + TI F + M+ F E + Sbjct: 67 Y-VELLTSTYSLTEDQVRKQAAKILIDILHDYSAFNISTIDRFFQQTMRAFTREIGLQGG 125 Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE-TLISDIIS-N 214 + I E + ++ A + L+ + +++L E + E L DI++ + Sbjct: 126 YGI--EMDQELVLTTAIDNLLSDLEKPESKDLLGWLLRFAEDKIENGGEWNLRKDIMALS 183 Query: 215 RTALKLIFFFFSYLWRRKIIEKSLWS 240 R K + FS R I +K Sbjct: 184 REVFKESYKAFSEAVGRDIEDKKALD 209 >gi|199597352|ref|ZP_03210783.1| Superfamily I DNA and RNA helicase [Lactobacillus rhamnosus HN001] gi|199591868|gb|EDY99943.1| Superfamily I DNA and RNA helicase [Lactobacillus rhamnosus HN001] Length = 750 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 73/194 (37%), Gaps = 44/194 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + ++ ++E +LA++ + A AGSGKT +L R+ L+ N +P +L +T T Sbjct: 6 ALKGMNDKQAEAVLATE--GPVLIMAGAGSGKTRVLTHRIAYLVEEKNVNPWNILAITFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +++ E + Sbjct: 64 NKAAREMRERVGKLVDP-------------------------------------EIARDI 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T HA C I+++ + F IAD + L K LA LD K+ Sbjct: 87 WVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQLTL----VKHILADFNLDPKRYDPKS 142 Query: 192 FYEILEISNDEDIE 205 + + +E I+ Sbjct: 143 ILGAISGAKNELID 156 >gi|304389059|ref|ZP_07371104.1| excision endonuclease subunit UvrD [Neisseria meningitidis ATCC 13091] gi|304336989|gb|EFM03178.1| excision endonuclease subunit UvrD [Neisseria meningitidis ATCC 13091] Length = 735 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDGGDQLSLIKRLLKSL 134 >gi|301066102|ref|YP_003788125.1| superfamily I DNA and RNA helicase [Lactobacillus casei str. Zhang] gi|300438509|gb|ADK18275.1| Superfamily I DNA and RNA helicase [Lactobacillus casei str. Zhang] Length = 751 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 74/194 (38%), Gaps = 44/194 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + ++ +SE +LA++ + A AGSGKT +L R+ L+ + +P +L +T T Sbjct: 6 ALKGMNDKQSEAVLATE--GPVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +++ A E + Sbjct: 64 NKAAREMRERVGKLVDA-------------------------------------EIARDI 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T HA C I+++ + F IAD + L K LA LD K+ Sbjct: 87 WVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQLTL----VKHILADFNLDPKRYDPKS 142 Query: 192 FYEILEISNDEDIE 205 + + +E +E Sbjct: 143 ILGAISSAKNELVE 156 >gi|295426521|ref|ZP_06819171.1| ATP-dependent DNA helicase PcrA [Lactobacillus amylolyticus DSM 11664] gi|295063889|gb|EFG54847.1| ATP-dependent DNA helicase PcrA [Lactobacillus amylolyticus DSM 11664] Length = 749 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 62/168 (36%), Gaps = 39/168 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 SE L ++ V A AGSGKT +L +R+ L+ N +P +L + Sbjct: 1 MSEESILAGLNPQQKQAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEKNNVNPWNILAI 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R +++ + Sbjct: 61 TFTNKAANEMREREQKLLGPAAE------------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T HA C I+++ + N + +F+IAD + L++ +K Sbjct: 84 -SIWMSTFHALCVRILRRDADKINYSHNFSIADSAEQLTLVKHIEKDL 130 >gi|237733547|ref|ZP_04564028.1| ATP-dependent deoxyribonuclease subunit A [Mollicutes bacterium D7] gi|229383380|gb|EEO33471.1| ATP-dependent deoxyribonuclease subunit A [Coprobacillus sp. D7] Length = 1233 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 24/172 (13%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 I+ ++ + E ++ S VSA AGSGKT ILV R++ L+ + LL LT T Sbjct: 3 INSLNDGQYEAVV--TRGCSILVSAPAGSGKTKILVNRIMALIEDDGYNVDQLLVLTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA EM R+ + DE L +I K P + + K + LL Sbjct: 61 AAALEMKQRLQVAL-------DERLQEDINK-----PLEQHLLKQKQLLPKAY------- 101 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 + H FC +++Q+ N+ S F I + + + + + D Sbjct: 102 ITNFHGFCSTLLKQYGYLINLNSKFDIC--TDPSLIKHQILDNCIETWAEDQ 151 >gi|78223920|ref|YP_385667.1| UvrD/REP helicase [Geobacter metallireducens GS-15] gi|78195175|gb|ABB32942.1| UvrD/REP helicase [Geobacter metallireducens GS-15] Length = 678 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 55/165 (33%), Gaps = 38/165 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL + ++ A V A AGSGKT ++ R+ LLL +L +T T Sbjct: 1 MLDLSTLNPPQRAAAEHTEGPLLVLAGAGSGKTRVITYRIGHLLLDKKVKAEDILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV E++ G+ Sbjct: 61 NKAAGEMKERVRELVGRGKAK-------------------------------------GM 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I+++ +F+I LI +A + Sbjct: 84 VISTFHSLGVRILRRDIERLGYKKNFSIYTTSDQIGLIRQAMREV 128 >gi|332177326|gb|AEE13016.1| UvrD/REP helicase [Porphyromonas asaccharolytica DSM 20707] Length = 789 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 67/188 (35%), Gaps = 40/188 (21%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL + ++++ A V A AGSGKT ++ ++ L+ +P L LT T Sbjct: 1 MVDLTALNEAQRAAVVYNEGPALVIAGAGSGKTRVITYKLAHLVDQGWNPQRLYALTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV +++ L+ Sbjct: 61 KAAGEMRSRVSDMLGESI-------------------------------------AYRLR 83 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T HA C I++++ + ++I D +K LI K + D N + Sbjct: 84 MGTFHAICGRILRRYAPLLGYSQDYSIYDTSDTKALIRNCIKEL---DLSDKNYTPTRVL 140 Query: 193 YEILEISN 200 I + N Sbjct: 141 KRISDAKN 148 >gi|330431031|gb|AEC16090.1| exonuclease V beta subunit [Gallibacterium anatis UMN179] Length = 1199 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 76/180 (42%), Gaps = 19/180 (10%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRV 82 ++ + A+AG+GKT+ +V LRLLL +L +T T+ A E+ R+ Sbjct: 13 AQNNIIEASAGTGKTYTMVTLYLRLLLQAGENNFPTPLDIEQILVVTFTRDATRELRQRI 72 Query: 83 LEIITAWSHL-------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E +W L D+ + + + ++ A L E + T Sbjct: 73 RERTQSWLKLLESYQQNRDKSEIKDNELLALLPYLEDHLALAIQRLSFACEYIDKAAIFT 132 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE---EAKKSTLASIMLDNNEELKKAF 192 IH FC+ I++Q+ ++ + F E+ ++L + + + SI + + +++ F Sbjct: 133 IHGFCQRILRQYAFDSGLGFKFE-LSEQNQEQLRQVNYQLWRDKFYSISAEQAQIVRQVF 191 >gi|146276730|ref|YP_001166889.1| UvrD/REP helicase [Rhodobacter sphaeroides ATCC 17025] gi|145554971|gb|ABP69584.1| ATP-dependent DNA helicase, Rep family [Rhodobacter sphaeroides ATCC 17025] Length = 783 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 71/193 (36%), Gaps = 45/193 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ ++ + E +LA D + A AG+GKT L R++ LL + A P+ +L +T T Sbjct: 28 YLEDLNPAQREAVLALD--GPVLMLAGAGTGKTKALTARIVHLLDSGRARPNEILAVTFT 85 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ + Sbjct: 86 NKAAREMKDRVARMLGQVEGMP-------------------------------------- 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ I+++ + S+F I D + +L+++ + + +D + Sbjct: 108 WMGTFHSISVKILRRHAELVGLKSNFTILDTDDQLRLLKQ----LIVAANIDEKRWPARM 163 Query: 192 FYEILEISNDEDI 204 +++ + Sbjct: 164 LAGLIDHWKNRAW 176 >gi|193216394|ref|YP_001997593.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110] gi|193089871|gb|ACF15146.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110] Length = 765 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 88/223 (39%), Gaps = 41/223 (18%) Query: 16 LISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ +EQ A + T+ + A AGSGKT ++ R+ ++ N P+ +L LT T Sbjct: 18 LLKSLNTEQKKAVETTKGPVMIIAGAGSGKTRVITFRIAYIINKENCAPNQILALTFTNK 77 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV EI+ S GL + Sbjct: 78 AANEMRSRVEEILGTGSTR-------------------------------------GLWI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEELKKAF 192 T H+ +++Q TS + I D + SK LI++ +A+ +L N K Sbjct: 101 GTFHSNFARLLRQHADRLGFTSDYTIYDADDSKNLIKQIITELGIATDVLAPNAVQGKIS 160 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 + E + SD IS +TA ++ + + L + ++ Sbjct: 161 MAKNRLVTPEQMSQNASDFISEKTA-EVFYKYNERLQKNNALD 202 >gi|297622053|ref|YP_003710190.1| DNA helicase [Waddlia chondrophila WSU 86-1044] gi|297377354|gb|ADI39184.1| DNA helicase [Waddlia chondrophila WSU 86-1044] Length = 712 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 66/183 (36%), Gaps = 45/183 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 + +Q + V A AGSGKT ++ R+ L+ + S +L LT T AA EM Sbjct: 8 NEPQQDAVNTFNGPLLVLAGAGSGKTRVVTYRIAALIESGVPASQILGLTFTNKAAGEMQ 67 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ +I + + T H+ Sbjct: 68 ERIRKIANSHVL-----------------------------------------ISTFHSL 86 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 I+++ E S F I DE+ KL+ K+ L + + + + K F ++ + Sbjct: 87 GARILRESIHELGYRSDFTIYDEDDVLKLL----KACLEELKIRDKKMEPKVFRSLISKA 142 Query: 200 NDE 202 ++ Sbjct: 143 KNQ 145 >gi|256751132|ref|ZP_05492014.1| UvrD-like DNA helicase [Thermoanaerobacter ethanolicus CCSD1] gi|256750038|gb|EEU63060.1| UvrD-like DNA helicase [Thermoanaerobacter ethanolicus CCSD1] Length = 119 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 25/134 (18%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAA 75 T+ ++ + + V+A AGSGKT +LV+R++ L+ +P LL +T T AAA Sbjct: 5 WTEEQKQAITTRGSNLLVAAAAGSGKTAVLVERIINLITDEENPVDIDRLLVVTFTNAAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+ E + A I + P ++ LL + T Sbjct: 65 SEMRERIAEALIA---------------ILDQNPEDKRLANQLTLL-------NKATITT 102 Query: 136 IHAFCEAIMQQFPL 149 IH+FC +++ Sbjct: 103 IHSFCLEVVRNNFF 116 >gi|91977214|ref|YP_569873.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5] gi|91683670|gb|ABE39972.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5] Length = 688 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 55/167 (32%), Gaps = 35/167 (20%) Query: 16 LISQTKSEQLLASD------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 + EQ A + P V A AGSGKT+ L RV L++ A P +L +T Sbjct: 7 YLDGLNPEQRCAVEHGVGAGPCPPLLVIAGAGSGKTNTLAHRVAHLVVNGADPHRILLMT 66 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 ++ AAAEM+ RV I ++ Sbjct: 67 FSRRAAAEMTRRVERIARRVMGDGARGGYGALS--------------------------- 99 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H ++++ + F I D E S L+ + Sbjct: 100 --WAGTFHGIGARLLREHAERIGLDPAFTIHDREDSADLMNLVRHDL 144 >gi|325694248|gb|EGD36164.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK150] Length = 762 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 69/193 (35%), Gaps = 45/193 (23%) Query: 16 LISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L++ Q A T+ + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 4 LLNGMNDRQAEAVQTTKGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R A L + + Sbjct: 64 AAREMRER-----------------------------------AEKLKTEAQDCL----I 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ C I+++ +F I D + + L+ K L ++ LD + ++A Sbjct: 85 ATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERAIL 140 Query: 194 EILEISNDEDIET 206 + + ++ I+ Sbjct: 141 GTISNAKNDLIDE 153 >gi|325137063|gb|EGC59659.1| DNA helicase II [Neisseria meningitidis M0579] gi|325202934|gb|ADY98388.1| DNA helicase II [Neisseria meningitidis M01-240149] gi|325207267|gb|ADZ02719.1| DNA helicase II [Neisseria meningitidis NZ-05/33] Length = 735 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPVDVR--------------------------------------AMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDGGDQLSLIKRLLKSL 134 >gi|313886343|ref|ZP_07820068.1| UvrD/REP helicase [Porphyromonas asaccharolytica PR426713P-I] gi|312924212|gb|EFR34996.1| UvrD/REP helicase [Porphyromonas asaccharolytica PR426713P-I] Length = 785 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 67/188 (35%), Gaps = 40/188 (21%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL + ++++ A V A AGSGKT ++ ++ L+ +P L LT T Sbjct: 1 MVDLTALNEAQRAAVVYNEGPALVIAGAGSGKTRVITYKLAHLVDQGWNPQRLYALTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV +++ L+ Sbjct: 61 KAAGEMRSRVSDMLGESI-------------------------------------AYRLR 83 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T HA C I++++ + ++I D +K LI K + D N + Sbjct: 84 MGTFHAICGRILRRYAPLLGYSQDYSIYDTSDTKALIRNCIKEL---DLSDKNYTPTRVL 140 Query: 193 YEILEISN 200 I + N Sbjct: 141 KRISDAKN 148 >gi|210635292|ref|ZP_03298488.1| hypothetical protein COLSTE_02419 [Collinsella stercoris DSM 13279] gi|210158453|gb|EEA89424.1| hypothetical protein COLSTE_02419 [Collinsella stercoris DSM 13279] Length = 1197 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 71/197 (36%), Gaps = 50/197 (25%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-------------- 62 I ++ + +VSA AGSGKT L QR++ L + P Sbjct: 4 IKLDAKQERIVKTLEGPLFVSAGAGSGKTFTLTQRIMYALRPGSKPQGQWADPQVPEPFL 63 Query: 63 ---STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119 +L +T T+ AA E+ R+ + L DE + AE K+ Sbjct: 64 DSIDQVLAITFTEKAAEELKERIR------AALIDEGMDAEAAKVDN------------- 104 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 + TIH C I++ L+ + F +A+ + L A + L Sbjct: 105 -----------AWISTIHGMCSRIIRAHALDLGLDPAFGVAEYAE--DLKRAAVEHVLRR 151 Query: 180 IMLDNNEELKKAFYEIL 196 + + + A+ ++L Sbjct: 152 AIAE-DATGAGAYDDLL 167 >gi|162448187|ref|YP_001621319.1| DNA helicase II [Acholeplasma laidlawii PG-8A] gi|161986294|gb|ABX81943.1| DNA helicase II [Acholeplasma laidlawii PG-8A] Length = 703 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 42/170 (24%) Query: 11 SETIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 + + + Q +Q A+ + +V A AG+GKT L R+ L+ P ++L + Sbjct: 1 MKMTNWLEQLNPQQKKAATHISGPLFVVAGAGTGKTRTLTTRIAYLIEELGVAPDSILAV 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R++E+ ++ + Sbjct: 61 TFTNKAAREMKERIVEMAGPYATNT----------------------------------- 85 Query: 129 GGLKVQTIHAFCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T HAF ++++ L+ T +F I DE+ +K ++ + K Sbjct: 86 ---WIYTFHAFGVKVLRRDIEHLKMGYTVNFNIIDEDDAKAMVRKIIKDL 132 >gi|163789389|ref|ZP_02183828.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. AT7] gi|159875243|gb|EDP69308.1| ATP-dependent DNA helicase PcrA [Carnobacterium sp. AT7] Length = 750 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 ++ ++ + + ++ + + A AGSGKT +L R+ L+ N +P +L +T Sbjct: 6 NLLNGMNPKQKDAVVCT--QGPLLIMAGAGSGKTRVLTHRIAYLIEEKNVNPWNILAITF 63 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV ++ Sbjct: 64 TNKAAKEMKERVTRLMKEGG--------------------------------------SD 85 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + V T H+ C I+++ T F I+D + + L++ K Sbjct: 86 VWVSTFHSMCVRILRRDIDRIGYTKAFTISDPSEQQTLMKRILKE 130 >gi|319404491|emb|CBI78098.1| DNA helicase II [Bartonella rochalimae ATCC BAA-1498] Length = 815 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 66/186 (35%), Gaps = 42/186 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 ++ + V A AG+GKT +L R+ +L AHP +L +T T AA EM Sbjct: 47 NPEQKQAVINTEGPVLVLAGAGTGKTRVLTTRISHILHLGLAHPKQILAVTFTNKAAHEM 106 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ E++ + T H+ Sbjct: 107 KTRIGELVGETVENMP-------------------------------------WLGTFHS 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + S+F I D + +L+++ + + LD+ + +++ Sbjct: 130 TGAKILRRHAELVGLKSNFTILDRDDVIRLLKQ----LIQAEGLDDKRWPARNLAMMIDS 185 Query: 199 SNDEDI 204 ++ + Sbjct: 186 WKNQGL 191 >gi|218780684|ref|YP_002432002.1| UvrD/REP helicase [Desulfatibacillum alkenivorans AK-01] gi|218762068|gb|ACL04534.1| UvrD/REP helicase [Desulfatibacillum alkenivorans AK-01] Length = 638 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 58/165 (35%), Gaps = 39/165 (23%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 I Q A V A AGSGKT L RV RL+ + A P+ +L LT T+ Sbjct: 5 IQYEKDLNESQYEAVTTLEGPMLVIAGAGSGKTRTLTYRVARLVDSGAPPARILLLTFTR 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 A+ EM + +A LL + G Sbjct: 65 KASEEM-----------------------------------LRRAGVLLGMDCDDVAG-- 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 T H+F +++++ + F I D + LI+ KK + Sbjct: 88 -GTFHSFSHQMLRRYAFKLGFDPGFVILDRPDCEALIDRLKKELV 131 >gi|147678864|ref|YP_001213079.1| superfamily I DNA/RNA helicase [Pelotomaculum thermopropionicum SI] gi|146274961|dbj|BAF60710.1| superfamily I DNA and RNA helicases [Pelotomaculum thermopropionicum SI] Length = 710 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 44/190 (23%), Positives = 71/190 (37%), Gaps = 44/190 (23%) Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL+SQ +Q+ A + V A AGSGKT +L RV LL P +L +T T Sbjct: 1 MDLLSQLNPDQVAAVTHGEGPLLVLAGAGSGKTRVLTCRVAYLLKEFKVLPHQILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ ET L Sbjct: 61 NKAAGEMRERVGALVP--------------------------------------ETARDL 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T HA C I+++ +F I D + ++++ K + LD+ + +A Sbjct: 83 WICTFHAACLRILRRQESFYGRDRNFVIYDADDQLTVLKDCIK----ELKLDDKKHPPRA 138 Query: 192 FYEILEISND 201 + + + Sbjct: 139 VAAAISQAKN 148 >gi|153002977|ref|YP_001377302.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5] gi|152026550|gb|ABS24318.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5] Length = 779 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 45/177 (25%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ ++ + E +L D V A AGSGKT ++V R+ RL+ P +L +T T Sbjct: 7 LLEGLNDAQREAVLHGD--GPLLVLAGAGSGKTRVIVHRIARLVRDERVMPWHVLAVTFT 64 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ L Sbjct: 65 NKAAGEMKDRLEALLGT--------------------------------------QASEL 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 VQT HAF +++ A + FAI D++ + K + +++ E L Sbjct: 87 WVQTFHAFGARFLRREAARAGLPPSFAIYDDDDQIR----VVKRIFQELRVEDGEPL 139 >gi|313835931|gb|EFS73645.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA2] gi|314927226|gb|EFS91057.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL044PA1] gi|314970659|gb|EFT14757.1| ATP-dependent DNA helicase PcrA [Propionibacterium acnes HL037PA3] gi|328906126|gb|EGG25901.1| ATP-dependent DNA helicase PcrA [Propionibacterium sp. P08] Length = 810 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 40/163 (24%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL++ Q A V A AGSGKT +L +R+ L+ HP ++L +T T Sbjct: 40 DLLADLNEPQREAVLHAGSPVLVVAGAGSGKTRVLTRRIAHLVGERGVHPGSILAITFTN 99 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV++++ + + Sbjct: 100 KAAAEMKARVVDLVGNRAKP--------------------------------------MW 121 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V T H+ +++ I+ +F+I D+ +K+L+ + Sbjct: 122 VSTFHSAAVRMLRTDIDRLGISRNFSIYDDTDAKRLVTLVTRD 164 >gi|262276890|ref|ZP_06054683.1| ATP-dependent DNA helicase PcrA [alpha proteobacterium HIMB114] gi|262223993|gb|EEY74452.1| ATP-dependent DNA helicase PcrA [alpha proteobacterium HIMB114] Length = 742 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 67/179 (37%), Gaps = 40/179 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74 L S ++L S+ V A AGSGKT +L R+ L+ +LC+T T A Sbjct: 5 LNSLNNQQKLAVSNTEGPLQVLAGAGSGKTKVLTSRIAYLIQQKKCFGQQILCVTFTNKA 64 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM RVL+++ + S + Sbjct: 65 ASEMRERVLKLVNSKSVAFP-------------------------------------WLG 87 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ C ++++ + +F I D KLI+ + +I + N + AFY Sbjct: 88 TFHSICNKMLRKNSEAVGLKPNFTIIDTLDQIKLIKNILSA--ENIDIKKNPPKQIAFY 144 >gi|118602354|ref|YP_903569.1| UvrD/REP helicase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567293|gb|ABL02098.1| UvrD/REP helicase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 718 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 74/199 (37%), Gaps = 44/199 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67 SE + ++ + Q + + ++A + A AGSGKT +L R+ L+ + +L Sbjct: 2 NLSEITNDLNDKQC-QSVTFNNEKNALILAGAGSGKTRVLTHRIAYLITQKDIRIDAILA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ LL +++ Sbjct: 61 VTFTNKAATEMRERLS-----------------------------------TLLRRPIQS 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + + T H+ +++ ++ +TS F I D + ++ K + +D ++ Sbjct: 86 ---MWMGTFHSLAHRLLRTHYEKSKLTSGFQILDAQDQFRI----VKRLMKENSIDESKF 138 Query: 188 LKKAFYEILEISNDEDIET 206 K + +EDI Sbjct: 139 PIKKVQWFINNQKNEDIRA 157 >gi|255020481|ref|ZP_05292546.1| Exodeoxyribonuclease V beta chain [Acidithiobacillus caldus ATCC 51756] gi|254970091|gb|EET27588.1| Exodeoxyribonuclease V beta chain [Acidithiobacillus caldus ATCC 51756] Length = 1185 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 61/164 (37%), Gaps = 14/164 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-------STLLCLTHTKAAAAEMSHRVL 83 SA + A+AG+GKT+ + LRLLL + P +L +T T+AA E+ R+ Sbjct: 13 QGSALIEASAGTGKTYTIATLYLRLLLGHGEPATPPRQPREILVMTFTRAATEELRERIA 72 Query: 84 EIITA-----WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + A + ++ P+ + + A L + + TI A Sbjct: 73 LRLYETITALREGAPPASSDALLQRLLRDYPDPATRAAAIIRLENAFNSVDEASIHTIDA 132 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 +C ++++ L I S L A + + Sbjct: 133 WCHRVLREHALATGHDPEAEIL--TDSAPLRIRAVQDFWRREIY 174 >gi|56750402|ref|YP_171103.1| hypothetical protein syc0393_c [Synechococcus elongatus PCC 6301] gi|56685361|dbj|BAD78583.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 1061 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 85/215 (39%), Gaps = 42/215 (19%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAA 76 EQ A S V+A AG+GKT +L QR L L + P ++ LT T+ AAA Sbjct: 3 LTEEQRQAVQAAGSVAVTAGAGTGKTELLSQRYLWHLQQASESVSPLEIVVLTFTEKAAA 62 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R+ + + K P++SD L ++ T Sbjct: 63 ELRSRIRKAVG------------------NKWPDRSDW----------LAEVEAAQISTF 94 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+ C I ++ P A + F I D+ K + +++ +EL + ++++ Sbjct: 95 HSLCARICREHPAAAGQPADFTILDDLAGKLWQQ--------TVLTAAMQELDPSCFDVM 146 Query: 197 EISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231 + S + L+ ++ + + + S WR Sbjct: 147 DYS---EWRPLLETLLDDPVRSQALLAVESEQWRE 178 >gi|269218850|ref|ZP_06162704.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 848 str. F0332] gi|269211961|gb|EEZ78301.1| ATP-dependent DNA helicase PcrA [Actinomyces sp. oral taxon 848 str. F0332] Length = 831 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 39/168 (23%) Query: 10 HSETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 S +++ +QL A + V A AGSGKT +L R+ L+ + A P +L Sbjct: 2 DSRVQRIVAGLNPQQLEAVTHSGAPLLVVAGAGSGKTRVLTSRIGYLIASGRAAPGQILA 61 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ + + + Sbjct: 62 ITFTNKAAREMRERLESALGGSAIRT---------------------------------- 87 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + V T H+ C +I++ + S F I D + +++L++ + Sbjct: 88 ---MWVSTFHSACVSILRSEHDALGMRSTFTIYDAQDAQRLMKLVCRE 132 >gi|332075466|gb|EGI85935.1| recombination helicase AddA [Streptococcus pneumoniae GA41301] Length = 1216 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 83/222 (37%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSAQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + ++E + + + + K+ F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLILE---NEVFHEVFEAHYQGKQKETFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + +S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223 >gi|239998017|ref|ZP_04717941.1| UvrD [Neisseria gonorrhoeae 35/02] gi|240113875|ref|ZP_04728365.1| UvrD [Neisseria gonorrhoeae MS11] gi|240116607|ref|ZP_04730669.1| UvrD [Neisseria gonorrhoeae PID18] gi|240124760|ref|ZP_04737646.1| UvrD [Neisseria gonorrhoeae SK-92-679] gi|268593866|ref|ZP_06128033.1| DNA helicase II [Neisseria gonorrhoeae 35/02] gi|268599941|ref|ZP_06134108.1| DNA helicase II [Neisseria gonorrhoeae MS11] gi|268602276|ref|ZP_06136443.1| DNA helicase II [Neisseria gonorrhoeae PID18] gi|268683334|ref|ZP_06150196.1| DNA helicase II [Neisseria gonorrhoeae SK-92-679] gi|268547255|gb|EEZ42673.1| DNA helicase II [Neisseria gonorrhoeae 35/02] gi|268584072|gb|EEZ48748.1| DNA helicase II [Neisseria gonorrhoeae MS11] gi|268586407|gb|EEZ51083.1| DNA helicase II [Neisseria gonorrhoeae PID18] gi|268623618|gb|EEZ56018.1| DNA helicase II [Neisseria gonorrhoeae SK-92-679] Length = 735 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R +I + Sbjct: 69 KAAKEMQTRFGAMIPI--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|240015007|ref|ZP_04721920.1| UvrD [Neisseria gonorrhoeae DGI18] gi|240122076|ref|ZP_04735038.1| UvrD [Neisseria gonorrhoeae PID24-1] gi|254494631|ref|ZP_05107802.1| DNA helicase II [Neisseria gonorrhoeae 1291] gi|226513671|gb|EEH63016.1| DNA helicase II [Neisseria gonorrhoeae 1291] Length = 735 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R +I + Sbjct: 69 KAAKEMQTRFGAMIPI--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|111657164|ref|ZP_01407943.1| hypothetical protein SpneT_02001617 [Streptococcus pneumoniae TIGR4] Length = 1177 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 83/222 (37%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSAQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + ++E + + + + K+ F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLILE---NEVFHEVFEAHYQGKQKETFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + +S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223 >gi|257452062|ref|ZP_05617361.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 3_1_5R] gi|257466139|ref|ZP_05630450.1| ATP-dependent DNA helicase pcrA [Fusobacterium gonidiaformans ATCC 25563] gi|315917297|ref|ZP_07913537.1| ATP-dependent DNA helicase pcrA [Fusobacterium gonidiaformans ATCC 25563] gi|317058610|ref|ZP_07923095.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 3_1_5R] gi|313684286|gb|EFS21121.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. 3_1_5R] gi|313691172|gb|EFS28007.1| ATP-dependent DNA helicase pcrA [Fusobacterium gonidiaformans ATCC 25563] Length = 717 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 45/193 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++ ++ + E A+ + A AGSGKT + R+ ++ P +L +T T Sbjct: 3 LLEKLNDKQRE--AAATVEGPLLILAGAGSGKTRTITYRIAHMIEELGIPPYLILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV+ +I + Sbjct: 61 NKAAKEMKERVISLIGEEAE--------------------------------------RA 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+F +++ + + ++F I D E K++I K + + L N + +K Sbjct: 83 TISTFHSFGVRLLRMYGSKLGYQANFTIYDVEDQKRII----KGIMKELNLQNTDLSEKK 138 Query: 192 FYEILEISNDEDI 204 ++ +E + Sbjct: 139 LASLISKLKEEGV 151 >gi|126741390|ref|ZP_01757064.1| DNA helicase II, putative [Roseobacter sp. SK209-2-6] gi|126717526|gb|EBA14254.1| DNA helicase II, putative [Roseobacter sp. SK209-2-6] Length = 794 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 33/195 (16%), Positives = 73/195 (37%), Gaps = 44/195 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 + ++ ++ + E + + + A AG+GKT L R++ LL A + +L +T Sbjct: 25 TPYLEGLNPAQREAVECLE--GPVLMLAGAGTGKTKALTARIVHLLNTGSARTNEILAVT 82 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV ++ + G Sbjct: 83 FTNKAAREMKERVGGMLGQPAE-------------------------------------G 105 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + T H+ C ++++ A + S+F I D + +L+++ + + +D+ Sbjct: 106 MPWLGTFHSICVKLLRRHAELAGLKSNFTILDTDDQIRLLKQ----LIKAEGIDDKRWPA 161 Query: 190 KAFYEILEISNDEDI 204 + I++ + + Sbjct: 162 RMLANIIDDWKNRAL 176 >gi|73539989|ref|YP_294509.1| UvrD/REP helicase [Ralstonia eutropha JMP134] gi|72117402|gb|AAZ59665.1| UvrD/REP helicase [Ralstonia eutropha JMP134] Length = 725 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 59/163 (36%), Gaps = 31/163 (19%) Query: 16 LISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 +S+ EQ A + + A AGSGKT+ L RV L+L A P +L LT ++ Sbjct: 48 YLSRLNPEQRAAVEHHSDGPLLIIAGAGSGKTNTLAHRVAHLVLNGADPRRILLLTFSRR 107 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM RV I+ + A + Sbjct: 108 AAAEMGRRVERIVDQALGTNTGAGRAALQ-----------------------------WS 138 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA +++++ ++ F I D + L+ + Sbjct: 139 GTFHAIGARLLREYAETLGLSPAFTICDRGDAADLMHVVRHDL 181 >gi|227486420|ref|ZP_03916736.1| ATP-dependent exoDNAse beta subunit [Anaerococcus lactolyticus ATCC 51172] gi|227235601|gb|EEI85616.1| ATP-dependent exoDNAse beta subunit [Anaerococcus lactolyticus ATCC 51172] Length = 1121 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 30/194 (15%), Positives = 74/194 (38%), Gaps = 25/194 (12%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75 + T ++ + ++ VSA AGSGKT +LV RV+ +++ ++ +T T +A Sbjct: 4 LRLTDGQRTAIYERDKNIIVSAAAGSGKTMVLVNRVISMMVEEGIDIDKMIIVTFTNKSA 63 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +M ++ E + + D K+ +++T Sbjct: 64 QDMKDKIREALEKRATDFDPAFIKRQFKLLKL-----------------------AQIKT 100 Query: 136 IHAFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 +H+FC ++++ + ++ +F + + K + +A + + Sbjct: 101 LHSFCSDMLRENFYYLDKLSPNFKVMPDSTGKIYMADAIDEVFDRQYEKMDPDFVYFLQN 160 Query: 195 ILEISNDEDIETLI 208 +D + + +I Sbjct: 161 FSGERSDYNAKQII 174 >gi|157363798|ref|YP_001470565.1| UvrD/REP helicase [Thermotoga lettingae TMO] gi|157314402|gb|ABV33501.1| UvrD/REP helicase [Thermotoga lettingae TMO] Length = 627 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 55/224 (24%), Positives = 83/224 (37%), Gaps = 42/224 (18%) Query: 15 DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 D + Q EQ A RS + A GSGKT ++ ++L LL PS +L +T T+ Sbjct: 3 DYLQQLDDEQRTAVLKSAGRSIII-AGPGSGKTRVITYKLLHLLKTGIKPSEILLVTFTR 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA EM R AR L LE G+ Sbjct: 62 AAANEMIDR-----------------------------------ARMLTGIDLE---GIT 83 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 T H C I++++ + + +F I DEE SK LI+ + L + Sbjct: 84 AGTFHHICNLILRRYARKVGLFPNFTILDEEDSKSLIKHVRTMVLERTGEIKHFPSHGVL 143 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +I + + + TL S ++ ++R IEK Sbjct: 144 QKIFSYATN-TMSTLHSALLKINPKYIDYEKIIEDIYREYTIEK 186 >gi|15901017|ref|NP_345621.1| exonuclease RexA [Streptococcus pneumoniae TIGR4] gi|15903084|ref|NP_358634.1| exonuclease RexA [Streptococcus pneumoniae R6] gi|116515444|ref|YP_816490.1| exonuclease RexA [Streptococcus pneumoniae D39] gi|81531934|sp|Q97QP9|ADDA_STRPN RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA; AltName: Full=Exonuclease RexA gi|81588100|sp|Q8DPR6|ADDA_STRR6 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|122278624|sp|Q04KF8|ADDA_STRP2 RecName: Full=ATP-dependent helicase/nuclease subunit A; AltName: Full=ATP-dependent helicase/nuclease AddA gi|14972629|gb|AAK75261.1| exonuclease RexA [Streptococcus pneumoniae TIGR4] gi|15458659|gb|AAK99844.1| First subunit of major exonuclease [Streptococcus pneumoniae R6] gi|116076020|gb|ABJ53740.1| exonuclease RexA [Streptococcus pneumoniae D39] Length = 1216 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 83/222 (37%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSAQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ +D D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISKKIQETD------------------DVDLKQHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + ++E + + + + K+ F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLILE---NEVFHEVFEAHYQGKQKETFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + +S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223 >gi|315655665|ref|ZP_07908563.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii ATCC 51333] gi|315489729|gb|EFU79356.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii ATCC 51333] Length = 877 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 41/165 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 + +D ++ + + + V A AGSGKT +L +R+ LL P +L +T Sbjct: 59 AAIVDGLN--PEQHAAVTHESGPLLVMAGAGSGKTRVLTRRIAWLLATERIRPWEVLAIT 116 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM RV ++ + Sbjct: 117 FTNKAAAEMRQRVESLVGNAAKY------------------------------------- 139 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + V T H+ C I++ +T F+I D +K L+ K Sbjct: 140 -MWVSTFHSACVRILRAEADTLGVTRSFSIYDTADTKALLNRIIK 183 >gi|242279801|ref|YP_002991930.1| UvrD/REP helicase [Desulfovibrio salexigens DSM 2638] gi|242122695|gb|ACS80391.1| UvrD/REP helicase [Desulfovibrio salexigens DSM 2638] Length = 707 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 39/165 (23%) Query: 13 TIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 ID ++ Q A+ P V A AGSGKT +V R+ L+ P ++L +T T Sbjct: 1 MIDFKNELNPAQYEAATHPQGPVLVIAGAGSGKTRTIVYRLAWLVEQGIPPESILLMTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + AA EM R I+ G Sbjct: 61 RKAAQEMLQRTELILGR--------------------------------------NLHGT 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T HAF ++++Q E + + D S+ ++E K Sbjct: 83 QGGTFHAFAYSVLRQNAAEIGFPNGITLMDRSDSEAAVKEVKDQL 127 >gi|323139776|ref|ZP_08074812.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242] gi|322394980|gb|EFX97545.1| UvrD/REP helicase [Methylocystis sp. ATCC 49242] Length = 687 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 62/167 (37%), Gaps = 38/167 (22%) Query: 16 LISQTKSEQLLASD---------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66 + + +EQ A + P V A AGSGKT+ L RV L++ A P +L Sbjct: 3 YLEKLNAEQRQAVEHGVWDKRCAPGGPLLVIAGAGSGKTNTLAHRVAHLIVNGADPRRIL 62 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T ++ AAAEM+ RV I S IL Sbjct: 63 LMTFSRRAAAEMTRRVERICAEALGASAGIL----------------------------- 93 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T G T + +++ + E +T F I D E + L+ + Sbjct: 94 TNGLAWAGTFNGVGARLLRDYAGEIGLTPDFTIHDREDAADLMNLVR 140 >gi|163758971|ref|ZP_02166057.1| putative ATP-dependent DNA helicase [Hoeflea phototrophica DFL-43] gi|162283375|gb|EDQ33660.1| putative ATP-dependent DNA helicase [Hoeflea phototrophica DFL-43] Length = 840 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 72/191 (37%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 ++ EQ A + V A AG+GKT +L R+ +L A PS +L +T T Sbjct: 55 YLAGLNPEQADAVESIEGPVLVLAGAGTGKTRVLTTRIAHILNLGLAFPSQILSVTFTNK 114 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ G + Sbjct: 115 AAREMKERIGVLVGGAVE-------------------------------------GMPWL 137 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ ++++ AN+ S F I D + +L+++ + + +D+ + F Sbjct: 138 GTFHSIGVKLLRRHAELANLRSDFTILDTDDVIRLVKQ----LIQAEGIDDKRWPARQFA 193 Query: 194 EILEISNDEDI 204 ++++ ++ + Sbjct: 194 QMIDGWKNKGL 204 >gi|239631845|ref|ZP_04674876.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526310|gb|EEQ65311.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 751 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 44/194 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + ++ +SE +LA++ + A AGSGKT +L R+ L+ + +P +L +T T Sbjct: 6 ALKGMNDKQSEAVLATE--GPVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +++ A E + Sbjct: 64 NKAAREMRERVGKLVDA-------------------------------------EIARDI 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T HA C I+++ + F IAD + L K LA LD K+ Sbjct: 87 WVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQLTL----VKHILADFNLDPKRYDPKS 142 Query: 192 FYEILEISNDEDIE 205 + + +E ++ Sbjct: 143 ILGAISSAKNELVD 156 >gi|191637996|ref|YP_001987162.1| ATP-dependent DNA helicase [Lactobacillus casei BL23] gi|190712298|emb|CAQ66304.1| ATP-dependent DNA helicase [Lactobacillus casei BL23] gi|327382072|gb|AEA53548.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei LC2W] gi|327385216|gb|AEA56690.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei BD-II] Length = 751 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 44/194 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + ++ +SE +LA++ + A AGSGKT +L R+ L+ + +P +L +T T Sbjct: 6 ALKGMNDKQSEAVLATE--GPVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +++ A E + Sbjct: 64 NKAAREMRERVGKLVDA-------------------------------------EIARDI 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T HA C I+++ + F IAD + L K LA LD K+ Sbjct: 87 WVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQLTL----VKHILADFNLDPKRYDPKS 142 Query: 192 FYEILEISNDEDIE 205 + + +E ++ Sbjct: 143 ILGAISSAKNELVD 156 >gi|116494556|ref|YP_806290.1| superfamily I DNA/RNA helicase [Lactobacillus casei ATCC 334] gi|116104706|gb|ABJ69848.1| ATP-dependent DNA helicase PcrA [Lactobacillus casei ATCC 334] Length = 751 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 44/194 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + ++ +SE +LA++ + A AGSGKT +L R+ L+ + +P +L +T T Sbjct: 6 ALKGMNDKQSEAVLATE--GPVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +++ A E + Sbjct: 64 NKAAREMRERVGKLVDA-------------------------------------EIARDI 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T HA C I+++ + F IAD + L K LA LD K+ Sbjct: 87 WVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQLTL----VKHILADFNLDPKRYDPKS 142 Query: 192 FYEILEISNDEDIE 205 + + +E ++ Sbjct: 143 ILGAISSAKNELVD 156 >gi|161507067|ref|YP_001577021.1| ATP-dependent helicase [Lactobacillus helveticus DPC 4571] gi|160348056|gb|ABX26730.1| ATP-dependent helicase [Lactobacillus helveticus DPC 4571] Length = 748 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 40/162 (24%) Query: 17 ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 ++ +Q A + T V A AGSGKT +L +R+ L+ N P +L +T T A Sbjct: 7 LAGLNPQQKKAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R +++ + + + Sbjct: 67 ANEMREREQKLLGPAAQ--------------------------------------NIWMS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA C I+++ + + +F+IAD + L++ +K Sbjct: 89 TFHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDL 130 >gi|332180280|gb|AEE15968.1| UvrD/REP helicase [Treponema brennaborense DSM 12168] Length = 765 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 85/230 (36%), Gaps = 68/230 (29%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65 H + +S EQ A + + S + A AGSGKT ++ ++ L+ + P ++ Sbjct: 3 NTHPTAAEYLSVLNPEQRAAVEHSGSPLLILAGAGSGKTRVITTKIAYLIGEKDVDPYSI 62 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T TK AAAEM+ R ARHL Sbjct: 63 LAVTFTKKAAAEMASR-----------------------------------ARHLEPRAA 87 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI---------EEAKKST 176 T ++T H+F ++ EA + F + DE+ L+ +EA ++ Sbjct: 88 NT----AIRTFHSFGAWFLRLHAQEAGLDPSFTVYDEDDMVTLLTKALPALSRQEASRAV 143 Query: 177 -----------------LASI-MLDNNEELKKAFYEILEISNDEDIETLI 208 LA I +N ++ +A+ L+ + + D LI Sbjct: 144 HKISLAKDYCLTPDSPDLAEIDAAENFPDVYRAYQNRLKETGNVDFGDLI 193 >gi|328462071|gb|EGF34244.1| ATP-dependent helicase [Lactobacillus helveticus MTCC 5463] Length = 745 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 40/162 (24%) Query: 17 ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 ++ +Q A + T V A AGSGKT +L +R+ L+ N P +L +T T A Sbjct: 7 LAGLNPQQKKAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R +++ + + + Sbjct: 67 ANEMREREQKLLGPAAQ--------------------------------------NIWMS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA C I+++ + + +F+IAD + L++ +K Sbjct: 89 TFHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDL 130 >gi|300245038|gb|ADJ94112.1| UvrD helicase [Hordeum vulgare subsp. vulgare] Length = 1185 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 45/193 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 ++ E + ++ + E SD + A GSGKT +V RVL LL PS +L + Sbjct: 299 KYYEYLHSLNDKQREA-SCSDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEGISPSNILAM 357 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AAA+EM R+ ++ A+ ++ Sbjct: 358 TFTTAAASEMRDRIGAVVGKAV--------------------------AKEII------- 384 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK-------STLASIM 181 + T H+FC + + + TS F I Q ++ I EA++ L + Sbjct: 385 ----ISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAIVEAERLLEHGKSDGLGDAV 440 Query: 182 LDNNEELKKAFYE 194 + ++K +F + Sbjct: 441 KQCDGDIKNSFKD 453 >gi|306820669|ref|ZP_07454297.1| ATP-dependent DNA helicase PcrA [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551279|gb|EFM39242.1| ATP-dependent DNA helicase PcrA [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 729 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 39/164 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +++ + + + + + A AGSGKT ++ ++ L+ N +P +L +T T Sbjct: 5 MEINKLNEMQHRAVTTTDGAILILAGAGSGKTRVITNKIAYLIEEKNVNPYNILAITFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV E+I S + Sbjct: 65 KAAKEMLSRVEEMIGEDSR--------------------------------------RVW 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T HAFC +++ + ++F I D + LI+ ++ Sbjct: 87 ISTFHAFCSKVLRIEAHHLDYDNNFTIYDTTDKQTLIKNCMEAL 130 >gi|299783521|gb|ADJ41519.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum CECT 5716] Length = 756 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 41/168 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 ++ ++ ++ +SE +L ++ V A AGSGKT +L R+ L+ + P +L Sbjct: 2 QNQSMLEGMNDKQSEAVLTTE--GPLLVMAGAGSGKTRVLTHRIAYLIEERHVLPWHILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV +++ E Sbjct: 60 ITFTNKAAREMKERVAKLLG--------------------------------------EA 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + V T HA C I+++ + F IAD + + LI+ + Sbjct: 82 GNDVWVSTFHALCVRILRRDIEQLGYNRAFTIADTSEQRTLIKRICEE 129 >gi|282851210|ref|ZP_06260575.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 224-1] gi|282557178|gb|EFB62775.1| ATP-dependent DNA helicase PcrA [Lactobacillus gasseri 224-1] Length = 730 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 56/147 (38%), Gaps = 39/147 (26%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 V A AGSGKT +L +R+ L+ P +L +T T AA EM RV +++ Sbjct: 5 EGPLLVVAGAGSGKTSVLTRRIAYLIEEKGVAPWNVLAITFTNKAATEMKERVQKLLGPA 64 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + + + T HA C I+++ Sbjct: 65 A--------------------------------------DSVWMSTFHALCVRILRRDAE 86 Query: 150 EANITSHFAIADEEQSKKLIEEAKKST 176 + +++F+IAD + LI+ +K Sbjct: 87 KIGYSNNFSIADSAEQLTLIKRIEKDL 113 >gi|227535467|ref|ZP_03965516.1| ATP-dependent DNA helicase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227186877|gb|EEI66944.1| ATP-dependent DNA helicase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 751 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 44/194 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + ++ +SE +LA++ + A AGSGKT +L R+ L+ + +P +L +T T Sbjct: 6 ALKGMNDKQSEAVLATE--GPVLIMAGAGSGKTRVLTHRIAYLVEEKHVNPWNILAITFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +++ A E + Sbjct: 64 NKAAREMRERVGKLVDA-------------------------------------EIARDI 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T HA C I+++ + F IAD + L K LA LD K+ Sbjct: 87 WVSTFHALCVRILRRDIDKLGYNRAFTIADPAEQLTL----VKHILADFNLDPKRYDPKS 142 Query: 192 FYEILEISNDEDIE 205 + + +E ++ Sbjct: 143 ILGAISSAKNELVD 156 >gi|294012133|ref|YP_003545593.1| DNA helicase II [Sphingobium japonicum UT26S] gi|292675463|dbj|BAI96981.1| DNA helicase II [Sphingobium japonicum UT26S] Length = 758 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 74/197 (37%), Gaps = 44/197 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + + +++ + E +L+++ V A AG+GKT L R+ L+ A+PS +L Sbjct: 9 DDPAYLQGLNEPQREAVLSTE--GPVLVLAGAGTGKTAALTARLAHLIATRRAYPSEILA 66 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV +I Sbjct: 67 VTFTNKAAREMRERVGRMIGPAVE------------------------------------ 90 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + T HA ++++ + S+F I D + +L+++ + + +D Sbjct: 91 -GMPWLGTFHAIAAKMLRRHAELVGLQSNFTILDTDDQLRLMKQ----LIQAEGIDEKRW 145 Query: 188 LKKAFYEILEISNDEDI 204 + +++ ++ + Sbjct: 146 PARQLAGLIDQWKNKGL 162 >gi|255323065|ref|ZP_05364201.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter showae RM3277] gi|255299927|gb|EET79208.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter showae RM3277] Length = 931 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 5/129 (3%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + +LL+ A + LT TK AA EM R+++ Sbjct: 5 LALEASAGSGKTFALSVRFIAILLSGADAREITALTFTKKAANEMKERIVQTFLRLEEKG 64 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 E+ AE+ +I G +K + LE LK+ T +F I++ F L + Sbjct: 65 AEL--AELEQILGAGRDKILAMRDARA-THFLE--SDLKIGTFDSFFVGILRSFCLNLGL 119 Query: 154 TSHFAIADE 162 ++ F +++ Sbjct: 120 SADFEVSEN 128 >gi|58584193|ref|YP_203209.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625962|ref|YP_453334.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58428787|gb|AAW77824.1| DNA helicase II [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369902|dbj|BAE71060.1| DNA helicase II [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 728 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 41/169 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67 + S +D ++ + E + A P V A AGSGKT +L+ R+ L + + Sbjct: 2 DVSHLLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM HR + S Sbjct: 60 VTFTNKAAGEMRHRTDLQLRNGSR------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G+ + T H +++ +A + F + D + +L++ ++ Sbjct: 84 --GMWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQAL 130 >gi|240081594|ref|ZP_04726137.1| UvrD [Neisseria gonorrhoeae FA19] gi|240124369|ref|ZP_04737325.1| UvrD [Neisseria gonorrhoeae PID332] gi|268597691|ref|ZP_06131858.1| DNA helicase II [Neisseria gonorrhoeae FA19] gi|268682996|ref|ZP_06149858.1| DNA helicase II [Neisseria gonorrhoeae PID332] gi|268551479|gb|EEZ46498.1| DNA helicase II [Neisseria gonorrhoeae FA19] gi|268623280|gb|EEZ55680.1| DNA helicase II [Neisseria gonorrhoeae PID332] Length = 735 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R +I + Sbjct: 69 KAAKEMQTRFGAMIPI--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|229496489|ref|ZP_04390203.1| UvrD/REP helicase domain protein [Porphyromonas endodontalis ATCC 35406] gi|229316386|gb|EEN82305.1| UvrD/REP helicase domain protein [Porphyromonas endodontalis ATCC 35406] Length = 536 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 76/179 (42%), Gaps = 4/179 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLA--NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 A+AG+GKT+ L L L L +L +T T A EM R++E++ + + Sbjct: 9 ASAGAGKTYTLALEYLTLALKYPEDKFRHILAMTFTNKATNEMKSRIVEVLYQLTTEREP 68 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 A + + +A+ L +IL +V TI +F + +++ F E N Sbjct: 69 SPLALALGERLDLSPEQITDRAQRTLRSILGDYSSFRVSTIDSFFQEVVRSFAFELNFAG 128 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISN 214 ++ + E + + +A L S+ + + ++ Y++ + + I +SN Sbjct: 129 NYKV--EMDQELWLHKAIVLLLHSLAEEQMSDTREWVYQLAQEEINAGRSIQIDQALSN 185 >gi|227515526|ref|ZP_03945575.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum ATCC 14931] gi|227086139|gb|EEI21451.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum ATCC 14931] Length = 760 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 41/168 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 ++ ++ ++ +SE +L ++ V A AGSGKT +L R+ L+ + P +L Sbjct: 6 QNQSMLEGMNDKQSEAVLTTE--GPLLVMAGAGSGKTRVLTHRIAYLIEERHVLPWHILA 63 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV +++ E Sbjct: 64 ITFTNKAAREMKERVAKLLG--------------------------------------EA 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + V T HA C I+++ + F IAD + + LI+ + Sbjct: 86 GNDVWVSTFHALCVRILRRDIEQLGYNRAFTIADTSEQRTLIKRICEE 133 >gi|87309169|ref|ZP_01091306.1| probable helicase [Blastopirellula marina DSM 3645] gi|87288160|gb|EAQ80057.1| probable helicase [Blastopirellula marina DSM 3645] Length = 1040 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 80/199 (40%), Gaps = 12/199 (6%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 P + + A+AGSGKT L R L +L + P+ +L T T+ AA E+ R++ + Sbjct: 3 PFQHRLIRASAGSGKTFQLSNRFLGVLASGDAPAEILATTFTRKAAGEILDRIMIRLAEA 62 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + +++ AE+ P A L + + L+VQT+ +F + Q F Sbjct: 63 ARDPNKL--AELNSFIEAAPVTPAACVAT--LRELTQQLHRLRVQTLDSFFIQVAQCFSF 118 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209 E ++IADE +L A + L + + + + + + + L+ Sbjct: 119 EMGFPPGWSIADEVDDSELRINAIEELLRE---NEAALVLEIVHLMSKGETTRGVSQLML 175 Query: 210 DIISNRTALKLIFFFFSYL 228 D S + F Sbjct: 176 DAAS-----QFYGLFQETP 189 >gi|302684905|ref|XP_003032133.1| hypothetical protein SCHCODRAFT_55730 [Schizophyllum commune H4-8] gi|300105826|gb|EFI97230.1| hypothetical protein SCHCODRAFT_55730 [Schizophyllum commune H4-8] Length = 697 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 78/207 (37%), Gaps = 45/207 (21%) Query: 14 IDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70 ++ + Q A DP + A GSGKT +L R+ L+L + P + +T Sbjct: 1 MEFLQALNEAQSKAVHHDPAIPLQILAGPGSGKTKVLTSRIAYLILHHKIPPYAICAVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ +++ E Sbjct: 61 TNKAANEMRERLTKLLGP-------------------------------------EQTSQ 83 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 +++ T HA C ++++ + + S+F I D +++KK+I A + + LK Sbjct: 84 IRMGTFHALCAQFLRRYGSKIGVDSNFTICDIDEAKKIISNHLSRYKADL---KDNTLKD 140 Query: 191 AFYEILEISNDEDIETLISDIISNRTA 217 A +L ++ + L SD + R Sbjct: 141 A--TVLASISNAKAKGLTSDDLFRRQQ 165 >gi|125717696|ref|YP_001034829.1| ATP-dependent DNA helicase, putative [Streptococcus sanguinis SK36] gi|125497613|gb|ABN44279.1| ATP-dependent DNA helicase, putative [Streptococcus sanguinis SK36] Length = 762 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 4 LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R A L + Sbjct: 62 NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C I+++ +F I D + + L+ K L ++ LD + ++A Sbjct: 84 -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138 Query: 192 FYEILEISNDEDIET 206 + + ++ I+ Sbjct: 139 ILGTISNAKNDLIDE 153 >gi|322372977|ref|ZP_08047513.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C150] gi|321278019|gb|EFX55088.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C150] Length = 775 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 74/198 (37%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ +SE + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 7 MNPLLNGMNDKQSEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 64 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + + A S Sbjct: 65 TFTNKAAREMRERAMALNPATSETL----------------------------------- 89 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L ++ LD + Sbjct: 90 ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWN 141 Query: 189 KKAFYEILEISNDEDIET 206 ++A + + ++ ++ Sbjct: 142 ERAILGTISNAKNDLLDE 159 >gi|260102795|ref|ZP_05753032.1| ATP-dependent DNA helicase PcrA [Lactobacillus helveticus DSM 20075] gi|260083399|gb|EEW67519.1| ATP-dependent DNA helicase PcrA [Lactobacillus helveticus DSM 20075] Length = 748 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 40/162 (24%) Query: 17 ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 ++ +Q A + T V A AGSGKT +L +R+ L+ N P +L +T T A Sbjct: 7 LAGLNPQQKKAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R +++ + + + Sbjct: 67 ANEMREREQKLLGPAAQ--------------------------------------NIWMS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA C I+++ + + +F+IAD + L++ +K Sbjct: 89 TFHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDL 130 >gi|198277205|ref|ZP_03209736.1| hypothetical protein BACPLE_03414 [Bacteroides plebeius DSM 17135] gi|198269703|gb|EDY93973.1| hypothetical protein BACPLE_03414 [Bacteroides plebeius DSM 17135] Length = 1075 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 16/180 (8%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L +R L+ + + +L +T T A AEM R+LE + + Sbjct: 8 LVYKASAGSGKTFTLAVHYIRQLIEDPYAYRRILAVTFTNKATAEMKERILEQLYGIAT- 66 Query: 93 SDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 +DE + +IQ + AR L I+ +++TI +F +++M+ E Sbjct: 67 ADEGSDGYLKEIQKTSAKSVEEIRESAREALRHIIHDYSRFRIETIDSFFQSVMRNLARE 126 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI-----SNDEDIE 205 + ++ +I E + +++ +A + + + + Y +LE ND + Sbjct: 127 LELGANLSI--ELNNTEVLSDAVDAMIEKL-----DRRSPVLYWLLEYIEERIVNDRRWD 179 >gi|118619792|ref|YP_908124.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium ulcerans Agy99] gi|118571902|gb|ABL06653.1| ATP-dependent DNA helicase II UvrD1 [Mycobacterium ulcerans Agy99] Length = 769 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 77/224 (34%), Gaps = 42/224 (18%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ + A AGSGKT +L +R+ L+ A +L +T T AAAE+ Sbjct: 16 NPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLIAARGVGVGQILAITFTNKAAAEV 75 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV+ ++ + + V T H+ Sbjct: 76 RERVVSLVGGRAKY--------------------------------------MWVSTFHS 97 Query: 139 FCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 C I++ + S+F+I D + S++L++ + I + L A + Sbjct: 98 TCVRILRNQAALIKGLNSNFSIYDADDSRRLLQMIGRDMGLDIKRYSPRLLTNAISNLKN 157 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 D D +SD+ + L ++R++ + Sbjct: 158 ELIDPD--RAVSDLSEDSDDLARTVASVYAEYQRRLRAANALDF 199 >gi|149198486|ref|ZP_01875531.1| exodeoxyribonuclease V, 135 kDa subunit [Lentisphaera araneosa HTCC2155] gi|149138492|gb|EDM26900.1| exodeoxyribonuclease V, 135 kDa subunit [Lentisphaera araneosa HTCC2155] Length = 1198 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 78/192 (40%), Gaps = 6/192 (3%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT+ + L +L S +L +T T+ A E+ RV + ++ Sbjct: 18 LIEASAGTGKTYSIANIFLHFILKGRDVSEILVVTFTEDATKELRDRVRKNLSKALLQIR 77 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 ++ E ++ + R L L + TIH FC+ ++++ E++ Sbjct: 78 GDVTEEDPTLKAIIEIYPHQDENRRRLELALVNFDQAVISTIHGFCQRMLKENAFESH-- 135 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL---KKAFYEILEISNDEDIETLIS-D 210 S F + KLI+E + + D+ + ++++ + IE D Sbjct: 136 STFDMELVTDDSKLIDELVEDFIRIESYDHQSAFNYDAEQLKSLIKLYKGQAIEEAEEFD 195 Query: 211 IISNRTALKLIF 222 + + + ++ Sbjct: 196 LEARKQKFIELY 207 >gi|294786844|ref|ZP_06752098.1| ATP-dependent helicase PcrA [Parascardovia denticolens F0305] gi|315226480|ref|ZP_07868268.1| ATP-dependent DNA helicase PcrA [Parascardovia denticolens DSM 10105] gi|294485677|gb|EFG33311.1| ATP-dependent helicase PcrA [Parascardovia denticolens F0305] gi|315120612|gb|EFT83744.1| ATP-dependent DNA helicase PcrA [Parascardovia denticolens DSM 10105] Length = 901 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 39/144 (27%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 + A AGSGKT +L +R+ L +A+PS +L +T T AA EM R+ +I + Sbjct: 69 LLIGAGAGSGKTRVLTRRIAWALSQWHAYPSQILAITFTNKAAREMKERLGSLIGPVAET 128 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + V T H+ C I+++ + Sbjct: 129 --------------------------------------MWVSTFHSACVRILRRHGKDIG 150 Query: 153 ITSHFAIADEEQSKKLIEEAKKST 176 ++S F+I D ++L++ + Sbjct: 151 LSSGFSIYDTADCQRLVKLICQDF 174 >gi|257458469|ref|ZP_05623609.1| ATP-dependent DNA helicase PcrA [Treponema vincentii ATCC 35580] gi|257444170|gb|EEV19273.1| ATP-dependent DNA helicase PcrA [Treponema vincentii ATCC 35580] Length = 809 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 41/164 (25%) Query: 12 ETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 ET +S EQL A + A AGSGKT ++ ++ L+ P ++L +T Sbjct: 3 ETCKYLSVLNPEQLEAVCHTGSPLLILAGAGSGKTRVITTKIAWLIAEQGVRPESILAVT 62 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM+ R + + DE + + Sbjct: 63 FTNKAAREMAER--------ARVLDERTARSV---------------------------- 86 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 ++T H+F +++++ A ++ +F I D+E S L+ +A Sbjct: 87 ---IRTFHSFGAWMLRRYAEWAGLSPNFTIYDDEDSVTLLMKAL 127 >gi|322417957|ref|YP_004197180.1| exodeoxyribonuclease V subunit beta [Geobacter sp. M18] gi|320124344|gb|ADW11904.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. M18] Length = 1116 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 10/148 (6%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT + LRL+L S +L +T T+AA E+ RV + + + Sbjct: 16 LIEASAGTGKTFTIAGVYLRLVLEEELDVSRILVVTFTEAATKELKERVRKKLKE-AESG 74 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 E ++E I G + SD KAR LL + + + + TIH FC+ ++Q P E+ Sbjct: 75 FEAGASEDFLIAGLLQSSSDHHKARRLLASAVRSFDEAAIFTIHGFCQRMLQDNPFESG- 133 Query: 154 TSHFAIADEE---QSKKLIEEAKKSTLA 178 ++ D E K++ E + Sbjct: 134 ----SLCDTELVTDQGKILTEIAQDYWR 157 >gi|223039071|ref|ZP_03609362.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter rectus RM3267] gi|222879710|gb|EEF14800.1| ATP-dependent DNA helicase, UvrD/REP family [Campylobacter rectus RM3267] Length = 931 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 5/129 (3%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + +LL+ A + LT TK AA EM R+++ Sbjct: 5 LALEASAGSGKTFALSVRFIAILLSGADAREITALTFTKKAANEMKERIVQTFLRLEEKG 64 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 E+ AE+ +I G ++ + LE LK+ T +F I++ F L + Sbjct: 65 AEL--AELEQILGAGRDEILAMRDARA-THFLE--SDLKIGTFDSFFVGILRSFCLNLGL 119 Query: 154 TSHFAIADE 162 ++ F +++ Sbjct: 120 SADFEVSEN 128 >gi|237749150|ref|ZP_04579630.1| DNA helicase II/ATP-dependent DNA helicase [Oxalobacter formigenes OXCC13] gi|229380512|gb|EEO30603.1| DNA helicase II/ATP-dependent DNA helicase [Oxalobacter formigenes OXCC13] Length = 757 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 76/223 (34%), Gaps = 46/223 (20%) Query: 17 ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 + EQL A P++SA + A AGSGKT +L R+ LL S ++ +T T A Sbjct: 5 LDNLNPEQLAAVTLPSQSALILAGAGSGKTRVLTTRIAWLLKTGQVSTSGIMAVTFTNKA 64 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R L + G+ + Sbjct: 65 AKEMLSR--------------------------------------LSVMFPVNARGMWIG 86 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H C +++ +A + F I D + K L + +D+++ + Sbjct: 87 TFHGLCNRLLRTHYQDAALPQSFNILDSQDQLS----TVKRLLKTNNIDDDKYPPRNLVY 142 Query: 195 ILEISNDEDIETLISDIISN--RTALKLIFFFFSYLWRRKIIE 235 + + + + + R ++L + R +++ Sbjct: 143 FINHAKESGYRASHVEPQDDYERKMVELYSLYEDQCQREGVVD 185 >gi|21233448|ref|NP_639365.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770412|ref|YP_245174.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris str. 8004] gi|21115293|gb|AAM43247.1| DNA helicase II [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575744|gb|AAY51154.1| DNA helicase II [Xanthomonas campestris pv. campestris str. 8004] Length = 728 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 41/169 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67 + S +D ++ + E + A P V A AGSGKT +L+ R+ L + + Sbjct: 2 DVSHLLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM HR + S Sbjct: 60 VTFTNKAAGEMRHRTDLQLRNGSR------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G+ + T H +++ +A + F + D + +L++ +S Sbjct: 84 --GMWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQSL 130 >gi|325130964|gb|EGC53691.1| DNA helicase II [Neisseria meningitidis OX99.30304] Length = 735 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPVDVR--------------------------------------AMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDGGDQLSLIKRLLKSL 134 >gi|157151050|ref|YP_001450617.1| ATP-dependent DNA helicase PcrA [Streptococcus gordonii str. Challis substr. CH1] gi|157075844|gb|ABV10527.1| ATP-dependent DNA helicase PcrA [Streptococcus gordonii str. Challis substr. CH1] Length = 762 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 46/195 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 4 LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R A L + Sbjct: 62 NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C I+++ +F I D + + L+ K L ++ LD + ++A Sbjct: 84 -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138 Query: 192 FYEILEISNDEDIET 206 + + ++ I+ Sbjct: 139 ILGTISNAKNDLIDE 153 >gi|316985163|gb|EFV64115.1| DNA helicase II [Neisseria meningitidis H44/76] gi|325141072|gb|EGC63575.1| DNA helicase II [Neisseria meningitidis CU385] gi|325199439|gb|ADY94894.1| DNA helicase II [Neisseria meningitidis H44/76] Length = 735 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPI--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDGGDQLSLIKRLLKSL 134 >gi|188579666|ref|YP_001923111.1| UvrD/REP helicase [Methylobacterium populi BJ001] gi|179343164|gb|ACB78576.1| UvrD/REP helicase [Methylobacterium populi BJ001] Length = 798 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 66/196 (33%), Gaps = 43/196 (21%) Query: 11 SETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 E +S EQ A + V A AG+GKT +L R+ L+ A P +L + Sbjct: 38 PEGASYLSGLNPEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIATGKARPYDILSV 97 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM HR+ +I Sbjct: 98 TFTNKAAREMKHRIGGLIGPAGE------------------------------------- 120 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 G + T HA I+++ + S F I + +L+++ +A +D Sbjct: 121 GMPWLGTFHAIGTKILRRHAELVGLKSDFTILGTDDQLRLMKQ----VIADQNIDEKRWP 176 Query: 189 KKAFYEILEISNDEDI 204 ++ ++ + + Sbjct: 177 ARSLAHTIDGWKNRGL 192 >gi|253998105|ref|YP_003050168.1| UvrD/REP helicase [Methylovorus sp. SIP3-4] gi|253984784|gb|ACT49641.1| UvrD/REP helicase [Methylovorus sp. SIP3-4] Length = 720 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 83/232 (35%), Gaps = 46/232 (19%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63 N+ + ++ ++ + E + P +SA + A AGSGKT +L R+ L+ P+ Sbjct: 2 NAQHPSTSLLEGLNDKQLE--AVTLPHQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPN 59 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 LL +T T AA EM R+ ++ Sbjct: 60 GLLAVTFTNKAAKEMLTRLSAMLPI----------------------------------- 84 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 G+ T H C +++ EA + + F I D + K + + +D Sbjct: 85 ---NVRGMWAGTFHGLCNRLLRAHHREALLPATFQILDTADQLS----SIKRLMKQMNVD 137 Query: 184 NNEELKKAFYEILEISNDEDIE-TLISDIISNRTALKLIFFFFSYLWRRKII 234 + + K + +E + + ++ ++ IF + +R+ + Sbjct: 138 DEKFPPKQVMGYINSCKEEGLRANAVDAYDAHSQRMREIFEEYDRQCQREGV 189 >gi|296123691|ref|YP_003631469.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776] gi|296016031|gb|ADG69270.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776] Length = 700 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 28/157 (17%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 ++ A + A AG+GKT LV RV L+ P +L LT T+ AAAEM Sbjct: 27 NPEQRAAAQAGPAPLLIIAGAGTGKTTTLVHRVAHLIATGIDPGEILLLTFTRRAAAEMI 86 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV +++ + I +I G+ T HA Sbjct: 87 RRVEQLLAVAAKSPG------IARIHGRHVVG----------------------GTFHAI 118 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 +++F + + F I D ++ L+ + + Sbjct: 119 ATRHLREFGQYLGLDADFTILDRSDAEDLMNQLRSEL 155 >gi|184155952|ref|YP_001844292.1| ATP-dependent DNA helicase [Lactobacillus fermentum IFO 3956] gi|183227296|dbj|BAG27812.1| ATP-dependent DNA helicase [Lactobacillus fermentum IFO 3956] Length = 756 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 41/168 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 ++ ++ ++ +SE +L ++ V A AGSGKT +L R+ L+ + P +L Sbjct: 2 QNQSMLEGMNDKQSEAVLTTE--GPLLVMAGAGSGKTRVLTHRIAYLIEERHVLPWHILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV +++ E Sbjct: 60 ITFTNKAAREMKERVAKLLG--------------------------------------EA 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + V T HA C I+++ + F IAD + + LI+ + Sbjct: 82 GNDVWVSTFHALCVRILRRDIEQLGYNRAFTIADTSEQRTLIKRICEE 129 >gi|15676157|ref|NP_273289.1| DNA helicase II [Neisseria meningitidis MC58] gi|7225454|gb|AAF40687.1| DNA helicase II [Neisseria meningitidis MC58] Length = 735 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 60/164 (36%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPI--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDGGDQLSLIKRLLKSL 134 >gi|227877012|ref|ZP_03995104.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus JV-V01] gi|227863383|gb|EEJ70810.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus JV-V01] Length = 753 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 40/162 (24%) Query: 17 ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 ++ +Q A + T V A AGSGKT +L +R+ L+ N P +L +T T A Sbjct: 12 LAGLNPQQKEAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKA 71 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM R +++ + + + Sbjct: 72 ASEMREREQKLLGPAA--------------------------------------NDIWMS 93 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA C I+++ + +F+IAD + L++ +K Sbjct: 94 TFHALCVRILRRDADKIGYGHNFSIADSAEQLTLVKHIEKDL 135 >gi|154494054|ref|ZP_02033374.1| hypothetical protein PARMER_03399 [Parabacteroides merdae ATCC 43184] gi|154086314|gb|EDN85359.1| hypothetical protein PARMER_03399 [Parabacteroides merdae ATCC 43184] Length = 1075 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 6/206 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AG+GKTH L L LL +L +T T A EM R+++ + + Sbjct: 7 ASAGAGKTHKLTGEYLTLLFTGPGAFRRILAVTFTNKATDEMKTRIVDELYNLASGRKSD 66 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 E+ K +A +LI IL + TI F + M+ F E + Sbjct: 67 Y-VELLKSAYSLTEIQVRKQAAQILIDILHDYSAFNISTIDRFFQQTMRAFTREIGLQGG 125 Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE-TLISDIIS-N 214 + I E + ++ A + L+ + +++L E + E L DI++ + Sbjct: 126 YGI--EMDQELVLTTAIDNLLSDLEKPESKDLLGWLLRFAEDKIESGGEWNLRKDIMALS 183 Query: 215 RTALKLIFFFFSYLWRRKIIEKSLWS 240 R K + FS R I +K Sbjct: 184 REVFKESYKAFSEAVGRDIEDKKALE 209 >gi|302346508|ref|YP_003814806.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845] gi|302150979|gb|ADK97240.1| UvrD/REP helicase [Prevotella melaninogenica ATCC 25845] Length = 1100 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 6/168 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95 A+AGSGKT L + L++ +L +T T A EM R+L + +H L D Sbjct: 11 ASAGSGKTFTLASEYITLVVKYPQDYKKILAVTFTNKATQEMKTRILSQLYGIAHKLPDS 70 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 E + P + A L + +VQTI AF +++++ E N+T+ Sbjct: 71 QAYYEQVLRKTGFPELTIRENAAEALSLLTHHYNEFRVQTIDAFFQSVLRNLARELNLTA 130 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + I ++ + +A + S+ + EE+ + ++ + ++D Sbjct: 131 NLRIDLNDEQVE--AQAVDELINSL--EEGEEVLTWIRDYIDKNIEDD 174 >gi|313200171|ref|YP_004038829.1| uvrd/rep helicase [Methylovorus sp. MP688] gi|312439487|gb|ADQ83593.1| UvrD/REP helicase [Methylovorus sp. MP688] Length = 720 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 83/232 (35%), Gaps = 46/232 (19%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63 N+ + ++ ++ + E + P +SA + A AGSGKT +L R+ L+ P+ Sbjct: 2 NAQHPSTSLLEGLNDKQLE--AVTLPHQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPN 59 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 LL +T T AA EM R+ ++ Sbjct: 60 GLLAVTFTNKAAKEMLTRLSAMLPI----------------------------------- 84 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 G+ T H C +++ EA + + F I D + K + + +D Sbjct: 85 ---NVRGMWAGTFHGLCNRLLRAHHREALLPATFQILDTADQLS----SIKRLMKQMNVD 137 Query: 184 NNEELKKAFYEILEISNDEDIE-TLISDIISNRTALKLIFFFFSYLWRRKII 234 + + K + +E + + ++ ++ IF + +R+ + Sbjct: 138 DEKFPPKQVMGYINSCKEEGLRANAVDAYDAHSQRMREIFEEYDRQCQREGV 189 >gi|298345243|ref|YP_003717930.1| ATP-dependent DNA helicase [Mobiluncus curtisii ATCC 43063] gi|298235304|gb|ADI66436.1| ATP-dependent DNA helicase [Mobiluncus curtisii ATCC 43063] Length = 877 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 41/165 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 + +D ++ + + + V A AGSGKT +L +R+ LL P +L +T Sbjct: 59 AAIVDGLN--PEQHAAVTHESGPLLVMAGAGSGKTRVLTRRIAWLLATERIRPWEVLAIT 116 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM RV ++ + Sbjct: 117 FTNKAAAEMRQRVESLVGNAAKY------------------------------------- 139 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + V T H+ C I++ +T F+I D +K L+ K Sbjct: 140 -MWVSTFHSACVRILRAEADTLGVTRSFSIYDTADTKALLNRIIK 183 >gi|148377565|ref|YP_001256441.1| ATP-dependent helicase [Mycoplasma agalactiae PG2] gi|148291611|emb|CAL58997.1| ATP dependent helicase [Mycoplasma agalactiae PG2] Length = 734 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 91/230 (39%), Gaps = 46/230 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + ++ + +++ ++E L D + A AGSGKT +L +++ L+ + P +L Sbjct: 10 QKAKIFESLNEEETEALYYFD--GPLRIIAGAGSGKTRVLTRKIAYLINVLGISPDHILA 67 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA+EMS RV + Sbjct: 68 VTFTNKAASEMSERVKQ------------------------------------YTNTKFN 91 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G ++ T H+ C I+++ N+ + F I D+ KK++++ K N + Sbjct: 92 KGTAEISTFHSLCARILREEAFHINLKNDFQIIDDNDKKKILKDIYKEHDLVPTDSNFKN 151 Query: 188 LKKAFYEILE--ISNDEDIETLI-----SDIISNRTALKLIFFFFSYLWR 230 L + F + ++DE+I I S+ + + I+ F++ + Sbjct: 152 LTRFFSWLKNKLYASDEEIIDFINSDPESEFYGDGETVVKIYNFYNEQLK 201 >gi|251809891|ref|ZP_04824364.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis BCM-HMP0060] gi|282874545|ref|ZP_06283430.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis SK135] gi|251806556|gb|EES59213.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis BCM-HMP0060] gi|281296684|gb|EFA89193.1| ATP-dependent DNA helicase PcrA [Staphylococcus epidermidis SK135] Length = 729 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 56/159 (35%), Gaps = 39/159 (24%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76 + + + A AGSGKT +L R+ LL + P +L +T T AA Sbjct: 7 NMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITFTNKAAK 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM+ RV ++ + + + + T Sbjct: 67 EMNARVEHLVGEEAQV--------------------------------------IWMSTF 88 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 H+ C I+++ I +F I D K +I++ KS Sbjct: 89 HSMCVRILRRDADRIGIERNFTIIDPTDQKSVIKDVLKS 127 >gi|326693832|ref|ZP_08230837.1| ATP-dependent DNA helicase PcrA [Leuconostoc argentinum KCTC 3773] Length = 748 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 60/166 (36%), Gaps = 40/166 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E I+ ++ ++E + + + A AGSGKT +L R+ L+ N P +L +T Sbjct: 5 ELINGMNDKQAEAVQTT--QGPLLIMAGAGSGKTRVLTHRIAHLVKDLNVMPWRILAITF 62 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ +++ + Sbjct: 63 TNKAAKEMRERIGALLSE-------------------------------------DVARD 85 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T HA I+++ ++ +F I D + L++ Sbjct: 86 IWVSTFHALAVRILRRDGENIGLSRNFTIIDTSAQRTLMKRVINDL 131 >gi|297568687|ref|YP_003690031.1| exodeoxyribonuclease V, beta subunit [Desulfurivibrio alkaliphilus AHT2] gi|296924602|gb|ADH85412.1| exodeoxyribonuclease V, beta subunit [Desulfurivibrio alkaliphilus AHT2] Length = 1303 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 86/207 (41%), Gaps = 8/207 (3%) Query: 26 LASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVL 83 A+ P+ + A+AG+GKT+ + LR +L P +L L+ T+AA AE+ R+ Sbjct: 9 AAALPSAPLQLIEASAGTGKTYSITSLYLRFILEQELPVEKILVLSFTEAATAELHGRLR 68 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + A + + +Q N + LL + V TIH+FC + Sbjct: 69 ARLQAAATAFQQGGGTNDPFLQELVRNSRRPERDLRLLQRAVSDIDQAAVTTIHSFCHRV 128 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 +QQ E+ + F + + I+E LA++ ++ L + + ++ + Sbjct: 129 LQQGAFESGMP--FELELLGEVTPFIDELIYDFLATLHHRDDPRLLALWRRVYSLT---E 183 Query: 204 IETLISDIISNRTALKLIFFFFSYLWR 230 + L+ + + +R L+ R Sbjct: 184 LRALVREGLRHR-HFPLLTGVSEQPHR 209 >gi|21244868|ref|NP_644450.1| DNA-dependent helicase II [Xanthomonas axonopodis pv. citri str. 306] gi|21110576|gb|AAM38986.1| DNA helicase II [Xanthomonas axonopodis pv. citri str. 306] Length = 730 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 41/169 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67 + S +D ++ + E + A P V A AGSGKT +L+ R+ L + + Sbjct: 4 DVSHLLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 61 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM HR + S Sbjct: 62 VTFTNKAAGEMRHRTDLQLRNGSR------------------------------------ 85 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G+ + T H +++ +A + F + D + +L++ ++ Sbjct: 86 --GMWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQAL 132 >gi|322385749|ref|ZP_08059393.1| ATP-dependent DNA helicase PcrA [Streptococcus cristatus ATCC 51100] gi|321270487|gb|EFX53403.1| ATP-dependent DNA helicase PcrA [Streptococcus cristatus ATCC 51100] Length = 762 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 72/198 (36%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R P D Sbjct: 59 TFTNKAAREMKER----------------------AAALNPATQDCL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L ++ LD + Sbjct: 84 ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++A + + ++ I+ Sbjct: 136 ERAILGTISNAKNDLIDE 153 >gi|150009169|ref|YP_001303912.1| ATP-dependent helicase [Parabacteroides distasonis ATCC 8503] gi|149937593|gb|ABR44290.1| ATP-dependent helicase [Parabacteroides distasonis ATCC 8503] Length = 1055 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 6/206 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AG+GKTH L L LL + +L +T T A EM R+++ + + Sbjct: 7 ASAGAGKTHKLTGEYLMLLFSQPGVYRRILAVTFTNKATDEMKTRIVQELYHLAS-GRAS 65 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 ++ + +AR +L+ IL + TI F + M+ F E + Sbjct: 66 DYIQLLSSAYSLTERQVREQARKILVAILHDYSAFNISTIDRFFQQTMRAFTREIGLQGG 125 Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS-NDEDIETLISDIIS-N 214 + I E + ++ EA + LA + +++L E D +L DI+S + Sbjct: 126 YGI--EMDQELVLTEAIDNLLADLEKPESKDLLGWLLRFAEDKIEDGGGWSLRQDIMSLS 183 Query: 215 RTALKLIFFFFSYLWRRKIIEKSLWS 240 R K + FS + I +K Sbjct: 184 REVFKESYKAFSEEVGKDIADKQALD 209 >gi|119896636|ref|YP_931849.1| ATP-dependent DNA helicase [Azoarcus sp. BH72] gi|119669049|emb|CAL92962.1| ATP-dependent DNA helicase [Azoarcus sp. BH72] Length = 700 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 60/170 (35%), Gaps = 36/170 (21%) Query: 13 TIDLISQTKSEQL-------LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 +D ++ + E + D V A AGSGKT+ L RV L+ A P + Sbjct: 15 YLDRLNAAQREAVEYGVRGNAGRDIPGPLLVIAGAGSGKTNTLAHRVAHLIANGADPGRI 74 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L LT ++ AA EM RV I+ + + + A + Sbjct: 75 LLLTFSRRAADEMGRRVQRILAQVAVDTPWLAQATLQWS--------------------- 113 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H +++++ + F I D E S L+ A+ Sbjct: 114 --------GTFHGIGARLLREYAGRIGLDPAFTIHDREDSADLMNLARHE 155 >gi|320581966|gb|EFW96185.1| DNA helicase and DNA-dependent ATPase [Pichia angusta DL-1] Length = 775 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 67/167 (40%), Gaps = 37/167 (22%) Query: 16 LISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 + Q A + P V A G+GKT ++ RV LLL + P ++ T TK Sbjct: 4 FVDDLNEHQRAAVTASPNGVVLVLAGPGTGKTKVITARVAYLLLHHKLPPQDVVVATFTK 63 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++ + + A+ LL Sbjct: 64 KAANEMVERLAVLLQPYPEID-----------------------AKKLL----------- 89 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 + T H+ C I++++ + + F IADE +K+LI++ ++ S Sbjct: 90 IGTFHSICVRILRKYGGLVGLNTGFKIADETDAKQLIKKVLRAMAES 136 >gi|171779530|ref|ZP_02920494.1| hypothetical protein STRINF_01375 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282147|gb|EDT47578.1| hypothetical protein STRINF_01375 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 783 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 76/206 (36%), Gaps = 50/206 (24%) Query: 7 FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 F + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P + Sbjct: 11 FYTMNPLLNGMNDKQAEAVKTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNI 68 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T AA EM R P +D Sbjct: 69 LAITFTNKAAREMRER----------------------AMALNPATADTL---------- 96 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 + T H+ C I+++ +F I D + + L+ K L ++ LD Sbjct: 97 -------IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPK 145 Query: 186 EELKKAFYEILEISNDEDIETLISDI 211 + ++A + + ++ L+ +I Sbjct: 146 KWNERAILGTISNAKND----LLDEI 167 >gi|118595284|ref|ZP_01552631.1| UvrD/REP helicase [Methylophilales bacterium HTCC2181] gi|118441062|gb|EAV47689.1| UvrD/REP helicase [Methylophilales bacterium HTCC2181] Length = 725 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 69/202 (34%), Gaps = 47/202 (23%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80 +Q + +SA + A AGSGKT +L R L+ A P +L +T T AA EM Sbjct: 19 KQQEAVTLSDQSALILAGAGSGKTKVLTSRFAWLIQNQIASPGGILAVTFTNKAAKEMLV 78 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ + P G+ V T H C Sbjct: 79 RISAQLPI--------------------------------------NPRGMWVGTFHGLC 100 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ +A++ F I D K A K + + +D + K + + Sbjct: 101 NRFLKKHYQDASLPQIFQILDSADQKS----AIKRVMKKMNIDEDFLPSKEVLYFINGNK 156 Query: 201 DEDIE----TLISDIISNRTAL 218 +E + DI + A+ Sbjct: 157 EEGVRSNAYKAFDDISEKKNAI 178 >gi|325475282|gb|EGC78467.1| UvrD/Rep family ATP-dependent DNA helicase [Treponema denticola F0402] Length = 1128 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 76/225 (33%), Gaps = 40/225 (17%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 +++ Q A +++ ++A AGSGKT +L R + ++ ++ LT T+ Sbjct: 7 NIMDSLNENQKNAVSVEKNSVIAAGAGSGKTKVLAARYVYFVVEKGVSVEKIIALTFTEK 66 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ + H + +E K+ Sbjct: 67 AAAEMHKRIYNELKKIDHPNA---------------------------RNAIEKFHLAKI 99 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TI +FC I + I+ F I D +S+KL + D + Sbjct: 100 STIDSFCNRIARDACKSFGISPDF-IIDNAESEKLAYRIGLDFFLKMRSDKTMQF----- 153 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 D I+ +S + L + +K +E + Sbjct: 154 ----FLGDNGIDDFVSGLFVK--LLSNYVLISRPIDFKKSLEAQI 192 >gi|254526415|ref|ZP_05138467.1| UvrD/REP helicase domain protein [Prochlorococcus marinus str. MIT 9202] gi|221537839|gb|EEE40292.1| UvrD/REP helicase domain protein [Prochlorococcus marinus str. MIT 9202] Length = 802 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 18/166 (10%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76 S + + V A AGSGKT L R+ L+ N P +L +T T AA Sbjct: 11 SLNNQQLQAVTHVYGPLLVVAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAK 70 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ ++ + K + ++++ + R L + T Sbjct: 71 EMKARLEVLLAQELAFNQFGQPWTTLKEIDQNQLRANVHQER---------LQNLWIGTF 121 Query: 137 HAFCEAIMQQFPLEANITS-------HFAIADEEQSKKLIEEAKKS 175 H+ +++ + +E F+I DE S+ L++E Sbjct: 122 HSLFSRLLR-YDIEKYTDPEGLKWTRQFSIYDETDSQTLVKEIISQ 166 >gi|307708679|ref|ZP_07645142.1| recombination helicase AddA [Streptococcus mitis NCTC 12261] gi|307615253|gb|EFN94463.1| recombination helicase AddA [Streptococcus mitis NCTC 12261] Length = 1216 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 85/222 (38%), Gaps = 29/222 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + ++ VSA+AGSGKT ++ +R+L L S L T T AA E+ Sbjct: 29 TAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGIEISQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + I+ Q ++ + D+ +HL + + P + T+ +F Sbjct: 89 ERLEKKISQ----------------QIQETHNVDLK--QHLGRQLADLPNAA-IGTMDSF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEIL-E 197 + + + +I +F I + + L++ + + + + K+ F +L Sbjct: 130 TQKFLGKHGYLLDIAPNFRILQNQSEQLLLK---NEVFHEVFEAHYQGKQKETFSHLLKN 186 Query: 198 ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLW 239 + E + K+ F S +K + +S Sbjct: 187 FAGRGKDERGLRQ-----QVYKIYDFLQSTSNPQKWLSESFL 223 >gi|289523886|ref|ZP_06440740.1| UvrD/REP helicase family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502542|gb|EFD23706.1| UvrD/REP helicase family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 1191 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 63/169 (37%), Gaps = 12/169 (7%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E I L + T +++ VSA AGSGKT L R L+ A +L Sbjct: 6 EAMAEIFLATATPNQREAVLAEDDLVVVSAGAGSGKTRTLSWRFAWLVATGRARHDEILT 65 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T+ AA EM ++L + W + ++ ++ L Sbjct: 66 ITFTEKAAQEMEDKILSTLGDW-----------LNAVRSSNLSRQKREDTEKRLELACSR 114 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 ++ TIH+F +++ + I+ F I +Q + A + Sbjct: 115 FDEAQISTIHSFAMNLLKSYSQFLEISPAFNIVTPQQEDLFYQSALSAL 163 >gi|222637066|gb|EEE67198.1| hypothetical protein OsJ_24304 [Oryza sativa Japonica Group] Length = 1186 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 45/194 (23%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 +++ E + ++ + E SD T + A GSGKT +V RVL LL PS +L Sbjct: 278 KKYYEYLQSLNDRQREA-ACSDVTIPLMIVAGPGSGKTSTMVGRVLTLLKEEFPPSNILA 336 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAA+EM R+ ++ Sbjct: 337 MTFTTAAASEMRDRIGTVVGKAVAKE---------------------------------- 362 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE-------QSKKLIEEAKKSTLASI 180 + + T H+FC + + + TS F I ++++L+E K + L Sbjct: 363 ---IVISTFHSFCLQLCRTHAEKLGRTSEFIIYGNGQQRRAVIEAERLLESDKNNGLGDA 419 Query: 181 MLDNNEELKKAFYE 194 + + ++K +F + Sbjct: 420 NKNCDGDIKNSFKD 433 >gi|159045024|ref|YP_001533818.1| DNA helicase II [Dinoroseobacter shibae DFL 12] gi|157912784|gb|ABV94217.1| DNA helicase II [Dinoroseobacter shibae DFL 12] Length = 807 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 69/193 (35%), Gaps = 44/193 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ + + + + D + A AG+GKT L R+ LLL A P+ +L +T T Sbjct: 38 YLDTLNPAQRQAVESLD--GPVLMLAGAGTGKTKALTCRIAHLLLTGTARPNEILAVTFT 95 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ G Sbjct: 96 NKAAREMKERVATLMNQPVE-------------------------------------GMP 118 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T HA ++++ + S+F I D + +L+++ + + +D + Sbjct: 119 WLGTFHAIGVKLLRRHAELVGLKSNFTILDTDDQVRLLKQ----IIVAENIDEKRWPARQ 174 Query: 192 FYEILEISNDEDI 204 I++ + Sbjct: 175 LAHIIDGWKNRAW 187 >gi|301310959|ref|ZP_07216888.1| UvrD/REP helicase domain protein [Bacteroides sp. 20_3] gi|300831022|gb|EFK61663.1| UvrD/REP helicase domain protein [Bacteroides sp. 20_3] Length = 1055 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 6/206 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AG+GKTH L L LL + +L +T T A EM R+++ + + Sbjct: 7 ASAGAGKTHKLTGEYLMLLFSQPGAYRRILAVTFTNKATDEMKTRIVQELYHLASGRASD 66 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 ++ + +AR +L+ IL + TI F + M+ F E + Sbjct: 67 Y-IQLLSSAYSLTERQVREQARKILVAILHDYSAFNISTIDRFFQQTMRAFTREIGLQGG 125 Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS-NDEDIETLISDIIS-N 214 + I E + ++ EA + LA + +++L E D +L DI+S + Sbjct: 126 YGI--EMDQELVLTEAIDNLLADLEKPESKDLLGWLLRFAEDKIEDGGGWSLRKDIMSLS 183 Query: 215 RTALKLIFFFFSYLWRRKIIEKSLWS 240 R K + FS + I +K Sbjct: 184 REVFKESYKAFSEEVGKDIADKQALD 209 >gi|256844677|ref|ZP_05550162.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus 125-2-CHN] gi|256613218|gb|EEU18422.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus 125-2-CHN] Length = 748 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 40/162 (24%) Query: 17 ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 ++ +Q A + T V A AGSGKT +L +R+ L+ N P +L +T T A Sbjct: 7 LAGLNPQQKEAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM R +++ + + + Sbjct: 67 ASEMREREQKLLGPAA--------------------------------------NDIWMS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA C I+++ + +F+IAD + L++ +K Sbjct: 89 TFHALCVRILRRDADKIGYGHNFSIADSAEQLTLVKHIEKDL 130 >gi|256850561|ref|ZP_05555987.1| ATP-dependent helicase [Lactobacillus crispatus MV-1A-US] gi|256712584|gb|EEU27579.1| ATP-dependent helicase [Lactobacillus crispatus MV-1A-US] Length = 748 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 40/162 (24%) Query: 17 ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 ++ +Q A + T V A AGSGKT +L +R+ L+ N P +L +T T A Sbjct: 7 LAGLNPQQKEAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM R +++ + + + Sbjct: 67 ASEMREREQKLLGPAA--------------------------------------NDIWMS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA C I+++ + +F+IAD + L++ +K Sbjct: 89 TFHALCVRILRRDADKIGYGHNFSIADSAEQLTLVKHIEKDL 130 >gi|313891747|ref|ZP_07825352.1| putative ATP-dependent DNA helicase PcrA [Dialister microaerophilus UPII 345-E] gi|313119741|gb|EFR42928.1| putative ATP-dependent DNA helicase PcrA [Dialister microaerophilus UPII 345-E] Length = 735 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 57/163 (34%), Gaps = 40/163 (24%) Query: 16 LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 ++ +Q A + + A AGSGKT L R+ +L P +L +T T A Sbjct: 4 YLNSLNEQQRKAVEHLYGPVLIMAGAGSGKTKALTCRIAHMLNNGIKPEEILAITFTNKA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ + + + Sbjct: 64 AQEMKERVQNLVGVIA--------------------------------------NKIWMY 85 Query: 135 TIHAFCEAIMQQFPLEANI-TSHFAIADEEQSKKLIEEAKKST 176 T H+F +++ I TS F I D + SK+L++ K Sbjct: 86 TFHSFGVRFLRREIENGGIYTSKFTIYDSDDSKQLLKNILKEL 128 >gi|296876758|ref|ZP_06900806.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC 15912] gi|296432260|gb|EFH18059.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC 15912] Length = 767 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 46/203 (22%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63 N E + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P Sbjct: 2 NGENEMNPLLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPW 59 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L +T T AA EM R ++ A Sbjct: 60 NILAITFTNKAAREMKERAYQLNPATQDCL------------------------------ 89 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 + T H+ C I+++ +F I D + + L+ K L S+ LD Sbjct: 90 ---------IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKSLNLD 136 Query: 184 NNEELKKAFYEILEISNDEDIET 206 + ++ + + ++ I+ Sbjct: 137 PKKWNERTILGTISNAKNDLIDE 159 >gi|299131903|ref|ZP_07025098.1| UvrD/REP helicase [Afipia sp. 1NLS2] gi|298592040|gb|EFI52240.1| UvrD/REP helicase [Afipia sp. 1NLS2] Length = 830 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 69/191 (36%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 +S EQ A + V A AG+GKT +L R+ +L A P +L +T T Sbjct: 34 YLSALNPEQREAVETLDGPVLVLAGAGTGKTRVLTSRIAHILSQGRARPFEILSVTFTNK 93 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM HR+ E++ G + Sbjct: 94 AAREMKHRLGEMLGQTVE-------------------------------------GMPWL 116 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T HA I++ A + S+F + D + +L+++ L + +D+ + Sbjct: 117 GTFHAIAGRILRVHAELAQLKSNFTVLDVDDQIRLLKQ----LLQAEGIDDKRWPARMLA 172 Query: 194 EILEISNDEDI 204 +++ + + Sbjct: 173 GLIDGWKNRGL 183 >gi|183221122|ref|YP_001839118.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911213|ref|YP_001962768.1| ATP-dependent DNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775889|gb|ABZ94190.1| ATP-dependent DNA helicase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779544|gb|ABZ97842.1| ATP-dependent DNA helicase PcrA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 664 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 41/182 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 ++++ + P V A AG+GKT LV R+ L+ +P ++L LT T+ AA EM Sbjct: 6 NEAQKQVVLAPKGPILVVAGAGTGKTKTLVHRLAHLVKNGTNPESILLLTFTRRAAKEML 65 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R +I+ ++ T H+F Sbjct: 66 GRASQILD--------------------------------------HRMMSVRGGTFHSF 87 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL---ASIMLDNNEELKKAFYEIL 196 C ++++ ++ SHF I DEE + + A+ + + E L + F Sbjct: 88 CHLFLRKYANALSLDSHFTILDEEDTIGFVGMARDQVVTTGTKVRFPKKETLAEIFSSCF 147 Query: 197 EI 198 + Sbjct: 148 NL 149 >gi|283780044|ref|YP_003370799.1| UvrD/REP helicase [Pirellula staleyi DSM 6068] gi|283438497|gb|ADB16939.1| UvrD/REP helicase [Pirellula staleyi DSM 6068] Length = 1049 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 89/200 (44%), Gaps = 13/200 (6%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT+ L L+LL+ P +L T T+ AA E+ R+L + + Sbjct: 15 VVIRASAGTGKTYRLTGHYLQLLVDGVPPRNILATTFTRKAAGEIFDRILLRLAQAALTD 74 Query: 94 D--EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 + + L+A I + Q ++K + LL +IL L+V T+ +F I LE Sbjct: 75 EACQQLAAAIARPQ------LTVTKCQELLTSILSQLDALQVGTLDSFFARIATSLALEL 128 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 ++ ++I + E+ ++ +A ++ L + +L + + + L+ D Sbjct: 129 SLPLGWSICEYEEDLRMRRDAIEAVLD---TEKTSDLLTLVNLLFKGEARRGVSDLVLDT 185 Query: 212 ISNRTALKLIFFFFSYLWRR 231 ++ + L W++ Sbjct: 186 VN--SLYSLYRETSRDAWQK 203 >gi|262384055|ref|ZP_06077191.1| ATP-dependent helicase [Bacteroides sp. 2_1_33B] gi|262294953|gb|EEY82885.1| ATP-dependent helicase [Bacteroides sp. 2_1_33B] Length = 1055 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 6/206 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AG+GKTH L L LL + +L +T T A EM R+++ + + Sbjct: 7 ASAGAGKTHKLTGEYLMLLFSQPGAYRRILAVTFTNKATDEMKTRIVQELYHLAS-GRAS 65 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 ++ + +AR +L+ IL + TI F + M+ F E + Sbjct: 66 DYIQLLSSAYSLTERQVREQARKILVAILHDYSAFNISTIDRFFQQTMRAFTREIGLQGG 125 Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS-NDEDIETLISDIIS-N 214 + I E + ++ EA + LA + +++L E D +L DI+S + Sbjct: 126 YGI--EMDQELVLTEAIDNLLADLEKPESKDLLGWLLRFAEDKIEDGGGWSLRKDIMSLS 183 Query: 215 RTALKLIFFFFSYLWRRKIIEKSLWS 240 R K + FS + I +K Sbjct: 184 REVFKESYKAFSEEVGKDIADKQALD 209 >gi|309800338|ref|ZP_07694507.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis SK1302] gi|308116035|gb|EFO53542.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis SK1302] Length = 149 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 46/187 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 +E + ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNELLKGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R G P D Sbjct: 59 TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKNGM 135 Query: 189 KKAFYEI 195 F+E+ Sbjct: 136 NGLFWEL 142 >gi|309389840|gb|ADO77720.1| ATP-dependent DNA helicase PcrA [Halanaerobium praevalens DSM 2228] Length = 715 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 61/168 (36%), Gaps = 41/168 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 E S+ + ++ ++ V A AGSGKT +L +R+ L+ +L Sbjct: 2 EDSQILKDLN--PAQAKAVKHHQGPELVLAGAGSGKTRVLTRRIGYLINHYQVSAYNILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV II T Sbjct: 60 VTFTNKAANEMKERVKNIIGV--------------------------------------T 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 L V T H+FC I+++ + +F I D +KL++E KS Sbjct: 82 NTNLWVSTFHSFCVRILRREAEKLGYNKNFVIFDSLDQRKLVKEILKS 129 >gi|121634106|ref|YP_974351.1| DNA helicase II [Neisseria meningitidis FAM18] gi|120865812|emb|CAM09544.1| DNA helicase II [Neisseria meningitidis FAM18] gi|325131618|gb|EGC54325.1| DNA helicase II [Neisseria meningitidis M6190] gi|325139127|gb|EGC61673.1| DNA helicase II [Neisseria meningitidis ES14902] Length = 735 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPVDVR--------------------------------------AMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDGGDQLSLIKRLLKSL 134 >gi|329121051|ref|ZP_08249682.1| ATP-dependent DNA helicase PcrA [Dialister micraerophilus DSM 19965] gi|327471213|gb|EGF16667.1| ATP-dependent DNA helicase PcrA [Dialister micraerophilus DSM 19965] Length = 735 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 57/163 (34%), Gaps = 40/163 (24%) Query: 16 LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 ++ +Q A + + A AGSGKT L R+ +L P +L +T T A Sbjct: 4 YLNSLNEQQRKAVEHLYGPVLIMAGAGSGKTKALTCRIAHMLNNGIKPEEILAITFTNKA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ + + + Sbjct: 64 AQEMKERVQNLVGVIA--------------------------------------NKIWMY 85 Query: 135 TIHAFCEAIMQQFPLEANI-TSHFAIADEEQSKKLIEEAKKST 176 T H+F +++ I TS F I D + SK+L++ K Sbjct: 86 TFHSFGVRFLRREIENGGIYTSKFTIYDSDDSKQLLKNILKEL 128 >gi|260881142|ref|ZP_05893318.1| ATP-dependent DNA helicase PcrA [Mitsuokella multacida DSM 20544] gi|260849631|gb|EEX69638.1| ATP-dependent DNA helicase PcrA [Mitsuokella multacida DSM 20544] Length = 773 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 60/167 (35%), Gaps = 40/167 (23%) Query: 12 ETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 + +D+ S Q A + + A AGSGKT +L R+ LL P ++L +T Sbjct: 3 DILDIFSGLNPAQKKAVAHTEGPLLIMAGAGSGKTKVLTCRIANLLAQGVAPYSILAITF 62 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV +I + Sbjct: 63 TNKAATEMRERVDRMIGDAAK--------------------------------------D 84 Query: 131 LKVQTIHAFCEAIMQQFPLEANI-TSHFAIADEEQSKKLIEEAKKST 176 + + T H+FC +++ I +F I D S+ +I+E K Sbjct: 85 VWLSTFHSFCARFLRREIEATGIYKRNFVIYDASDSQTVIKECLKEM 131 >gi|320531567|ref|ZP_08032515.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337] gi|320136218|gb|EFW28218.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337] Length = 692 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 53/147 (36%), Gaps = 39/147 (26%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 + A AGSGKT +L R+ RL+ A P +L +T T AAAEM RV ++ Sbjct: 1 GAPLLIIAGAGSGKTRVLTHRIARLIATGRARPGEILAITFTNKAAAEMRERVTALVGPA 60 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + V T H+ C I+++ Sbjct: 61 GE--------------------------------------RMWVSTFHSACVRILRREHE 82 Query: 150 EANITSHFAIADEEQSKKLIEEAKKST 176 A + S F+I D S +LI + Sbjct: 83 AAGLRSTFSIYDAADSTRLITLIVREL 109 >gi|325687804|gb|EGD29824.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis SK72] Length = 762 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 73/205 (35%), Gaps = 45/205 (21%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 4 LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAITFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R A L E Sbjct: 62 NKAAREMRER-----------------------------------AEKLKTEAQECL--- 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C ++++ +F I + + L++ + ++ D + ++A Sbjct: 84 -ITTFHSLCIRVLRREADHIGYNRNFTIVGPSEQRTLMKRILNNI--NLNSDEEKWNERA 140 Query: 192 FY-EILEISNDEDIETLISDIISNR 215 I ND E +++ ++ Sbjct: 141 ILGTISNAKNDLIDEEAYANLAGDK 165 >gi|300694290|ref|YP_003750263.1| ATP-dependent DNA helicase ii protein (uvrd) [Ralstonia solanacearum PSI07] gi|299076327|emb|CBJ35640.2| putative atp-dependent dna helicase II protein (uvrD) [Ralstonia solanacearum PSI07] Length = 710 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 62/171 (36%), Gaps = 31/171 (18%) Query: 15 DLISQTKSEQLLASDP---------TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 D ++Q +Q A + T V A AGSGKTH L RV L+ A P + Sbjct: 15 DYLAQLNDQQRQAVEFGISGADAAETGPLLVLAGAGSGKTHTLGWRVAHLVANGADPQRI 74 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L LT ++ AA+E+S R ++ H S SA T Q P Sbjct: 75 LLLTFSRRAASELSSRAGHLLARAMHGSTGARSAAGTTYQTALP---------------- 118 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++++ + F I D S L+ + Sbjct: 119 ------WAGTFHGIGARLLREYAQRIGLAPDFTIHDRSDSADLLNVVRHEL 163 >gi|295692389|ref|YP_003600999.1| ATP-dependent DNA helicase pcra [Lactobacillus crispatus ST1] gi|295030495|emb|CBL49974.1| ATP-dependent DNA helicase PcrA [Lactobacillus crispatus ST1] Length = 748 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 40/162 (24%) Query: 17 ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 ++ +Q A + T V A AGSGKT +L +R+ L+ N P +L +T T A Sbjct: 7 LAGLNPQQKEAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+EM R +++ + + + Sbjct: 67 ASEMREREQKLLGPAA--------------------------------------NDIWMS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA C I+++ + +F+IAD + L++ +K Sbjct: 89 TFHALCVRILRRDADKIGYGHNFSIADSAEQLTLVKHIEKDL 130 >gi|15806776|ref|NP_295498.1| DNA helicase II [Deinococcus radiodurans R1] gi|6459549|gb|AAF11329.1|AE002019_2 DNA helicase II [Deinococcus radiodurans R1] Length = 745 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 42/164 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 + + ++ T+++ A T A V A AGSGKT L+ R+ L+ HP +L +T Sbjct: 7 PDLLQALNPTQAQ--AADHFTGPALVIAGAGSGKTRTLIYRIAHLIGHYGVHPGEILAVT 64 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM R ++ G Sbjct: 65 FTNKAAAEMRERAGHLVPGA---------------------------------------G 85 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 L + T H+ I++ + + F I D++ +I+E Sbjct: 86 DLWMSTFHSAGVRILRTYGEHIGLRRGFVIYDDDDQLDIIKEVM 129 >gi|228990221|ref|ZP_04150190.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus pseudomycoides DSM 12442] gi|228769504|gb|EEM18098.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus pseudomycoides DSM 12442] Length = 1182 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 70/175 (40%), Gaps = 32/175 (18%) Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122 LL +T T AAA EM +R+ E + K+ +P + K LL Sbjct: 2 DRLLVVTFTNAAAQEMKNRIGEAL---------------EKVLIDEPGSGHVRKQLSLL- 45 Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 + TIH+FC +++ + ++ F IA++ +++ L EE L Sbjct: 46 ------NKASISTIHSFCLQVIRTYYYMLDVDPRFRIANQTENELLKEEVLDDILEE--- 96 Query: 183 DNNEELKKAFYEILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + E F+E+++ ++D + L R L L ++ K ++K Sbjct: 97 EYGIEGNDIFFELVDRYTSDRSDDDL------QRMILALHTESRAHPDPEKWLDK 145 >gi|310657865|ref|YP_003935586.1| ATP-dependent DNA helicase [Clostridium sticklandii DSM 519] gi|308824643|emb|CBH20681.1| ATP-dependent DNA helicase [Clostridium sticklandii] Length = 720 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 55/163 (33%), Gaps = 39/163 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 +DL K + + + A AGSGKT ++ R+ ++ P ++L +T T Sbjct: 1 MDLTGLNKDQLSAVTRVEGPLLILAGAGSGKTRVITYRIAHMIEDLKISPYSILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV +I + + Sbjct: 61 KAAKEMKERVSALIGDRAK--------------------------------------DMW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + T H+ C I+++ F I D + LI+E K Sbjct: 83 ISTFHSLCVRILRRDIERIGYNRSFVIYDTQDQLSLIKECIKE 125 >gi|294625145|ref|ZP_06703789.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600564|gb|EFF44657.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 728 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 41/169 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67 + S +D ++ + E + A P V A AGSGKT +L+ R+ L + + Sbjct: 2 DVSHLLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM HR + S Sbjct: 60 VTFTNKAAGEMRHRTDLQLRNGSR------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G+ + T H +++ +A + F + D + +L++ ++ Sbjct: 84 --GMWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQAL 130 >gi|188579188|ref|YP_001916117.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523640|gb|ACD61585.1| DNA helicase II [Xanthomonas oryzae pv. oryzae PXO99A] Length = 728 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 41/169 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67 + S +D ++ + E + A P V A AGSGKT +L+ R+ L + + Sbjct: 2 DVSHLLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM HR + S Sbjct: 60 VTFTNKAAGEMRHRTDLQLRNGSR------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G+ + T H +++ +A + F + D + +L++ ++ Sbjct: 84 --GMWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQAL 130 >gi|329960510|ref|ZP_08298898.1| UvrD/REP helicase [Bacteroides fluxus YIT 12057] gi|328532740|gb|EGF59527.1| UvrD/REP helicase [Bacteroides fluxus YIT 12057] Length = 1156 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 89/213 (41%), Gaps = 15/213 (7%) Query: 34 AWVSANAGSGKTHIL-VQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L V+ + L+L +L +T T A AEM R+L+ + Sbjct: 78 LVYKASAGSGKTFTLAVEYIKHLILNPRAYRQILAVTFTNKATAEMKERILQQLYGIWKS 137 Query: 93 SDEI------LSAEITKIQGKKPNKSDMS-KARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + E+ +I G + +++ +A L +L +V+TI +F +++M+ Sbjct: 138 DPASEAYLSRIQEELKRIDGGTLDTAEIRQRAGMALQYMLHDYSRFRVETIDSFFQSVMR 197 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 E ++ + I E + +++ +A S + + +L+ N+ + Sbjct: 198 NLARELELSPNLNI--ELNNTEVLSDAVDSLIEKLTS-----TSPVLAWLLDYINERIAD 250 Query: 206 TLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 ++ + F SY+ R + + + L Sbjct: 251 DKRWNVSNEVKNFGRNIFDESYIERGEGLRQCL 283 >gi|253698974|ref|YP_003020163.1| exodeoxyribonuclease V subunit beta [Geobacter sp. M21] gi|251773824|gb|ACT16405.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. M21] Length = 1129 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 10/161 (6%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT + LRL+L S +L +T T+AA E+ R+ + + Sbjct: 16 LIEASAGTGKTFTIAGVYLRLVLEEKFDVSRILVVTFTEAATKELKERIRNKLKE-AENG 74 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 +AE I G + D S+AR LL + + + + TIH FC+ ++Q P E+ Sbjct: 75 FLTGAAEDFLIDGLLKSTPDHSEARRLLGSAVRSFDEAAIFTIHGFCQRMLQDNPFESG- 133 Query: 154 TSHFAIADEE---QSKKLIEEAKKSTLASIMLDNNEELKKA 191 ++ D E K++ E + E+ A Sbjct: 134 ----SLCDTELVTDQGKILMEIAQDYWRINCYGQPEDRIAA 170 >gi|330836710|ref|YP_004411351.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374] gi|329748613|gb|AEC01969.1| UvrD/REP helicase [Spirochaeta coccoides DSM 17374] Length = 668 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 68/190 (35%), Gaps = 46/190 (24%) Query: 13 TIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 + DL + EQ L AS + A AGSGKT +L RV +L P ++L LT T Sbjct: 2 SFDLRRELNPEQYLAASTIDGPLLIIAGAGSGKTRMLTFRVAHMLENGISPHSILALTFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM+ R+ ++ L Sbjct: 62 NKAAAEMAERIHDLTGVSRK--------------------------------------EL 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 T HAF +++++ +F I D + L+ + + EE Sbjct: 84 MATTFHAFGMKLLKKYIHLLGYKDNFTIFDASDVQTLLSDVIHNL-------GYEEADYN 136 Query: 192 FYEILEISND 201 F+E+ + +D Sbjct: 137 FFELASLFSD 146 >gi|158319600|ref|YP_001512107.1| ATP-dependent DNA helicase PcrA [Alkaliphilus oremlandii OhILAs] gi|158139799|gb|ABW18111.1| ATP-dependent DNA helicase PcrA [Alkaliphilus oremlandii OhILAs] Length = 739 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 52/162 (32%), Gaps = 39/162 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 + ++ V A AGSGKT +L R+ L+ P +L +T T A Sbjct: 19 YHTLNPMQKNAVLTTEGPVLVLAGAGSGKTRVLTHRIAYLVEEKGVSPYHILAITFTNKA 78 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ + L V Sbjct: 79 AKEMKERVEALLGDYHR--------------------------------------DLWVS 100 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ C I++ + +F I D + L+++ K Sbjct: 101 TFHSSCVRILRMEIDKLGYEKNFVIYDTTDQQVLMKDCLKKF 142 >gi|166710261|ref|ZP_02241468.1| DNA-dependent helicase II [Xanthomonas oryzae pv. oryzicola BLS256] Length = 728 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 41/169 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67 + S +D ++ + E + A P V A AGSGKT +L+ R+ L + + Sbjct: 2 DVSHLLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM HR + S Sbjct: 60 VTFTNKAAGEMRHRTDLQLRNGSR------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G+ + T H +++ +A + F + D + +L++ ++ Sbjct: 84 --GMWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQAM 130 >gi|33860862|ref|NP_892423.1| UvrD/REP helicase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633804|emb|CAE18763.1| UvrD/REP helicase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 802 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 80/216 (37%), Gaps = 28/216 (12%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76 S ++ V A AGSGKT L R+ L+ N P +L +T T AA Sbjct: 11 SLNNAQLNAVKHINGPLLVVAGAGSGKTKALTHRIANLIENNSVDPHNILAVTFTNKAAK 70 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ ++ L+ K + ++++ + R L + T Sbjct: 71 EMKARLQVLLAQEIALNQFGQPWSTLKEFDQNQLRTNIDQER---------LRDLWIGTF 121 Query: 137 HAFCEAIMQQFPLEANITS-------HFAIADEEQSKKLIEEAKKSTLA-SIMLDNNEEL 188 HA +++ + +E F+I DE S+ L++E ++ + +++ Sbjct: 122 HALFSRLLR-YDIEKYQDPEGLTWTRQFSIYDETDSQTLVKEIVGQDMSLDPKRFDPKKI 180 Query: 189 KKAFYEI---------LEISNDEDIETLISDIISNR 215 K+A LE D + +I+D Sbjct: 181 KRAISNAKNQCFTANDLEEKADNHFDKVIADAYRRY 216 >gi|319405990|emb|CBI79622.1| DNA helicase II [Bartonella sp. AR 15-3] Length = 781 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 68/186 (36%), Gaps = 42/186 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 ++ + V A AG+GKT +L R+ +L AHP +L +T T AA EM Sbjct: 13 NPEQKQAVINTEGPILVLAGAGTGKTRVLTTRISHILHLGLAHPKQILAVTFTNKAAHEM 72 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ E++ + + T H+ Sbjct: 73 KIRIGELVGKTVNDMP-------------------------------------WLGTFHS 95 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ ++ S+F I D + +L+++ + + LD+ + +++ Sbjct: 96 TGAKILRRHAELVDLKSNFTILDRDDVTRLLKQ----LIQAEGLDDKRWPARNLAAMIDS 151 Query: 199 SNDEDI 204 ++ + Sbjct: 152 WKNQGL 157 >gi|303237262|ref|ZP_07323832.1| putative ATP-dependent helicase PcrA [Prevotella disiens FB035-09AN] gi|302482649|gb|EFL45674.1| putative ATP-dependent helicase PcrA [Prevotella disiens FB035-09AN] Length = 841 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 39/175 (22%) Query: 2 IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61 + N+ ++ E + +++ + + ++ V A AGSGKT +L ++ L++ Sbjct: 1 MQDNTEEKIKELLSGLNENQRAAVEYC--QGASLVVAGAGSGKTRVLTYKIAYLMMCGVL 58 Query: 62 PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121 P +L LT T AA EM R+ ++++ A+ L Sbjct: 59 PYRILALTFTNKAAKEMQSRIGQLVSH--------------------------DDAKQLY 92 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ + +F I DE S+ LI+ KS Sbjct: 93 M-----------GTFHSVFSRILRAEADKLGYERNFTIYDESDSRSLIKTIVKSL 136 >gi|169342971|ref|ZP_02863999.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens C str. JGS1495] gi|169298880|gb|EDS80954.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens C str. JGS1495] Length = 876 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 47/212 (22%), Positives = 91/212 (42%), Gaps = 49/212 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74 +I+ + +Q + ++ + + A+AG+GKT+ L +RV ++ PS +LC+T T A Sbjct: 7 MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 EMS RV++I+ + + ++ Sbjct: 67 CKEMSDRVMKIVGGEAK--------------------------------------EITIR 88 Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190 T H+FC +++ + +I S F I DE+ K++I + S ++ N +++K Sbjct: 89 TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCKEVINKLSYYYATSNLMATNMQIQKVID 148 Query: 191 ------AFYEILEISNDEDIETLISDIISNRT 216 A E LE ++ +T+I +I R Sbjct: 149 FIKVERARIETLEDRVLDEYKTVIDEIFKFRE 180 >gi|51598860|ref|YP_073048.1| rep helicase, single-stranded DNA-dependent ATPase [Borrelia garinii PBi] gi|51573431|gb|AAU07456.1| rep helicase, single-stranded DNA-dependent ATPase [Borrelia garinii PBi] Length = 658 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 80/232 (34%), Gaps = 65/232 (28%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S + + + + + A AGSGKT ++ R+ LLL +L LT T AA E Sbjct: 9 SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQKEILALTFTNKAANE 68 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ +I+ L + T H Sbjct: 69 MKDRIKKILK--------------------------------------NPLSNLMISTFH 90 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST--------LASI--------- 180 AF +++ +F+I D+ L++E L+S+ Sbjct: 91 AFGLFFLKENYKLLGYKKNFSIYDDNDRISLLKEILLDEGLFNKKVSLSSLSNAISLLKN 150 Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALKLIF 222 + + + + + + + L + N D + LI +++SN + ++ + Sbjct: 151 GILTFDDLKEEDIHIFRLYEDRLRLYNSFDFDDLILKPKELLSNNSDIRSKY 202 >gi|218528416|ref|YP_002419232.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4] gi|218520719|gb|ACK81304.1| UvrD/REP helicase [Methylobacterium chloromethanicum CM4] Length = 795 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 43/196 (21%) Query: 11 SETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 E +S EQ A + V A AG+GKT +L R+ L+ A P +L + Sbjct: 38 PEGASYLSGLNPEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIATGKARPYDILSV 97 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM HR+ +I Sbjct: 98 TFTNKAAREMKHRIGGLIGPAGE------------------------------------- 120 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 G + T HA I+++ + S F I + +L+++ ++ +D Sbjct: 121 GMPWLGTFHAIGTKILRRHAELVGLRSDFTILGTDDQLRLMKQ----VISDQNIDEKRWP 176 Query: 189 KKAFYEILEISNDEDI 204 ++ ++ + + Sbjct: 177 ARSLAHTIDGWKNRGL 192 >gi|116617682|ref|YP_818053.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096529|gb|ABJ61680.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 766 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 45/191 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 I ++ +SE + ++ + A AGSGKT +L R+ L+ N +P +L +T T Sbjct: 23 LIQGMNDKQSEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAHLVQDKNVYPWRILAITFT 80 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +++ D AR + Sbjct: 81 NKAAREMRERIAQLV--------------------------DPEIARE-----------I 103 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKK 190 V T HA I+++ + +F I D + L+ K + + LD N+ + + Sbjct: 104 WVSTFHAMAVRILRRDGERIGLARNFTIIDTSAQRTLM----KRVINDLNLDTNQYDPRT 159 Query: 191 AFYEILEISND 201 + ND Sbjct: 160 ILGTVSNAKND 170 >gi|123967864|ref|YP_001008722.1| UvrD/REP helicase [Prochlorococcus marinus str. AS9601] gi|123197974|gb|ABM69615.1| UvrD/REP helicase [Prochlorococcus marinus str. AS9601] Length = 802 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 18/166 (10%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76 S + V A AGSGKT L R+ L+ N P +L +T T AA Sbjct: 11 SLNNQQLQAVKHVYGPLLVVAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAK 70 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ ++ + K + ++++ K R L + T Sbjct: 71 EMKARLEVLLAQELAFNQFGQPWTTLKEIDQNQLRTNVHKDR---------LQNLWIGTF 121 Query: 137 HAFCEAIMQQFPLEANITS-------HFAIADEEQSKKLIEEAKKS 175 H+ +++ + +E F+I DE S+ L++E Sbjct: 122 HSLFSRLLR-YDIEKYTDPEGLKWTRQFSIYDETDSQTLVKEIISQ 166 >gi|217976782|ref|YP_002360929.1| UvrD/REP helicase [Methylocella silvestris BL2] gi|217502158|gb|ACK49567.1| UvrD/REP helicase [Methylocella silvestris BL2] Length = 790 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 67/194 (34%), Gaps = 44/194 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ + + A D V A AG+GKT +L R+ +L A +L +T T Sbjct: 33 YLDGLNPEQRAAVEAID--GPVLVLAGAGTGKTRVLTTRIAHILAEGRARAHEILAVTFT 90 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV + G Sbjct: 91 NKAAREMRDRVALLAGPVGE-------------------------------------GMP 113 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T HA I+++ + S F I D + +L+++ L + +D+ ++ Sbjct: 114 WLGTFHAISTKILRRHAELVGLKSSFTILDTDDQIRLLKQ----VLKAEDIDDKRWPARS 169 Query: 192 FYEILEISNDEDIE 205 ++ + ++ Sbjct: 170 LAYQIDAWKNRGLD 183 >gi|90021650|ref|YP_527477.1| DNA helicase/exodeoxyribonuclease V subunit A [Saccharophagus degradans 2-40] gi|89951250|gb|ABD81265.1| DNA helicase/exodeoxyribonuclease V, subunit A [Saccharophagus degradans 2-40] Length = 1155 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 13/212 (6%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 +S + A D ++S V+A AGSGKT +L RVL+LL P +L +T T+ AAAEM Sbjct: 5 DQSARDSALDISQSWVVTAPAGSGKTGLLTLRVLKLLAVVESPEEILAITFTRKAAAEML 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNK----------SDMSKARHLLITILETPG 129 R++ + L+ A+ + + ++ + +++ + +L+ Sbjct: 65 ERIVGALIEADELTRNCSPAQALEKINQIDDEHTLRFMQSAYAALARDKTQGWNLLQNTH 124 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 LK+ TI FC + Q P+ + + I DE + L E+A + + S E+ Sbjct: 125 RLKITTIDGFCRELSNQLPMLSGAGVNPQICDEP--RLLYEQAVMNLIESYKTGACEQAI 182 Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLI 221 L+ D ++ L+ D++ +R + Sbjct: 183 NQVLTHLDNDLDR-VKRLLVDLLGSREQWLPL 213 >gi|306833580|ref|ZP_07466707.1| ATP-dependent DNA helicase PcrA [Streptococcus bovis ATCC 700338] gi|304424350|gb|EFM27489.1| ATP-dependent DNA helicase PcrA [Streptococcus bovis ATCC 700338] Length = 771 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 73/198 (36%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + +D + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLNGMNDKQAEAVKTTD--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R P +D Sbjct: 59 TFTNKAAREMRER----------------------AMALNPATADTL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L ++ LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++A + + ++ ++ Sbjct: 136 ERAILGTISNAKNDLLDE 153 >gi|257468110|ref|ZP_05632206.1| ATP-dependent DNA helicase pcrA [Fusobacterium ulcerans ATCC 49185] gi|317062395|ref|ZP_07926880.1| ATP-dependent DNA helicase pcrA [Fusobacterium ulcerans ATCC 49185] gi|313688071|gb|EFS24906.1| ATP-dependent DNA helicase pcrA [Fusobacterium ulcerans ATCC 49185] Length = 725 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 39/162 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L ++ A + + A AGSGKT + R+ ++ P +L +T T A Sbjct: 4 LEKLNDRQRKAAEKIEGALLILAGAGSGKTRTITYRIAHMIQELGISPYKILAVTFTNKA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++I E V Sbjct: 64 AKEMKERVEDLIG--------------------------------------EDGKRTMVS 85 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+F +++ + ++F I D + K++++ K Sbjct: 86 TFHSFGVRLLRTYGDRLGYGANFTIYDADDQKRVVKGIMKEL 127 >gi|163849774|ref|YP_001637817.1| UvrD/REP helicase [Methylobacterium extorquens PA1] gi|163661379|gb|ABY28746.1| UvrD/REP helicase [Methylobacterium extorquens PA1] Length = 795 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 43/196 (21%) Query: 11 SETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 E +S EQ A + V A AG+GKT +L R+ L+ A P +L + Sbjct: 38 PEGASYLSGLNPEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIATGKARPYDILSV 97 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM HR+ +I Sbjct: 98 TFTNKAAREMKHRIGGLIGPAGE------------------------------------- 120 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 G + T HA I+++ + S F I + +L+++ ++ +D Sbjct: 121 GMPWLGTFHAIGTKILRRHAELVGLKSDFTILGTDDQLRLMKQ----VISDQNIDEKRWP 176 Query: 189 KKAFYEILEISNDEDI 204 ++ ++ + + Sbjct: 177 ARSLAHTIDGWKNRGL 192 >gi|328948419|ref|YP_004365756.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489] gi|328448743|gb|AEB14459.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489] Length = 675 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 58/163 (35%), Gaps = 39/163 (23%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 DL + EQ A + A AGSGKT ++ R+ +L S +L LT T Sbjct: 6 DLKDKLNPEQYKAVSTIEGPILIIAGAGSGKTRVITYRIANMLEKGIPQSQILALTFTNK 65 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ E+ L V Sbjct: 66 AAKEMEERIKELTGK--------------------------------------KLNNLTV 87 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HAF I++Q + +F+I DE K LI+E+ + Sbjct: 88 STFHAFGVRILRQEITKLGYRENFSIYDETDKKALIKESGREL 130 >gi|289450713|ref|YP_003474825.1| UvrD/REP helicase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185260|gb|ADC91685.1| UvrD/REP helicase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 849 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 57/164 (34%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 DL++ Q A + A AGSGKT ++ R+ L+ N S++L +T T Sbjct: 39 DLLAGLNEPQKKAVLHKDGPLLILAGAGSGKTKVITHRIAYLVEHENVPASSILAITFTN 98 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R++++I G+ Sbjct: 99 KAAQEMRQRIIKLIGNRVQ--------------------------------------GMW 120 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HA I++ T F +AD + K+I+ Sbjct: 121 VGTFHAMFLRILRNHAELLGFTKRFTVADTDDQLKMIKACLDEL 164 >gi|254558836|ref|YP_003065931.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens DM4] gi|254266114|emb|CAX21866.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens DM4] Length = 795 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 43/196 (21%) Query: 11 SETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 E +S EQ A + V A AG+GKT +L R+ L+ A P +L + Sbjct: 38 PEGASYLSGLNPEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIATGKARPYDILSV 97 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM HR+ +I Sbjct: 98 TFTNKAAREMKHRIGGLIGPAGE------------------------------------- 120 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 G + T HA I+++ + S F I + +L+++ ++ +D Sbjct: 121 GMPWLGTFHAIGTKILRRHAELVGLKSDFTILGTDDQLRLMKQ----VISDQNIDEKRWP 176 Query: 189 KKAFYEILEISNDEDI 204 ++ ++ + + Sbjct: 177 ARSLAHTIDGWKNRGL 192 >gi|240136984|ref|YP_002961453.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens AM1] gi|240006950|gb|ACS38176.1| DNA-dependent ATPase I and helicase II [Methylobacterium extorquens AM1] Length = 795 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 43/196 (21%) Query: 11 SETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 E +S EQ A + V A AG+GKT +L R+ L+ A P +L + Sbjct: 38 PEGASYLSGLNPEQRRAVEATEGPVLVLAGAGTGKTRVLTTRIAHLIATGKARPYDILSV 97 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM HR+ +I Sbjct: 98 TFTNKAAREMKHRIGGLIGPAGE------------------------------------- 120 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 G + T HA I+++ + S F I + +L+++ ++ +D Sbjct: 121 GMPWLGTFHAIGTKILRRHAELVGLKSDFTILGTDDQLRLMKQ----VISDQNIDEKRWP 176 Query: 189 KKAFYEILEISNDEDI 204 ++ ++ + + Sbjct: 177 ARSLAHTIDGWKNRGL 192 >gi|149177760|ref|ZP_01856360.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797] gi|148843410|gb|EDL57773.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797] Length = 755 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 40/157 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + S V A GSGKT ++ R+ L+ A+ +L +T T AA EM Sbjct: 8 TPPQFAAVSHHQGPLLVLAGPGSGKTRVITHRIASLIHAHVPAHQILGITFTNKAADEMG 67 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV ++I +++ T H F Sbjct: 68 ERVRQLIPD----------------------------------------SRVEISTFHKF 87 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I++++ + S+F+I D ++LI Sbjct: 88 CVKILRRYGRGVGLDSNFSIFDTTDQQQLIRFVLNEL 124 >gi|148257387|ref|YP_001241972.1| ATP-dependent DNA helicase Rep [Bradyrhizobium sp. BTAi1] gi|146409560|gb|ABQ38066.1| ATP-dependent DNA helicase, Rep family [Bradyrhizobium sp. BTAi1] Length = 855 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 ++ EQ A + V A AG+GKT +L R+ +L A P +L +T T Sbjct: 36 YLAGLNPEQRDAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSQGRARPGEILSVTFTNK 95 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ E++ G + Sbjct: 96 AAREMKTRLAEMLGQAVE-------------------------------------GMPWL 118 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ I++ + S+F + D + +L+++ L + +D+ + Sbjct: 119 GTFHSIAGRILRSHAELVQLKSNFTVLDVDDQIRLLKQ----LLQAENIDDKRWPARMLA 174 Query: 194 EILEISNDEDI 204 +++ + + Sbjct: 175 GLIDGWKNRGL 185 >gi|325956252|ref|YP_004286862.1| ATP-dependent helicase [Lactobacillus acidophilus 30SC] gi|325332817|gb|ADZ06725.1| ATP-dependent helicase [Lactobacillus acidophilus 30SC] gi|327183068|gb|AEA31515.1| ATP-dependent helicase [Lactobacillus amylovorus GRL 1118] Length = 748 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 40/162 (24%) Query: 17 ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 ++ +Q A + T V A AGSGKT +L +R+ L+ N P +L +T T A Sbjct: 7 LAGLNPQQKKAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R +++ + + + Sbjct: 67 ATEMREREQKLLGPAAE--------------------------------------NIWMS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA C I+++ + + +F+IAD + L++ +K Sbjct: 89 TFHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDL 130 >gi|256841725|ref|ZP_05547231.1| ATP-dependent helicase [Parabacteroides sp. D13] gi|256736619|gb|EEU49947.1| ATP-dependent helicase [Parabacteroides sp. D13] Length = 1055 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 6/206 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AG+GKTH L L LL + +L +T T A EM R+++ + + Sbjct: 7 ASAGAGKTHKLTGEYLMLLFSQPGAYRRILAVTFTNKATDEMKTRIVQELYHLAS-GRAS 65 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 ++ + +AR +L+ IL + TI F + M+ F E + Sbjct: 66 DYIQLLSSAYSLTERQVREQARKILVAILHDYSAFNISTIDRFFQQTMRAFTREIGLQGG 125 Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS-NDEDIETLISDIIS-N 214 + I E + ++ EA + LA + +++L E D +L DI+S + Sbjct: 126 YGI--EMDQELVLTEAIDNLLADLEKPESKDLLGWLLRFAEDKIEDGGGWSLRKDIMSLS 183 Query: 215 RTALKLIFFFFSYLWRRKIIEKSLWS 240 R K + FS + I +K Sbjct: 184 REVFKESYKAFSEEVGKDISDKQALD 209 >gi|313890094|ref|ZP_07823729.1| ATP-dependent DNA helicase PcrA [Streptococcus pseudoporcinus SPIN 20026] gi|313121455|gb|EFR44559.1| ATP-dependent DNA helicase PcrA [Streptococcus pseudoporcinus SPIN 20026] Length = 759 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + +D ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLDGMNDKQTEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKCINPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R P D Sbjct: 59 TFTNKAAHEMRER----------------------ALALNPATQDTL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L S+ +D+ + Sbjct: 84 ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKSLNIDSKKWS 135 Query: 189 KKAFYEILEISNDEDIET 206 +++ + + ++ ++ Sbjct: 136 ERSILATISNAKNDLLDE 153 >gi|197116744|ref|YP_002137171.1| exodeoxyribonuclease V subunit beta [Geobacter bemidjiensis Bem] gi|197086104|gb|ACH37375.1| exodeoxyribonuclease V, beta subunit [Geobacter bemidjiensis Bem] Length = 1130 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 10/161 (6%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT + LRL+L S +L +T T+AA E+ R+ + + Sbjct: 16 LIEASAGTGKTFTIAGVYLRLVLEQKFDVSRILVVTFTEAATKELKERIRNKLKE-AENG 74 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + + I+G + D S+AR LL + + + + TIH FC+ ++Q P E+ Sbjct: 75 FLTGATDDFLIEGLLKSTQDHSEARRLLSSAIRSFDEAAIFTIHGFCQRMLQDNPFESG- 133 Query: 154 TSHFAIADEE---QSKKLIEEAKKSTLASIMLDNNEELKKA 191 ++ D E K++ E + EE A Sbjct: 134 ----SLCDTELVTDQGKILMEIAQDYWRINCYGQPEERIAA 170 >gi|227893040|ref|ZP_04010845.1| ATP-dependent DNA helicase PcrA [Lactobacillus ultunensis DSM 16047] gi|227865153|gb|EEJ72574.1| ATP-dependent DNA helicase PcrA [Lactobacillus ultunensis DSM 16047] Length = 748 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 60/168 (35%), Gaps = 39/168 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 SE L S ++ V A AGSGKT +L +R+ L+ N P +L + Sbjct: 1 MSENSILASLNPQQKKAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENHVAPWNILAI 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R ++ + Sbjct: 61 TFTNKAATEMRDREQGLLGPAAE------------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T HA C I+++ + + +F+IAD + L++ +K Sbjct: 84 -NIWMSTFHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDL 130 >gi|254570639|ref|XP_002492429.1| DNA helicase and DNA-dependent ATPase [Pichia pastoris GS115] gi|238032227|emb|CAY70223.1| DNA helicase and DNA-dependent ATPase [Pichia pastoris GS115] gi|328353556|emb|CCA39954.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Pichia pastoris CBS 7435] Length = 802 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 34/157 (21%) Query: 16 LISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +++ S+Q A +D + + A G+GKT +L RV LL+ + PS ++ T TK Sbjct: 1 MLASLNSQQYEAVTADIHKPLQIIAGPGTGKTKVLTSRVAYLLIEHKIPPSNIIVTTFTK 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ + + D+ L GL Sbjct: 61 KAANEMVERLQVLFAKENLDPDKYLK-------------------------------GLL 89 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + T H+ C +++++ + +T F IADE S ++ Sbjct: 90 IGTFHSICVKLLRRYGTQIGLTPKFKIADERDSNTIL 126 >gi|254426856|ref|ZP_05040563.1| exodeoxyribonuclease V, beta subunit [Alcanivorax sp. DG881] gi|196193025|gb|EDX87984.1| exodeoxyribonuclease V, beta subunit [Alcanivorax sp. DG881] Length = 1198 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 77/189 (40%), Gaps = 19/189 (10%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT L LRL+L + P +L +T T+AA E+ R+ + Sbjct: 18 LIEASAGTGKTFTLAALYLRLVLGHGDENGFSRPLLPPEILVVTFTEAATEELRERIRDR 77 Query: 86 ITA----WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + ++ + E + ++ D ++ L + + TIH FC Sbjct: 78 LADAARIFADSNAEADDPVLAELLNDYSAPDDRARCAQRLEAAAQWMDEAAIYTIHGFCN 137 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 +++Q ++ S F++ +E + + A + +I+ + + L+ N Sbjct: 138 RMLKQHAFDSG--SLFSLELQEDASDEQQMAARDYWRTII----SKFPVSAANALQSDNL 191 Query: 202 EDIETLISD 210 + + L+ Sbjct: 192 GNPDALLEA 200 >gi|258510684|ref|YP_003184118.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477410|gb|ACV57729.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 756 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 78/235 (33%), Gaps = 50/235 (21%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 S+ + +++ + E + A+D V A AGSGKT +L +R+ L+ P +L + Sbjct: 7 ASDILKGLNEKQREAVTATD--GPVLVIAGAGSGKTSVLTRRIAYLIAERRVPPWAILAI 64 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R+ ++ + Sbjct: 65 TFTNKAAREMEERIERLVGPVA-------------------------------------- 86 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T HA C I+++ TS F + D L + + + +D + Sbjct: 87 SDIWTSTFHAMCARILRRDIHHLGYTSAFTVLDAADQVSL----VRRLMQEMNIDVRKFE 142 Query: 189 KKAFYEILEISNDE--DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +A + +E E + S + + + R++ E Sbjct: 143 PRAVLHAISQHKNELRSAEKALDLAGSPYDKMVGDVYL---AYERRLRENQALDF 194 >gi|206896426|ref|YP_002246429.1| ATP-dependent DNA helicase PcrA [Coprothermobacter proteolyticus DSM 5265] gi|206739043|gb|ACI18121.1| ATP-dependent DNA helicase PcrA [Coprothermobacter proteolyticus DSM 5265] Length = 696 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 44/173 (25%) Query: 7 FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTL 65 + E +++DL ++++ + P + + A GSGKT +L R L + + P + Sbjct: 32 YNEDVDSVDLSKLNEAQKQAVTAPPKPLAIIAGPGSGKTRVLTYRALFAVKEWHLPPERI 91 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T AA E+ R+ +I Sbjct: 92 LAITFTNKAADELKERLGRLI--------------------------------------- 112 Query: 126 ETPGGLKVQ--TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 P G ++ T+H+F +++ F A I+ +F I D++ SK LIE+ K Sbjct: 113 --PEGDRIFAATMHSFAARMLRYFAPYAGISQNFVIYDDDDSKGLIEDILKQM 163 >gi|146342459|ref|YP_001207507.1| DNA helicase II [Bradyrhizobium sp. ORS278] gi|146195265|emb|CAL79290.1| DNA helicase II [Bradyrhizobium sp. ORS278] Length = 865 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 ++ EQ A + V A AG+GKT +L R+ +L A P +L +T T Sbjct: 36 YLAGLNPEQRDAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSMGRARPGEILSVTFTNK 95 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ E++ G + Sbjct: 96 AAREMKTRLAEMLGQAVE-------------------------------------GMPWL 118 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ I++ + S+F + D + +L+++ L + +D+ + Sbjct: 119 GTFHSIAGRILRSHAELVQLKSNFTVLDVDDQIRLLKQ----LLQAENIDDKRWPARMLA 174 Query: 194 EILEISNDEDI 204 +++ + + Sbjct: 175 NLIDGWKNRGL 185 >gi|329770497|ref|ZP_08261875.1| hypothetical protein HMPREF0433_01639 [Gemella sanguinis M325] gi|328836246|gb|EGF85915.1| hypothetical protein HMPREF0433_01639 [Gemella sanguinis M325] Length = 728 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++L+ QL A + V A AGSGKT +L R+ L+ N S +L +T T Sbjct: 1 MNLVQNMNENQLKAILKTEGAVMVIAGAGSGKTRVLTNRIAYLISEKNVLESNILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ ET + Sbjct: 61 NKAAKEMKERIYSLVG--------------------------------------ETSKYI 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I++Q +F I D + K +I+ K Sbjct: 83 WINTFHSMCVRILRQNIELLGYNKNFTILDVSEQKSIIKNILKEL 127 >gi|171464032|ref|YP_001798145.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193570|gb|ACB44531.1| UvrD/REP helicase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 788 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 67/198 (33%), Gaps = 51/198 (25%) Query: 15 DLISQTKSEQLLASD--------PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 DL++ EQ A ++SA + A AG GKT +L R+ L+ P + Sbjct: 4 DLLANLNPEQREAVTLPPVNENGQSQSALILAGAGGGKTRVLTTRIAWLIQTGQVSPIGV 63 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T AA EM R+ ++ Sbjct: 64 LAVTFTNKAAKEMMLRLSAMLPI------------------------------------- 86 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 G+ + T H C +++ EA + S F I D + A K L + +D+ Sbjct: 87 -NTRGMWIGTFHGLCNRLLRAHHKEAGLPSTFQILDTQDQLS----AIKRLLKGLKVDDE 141 Query: 186 EELKKAFYEILEISNDED 203 + K + + + Sbjct: 142 KYPAKQLQYFIAHAKERG 159 >gi|302023661|ref|ZP_07248872.1| ATP-dependent DNA helicase [Streptococcus suis 05HAS68] gi|330832685|ref|YP_004401510.1| superfamily I DNA/RNA helicase [Streptococcus suis ST3] gi|329306908|gb|AEB81324.1| superfamily I DNA/RNA helicase [Streptococcus suis ST3] Length = 759 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 76/211 (36%), Gaps = 51/211 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYALNPATQACL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L ++ LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRSLM----KRILKNLNLDPKKWS 135 Query: 189 KKAFYEIL-----EISNDEDIETLISDIISN 214 +++ + ++ +D+ E D+ + Sbjct: 136 ERSILGTISNAKNDLIDDKAFEAQAGDLYTQ 166 >gi|315037777|ref|YP_004031345.1| ATP-dependent helicase [Lactobacillus amylovorus GRL 1112] gi|312275910|gb|ADQ58550.1| ATP-dependent helicase [Lactobacillus amylovorus GRL 1112] Length = 748 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 40/162 (24%) Query: 17 ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 ++ +Q A + T V A AGSGKT +L +R+ L+ N P +L +T T A Sbjct: 7 LAGLNPQQKKAVETTEGPLLVVAGAGSGKTSVLTRRIAYLVEENQVAPWNILAITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R +++ + + + Sbjct: 67 ATEMREREQKLLGPAAE--------------------------------------NIWMS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA C I+++ + + +F+IAD + L++ +K Sbjct: 89 TFHALCVRILRRDADKIGYSHNFSIADSAEQLTLVKHIEKDL 130 >gi|296132369|ref|YP_003639616.1| ATP-dependent DNA helicase PcrA [Thermincola sp. JR] gi|296030947|gb|ADG81715.1| ATP-dependent DNA helicase PcrA [Thermincola potens JR] Length = 741 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 62/185 (33%), Gaps = 43/185 (23%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76 + ++ + A AGSGKT +L R+ L+ P +L +T T AA Sbjct: 5 NLNPEQKEAVEWTEGPLLILAGAGSGKTRVLTYRIAHLIHRKGVSPRNILAITFTNKAAQ 64 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV + S L V T Sbjct: 65 EMKERVERFLGYDSR--------------------------------------DLWVCTF 86 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+ C I++ + +F I D + L+ K+ L + +D+ + +A ++ Sbjct: 87 HSACVRILRMEIEKLGYGRNFVIYDSADQQTLL----KNCLKELNIDDKKYPPRAMQVLI 142 Query: 197 EISND 201 + + Sbjct: 143 SQAKN 147 >gi|323351871|ref|ZP_08087522.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis VMC66] gi|322121928|gb|EFX93660.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis VMC66] Length = 762 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 73/195 (37%), Gaps = 46/195 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ ++ ++E + ++ + A AGSGKT +L+ R+ L+ +P +L +T T Sbjct: 4 LLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLIHRIAYLIDEKMVNPWNILAITFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R A L + Sbjct: 62 NKAAREMRER-----------------------------------AEKLKTEAQDCL--- 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C I+++ +F I D + + L+ K L ++ LD + ++A Sbjct: 84 -IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERA 138 Query: 192 FYEILEISNDEDIET 206 + + ++ I+ Sbjct: 139 ILGTISNAKNDLIDE 153 >gi|260662791|ref|ZP_05863685.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum 28-3-CHN] gi|260552872|gb|EEX25871.1| ATP-dependent DNA helicase PcrA [Lactobacillus fermentum 28-3-CHN] Length = 756 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 41/168 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 ++ ++ ++ +SE +L ++ V A AGSGKT +L R+ L+ + P +L Sbjct: 2 QNQSMLEGMNDKQSEAVLTTE--GPLLVMAGAGSGKTRVLTHRIAYLIEERHVLPWHILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV +++ E Sbjct: 60 ITFTNKAAREMKERVAKLLG--------------------------------------EA 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + V T HA C I+++ + F IAD + + LI+ + Sbjct: 82 GNDVWVSTFHAMCVRILRRDIEQLGYNRAFTIADTSEQRTLIKRICEE 129 >gi|305667011|ref|YP_003863298.1| putative helicase [Maribacter sp. HTCC2170] gi|88709246|gb|EAR01480.1| putative helicase [Maribacter sp. HTCC2170] Length = 787 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 58/172 (33%), Gaps = 38/172 (22%) Query: 6 SFQEHSETIDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64 + Q+ + + + Q V A AGSGKT +L R+ L+ Sbjct: 5 TVQKIIVLKNFLDELNDAQKAPVLHKDGPLMVIAGAGSGKTRVLTYRIAHLMAQGVDSFN 64 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L LT T AA EM R+ EI+ + + Sbjct: 65 ILALTFTNKAAREMKKRIAEIVGSSEAKN------------------------------- 93 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L + T H+ +++ + S+F I D + S++LI K Sbjct: 94 ------LWMGTFHSVFAKLLRFDGDKLGYPSNFTIYDTQDSQRLIASIIKEM 139 >gi|2618592|dbj|BAA23380.1| UvrD [Thermus thermophilus] Length = 692 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 56/163 (34%), Gaps = 41/163 (25%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 L++ Q A A V A AGSGKT +V RV L+ PS +L +T T Sbjct: 5 LLAPLNEAQRQAVLHFEGPALVVAGAGSGKTRTVVHRVAYLVARRGVFPSEILAVTFTNK 64 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ G + V Sbjct: 65 AAEEMRERLRGLVPGA---------------------------------------GEVWV 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA I++ + + F + DE+ L++E K Sbjct: 86 STFHAAALRILRVYGERVGLRPGFVVYDEDDQTALLKEVLKEL 128 >gi|304314662|ref|YP_003849809.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str. Marburg] gi|302588121|gb|ADL58496.1| ATP-dependent DNA helicase [Methanothermobacter marburgensis str. Marburg] Length = 918 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 50/240 (20%), Positives = 89/240 (37%), Gaps = 57/240 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 I T ++ T V A G+GKT I+V+RV +L+ P +L+ +T TK AA Sbjct: 5 IQLTDEQRRAVEHFTGPMLVVAGPGAGKTRIIVERVAQLIEERGVDPGSLVVITFTKKAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ R+L + + + +++ T Sbjct: 65 DELKERILGRVGSRAE--------------------------------------EMQIST 86 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST------------LASIMLD 183 IH+FC I++ +P + SHF + DEE+ I + ++ L + + Sbjct: 87 IHSFCNRILRTYPDHHPLGSHFHVLDEEKQLMFIYDHREELGLAHTPRERFVKLQAFFSE 146 Query: 184 NNEEL--KKAFYEILEISNDEDIETLISDIISNRTAL---KLIFFFFSYLWR-RKIIEKS 237 E + +A E + IE + + L K + F W+ K++E Sbjct: 147 CQENMIEPEALLEYHRSHGSKRIEIVAAKAYGKYLKLMEEKRVLDFSGMQWQVVKLLESD 206 >gi|227498671|ref|ZP_03928815.1| ATP-dependent DNA helicase pcrA [Acidaminococcus sp. D21] gi|226904127|gb|EEH90045.1| ATP-dependent DNA helicase pcrA [Acidaminococcus sp. D21] Length = 750 Score = 121 bits (305), Expect = 7e-26, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 42/166 (25%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 DL+S ++Q A + A AGSGKT L R+ LL P ++L +T T Sbjct: 3 DLLSSLNTQQAEAVKHVAGPILILAGAGSGKTKALTTRIAYLLEKGVPPYSILAITFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ + + + Sbjct: 63 AAKEMRERVDKLVGPLAK--------------------------------------DVWL 84 Query: 134 QTIHAFCEAIMQQFPLEA---NITSHFAIADEEQSKKLIEEAKKST 176 T H FC ++++ + F+I D K +++ K Sbjct: 85 YTFHGFCNQLLRREIKHLSHYGYGTGFSIYDTTDCKNVLKGILKDL 130 >gi|86749818|ref|YP_486314.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2] gi|86572846|gb|ABD07403.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2] Length = 686 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 58/168 (34%), Gaps = 38/168 (22%) Query: 16 LISQTKSEQLLASDPT------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 + EQ A + V A AGSGKT+ L RV L++ A P +L +T Sbjct: 7 YLDGLNPEQRCAVEHGVGQSSCPPLLVIAGAGSGKTNTLAHRVAHLVVNGADPHRILLMT 66 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 ++ AAAEM+ RV I AR ++ G Sbjct: 67 FSRRAAAEMTRRVERI-------------------------------ARRVMGDGAARGG 95 Query: 130 GL-KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L T H ++++ + F I D E S L+ + Sbjct: 96 ALSWAGTFHGIGARLLREHAERIGLDPAFTIHDREDSADLMNLVRHDL 143 >gi|254362549|ref|ZP_04978650.1| exodeoxyribonuclease V [Mannheimia haemolytica PHL213] gi|153094150|gb|EDN75046.1| exodeoxyribonuclease V [Mannheimia haemolytica PHL213] Length = 1174 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 17/179 (9%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHP---STLLCLTHTKAAAAEMSHRVLEII 86 +S + A+AG+GKT + LRLLL +P +L +T TKAA E+ +R+ + I Sbjct: 12 NKSVLIEASAGTGKTFTIANLYLRLLLGIGCNPLTVEQILVVTFTKAATEELKNRIRKNI 71 Query: 87 TAWSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV----------QT 135 + L D+ E+ + + N +++ L+ I E L + T Sbjct: 72 QQCADFLKDQADGLEVESTKSYRNNLDFLAQIYPLIPNIHEALLRLSIAEREIDTASVFT 131 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 IH FC+ ++ QF E+ + F + + L+++ + + + A E Sbjct: 132 IHGFCQKMLVQFAFESGV--RFDLDLQPNQSDLLKKLSEEVWREQFYPQDLAITYAVAE 188 >gi|315656421|ref|ZP_07909310.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492980|gb|EFU82582.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 877 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 41/165 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 + +D ++ + + + V A AGSGKT +L +R+ LL P +L +T Sbjct: 59 AAIVDGLN--PEQHAAVTHESGPLLVMAGAGSGKTRVLTRRIAWLLATERIRPWEVLAIT 116 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM RV ++ + Sbjct: 117 FTNKAAAEMRQRVESLVGNAAKY------------------------------------- 139 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + V T H+ C I++ +T F+I D +K L+ K Sbjct: 140 -MWVSTFHSACVRILRAEADTLGVTRSFSIYDTADTKALLNRIIK 183 >gi|312278340|gb|ADQ62997.1| ATP-dependent DNA helicase PcrA [Streptococcus thermophilus ND03] Length = 770 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 49/198 (24%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L++ +Q A + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 4 LLTGMNDQQAEAVQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAITFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R + + A S + Sbjct: 64 AAREMRERAVALNPATSETL---------------------------------------I 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ C I+++ +F I D + + L+ K L ++ LD + ++A Sbjct: 85 ATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERAIL 140 Query: 194 EILEISNDEDIETLISDI 211 + + ++ L+ +I Sbjct: 141 GTISNAKND----LLDEI 154 >gi|313673050|ref|YP_004051161.1| ATP-dependent DNA helicase pcra [Calditerrivibrio nitroreducens DSM 19672] gi|312939806|gb|ADR18998.1| ATP-dependent DNA helicase PcrA [Calditerrivibrio nitroreducens DSM 19672] Length = 677 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 41/161 (25%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 D ++ T+ + +L +D V A AG+GKT ++ ++ LL P +L +T T Sbjct: 7 DDLNSTQKDAILYND--GPLLVIAGAGTGKTRVITYKIAYLLKEMGIPPENILAVTFTNK 64 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV+ ++ G+ + Sbjct: 65 AADEMLKRVVHLVGKSGK--------------------------------------GIWI 86 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 T H+ ++++ + S+F++ D++ +I E K Sbjct: 87 GTFHSVALRMLRRDGHLLGLPSNFSVIDQDDRIAVIREILK 127 >gi|297566348|ref|YP_003685320.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946] gi|296850797|gb|ADH63812.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946] Length = 726 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 +++Q A V A AGSGKT +V R+ LL + + +L +T T AA EM Sbjct: 16 NEAQQAAVKHFEGPALVVAGAGSGKTRTVVHRIAYLLREHRVYAGEILAVTFTNKAAGEM 75 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +++ +H L V T H+ Sbjct: 76 KERLGKMVGRAAH--------------------------------------DLWVSTFHS 97 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 I++ + + F + D++ L++E K Sbjct: 98 AALRILRVYGEWVGLKPGFVVYDDDDQNTLLKEILKDL 135 >gi|255015776|ref|ZP_05287902.1| ATP-dependent helicase [Bacteroides sp. 2_1_7] gi|298377090|ref|ZP_06987044.1| UvrD/REP helicase domain protein [Bacteroides sp. 3_1_19] gi|298266074|gb|EFI07733.1| UvrD/REP helicase domain protein [Bacteroides sp. 3_1_19] Length = 1055 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 6/206 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AG+GKTH L L LL + +L +T T A EM R+++ + + Sbjct: 7 ASAGAGKTHKLTGEYLMLLFSQPGAYRRILAVTFTNKATDEMKTRIVQELYHLAS-GRAS 65 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 ++ + +AR +L+ IL + TI F + M+ F E + Sbjct: 66 DYIQLLSSAYSLTERQVREQARKILVAILHDYSAFNISTIDRFFQQTMRAFTREIGLQGG 125 Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS-NDEDIETLISDIIS-N 214 + I E + ++ EA + LA + +++L E D +L DI+S + Sbjct: 126 YGI--EMDQELVLTEAIDNLLADLEKPESKDLLGWLLRFAENKIEDGGGWSLRQDIMSLS 183 Query: 215 RTALKLIFFFFSYLWRRKIIEKSLWS 240 R K + FS + I +K Sbjct: 184 REVFKESYKAFSEEVGKDIADKQALD 209 >gi|262198052|ref|YP_003269261.1| exodeoxyribonuclease V [Haliangium ochraceum DSM 14365] gi|262081399|gb|ACY17368.1| Exodeoxyribonuclease V [Haliangium ochraceum DSM 14365] Length = 1284 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 13/188 (6%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHR 81 L A DP R V A+AG+GKT+++ RV+ LLL+ P +L +T T+ A AE+ R Sbjct: 36 RALAALDPERHQVVEASAGTGKTYLIEHRVVDLLLSTDTPIEQILVVTFTEKATAELRFR 95 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V +I + +A P+ ++AR L + + TIHAFC+ Sbjct: 96 VRRLIENVA-------AARQHTAAEDAPHWRIDAEARRKLTDAMLGFDRAAIHTIHAFCQ 148 Query: 142 AIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 ++ + + + + +A E + A + LA D+++ A+Y + Sbjct: 149 RVLTENAFSSRRLFAQTQVAGEAAFGDAFKAALREELAR--EDDHKRYLAAWYRSGRSVD 206 Query: 201 DEDIETLI 208 D +E L+ Sbjct: 207 D--LEKLL 212 >gi|319638964|ref|ZP_07993722.1| DNA helicase II [Neisseria mucosa C102] gi|317399868|gb|EFV80531.1| DNA helicase II [Neisseria mucosa C102] Length = 735 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 60/164 (36%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +L+ +EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T Sbjct: 9 NLLQGLNTEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQSGQASVHSIMAVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + F I D LI+ K+ Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPLSFQILDSGDQLSLIKRLLKNL 134 >gi|258545647|ref|ZP_05705881.1| ATP-dependent helicase PcrA [Cardiobacterium hominis ATCC 15826] gi|258519114|gb|EEV87973.1| ATP-dependent helicase PcrA [Cardiobacterium hominis ATCC 15826] Length = 723 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 64/168 (38%), Gaps = 41/168 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE + +++ + E + P R+ V A AGSGKT +LVQR+ L+ + P LL Sbjct: 2 DVSEILQGLNERQRE--AVTHPARAMRVIAGAGSGKTRVLVQRMQWLMAVEGVSPYGLLA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T AA EM R+ + Sbjct: 60 LTFTNKAAREMRQRLEAALQRP-------------------------------------- 81 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G L + T H C I+++ L F I D + +L++ ++ Sbjct: 82 LGQLWMGTFHGICHRILRRHALLMQWPEQFVIMDSDDQLRLVKRMMRA 129 >gi|261495059|ref|ZP_05991526.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309301|gb|EEY10537.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str. OVINE] Length = 1174 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 17/179 (9%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHP---STLLCLTHTKAAAAEMSHRVLEII 86 +S + A+AG+GKT + LRLLL +P +L +T TKAA E+ +R+ + I Sbjct: 12 NKSVLIEASAGTGKTFTIANLYLRLLLGIGCNPLTVEQILVVTFTKAATEELKNRIRKNI 71 Query: 87 TAWSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV----------QT 135 + L D+ E+ + + N +++ L+ I E L + T Sbjct: 72 QQCADFLKDQADGLEVESTKSYRNNLDFLAQIYPLIPNIHEALLRLSIAEREIDTASVFT 131 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 IH FC+ ++ QF E+ + F + + L+++ + + + A E Sbjct: 132 IHGFCQKMLVQFAFESGV--RFDLDLQPNQSDLLKKLSEEVWREQFYPQDLAITYAVAE 188 >gi|323342977|ref|ZP_08083208.1| ATP-dependent DNA helicase PcrA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463041|gb|EFY08236.1| ATP-dependent DNA helicase PcrA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 715 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 52/195 (26%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D I EQ A + V A AGSGKT +L R++ L+ +PS + +T T Sbjct: 1 MDYIQGLNKEQKEAVLTKAKHVRVIAGAGSGKTRVLTTRIVHLIADLGYYPSKICAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ P + Sbjct: 61 NKAANEMKERMEAML-----------------------------------------PDAI 79 Query: 132 KV--QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 +V TIH+ C I+++ N+ +F I D + ++ EA K + + Sbjct: 80 RVHTSTIHSLCVRIIREEYEALNLVRNFTILDTSDQQAVMREAYKQF-------DYDRKD 132 Query: 190 KAFYEILEISNDEDI 204 +F E L ++ Sbjct: 133 ISFREALTYISNNKF 147 >gi|227432451|ref|ZP_03914438.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351772|gb|EEJ42011.1| ATP-dependent DNA helicase PcrA [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 749 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 72/191 (37%), Gaps = 45/191 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 I ++ +SE + ++ + A AGSGKT +L R+ L+ N +P +L +T T Sbjct: 6 LIQGMNDKQSEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAHLVQDKNVYPWRILAITFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +++ D AR + Sbjct: 64 NKAAREMRERIAQLV--------------------------DPEIARE-----------I 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKK 190 V T HA I+++ + +F I D + L+ K + + LD N+ + + Sbjct: 87 WVSTFHAMAVRILRRDGERIGLARNFTIIDTSAQRTLM----KRVINDLNLDTNQYDPRT 142 Query: 191 AFYEILEISND 201 + ND Sbjct: 143 ILGTVSNAKND 153 >gi|304390802|ref|ZP_07372754.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325685|gb|EFL92931.1| ATP-dependent DNA helicase PcrA [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 877 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 41/165 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 + +D ++ + + + V A AGSGKT +L +R+ LL P +L +T Sbjct: 59 AAIVDGLN--PEQHAAVTHESGPLLVMAGAGSGKTRVLTRRIAWLLATERIRPWEVLAIT 116 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM RV ++ + Sbjct: 117 FTNKAAAEMRQRVESLVGNAAKY------------------------------------- 139 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + V T H+ C I++ +T F+I D +K L+ K Sbjct: 140 -MWVSTFHSACVRILRAEADTLGVTRSFSIYDTADTKALLNRIIK 183 >gi|283953895|ref|ZP_06371425.1| LOW QUALITY PROTEIN: ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni 414] gi|283794674|gb|EFC33413.1| LOW QUALITY PROTEIN: ATP-dependent DNA helicase, UvrD/REP family [Campylobacter jejuni subsp. jejuni 414] Length = 392 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 3/129 (2%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + ++AGSGKT L R + L+L A + +L LT TK AA EM R++E + Sbjct: 8 LALESSAGSGKTFALSVRFVALILKGAKINEILALTFTKKAANEMQKRIVETFLNLEKEN 67 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 E+ K+ K K +S L T LK+ T AF I++ F L + Sbjct: 68 KTSECNELCKLLDKSK-KELISLRDTKKEEFLRT--ELKISTFDAFFGKILRVFALNLGL 124 Query: 154 TSHFAIADE 162 +S F +++E Sbjct: 125 SSDFTMSEE 133 >gi|255994849|ref|ZP_05427984.1| ATP-dependent DNA helicase PcrA [Eubacterium saphenum ATCC 49989] gi|255993562|gb|EEU03651.1| ATP-dependent DNA helicase PcrA [Eubacterium saphenum ATCC 49989] Length = 753 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 63/176 (35%), Gaps = 38/176 (21%) Query: 1 MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-N 59 M+ E SE + ++ + + A V A AGSGKT ++ R+ L+L N Sbjct: 1 MLEKPKINEESEILKSLNDMQKQ--GAVTTEGPLLVLAGAGSGKTKMMTHRMAYLILEKN 58 Query: 60 AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119 P +L +T T AA EM R A Sbjct: 59 VDPQNILAVTFTNKAANEMKQR-----------------------------------AEF 83 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 L+ + + GL ++T HA C AI++ +F I K ++ A K Sbjct: 84 LIHSRGRSLKGLWIKTFHATCLAILKNHAGALGYGENFLIYTASDQKAAVKRAIKE 139 >gi|225848053|ref|YP_002728216.1| ATP-dependent DNA helicase PcrA [Sulfurihydrogenibium azorense Az-Fu1] gi|225644159|gb|ACN99209.1| ATP-dependent DNA helicase PcrA [Sulfurihydrogenibium azorense Az-Fu1] Length = 700 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 74/198 (37%), Gaps = 43/198 (21%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D ++ + E +L V A AGSGKT ++ +++ L+ + +L +T T Sbjct: 6 ILDGLNDRQKEAVL--HFESPLLVLAGAGSGKTKVITHKIMYLVKSLGIPIHRILAITFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV + + Sbjct: 64 NKAAEEMKERVEKALGERPQ---------------------------------------- 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H+F ++ + +F I DE+ SKKLI++ K + L +++K Sbjct: 84 WVMTFHSFAAKFLRFEAEKVGYDRNFVIYDEDDSKKLIKKVLKDLNLNEELIKPDKVKDY 143 Query: 192 FYEILEISNDEDIETLIS 209 +I + N E+ L+S Sbjct: 144 ISKIKQEDNPEEYLDLLS 161 >gi|116627783|ref|YP_820402.1| superfamily I DNA/RNA helicase [Streptococcus thermophilus LMD-9] gi|116101060|gb|ABJ66206.1| ATP-dependent DNA helicase PcrA [Streptococcus thermophilus LMD-9] Length = 770 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 49/198 (24%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L++ +Q A + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 4 LLTGMNDQQAEAVQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAITFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R + + A S + Sbjct: 64 AAREMRERAVALNPATSETL---------------------------------------I 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ C I+++ +F I D + + L+ K L ++ LD + ++A Sbjct: 85 ATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERAIL 140 Query: 194 EILEISNDEDIETLISDI 211 + + ++ L+ +I Sbjct: 141 GTISNAKND----LLDEI 154 >gi|56962858|ref|YP_174585.1| ATP-dependent DNA helicase UvrD [Bacillus clausii KSM-K16] gi|56909097|dbj|BAD63624.1| UvrD/REP family ATP-dependent DNA helicase [Bacillus clausii KSM-K16] Length = 751 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 43/184 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 +Q + + A AGSGKT +L R+ LL + P +L LT T AA EM Sbjct: 17 NPEQQKAVTHSNGPLLLMAGAGSGKTRVLTYRISYLLRRHSTPPWAVLALTFTNKAAREM 76 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + + + T H+ Sbjct: 77 KDRVAQLVGPIAE--------------------------------------DIWISTFHS 98 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++++ + +F I D +I++ L S +D + KA ++ Sbjct: 99 MCVRMLRRDIDRIGYSRNFTILDSSDQLSVIKQ----ILKSQNVDPKKFDPKAILGMISA 154 Query: 199 SNDE 202 + +E Sbjct: 155 AKNE 158 >gi|229003980|ref|ZP_04161785.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock1-4] gi|228757256|gb|EEM06496.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock1-4] Length = 1182 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 32/175 (18%) Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122 LL +T T AAA EM +R+ E + K+ +P + K LL Sbjct: 2 DRLLVVTFTNAAAQEMKNRIGEAL---------------EKVLIDEPGSGHVRKQLSLL- 45 Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM- 181 + TIH+FC +++ + ++ F IA++ +++ L EE L Sbjct: 46 ------NKASISTIHSFCLQVIRTYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYG 99 Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ N+ + +D D++ +I L L ++ K ++K Sbjct: 100 IEGNDIFFELVDRYTSDRSDNDLQRMI---------LALHTESRAHPDPEKWLDK 145 >gi|299069674|emb|CBJ40950.1| putative atp-dependent dna helicase II protein (uvrD) [Ralstonia solanacearum CMR15] Length = 710 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 64/177 (36%), Gaps = 31/177 (17%) Query: 9 EHSETIDLISQTKSEQLLASD---------PTRSAWVSANAGSGKTHILVQRVLRLLLAN 59 E + D ++Q +Q LA + T V A AGSGKTH L RV L+ Sbjct: 9 ETAPAPDYLAQLNDQQRLAVEFGISGPDAAQTGPLLVLAGAGSGKTHTLGWRVAHLVANG 68 Query: 60 AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119 A P +L LT ++ AA+E+S R ++ S SA T + P Sbjct: 69 ADPQRILLLTFSRRAASELSSRAGHLLARALQGSAGARSAAGTAYRTALP---------- 118 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++++ + F I D + L+ + Sbjct: 119 ------------WAGTFHGIGARLLREYAERIGLAPDFTIHDRSDAADLLNVVRHEL 163 >gi|315652267|ref|ZP_07905259.1| ATP-dependent helicase PcrA [Eubacterium saburreum DSM 3986] gi|315485390|gb|EFU75780.1| ATP-dependent helicase PcrA [Eubacterium saburreum DSM 3986] Length = 733 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 41/167 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68 S D ++ + + + A AGSGKT +L+ R+ L+ + P ++ + Sbjct: 1 MSTIYDKLNDKQKQ--AVFTTEGPLLLLAGAGSGKTGVLMHRIAYLINEKHIDPYNIMAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R+ +I + Sbjct: 59 TFTNKAAKEMKERITNLIGGDGNF------------------------------------ 82 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + V T H+ C +++F + ++F I D + + L+++ K Sbjct: 83 --VWVMTFHSSCVRFLRRFIDKIGFDNNFTIYDSDDQRTLMKKIFKE 127 >gi|261493834|ref|ZP_05990348.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310537|gb|EEY11726.1| exodeoxyribonuclease V [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 1174 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 17/179 (9%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHP---STLLCLTHTKAAAAEMSHRVLEII 86 +S + A+AG+GKT + LRLLL +P +L +T TKAA E+ +R+ + I Sbjct: 12 NKSVLIEASAGTGKTFTIANLYLRLLLGIGCNPLTVEQILVVTFTKAATEELKNRIRKNI 71 Query: 87 TAWSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV----------QT 135 + L D+ E+ + + N +++ L+ I E L + T Sbjct: 72 QQCADFLKDQADGLEVESTKSYRNNLDFLAQIYPLIPNIHEALLRLSIAEREIDTASVFT 131 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 IH FC+ ++ QF E+ + F + + L+++ + + + A E Sbjct: 132 IHGFCQKMLVQFAFESGV--RFDLDLQPNQSDLLKKLSEEVWREQFYPQDLAITYAVAE 188 >gi|55822939|ref|YP_141380.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066] gi|55738924|gb|AAV62565.1| ATP-dependent DNA helicase [Streptococcus thermophilus CNRZ1066] Length = 775 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 49/198 (24%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L++ +Q A + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 10 LLTGMNDQQAEAVQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAITFTNK 69 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R + + A S + Sbjct: 70 AAREMRERAVALNPATSETL---------------------------------------I 90 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ C I+++ +F I D + + L+ K L ++ LD + ++A Sbjct: 91 ATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERAIL 146 Query: 194 EILEISNDEDIETLISDI 211 + + ++ L+ +I Sbjct: 147 GTISNAKND----LLDEI 160 >gi|17549495|ref|NP_522835.1| ATP-dependent DNA helicase II protein [Ralstonia solanacearum GMI1000] gi|17431748|emb|CAD18427.1| probable atp-dependent dna helicase II protein [Ralstonia solanacearum GMI1000] Length = 710 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 64/177 (36%), Gaps = 31/177 (17%) Query: 9 EHSETIDLISQTKSEQLLASD---------PTRSAWVSANAGSGKTHILVQRVLRLLLAN 59 E + D ++Q +Q LA + T V A AGSGKTH L RV L+ Sbjct: 9 ETAPAPDYLAQLNDQQRLAVEFGISGADAAQTGPLLVLAGAGSGKTHTLGWRVAHLVANG 68 Query: 60 AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119 A P +L LT ++ AA+E+S R ++ S SA T + P Sbjct: 69 ADPQRILLLTFSRRAASELSSRAGHLLARALQGSAGARSAAGTAYRTALP---------- 118 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++++ + F I D + L+ + Sbjct: 119 ------------WAGTFHGIGARLLREYAERIGLAPDFTIHDRSDAADLLNVVRHEL 163 >gi|195941740|ref|ZP_03087122.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Borrelia burgdorferi 80a] Length = 659 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S + + + + + A AGSGKT ++ R+ LLL +L LT T AA E Sbjct: 10 SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ +I+ + L V T H Sbjct: 70 MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180 AF +++ +F+I D+ L++E L+++ Sbjct: 92 AFGLYFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 151 Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219 + + + + + + E L + N D + LI +++SN + ++ Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNDSDIR 200 >gi|169824265|ref|YP_001691876.1| ATP-dependent DNA helicase [Finegoldia magna ATCC 29328] gi|167831070|dbj|BAG07986.1| ATP-dependent DNA helicase [Finegoldia magna ATCC 29328] Length = 725 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 62/198 (31%), Gaps = 42/198 (21%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++L + ++ + + A AGSGKT +L ++ L +L +T T Sbjct: 1 MMNLDNLNDRQREAVENTDGPMLILAGAGSGKTKVLTTKIAYCLEKGLCSKYEILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV I+ E + Sbjct: 61 NKAAKEMKERVENILQ--------------------------------------ENVDSM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T HA C I++ +F + D L++E K + N E+K Sbjct: 83 WIGTFHAICSRILRVEIERIGFERNFTVYDRADQISLVKECLKDM---GVDPKNVEIKNE 139 Query: 192 FYEILEISNDEDIETLIS 209 I + N E I Sbjct: 140 INTISRLKNAGATEKNID 157 >gi|115472169|ref|NP_001059683.1| Os07g0492100 [Oryza sativa Japonica Group] gi|34393626|dbj|BAC83302.1| putative ATP-dependent DNA helicase [Oryza sativa Japonica Group] gi|50508450|dbj|BAD30552.1| putative ATP-dependent DNA helicase [Oryza sativa Japonica Group] gi|113611219|dbj|BAF21597.1| Os07g0492100 [Oryza sativa Japonica Group] gi|218199642|gb|EEC82069.1| hypothetical protein OsI_26061 [Oryza sativa Indica Group] Length = 1165 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 45/194 (23%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 +++ E + ++ + E SD T + A GSGKT +V RVL LL PS +L Sbjct: 278 KKYYEYLQSLNDRQREA-ACSDVTIPLMIVAGPGSGKTSTMVGRVLTLLKEEFPPSNILA 336 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAA+EM R+ ++ Sbjct: 337 MTFTTAAASEMRDRIGTVVGKAVAKE---------------------------------- 362 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE-------QSKKLIEEAKKSTLASI 180 + + T H+FC + + + TS F I ++++L+E K + L Sbjct: 363 ---IVISTFHSFCLQLCRTHAEKLGRTSEFIIYGNGQQRRAVIEAERLLESDKNNGLGDA 419 Query: 181 MLDNNEELKKAFYE 194 + + ++K +F + Sbjct: 420 NKNCDGDIKNSFKD 433 >gi|320102499|ref|YP_004178090.1| Exodeoxyribonuclease V [Isosphaera pallida ATCC 43644] gi|319749781|gb|ADV61541.1| Exodeoxyribonuclease V [Isosphaera pallida ATCC 43644] Length = 1214 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 41/207 (19%), Positives = 82/207 (39%), Gaps = 29/207 (14%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-----RLLLANAH-PSTLLCLTHTKA 73 T+ + +S+ AG GKT +L +R++ RLL + H ++ +T T A Sbjct: 15 TEQQAEAVKYRAGHLALSSGAGCGKTTVLSERLIAEYRERLLHTDFHDLRRVVAVTFTDA 74 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA E+ +R+ K + + + +L + Sbjct: 75 AARELLNRIRHC-------------------AWKSVDSKTNDRLACVWKNMLRGLDAAPI 115 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+FC ++++ L I F IA+E + L A L ++ +N+++L+ Sbjct: 116 GTFHSFCGRLIRRHALALGIDPAFTIANETLTPTLKSRAVVRCLRHLLTNNDDDLQI--- 172 Query: 194 EILEISNDEDIETLISDIISNRTALKL 220 + ++ +I+ +R A+ L Sbjct: 173 -FAVEEGLPAVRAMLEEILDDRDAVDL 198 >gi|195978018|ref|YP_002123262.1| ATP-dependent DNA helicase UvrD/PcrA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974723|gb|ACG62249.1| ATP-dependent DNA helicase UvrD/PcrA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 765 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 72/198 (36%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + +D ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLDGMNDKQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R P D Sbjct: 59 TFTNKAAREMRER----------------------ALALSPATKDTL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L++ K ++ LD + Sbjct: 84 ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRIVK----ALNLDPKKWS 135 Query: 189 KKAFYEILEISNDEDIET 206 +++ + + ++ ++ Sbjct: 136 ERSILATISNAKNDLLDE 153 >gi|322411887|gb|EFY02795.1| DNA helicase II [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 772 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 84/232 (36%), Gaps = 52/232 (22%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ +++ + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLNGMNDRQAQAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R P D Sbjct: 59 TFTNKAAREMKER----------------------ALALNPATKDTL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRREADHIGYNRNFTIIDTGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEIL-----EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 +++ + ++ +++ E +D+ S A + + L R + ++ Sbjct: 136 ERSILGTISNAKNDLLDEKGYEAQAADMYSQIVA-RCYKAYQEELRRSEALD 186 >gi|225012049|ref|ZP_03702486.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A] gi|225003604|gb|EEG41577.1| UvrD/REP helicase [Flavobacteria bacterium MS024-2A] Length = 1059 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 8/185 (4%) Query: 35 WVSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 ++A AGSGKT+ LV R L LL + LL LT T A EM R+LE + S+ Sbjct: 20 IINAAAGSGKTYTLVLRYLIQLLGSKNSKSYRNLLALTFTNKAVNEMKERILETLLDLSN 79 Query: 92 LSDEILSAEITKIQGKKPNKSDMSK-ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 S + + T ++++ A +L IL G + T+ F I++ F E Sbjct: 80 NSLKENNIGETLCSELNIEPIELARKADKMLHQILFEYGSFDIITLDKFTHRIIRSFSRE 139 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE--LKKAFYEILEISNDEDIETLI 208 + F + K L+EE S + + + + L + + + +I+ + Sbjct: 140 LQLPYGFEVV--LDPKSLLEETVNSIIDKVGKEESLTRLLTDFSLDKVNQNQSWNIQKDL 197 Query: 209 SDIIS 213 D S Sbjct: 198 DDFAS 202 >gi|255037536|ref|YP_003088157.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053] gi|254950292|gb|ACT94992.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053] Length = 755 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 40/167 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 H++ + +++ + E +L + A AGSGKT +L R+ RL+ P +L L Sbjct: 2 NHNDYLSTLNEPQREAVL--HGNGPLMIIAGAGSGKTRVLTYRIARLIETGVDPFRILSL 59 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T A+ EM R+ + + Sbjct: 60 TFTNKASGEMRSRIEGAVGTEAR------------------------------------- 82 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ I++ TS F+I D + SK L+ K Sbjct: 83 -NIWMGTFHSVFAKILRIEARYLGYTSDFSIYDTDDSKSLLRSIIKE 128 >gi|228996315|ref|ZP_04155959.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock3-17] gi|228763419|gb|EEM12322.1| AddA (ATP-dependent deoxyribonuclease) [Bacillus mycoides Rock3-17] Length = 1182 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 32/175 (18%) Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122 LL +T T AAA EM +R+ E + K+ +P + K LL Sbjct: 2 DRLLVVTFTNAAAQEMKNRIGEAL---------------EKVLIDEPGSGHVRKQLSLL- 45 Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM- 181 + TIH+FC +++ + ++ F IA++ +++ L EE L Sbjct: 46 ------NKASISTIHSFCLQVIRTYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYG 99 Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ++ N+ + +D D++ +I L L ++ K ++K Sbjct: 100 IEGNDIFFELVDRYTSDRSDNDLQRMI---------LALHTESRAHPDPEKWLDK 145 >gi|325281708|ref|YP_004254250.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712] gi|324313517|gb|ADY34070.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712] Length = 756 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 38/164 (23%) Query: 14 IDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ++ I++ S +Q + + V A AGSGKT +L R+ +LL +L LT T Sbjct: 1 MNFINELNSSQQEAVINTEGPSLVIAGAGSGKTRVLTYRIAQLLSQGVPAYKILALTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ E++ E L Sbjct: 61 KAAREMQKRIAELVGQ-------------------------------------EIAANLW 83 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ + TS + I D + SK +I+ K Sbjct: 84 MGTFHSIFSKILRFEAEKLGYTSSYTIYDTQDSKNMIKAIVKDM 127 >gi|66360164|ref|XP_627217.1| UvrD like super family I helicase involved in nucleotide excision repair, possible bacterial horizontal transfer [Cryptosporidium parvum Iowa II] gi|46228624|gb|EAK89494.1| UvrD like super family I helicase involved in nucleotide excision repair, possible bacterial horizontal transfer [Cryptosporidium parvum Iowa II] Length = 917 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 14/161 (8%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 + ++ + ++ S + A G+GKT L R++R LL+ P +L LT TK AA E+ Sbjct: 36 LEQKKAVFTNHESSLLIVAGPGTGKTATLTSRIVRFLLSGYSP--ILALTFTKKAANELK 93 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV + ++ S + ++ +K + TP + + TIH+F Sbjct: 94 SRVSIVYSSSSKIIYSKSKQIKNDLRNEKG-----------FSDFVPTP-EIFIGTIHSF 141 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 C +++++ + AI D+E + KL++ L+ + Sbjct: 142 CWKLLKEYGSFIGLPKDIAIIDKELAIKLLKSCLSENLSKV 182 >gi|55821019|ref|YP_139461.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311] gi|55737004|gb|AAV60646.1| ATP-dependent DNA helicase [Streptococcus thermophilus LMG 18311] Length = 775 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 49/198 (24%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L++ +Q A + A AGSGKT +L R+ L+ +P +L +T T Sbjct: 10 LLTGMNDQQAEAVQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAITFTNK 69 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R + + A S + Sbjct: 70 AAREMRERAVALNPATSETL---------------------------------------I 90 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ C I+++ +F I D + + L+ K L ++ LD + ++A Sbjct: 91 ATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWNERAIL 146 Query: 194 EILEISNDEDIETLISDI 211 + + ++ L+ +I Sbjct: 147 GTISNAKND----LLDEI 160 >gi|168216491|ref|ZP_02642116.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens NCTC 8239] gi|182381517|gb|EDT78996.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens NCTC 8239] Length = 870 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 90/212 (42%), Gaps = 49/212 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74 +I+ + +Q + ++ + + A+AG+GKT+ L +RV ++ PS +LC+T T A Sbjct: 1 MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 EMS RV+ I+ + + ++ Sbjct: 61 CKEMSDRVMRIVGGEAK--------------------------------------DITIR 82 Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190 T H+FC +++ + +I S F I DE+ +++I + S ++ N +++K Sbjct: 83 TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREIISKLSYYYATSNLMATNMQIQKVID 142 Query: 191 ------AFYEILEISNDEDIETLISDIISNRT 216 A E LE ++ +T+I +I R Sbjct: 143 FIKVERARIETLEDRVLDEYKTVIDEIFKFRE 174 >gi|325266832|ref|ZP_08133503.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Kingella denitrificans ATCC 33394] gi|324981573|gb|EGC17214.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Kingella denitrificans ATCC 33394] Length = 782 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 64/203 (31%), Gaps = 44/203 (21%) Query: 6 SFQEHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63 SF E + L++ EQL A P +S V A AGSGKT +L R+ LL A + Sbjct: 46 SFSEQNPHFSLLNHLNPEQLSAVTYPAQSVLVLAGAGSGKTRVLTTRIAWLLQNGMAGVN 105 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L +T T AA EM R+ ++ Sbjct: 106 NILAVTFTNKAAKEMQTRLGAMLPV----------------------------------- 130 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 + + + T H C + +A + F I D K L + + Sbjct: 131 ---SLRAMWLGTFHGLCHRFLCLHYRDAQLPQSFQILDASDQLA----VVKRLLKQLGIA 183 Query: 184 NNEELKKAFYEILEISNDEDIET 206 + + + + Sbjct: 184 EETVAPRVLQGFINAQKESGLRA 206 >gi|223932458|ref|ZP_03624460.1| ATP-dependent DNA helicase PcrA [Streptococcus suis 89/1591] gi|223898912|gb|EEF65271.1| ATP-dependent DNA helicase PcrA [Streptococcus suis 89/1591] Length = 759 Score = 121 bits (304), Expect = 9e-26, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 76/211 (36%), Gaps = 51/211 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R P D Sbjct: 59 TFTNKAAREMKER----------------------AYALNPATQDCL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L ++ LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRSLM----KRILKNLNLDPKKWS 135 Query: 189 KKAFYEIL-----EISNDEDIETLISDIISN 214 +++ + ++ +D+ E D+ + Sbjct: 136 ERSILGTISNAKNDLIDDKAFEAQAGDLYTQ 166 >gi|315649755|ref|ZP_07902838.1| ATP-dependent DNA helicase PcrA [Paenibacillus vortex V453] gi|315274729|gb|EFU38110.1| ATP-dependent DNA helicase PcrA [Paenibacillus vortex V453] Length = 776 Score = 121 bits (303), Expect = 9e-26, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 45/192 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 E + ++ + + + A+D + A AGSGKT +L R+ L+ A P ++L +T Sbjct: 8 EAVKRLNPEQRKAVEATD--GPLLIMAGAGSGKTRVLTHRIGYLIATRKAAPWSILAITF 65 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV +++ Sbjct: 66 TNKAAREMQERVSKLVGREGQ--------------------------------------D 87 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + V T H+ C I+++ TS+F+I D +I ++ + +D + K Sbjct: 88 IWVSTFHSMCVRILRKDIERIGFTSNFSILDSTDQLSVI----RNVMKHHNIDPKKFEPK 143 Query: 191 AFYEILEISNDE 202 A + + +E Sbjct: 144 AVQAAMSAAKNE 155 >gi|322516818|ref|ZP_08069720.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis ATCC 49124] gi|322124655|gb|EFX96119.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis ATCC 49124] Length = 773 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + + ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 5 MNPLLTGMNDKQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAI 62 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + + A S Sbjct: 63 TFTNKAAREMRERAMALNPATSETL----------------------------------- 87 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L ++ LD + Sbjct: 88 ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWN 139 Query: 189 KKAFYEILEISNDEDIET 206 ++A + + ++ ++ Sbjct: 140 ERAILGTISNAKNDLLDE 157 >gi|217076812|ref|YP_002334528.1| ATP-dependent nuclease, subunit A, putative [Thermosipho africanus TCF52B] gi|217036665|gb|ACJ75187.1| ATP-dependent nuclease, subunit A, putative [Thermosipho africanus TCF52B] Length = 1041 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 28/159 (17%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLANAH------PSTLLCLTHTKAAAAEMSHRV 82 D ++ ++SA+AG+GKT + + +L ++ +T T+ AAAEM R+ Sbjct: 10 DINKNYFISASAGTGKTFTITNYYVEILKKYEKENYPEIVDEIVVVTFTRKAAAEMKERI 69 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 ++++ + SK + + + TI +FC+ Sbjct: 70 VKLVNE----------------------EFSQSKNKEYWSKVKNNLSRAIISTIDSFCQR 107 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 I+++ + A I F+I + +K IE A TL + Sbjct: 108 ILREENINAKIDPSFSIISNAKMEKYIERAVFLTLRYVF 146 >gi|224532709|ref|ZP_03673326.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi WI91-23] gi|224512327|gb|EEF82711.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi WI91-23] Length = 659 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S + + + + + A AGSGKT ++ R+ LLL +L LT T AA E Sbjct: 10 SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ +I+ + L V T H Sbjct: 70 MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180 AF +++ +F+I D+ L++E L+++ Sbjct: 92 AFGLYFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 151 Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219 + + + + + + E L + N D + LI +++SN + ++ Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 200 >gi|332035180|gb|EGI71690.1| exodeoxyribonuclease V beta chain [Pseudoalteromonas haloplanktis ANT/505] Length = 1192 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 69/172 (40%), Gaps = 14/172 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT+ + LR LL +L +T T AA E+ RV Sbjct: 16 LIEASAGTGKTYTITGLYLRYLLGMQIEGELNTPLSVEQILVVTFTDAATQEIKDRVRSR 75 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 I A + I+G D +A LL ++ + TIH FC+ +++ Sbjct: 76 IIAARDALLGQDPND-ELIEGVIAKIDDKHRAFDLLDAAAKSMDEAAIFTIHGFCQRMLK 134 Query: 146 QFPLEANITSHFA-IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 Q E+ + + I DE ++ E K + + N+E A ++ Sbjct: 135 QHAFESGVAFNLEFILDERD---ILLETIKDFWRAFVYPLNKERTDAILDVF 183 >gi|227485018|ref|ZP_03915334.1| ATP-dependent DNA helicase PcrA [Anaerococcus lactolyticus ATCC 51172] gi|227237015|gb|EEI87030.1| ATP-dependent DNA helicase PcrA [Anaerococcus lactolyticus ATCC 51172] Length = 731 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 57/164 (34%), Gaps = 41/164 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +D ++ + E +L D V A AGSGKT +L + + P ++ +T T Sbjct: 3 LDRLNDRQKEAVLHKD--GPLLVLAGAGSGKTSVLTSSIAYKIKEESVDPRNIIAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ L Sbjct: 61 KAANEMKERVSSLLDMDV--------------------------------------AYLW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I++ + +++F I D + + LI + K Sbjct: 83 IGTFHSICARILRMNIEKIGYSNNFTIYDTQDQRTLIRDIIKDL 126 >gi|110799207|ref|YP_694883.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens ATCC 13124] gi|110673854|gb|ABG82841.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens ATCC 13124] Length = 870 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 49/212 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74 +I+ + +Q + ++ + + A+AG+GKT+ L +RV ++ PS +LC+T T A Sbjct: 1 MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 EMS RV++I+ + + ++ Sbjct: 61 CKEMSDRVMKIVGGEAK--------------------------------------DITIR 82 Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190 T H+FC +++ + +I S F I DE+ +++I + S ++ N +++K Sbjct: 83 TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQKVID 142 Query: 191 ------AFYEILEISNDEDIETLISDIISNRT 216 A E LE ++ +T+I +I R Sbjct: 143 FIKVERARIETLEDRVLDEYKTVIDEIFKFRE 174 >gi|303233897|ref|ZP_07320546.1| putative ATP-dependent DNA helicase PcrA [Finegoldia magna BVS033A4] gi|302494822|gb|EFL54579.1| putative ATP-dependent DNA helicase PcrA [Finegoldia magna BVS033A4] Length = 724 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 63/197 (31%), Gaps = 42/197 (21%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 ++L + ++ + + A AGSGKT +L ++ L +L +T T Sbjct: 1 MNLDNLNDRQREAVENTDGPMLILAGAGSGKTKVLTTKIAYCLEKGLCSKYEILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV I+ E + Sbjct: 61 KAAKEMKERVENILQ--------------------------------------ENVDSMW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T HA C I++ +F + D + L++E K + N E+K Sbjct: 83 IGTFHAICSRILRVEIERIGFERNFTVYDRQDQISLVKECLKDM---GVDPKNVEIKNEI 139 Query: 193 YEILEISNDEDIETLIS 209 I + N E I Sbjct: 140 NTISRLKNAGATEKNID 156 >gi|218289369|ref|ZP_03493603.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius LAA1] gi|218240475|gb|EED07656.1| ATP-dependent DNA helicase PcrA [Alicyclobacillus acidocaldarius LAA1] Length = 757 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 79/235 (33%), Gaps = 50/235 (21%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 S+ + +++ + E + A+D V A AGSGKT +L +R++ L+ P +L + Sbjct: 7 ASDILKGLNEKQREAVTATD--GPVLVIAGAGSGKTSVLTRRIVYLIAERRVPPWAILAI 64 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R+ ++ + Sbjct: 65 TFTNKAAREMEERIERLVGPVA-------------------------------------- 86 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T HA C I+++ TS F + D L + + + +D + Sbjct: 87 SDIWTSTFHAMCARILRRDIHHLGYTSAFTVLDAADQVSL----VRRLMQEMNIDVRKFE 142 Query: 189 KKAFYEILEISNDE--DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +A + +E E + S + + + R++ E Sbjct: 143 PRAVLHAISQHKNELRSAEKALDLAGSPYDKMVGDVYL---AYERRLRENQALDF 194 >gi|312862860|ref|ZP_07723100.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis F0396] gi|311101720|gb|EFQ59923.1| ATP-dependent DNA helicase PcrA [Streptococcus vestibularis F0396] Length = 769 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + + ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLTGMNDKQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + + A S Sbjct: 59 TFTNKAAREMRERAMALNPATSETL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L ++ LD + Sbjct: 84 ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKTLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++A + + ++ ++ Sbjct: 136 ERAILGTISNAKNDLLDE 153 >gi|304436816|ref|ZP_07396782.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370188|gb|EFM23847.1| ATP-dependent DNA helicase PcrA [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 746 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 76/230 (33%), Gaps = 52/230 (22%) Query: 14 IDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL+ +Q + + A AGSGKT +L R+ LL P +L +T T Sbjct: 1 MDLMQGLNEPQQRAVACLQGPLLIVAGAGSGKTRVLTFRIANLLEHGVPPYRILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV +I + + Sbjct: 61 KAAREMRERVDALIGDAAQ--------------------------------------DVW 82 Query: 133 VQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+FC ++ + +F I D SK L+ E L + +D A Sbjct: 83 LSTFHSFCARFLRMELEHYGRYAKNFVIYDAADSKGLLREC----LKELNIDEKHTAPGA 138 Query: 192 FYEILEISNDEDIETLISDIISNRTAL------KLIFFFFSYLWRRKIIE 235 + + + ++ ++ + T K+ + S L ++ Sbjct: 139 VQAHISDAKNRLLD--VAAFTAQATDFFAEQVAKIYALYQSKLQENNALD 186 >gi|329770175|ref|ZP_08261566.1| hypothetical protein HMPREF0433_01330 [Gemella sanguinis M325] gi|328837076|gb|EGF86718.1| hypothetical protein HMPREF0433_01330 [Gemella sanguinis M325] Length = 1221 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 37/223 (16%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T + S V+A AGSGKT +L +R+ R + +L LT T AAA Sbjct: 18 PTPPQWQAISITGADILVAAAAGSGKTEVLSERIARKVACDRWDIDKMLVLTFTTAAAKN 77 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ IT + +L+ E+ + ++ + K R L+ L V TI Sbjct: 78 MLVRIENKIT------ERLLATELEE------DRLFLRKQRMLMNNAL-------VTTID 118 Query: 138 AFCEAIMQQFPLEAN---------ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 +FC +++++F ++ +F++ SK L+ +A L ++ + Sbjct: 119 SFCLSVLKKFYYLVEEKIDGEYKYLSPNFSVLPN--SKNLLVDAINEVLEQ-YAKEDKNI 175 Query: 189 KKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231 + + IL N+ ++S II L I F YL + Sbjct: 176 TDSLFTILGDKNN-----IVSSIIDVYYKLLTIPNFEEYLDKD 213 >gi|224533580|ref|ZP_03674169.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi CA-11.2a] gi|224513253|gb|EEF83615.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi CA-11.2a] Length = 659 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S + + + + + A AGSGKT ++ R+ LLL +L LT T AA E Sbjct: 10 SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ +I+ + L V T H Sbjct: 70 MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180 AF +++ +F+I D+ L++E L+++ Sbjct: 92 AFGLYFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 151 Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219 + + + + + + E L + N D + LI +++SN + ++ Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 200 >gi|168209034|ref|ZP_02634659.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens B str. ATCC 3626] gi|170712869|gb|EDT25051.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens B str. ATCC 3626] Length = 870 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 49/212 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74 +I+ + +Q + ++ + + A+AG+GKT+ L +RV ++ PS +LC+T T A Sbjct: 1 MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 EMS RV++I+ + + ++ Sbjct: 61 CKEMSDRVMKIVGGEAK--------------------------------------EITIR 82 Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190 T H+FC +++ + +I S F I DE+ +++I + S ++ N +++K Sbjct: 83 TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQKVID 142 Query: 191 ------AFYEILEISNDEDIETLISDIISNRT 216 A E LE ++ +T+I +I R Sbjct: 143 FIKVERARIETLEDRVLDEYKTVIDEIFKFRE 174 >gi|78778691|ref|YP_396803.1| ATP-dependent DNA helicase Rep [Prochlorococcus marinus str. MIT 9312] gi|78712190|gb|ABB49367.1| ATP-dependent DNA helicase, Rep family [Prochlorococcus marinus str. MIT 9312] Length = 802 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 18/166 (10%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76 S K + V A AGSGKT L R+ L+ N P +L +T T AA Sbjct: 11 SLNKQQLQAVKHVYGPLLVVAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAK 70 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ ++ + K + ++++ + R L + T Sbjct: 71 EMKARLEVLLAQELAFNQFGQPWTTLKEIDQNQLRTNVHQER---------LQNLWIGTF 121 Query: 137 HAFCEAIMQQFPLEANITS-------HFAIADEEQSKKLIEEAKKS 175 H+ +++ + +E F+I DE S+ L++E Sbjct: 122 HSLFSRLLR-YDIEKYTDPEGLKWTRQFSIYDETDSQTLVKEIISQ 166 >gi|94309177|ref|YP_582387.1| UvrD/REP helicase [Cupriavidus metallidurans CH34] gi|93353029|gb|ABF07118.1| putative ATP-dependent DNA helicase [Cupriavidus metallidurans CH34] Length = 702 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 59/163 (36%), Gaps = 31/163 (19%) Query: 16 LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 +S+ EQ A D + A AGSGKT+ L RV L++ A P +L LT ++ Sbjct: 24 YLSRLNPEQRAAVEYDGDAPLLIIAGAGSGKTNTLAHRVAHLVVNGADPRRILLLTFSRR 83 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA+EM RV I+ + A + Sbjct: 84 AASEMGRRVERIVDQALGIQTGAGRAALQ-----------------------------WS 114 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA +++++ + F I+D + L+ + Sbjct: 115 GTFHAIGARLLREYAETLGLAPTFTISDRGDAADLMHVVRHDL 157 >gi|146318385|ref|YP_001198097.1| superfamily I DNA/RNA helicase [Streptococcus suis 05ZYH33] gi|146320577|ref|YP_001200288.1| superfamily I DNA/RNA helicase [Streptococcus suis 98HAH33] gi|253751530|ref|YP_003024671.1| putative ATP-dependent DNA helicase [Streptococcus suis SC84] gi|253753431|ref|YP_003026572.1| ATP-dependent DNA helicase [Streptococcus suis P1/7] gi|253755741|ref|YP_003028881.1| ATP-dependent DNA helicase [Streptococcus suis BM407] gi|145689191|gb|ABP89697.1| Superfamily I DNA and RNA helicase [Streptococcus suis 05ZYH33] gi|145691383|gb|ABP91888.1| Superfamily I DNA and RNA helicase [Streptococcus suis 98HAH33] gi|251815819|emb|CAZ51427.1| putative ATP-dependent DNA helicase [Streptococcus suis SC84] gi|251818205|emb|CAZ56006.1| putative ATP-dependent DNA helicase [Streptococcus suis BM407] gi|251819677|emb|CAR45461.1| putative ATP-dependent DNA helicase [Streptococcus suis P1/7] gi|319757962|gb|ADV69904.1| superfamily I DNA/RNA helicase [Streptococcus suis JS14] Length = 759 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 76/211 (36%), Gaps = 51/211 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYALNPATQACL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L ++ LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRSLM----KRILKNLNLDPKKWS 135 Query: 189 KKAFYEIL-----EISNDEDIETLISDIISN 214 +++ + ++ +D+ E D+ + Sbjct: 136 ERSILGTISNAKNDLIDDKAFEAQAGDLYTQ 166 >gi|222084834|ref|YP_002543363.1| ATP-dependent DNA helicase protein [Agrobacterium radiobacter K84] gi|221722282|gb|ACM25438.1| ATP-dependent DNA helicase protein [Agrobacterium radiobacter K84] Length = 689 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 59/170 (34%), Gaps = 38/170 (22%) Query: 16 LISQTKSEQLLASDPT---------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66 + + EQ LA + V A AGSGKT+ L RV L++ A P +L Sbjct: 5 YLEKLNPEQRLAVEHGTTVEGSHIAGPLLVIAGAGSGKTNTLAHRVAHLIVKGADPRRIL 64 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T ++ AAAEM RV I + I++ + Sbjct: 65 LMTFSRRAAAEMGRRVERICREVLGANAGIMADAL------------------------- 99 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++ + + + F I D E S L+ + Sbjct: 100 ----AWTGTFHGIGARLLRDYAEQIGLDPAFTIHDREDSADLMNLIRHDL 145 >gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62] gi|254040629|gb|ACT57425.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62] Length = 685 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 44/194 (22%) Query: 15 DLISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71 + + ++Q A + A AG+GKT +L+ R+L L+ PS +L +T T Sbjct: 25 NYLKGLNAQQTHAVTIPDDTPLLILAGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFT 84 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 A EM +R+ + Sbjct: 85 NQAIQEMKNRLACYLGEKIP---------------------------------------- 104 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEELKK 190 ++QT H+FC +I+++ + + FAI D +S+ +I++ K + D +E ++K Sbjct: 105 RIQTFHSFCASILRKHGEVVGLPTDFAILDSAESRTIIKQLLKDLQIDDKDYDPHEVIEK 164 Query: 191 AFYEILEISNDEDI 204 Y N +DI Sbjct: 165 IDYWQNRGWNPKDI 178 >gi|83309824|ref|YP_420088.1| superfamily I DNA/RNA helicase [Magnetospirillum magneticum AMB-1] gi|82944665|dbj|BAE49529.1| Superfamily I DNA and RNA helicase [Magnetospirillum magneticum AMB-1] Length = 864 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 63/186 (33%), Gaps = 43/186 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 + + V + AG+GKT +L R+ +L +N A P L +T T AA EM Sbjct: 140 NPEQFQAVTTTDGPVLVLSGAGTGKTKVLTSRLAHILASNLAQPWQCLAVTFTNRAAREM 199 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ S G+ + T H+ Sbjct: 200 KERVGQLVGPVS--------------------------------------DGIWLGTFHS 221 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C I++ + F + D + +++++ +A +D + ++ Sbjct: 222 LCLRILRSHAEAVGLGGDFTVLDSDDQMRVLKQ----VMAEAHVDPKGTPPQGLMATIQR 277 Query: 199 SNDEDI 204 D + Sbjct: 278 WKDRAV 283 >gi|319947280|ref|ZP_08021513.1| ATP-dependent DNA helicase PcrA [Streptococcus australis ATCC 700641] gi|319746522|gb|EFV98782.1| ATP-dependent DNA helicase PcrA [Streptococcus australis ATCC 700641] Length = 767 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 74/203 (36%), Gaps = 46/203 (22%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63 N E + ++ +++ ++E + ++ + A AGSGKT +L R+ L+ +P Sbjct: 2 NEEYEMNPLLNGMNERQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPW 59 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L +T T AA EM R ++ A Sbjct: 60 NILAITFTNKAAREMKERAYQLNPATQDCL------------------------------ 89 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 + T H+ C I+++ +F I D + + L+ K L + LD Sbjct: 90 ---------IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLD 136 Query: 184 NNEELKKAFYEILEISNDEDIET 206 + ++ + + ++ I+ Sbjct: 137 PKKWNERTILGTISNAKNDLIDE 159 >gi|312149185|gb|ADQ29256.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi N40] Length = 659 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S + + + + + A AGSGKT ++ R+ LLL +L LT T AA E Sbjct: 10 SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ +I+ + L V T H Sbjct: 70 MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180 AF +++ +F+I D+ L++E L+++ Sbjct: 92 AFGLYFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 151 Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219 + + + + + + E L + N D + LI +++SN + ++ Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 200 >gi|8928266|sp|Q9S3Q0|PCRA_LEUCI RecName: Full=ATP-dependent DNA helicase pcrA gi|5762478|gb|AAD51119.1|AF176554_1 DNA helicase PcrA [Leuconostoc citreum] Length = 749 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 38/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 + + A AGSGKT +L R+ L+ N P +L +T T AA EM Sbjct: 11 NNKQAEAVQTTEGPLLIMAGAGSGKTRVLTHRIAHLVQDLNVFPWRILAITFTNKAAREM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +++ + + V T HA Sbjct: 71 RERIAALLSE-------------------------------------DVARDIWVSTFHA 93 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 I+++ + +F I D + L++ Sbjct: 94 LAVRILRRDGEAIGLAKNFTIIDTSAQRTLMKRVINDL 131 >gi|329116495|ref|ZP_08245212.1| ATP-dependent DNA helicase PcrA [Streptococcus parauberis NCFD 2020] gi|326906900|gb|EGE53814.1| ATP-dependent DNA helicase PcrA [Streptococcus parauberis NCFD 2020] Length = 764 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 78/203 (38%), Gaps = 46/203 (22%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ +++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLNGMNEKQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R A L ++T Sbjct: 59 TFTNKAAREMRDR-----------------------------------ALALNPATIDTL 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L S+ LD + Sbjct: 84 ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKSLNLDPKKWS 135 Query: 189 KKAFYEILEISNDEDIETLISDI 211 +++ + + ++ ++ I + Sbjct: 136 ERSILGTISNAKNDLLDEKIFEA 158 >gi|315126291|ref|YP_004068294.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Pseudoalteromonas sp. SM9913] gi|315014805|gb|ADT68143.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Pseudoalteromonas sp. SM9913] Length = 1188 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 14/172 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHP---------STLLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT+ + LR LL P +L +T T AA E+ RV Sbjct: 16 LIEASAGTGKTYTITGLYLRYLLGMQIPGELSTPLSVEQILVVTFTDAATQEIKDRVRSR 75 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 I A + + I+G D +A LL ++ + TIH FC+ +++ Sbjct: 76 IIAARDALLGQVPND-ELIEGVIAGVDDKHRAFDLLDAAAKSMDEAAIFTIHGFCQRMLK 134 Query: 146 QFPLEANITSHFA-IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 Q E+ + + I DE + ++ E K + + N++ A E+ Sbjct: 135 QHAFESGVAFNLEFILDERE---ILLETIKDFWRAFVYPLNKQKTNAILEVF 183 >gi|284047984|ref|YP_003398323.1| ATP-dependent DNA helicase PcrA [Acidaminococcus fermentans DSM 20731] gi|283952205|gb|ADB47008.1| ATP-dependent DNA helicase PcrA [Acidaminococcus fermentans DSM 20731] Length = 750 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 DL++ +Q A + A AGSGKT L ++ LL P +L +T T Sbjct: 3 DLLASLNEQQAEAVRQIAGPILILAGAGSGKTKALTTKIAYLLEKGVKPWNILAITFTNK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++ + + + Sbjct: 63 AAKEMRQRVDALVGPSAK--------------------------------------DVWL 84 Query: 134 QTIHAFCEAIMQQFPLEA-NITSHFAIADEEQSKKLIEEAKKST 176 T H FC ++++ T+ F+I D K +++EA K Sbjct: 85 YTFHGFCNQLLRRDINALPGYTTSFSIYDPSDCKNVLKEALKKL 128 >gi|163756230|ref|ZP_02163345.1| ATP-dependent DNA helicase II [Kordia algicida OT-1] gi|161323842|gb|EDP95176.1| ATP-dependent DNA helicase II [Kordia algicida OT-1] Length = 778 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 56/162 (34%), Gaps = 38/162 (23%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 I+Q Q + + V A AGSGKT +L R+ L+ +L LT T A Sbjct: 8 YINQLNDAQRAPTLHKDGALMVIAGAGSGKTRVLTYRIAYLMSQGIDAFNILSLTFTNKA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM +R+ I+ + L + Sbjct: 68 AREMKNRIANIVGGSEAKN-------------------------------------LWMG 90 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ + S+F I D + S++LI K Sbjct: 91 TFHSIFAKILRFEADKLGYPSNFTIYDTQDSERLIRSIIKEM 132 >gi|307730566|ref|YP_003907790.1| UvrD/REP helicase [Burkholderia sp. CCGE1003] gi|307585101|gb|ADN58499.1| UvrD/REP helicase [Burkholderia sp. CCGE1003] Length = 812 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 60/174 (34%), Gaps = 38/174 (21%) Query: 11 SETIDLISQTKSEQLLASDPTRS--------AWVSANAGSGKTHILVQRVLRLLLANAHP 62 S+ +++ Q A D V A AGSGKT+ L RV L++ A P Sbjct: 42 SDATAWLAKLNDAQRQAVDHGADMRGALPGALLVIAGAGSGKTNTLAHRVANLVVKGADP 101 Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122 +L LT ++ AA EM+ RV I TA L Sbjct: 102 RRILLLTFSRRAAQEMTRRVTRIATA------------------------------ALGT 131 Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G T H+ +++++ + F I D E S L+ + Sbjct: 132 RAALAQGLTWAGTFHSVGARLLREYAELIGLAPAFTINDREDSADLMNLVRHEL 185 >gi|258508010|ref|YP_003170761.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus GG] gi|257147937|emb|CAR86910.1| ATP-dependent DNA helicase PcrA [Lactobacillus rhamnosus GG] gi|259649338|dbj|BAI41500.1| DNA helicase [Lactobacillus rhamnosus GG] Length = 750 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 73/194 (37%), Gaps = 44/194 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + ++ ++E +LA++ + A AGSGKT +L R+ L+ N +P +L +T T Sbjct: 6 ALKGMNDKQAEAVLATE--GPVLIMAGAGSGKTRVLTHRIAYLVEEKNVNPWNILAITFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +++ E + Sbjct: 64 NKAAREMRERVGKLVDP-------------------------------------EIARDI 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T HA C I+++ + F IAD + L K LA LD K+ Sbjct: 87 WVSTFHALCVRILRRDIDKLGYNRAFMIADPAEQLTL----VKHILADFNLDPKRYDPKS 142 Query: 192 FYEILEISNDEDIE 205 + + +E I+ Sbjct: 143 ILGAISGAKNELID 156 >gi|221218096|ref|ZP_03589562.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 72a] gi|221192044|gb|EEE18265.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 72a] Length = 659 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 65/229 (28%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S + + + + + A AGSGKT ++ R+ LLL +L LT T AA E Sbjct: 10 SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ +I+ + L V T H Sbjct: 70 MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS---------------------- 175 AF +++ +F+I D+ L++E Sbjct: 92 AFGLYFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNIISLLKN 151 Query: 176 --TLASIMLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219 + + + + + + + E L + N D + LI +++SN + ++ Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 200 >gi|151945237|gb|EDN63486.1| DNA helicase [Saccharomyces cerevisiae YJM789] Length = 1174 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 38/167 (22%) Query: 13 TIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 + L+SQ ++Q A+ D TR V A G+GKT +L RV L+L + HP ++ T Sbjct: 8 LLHLVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTT 67 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ E++ E+L Sbjct: 68 FTNKAANEMKERLQEMLRGAGVNISELL-------------------------------- 95 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+ +F ++ + I DE++ ++++ + Sbjct: 96 ---IGTFHSICLKILYRFGHLVDLQKDWRIIDEKEIDVILDDMIEKV 139 >gi|255009003|ref|ZP_05281129.1| ATP-dependent helicase [Bacteroides fragilis 3_1_12] gi|313146743|ref|ZP_07808936.1| ATP-dependent helicase [Bacteroides fragilis 3_1_12] gi|313135510|gb|EFR52870.1| ATP-dependent helicase [Bacteroides fragilis 3_1_12] Length = 1057 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 75/175 (42%), Gaps = 9/175 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + Sbjct: 5 IVYKASAGSGKTFTLATEYIKLLIQNPRAYRQILAVTFTNKATAEMKERILSQLYGIHIV 64 Query: 93 SDEILSAEITKIQGKKPNKSDMSK-ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 + + I ++ ++ K A L +L +V+TI +F +++M+ E Sbjct: 65 DPDSDAYLKRIIAETGRSEDEIRKTAGIALSYMLHDYSRFRVETIDSFFQSVMRNLAREL 124 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 ++ + I E + +++ +A S + + + +L+ N+ + Sbjct: 125 ELSPNLNI--ELNNIEVLSDAVDSMIEKLGPN-----SPVLAWLLDYINERIADD 172 >gi|225549593|ref|ZP_03770559.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 118a] gi|225369870|gb|EEG99317.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 118a] Length = 659 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S + + + + + A AGSGKT ++ R+ LLL +L LT T AA E Sbjct: 10 SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ +I+ + L V T H Sbjct: 70 MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180 AF +++ +F+I D+ L++E L+++ Sbjct: 92 AFGLYFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 151 Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219 + + + + + + E L + N D + LI +++SN + ++ Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 200 >gi|46199364|ref|YP_005031.1| DNA helicase uvrD [Thermus thermophilus HB27] gi|46196989|gb|AAS81404.1| DNA helicase uvrD [Thermus thermophilus HB27] Length = 692 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 56/163 (34%), Gaps = 41/163 (25%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 L++ Q A A V A AGSGKT +V RV L+ PS +L +T T Sbjct: 5 LLAPLNEAQRQAVLHFEGPALVVAGAGSGKTRTVVHRVAYLVARRGVFPSEILAVTFTNK 64 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ G + V Sbjct: 65 AAEEMRERLRGLVPGA---------------------------------------GEVWV 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA I++ + + F + DE+ L++E K Sbjct: 86 STFHAAALRILRVYGERVGLRPGFVVYDEDDQTALLKEVLKEL 128 >gi|116619175|ref|YP_821331.1| UvrD/REP helicase [Candidatus Solibacter usitatus Ellin6076] gi|116222337|gb|ABJ81046.1| UvrD/REP helicase [Candidatus Solibacter usitatus Ellin6076] Length = 1088 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 19/168 (11%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 +D RS V A+AG+GKT LV R++ ++ A T++ +T T AAA M RV + Sbjct: 8 ADLERSWVVEASAGTGKTTALVDRMVEVIAAGTPVETIVAVTFTHAAAGNMKLRVRHEL- 66 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 ++ R L + + TIHAFC ++++ Sbjct: 67 ------------------ERRRAAETDEAIRLRLADAARSLDRAFIGTIHAFCAQLLRRR 108 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 P+EA + F + + ++ + + + + L +A + Sbjct: 109 PVEAQVDPVFQELAQADALRVFGRMFRRWIEGKLARPSPALSRALARM 156 >gi|317050280|ref|YP_004111396.1| UvrD/REP helicase [Desulfurispirillum indicum S5] gi|316945364|gb|ADU64840.1| UvrD/REP helicase [Desulfurispirillum indicum S5] Length = 643 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 59/170 (34%), Gaps = 41/170 (24%) Query: 8 QEHSETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66 Q+ S+ I SQ ++Q A + A + A AGSGKT +L R++ LL P +L Sbjct: 5 QDISQAI--FSQLNTQQGAAVAHVDGPALILAGAGSGKTRVLTARIMNLLQQGVAPWNIL 62 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ + + Sbjct: 63 AVTFTNKAAGEMRQRIRSRLGPVA------------------------------------ 86 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T H+ I++ S F I D K++ + K Sbjct: 87 --SDIWIGTFHSIALRILRIECHHIGYESDFVIYDPADGLKVVTKVLKRL 134 >gi|91069901|gb|ABE10830.1| UvrD/REP helicase [uncultured Prochlorococcus marinus clone ASNC2150] Length = 802 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 61/166 (36%), Gaps = 18/166 (10%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76 S + V A AGSGKT L R+ L+ N P +L +T T AA Sbjct: 11 SLNNQQLQAVKHVYGPLLVIAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAK 70 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ ++ + K + ++++ + R L + T Sbjct: 71 EMKARLEVLLAQELAFNQFGQPWTTLKEIDQNQLRTNVHQER---------LQNLWIGTF 121 Query: 137 HAFCEAIMQQFPLEANITS-------HFAIADEEQSKKLIEEAKKS 175 H+ +++ + +E F+I DE S+ L++E Sbjct: 122 HSLFSRLLR-YDIEKYTDPEGLKWTRQFSIYDETDSQTLVKEIISQ 166 >gi|228477389|ref|ZP_04062025.1| ATP-dependent DNA helicase PcrA [Streptococcus salivarius SK126] gi|228250824|gb|EEK10012.1| ATP-dependent DNA helicase PcrA [Streptococcus salivarius SK126] Length = 769 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + + ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLTGMNDKQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMINPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + + A S Sbjct: 59 TFTNKAAREMRERAMALNPATSETL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L ++ LD + Sbjct: 84 ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++A + + ++ ++ Sbjct: 136 ERAILGTISNAKNDLLDE 153 >gi|218249903|ref|YP_002375114.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi ZS7] gi|226321913|ref|ZP_03797439.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi Bol26] gi|218165091|gb|ACK75152.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi ZS7] gi|226233102|gb|EEH31855.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi Bol26] Length = 659 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S + + + + + A AGSGKT ++ R+ LLL +L LT T AA E Sbjct: 10 SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ +I+ + L V T H Sbjct: 70 MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180 AF +++ +F+I D+ L++E L+++ Sbjct: 92 AFGLYFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 151 Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219 + + + + + + E L + N D + LI +++SN + ++ Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 200 >gi|15594952|ref|NP_212741.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Borrelia burgdorferi B31] gi|223889056|ref|ZP_03623646.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 64b] gi|2688535|gb|AAC66967.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Borrelia burgdorferi B31] gi|223885482|gb|EEF56582.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 64b] Length = 659 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S + + + + + A AGSGKT ++ R+ LLL +L LT T AA E Sbjct: 10 SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ +I+ + L V T H Sbjct: 70 MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180 AF +++ +F+I D+ L++E L+++ Sbjct: 92 AFGLYFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 151 Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219 + + + + + + E L + N D + LI +++SN + ++ Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 200 >gi|225870395|ref|YP_002746342.1| ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047] gi|225699799|emb|CAW93615.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. equi 4047] Length = 763 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 72/198 (36%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + +D ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLDGMNDKQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R P D Sbjct: 59 TFTNKAAREMRER----------------------ALALSPATKDTL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L++ K ++ LD + Sbjct: 84 ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRIVK----ALNLDPKKWS 135 Query: 189 KKAFYEILEISNDEDIET 206 +++ + + ++ ++ Sbjct: 136 ERSILATISNAKNDLLDE 153 >gi|182624633|ref|ZP_02952415.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens D str. JGS1721] gi|177910237|gb|EDT72625.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens D str. JGS1721] Length = 876 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 49/212 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74 +I+ + +Q + ++ + + A+AG+GKT+ L +RV ++ PS +LC+T T A Sbjct: 7 MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 EMS RV++I+ + + ++ Sbjct: 67 CKEMSDRVMKIVGGEAK--------------------------------------DITIR 88 Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190 T H+FC +++ + +I S F I DE+ +++I + S ++ N +++K Sbjct: 89 TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLNYYYATSNLMATNMQIQKVID 148 Query: 191 ------AFYEILEISNDEDIETLISDIISNRT 216 A E LE ++ +T+I +I R Sbjct: 149 FIKVERARIETLEDRVLDEYKTVIDEIFKFRE 180 >gi|225548716|ref|ZP_03769763.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 94a] gi|225370746|gb|EEH00182.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi 94a] Length = 659 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S + + + + + A AGSGKT ++ R+ LLL +L LT T AA E Sbjct: 10 SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ +I+ + L V T H Sbjct: 70 MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180 AF +++ +F+I D+ L++E L+++ Sbjct: 92 AFGLYFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 151 Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219 + + + + + + E L + N D + LI +++SN + ++ Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 200 >gi|148654325|ref|YP_001274530.1| UvrD/REP helicase [Roseiflexus sp. RS-1] gi|148566435|gb|ABQ88580.1| UvrD/REP helicase [Roseiflexus sp. RS-1] Length = 751 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 68/188 (36%), Gaps = 42/188 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L + ++Q + V A GSGKT +L RV L+ + P T+L +T T A Sbjct: 8 LSALNPAQQQAVTVDPGPVLVLAGPGSGKTRVLTHRVAYLIGVQGVDPHTILAVTFTNKA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R++ +I A L V Sbjct: 68 AREMRDRLVALIGAGQS-------------------------------------AALTVG 90 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C +++ + FAI D + +++ K L + LD + +A + Sbjct: 91 TFHSICARFLRRDIVHLGRERDFAIYDTDDQLRVM----KRVLRDLNLDEKKHPPRAIHA 146 Query: 195 ILEISNDE 202 + + +E Sbjct: 147 AISRAKNE 154 >gi|124005926|ref|ZP_01690764.1| UvrD/REP helicase domain protein, putative [Microscilla marina ATCC 23134] gi|123988609|gb|EAY28250.1| UvrD/REP helicase domain protein, putative [Microscilla marina ATCC 23134] Length = 949 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 24/201 (11%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPST---LLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 S++AGSGKT+ L + L+L L P +L +T T AA EM R++ + ++ Sbjct: 7 SSSAGSGKTYTLTREYLKLALQGDQPHYFKYILAITFTNDAANEMKARIVNALQGFAQPD 66 Query: 94 ---------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + L I + G P K ++A+ + + I+ V TI F I Sbjct: 67 TLDDKARKGSDQLLFGIAEELGVAPEKL-RTRAQKVFVKIIYNYSDFAVSTIDRFVNKIT 125 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED- 203 F E +I ++ + + + KL+E A LA + + E L + E +E Sbjct: 126 TAFTQELDIPYNYDV--DLDTDKLLETAIDRVLAKVGRETKENLSNILVDWAEKKAEEGK 183 Query: 204 --------IETLISDIISNRT 216 + D+++ R+ Sbjct: 184 NWAQIAPELADFSKDLMNERS 204 >gi|322389226|ref|ZP_08062787.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC 903] gi|321144131|gb|EFX39548.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis ATCC 903] Length = 767 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 74/203 (36%), Gaps = 46/203 (22%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63 N E + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P Sbjct: 2 NEEYEMNPLLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPW 59 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L +T T AA EM R ++ A Sbjct: 60 NILAITFTNKAAREMKERAYQLNPATQDCL------------------------------ 89 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 + T H+ C I+++ +F I D + + L+ K L S+ LD Sbjct: 90 ---------IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKSLNLD 136 Query: 184 NNEELKKAFYEILEISNDEDIET 206 + ++ + + ++ I+ Sbjct: 137 PKKWNERTILGTISNAKNDLIDE 159 >gi|253583576|ref|ZP_04860774.1| ATP-dependent DNA helicase pcrA [Fusobacterium varium ATCC 27725] gi|251834148|gb|EES62711.1| ATP-dependent DNA helicase pcrA [Fusobacterium varium ATCC 27725] Length = 725 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 55/159 (34%), Gaps = 39/159 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ A + + A AGSGKT + R+ ++ P +L +T T AA EM Sbjct: 8 NDRQRKAAEKIEGALLILAGAGSGKTRTITYRIAHMIQELGISPYKILAVTFTNKAAKEM 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ E V T H+ Sbjct: 68 KERVEDLVG--------------------------------------EDGRRTMVSTFHS 89 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 F +++ + ++F I D + K++++ K + Sbjct: 90 FGVRLLRTYGDRLGYGANFTIYDADDQKRVVKGIMKELV 128 >gi|254468181|ref|ZP_05081587.1| ATP-dependent DNA helicase PcrA [beta proteobacterium KB13] gi|207086991|gb|EDZ64274.1| ATP-dependent DNA helicase PcrA [beta proteobacterium KB13] Length = 715 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 55/163 (33%), Gaps = 40/163 (24%) Query: 14 IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D + +Q A SA + A AGSGKT +L R+ L+ P+ +L +T T Sbjct: 3 LDYLKDLNEKQSEAVQLQNESALILAGAGSGKTKVLTSRISWLIHNQIVSPNGILAVTFT 62 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ + P G+ Sbjct: 63 NKAANEMLSRISLQLGM--------------------------------------NPRGM 84 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 V T H C ++ EA++ F I D I+ K Sbjct: 85 WVGTFHGLCNRFLRLHYKEASLPQTFQILDSSDQLSAIKRLCK 127 >gi|167957596|ref|ZP_02544670.1| ATP-dependent DNA helicase PcrA [candidate division TM7 single-cell isolate TM7c] Length = 702 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 56/155 (36%), Gaps = 35/155 (22%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHR 81 +Q + A AGSGKT L R+ ++ A PS +L +T T AA EM R Sbjct: 9 QQKAVETTEGPLLILAGAGSGKTKTLTHRIAYIISRGLAWPSQILAVTFTNKAAREMRER 68 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + ++ + + + T H C Sbjct: 69 LGSMLNQDYTQRNFMP----------------------------------WMGTFHGICV 94 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 I++ NI S+F I DE K ++++A KS Sbjct: 95 KILRIEGGIINIPSNFVIYDESDKKGVVKQAMKSL 129 >gi|188591039|ref|YP_001795639.1| ATP-dependent DNA helicase [Cupriavidus taiwanensis LMG 19424] gi|170937933|emb|CAP62917.1| putative ATP-dependent DNA helicase [Cupriavidus taiwanensis LMG 19424] Length = 702 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 60/163 (36%), Gaps = 31/163 (19%) Query: 16 LISQTKSEQLLASDPT--RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 +S+ EQ A + + A AGSGKT+ L RV L+L A P +L LT ++ Sbjct: 25 YLSRLNPEQRAAVEHGSEAPLLIIAGAGSGKTNTLAHRVAHLVLGGADPRRILLLTFSRR 84 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM RV I+ S A + Sbjct: 85 AAAEMGRRVERIVDQALGTSTGAGRAALQ-----------------------------WS 115 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA +++++ ++ F I+D S L+ + Sbjct: 116 GTFHAIGARLLREYAETLGLSPAFTISDRGDSADLMHVVRHDL 158 >gi|71894555|ref|YP_278663.1| ATP-dependent helicase [Mycoplasma synoviae 53] Length = 726 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 38/160 (23%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 ++ +Q A + S + A AG+GKT +L +++L L+L PS +L +T T Sbjct: 1 MLDDLNEKQREAVEYFDSHLRIIAGAGTGKTKVLTRKILYLILEKKVDPSKILAVTFTNK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ N K + L V Sbjct: 61 AAKEMKDRI---------------------------NSKYYDKQKVLFE---------NV 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T+H+FC +++++ + +F I DE K+++++ Sbjct: 85 FTLHSFCAQVLRKYINLIGFSRNFPILDELDKKQVLQDLY 124 >gi|157412666|ref|YP_001483532.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9215] gi|157387241|gb|ABV49946.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9215] Length = 802 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 22/168 (13%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76 S + V A AGSGKT L R+ L+ N P +L +T T AA Sbjct: 11 SLNNQQLQAVKHVYGPLLVVAGAGSGKTKALTHRIANLIENNSIDPYNILAVTFTNKAAK 70 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL--ETPGGLKVQ 134 EM R+ + +L+ E+ Q +P + ++ L T + E L + Sbjct: 71 EMKARL-----------EVLLAQELAFNQFGQPWTTLKEIDQNQLRTNVYQERLQNLWIG 119 Query: 135 TIHAFCEAIMQQFPLEANITS-------HFAIADEEQSKKLIEEAKKS 175 T H+ +++ + +E F+I DE S+ L++E Sbjct: 120 TFHSLFSRLLR-YDIEKYTDPEGLKWTRQFSIYDETDSQTLVKEIISQ 166 >gi|224539625|ref|ZP_03680164.1| hypothetical protein BACCELL_04533 [Bacteroides cellulosilyticus DSM 14838] gi|224518716|gb|EEF87821.1| hypothetical protein BACCELL_04533 [Bacteroides cellulosilyticus DSM 14838] Length = 916 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 87/210 (41%), Gaps = 12/210 (5%) Query: 34 AWVSANAGSGKTHIL-VQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW--- 89 A+AGSGKT L V+ + L+L +L +T T A AEM R+L+ + Sbjct: 4 LVYKASAGSGKTFTLAVEYIKHLILNPRAYRQILAVTFTNKATAEMKERILQQLYGIWLS 63 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKAR-HLLITILETPGGLKVQTIHAFCEAIMQQFP 148 S+ L+ ++ K + SD+ +A L +L +V+TI +F +++M+ Sbjct: 64 DPASEPYLNRIREDLRQKNLSDSDIRRAAGTALQYMLHDYSRFRVETIDSFFQSVMRNLA 123 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208 E ++ + I E + ++ +A S + + +L+ N+ + Sbjct: 124 RELELSPNLNI--ELNNADVLSDAVDSLIEKL-----TPSSPVLAWLLDYINERIADDKR 176 Query: 209 SDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 ++ F Y+ R + + + L Sbjct: 177 WNVSDEIKRFGWNIFDEGYIERGEGLRQQL 206 >gi|55981396|ref|YP_144693.1| UvrD protein [Thermus thermophilus HB8] gi|55772809|dbj|BAD71250.1| UvrD protein [Thermus thermophilus HB8] Length = 692 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 56/163 (34%), Gaps = 41/163 (25%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 L++ Q A A V A AGSGKT +V RV L+ PS +L +T T Sbjct: 5 LLAPLNEAQRQAVLHFEGPALVVAGAGSGKTRTVVHRVAYLVARRGVFPSEILAVTFTNK 64 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++ G + V Sbjct: 65 AAEEMRERLRGLVPGA---------------------------------------GEVWV 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA I++ + + F + DE+ L++E K Sbjct: 86 STFHAAALRILRVYGERVGLRPGFVVYDEDDQTALLKEVLKEL 128 >gi|312148323|gb|ADQ30982.1| ATP-dependent DNA helicase PcrA [Borrelia burgdorferi JD1] Length = 659 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S + + + + + A AGSGKT ++ R+ LLL +L LT T AA E Sbjct: 10 SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ +I+ + L V T H Sbjct: 70 MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180 AF +++ +F+I D+ L++E L+++ Sbjct: 92 AFGLYFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 151 Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219 + + + + + + E L + N D + LI +++SN + ++ Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 200 >gi|225868652|ref|YP_002744600.1| ATP-dependent DNA helicase [Streptococcus equi subsp. zooepidemicus] gi|225701928|emb|CAW99448.1| putative ATP-dependent DNA helicase [Streptococcus equi subsp. zooepidemicus] Length = 763 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 72/198 (36%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + +D ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLDGMNDKQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R P D Sbjct: 59 TFTNKAAREMRER----------------------ALALSPATKDTL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L++ K ++ LD + Sbjct: 84 ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLMKRIVK----ALNLDPKKWS 135 Query: 189 KKAFYEILEISNDEDIET 206 +++ + + ++ ++ Sbjct: 136 ERSILATISNAKNDLLDE 153 >gi|207344042|gb|EDZ71311.1| YJL092Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 987 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 38/167 (22%) Query: 13 TIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 + L+SQ ++Q A+ D TR V A G+GKT +L RV L+L + HP ++ T Sbjct: 8 WLHLVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTT 67 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ E++ E+L Sbjct: 68 FTNKAANEMKERLQEMLRGAGVNISELL-------------------------------- 95 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+ +F ++ + I DE++ ++++ + Sbjct: 96 ---IGTFHSICLKILYRFGHLVDLQKDWRIIDEKEIDVILDDMIEKV 139 >gi|167752257|ref|ZP_02424384.1| hypothetical protein ALIPUT_00500 [Alistipes putredinis DSM 17216] gi|167660498|gb|EDS04628.1| hypothetical protein ALIPUT_00500 [Alistipes putredinis DSM 17216] Length = 813 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 39/166 (23%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 S+ + ++Q + + ++ D + + A AGSGKT +L R+ ++ P +L LT Sbjct: 3 SQILKGLNQAQRDAVVNYD--SPSLIIAGAGSGKTRVLTSRIAYMIEQGVAPYNILALTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA +M R+ +++ H Sbjct: 61 TNKAAEQMRERIAQMLPDGRHR-------------------------------------Y 83 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 +++ T H+ I++ F I + K L++ K Sbjct: 84 IRMGTFHSVFSRILRDNAERIGFPQSFTIYEPSDCKNLLKTIVKEL 129 >gi|302380742|ref|ZP_07269207.1| putative ATP-dependent DNA helicase PcrA [Finegoldia magna ACS-171-V-Col3] gi|302311685|gb|EFK93701.1| putative ATP-dependent DNA helicase PcrA [Finegoldia magna ACS-171-V-Col3] Length = 724 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 62/197 (31%), Gaps = 42/197 (21%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 ++L + ++ + + A AGSGKT +L ++ L +L +T T Sbjct: 1 MNLDNLNDRQREAVENTDGPMLILAGAGSGKTKVLTTKIAYCLEKGLCSKYEILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV I+ E + Sbjct: 61 KAAKEMKERVENILQ--------------------------------------ENVDSMW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T HA C I++ +F + D L++E K + N E+K Sbjct: 83 IGTFHAICSRILRVEIERIGFERNFTVYDRADQISLVKECLKDM---GVDPKNVEIKNEI 139 Query: 193 YEILEISNDEDIETLIS 209 I + N E I Sbjct: 140 NTISRLKNAGATEKNID 156 >gi|300813299|ref|ZP_07093654.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512570|gb|EFK39715.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 720 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 40/163 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 ID ++ + E LL ++ + A AGSGKT ++ ++ L+ +L +T T Sbjct: 3 IDSLNDKQKEALLYNE--GPLLILAGAGSGKTKVVTSKIAYLIENEVPSWRILAITFTNK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +I E + + Sbjct: 61 AAREMRERVAMLID--------------------------------------EDVSPMWI 82 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA C I+++ S++ I D +I+E+ K Sbjct: 83 GTFHAICVRILRKNIENLGYGSNYNIYDRADQNTIIKESYKEL 125 >gi|170764220|ref|ZP_02638287.2| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens CPE str. F4969] gi|170715785|gb|EDT27967.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens CPE str. F4969] Length = 876 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 49/212 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74 +I+ + +Q + ++ + + A+AG+GKT+ L +RV ++ PS +LC+T T A Sbjct: 7 MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 EMS RV++I+ + + ++ Sbjct: 67 CKEMSDRVMKIVGGEAK--------------------------------------EITIR 88 Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190 T H+FC +++ + +I S F I DE+ +++I + S ++ N +++K Sbjct: 89 TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQKVID 148 Query: 191 ------AFYEILEISNDEDIETLISDIISNRT 216 A E LE ++ +T+I +I R Sbjct: 149 FIKVERARIETLEDRVLDEYKTVIDEIFKFRE 180 >gi|322387882|ref|ZP_08061489.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis ATCC 700779] gi|321141155|gb|EFX36653.1| ATP-dependent DNA helicase PcrA [Streptococcus infantis ATCC 700779] Length = 762 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 72/198 (36%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R G P D Sbjct: 59 TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIIDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 +++ + + ++ I+ Sbjct: 136 ERSILGTISNAKNDLIDD 153 >gi|170764037|ref|ZP_02630402.2| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens E str. JGS1987] gi|170664085|gb|EDT16768.1| helicase, UvrD/REP/exonuclease family protein [Clostridium perfringens E str. JGS1987] Length = 876 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 91/212 (42%), Gaps = 49/212 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74 +I+ + +Q + ++ + + A+AG+GKT+ L +R+ ++ PS +LC+T T A Sbjct: 7 MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERITSIIKNGNSKPSEILCITFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 EMS RV++I+ + + ++ Sbjct: 67 CKEMSDRVMKIVGGEAK--------------------------------------DITIR 88 Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190 T H+FC +++ + +I S F I DE+ +++I + S ++ N +++K Sbjct: 89 TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQKVID 148 Query: 191 ------AFYEILEISNDEDIETLISDIISNRT 216 A E LE ++ +T+I +I R Sbjct: 149 FIKVERARIETLEDRVLDEYKTVIDEIFKFRE 180 >gi|331004225|ref|ZP_08327704.1| hypothetical protein HMPREF0491_02566 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411498|gb|EGG90909.1| hypothetical protein HMPREF0491_02566 [Lachnospiraceae oral taxon 107 str. F0167] Length = 735 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 41/167 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 S D ++ + + + A AGSGKT +L+ R+ L+ + P ++ + Sbjct: 1 MSGIYDKLNDKQKQ--AVFTTEGPVLLLAGAGSGKTGVLMHRIAYLIEEKHIDPYNIMAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R+ ++I + Sbjct: 59 TFTNKAAKEMKERIGKLIGEEGNF------------------------------------ 82 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + V T H+ C +++F + F I D + + L+++ K Sbjct: 83 --VWVMTFHSSCVRFLRRFIDRIGFDNSFTIYDSDDQRTLMKKIFKE 127 >gi|188995178|ref|YP_001929430.1| ATP-dependent DNA helicase [Porphyromonas gingivalis ATCC 33277] gi|188594858|dbj|BAG33833.1| ATP-dependent DNA helicase [Porphyromonas gingivalis ATCC 33277] Length = 765 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 59/163 (36%), Gaps = 39/163 (23%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 D +S Q A A V A AGSGKT +LV ++L L+ + P+ L+ LT T Sbjct: 4 DYLSSLNDSQKAAVLYNDGPALVIAGAGSGKTRVLVYKLLHLIRSGYDPARLMALTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV I T +++ Sbjct: 64 AAKEMKERVASEIGP--------------------------------------TAYRIQM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I+++ + T F+I D +K L+ K Sbjct: 86 GTFHSVFSRILRENAIHLGYTRDFSIYDTNDTKSLLRHVMKRM 128 >gi|19746195|ref|NP_607331.1| DNA helicase II [Streptococcus pyogenes MGAS8232] gi|19748377|gb|AAL97830.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes MGAS8232] Length = 772 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 84/232 (36%), Gaps = 52/232 (22%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ +++ + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLNGMNDRQAQAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R P D Sbjct: 59 TFTNKAAREMKER----------------------ALALNPATKDTL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + +D + Sbjct: 84 ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKQLNIDPKKWN 135 Query: 189 KKAFYEIL-----EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 +++ + ++ +++ E +D+ S A + + L R + ++ Sbjct: 136 ERSILGTISNAKNDLLDEKGYEAQAADMYSQIVA-RCYKAYQEELRRSEALD 186 >gi|294085888|ref|YP_003552648.1| DNA helicase II [Candidatus Puniceispirillum marinum IMCC1322] gi|292665463|gb|ADE40564.1| DNA helicase II [Candidatus Puniceispirillum marinum IMCC1322] Length = 743 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 69/201 (34%), Gaps = 43/201 (21%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63 N ++ + L S+ + V + AG+GKT +L R+ L+ + A P Sbjct: 3 NDLNQNPVSPWLAGLNTSQSDAVTSLQGPLLVLSGAGTGKTRVLTSRLAELVASGTAKPW 62 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L +T T AA EM R+ +++ Sbjct: 63 NILAVTFTNKAAREMKSRIGDMVGPMVE-------------------------------- 90 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 + + T H+ ++++ + S F I D + +L+++ +A+ +D Sbjct: 91 ------QVWLGTFHSLAAKMLRRHADLVGLKSDFTILDSDDQVRLVKQ----LMAAENID 140 Query: 184 NNEELKKAFYEILEISNDEDI 204 + ++ D + Sbjct: 141 PKRWPARMVAGVISRWKDRGL 161 >gi|94994523|ref|YP_602621.1| DNA helicase II [Streptococcus pyogenes MGAS10750] gi|94548031|gb|ABF38077.1| DNA helicase II [Streptococcus pyogenes MGAS10750] Length = 772 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 86/232 (37%), Gaps = 52/232 (22%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ +++ + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLNGMNDRQAQAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R L + P D Sbjct: 59 TFTNKAAREMKERALSL----------------------NPATKDTL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + +D + Sbjct: 84 ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKQLNIDPKKWN 135 Query: 189 KKAFYEIL-----EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 +++ + ++ +++ E +D+ S A + + L R + ++ Sbjct: 136 ERSILGTISNAKNDLLDEKGYEAQAADMYSQIVA-RCYKAYQEELRRSEALD 186 >gi|282882802|ref|ZP_06291407.1| ATP-dependent DNA helicase PcrA [Peptoniphilus lacrimalis 315-B] gi|281297213|gb|EFA89704.1| ATP-dependent DNA helicase PcrA [Peptoniphilus lacrimalis 315-B] Length = 720 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 40/163 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 ID ++ + E LL ++ + A AGSGKT ++ ++ L+ +L +T T Sbjct: 3 IDSLNDKQKEALLYNE--GPLLILAGAGSGKTKVVTSKIAYLIENEVPSWRILAITFTNK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +I E + + Sbjct: 61 AAREMRERVAMLID--------------------------------------EDVSPMWI 82 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA C I+++ S++ I D +I+E+ K Sbjct: 83 GTFHAICVRILRKNIENLGYGSNYNIYDRADQNTIIKESYKEL 125 >gi|224372404|ref|YP_002606776.1| putative recombination protein RecB [Nautilia profundicola AmH] gi|223588940|gb|ACM92676.1| helicase [Nautilia profundicola AmH] Length = 878 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 48/206 (23%), Positives = 81/206 (39%), Gaps = 30/206 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R L LL +PS++L +T T AA EM RV++ + + Sbjct: 7 LKASAGSGKTFSLALRYLALLFRGVNPSSILAVTFTNKAANEMKERVIKFLDLLKEDEEL 66 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + T + K + K +L L + + TI AF + ++++F + Sbjct: 67 LEILCGTSGLNE---KEILKKREFVLKEFL--TSDIHITTIDAFIQKVLRKFGYYVGVDV 121 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215 F I + L+ F ++E ++++ +LI Sbjct: 122 DFDIKSDN------------------------LENIFELLIESLDNKEFNSLIEFAKIEN 157 Query: 216 TALKLIFFFFSYLWRRKIIEKSLWSI 241 K I F L+ K E S W + Sbjct: 158 KKSKSIVELFEMLY-EKEKELSKWKM 182 >gi|170016834|ref|YP_001727753.1| ATP-dependent DNA helicase PcrA [Leuconostoc citreum KM20] gi|169803691|gb|ACA82309.1| ATP-dependent DNA helicase PcrA [Leuconostoc citreum KM20] Length = 749 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 50/158 (31%), Gaps = 38/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 + + A AGSGKT +L R+ L+ N P +L +T T AA EM Sbjct: 11 NNKQAEAVQTTEGPLLIMAGAGSGKTRVLTHRIAHLVQDLNVFPWRILAITFTNKAAREM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +++ + + V T HA Sbjct: 71 RERIAALLSE-------------------------------------DVARDIWVSTFHA 93 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 I+++ + +F I D + L++ Sbjct: 94 LAVRILRRDGEAIGLAKNFTIIDTSAQRTLMKRVINDL 131 >gi|18309405|ref|NP_561339.1| ATP-dependent DNA helicase [Clostridium perfringens str. 13] gi|18144081|dbj|BAB80129.1| probable ATP-dependent DNA helicase [Clostridium perfringens str. 13] Length = 870 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 49/212 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74 +I+ + +Q + ++ + + A+AG+GKT+ L +RV ++ PS +LC+T T A Sbjct: 1 MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAERVTSIIKNGNSKPSEILCITFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 EMS RV++I+ + + ++ Sbjct: 61 CKEMSDRVMKIVGGEAK--------------------------------------DITIR 82 Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK--- 190 T H+FC +++ + +I S F I DE+ +++I + S ++ N +++K Sbjct: 83 TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQKVID 142 Query: 191 ------AFYEILEISNDEDIETLISDIISNRT 216 A E LE ++ +T+I +I R Sbjct: 143 FIKVERARIETLEDRVLDEYKTVIDEIFKFRE 174 >gi|323697750|ref|ZP_08109662.1| UvrD/REP helicase [Desulfovibrio sp. ND132] gi|323457682|gb|EGB13547.1| UvrD/REP helicase [Desulfovibrio desulfuricans ND132] Length = 718 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 77/213 (36%), Gaps = 43/213 (20%) Query: 13 TIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 +ID ++ Q A + V A AGSGKT +V R+ L+ P+ +L LT T Sbjct: 2 SIDFENELNDAQREAVTTTEGPVLVIAGAGSGKTRTIVYRLANLVQKGVDPAQILLLTFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + AA EM +++A +L L G Sbjct: 62 RKAAQEM-----------------------------------LARAETILGRPLHGTSG- 85 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 T H+F A +++ + F + D S+ + +E + + + KKA Sbjct: 86 --GTFHSFAYATLRRNAADIGFAGGFTLMDRADSENVCKEVRDEL--KLGKGDRSYPKKA 141 Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFF 224 +L++ + L + + R A L + Sbjct: 142 --TLLDMITKSRNKELTIEAVMEREAYHLSPYL 172 >gi|301163214|emb|CBW22764.1| putative helicase [Bacteroides fragilis 638R] Length = 1057 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 90/212 (42%), Gaps = 10/212 (4%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + Sbjct: 5 IVYKASAGSGKTFTLAVEYIKLLIRNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63 Query: 93 SDEILSAEITKIQGKKPNKSDMSK--ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 D A + +I + + D + A L +L +V+TI +F ++IM+ E Sbjct: 64 GDPDSDAYLKRIIAETGHSEDEIRTTAGIALGYMLHDYSRFRVETIDSFFQSIMRNLARE 123 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISD 210 ++ + I E + +++ +A S + + N + + ++ +D +SD Sbjct: 124 LELSPNLNI--ELNNVEVLSDAVDSMIEKL--GPNSPVLVWLLDYIDERIADDKRWNVSD 179 Query: 211 IISN--RTALKLIFFFFSYLWRRKIIEKSLWS 240 I + R + RR++ + ++ Sbjct: 180 EIKSFGRNIFDEGYIEKGDGLRRRLRDPNVIH 211 >gi|315222686|ref|ZP_07864575.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus F0211] gi|315188372|gb|EFU22098.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus F0211] Length = 777 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 76/207 (36%), Gaps = 46/207 (22%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 ++ + + ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L Sbjct: 16 KKMNPLLTGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNIL 73 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R + A Sbjct: 74 AITFTNKAAREMKERAYTLNPATEDCL--------------------------------- 100 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + T H+ C I+++ +F I D + + L+ K L ++ LD + Sbjct: 101 ------IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKTLNLDPKK 150 Query: 187 ELKKAFYEILEISNDEDIETLISDIIS 213 ++A + + ++ I+ + ++ Sbjct: 151 WNERAILGTISNAKNDLIDEVAYAALA 177 >gi|254446951|ref|ZP_05060418.1| exodeoxyribonuclease V, beta subunit [gamma proteobacterium HTCC5015] gi|198263090|gb|EDY87368.1| exodeoxyribonuclease V, beta subunit [gamma proteobacterium HTCC5015] Length = 1215 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 20/176 (11%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH-------------PSTLLCLTHTKAAAAEMSHR 81 + A+AG+GKT L LRL+L + P +L +T T+AA E+ R Sbjct: 10 LIEASAGTGKTFTLAGLYLRLVLGHGDSLQSADGHAQALRPQDILVMTFTEAATQELRER 69 Query: 82 VLEIIT----AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 + E + A+S + L +T + P++ S+ HLL + + TIH Sbjct: 70 IRERLAEAAEAFSGRLKDKLDPLLTTLLNDYPDEQH-SRCAHLLNAAAQDMDEAAITTIH 128 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 FC+ ++++ ++ S F ++ +E K L +++ S L + K F Sbjct: 129 GFCQRMLREHAFDSR--SLFNLSLQEDEKTLTDDSFLDYWRSFALPLEGDAFKEFE 182 >gi|50914312|ref|YP_060284.1| DNA helicase II [Streptococcus pyogenes MGAS10394] gi|94990600|ref|YP_598700.1| DNA helicase II [Streptococcus pyogenes MGAS10270] gi|50903386|gb|AAT87101.1| DNA helicase II [Streptococcus pyogenes MGAS10394] gi|94544108|gb|ABF34156.1| DNA helicase II [Streptococcus pyogenes MGAS10270] Length = 772 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 84/232 (36%), Gaps = 52/232 (22%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ +++ + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLNGMNDRQAQAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R P D Sbjct: 59 TFTNKAAREMKER----------------------ALALNPATKDTL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + +D + Sbjct: 84 ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKQLNIDPKKWN 135 Query: 189 KKAFYEIL-----EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 +++ + ++ +++ E +D+ S A + + L R + ++ Sbjct: 136 ERSILGTISNAKNDLLDEKGYEAQAADMYSQIVA-RCYKAYQEELRRSEALD 186 >gi|306827259|ref|ZP_07460546.1| ATP-dependent DNA helicase PcrA [Streptococcus pyogenes ATCC 10782] gi|304430406|gb|EFM33428.1| ATP-dependent DNA helicase PcrA [Streptococcus pyogenes ATCC 10782] Length = 772 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 86/232 (37%), Gaps = 52/232 (22%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ +++ + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLNGMNDRQAQAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R L + P D Sbjct: 59 TFTNKAAREMKERALSL----------------------NPATKDTL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + +D + Sbjct: 84 ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKQLNIDPKKWN 135 Query: 189 KKAFYEIL-----EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 +++ + ++ +++ E +D+ S A + + L R + ++ Sbjct: 136 ERSILGTISNAKNDLLDEKGYEAQAADMYSQIVA-RCYKAYQEELRRSEALD 186 >gi|257463715|ref|ZP_05628104.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D12] gi|317061259|ref|ZP_07925744.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D12] gi|313686935|gb|EFS23770.1| ATP-dependent DNA helicase pcrA [Fusobacterium sp. D12] Length = 717 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 71/193 (36%), Gaps = 45/193 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++ +++ + E A+ + A AGSGKT + R+ ++ +L +T T Sbjct: 3 LLERLNEKQRE--AAATIEGPLLILAGAGSGKTRTITYRIAHMIEELGIPAYLILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV+ +I + Sbjct: 61 NKAAKEMKERVISLIGEEAE--------------------------------------RA 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+F +++ + + ++F I D E K++I K+ + + L N + +K Sbjct: 83 TISTFHSFGVRLLRIYGNKLGYQANFTIYDVEDQKRII----KAIMKELNLQNTDLSEKK 138 Query: 192 FYEILEISNDEDI 204 ++ +E I Sbjct: 139 LASLISKLKEEGI 151 >gi|315613237|ref|ZP_07888147.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis ATCC 49296] gi|315314799|gb|EFU62841.1| ATP-dependent DNA helicase PcrA [Streptococcus sanguinis ATCC 49296] Length = 763 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 71/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ V A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLVMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R G P D Sbjct: 59 TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|160914774|ref|ZP_02076988.1| hypothetical protein EUBDOL_00781 [Eubacterium dolichum DSM 3991] gi|158433314|gb|EDP11603.1| hypothetical protein EUBDOL_00781 [Eubacterium dolichum DSM 3991] Length = 1080 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 81/204 (39%), Gaps = 31/204 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 + ++ ++ VSA+AGSGKT +L+ R++ L++ + + +T T+AA Sbjct: 12 MPKWNAQQKKAIETKQKNILVSASAGSGKTTVLIARLMDLVMKDHISIDEICAMTFTEAA 71 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ + + + + + L + Sbjct: 72 ANEMKKRLASELQKAYAAAQSMEE-------------------KAFITKQLTNLQTAHIS 112 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL--IEEAKKSTLASIMLDNNEELKKAF 192 TIH+FC +I+Q++ ++ IA+ + + ++A ++ E+ F Sbjct: 113 TIHSFCLSIIQKYYYIIGLSKK-RIANIMDNAAMTHYQDAA---MSQAFQRQYEQQDPIF 168 Query: 193 YEI-----LEISNDEDIETLISDI 211 E+ ND+ ++ I+ + Sbjct: 169 LELCMMFSSRPENDDMLQKTIAKL 192 >gi|187939873|gb|ACD39011.1| helicase-related protein [Pseudomonas aeruginosa] Length = 1126 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 41/214 (19%), Positives = 78/214 (36%), Gaps = 45/214 (21%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 QE S I + ++ A+ + + A G+GKT LV RV LL P +L Sbjct: 186 QEPSALEAEIPLNEEQRQAAAHRGNAFLLQAGPGTGKTRTLVARVENLLDEGVDPRRILL 245 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT + A+AEM+ R+ ++ R L L Sbjct: 246 LTFSNRASAEMAERI--------------------------------ARKRPLEAAAL-- 271 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE-EAKKSTLASI--MLDN 184 + T H F ++++F A++ + + D ++ +L+E E + L + D Sbjct: 272 ----WIGTFHRFGLDLLRRFHDLADLPADPRLMDRTEAVELLEYEFSRLGLEHYRDLYDP 327 Query: 185 NEELKKAFYEILEISND----EDIETLISDIISN 214 ++ + I ++ L ++ + Sbjct: 328 SQNISDILSAISRAKDEVVDARRYRELAQQMLDD 361 >gi|237738470|ref|ZP_04568951.1| ATP-dependent nuclease subunit A [Fusobacterium mortiferum ATCC 9817] gi|229420350|gb|EEO35397.1| ATP-dependent nuclease subunit A [Fusobacterium mortiferum ATCC 9817] Length = 1017 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 89/196 (45%), Gaps = 12/196 (6%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + + A+AG+GKT+ L + L+ +L +T TK A AE+ R+L+ + Sbjct: 2 GKKLILKASAGTGKTYRLSLEYIASLMVGIDFKDILVMTFTKKATAEIKERILKFLKEIC 61 Query: 91 HLSDEILSAEITKIQGKKPNKS-DMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF-P 148 ++ + E S ++SK + + I+E LK+ TI +F I ++ Sbjct: 62 ESEEKRVEIEKNLQNIYGDVFSFEISKVKKIYKNIVENKDKLKIYTIDSFTNTIFKKAIA 121 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET-- 206 I + I DEE+++K++ + N E F LE ++++D++ Sbjct: 122 PYLKI-YSYEIVDEEENRKILIRTFEKLFE------NREDFNLFKSFLEDNSEKDMDRYV 174 Query: 207 -LISDIISNRTALKLI 221 LI +II+ R + L+ Sbjct: 175 ELIRNIINQRWKMILL 190 >gi|104773602|ref|YP_618582.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422683|emb|CAI97296.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 753 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 39/168 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 SE L + V A AGSGKT +L +R+ L+ P +L + Sbjct: 1 MSEATILQGLNPQQVQAVKTTEGPLLVIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAI 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R ++++ + Sbjct: 61 TFTNKAAKEMKEREVKLLG--------------------------------------DQA 82 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T HA C I+++ F+IAD + L++ + Sbjct: 83 ESIWMSTFHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQL 130 >gi|92118249|ref|YP_577978.1| UvrD/REP helicase [Nitrobacter hamburgensis X14] gi|91801143|gb|ABE63518.1| ATP-dependent DNA helicase, Rep family [Nitrobacter hamburgensis X14] Length = 833 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 ++ EQ A + V A AG+GKT +L R+ +L A P +L +T T Sbjct: 34 YLAGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSQGRARPGEILSVTFTNK 93 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM HR+ +++ G + Sbjct: 94 AAREMKHRLGQMLGHAVE-------------------------------------GMPWL 116 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ I++ ++ S+F + D + +L+++ L + +D+ + Sbjct: 117 GTFHSIGGRILRVHAELVHLKSNFTVLDVDDQIRLLKQ----LLQADNIDDKRWPARMLA 172 Query: 194 EILEISNDEDI 204 +++ + + Sbjct: 173 GLIDGWKNRGL 183 >gi|313159744|gb|EFR59101.1| putative ATP-dependent helicase PcrA [Alistipes sp. HGB5] Length = 858 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 57/169 (33%), Gaps = 39/169 (23%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 + S + ++ +++ + + + A AGSGKT +L R+ ++ P +L Sbjct: 16 SKESPILQGLN--PAQRAAVVNYDAPSLIIAGAGSGKTRVLTSRIAYMIEQGVAPFNILA 73 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T AA +M R+ ++I Sbjct: 74 LTFTNKAAEQMRERIAQMIPD-------------------------------------NR 96 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 +++ T H+ I+++ F I + K L++ + Sbjct: 97 SRYIRMGTFHSVFSRILRENADRIGFPDSFTIYEPSDCKNLLKTIVREL 145 >gi|316933213|ref|YP_004108195.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1] gi|315600927|gb|ADU43462.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1] Length = 863 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 +S EQ A + V A AG+GKT +L R+ +L A P+ +L +T T Sbjct: 34 YLSGLNPEQRDAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNK 93 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ +++ G + Sbjct: 94 AAREMKLRLGQMLGQAVE-------------------------------------GMPWL 116 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ I++ +TS+F + D + +L+++ LA+ +D+ + Sbjct: 117 GTFHSIGGRILRYHAELVQLTSNFTVLDTDDQIRLLKQ----LLAADNIDDKRWPARMLA 172 Query: 194 EILEISNDEDI 204 +++ + + Sbjct: 173 GLIDGWKNRGL 183 >gi|251782494|ref|YP_002996796.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391123|dbj|BAH81582.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127381|gb|ADX24678.1| DNA helicase II [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 772 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 84/232 (36%), Gaps = 52/232 (22%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ +++ + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLNGMNDRQAQAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R P D Sbjct: 59 TFTNKAAREMKER----------------------ALALNPATKDTL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + +D + Sbjct: 84 ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKQLNIDPKKWN 135 Query: 189 KKAFYEIL-----EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 +++ + ++ +++ E +D+ S A + + L R + ++ Sbjct: 136 ERSILGTISNAKNDLLDEKGYEAQAADMYSQIVA-RCYKAYQEELRRSEALD 186 >gi|323347961|gb|EGA82220.1| Srs2p [Saccharomyces cerevisiae Lalvin QA23] Length = 1174 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 38/167 (22%) Query: 13 TIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 + L+SQ ++Q A+ D TR V A G+GKT +L RV L+L + HP ++ T Sbjct: 8 WLHLVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTT 67 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ E++ E+L Sbjct: 68 FTNKAANEMKERLQEMLRGAGVNISELL-------------------------------- 95 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+ +F ++ + I DE++ ++++ + Sbjct: 96 ---IGTFHSICLKILYRFGHLVDLQKDWRIIDEKEIDVILDDMIEKV 139 >gi|71903614|ref|YP_280417.1| DNA helicase II [Streptococcus pyogenes MGAS6180] gi|139473666|ref|YP_001128382.1| DNA helicase II [Streptococcus pyogenes str. Manfredo] gi|71802709|gb|AAX72062.1| DNA helicase II [Streptococcus pyogenes MGAS6180] gi|134271913|emb|CAM30151.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes str. Manfredo] Length = 772 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 86/232 (37%), Gaps = 52/232 (22%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ +++ + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLNGMNDRQAQAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R L + P D Sbjct: 59 TFTNKAAREMKERALSL----------------------NPATKDTL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + +D + Sbjct: 84 ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKQLNIDPKKWN 135 Query: 189 KKAFYEIL-----EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 +++ + ++ +++ E +D+ S A + + L R + ++ Sbjct: 136 ERSILGTISNAKNDLLDEKGYEAQAADMYSQIVA-RCYKAYQEELRRSEALD 186 >gi|269120962|ref|YP_003309139.1| UvrD/REP helicase [Sebaldella termitidis ATCC 33386] gi|268614840|gb|ACZ09208.1| UvrD/REP helicase [Sebaldella termitidis ATCC 33386] Length = 724 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D ++ K ++ A + A AGSGKT + R+ ++ P +L LT T Sbjct: 3 ILDGLN--KEQREAAEHIDGPVLILAGAGSGKTRTVTYRIAHMVREKGVSPLNILALTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R ++ L Sbjct: 61 NKAAKEMKERAEALVG--------------------------------------NDIHNL 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 ++ T H+F +++ + + +F I D + K LI + K Sbjct: 83 QISTFHSFSVRLLRIYGEKLGYGKNFNIYDTDDQKSLISKIMKEL 127 >gi|15675225|ref|NP_269399.1| DNA helicase II [Streptococcus pyogenes M1 GAS] gi|21910437|ref|NP_664705.1| DNA helicase II [Streptococcus pyogenes MGAS315] gi|28896013|ref|NP_802363.1| DNA helicase II [Streptococcus pyogenes SSI-1] gi|71910790|ref|YP_282340.1| DNA helicase II [Streptococcus pyogenes MGAS5005] gi|94988710|ref|YP_596811.1| DNA helicase II [Streptococcus pyogenes MGAS9429] gi|94992533|ref|YP_600632.1| DNA helicase II [Streptococcus pyogenes MGAS2096] gi|13622394|gb|AAK34120.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes M1 GAS] gi|21904635|gb|AAM79508.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes MGAS315] gi|28811263|dbj|BAC64196.1| putative ATP-dependent DNA helicase [Streptococcus pyogenes SSI-1] gi|71853572|gb|AAZ51595.1| DNA helicase II [Streptococcus pyogenes MGAS5005] gi|94542218|gb|ABF32267.1| DNA helicase II [Streptococcus pyogenes MGAS9429] gi|94546041|gb|ABF36088.1| DNA helicase II [Streptococcus pyogenes MGAS2096] Length = 772 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 84/232 (36%), Gaps = 52/232 (22%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ +++ + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLNGMNDRQAQAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R P D Sbjct: 59 TFTNKAAREMKER----------------------ALALNPATKDTL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + +D + Sbjct: 84 ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKQLNIDPKKWN 135 Query: 189 KKAFYEIL-----EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 +++ + ++ +++ E +D+ S A + + L R + ++ Sbjct: 136 ERSILGTISNAKNDLLDEKGYEAQAADMYSQIVA-RCYKAYQEELRRSEALD 186 >gi|293365526|ref|ZP_06612235.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037] gi|291315894|gb|EFE56338.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037] Length = 763 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 72/198 (36%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R G P D Sbjct: 59 TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 +++ + + ++ I+ Sbjct: 136 ERSILGTISNAKNDLIDD 153 >gi|119472177|ref|ZP_01614379.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Alteromonadales bacterium TW-7] gi|119445096|gb|EAW26390.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Alteromonadales bacterium TW-7] Length = 1188 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 14/172 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHP---------STLLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT+ + LR LL P +L +T T AA E+ RV Sbjct: 16 LIEASAGTGKTYTITGLYLRYLLGMQIPGELNAPLSVEQILVVTFTDAATQEIKDRVRNR 75 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 I A + I+G D +A LL ++ + TIH FC+ +++ Sbjct: 76 IIAARDALLGQTPND-ELIEGVIAAIGDKHRAFDLLDAAAKSMDEAAIFTIHGFCQRMLK 134 Query: 146 QFPLEANITSHFA-IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 Q E+ + + I DE ++ E K S + +E+ A ++ Sbjct: 135 QHAFESGVAFNLEFILDERD---ILLETIKDFWRSFVYPLSEDRTGAILDVF 183 >gi|116073017|ref|ZP_01470279.1| hypothetical protein RS9916_31242 [Synechococcus sp. RS9916] gi|116068322|gb|EAU74074.1| hypothetical protein RS9916_31242 [Synechococcus sp. RS9916] Length = 1222 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 8/151 (5%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSH 91 + A+AG+GKT L VLRLL +P LL +T T+AAAAE+ R+ + Sbjct: 19 LLEASAGTGKTFALAHLVLRLLSEGPNPLQVEQLLVVTFTEAAAAELRDRIARRLQQALA 78 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHL---LITILETPGGLKVQTIHAFCEAIMQQFP 148 L + + + + + R + L+ LE + TIH FC +Q+ Sbjct: 79 LLQGADADAMDRPLQEWITAQSQTLHRTMEGRLLLALERLDRADITTIHGFCRRTLQRQA 138 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 LEA + A++ E Q E+ Sbjct: 139 LEAGLGP--AVSLESQGHDRREQLVHDYWQQ 167 >gi|242045726|ref|XP_002460734.1| hypothetical protein SORBIDRAFT_02g034000 [Sorghum bicolor] gi|241924111|gb|EER97255.1| hypothetical protein SORBIDRAFT_02g034000 [Sorghum bicolor] Length = 1185 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 38/167 (22%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 +++ E + ++ + E +D + A GSGKT +V RVL LL PS +L Sbjct: 298 KKYYEYLHSLNDRQKEA-ACNDVAVPLMIVAGPGSGKTSTMVGRVLTLLKEGIPPSNILA 356 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAA+EM R+ ++ Sbjct: 357 MTFTTAAASEMRERIGTVVGKAVAKE---------------------------------- 382 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + + T H+FC + + + TS F I Q ++ + EA++ Sbjct: 383 ---IAISTFHSFCLQLCRTHAEKLGRTSEFIIYGHGQQRRAVIEAER 426 >gi|322379132|ref|ZP_08053529.1| Putative ATP-DEPENDENT HELICASE [Helicobacter suis HS1] gi|322380437|ref|ZP_08054639.1| ATP-dependent helicase [Helicobacter suis HS5] gi|321147148|gb|EFX41846.1| ATP-dependent helicase [Helicobacter suis HS5] gi|321148428|gb|EFX42931.1| Putative ATP-DEPENDENT HELICASE [Helicobacter suis HS1] Length = 900 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 12/147 (8%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + LL A P+T+L LT T AA+EM R+ + + S Sbjct: 11 LALKASAGSGKTFALTLRYIALLFEGAKPNTILTLTFTNKAASEMRERIYNTLASLHTES 70 Query: 94 D--EILSAEITKIQGKKPNKSDMSKARHLLITILE----------TPGGLKVQTIHAFCE 141 I + + K +L + + +QTI AF + Sbjct: 71 QIWARNKKYIPSDSKIQAILESLQKNYNLSWSQIAPKSEDVYTQFLKADPAIQTIDAFFQ 130 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKL 168 ++++F + S F +++ + KL Sbjct: 131 KVLRKFSYFVGVRSEFQVSNVSKEDKL 157 >gi|296393904|ref|YP_003658788.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985] gi|296181051|gb|ADG97957.1| UvrD/REP helicase [Segniliparus rotundus DSM 44985] Length = 789 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 53/159 (33%), Gaps = 40/159 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 + + A AGSGKT ++ +RV LL A P +L +T T AA E+ Sbjct: 12 NPQQAEAVVHLGAPLCIIAGAGSGKTSVITRRVAWLLAEGHARPGEILAITFTNKAAGEL 71 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ + V T H+ Sbjct: 72 KERVGALVGG--------------------------------------RMWEMWVSTFHS 93 Query: 139 FCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKST 176 C +++ +A +F I D + SK+L+ + Sbjct: 94 SCARLLRAEAGPQAGFDQNFTIYDADDSKRLLAMVAEEL 132 >gi|67624459|ref|XP_668512.1| helicase [Cryptosporidium hominis TU502] gi|54659721|gb|EAL38286.1| helicase-like protein nhl [Cryptosporidium hominis] Length = 916 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 19/208 (9%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 + ++ + ++ S + A G+GKT L R++R LL+ P +L LT T+ AA E+ Sbjct: 36 LEQKKAVFTNHESSLLIVAGPGTGKTATLTSRIVRFLLSGYSP--ILALTFTRKAANELK 93 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV + ++ S + ++ +K L + TP + + TIH+F Sbjct: 94 SRVSIVYSSSSKIIYSKSKQIKNDLRNEKS-----------LSDFVPTP-EIFIGTIHSF 141 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI--MLDNNEEL---KKAFYE 194 C +++++ + AI D+E + KL++ + + L N L F E Sbjct: 142 CWKLLKEYGSFIGLPKDIAIIDKELAIKLLKSCLSENSSKVTSQLSNYSPLIFDPANFDE 201 Query: 195 ILEISNDEDIETLISDIISNRTALKLIF 222 I D++I DI K ++ Sbjct: 202 IERDDFDDNICDQTHDIKGENEQCKNLY 229 >gi|86749146|ref|YP_485642.1| UvrD/REP helicase [Rhodopseudomonas palustris HaA2] gi|86572174|gb|ABD06731.1| ATP-dependent DNA helicase, Rep family [Rhodopseudomonas palustris HaA2] Length = 845 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 +S EQ A + V A AG+GKT +L R+ +L A P+ +L +T T Sbjct: 34 YLSGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNK 93 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ +++ G + Sbjct: 94 AAREMKLRLGQMLGQAVE-------------------------------------GMPWL 116 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ I++ +TS+F + D + +L+++ LA+ +D+ + Sbjct: 117 GTFHSIGGRILRYHAELVQLTSNFTVLDTDDQIRLLKQ----LLAADNIDDKRWPARMLA 172 Query: 194 EILEISNDEDI 204 +++ + + Sbjct: 173 GLIDGWKNRGL 183 >gi|289666094|ref|ZP_06487675.1| DNA-dependent helicase II [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 723 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHT 71 +D ++ + E + A P V A AGSGKT +L+ R+ L + + +T T Sbjct: 1 MLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFT 58 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM HR + S G+ Sbjct: 59 NKAAGEMRHRTDLQLRNGSR--------------------------------------GM 80 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H +++ +A + F + D + +L++ +S Sbjct: 81 WIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQSL 125 >gi|209559530|ref|YP_002286002.1| Putative ATP-dependent DNA helicase [Streptococcus pyogenes NZ131] gi|209540731|gb|ACI61307.1| Putative ATP-dependent DNA helicase [Streptococcus pyogenes NZ131] Length = 772 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 84/232 (36%), Gaps = 52/232 (22%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ +++ + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLNGMNDRQAQAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R P D Sbjct: 59 TFTNKAAREMKER----------------------ALALNPATKDTL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + +D + Sbjct: 84 ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKQLNIDPKKWN 135 Query: 189 KKAFYEIL-----EISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 +++ + ++ +++ E +D+ S A + + L R + ++ Sbjct: 136 ERSILGTISNAKNDLLDEKGYEAQAADMYSQIVA-RCYKAYQEELRRSEALD 186 >gi|190409409|gb|EDV12674.1| DNA helicase [Saccharomyces cerevisiae RM11-1a] gi|256271681|gb|EEU06720.1| Srs2p [Saccharomyces cerevisiae JAY291] gi|290771135|emb|CAY80687.2| Srs2p [Saccharomyces cerevisiae EC1118] Length = 1174 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 38/167 (22%) Query: 13 TIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 + L+SQ ++Q A+ D TR V A G+GKT +L RV L+L + HP ++ T Sbjct: 8 WLHLVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTT 67 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ E++ E+L Sbjct: 68 FTNKAANEMKERLQEMLRGAGVNISELL-------------------------------- 95 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+ +F ++ + I DE++ ++++ + Sbjct: 96 ---IGTFHSICLKILYRFGHLVDLQKDWRIIDEKEIDVILDDMIEKV 139 >gi|209884405|ref|YP_002288262.1| DNA helicase II [Oligotropha carboxidovorans OM5] gi|209872601|gb|ACI92397.1| DNA helicase II [Oligotropha carboxidovorans OM5] Length = 857 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 66/190 (34%), Gaps = 42/190 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L + ++ V A AG+GKT +L R+ +L A PS +L +T T A Sbjct: 35 LTALNPEQREAVETLDGPVLVLAGAGTGKTRVLTSRIAHILSEGRARPSEILSVTFTNKA 94 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ G + Sbjct: 95 AREMKQRLGVMLGQTVE-------------------------------------GMPWLG 117 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HA I++ A + S+F + D + +L+++ L + +D+ + Sbjct: 118 TFHAIAGRILRVHAELAQLKSNFTVLDVDDQIRLLKQ----LLQAEGIDDKRWPARMLAG 173 Query: 195 ILEISNDEDI 204 +++ + + Sbjct: 174 LIDGWKNRGL 183 >gi|288905388|ref|YP_003430610.1| ATP-dependent DNA helicase (DNA helicase II) [Streptococcus gallolyticus UCN34] gi|325978377|ref|YP_004288093.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732114|emb|CBI13679.1| Putative ATP-dependent DNA helicase (DNA helicase II) [Streptococcus gallolyticus UCN34] gi|325178305|emb|CBZ48349.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 771 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLNGMNDKQAEAVKTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R P +D Sbjct: 59 TFTNKAAREMRER----------------------AMALNPATADTL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L ++ LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++A + + ++ ++ Sbjct: 136 ERAILGTISNAKNDLLDE 153 >gi|313888327|ref|ZP_07821998.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845730|gb|EFR33120.1| putative ATP-dependent DNA helicase PcrA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 734 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 41/164 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72 I+ ++ + E LLA++ + A AGSGKT ++ ++ L+ PS +L +T T Sbjct: 3 INTLNDKQKEALLATE--GPLLILAGAGSGKTKVVTSKIAYLIEELQVPSWKILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++I E + Sbjct: 61 KAANEMRDRVSKLID--------------------------------------EDISSMW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ + +S F I D + +++EA Sbjct: 83 IGTFHSICVRILRKNIDKIGYSSSFTIYDRDDQLTVVKEAIGEL 126 >gi|6322369|ref|NP_012443.1| Srs2p [Saccharomyces cerevisiae S288c] gi|83305803|sp|P12954|SRS2_YEAST RecName: Full=ATP-dependent DNA helicase SRS2 gi|4277|emb|CAA33706.1| helicase [Saccharomyces cerevisiae] gi|521096|emb|CAA54361.1| RADH [Saccharomyces cerevisiae] gi|1008264|emb|CAA89385.1| HPR5 [Saccharomyces cerevisiae] gi|285812810|tpg|DAA08708.1| TPA: Srs2p [Saccharomyces cerevisiae S288c] Length = 1174 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 38/167 (22%) Query: 13 TIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 + L+SQ ++Q A+ D TR V A G+GKT +L RV L+L + HP ++ T Sbjct: 8 WLHLVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTT 67 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ E++ E+L Sbjct: 68 FTNKAANEMKERLQEMLRGAGVNISELL-------------------------------- 95 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+ +F ++ + I DE++ ++++ + Sbjct: 96 ---IGTFHSICLKILYRFGHLVDLQKDWRIIDEKEIDVILDDMIEKV 139 >gi|319955254|ref|YP_004166521.1| uvrd/rep helicase [Cellulophaga algicola DSM 14237] gi|319423914|gb|ADV51023.1| UvrD/REP helicase [Cellulophaga algicola DSM 14237] Length = 794 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 78/215 (36%), Gaps = 47/215 (21%) Query: 16 LISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 I+Q Q V A AGSGKT +L R+ L+ +L LT T A Sbjct: 22 YINQLNDAQRAPVLHKDGPLIVIAGAGSGKTRVLTYRIAYLMSLGIDSFNILALTFTNKA 81 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ I+ ++A++L++ Sbjct: 82 AREMKARIAAIVGN--------------------------AEAKNLMM-----------G 104 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL------ 188 T H+ I++ + S+F I D + S++LI K + +++ Sbjct: 105 TFHSVFARILRYDGDKLGYPSNFTIYDTQDSQRLIASIIKEMGLDKDVYKYKQVQNRISS 164 Query: 189 -KKAFYEILEISNDEDIETLISDIISNRTALKLIF 222 K + + ND +++ +D ++ R + I+ Sbjct: 165 YKNSLITVRAYFNDAELQE--ADAMAKRPRMGDIY 197 >gi|221369980|ref|YP_002521076.1| ATP-dependent DNA helicase [Rhodobacter sphaeroides KD131] gi|221163032|gb|ACM04003.1| ATP-dependent DNA helicase [Rhodobacter sphaeroides KD131] Length = 679 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 55/165 (33%), Gaps = 38/165 (23%) Query: 16 LISQTKSEQLLASD-------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 + + Q A + P V A AGSGKT L RV LL+ A P +L + Sbjct: 3 YLERLNERQRQAVEFGVSGTQPAPPLLVIAGAGSGKTSTLAHRVAHLLVKGADPRRILLM 62 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T ++ AAAE++ RV I RH L Sbjct: 63 TFSRRAAAELTRRVERIT-------------------------------RHALGQAHAAE 91 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T H I+++ + F I D E S L+ + Sbjct: 92 ALTWAGTFHGIGARILRENAALIGLNPDFTIHDREDSADLMNLVR 136 >gi|327314682|ref|YP_004330119.1| UvrD/REP helicase [Prevotella denticola F0289] gi|326944136|gb|AEA20021.1| UvrD/REP helicase [Prevotella denticola F0289] Length = 1094 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 6/168 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95 A+AGSGKT L + L++ N +L +T T A EM R+L + +H L D Sbjct: 10 ASAGSGKTFTLASEYITLVVKNPQDYKKILAVTFTNKATQEMKIRILSQLYGIAHHLPDS 69 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + + A L + +VQTI AF +++++ E N+T+ Sbjct: 70 QAYFDQVVRKTGFQETVIRENAAEALSLLTHHYNEFRVQTIDAFFQSVLRNLARELNLTA 129 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + I + + +A + S+ + EE+ K + ++ + ++D Sbjct: 130 NLRIDLNDDQVE--AQAVDEMIDSL--EEGEEVLKWIRDYIDKNIEDD 173 >gi|319745133|gb|EFV97457.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae ATCC 13813] Length = 766 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 58/169 (34%), Gaps = 42/169 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E + I ++ ++E + +D + A AGSGKT +L R+ L+ +P +L Sbjct: 7 EMNPLIIGMNDKQAEAVQTTD--GPLLIMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILA 64 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R P D Sbjct: 65 ITFTNKAAREMRER----------------------AIALNPATQDTL------------ 90 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ +F I D + + L++ K Sbjct: 91 -----IATFHSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQL 134 >gi|323354422|gb|EGA86261.1| Srs2p [Saccharomyces cerevisiae VL3] Length = 1143 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 38/167 (22%) Query: 13 TIDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 + L+SQ ++Q A+ D TR V A G+GKT +L RV L+L + HP ++ T Sbjct: 8 WLHLVSQLNTQQRAAALFDYTRGLQVIAGPGTGKTKVLTSRVAYLILHHHIHPRDIIVTT 67 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ E++ E+L Sbjct: 68 FTNKAANEMKERLQEMLRGAGVNISELL-------------------------------- 95 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+ +F ++ + I DE++ ++++ + Sbjct: 96 ---IGTFHSICLKILYRFGHLVDLQKDWRIIDEKEIDVILDDMIEKV 139 >gi|313675649|ref|YP_004053645.1| uvrd/rep helicase [Marivirga tractuosa DSM 4126] gi|312942347|gb|ADR21537.1| UvrD/REP helicase [Marivirga tractuosa DSM 4126] Length = 1084 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 45/201 (22%), Positives = 79/201 (39%), Gaps = 7/201 (3%) Query: 39 NAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97 +AGSGKT L + L+L N H +L +T T A EM R+++ + +S + + Sbjct: 13 SAGSGKTFTLTREYLKLAFQNPDHFKKILAVTFTNKATQEMKERIIQNLFDFSRKTPSDM 72 Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157 ++ I + K++ LL++IL VQTI F + +M+ F E ++ Sbjct: 73 GEQLKSILDLT-DTELKEKSQKLLVSILHNYSRFSVQTIDRFFQNVMRSFARELSLQGDG 131 Query: 158 AIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEI-LEISNDEDIETLISDIISNR 215 + + +A + + D LK + + D+ + DI+S Sbjct: 132 ELLLNTDE---VRQAVLDLMMEDISDPKHVALKNWIIDFSVNKLEDKGKWDVRKDILSFT 188 Query: 216 TALKLIFFFFSYLWRRKIIEK 236 L F K I Sbjct: 189 EELMKDDFKVIEDALDKEISD 209 >gi|15678500|ref|NP_275615.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta H] gi|2621541|gb|AAB84978.1| DNA helicase II [Methanothermobacter thermautotrophicus str. Delta H] Length = 916 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 44/182 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78 T+ +++ V A G+GKT +LV+RV L+ P +L +T T+ AA E+ Sbjct: 13 TEKQKMAVKKTEGPLVVVAGPGAGKTRVLVERVAYLVKRKGVSPENILVITFTEKAAGEL 72 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R++ + + L +++ TIH+ Sbjct: 73 KARLINCVGLDAEL--------------------------------------MQISTIHS 94 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC ++ P E + F I DEE + ++ I LD ++ + + +E Sbjct: 95 FCSKVLSDHPEEHEFGAGFEILDEESQLIFL----RTVFYKIGLDRYMKMGE-VHRAIEF 149 Query: 199 SN 200 N Sbjct: 150 FN 151 >gi|169824301|ref|YP_001691912.1| putative ATP-dependent exonuclease [Finegoldia magna ATCC 29328] gi|167831106|dbj|BAG08022.1| putative ATP-dependent exonuclease [Finegoldia magna ATCC 29328] Length = 967 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 68/164 (41%), Gaps = 36/164 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +I +++++L S ++ V+A AG+GKT ++ +R + +++C+T T AA Sbjct: 1 MIKFSENQKLAYSTINQNVCVNAGAGTGKTEVVSERFRYMYEKGIDIKSIVCITFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+++ + + D + V T Sbjct: 61 DEMKDRIIQKLNNPRLIDD------------------------------------INVST 84 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 I +FC+ I+ +I F I +++Q+ KL+ E L + Sbjct: 85 ISSFCKKIVSDNSYYLSIDPSFQIIEDDQANKLLNEIFDKILEN 128 >gi|160914437|ref|ZP_02076652.1| hypothetical protein EUBDOL_00441 [Eubacterium dolichum DSM 3991] gi|158433595|gb|EDP11884.1| hypothetical protein EUBDOL_00441 [Eubacterium dolichum DSM 3991] Length = 729 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 39/147 (26%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 R + A AGSGKT ++ R+ L+ + +P+ +L +T T AA EM RV + Sbjct: 19 DRHLRIIAGAGSGKTRVVTTRIAYLIEQCHIYPNKILAITFTNKAAREMKERVEGFLG-- 76 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 +T + + TIH+FC ++++ L Sbjct: 77 ------------------------------------DTAQAVMISTIHSFCVRLLREDIL 100 Query: 150 EANITSHFAIADEEQSKKLIEEAKKST 176 +F I D + + ++ +A K Sbjct: 101 VHGYPRNFTILDADDQRSILRDAYKQL 127 >gi|116490506|ref|YP_810050.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni PSU-1] gi|290889906|ref|ZP_06552993.1| hypothetical protein AWRIB429_0383 [Oenococcus oeni AWRIB429] gi|116091231|gb|ABJ56385.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni PSU-1] gi|290480516|gb|EFD89153.1| hypothetical protein AWRIB429_0383 [Oenococcus oeni AWRIB429] Length = 748 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 72/193 (37%), Gaps = 45/193 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 ++ + ++ + E +L ++ + A AGSGKT +L RV L+ + P ++L + Sbjct: 1 MNDLLTGLNDKQKEAVLTTE--GPLLIMAGAGSGKTRVLTHRVAYLVKEKHVDPWSILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R+ ++ E Sbjct: 59 TFTNKAAREMKERIAGLVDE-------------------------------------EDA 81 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-E 187 + V T HA I+++ + T+ F+I D + L+ K L + D+N+ + Sbjct: 82 RSIWVSTFHALSARILRRDVDKIGFTTSFSILDSSGQRTLM----KHVLNDLNYDSNQYD 137 Query: 188 LKKAFYEILEISN 200 K I N Sbjct: 138 PKSILASISNFKN 150 >gi|186475566|ref|YP_001857036.1| UvrD/REP helicase [Burkholderia phymatum STM815] gi|184192025|gb|ACC69990.1| UvrD/REP helicase [Burkholderia phymatum STM815] Length = 750 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 35/165 (21%) Query: 17 ISQTKSEQL-----LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 ++ + E + + P+ + V A AGSGKT+ L RV L++ P +L LT + Sbjct: 51 LNDAQREAVEYGADRVAHPSGALLVIAGAGSGKTNTLAHRVANLVVKGVDPRRILLLTFS 110 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + AA EM+ RV I + + L+ +T Sbjct: 111 RRAALEMTRRVT-RIAGMALGTRGALAQGLT----------------------------- 140 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ +++++ ++ F I D E S L+ + Sbjct: 141 WSGTFHSVGARLLREYADLIGLSPSFTINDREDSADLLNLVRHEL 185 >gi|116513593|ref|YP_812499.1| superfamily I DNA/RNA helicase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092908|gb|ABJ58061.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 753 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 39/168 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 SE L + V A AGSGKT +L +R+ L+ P +L + Sbjct: 1 MSEATILQGLNPQQVQAVKTTEGPLLVIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAI 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R ++++ + Sbjct: 61 TFTNKAAKEMKEREVKLLG--------------------------------------DQA 82 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T HA C I+++ F+IAD + L++ + Sbjct: 83 ESIWMSTFHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQL 130 >gi|325125238|gb|ADY84568.1| ATP-dependent helicase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 753 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 39/168 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 SE L + V A AGSGKT +L +R+ L+ P +L + Sbjct: 1 MSEATILQGLNPQQVQAVKTTEGPLLVIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAI 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R ++++ + Sbjct: 61 TFTNKAAKEMKEREVKLLG--------------------------------------DQA 82 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T HA C I+++ F+IAD + L++ + Sbjct: 83 ESIWMSTFHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQL 130 >gi|313123176|ref|YP_004033435.1| ATP-dependent DNA helicase pcra [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279739|gb|ADQ60458.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 753 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 39/168 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 SE L + V A AGSGKT +L +R+ L+ P +L + Sbjct: 1 MSEATILQGLNPQQVQAVKTTEGPLLVIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAI 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R ++++ + Sbjct: 61 TFTNKAAKEMKEREVKLLG--------------------------------------DQA 82 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T HA C I+++ F+IAD + L++ + Sbjct: 83 ESIWMSTFHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQL 130 >gi|295396697|ref|ZP_06806843.1| ATP-dependent DNA helicase PcrA [Brevibacterium mcbrellneri ATCC 49030] gi|294970443|gb|EFG46372.1| ATP-dependent DNA helicase PcrA [Brevibacterium mcbrellneri ATCC 49030] Length = 769 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 43/169 (25%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E ++ ++ + + ++ S + + A AGSGKT +L +R+ +L AHP +L Sbjct: 24 HQDELLEGLNPQQRQAVMHS--GSALLIVAGAGSGKTTVLTRRIAHILATGQAHPGQILA 81 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV ++ +AR Sbjct: 82 ITFTNKAAREMLDRVTSLVG---------------------------ERAR--------- 105 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G+ + T H+ C I+++ + TS+F+I D + S +LI + K Sbjct: 106 --GMWISTFHSACVRILRREAR--DRTSNFSIYDAQDSLRLITQVTKEL 150 >gi|192292387|ref|YP_001992992.1| UvrD/REP helicase [Rhodopseudomonas palustris TIE-1] gi|192286136|gb|ACF02517.1| UvrD/REP helicase [Rhodopseudomonas palustris TIE-1] Length = 848 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 +S EQ A + V A AG+GKT +L R+ +L A P+ +L +T T Sbjct: 34 YLSGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNK 93 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ +++ G + Sbjct: 94 AAREMKLRLGQMLGQAVE-------------------------------------GMPWL 116 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ I++ +TS+F + D + +L+++ LA+ +D+ + Sbjct: 117 GTFHSIGGRILRYHAELVQLTSNFTVLDTDDQIRLLKQ----LLAADNIDDKRWPARMLA 172 Query: 194 EILEISNDEDI 204 +++ + + Sbjct: 173 GLIDGWKNRGL 183 >gi|300813139|ref|ZP_07093516.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495893|gb|EFK31038.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 753 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 39/168 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 SE L + V A AGSGKT +L +R+ L+ P +L + Sbjct: 1 MSEATILQGLNPQQVQAVKTTEGPLLVIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAI 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R ++++ + Sbjct: 61 TFTNKAAKEMKEREVKLLG--------------------------------------DQA 82 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T HA C I+++ F+IAD + L++ + Sbjct: 83 ESIWMSTFHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQL 130 >gi|213962690|ref|ZP_03390951.1| ATP-dependent DNA helicase PcrA [Capnocytophaga sputigena Capno] gi|213954685|gb|EEB66006.1| ATP-dependent DNA helicase PcrA [Capnocytophaga sputigena Capno] Length = 783 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 75/218 (34%), Gaps = 49/218 (22%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 +L ++ V A AGSGKT +L R+ L+ +L LT T A Sbjct: 7 ELNRLNAPQRAAVLQKEGPIIVIAGAGSGKTRVLTYRIANLMRQGVDAFHILALTFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ +I+ + L + Sbjct: 67 ANEMKKRIADIVGNSEAKN-------------------------------------LWMG 89 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ I++ + +F I D + S++LI K +EL K Y+ Sbjct: 90 TFHSVFAKILRFEADKLGYPQNFTIYDTQDSQRLINGIIKE----------KELDKDVYK 139 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRK 232 +I + I +L +++I+ R + R++ Sbjct: 140 YKQIQ--QRISSLKNNLITVRAYFNNPELVENDAIRKQ 175 >gi|39936568|ref|NP_948844.1| UvrD/REP helicase [Rhodopseudomonas palustris CGA009] gi|39650424|emb|CAE28947.1| DNA helicase II [Rhodopseudomonas palustris CGA009] Length = 848 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 +S EQ A + V A AG+GKT +L R+ +L A P+ +L +T T Sbjct: 34 YLSGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNK 93 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ +++ G + Sbjct: 94 AAREMKLRLGQMLGQAVE-------------------------------------GMPWL 116 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ I++ +TS+F + D + +L+++ LA+ +D+ + Sbjct: 117 GTFHSIGGRILRYHAELVQLTSNFTVLDTDDQIRLLKQ----LLAADNIDDKRWPARMLA 172 Query: 194 EILEISNDEDI 204 +++ + + Sbjct: 173 GLIDGWKNRGL 183 >gi|325684643|gb|EGD26798.1| ATP-dependent DNA helicase PcrA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 753 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 55/168 (32%), Gaps = 39/168 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 SE L + V A AGSGKT +L +R+ L+ P +L + Sbjct: 1 MSEATILQGLNPQQVQAVKTTEGPLLVIAGAGSGKTSVLTRRIAYLVEEKRVAPWNILAI 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R ++++ + Sbjct: 61 TFTNKAAKEMKEREVKLLG--------------------------------------DQA 82 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T HA C I+++ F+IAD + L++ + Sbjct: 83 ESIWMSTFHALCVRILRRDGHLIGYDRDFSIADPSEQVTLVKRILRQL 130 >gi|225023801|ref|ZP_03712993.1| hypothetical protein EIKCOROL_00666 [Eikenella corrodens ATCC 23834] gi|224943456|gb|EEG24665.1| hypothetical protein EIKCOROL_00666 [Eikenella corrodens ATCC 23834] Length = 720 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 72/210 (34%), Gaps = 45/210 (21%) Query: 21 KSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 +EQL A P +SA V A AGSGKT +L R+ LL + A +++ +T T AA EM Sbjct: 2 NNEQLSAVTWPAQSALVLAGAGSGKTKVLTTRIAWLLHSGQASLHSVMAVTFTNKAAKEM 61 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ ++ + + T H Sbjct: 62 RARLEAMLP--------------------------------------LNIRAMWLGTFHG 83 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++ EA + + F I D L K L ++ + +A + Sbjct: 84 LCHRFLRLHHKEAGLPAAFQILDSSDQLAL----VKRLLKALNISEEIIAPRALQGFINA 139 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYL 228 + + + SN +LI + Y Sbjct: 140 QKEAGLRAAVLHA-SNPFEQRLIECYAEYD 168 >gi|160947380|ref|ZP_02094547.1| hypothetical protein PEPMIC_01314 [Parvimonas micra ATCC 33270] gi|158446514|gb|EDP23509.1| hypothetical protein PEPMIC_01314 [Parvimonas micra ATCC 33270] Length = 750 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 70/193 (36%), Gaps = 42/193 (21%) Query: 14 IDLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL+ ++QL A + S V A AGSGKT +L ++ +L N +L +T T Sbjct: 1 MDLLKGLNNKQLEAVEHFGSPLLVLAGAGSGKTKVLTTKIAYAVLEKNVSEYEILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 A EM R+ I + Sbjct: 61 NKAGKEMKERIENIFKR--------------------------------------DISSM 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C I++ + +++F I D + K +++E K L E K A Sbjct: 83 WIGTFHSICSKILRFNIEKIGYSNNFTIYDRDDQKLVLKEIFKQNLT--WESVLGEFKNA 140 Query: 192 FYEILEISNDEDI 204 I+ + +++ Sbjct: 141 IIGIISDAKGKNV 153 >gi|118587527|ref|ZP_01544951.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni ATCC BAA-1163] gi|118431978|gb|EAV38720.1| ATP-dependent DNA helicase PcrA [Oenococcus oeni ATCC BAA-1163] Length = 748 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 72/193 (37%), Gaps = 45/193 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 ++ + ++ + E +L ++ + A AGSGKT +L RV L+ + P ++L + Sbjct: 1 MNDLLTGLNDKQKEAVLTTE--GPLLIMAGAGSGKTRVLTHRVAYLVKEKHVDPWSILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R+ ++ E Sbjct: 59 TFTNKAAREMKERIAGLVDE-------------------------------------EDA 81 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-E 187 + V T HA I+++ + T+ F+I D + L+ K L + D+N+ + Sbjct: 82 RSIWVSTFHALSARILRRDVDKIGFTTSFSILDSSGQRTLM----KHVLNDLNYDSNQYD 137 Query: 188 LKKAFYEILEISN 200 K I N Sbjct: 138 PKSILASISNFKN 150 >gi|304440549|ref|ZP_07400436.1| ATP-dependent DNA helicase PcrA [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371027|gb|EFM24646.1| ATP-dependent DNA helicase PcrA [Peptoniphilus duerdenii ATCC BAA-1640] Length = 729 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 80/227 (35%), Gaps = 45/227 (19%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 ++ ++ + E + V A AGSGKT ++ +++ L+ +PS +L +T Sbjct: 1 MNLLEGLNDRQRE--AVTTTEGPVLVLAGAGSGKTSVVTKKIAYLMEEKKVYPSKILAIT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV ++ T Sbjct: 59 FTNKAANEMKTRVE---------------------------------------RLIHTDF 79 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + + T H+ I+++ +F I D + + ++++ K S ++ Sbjct: 80 NMWIGTFHSIAVRILRRDIDRLGYDRNFTIYDTKDQQTVVKDIIKRMDLSADSYKPRTIQ 139 Query: 190 KAFYEILEISNDEDIETLISD-IISNRTALKLIFFFFSYLWRRKIIE 235 I +E ++S+ I S R ++ + + L + ++ Sbjct: 140 AKISSIKNSGG--RVEDVLSESIYSERITKEIYYEYEKELKKNNALD 184 >gi|260584785|ref|ZP_05852530.1| ATP-dependent DNA helicase PcrA [Granulicatella elegans ATCC 700633] gi|260157442|gb|EEW92513.1| ATP-dependent DNA helicase PcrA [Granulicatella elegans ATCC 700633] Length = 755 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 66/191 (34%), Gaps = 45/191 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 ++ + A AGSGKT +L R+ +L HP +L +T T AA EM Sbjct: 2 NDRQKEAVQHTQGPLLIMAGAGSGKTRVLTHRMAYILAEEEVHPWNILAITFTNKAAREM 61 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + + V T H+ Sbjct: 62 KERVSQLVGPQAE--------------------------------------DMWVSTFHS 83 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILE 197 C I+++ F I D + + A K L + +D+ + + + I + Sbjct: 84 MCVRILRRDIELLGYQRSFTICDPSEQ----QTAMKRILKKLDIDSEKYDYRMILNRISQ 139 Query: 198 ISND-EDIETL 207 ND ED+E Sbjct: 140 AKNDLEDVEEF 150 >gi|220907711|ref|YP_002483022.1| UvrD/REP helicase [Cyanothece sp. PCC 7425] gi|219864322|gb|ACL44661.1| UvrD/REP helicase [Cyanothece sp. PCC 7425] Length = 829 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 45/188 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 + ++ + + + V A GSGKT +L +RVLR + + P +LCLT T AA EMS Sbjct: 6 NQEQESIINHIQGALLVLAPVGSGKTWVLSERVLRAVNSGIPPQQILCLTFTNRAAQEMS 65 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + E L ++T H Sbjct: 66 DRLRAYLP--------------------------------------EQANQLTIKTFHGL 87 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C +++ +A + + F+I DE K+L++E T ++L+K F ++ Sbjct: 88 CAWMLRLEGQQAGLAADFSIYDENDCKELLKEISGRT-------KPQDLQKLFAALIACK 140 Query: 200 NDEDIETL 207 + L Sbjct: 141 TEATPAQL 148 >gi|325923795|ref|ZP_08185410.1| ATP-dependent DNA helicase UvrD [Xanthomonas gardneri ATCC 19865] gi|325545728|gb|EGD16967.1| ATP-dependent DNA helicase UvrD [Xanthomonas gardneri ATCC 19865] Length = 723 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHT 71 +D ++ + E + A P V A AGSGKT +L+ R+ L + + +T T Sbjct: 1 MLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFT 58 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM HR + S G+ Sbjct: 59 NKAAGEMRHRTDLQLRNGSR--------------------------------------GM 80 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H +++ +A + F + D + +L++ +S Sbjct: 81 WIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQSL 125 >gi|189423552|ref|YP_001950729.1| UvrD/REP helicase [Geobacter lovleyi SZ] gi|189419811|gb|ACD94209.1| UvrD/REP helicase [Geobacter lovleyi SZ] Length = 736 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 41/165 (24%) Query: 14 IDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL++ + ++ + A AGSGKT ++ R++ L+ P +L +T T Sbjct: 1 MDLLAHLNTPQKQAVLHTEGPLLILAGAGSGKTRVITHRIVHLIREHGIRPWNILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM+ RV ++ + Sbjct: 61 NKAAKEMAERVRHLLGSHDTPL-------------------------------------- 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T HA C I++Q + S FAI D++ S++L+++ K Sbjct: 83 -IATFHATCGRILRQDIHQLGYESSFAIYDDKDSERLLKDLIKEL 126 >gi|238796709|ref|ZP_04640215.1| UvrD/REP helicase [Yersinia mollaretii ATCC 43969] gi|238719440|gb|EEQ11250.1| UvrD/REP helicase [Yersinia mollaretii ATCC 43969] Length = 1136 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 38/151 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 ++ A+ + + A G+GKT LV RV LL P +L LT + AA EM+ Sbjct: 198 NAEQEKAAAHRGPAFLLEAGPGTGKTQTLVGRVKGLLADGVDPRKILLLTFSNKAAGEMA 257 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + T E + + T H+F Sbjct: 258 ERIARVDT--------------------------------------EAAAAIWIGTFHSF 279 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 ++++F E N+ + D ++ +L+E Sbjct: 280 GLDLIRRFHDELNLPLDPRLLDRTEAVELLE 310 >gi|332042510|gb|EGI78712.1| UvrD/REP helicase [Lacinutrix algicola 5H-3-7-4] Length = 779 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 55/162 (33%), Gaps = 38/162 (23%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 +SQ QL + V A AGSGKT +L R+ L+ +L LT T A Sbjct: 4 YLSQLNEAQLAPTIQKDGPMIVIAGAGSGKTRVLTYRIAYLMNQGVDSFNILALTFTNKA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ EI+ + L + Sbjct: 64 AKEMKGRIAEIVGDGEAKN-------------------------------------LWMG 86 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ S+F I D + S+KL+ K Sbjct: 87 TFHSVFAKILRFEGHHLGFPSNFTIYDTQDSQKLLGSIIKEM 128 >gi|91977833|ref|YP_570492.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB5] gi|91684289|gb|ABE40591.1| ATP-dependent DNA helicase, Rep family [Rhodopseudomonas palustris BisB5] Length = 847 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 +S EQ A + V A AG+GKT +L R+ +L A P+ +L +T T Sbjct: 34 YLSGLNPEQREAVESLDGPVLVLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNK 93 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ +++ G + Sbjct: 94 AAREMKLRLGQMLGQAVE-------------------------------------GMPWL 116 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ I++ +TS+F + D + +L+++ LA+ +D+ + Sbjct: 117 GTFHSIGGRILRYHAELVQLTSNFTVLDTDDQIRLLKQ----LLAADNIDDKRWPARMLA 172 Query: 194 EILEISNDEDI 204 +++ + + Sbjct: 173 GLIDGWKNRGL 183 >gi|150005966|ref|YP_001300710.1| ATP-dependent helicase [Bacteroides vulgatus ATCC 8482] gi|149934390|gb|ABR41088.1| ATP-dependent helicase [Bacteroides vulgatus ATCC 8482] Length = 1058 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 9/175 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH 91 A+AGSGKT L ++LL+ N +L +T T A EM R+L + W Sbjct: 8 LVYKASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIWIK 67 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 D + + + P + + A L ++ +V+TI +F +++M+ E Sbjct: 68 DKDSDPYLQKITEELEMPQEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLAREL 127 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 + ++ I E + +++ +A S + + + Y +LE + + Sbjct: 128 ELGANLNI--ELNNMEVLSDAVDSMIEKL-----DRQSPVLYWLLEYIEERIADD 175 >gi|113866335|ref|YP_724824.1| superfamily I DNA/RNA helicase [Ralstonia eutropha H16] gi|113525111|emb|CAJ91456.1| Superfamily I DNA and RNA helicase [Ralstonia eutropha H16] Length = 699 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 60/163 (36%), Gaps = 31/163 (19%) Query: 16 LISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 +S+ EQ A + + A AGSGKT+ L RV L+LA A P +L LT ++ Sbjct: 22 YLSRLNPEQRAAVEHGSDAPLLIIAGAGSGKTNTLAHRVAHLVLAGADPRRILLLTFSRR 81 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM RV I+ A + Sbjct: 82 AAAEMGRRVERIVDQALGTQTGAGRAALQ-----------------------------WS 112 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA +++++ ++ F I+D + L+ + Sbjct: 113 GTFHAIGARLLREYAETLGLSPAFTISDRGDAADLMHVVRHDL 155 >gi|330813748|ref|YP_004357987.1| ATP-dependent DNA helicase UvrD/PcrA [Candidatus Pelagibacter sp. IMCC9063] gi|327486843|gb|AEA81248.1| ATP-dependent DNA helicase UvrD/PcrA [Candidatus Pelagibacter sp. IMCC9063] Length = 744 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 67/192 (34%), Gaps = 43/192 (22%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 + ++ ++Q A + A AGSGKT +L RV L+ + +LC+T T Sbjct: 9 NYLNTLNNQQKEAVLHTDGPLLILAGAGSGKTKVLTTRVTHLIQSKKCFSNQILCVTFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ T Sbjct: 69 KAANEMRERVQGLVVG-------------------------------------NTNSVPW 91 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ I+++ + F I D KLI K+ LA+ +D + K Sbjct: 92 LGTFHSISNKILRKHAEAVGLKPSFTILDTLDQLKLI----KNILAAENIDIKKNPPKLI 147 Query: 193 YEILEISNDEDI 204 +++ ++ + Sbjct: 148 AHLIDHWKNKAL 159 >gi|149372162|ref|ZP_01891432.1| ATP-dependent DNA helicase II [unidentified eubacterium SCB49] gi|149354929|gb|EDM43491.1| ATP-dependent DNA helicase II [unidentified eubacterium SCB49] Length = 780 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 55/162 (33%), Gaps = 38/162 (23%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 + Q QL + + V A AGSGKT +L R+ L+ P +L LT T A Sbjct: 12 YLDQLNEAQLAPTIQKDGAMIVIAGAGSGKTRVLTFRIAYLMSQGVDPFNILALTFTNKA 71 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ I+ A + L + Sbjct: 72 AREMKSRITTIVGASEGKN-------------------------------------LWMG 94 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ + +F I D + S+ +I K Sbjct: 95 TFHSIFAKILRFEADKLGYPGNFTIYDTQDSQSVIRAVIKEM 136 >gi|307706682|ref|ZP_07643488.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK321] gi|307617926|gb|EFN97087.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK321] Length = 763 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 72/198 (36%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R G P D Sbjct: 59 TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDTGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 +++ + + ++ I+ Sbjct: 136 ERSILGTISNAKNDLIDD 153 >gi|284052478|ref|ZP_06382688.1| ATP-dependent nuclease subunit A [Arthrospira platensis str. Paraca] gi|291571372|dbj|BAI93644.1| putative helicase [Arthrospira platensis NIES-39] Length = 1070 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 30/179 (16%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 +S T ++Q A+ P +S V+A AG+GKT++LV+R L L P ++ +T T+ AA Sbjct: 1 MSLTNAQQAAATSP-QSIMVTAGAGTGKTYMLVERYLYYLREKGLSPLEIVAVTFTEKAA 59 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ R+ + + PN+ D IL + T Sbjct: 60 QELRSRIRSQVRQ------------------QLPNRPD----------ILAELEAAPIST 91 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 IHA I ++ P A + + F I + + K + E ++ L+ + + E + + Sbjct: 92 IHALASRICREHPQAAKVPADFQILEYLEGKIWLYEGLETALSKLPIQVFETIDYSLLS 150 >gi|188993614|ref|YP_001905624.1| DNA-dependent helicase II [Xanthomonas campestris pv. campestris str. B100] gi|167735374|emb|CAP53588.1| DNA helicase II [Xanthomonas campestris pv. campestris] Length = 723 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHT 71 +D ++ + E + A P V A AGSGKT +L+ R+ L + + +T T Sbjct: 1 MLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFT 58 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM HR + S G+ Sbjct: 59 NKAAGEMRHRTDLQLRNGSR--------------------------------------GM 80 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H +++ +A + F + D + +L++ +S Sbjct: 81 WIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQSL 125 >gi|283852748|ref|ZP_06370012.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B] gi|283571829|gb|EFC19825.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B] Length = 733 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 40/211 (18%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL Q A V A AGSGKT +V R+ RL+ P+++L LT T+ Sbjct: 1 MDLERDLNPAQRQAVLTTEGPVLVIAGAGSGKTRTIVYRLARLVAGGVDPASILLLTFTR 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM +S+A LL + G+ Sbjct: 61 KAAQEM-----------------------------------LSRAGLLLAMGPDGVSGVS 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 T HAF A ++++ A F + D+ S+ ++ +A K L D + + A Sbjct: 86 GGTFHAFAFATLRRYHAAAGYPDGFTVLDQADSEDVLGQA-KDKLGIGKGDRSFPRRSAI 144 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFF 223 +L + ++ E ++D++S R A L+ + Sbjct: 145 LGLLSKARNK--EMAVADVLS-REAFHLLPY 172 >gi|152990115|ref|YP_001355837.1| putative recombination protein RecB [Nitratiruptor sp. SB155-2] gi|151421976|dbj|BAF69480.1| ATP-dependent DNA helicase, UvrD/REP family [Nitratiruptor sp. SB155-2] Length = 855 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 7/126 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT+ L L L A+P ++ +T T AA EM RV++ + Sbjct: 4 IALKASAGTGKTYSLALYYLARLFEGANPYDIVAITFTNKAANEMRERVIDFLFDL---- 59 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 DE +I I K P M K + ++ L L + TI AF + I+++F A++ Sbjct: 60 DEEKLEQIASIIQKDPKTLSM-KQQQVIRKFL--VSRLNILTIDAFVQKILRKFAFFASL 116 Query: 154 TSHFAI 159 + F I Sbjct: 117 SPDFTI 122 >gi|291279137|ref|YP_003495972.1| exodeoxyribonuclease V subunit beta [Deferribacter desulfuricans SSM1] gi|290753839|dbj|BAI80216.1| exodeoxyribonuclease V, beta subunit [Deferribacter desulfuricans SSM1] Length = 1098 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 6/180 (3%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT+ + LRL++ + P +L +T T AA E+ +R+ + + Sbjct: 18 LIEASAGTGKTYTIAVIYLRLIIEKSMLPENILVVTFTVDAAEELKNRIRKFLVNAYRFI 77 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 +E + ++ K L L + TIH FC+ ++ + PLE Sbjct: 78 NEESDDIDSNLKLYLEGFKGDKKVLSHLKMALFMMDESAIFTIHKFCKKVLVENPLETKS 137 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 ++ I E K+LIE++ + + ++ + I + D E I D + Sbjct: 138 LFNYEI--ESSDKELIEDSVYHLFRKVFYGEDPKIIDLLFRIYSPT---DFENFIEDFLR 192 >gi|116620297|ref|YP_822453.1| ATP-dependent DNA helicase Rep [Candidatus Solibacter usitatus Ellin6076] gi|116223459|gb|ABJ82168.1| ATP-dependent DNA helicase, Rep family [Candidatus Solibacter usitatus Ellin6076] Length = 788 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 72/194 (37%), Gaps = 45/194 (23%) Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D + ++Q A + + A AGSGKT ++ R+ ++ + + PS +L +T T Sbjct: 1 MDFLKGLNAQQREAVTHIDGPLLILAGAGSGKTRVITHRIAHIITSRHVPPSAVLAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ D L + T Sbjct: 61 NKAAKEMRERVAALL------EDVPLDSMPT----------------------------- 85 Query: 132 KVQTIHAFCEAIMQQFPL-EANITSH----FAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 V T H+FC ++++ A + F I D+E ++I+ A ++ Sbjct: 86 -VSTFHSFCVRLLRRDGDPLARVRPGFTRRFTIYDDEDQLQIIKAAYRTL--GFDEKEFM 142 Query: 187 ELKKAFYEILEISN 200 + + A I N Sbjct: 143 QYRAALSRISHAKN 156 >gi|322437047|ref|YP_004219259.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9] gi|321164774|gb|ADW70479.1| UvrD/REP helicase [Acidobacterium sp. MP5ACTX9] Length = 929 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 61/173 (35%), Gaps = 45/173 (26%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 S ++ ++ +Q + A AGSGKT ++ R+ L+ P +L + Sbjct: 1 MSRLLEKMN--PQQQQGIQTVDGPVLLLAGAGSGKTRVITHRIAYLIEERGVSPDAILAV 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM+ RV +II S + Sbjct: 59 TFTNKAAKEMAERVDKIIGHSSLAKPTL-------------------------------- 86 Query: 129 GGLKVQTIHAFCEAIMQQFPLEA-----NITSHFAIADEEQSKKLIEEAKKST 176 T H+FC ++++ +T FAI DE + +++ A K Sbjct: 87 -----STFHSFCVRVLRRDIEALQVGGKGLTRTFAIYDETDQQAVVKSALKRL 134 >gi|163846878|ref|YP_001634922.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl] gi|222524699|ref|YP_002569170.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl] gi|163668167|gb|ABY34533.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl] gi|222448578|gb|ACM52844.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl] Length = 746 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 68/193 (35%), Gaps = 43/193 (22%) Query: 15 DLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL++ +Q + T V A GSGKT +L R+ L+ P +L +T T Sbjct: 4 DLLANLNEPQQRAVTTVTGPVLVLAGPGSGKTRVLTHRIAYLIAETGIDPLQILAVTFTN 63 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA E+ R+ ++ + Sbjct: 64 KAAREIRERLNLLVGETV-------------------------------------AHEIT 86 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T HA C +++ + F I D + ++L+ K L + L+ + +A Sbjct: 87 IGTFHAICTRWLRRDIVHLGRERDFVIYDSDDQERLM----KRVLRELNLNEKQYPPRAI 142 Query: 193 YEILEISNDEDIE 205 ++ + +E ++ Sbjct: 143 LGVISRAKNELVD 155 >gi|87199314|ref|YP_496571.1| ATP-dependent DNA helicase Rep [Novosphingobium aromaticivorans DSM 12444] gi|87134995|gb|ABD25737.1| ATP-dependent DNA helicase, Rep family [Novosphingobium aromaticivorans DSM 12444] Length = 765 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 79/223 (35%), Gaps = 49/223 (21%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + +D ++ + E + + A AG+GKT L R+ LL A PS +LC+ Sbjct: 12 SNAWLDGLNPPQRE--AVTTTEGPVLMLAGAGTGKTAALTARLANLLRQRLAWPSEILCV 69 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV +I Sbjct: 70 TFTNKAAREMRERVGNLIGPAVE------------------------------------- 92 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 G + T HA ++++ + S+F I D + +L+++ + + +D Sbjct: 93 GMPWLGTFHAIAAKMLRRHAELVGLQSNFTIIDTDDQLRLLKQ----LVVAEGIDEKRWP 148 Query: 189 KKAFYEILE-----ISNDEDIETLISDIISNRTALKLIFFFFS 226 + +++ N D++ L ++ +N + + + Sbjct: 149 ARQLAGLIDKWKNRGLNPADLDALENEAYANGKGQRFYALYQN 191 >gi|294775536|ref|ZP_06741046.1| UvrD/REP helicase [Bacteroides vulgatus PC510] gi|294450586|gb|EFG19076.1| UvrD/REP helicase [Bacteroides vulgatus PC510] Length = 1058 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 9/175 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH 91 A+AGSGKT L ++LL+ N +L +T T A EM R+L + W Sbjct: 8 LVYKASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIWIK 67 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 D + + + P + + A L ++ +V+TI +F +++M+ E Sbjct: 68 DKDSDPYLQKITEELEMPQEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLAREL 127 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 + ++ I E + +++ +A S + + + Y +LE + + Sbjct: 128 ELGANLNI--ELNNMEVLSDAVDSMIEKL-----DRQSPVLYWLLEYIEERIADD 175 >gi|325916758|ref|ZP_08179012.1| ATP-dependent DNA helicase UvrD [Xanthomonas vesicatoria ATCC 35937] gi|325537012|gb|EGD08754.1| ATP-dependent DNA helicase UvrD [Xanthomonas vesicatoria ATCC 35937] Length = 723 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHT 71 +D ++ + E + A P V A AGSGKT +L+ R+ L + + +T T Sbjct: 1 MLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFT 58 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM HR + S G+ Sbjct: 59 NKAAGEMRHRTDLQLRNGSR--------------------------------------GM 80 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H +++ +A + F + D + +L++ +S Sbjct: 81 WIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQSL 125 >gi|189466027|ref|ZP_03014812.1| hypothetical protein BACINT_02391 [Bacteroides intestinalis DSM 17393] gi|189434291|gb|EDV03276.1| hypothetical protein BACINT_02391 [Bacteroides intestinalis DSM 17393] Length = 1073 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 88/210 (41%), Gaps = 12/210 (5%) Query: 34 AWVSANAGSGKTHIL-VQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW--- 89 A+AGSGKT L V+ + L+L +L +T T A AEM R+L+ + Sbjct: 4 LVYKASAGSGKTFTLAVEYIKHLILNPRAYRQILAVTFTNKATAEMKERILQQLYGIWVS 63 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKAR-HLLITILETPGGLKVQTIHAFCEAIMQQFP 148 S+ L+ +Q K ++ D+ A L +L +V+TI +F +++M+ Sbjct: 64 DPASEPYLNRIREDLQRKNLSEDDIRLAAGTALQYMLHDYSRFRVETIDSFFQSVMRNLA 123 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208 E ++ + I E + +++ +A S + + +L+ N+ + Sbjct: 124 RELELSPNLNI--ELNNTEVLSDAVDSLIEKL-----TPSSPVLAWLLDYINERIADDKR 176 Query: 209 SDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 ++ + F Y+ + + + + L Sbjct: 177 WNVSNEIKRFGWNIFDEGYIEQGEGLRQQL 206 >gi|303233965|ref|ZP_07320614.1| UvrD/REP helicase [Finegoldia magna BVS033A4] gi|302494890|gb|EFL54647.1| UvrD/REP helicase [Finegoldia magna BVS033A4] Length = 967 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 68/164 (41%), Gaps = 36/164 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +I +++++L S ++ V+A AG+GKT ++ +R + +++C+T T AA Sbjct: 1 MIKFSENQKLAYSTINQNVCVNAGAGTGKTEVVSERFRYMYEKGIDIKSIVCITFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+++ + + D + V T Sbjct: 61 DEMKDRIIQKLNNPRLIDD------------------------------------INVST 84 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 I +FC+ I+ +I F I +++Q+ KL+ E L + Sbjct: 85 ISSFCKKIVSDNSYYLSIDPSFQIIEDDQANKLLNEIFDKILEN 128 >gi|108801294|ref|YP_641491.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. MCS] gi|119870445|ref|YP_940397.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. KMS] gi|108771713|gb|ABG10435.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. MCS] gi|119696534|gb|ABL93607.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. KMS] Length = 785 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 42/160 (26%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E +D ++ + + +L + A AGSGKT +L +R+ LL A + +L +T Sbjct: 18 ELLDGLNPQQRQAVL--HEGSPLLIVAGAGSGKTAVLTRRIAYLLAARDVGVGQVLAITF 75 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV+ ++ +AR Sbjct: 76 TNKAAAEMRERVVHLVG---------------------------PRARS----------- 97 Query: 131 LKVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLI 169 + V T H+ C I++ Q L + S+F+I D + S++L+ Sbjct: 98 MWVATFHSTCVRILRNQASLLPGLNSNFSIYDADDSRRLL 137 >gi|320546849|ref|ZP_08041154.1| ATP-dependent DNA helicase PcrA [Streptococcus equinus ATCC 9812] gi|320448513|gb|EFW89251.1| ATP-dependent DNA helicase PcrA [Streptococcus equinus ATCC 9812] Length = 770 Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLNGMNDKQAEAVKTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFINPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R P +D Sbjct: 59 TFTNKAAREMRER----------------------AMALNPATADTL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L ++ LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKTLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++A + + ++ ++ Sbjct: 136 ERAILGTISNAKNDLLDE 153 >gi|265753493|ref|ZP_06088848.1| ATP-dependent helicase [Bacteroides sp. 3_1_33FAA] gi|263235207|gb|EEZ20731.1| ATP-dependent helicase [Bacteroides sp. 3_1_33FAA] Length = 1058 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 9/175 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH 91 A+AGSGKT L ++LL+ N +L +T T A EM R+L + W Sbjct: 8 LVYKASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIWIK 67 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 D + + + P + + A L ++ +V+TI +F +++M+ E Sbjct: 68 DKDSDPYLQKITEELEMPPEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLAREL 127 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 + ++ I E + +++ +A S + + + Y +LE + + Sbjct: 128 ELGANLNI--ELNNMEVLSDAVDSMIEKL-----DRQSPVLYWLLEYIEERIADD 175 >gi|254881838|ref|ZP_05254548.1| ATP-dependent helicase [Bacteroides sp. 4_3_47FAA] gi|319641141|ref|ZP_07995844.1| ATP-dependent helicase [Bacteroides sp. 3_1_40A] gi|254834631|gb|EET14940.1| ATP-dependent helicase [Bacteroides sp. 4_3_47FAA] gi|317387272|gb|EFV68148.1| ATP-dependent helicase [Bacteroides sp. 3_1_40A] Length = 1058 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 9/175 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH 91 A+AGSGKT L ++LL+ N +L +T T A EM R+L + W Sbjct: 8 LVYKASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIWIK 67 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 D + + + P + + A L ++ +V+TI +F +++M+ E Sbjct: 68 DKDSDPYLQKITEELEIPQEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLAREL 127 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 + ++ I E + +++ +A S + + + Y +LE + + Sbjct: 128 ELGANLNI--ELNNMEVLSDAVDSMIEKL-----DRQSPVLYWLLEYIEERIADD 175 >gi|319899138|ref|YP_004159231.1| DNA helicase II [Bartonella clarridgeiae 73] gi|319403102|emb|CBI76660.1| DNA helicase II [Bartonella clarridgeiae 73] Length = 817 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 75/198 (37%), Gaps = 44/198 (22%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q E ++ ++ ++ + V A AG+GKT +L R+ +L AHP +L Sbjct: 38 QYEPEYLEKLN--PEQKQAVINTEGPILVLAGAGTGKTRVLTTRISHILHLGLAHPKQIL 95 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T +A EM R+ E+I Sbjct: 96 AVTFTNKSAHEMKMRIGELIGKTVE----------------------------------- 120 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ I++++ ++ S+F I D + +L+++ + + LD+ Sbjct: 121 --GMPWLGTFHSTGVKILRRYAELVDLKSNFTILDRDDVIRLLKQ----LIQAEGLDDKR 174 Query: 187 ELKKAFYEILEISNDEDI 204 + +++ ++ + Sbjct: 175 WPARNLAMMIDSWKNQGL 192 >gi|291456202|ref|ZP_06595592.1| UvrD/REP helicase family protein [Bifidobacterium breve DSM 20213] gi|291381479|gb|EFE88997.1| UvrD/REP helicase family protein [Bifidobacterium breve DSM 20213] Length = 1311 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 66/180 (36%), Gaps = 18/180 (10%) Query: 22 SEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 + + + P + V A AGSGKT + QR++ L+ P +L LT T+ AA E+ Sbjct: 9 EQAAIINAPAQDDVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLE 68 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 RV ++ + P S + R L + T AF Sbjct: 69 RVSAAVSR---------EDSPAAQGAQTPGASTPNFDRAFLKPA--------IFTYDAFF 111 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 + I++Q+ L + E + +L E + + ++ +L +S Sbjct: 112 QTIVRQYGLLVGFDQNTQPLSEAGALQLATEVIDEHMDQALSEDLGAFTSLARSVLALSG 171 >gi|153806228|ref|ZP_01958896.1| hypothetical protein BACCAC_00483 [Bacteroides caccae ATCC 43185] gi|149130905|gb|EDM22111.1| hypothetical protein BACCAC_00483 [Bacteroides caccae ATCC 43185] Length = 1056 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 9/175 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + Sbjct: 5 LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYGIQTG 64 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHL-LITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 + + + ++ +A + L +L +V+TI +F +++M+ E Sbjct: 65 DKGSEAYLNRIKEETGKTEQEIREAASIALGYMLHDYSRFRVETIDSFFQSVMRNLAREL 124 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 ++ + I E + +++ EA S + + +L+ N+ + Sbjct: 125 ELSPNLNI--ELNNTEVLSEAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172 >gi|299140513|ref|ZP_07033651.1| UvrD/REP helicase domain-containing protein [Prevotella oris C735] gi|298577479|gb|EFI49347.1| UvrD/REP helicase domain-containing protein [Prevotella oris C735] Length = 1075 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 6/168 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95 A+AGSGKT L + ++LL+ N H L +T T A EM R+L + S L + Sbjct: 9 ASAGSGKTFTLAVQYIKLLVENPHAYRHTLAVTFTNKATEEMKMRILSQLYGISRGLKES 68 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 E K Q + ++ A + L ++ +V+TI AF + +++ E +T+ Sbjct: 69 KPYLESVKQQTSLDETTIINNASYALSELIHNYSYFRVETIDAFFQTVLRNLARELELTA 128 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + I +Q + ++A + + +++ L + + + D+D Sbjct: 129 NLRIELNDQQVE--QQAVDQLIEDL--NDSSLLLSWILDYIHENMDDD 172 >gi|126664112|ref|ZP_01735105.1| ATP-dependent DNA helicase II [Flavobacteria bacterium BAL38] gi|126623826|gb|EAZ94521.1| ATP-dependent DNA helicase II [Flavobacteria bacterium BAL38] Length = 778 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 52/157 (33%), Gaps = 38/157 (24%) Query: 12 ETIDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 E ISQ +QL V A AGSGKT +L R+ L+ +L LT Sbjct: 3 EMQKYISQLNEAQQLPVLQKDGPMIVIAGAGSGKTRVLTVRIANLMSQGVDAFNILALTF 62 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ +I+ Sbjct: 63 TNKAAREMKKRIADIVGN-------------------------------------NEAKN 85 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKK 167 L + T H+ I++ + S+F I D + S + Sbjct: 86 LWMGTFHSVFAKILRSEADKLGYPSNFTIYDSQDSLR 122 >gi|322375316|ref|ZP_08049829.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C300] gi|321279579|gb|EFX56619.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. C300] Length = 763 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R G P D Sbjct: 59 TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|307292736|ref|ZP_07572582.1| UvrD/REP helicase [Sphingobium chlorophenolicum L-1] gi|306880802|gb|EFN12018.1| UvrD/REP helicase [Sphingobium chlorophenolicum L-1] Length = 770 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 42/186 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78 ++ V A AG+GKT L R+ L+ A PS +L +T T AA EM Sbjct: 30 NTPQREAVLTTEGPVLVLAGAGTGKTAALTARLAHLIATRRAWPSEILAVTFTNKAAREM 89 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +I G + T HA Sbjct: 90 RERVGRMIGPAVE-------------------------------------GMPWLGTFHA 112 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 ++++ + S+F I D + +L+++ + + +D + +++ Sbjct: 113 IAAKMLRRHAELVGLQSNFTILDTDDQLRLMKQ----LIQAEGIDEKRWPARQLAGLIDQ 168 Query: 199 SNDEDI 204 ++ + Sbjct: 169 WKNKGL 174 >gi|302380542|ref|ZP_07269007.1| UvrD/REP helicase [Finegoldia magna ACS-171-V-Col3] gi|302311485|gb|EFK93501.1| UvrD/REP helicase [Finegoldia magna ACS-171-V-Col3] Length = 967 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 68/164 (41%), Gaps = 36/164 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +I +++++L S ++ V+A AG+GKT ++ +R + +++C+T T AA Sbjct: 1 MIKFSENQKLAYSTINQNVCVNAGAGTGKTEVVSERFRYMYEKGIDIKSIVCITFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+++ + + D + V T Sbjct: 61 DEMKDRIIQKLNNPRLIDD------------------------------------INVST 84 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 I +FC+ I+ +I F I +++Q+ KL+ E L + Sbjct: 85 ISSFCKKIVSDNSYYLSIDPSFQIIEDDQANKLLNEIFDKILEN 128 >gi|212693031|ref|ZP_03301159.1| hypothetical protein BACDOR_02538 [Bacteroides dorei DSM 17855] gi|212664398|gb|EEB24970.1| hypothetical protein BACDOR_02538 [Bacteroides dorei DSM 17855] Length = 1058 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 9/175 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH 91 A+AGSGKT L ++LL+ N +L +T T A EM R+L + W Sbjct: 8 LVYKASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIWIK 67 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 D + + + P + + A L ++ +V+TI +F +++M+ E Sbjct: 68 DKDSDPYLQKITEELEMPPEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLAREL 127 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 + ++ I E + +++ +A S + + + Y +LE + + Sbjct: 128 ELGANLNI--ELNNMEVLSDAVDSMIEKL-----DRQSPVLYWLLEYIEERIADD 175 >gi|330718929|ref|ZP_08313529.1| ATP-dependent DNA helicase PcrA [Leuconostoc fallax KCTC 3537] Length = 745 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 42/184 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 + + A AGSGKT +L R+ L+ N P +L +T T AA EM Sbjct: 11 NDKQAEAVQTTQGPLLIMAGAGSGKTRVLTHRIAHLIEDLNIFPWRILAITFTNKAAKEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ ++ + + V T HA Sbjct: 71 KERIARLVDE-------------------------------------DVARDIWVSTFHA 93 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + ++ +F I D + L+ K + + LD N+ +A + Sbjct: 94 LAVRILRRDGEKIGLSRNFTIVDTSAQRTLM----KRVINDLNLDTNQYDPRAILGAISN 149 Query: 199 SNDE 202 + ++ Sbjct: 150 AKND 153 >gi|78049804|ref|YP_365979.1| DNA-dependent helicase II [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926001|ref|ZP_08187367.1| ATP-dependent DNA helicase UvrD [Xanthomonas perforans 91-118] gi|78038234|emb|CAJ25979.1| DNA helicase II [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543597|gb|EGD15014.1| ATP-dependent DNA helicase UvrD [Xanthomonas perforans 91-118] Length = 723 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 57/165 (34%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHT 71 +D ++ + E + A P V A AGSGKT +L+ R+ L + + +T T Sbjct: 1 MLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFAVTFT 58 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM HR + S G+ Sbjct: 59 NKAAGEMRHRTDLQLRNGSR--------------------------------------GM 80 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H +++ +A + F + D + +L++ ++ Sbjct: 81 WIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQAL 125 >gi|103488489|ref|YP_618050.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256] gi|98978566|gb|ABF54717.1| ATP-dependent DNA helicase, Rep family [Sphingopyxis alaskensis RB2256] Length = 770 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 63/183 (34%), Gaps = 42/183 (22%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81 ++ + A AG+GKT L R+ ++ A PS +L +T T AA EM R Sbjct: 29 QRQAVLTTEGPVLMLAGAGTGKTAALTARLAHIIATRRAWPSEILAVTFTNKAAREMRER 88 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + +I G + T H+ C Sbjct: 89 IGRMIGDAVE-------------------------------------GMPWLGTFHSICA 111 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 ++++ + S+F I D + +++++ + + LD + +++ + Sbjct: 112 RMLRRHAELVGLQSNFTILDTDDQLRVLKQ----LIQAEGLDEKRWPARQLAGLIDKWKN 167 Query: 202 EDI 204 + Sbjct: 168 RGL 170 >gi|322391967|ref|ZP_08065431.1| ATP-dependent DNA helicase PcrA [Streptococcus peroris ATCC 700780] gi|321145193|gb|EFX40590.1| ATP-dependent DNA helicase PcrA [Streptococcus peroris ATCC 700780] Length = 763 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R G P D Sbjct: 59 TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|320108905|ref|YP_004184495.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4] gi|319927426|gb|ADV84501.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4] Length = 1126 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 58/164 (35%), Gaps = 44/164 (26%) Query: 14 IDLISQTKS------EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 + + T+ ++L A + + A G+GKT LV RV LL P +L Sbjct: 186 LRPLEWTQEAPLNELQELAAKHRGEAYLLEAGPGTGKTRTLVARVEGLLADGVDPRRILV 245 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT + AA+EM R+ E Sbjct: 246 LTFSNKAASEMGERIARKHR--------------------------------------EA 267 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 + V T HAF ++++F E + + D ++ +L+E+ Sbjct: 268 AAAMWVGTFHAFGLDLVRRFFTELGLPRDPRMMDRTEAVELLED 311 >gi|237709837|ref|ZP_04540318.1| ATP-dependent helicase [Bacteroides sp. 9_1_42FAA] gi|229455930|gb|EEO61651.1| ATP-dependent helicase [Bacteroides sp. 9_1_42FAA] Length = 1058 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 9/175 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH 91 A+AGSGKT L ++LL+ N +L +T T A EM R+L + W Sbjct: 8 LVYKASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIWIK 67 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 D + + + P + + A L ++ +V+TI +F +++M+ E Sbjct: 68 DKDSNPYLQKITEELEMPPEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLAREL 127 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 + ++ I E + +++ +A S + + + Y +LE + + Sbjct: 128 ELGANLNI--ELNNMEVLSDAVDSMIEKL-----DRQSPVLYWLLEYIEERIADD 175 >gi|145222451|ref|YP_001133129.1| ATP-dependent DNA helicase PcrA [Mycobacterium gilvum PYR-GCK] gi|315442898|ref|YP_004075777.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. Spyr1] gi|145214937|gb|ABP44341.1| ATP-dependent DNA helicase PcrA [Mycobacterium gilvum PYR-GCK] gi|315261201|gb|ADT97942.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. Spyr1] Length = 780 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 41/158 (25%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 DL+ +Q A + A AGSGKT +L +R+ LL A + +L +T T Sbjct: 17 DLLEGLNPQQRQAVLHEGTPLLIVAGAGSGKTAVLTRRIAYLLAARDVGVGQVLAITFTN 76 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM RV+ ++ +AR+ + Sbjct: 77 KAAAEMRERVVGLVG---------------------------PRARN-----------MW 98 Query: 133 VQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLI 169 V T H+ C I++ Q L + S+F+I D + S++L+ Sbjct: 99 VSTFHSTCVRILRNQASLLPGLNSNFSIYDADDSRRLL 136 >gi|126437275|ref|YP_001072966.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. JLS] gi|126237075|gb|ABO00476.1| ATP-dependent DNA helicase PcrA [Mycobacterium sp. JLS] Length = 784 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 42/160 (26%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E +D ++ + + +L + A AGSGKT +L +R+ LL A + +L +T Sbjct: 18 ELLDGLNPQQRQAVL--HEGSPLLIVAGAGSGKTAVLTRRIAYLLAARDVGVGQVLAITF 75 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV+ +I +AR Sbjct: 76 TNKAAAEMRERVVGLIG---------------------------PRARS----------- 97 Query: 131 LKVQTIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLI 169 + V T H+ C I++ Q L + S+F+I D + S++L+ Sbjct: 98 MWVATFHSTCVRILRNQASLLPGLNSNFSIYDADDSRRLL 137 >gi|319938934|ref|ZP_08013298.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus 1_2_62CV] gi|319811984|gb|EFW08250.1| ATP-dependent DNA helicase PcrA [Streptococcus anginosus 1_2_62CV] Length = 760 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 63/192 (32%), Gaps = 44/192 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L + + A AGSGKT +L R+ L+ +P +L +T T A Sbjct: 5 LTGMNDRQAEAVQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAITFTNKA 64 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R + A + Sbjct: 65 AREMKERAYTLNPATEDCL---------------------------------------IA 85 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C I+++ +F I D + + L+ K L ++ LD + ++A Sbjct: 86 TFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKTLNLDPKKWNERAILG 141 Query: 195 ILEISNDEDIET 206 + + ++ I+ Sbjct: 142 TISNAKNDLIDE 153 >gi|288926530|ref|ZP_06420448.1| putative UvrD/REP helicase domain protein [Prevotella buccae D17] gi|288336672|gb|EFC75040.1| putative UvrD/REP helicase domain protein [Prevotella buccae D17] Length = 1116 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 4/149 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEII-TAWSHLSDE 95 A+AGSGKT L +RL++ N +L +T T A EM R+L + W Sbjct: 9 ASAGSGKTFTLATEYIRLVIDNPTAYRTILAVTFTNKATEEMKLRILSQLYGIWRADKAS 68 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 K + P + +A L ++ +V+TI F +++++ E ++T+ Sbjct: 69 EGYYNKVKETSELPEREIRKRAGMALRNLIHNYNYFRVETIDTFFQSVLRNLARELDLTA 128 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDN 184 + I + + ++A + + N Sbjct: 129 NLRIGLNDYQVE--QQAVDRLIEDLDAKN 155 >gi|60681671|ref|YP_211815.1| putative helicase [Bacteroides fragilis NCTC 9343] gi|60493105|emb|CAH07886.1| putative helicase [Bacteroides fragilis NCTC 9343] Length = 1057 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 10/212 (4%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + Sbjct: 5 IVYKASAGSGKTFTLAVEYIKLLIRNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63 Query: 93 SDEILSAEITKIQGKKPNKSDMSK--ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 D A + +I + + D + A L +L +V+TI +F +++M+ E Sbjct: 64 GDPDSDAYLKRIIAETGHSEDEIRTTAGIALGYMLHDYSRFRVETIDSFFQSVMRNLARE 123 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISD 210 ++ + I E + +++ +A S + + N + + ++ +D +SD Sbjct: 124 LELSPNLNI--ELNNVEVLSDAVDSMIEKL--GPNSPVLVWLLDYIDERIADDKRWNVSD 179 Query: 211 IISN--RTALKLIFFFFSYLWRRKIIEKSLWS 240 I + R + RR++ + ++ Sbjct: 180 EIKSFGRNIFDEGYIEKGDGLRRRLRDPNVIH 211 >gi|265763690|ref|ZP_06092258.1| ATP-dependent helicase [Bacteroides sp. 2_1_16] gi|263256298|gb|EEZ27644.1| ATP-dependent helicase [Bacteroides sp. 2_1_16] Length = 1057 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 10/212 (4%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + Sbjct: 5 IVYKASAGSGKTFTLAVEYIKLLIRNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63 Query: 93 SDEILSAEITKIQGKKPNKSDMSK--ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 D A + +I + + D + A L +L +V+TI +F +++M+ E Sbjct: 64 GDPDSDAYLKRIIAETGHSEDEIRTTAGIALGYMLHDYSRFRVETIDSFFQSVMRNLARE 123 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISD 210 ++ + I E + +++ +A S + + N + + ++ +D +SD Sbjct: 124 LELSPNLNI--ELNNVEVLSDAVDSMIEKL--GPNSPVLVWLLDYIDERIADDKRWNVSD 179 Query: 211 IISN--RTALKLIFFFFSYLWRRKIIEKSLWS 240 I + R + RR++ + ++ Sbjct: 180 EIKSFGRNIFDEGYIEKGDGLRRRLRDPNVIH 211 >gi|218281364|ref|ZP_03487842.1| hypothetical protein EUBIFOR_00407 [Eubacterium biforme DSM 3989] gi|218217456|gb|EEC90994.1| hypothetical protein EUBIFOR_00407 [Eubacterium biforme DSM 3989] Length = 725 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 66/168 (39%), Gaps = 41/168 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 + +D +++ ++ A+ + A AGSGKT +L+ R++ L+ P+ +L + Sbjct: 2 SNSILDTLNEN--QRTAATTINEHVRIIAGAGSGKTRVLMARIVYLVQDCGILPNRILAI 59 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R+ + + + + Sbjct: 60 TFTNKAANEMKTRLTAQLGSMTSV------------------------------------ 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 +++ TIH+ C ++++ FAI D E K +++ K+ Sbjct: 84 --VRISTIHSLCVRMLREDADLIGYPKTFAIMDPEDQKAILKPIYKTL 129 >gi|325860059|ref|ZP_08173185.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A] gi|325482344|gb|EGC85351.1| UvrD/REP helicase [Prevotella denticola CRIS 18C-A] Length = 1111 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 76/168 (45%), Gaps = 6/168 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L + L++ N +L +T T A EM R+L + +H Sbjct: 27 ASAGSGKTFTLASEYITLVVKNPQDYKKILAVTFTNKATQEMKIRILSQLYGIAHHLPGS 86 Query: 97 LSAEITKIQGKKPNKSDMSK-ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + ++ ++ + + A L + +VQTI AF +++++ E N+T+ Sbjct: 87 QAYFDQVVRKTGFQETVIRENAAEALSLLTHHYNEFRVQTIDAFFQSVLRNLARELNLTA 146 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + I + + +A + S+ + EE+ K + ++ + ++D Sbjct: 147 NLRIDLNDDQVE--AQAVDEMIDSL--EEGEEVLKWIRDYIDKNIEDD 190 >gi|270292792|ref|ZP_06199003.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M143] gi|270278771|gb|EFA24617.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M143] Length = 763 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 46/200 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R G P D Sbjct: 59 TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIETLI 208 ++ + + ++ I+ ++ Sbjct: 136 ERTILGTISNAKNDLIDDVV 155 >gi|53713424|ref|YP_099416.1| ATP-dependent helicase [Bacteroides fragilis YCH46] gi|52216289|dbj|BAD48882.1| ATP-dependent helicase [Bacteroides fragilis YCH46] Length = 1057 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 10/212 (4%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + Sbjct: 5 IVYKASAGSGKTFTLAVEYIKLLIRNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63 Query: 93 SDEILSAEITKIQGKKPNKSDMSK--ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 D A + +I + + D + A L +L +V+TI +F +++M+ E Sbjct: 64 GDPDSDAYLKRIIAETGHSEDEIRTTAGIALGYMLHDYSRFRVETIDSFFQSVMRNLARE 123 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISD 210 ++ + I E + +++ +A S + + N + + ++ +D +SD Sbjct: 124 LELSPNLNI--ELNNVEVLSDAVDSMIEKL--GPNSPVLVWLLDYIDERIADDKRWNVSD 179 Query: 211 IISN--RTALKLIFFFFSYLWRRKIIEKSLWS 240 I + R + RR++ + ++ Sbjct: 180 EIKSFGRNIFDEGYIEKGDGLRRRLRDPNVIH 211 >gi|27380604|ref|NP_772133.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110] gi|27353769|dbj|BAC50758.1| ATP-dependent DNA helicase [Bradyrhizobium japonicum USDA 110] Length = 685 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 61/168 (36%), Gaps = 36/168 (21%) Query: 16 LISQTKSEQLLASDPT--------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 + +EQ A + V A AGSGKT+ L RV L++A A P +L Sbjct: 4 YLDTLNAEQRRAVEHGVADGATVGAPLLVIAGAGSGKTNTLAHRVAHLIVAGADPRRILL 63 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T ++ AAAEM+ RV I + + N + M A Sbjct: 64 MTFSRRAAAEMAGRVER----------------IARKVLGENNAAIMRDALT-------- 99 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H +++++ + F I D E S L+ + Sbjct: 100 ----WAGTFHGIGARLLREYAERIGVDPAFTIHDREDSADLMNLVRHE 143 >gi|307703485|ref|ZP_07640427.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037] gi|307622892|gb|EFO01887.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis ATCC 35037] Length = 739 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 72/198 (36%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R G P D Sbjct: 59 TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 +++ + + ++ I+ Sbjct: 136 ERSILGTISNAKNDLIDD 153 >gi|294666234|ref|ZP_06731487.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604007|gb|EFF47405.1| DNA helicase II [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 728 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 41/169 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67 + S +D ++ + E + A P V A AGSGKT +L+ R+ L + + Sbjct: 2 DVSHLLDHLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLIHRIAWLNEVQGVPNHGIFA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM HR + S Sbjct: 60 VTFTNKAAGEMRHRTDLQLRNGSRW----------------------------------- 84 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T H +++ +A + F + D + +L++ ++ Sbjct: 85 ---IWIGTFHGLAHRLLRLHWQDARLPEGFQVMDSDDQLRLVKRVVQAL 130 >gi|237725569|ref|ZP_04556050.1| ATP-dependent helicase [Bacteroides sp. D4] gi|229436256|gb|EEO46333.1| ATP-dependent helicase [Bacteroides dorei 5_1_36/D4] Length = 1058 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 9/175 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSH 91 A+AGSGKT L ++LL+ N +L +T T A EM R+L + W Sbjct: 8 LVYKASAGSGKTFTLAVEYIKLLIQNPRAYRNILAVTFTNKATTEMKERILSQLYGIWIK 67 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 D + + + P + + A L ++ +V+TI +F +++M+ E Sbjct: 68 DKDSDPYLQKITEELEMPPEDIRTAAGTALHYMIHDYSRFRVETIDSFFQSVMRNLAREL 127 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 + ++ I E + +++ +A S + + + Y +LE + + Sbjct: 128 ELGANLNI--ELNNMEVLSDAVDSIIEKL-----DRQSPVLYWLLEYIEERIADD 175 >gi|163788705|ref|ZP_02183150.1| ATP-dependent DNA helicase II [Flavobacteriales bacterium ALC-1] gi|159875942|gb|EDP70001.1| ATP-dependent DNA helicase II [Flavobacteriales bacterium ALC-1] Length = 776 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 55/162 (33%), Gaps = 38/162 (23%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 +SQ QL + + A AGSGKT +L R+ L+ +L LT T A Sbjct: 4 YLSQLNDAQLAPTLQKDGPMIIIAGAGSGKTRVLTYRIAYLMAQGVDAFNILALTFTNKA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ +I+ + L + Sbjct: 64 AKEMKGRIADIVGDGEAKN-------------------------------------LWMG 86 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ S+F I D + S+KL+ K Sbjct: 87 TFHSVFAKILRFEGHHLGFPSNFTIYDTQDSQKLLGSIIKEM 128 >gi|323526899|ref|YP_004229052.1| UvrD/REP helicase [Burkholderia sp. CCGE1001] gi|323383901|gb|ADX55992.1| UvrD/REP helicase [Burkholderia sp. CCGE1001] Length = 741 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 62/174 (35%), Gaps = 38/174 (21%) Query: 11 SETIDLISQTKSEQLLASD--------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62 S+ +++ Q A + P + V A AGSGKT+ L RV L++ A P Sbjct: 41 SDAAAWLAKLNDAQREAVEYGADTPHAPPGALLVIAGAGSGKTNTLAHRVANLMVKGADP 100 Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122 +L LT ++ AA EM+ RV I TA L Sbjct: 101 RRILLLTFSRRAALEMTRRVTRIATA------------------------------ALGT 130 Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G T H+ +++++ + F I D E S L+ + Sbjct: 131 RAALAQGLSWAGTFHSVGARLLREYAELIGLAPAFTINDREDSADLMNLVRHEL 184 >gi|306825147|ref|ZP_07458489.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432583|gb|EFM35557.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 763 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R G P D Sbjct: 59 TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|217968983|ref|YP_002354217.1| UvrD/REP helicase [Thauera sp. MZ1T] gi|217506310|gb|ACK53321.1| UvrD/REP helicase [Thauera sp. MZ1T] Length = 745 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 57/175 (32%), Gaps = 38/175 (21%) Query: 11 SETIDLISQTKSEQLLASDPT---------RSAWVSANAGSGKTHILVQRVLRLLLANAH 61 D ++ Q A V A AGSGKT L RV RL A A Sbjct: 24 PPAADPLAALDPAQRAAVGHGIGADGRIDAGPLLVIAGAGSGKTGTLAHRVARLAAAGAD 83 Query: 62 PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121 P+ +L LT ++ AA EM RV I+ + + AE+ Sbjct: 84 PARILLLTFSRRAADEMGRRVRRILAQAAADRPGLARAELQ------------------- 124 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA +++ + F+I D E S L+ + Sbjct: 125 ----------WAGTFHAIGARLLRDHAGRIGLDPGFSIHDREDSADLMNLVRHEL 169 >gi|320536129|ref|ZP_08036182.1| putative ATP-dependent DNA helicase PcrA [Treponema phagedenis F0421] gi|320147046|gb|EFW38609.1| putative ATP-dependent DNA helicase PcrA [Treponema phagedenis F0421] Length = 664 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 54/157 (34%), Gaps = 38/157 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 ++ S + A AGSGKT ++ R+ +L S +L LT T AA EM Sbjct: 8 NPEQRKAVSTIEGPVLIIAGAGSGKTRVITFRIAHMLDRGIPQSQILALTFTNKAAREME 67 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ E+ L V T HAF Sbjct: 68 ERIKELTGK--------------------------------------KLQNLTVSTFHAF 89 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 I+++ S+F+I DE +LI+E K Sbjct: 90 GVKILREHIAALGWRSNFSIYDETDRNQLIKELGKEL 126 >gi|239617417|ref|YP_002940739.1| Exodeoxyribonuclease V [Kosmotoga olearia TBF 19.5.1] gi|239506248|gb|ACR79735.1| Exodeoxyribonuclease V [Kosmotoga olearia TBF 19.5.1] Length = 991 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 84/225 (37%), Gaps = 36/225 (16%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA------NAHPSTL 65 + DL E + R ++SA+AG+GKT+ LV +++ + Sbjct: 5 KIKDLFGYFVEEGRIIVSVNRDIFISASAGTGKTYRLVSHYVQIFEEAFRHGEKLDVHNV 64 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 + +T T+ A+ EM RV I KI+ +P ++R + Sbjct: 65 VAITFTRKASKEMKERVHLRINE--------------KIENNEPGDWKNLRSRLIY---- 106 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 + TIH+FCE I+++ + I F I + L + ++ + Sbjct: 107 -----AWISTIHSFCERILRESSIFLGIDPGFEILSGVRRVALEAQVVRTYFEQHL---- 157 Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWR 230 +EL+ F I D+ E + R L++I + + Sbjct: 158 DELEPLFDLI---GVDKTFELFKKALSGMRVNLRIISPYEEEPLK 199 >gi|206900332|ref|YP_002251111.1| ATP-dependent DNA helicase PcrA [Dictyoglomus thermophilum H-6-12] gi|206739435|gb|ACI18493.1| ATP-dependent DNA helicase PcrA [Dictyoglomus thermophilum H-6-12] Length = 625 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 39/165 (23%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D + + EQL A + R + A AGSGKT ++ ++ L+ N A P ++ LT T Sbjct: 1 MDFLKELNKEQLEAVLEIERPVLILAGAGSGKTRVITYKIAYLIKNNIAKPENIVALTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ A + + Sbjct: 61 NKAAEEMKKRINNMLGA-------------------------------------KDADKV 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H F +++ F +++ +F I DE + LI++ K Sbjct: 84 WAGTFHGFGLYLLKNFGKYWSLSPYFVIYDENDQEDLIKDILKDL 128 >gi|219684438|ref|ZP_03539382.1| ATP-dependent DNA helicase PcrA [Borrelia garinii PBr] gi|219672427|gb|EED29480.1| ATP-dependent DNA helicase PcrA [Borrelia garinii PBr] Length = 658 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 78/232 (33%), Gaps = 65/232 (28%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S + + + + + A AGSGKT ++ R+ LLL +L LT T AA E Sbjct: 9 SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQKEILALTFTNKAANE 68 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ +I+ + L V T H Sbjct: 69 MKDRIKKILKSP--------------------------------------LSNLMVSTFH 90 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS---------------------- 175 AF +++ +F+I D+ L++E Sbjct: 91 AFGLFFLKENYKLLGYKKNFSIYDDNDRISLLKEILLDEGLLNKKVSLNSLSNTISLLKN 150 Query: 176 --TLASIMLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALKLIF 222 + + + + + K + E L + N D + LI +++SN + ++ + Sbjct: 151 GILTLNDLKEEDISIFKLYEERLRLYNSFDFDDLILKPKELLSNNSDIRSKY 202 >gi|315609029|ref|ZP_07883999.1| ATP-dependent helicase [Prevotella buccae ATCC 33574] gi|315249233|gb|EFU29252.1| ATP-dependent helicase [Prevotella buccae ATCC 33574] Length = 1121 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 4/149 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEII-TAWSHLSDE 95 A+AGSGKT L +RL++ N +L +T T A EM R+L + W Sbjct: 14 ASAGSGKTFTLATEYIRLVIDNPTAYRTILAVTFTNKATEEMKLRILSQLYGIWRADKAS 73 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 K + P + +A L ++ +V+TI F +++++ E ++T+ Sbjct: 74 EGYYNKVKETSELPEREIRKRAGMALRNLIHNYNYFRVETIDTFFQSVLRNLARELDLTA 133 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDN 184 + I + + ++A + + N Sbjct: 134 NLRIGLNDYQVE--QQAVDRLIEDLDAKN 160 >gi|188996189|ref|YP_001930440.1| UvrD/REP helicase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931256|gb|ACD65886.1| UvrD/REP helicase [Sulfurihydrogenibium sp. YO3AOP1] Length = 706 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 53/158 (33%), Gaps = 41/158 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 + ++ V A AGSGKT ++ +++ L+ + +L +T T AA EM Sbjct: 11 NERQKEAVLHFDSPLLVLAGAGSGKTKVITHKIMYLVKHYGIPLNRILAITFTNKAAEEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + I V T H+ Sbjct: 71 KERIEKAIGEKPQ----------------------------------------WVMTFHS 90 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 F ++ +F I DEE SKKLI++ K Sbjct: 91 FAAKFLRMEAENIGYDRNFVIYDEEDSKKLIKKVLKDL 128 >gi|253565411|ref|ZP_04842866.1| ATP-dependent helicase [Bacteroides sp. 3_2_5] gi|251945690|gb|EES86097.1| ATP-dependent helicase [Bacteroides sp. 3_2_5] Length = 1057 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 10/212 (4%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + Sbjct: 5 IVYKASAGSGKTFTLAVEYIKLLIRNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63 Query: 93 SDEILSAEITKIQGKKPNKSDMSK--ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 D A + +I + + D + A L +L +V+TI +F +++M+ E Sbjct: 64 GDPDSDAYLKRIIAETGHSEDEIRTTAGIALGYMLHDYSRFRVETIDSFFQSVMRNLARE 123 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISD 210 ++ + I E + +++ +A S + + N + + ++ +D +SD Sbjct: 124 LELSPNLNI--ELNNVEVLSDAVDSMIEKL--GPNSPVLVWLLDYIDERIADDKRWNVSD 179 Query: 211 IISN--RTALKLIFFFFSYLWRRKIIEKSLWS 240 I + R + RR++ + ++ Sbjct: 180 EIKSFGRNIFDEGYIEKGDGLRRRLRDPNVIH 211 >gi|217979456|ref|YP_002363603.1| UvrD/REP helicase [Methylocella silvestris BL2] gi|217504832|gb|ACK52241.1| UvrD/REP helicase [Methylocella silvestris BL2] Length = 694 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 59/170 (34%), Gaps = 38/170 (22%) Query: 16 LISQTKSEQLLASD---------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66 + EQ A + P + A AGSGKT+ L RV L++ AHP +L Sbjct: 10 YLETLNPEQRRAVEHGVCENDASPAAPLLIIAGAGSGKTNTLAHRVAHLIVNGAHPHRIL 69 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T ++ AAAEM+ RV I ++ + Sbjct: 70 LMTFSRRAAAEMTRRVETIARKAMGDRAGQMTQALR------------------------ 105 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA +++ + + + F I D E S L+ + Sbjct: 106 -----WSGTFHAIGARLLRDYADQIGLDPAFTIHDREDSADLMNLVRHEL 150 >gi|149193951|ref|ZP_01871049.1| HELICASE [Caminibacter mediatlanticus TB-2] gi|149135904|gb|EDM24382.1| HELICASE [Caminibacter mediatlanticus TB-2] Length = 905 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 29/190 (15%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 + A+AGSGKT L R + LLL A+P ++ +T T +A EM R++ + DE Sbjct: 7 LKASAGSGKTFSLANRYISLLLKGANPKEIVAITFTNKSAREMEERIIRYLRDIKK--DE 64 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 ++ + G K + KA +L L+ + + TI +F + I ++F Sbjct: 65 NFLKKLVENTGMS-EKEIIKKAPIILDKFLK--SDIHITTIDSFIQKIARKFSYYGGFDI 121 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215 F + + L+ F + ++ ND++ E L++ + Sbjct: 122 DFDVKSDN------------------------LEAVFSKFVDSLNDKEFEELVNFSKNEE 157 Query: 216 TALKLIFFFF 225 L + + Sbjct: 158 NILSFLESLY 167 >gi|111115437|ref|YP_710055.1| rep helicase, single-stranded DNA-dependent ATPase [Borrelia afzelii PKo] gi|216263384|ref|ZP_03435379.1| ATP-dependent DNA helicase PcrA [Borrelia afzelii ACA-1] gi|110890711|gb|ABH01879.1| rep helicase, single-stranded DNA-dependent ATPase [Borrelia afzelii PKo] gi|215980228|gb|EEC21049.1| ATP-dependent DNA helicase PcrA [Borrelia afzelii ACA-1] Length = 659 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S + + + + + A AGSGKT ++ R+ LLL +L LT T AA E Sbjct: 9 SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQKEILALTFTNKAANE 68 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ +I+ + L V T H Sbjct: 69 MKDRIKKILKSP--------------------------------------LSNLMVSTFH 90 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180 AF +++ +F+I D+ L++E L+++ Sbjct: 91 AFGLFFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLLNKKVSLNSLSNVISLFKN 150 Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219 + + + + + + E L + N D + LI +++SN + ++ Sbjct: 151 GILTLNDLKEEDINIFRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 199 >gi|297588238|ref|ZP_06946881.1| ATP-dependent DNA helicase PcrA [Finegoldia magna ATCC 53516] gi|297573611|gb|EFH92332.1| ATP-dependent DNA helicase PcrA [Finegoldia magna ATCC 53516] Length = 724 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 63/197 (31%), Gaps = 42/197 (21%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 ++L + ++ + + A AGSGKT +L +++ L +L +T T Sbjct: 1 MNLDNLNDRQREAVENTDGPMLILAGAGSGKTKVLTTKIVYCLEKGLCSKYEILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV I+ E + Sbjct: 61 KAAKEMKERVENILQ--------------------------------------EDVDSMW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T HA C I++ +F + D L++E K + N E+K Sbjct: 83 IGTFHAICSRILRVEIERIGFERNFTVYDRADQISLVKECLKDM---GVDPKNVEIKNEI 139 Query: 193 YEILEISNDEDIETLIS 209 I + N E I Sbjct: 140 NTISRLKNAGATEKNID 156 >gi|223983369|ref|ZP_03633555.1| hypothetical protein HOLDEFILI_00835 [Holdemania filiformis DSM 12042] gi|223964541|gb|EEF68867.1| hypothetical protein HOLDEFILI_00835 [Holdemania filiformis DSM 12042] Length = 1076 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 78/188 (41%), Gaps = 21/188 (11%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAA 75 I ++ + + VSA+AG+GKT +LV R++ R+L + ++ +T T+AAA Sbjct: 3 IQWSEEQLKAIHTTDHNILVSASAGAGKTTVLVARLMKRMLEDHISIDRIVAMTFTEAAA 62 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM R+L+ + K+Q ++++ R LI + + T Sbjct: 63 SEMKKRLLQSLND--------------KLQEPDLDEAEAQYCRQQLILL----QSAHIST 104 Query: 136 IHAFCEAIMQQFPLEANITSH--FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 IH+FC +I++ + I D+ ++ ++A M + + Sbjct: 105 IHSFCLSIIKADYALIGLNPARIQHIFDDAALAQMKDQAFTQACRRQMAHDPDSFTTLLQ 164 Query: 194 EILEISND 201 S D Sbjct: 165 TFSSRSED 172 >gi|218130936|ref|ZP_03459740.1| hypothetical protein BACEGG_02538 [Bacteroides eggerthii DSM 20697] gi|217987280|gb|EEC53611.1| hypothetical protein BACEGG_02538 [Bacteroides eggerthii DSM 20697] Length = 1087 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 9/153 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + Sbjct: 4 LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILTQLYGIWK- 62 Query: 93 SDEILSAEITKIQGKKP-----NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 D A + +I+ +K +A L +L +V+TI +F +++M+ Sbjct: 63 EDPASDAYLKRIKEDLASSPLSDKELRRRAGMALQYMLHDYSRFRVETIDSFFQSVMRNL 122 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 E ++ + I E + ++ +A S + + Sbjct: 123 ARELELSPNLNI--ELNNTDVLSDAVDSMIEKL 153 >gi|148244458|ref|YP_001219152.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Candidatus Vesicomyosocius okutanii HA] gi|146326285|dbj|BAF61428.1| DNA helicase II / ATP-dependent DNA helicase PcrA [Candidatus Vesicomyosocius okutanii HA] Length = 717 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 80/211 (37%), Gaps = 46/211 (21%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67 SE + ++ + Q + + ++A + A AGSGKT +L+ R+ L+ + H +L Sbjct: 2 NLSEITNGLNDKQC-QSVTLNNEKNALILAGAGSGKTKVLIHRIAYLITQKDIHIDAILA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+ +++ Sbjct: 61 VTFTNKAATEMCERLSKLLR--------------------------------------HP 82 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + T H+ +++ +A +T +F I D + ++I K+ + +D ++ Sbjct: 83 ITSMWTGTFHSLAHRLLRTHYEQAQLTYNFQILDAQDQFRII----KNLMKENNIDESKF 138 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTAL 218 K + + ++ I + DI S+ Sbjct: 139 PIKKVQQFINNQKNKGIH--LHDIDSSYNYF 167 >gi|307708772|ref|ZP_07645234.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis NCTC 12261] gi|307615138|gb|EFN94349.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis NCTC 12261] Length = 763 Score = 119 bits (299), Expect = 4e-25, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 72/198 (36%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R G P D Sbjct: 59 TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 +++ + + ++ I+ Sbjct: 136 ERSILGTISNAKNDLIDD 153 >gi|331266303|ref|YP_004325933.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis Uo5] gi|326682975|emb|CBZ00592.1| ATP-dependent DNA helicase PcrA [Streptococcus oralis Uo5] Length = 763 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R G P D Sbjct: 59 TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|299145467|ref|ZP_07038535.1| putative UvrD/REP helicase domain protein [Bacteroides sp. 3_1_23] gi|298515958|gb|EFI39839.1| putative UvrD/REP helicase domain protein [Bacteroides sp. 3_1_23] Length = 1056 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 11/176 (6%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + Sbjct: 5 LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63 Query: 93 SDEILSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 D+ A + +I+ + K + A L +L +V+TI +F +++M+ E Sbjct: 64 GDKDSEAYLNRIKEETGKTEQEIREAAGVALSYMLHDYSRFRVETIDSFFQSVMRNLARE 123 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 ++ + I E + +++ +A S + + +L+ N+ + Sbjct: 124 LELSPNLNI--ELNNTEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172 >gi|281423244|ref|ZP_06254157.1| putative UvrD/REP helicase domain protein [Prevotella oris F0302] gi|281402580|gb|EFB33411.1| putative UvrD/REP helicase domain protein [Prevotella oris F0302] Length = 1075 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 6/168 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95 A+AGSGKT L + ++LL+ N H L +T T A EM R+L + S L + Sbjct: 9 ASAGSGKTFTLAVQYIKLLVENPHAYRHTLAVTFTNKATEEMKMRILSQLYGISRGLKES 68 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 E K Q + ++ A + L ++ +V+TI AF + +++ E +T+ Sbjct: 69 KPYLESVKQQTSLDETTIINNASYALSELIHNYSYFRVETIDAFFQTVLRNLARELELTA 128 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + I +Q + ++A + ++ D + L + + + D+D Sbjct: 129 NLRIELNDQQVE--QQAVDQLIENL--DASSLLLSWILDYIHENMDDD 172 >gi|33863357|ref|NP_894917.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313] gi|33640806|emb|CAE21261.1| similar to UvrD/REP helicase [Prochlorococcus marinus str. MIT 9313] Length = 1274 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 12/170 (7%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT L VLRLL H S LL +T T+AAAAE+ R+ + + Sbjct: 25 LLEASAGTGKTFALAHLVLRLLTEGGHQISELLVVTFTEAAAAELRSRIGQRLEHALEGL 84 Query: 94 DEI------LSAEITKIQGKKPNKSDMSKARHLLIT---ILETPGGLKVQTIHAFCEAIM 144 + + ++ Q + N D+S+ + + LE+ + TIH FC + Sbjct: 85 EALDHGATDQPPDLVLKQWLQCNGHDLSQRHQWISSLLVALESLDLADITTIHGFCRRTL 144 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 ++ LE+ + D Q L++E +L + + + Sbjct: 145 RRQALESGAVMDPRLDDSGQQ--LVQEVVHDYWQQQVLTLDAQHLRGLLH 192 >gi|90424770|ref|YP_533140.1| UvrD/REP helicase [Rhodopseudomonas palustris BisB18] gi|90106784|gb|ABD88821.1| ATP-dependent DNA helicase, Rep family [Rhodopseudomonas palustris BisB18] Length = 866 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 73/198 (36%), Gaps = 44/198 (22%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q + ++ +S+ + D V A AG+GKT +L R+ +L + A P +L Sbjct: 30 QAMPAYLAGLNPEQSDAVQTLD--GPVLVLAGAGTGKTRVLTSRIAHILSSGRARPGEIL 87 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM R+ +++ Sbjct: 88 SVTFTNKAAREMKLRLGQMLGQAVE----------------------------------- 112 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 G + T H+ I++ +TS+F + D + +L+++ LA+ +D+ Sbjct: 113 --GMPWLGTFHSIGGRILRYHAELVQLTSNFTVLDTDDQIRLLKQ----LLAADNIDDKR 166 Query: 187 ELKKAFYEILEISNDEDI 204 + +++ + + Sbjct: 167 WPARMLAGLIDGWKNRGL 184 >gi|313887981|ref|ZP_07821659.1| UvrD/REP helicase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845936|gb|EFR33319.1| UvrD/REP helicase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 975 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 75/203 (36%), Gaps = 46/203 (22%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 ++ + + A AG+GKT +L R + ++ N P +L +T TK AA EM R+ Sbjct: 7 QKKAVYTLDKDLSLMAGAGTGKTRVLTSRFINIVKNNISPKHILAITFTKKAAQEMLGRI 66 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + + +L I L V TIH+F Sbjct: 67 SKEL---------------------------------VLNNIEFEERDLNVMTIHSFAHE 93 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-----------ELKKA 191 I+ + I F I +E + L+EEA K + + + + E K Sbjct: 94 IVGNYSFILGINPRFKILEEGEGDYLLEEAVKESFNNFEDERFKNYLLDFKSSPFEEKNN 153 Query: 192 FYEILEISNDEDIETLISDIISN 214 F + N+ +++ DI++ Sbjct: 154 FINLYRDFNNNNLD--FDDILNK 174 >gi|294012022|ref|YP_003545482.1| putative ATP-dependent DNA helicase [Sphingobium japonicum UT26S] gi|292675352|dbj|BAI96870.1| putative ATP-dependent DNA helicase [Sphingobium japonicum UT26S] Length = 1134 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 38/148 (25%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 + A+ + + A G+GKT L RV LL P +L LT + AA EM+ R+ Sbjct: 201 QASAAAHRGEAFLLEAGPGTGKTQTLTARVEGLLAEGVDPRRILLLTFSNKAAGEMAERI 260 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + + + T HAF Sbjct: 261 GRKHKVAA--------------------------------------AAMWIGTFHAFGLD 282 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIE 170 I+++F +E + + D ++ +L+E Sbjct: 283 IIRRFHIELGLPKDPRMMDRTEAVELLE 310 >gi|332168825|gb|AEE18080.1| UvrD/REP helicase [Krokinobacter diaphorus 4H-3-7-5] Length = 795 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 56/157 (35%), Gaps = 37/157 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 ++++ + V A AGSGKT +L R+ L+ +L LT T AA EM Sbjct: 30 NEAQRAPTLHKEGALIVIAGAGSGKTRVLTLRIAYLMSQGVDAFNILSLTFTNKAAREMK 89 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ +I+ + + L + T H+ Sbjct: 90 KRISDIVGSSEAKN-------------------------------------LWMGTFHSI 112 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 I++ + S+F I D + S++LI K Sbjct: 113 FAKILRIEADKLGYPSNFTIYDTQDSQRLISAIIKEL 149 >gi|312867706|ref|ZP_07727912.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis F0405] gi|311096769|gb|EFQ55007.1| ATP-dependent DNA helicase PcrA [Streptococcus parasanguinis F0405] Length = 761 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 72/198 (36%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R ++ A Sbjct: 59 TFTNKAAREMKERAYQLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L S+ LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKSLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDE 153 >gi|254037294|ref|ZP_04871371.1| I DNA and RNA helicase [Escherichia sp. 1_1_43] gi|226840400|gb|EEH72402.1| I DNA and RNA helicase [Escherichia sp. 1_1_43] Length = 1131 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 39/186 (20%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 + A+ + + A G+GKT LV RV LL P +L LT + AA EM+ Sbjct: 193 NAEQDKAAAHRGPAFLLEAGPGTGKTQTLVGRVKGLLSDGVDPRKILLLTFSNKAAGEMA 252 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + T E + + T H+F Sbjct: 253 ERIARVDT--------------------------------------EAAAAIWIGTFHSF 274 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 ++++F E N+ + D ++ +L+E L + N + + +IL Sbjct: 275 GLDLIRRFHDELNLPLDPRLLDRTEAVELLEHEF-PVLDLVHYRNLYDPTRMIADILTGI 333 Query: 200 NDEDIE 205 + E Sbjct: 334 SRAKDE 339 >gi|293369068|ref|ZP_06615665.1| UvrD/REP helicase [Bacteroides ovatus SD CMC 3f] gi|292635836|gb|EFF54331.1| UvrD/REP helicase [Bacteroides ovatus SD CMC 3f] Length = 1056 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 11/176 (6%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + Sbjct: 5 LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63 Query: 93 SDEILSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 D+ A + +I+ + K + A L +L +V+TI +F +++M+ E Sbjct: 64 GDKDSEAYLNRIKEETGKTEQEIREAAGVALSYMLHDYSRFRVETIDSFFQSVMRNLARE 123 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 ++ + I E + +++ +A S + + +L+ N+ + Sbjct: 124 LELSPNLNI--ELNNTEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172 >gi|160886083|ref|ZP_02067086.1| hypothetical protein BACOVA_04090 [Bacteroides ovatus ATCC 8483] gi|156108896|gb|EDO10641.1| hypothetical protein BACOVA_04090 [Bacteroides ovatus ATCC 8483] Length = 1056 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 11/176 (6%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + Sbjct: 5 LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63 Query: 93 SDEILSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 D+ A + +I+ + K + A L +L +V+TI +F +++M+ E Sbjct: 64 GDKDSEAYLNRIKEETGKTEQEIREAAGVALSYMLHDYSRFRVETIDSFFQSVMRNLARE 123 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 ++ + I E + +++ +A S + + +L+ N+ + Sbjct: 124 LELSPNLNI--ELNNTEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172 >gi|164687737|ref|ZP_02211765.1| hypothetical protein CLOBAR_01379 [Clostridium bartlettii DSM 16795] gi|164603511|gb|EDQ96976.1| hypothetical protein CLOBAR_01379 [Clostridium bartlettii DSM 16795] Length = 746 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 56/166 (33%), Gaps = 40/166 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70 ETI++++ + E + A AGSGKT +L R+ L+ +L +T Sbjct: 4 ETIEMLNPAQRE--AVEQTEGPILILAGAGSGKTRVLTTRIGYLMKEKKVKAENILAITF 61 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV E + E Sbjct: 62 TNKAANEMRERVDETLND-------------------------------------EDTSA 84 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T H+ C I+++ + F I D L+++ + Sbjct: 85 MWITTFHSCCVRILRKSINKIGYNRSFVIYDSSDQVTLVKDCLREL 130 >gi|284032499|ref|YP_003382430.1| UvrD/REP helicase [Kribbella flavida DSM 17836] gi|283811792|gb|ADB33631.1| UvrD/REP helicase [Kribbella flavida DSM 17836] Length = 1239 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 85/208 (40%), Gaps = 32/208 (15%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKA 73 +L+ EQ+ +D + +V A AGSGKTH LV RV L+L + P T+ +T T+ Sbjct: 3 ELLDDAAREQIR-TDTDTTLFVEAGAGSGKTHALVDRVTTLVLRDEVPLRTIAAVTFTEK 61 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 A AE+ R+ R L L+ + Sbjct: 62 AGAELRDRLRVEFEKARKGPH-----------------------RALADEALDDLDSASI 98 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN---EELKK 190 T+H+F + I+ P+EA + + DE S EE + S L +LD++ E L Sbjct: 99 GTLHSFAQQILLAHPIEAGLPPLIDVLDEVGSSVAFEE-RWSELQQQLLDDDAIAEPLLL 157 Query: 191 AFYEILEISNDEDIETLIS---DIISNR 215 A +E+ + + L D+I R Sbjct: 158 AMAVGVELKHLRSLARLFGNDWDLIEER 185 >gi|320526748|ref|ZP_08027938.1| putative ATP-dependent nuclease subunit A [Solobacterium moorei F0204] gi|320132716|gb|EFW25256.1| putative ATP-dependent nuclease subunit A [Solobacterium moorei F0204] Length = 1107 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 82/192 (42%), Gaps = 20/192 (10%) Query: 18 SQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTHTKA 73 +Q +EQ +A + + VSA+AG+GKT +LV R+++ + + S +L LT T+A Sbjct: 7 NQLSAEQSVACNSSGMGIVVSASAGAGKTKVLVSRLVKRCIEDNPRVPLSRILALTFTEA 66 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA+EM RV + + L+++ + IQ + + + Sbjct: 67 AASEMKKRVAQELNEIKQLAEKEEPVDQELIQ--------------YIDDQIIALASANI 112 Query: 134 QTIHAFCEAIMQQFPLEANITSHFA--IADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 TI +FC +I++++ + I Q++ + +A L + +E Sbjct: 113 TTIDSFCLSIIKKYYNIIGLDPATTENILSSGQNQNIQRDAFMRALEYAYQISPQETIML 172 Query: 192 FYEILEISNDED 203 +++ D Sbjct: 173 ASYFSSRADEYD 184 >gi|306831468|ref|ZP_07464626.1| ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426253|gb|EFM29367.1| ATP-dependent DNA helicase PcrA [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 771 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 72/198 (36%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ + E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLNGMNDKQVEAVKTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKFVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R P +D Sbjct: 59 TFTNKAAREMRER----------------------AMALNPATADTL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L ++ LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++A + + ++ ++ Sbjct: 136 ERAILGTISNAKNDLLDE 153 >gi|260170417|ref|ZP_05756829.1| ATP-dependent helicase [Bacteroides sp. D2] gi|315918773|ref|ZP_07915013.1| ATP-dependent helicase [Bacteroides sp. D2] gi|313692648|gb|EFS29483.1| ATP-dependent helicase [Bacteroides sp. D2] Length = 1056 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 11/176 (6%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + Sbjct: 5 LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63 Query: 93 SDEILSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 D+ A + +I+ + K + A L +L +V+TI +F +++M+ E Sbjct: 64 GDKDSEAYLNRIKEETGKTEQEIREAAGVALSYMLHDYSRFRVETIDSFFQSVMRNLARE 123 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 ++ + I E + +++ +A S + + +L+ N+ + Sbjct: 124 LELSPNLNI--ELNNTEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172 >gi|83816263|ref|YP_444681.1| ATP-dependent DNA helicase pcrA [Salinibacter ruber DSM 13855] gi|83757657|gb|ABC45770.1| ATP-dependent DNA helicase pcrA [Salinibacter ruber DSM 13855] Length = 786 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 58/164 (35%), Gaps = 41/164 (25%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70 +D ++ + E + + A GSGKT L R+ LL A A P +L LT Sbjct: 24 RILDGLNDKQRE--AVTTTEGPVMIIAGPGSGKTRALTHRIAYLLAAGKAQPRDILALTF 81 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV ++ + G Sbjct: 82 TNKAANEMQERVEALVGDDAR--------------------------------------G 103 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + V T H+ +++ + + F+I D SK+LI + K Sbjct: 104 MWVGTFHSSFARLLRMEGDKIGYSEDFSIYDTADSKRLIRQQMK 147 >gi|268316024|ref|YP_003289743.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252] gi|262333558|gb|ACY47355.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252] Length = 681 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 75/201 (37%), Gaps = 41/201 (20%) Query: 13 TIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 T+D Q +Q + + V A AG+GKT LV RV L+ P ++ LT T Sbjct: 19 TVDYAGQLNPQQYAVVTAGGGPILVVAGAGTGKTRTLVYRVAYLVETGTPPEEIVLLTFT 78 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + AA EM R + +L ++QG Sbjct: 79 RRAAREMLAR-----------AAALLDGRCERVQG------------------------- 102 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS--TLASIMLDNNEELK 189 T HAFC +++++ S+F + D + +I+ + + S ++ Sbjct: 103 --GTFHAFCLGLLRRYAGRLGYPSNFTVLDASDAADVIDLLRTAHGLHRSGRRFPRKQTI 160 Query: 190 KAFYEILEISNDEDIETLISD 210 +A + D D+ET++ Sbjct: 161 QAIFSAAASHPDADLETILEA 181 >gi|149012920|ref|ZP_01833833.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP19-BS75] gi|147763209|gb|EDK70149.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP19-BS75] Length = 218 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|29346464|ref|NP_809967.1| ATP-dependent helicase [Bacteroides thetaiotaomicron VPI-5482] gi|29338360|gb|AAO76161.1| ATP-dependent helicase [Bacteroides thetaiotaomicron VPI-5482] Length = 1057 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 74/175 (42%), Gaps = 9/175 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + Sbjct: 5 LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYGIQIG 64 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHL-LITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 + + + K + ++ +A + L +L +V+TI +F +++M+ E Sbjct: 65 DKDSEAYLNRIKEETKKTEQEIREAAGIALGYMLHDYSRFRVETIDSFFQSVMRNLAREL 124 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 ++ + I E + +++ +A S + + +L+ N+ + Sbjct: 125 ELSPNLNI--ELNNAEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172 >gi|117926757|ref|YP_867374.1| ATP-dependent DNA helicase Rep [Magnetococcus sp. MC-1] gi|117610513|gb|ABK45968.1| ATP-dependent DNA helicase, Rep family [Magnetococcus sp. MC-1] Length = 673 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 52/162 (32%), Gaps = 35/162 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L ++ + V A AGSGKT +L +R+ ++ A P +L +T T A Sbjct: 6 LHHLNAPQRQAVTTLDGPLMVLAGAGSGKTRVLTRRLAWIIQQQQASPEEVLAVTFTNKA 65 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM +RV ++ + + Sbjct: 66 AKEMRNRVQALLG----------------------------------LDAPAQAHRFWIG 91 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++Q+ F I D ++L + + Sbjct: 92 TFHGMSARMLRQYADRLGFERDFTILDSSDQERLFKRLCEEL 133 >gi|317476247|ref|ZP_07935498.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA] gi|316907658|gb|EFV29361.1| UvrD/REP helicase [Bacteroides eggerthii 1_2_48FAA] Length = 1087 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 7/152 (4%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW--- 89 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + Sbjct: 4 LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILTQLYGIWKE 63 Query: 90 SHLSDEILSAEITKIQGKKPNKSDM-SKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 H SD L + + ++ +A L +L +V+TI +F +++M+ Sbjct: 64 DHASDAYLKRIKEDLASSPLSDKELRRRAGMALQYMLHDYSRFRVETIDSFFQSVMRNLA 123 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 E ++ + I E + ++ +A S + + Sbjct: 124 RELELSPNLNI--ELNNTDVLSDAVDSMIEKL 153 >gi|224023774|ref|ZP_03642140.1| hypothetical protein BACCOPRO_00490 [Bacteroides coprophilus DSM 18228] gi|224016996|gb|EEF75008.1| hypothetical protein BACCOPRO_00490 [Bacteroides coprophilus DSM 18228] Length = 360 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 78/176 (44%), Gaps = 11/176 (6%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L + ++LL+ + +L +T T A EM R+L + + Sbjct: 61 LVYKASAGSGKTFTLAVQYIKLLIEDTSAYRKILAVTFTNKATTEMKKRILYQLYGIATA 120 Query: 93 SDEILS--AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 S E EI K GK ++ + AR L I+ +++TI +F +++M+ E Sbjct: 121 SPESEGYLKEILKTSGKSVDEIRQA-ARTALKNIIHDYSRFRIETIDSFFQSVMRNLSRE 179 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 + ++ I E + +++ +A S + + + Y +LE + + Sbjct: 180 LELGANLNI--ELNNTEVLSDAVDSMIEKL-----DRRSPVLYWLLEYIEERIADD 228 >gi|317502900|ref|ZP_07960997.1| ATP-dependent helicase [Prevotella salivae DSM 15606] gi|315665983|gb|EFV05553.1| ATP-dependent helicase [Prevotella salivae DSM 15606] Length = 1075 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 6/188 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95 A+AGSGKT L + + LL+ N L +T T A EM R+L + S L++ Sbjct: 9 ASAGSGKTFTLAVQYITLLVENPQAYRHTLAVTFTNKATEEMKMRILSQLYGISVGLNES 68 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 E K K+ ++ A + L ++ +V+TI AF + +++ E +T+ Sbjct: 69 KPYLECVKQLSGLDEKTIIANAGYALRELIHHYSYFRVETIDAFFQTVLRNLARELELTA 128 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIIS-N 214 + I ++ + ++A + + D++ L I E +D+ +I+ I Sbjct: 129 NLRIELNDEQVE--QQAVDQLIEDLN-DSSLLLSWILDYIQENIDDDKSWNVIAQIKQFG 185 Query: 215 RTALKLIF 222 R LK + Sbjct: 186 RNILKDYY 193 >gi|312621145|ref|YP_004022758.1| uvrd/rep helicase [Caldicellulosiruptor kronotskyensis 2002] gi|312201612|gb|ADQ44939.1| UvrD/REP helicase [Caldicellulosiruptor kronotskyensis 2002] Length = 756 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 46/211 (21%), Positives = 89/211 (42%), Gaps = 9/211 (4%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAA 75 S Q ++ A AG+GKT +LV+ +++ L N A S + +T T A Sbjct: 13 SPLTETQQNILKVNFPFYLKAGAGTGKTELLVELIIKCLNENPKASISNFVVITFTNKAT 72 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +E+ R++E + L+ + + N++ M++ ++ L V T Sbjct: 73 SEVKRRLVERLYFDYSLNHK---KLSSLSSLLADNRNIMNRQEDEKRKFVDLTSMLNVYT 129 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLD--NNEELKKAF 192 IH FCE I++Q+ I+ F I + ++I +A + + L+ + L + Sbjct: 130 IHGFCEIILRQYGYLIGISPKFEIKSVTWKLNEIIRKAIDNYAENEFLNVLPSYRLHQLV 189 Query: 193 YEILEISNDEDIETLISDIISN-RTALKLIF 222 + E +++ E DI + R + F Sbjct: 190 RTLYEECDNKGDEITEKDIKNKFRKNQEQYF 220 >gi|167762884|ref|ZP_02435011.1| hypothetical protein BACSTE_01248 [Bacteroides stercoris ATCC 43183] gi|167699224|gb|EDS15803.1| hypothetical protein BACSTE_01248 [Bacteroides stercoris ATCC 43183] Length = 1151 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 11/156 (7%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + Sbjct: 28 LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILTQLYGIWKE 87 Query: 93 SDEILS--AEITKIQGKKP------NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + I + KKP ++ +A L +L +V+TI +F +++M Sbjct: 88 DPASDAYLKRIKEDLAKKPETASLSDRELRQRAGMALQYMLHDYSRFRVETIDSFFQSVM 147 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 + E ++ + I E + +++ +A S + + Sbjct: 148 RNLARELELSPNLNI--ELNNAEVLSDAVDSMIEKL 181 >gi|115524150|ref|YP_781061.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53] gi|115518097|gb|ABJ06081.1| ATP-dependent DNA helicase, Rep family [Rhodopseudomonas palustris BisA53] Length = 846 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 69/191 (36%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 +S EQ A + V A AG+GKT +L R+ +L + A P +L +T T Sbjct: 38 YLSGLNPEQSEAVETLEGPVLVLAGAGTGKTRVLTSRIAHILSSGRARPGEILSVTFTNK 97 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ +++ G + Sbjct: 98 AAREMKLRLGQMLGQAVE-------------------------------------GMPWL 120 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ I++ + S+F + D + +L+++ LA+ +D+ + Sbjct: 121 GTFHSIGGRILRYHAELVQLKSNFTVLDTDDQIRLLKQ----LLAADNIDDKRWPARMLA 176 Query: 194 EILEISNDEDI 204 +++ + + Sbjct: 177 GLIDGWKNRGL 187 >gi|292670877|ref|ZP_06604303.1| ATP-dependent DNA helicase PcrA [Selenomonas noxia ATCC 43541] gi|292647498|gb|EFF65470.1| ATP-dependent DNA helicase PcrA [Selenomonas noxia ATCC 43541] Length = 747 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 64/194 (32%), Gaps = 44/194 (22%) Query: 14 IDLISQTKS-EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +DL +Q + + A AGSGKT +L R+ LL P +L +T T Sbjct: 1 MDLFQGLNEPQQRAVACLEGPLLIVAGAGSGKTRVLTFRIANLLEHAVPPYRILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV +I ++ + Sbjct: 61 KAAREMRDRVDTLIG--------------------------------------DSARDVW 82 Query: 133 VQTIHAFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+FC ++ +F I D +K LI E L + +D A Sbjct: 83 LSTFHSFCARFLRMEIEHLGTYAKNFVIYDASDTKGLIREC----LKELNIDEKHTAPGA 138 Query: 192 FYEILEISNDEDIE 205 + + + ++ Sbjct: 139 VQSHISDAKNRLLD 152 >gi|110801811|ref|YP_697750.1| helicase/exonuclease [Clostridium perfringens SM101] gi|110682312|gb|ABG85682.1| helicase/exonuclease [Clostridium perfringens SM101] Length = 870 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 91/212 (42%), Gaps = 49/212 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAA 74 +I+ + +Q + ++ + + A+AG+GKT+ L +RV ++ PS +LC+T T A Sbjct: 1 MINLNEEQQKVVNEQKNNIILLASAGTGKTNTLAKRVTSIIKNGNSKPSEILCITFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 EMS RV++I+ + + ++ Sbjct: 61 CKEMSDRVMKIVGGEAK--------------------------------------DITIR 82 Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK---- 189 T H+FC +++ + +I S F I DE+ +++I + S ++ N +++ Sbjct: 83 TFHSFCFDVVRTYAKRNTDIFSDFTIFDEDDCREVISKLSYYYATSNLMATNMQIQRVID 142 Query: 190 -----KAFYEILEISNDEDIETLISDIISNRT 216 +A E LE ++ +T+I +I R Sbjct: 143 FIKVERARIETLEDRVLDEYKTVIDEIFKFRE 174 >gi|237720843|ref|ZP_04551324.1| ATP-dependent helicase [Bacteroides sp. 2_2_4] gi|229449678|gb|EEO55469.1| ATP-dependent helicase [Bacteroides sp. 2_2_4] Length = 1056 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 76/176 (43%), Gaps = 11/176 (6%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L ++L++ N +L +T T A AEM R+L + + Sbjct: 5 LVYKASAGSGKTFTLAVEYIKLIILNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63 Query: 93 SDEILSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 D+ A + +I+ + K + A L +L +V+TI +F +++M+ E Sbjct: 64 GDKDSEAYLNRIKEETGKTEQEIREAAGVALSYMLHDYSRFRVETIDSFFQSVMRNLARE 123 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 ++ + I E + +++ +A S + + +L+ N+ + Sbjct: 124 LELSPNLNI--ELNNTEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172 >gi|229496641|ref|ZP_04390355.1| ATP-dependent DNA helicase PcrA [Porphyromonas endodontalis ATCC 35406] gi|229316538|gb|EEN82457.1| ATP-dependent DNA helicase PcrA [Porphyromonas endodontalis ATCC 35406] Length = 809 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 56/165 (33%), Gaps = 38/165 (23%) Query: 13 TIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 ID + Q A A V A AGSGKT +L ++ LL P L+ LT T Sbjct: 1 MIDYEKELNPAQAEAVLYDDGPALVIAGAGSGKTRVLTYKLAHLLEEGYDPHKLMALTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ + + Sbjct: 61 NKAAREMLSRVESMVGSRDTF-------------------------------------RM 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 K+ T H+ ++ + T +F+I D SK L++ K Sbjct: 84 KLGTFHSVFSRYLRIYAPLLGFTPNFSIYDTSDSKSLVKRIVKDM 128 >gi|126695666|ref|YP_001090552.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9301] gi|126542709|gb|ABO16951.1| UvrD/REP helicase [Prochlorococcus marinus str. MIT 9301] Length = 802 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 19/165 (11%) Query: 23 EQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSH 80 +QL A V A AGSGKT L R+ L+ N P +L +T T AA EM Sbjct: 15 QQLQAVKHVYGPLLVVAGAGSGKTKALTHRIANLIEGNSIDPYNILAVTFTNKAAKEMKG 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ ++ + K + ++++ + R L + T H+ Sbjct: 75 RLEVLLAQELAFNQFGQPWTTLKEIDQNQLRTNVHQER---------LQNLWIGTFHSLF 125 Query: 141 EAIMQQFPLEANITS-------HFAIADEEQSKKLIEEAKKSTLA 178 +++ + +E F+I DE S+ L++E ++ Sbjct: 126 SRLLR-YDIEKYTDPEGLKWTRQFSIYDETDSQTLVKEIISQDMS 169 >gi|329955053|ref|ZP_08296034.1| UvrD/REP helicase [Bacteroides clarus YIT 12056] gi|328526343|gb|EGF53358.1| UvrD/REP helicase [Bacteroides clarus YIT 12056] Length = 1128 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 9/153 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + Sbjct: 4 LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILTQLYGIWK- 62 Query: 93 SDEILSAEITKIQGKKP-----NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 +D A + +I+ +K +A L +L +V+TI +F +++M+ Sbjct: 63 ADPASDAYLKRIKEDLNSSSLSDKELRQRAGMALQYMLHDYSRFRVETIDSFFQSVMRNL 122 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 E ++ + I E + ++ +A S + + Sbjct: 123 ARELELSPNLNI--ELNNADVLSDAVDSMIEKL 153 >gi|307709461|ref|ZP_07645918.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK564] gi|307619775|gb|EFN98894.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK564] Length = 763 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 71/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 +++ + + ++ I+ Sbjct: 136 ERSILGTISNAKNDLIDD 153 >gi|294674328|ref|YP_003574944.1| UvrD/REP family ATP-dependent DNA helicase [Prevotella ruminicola 23] gi|294472390|gb|ADE81779.1| ATP-dependent DNA helicase, UvrD/REP family [Prevotella ruminicola 23] Length = 1075 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 46/214 (21%), Positives = 89/214 (41%), Gaps = 7/214 (3%) Query: 27 ASDPTRSAWV-SANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLE 84 ++ +S V A+AGSGKT L +RLL+ N +L +T T A EM R+L Sbjct: 2 VNETQKSLTVYKASAGSGKTFTLATEYIRLLVENPQSYRNILAVTFTNKATEEMKMRILS 61 Query: 85 II-TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + W L + + + + + +A L + +V+TI F +++ Sbjct: 62 QLYGIWKQLPESDNYLQNIQTKTGLKPEVISERAGIALNNLTHNYNYFRVETIDTFFQSV 121 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ E ++T++ I + +EE L + + L+ I+E +D+ Sbjct: 122 LRNMARELDLTTNLRIGLNDYQ---VEELAVDQLIEDLTTTDVMLQWILKYIMENISDDK 178 Query: 204 IETLISDIIS-NRTALKLIFFFFSYLWRRKIIEK 236 +I+ I + K + S +K+ E+ Sbjct: 179 SWNVIAQIKKFGQNIFKDYYKEVSLTLEQKMGEE 212 >gi|289705135|ref|ZP_06501539.1| UvrD/REP helicase [Micrococcus luteus SK58] gi|289558163|gb|EFD51450.1| UvrD/REP helicase [Micrococcus luteus SK58] Length = 1176 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 68/172 (39%), Gaps = 23/172 (13%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63 +S ++ + + L T+ + + + P V A AGSGKT + RV+ L+ P Sbjct: 22 HSPEDIAARLRLPPPTQEQAEVVTAPLTPRLVLAGAGSGKTATMADRVVWLVANGLVRPD 81 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L +T T+ AA E++ R+ + A E I G D+ Sbjct: 82 EVLGVTFTRKAAGELAERINGRVDALLRSGLE--------IPGFDGEPEDL--------- 124 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G V T H++ A+++ L + + + + +L+ +S Sbjct: 125 -----GRASVSTYHSYAGALVRDHGLRIGVEPEARLLGDADAHRLMGAVVRS 171 >gi|325062285|gb|ADY65975.1| ATP-dependent DNA helicase [Agrobacterium sp. H13-3] Length = 688 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 59/170 (34%), Gaps = 38/170 (22%) Query: 16 LISQTKSEQLLASD---------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66 + + +Q A + + A AGSGKT+ L RV L++ A P +L Sbjct: 5 YLDKLNEQQRKAVEHGVGLSGGHTAGPLLIIAGAGSGKTNTLAHRVAHLIVNGADPRRIL 64 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T ++ AA+EMS RV I + L+ + Sbjct: 65 LMTFSRRAASEMSRRVERICKQVIGANAGALTDAM------------------------- 99 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++ + + + F I D E S L+ A+ Sbjct: 100 ----AWSGTFHGIGARLLRIYAEQIGLDVDFTIHDREDSADLMNLARHEL 145 >gi|298387758|ref|ZP_06997309.1| UvrD/REP helicase domain-containing protein [Bacteroides sp. 1_1_14] gi|298259614|gb|EFI02487.1| UvrD/REP helicase domain-containing protein [Bacteroides sp. 1_1_14] Length = 1057 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 71/175 (40%), Gaps = 9/175 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + Sbjct: 5 LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYGIQIG 64 Query: 93 S-DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 D K + K+ + A L +L +V+TI +F +++M+ E Sbjct: 65 DKDSEAYLNRIKEETKRTEQEIREAAGIALGYMLHDYSRFRVETIDSFFQSVMRNLAREL 124 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 ++ + I E + +++ +A S + + +L+ N+ + Sbjct: 125 ELSPNLNI--ELNNAEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172 >gi|222055070|ref|YP_002537432.1| UvrD/REP helicase [Geobacter sp. FRC-32] gi|221564359|gb|ACM20331.1| UvrD/REP helicase [Geobacter sp. FRC-32] Length = 678 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 38/165 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL + + + V A AGSGKT ++ R+ LLL P+ +L +T T Sbjct: 1 MLDLFNLNPQQLAAVKHTEGALLVLAGAGSGKTGVITYRIAHLLLDKKVPPANILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ + GL Sbjct: 61 NKAAKEMRERVDGLVGRAACK-------------------------------------GL 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I+++ +F+I LI++ + Sbjct: 84 IISTFHSLGVRILRRDIERLGYKKNFSIYSTTDQIGLIKQIMREV 128 >gi|222153135|ref|YP_002562312.1| ATP-dependent DNA helicase [Streptococcus uberis 0140J] gi|222113948|emb|CAR42197.1| putative ATP-dependent DNA helicase [Streptococcus uberis 0140J] Length = 755 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 70/203 (34%), Gaps = 50/203 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ + + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLNGMND--RQAEAVETTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKCVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + + + Sbjct: 59 TFTNKAAREMRER---------------------ALLLNPATQETL-------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L ++ LD + Sbjct: 84 ----IATFHSMCVRILRREADHIGYNRNFTIVDPGEQRTLM----KRILKNLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIETLISDI 211 +++ + + ++ L+ ++ Sbjct: 136 ERSILGTISNAKND----LLDEM 154 >gi|322376782|ref|ZP_08051275.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M334] gi|321282589|gb|EFX59596.1| ATP-dependent DNA helicase PcrA [Streptococcus sp. M334] Length = 763 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 74/198 (37%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ +++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNERQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + P+ D Sbjct: 59 TFTNKAAREMKERAYNL----------------------NPSTQDCL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 +++ + + ++ I+ Sbjct: 136 ERSILGTISNAKNDLIDD 153 >gi|253568133|ref|ZP_04845544.1| ATP-dependent helicase [Bacteroides sp. 1_1_6] gi|251842206|gb|EES70286.1| ATP-dependent helicase [Bacteroides sp. 1_1_6] Length = 1057 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 71/175 (40%), Gaps = 9/175 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + Sbjct: 5 LVYKASAGSGKTFTLAVEYIKLLVLNPRAYRQILAVTFTNKATAEMKERILSQLYGIQIG 64 Query: 93 S-DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 D K + K+ + A L +L +V+TI +F +++M+ E Sbjct: 65 DKDSEAYLNRIKEETKRTEQEIREAAGIALGYMLHDYSRFRVETIDSFFQSVMRNLAREL 124 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 ++ + I E + +++ +A S + + +L+ N+ + Sbjct: 125 ELSPNLNI--ELNNAEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172 >gi|83719895|ref|YP_443754.1| ATP-dependent DNA helicase Rep [Burkholderia thailandensis E264] gi|83653720|gb|ABC37783.1| ATP-dependent DNA helicase Rep [Burkholderia thailandensis E264] Length = 848 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ +SE + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 157 GLNPAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 214 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 215 AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 249 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 250 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 286 >gi|34540779|ref|NP_905258.1| ATP-dependent DNA helicase UvrD/PcrA/Rep family [Porphyromonas gingivalis W83] gi|34397093|gb|AAQ66157.1| ATP-dependent DNA helicase UvrD/PcrA/Rep Family [Porphyromonas gingivalis W83] Length = 765 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 58/163 (35%), Gaps = 39/163 (23%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 D +S Q A A V A AGSGKT +LV ++L L+ + P+ L+ LT T Sbjct: 4 DYLSSLNDSQKAAVLYNDGPALVIAGAGSGKTRVLVYKLLHLIHSGYDPARLMALTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV I + +++ Sbjct: 64 AAKEMKERVASEIGPAA--------------------------------------YRIQM 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I+++ T F+I D +K L+ K Sbjct: 86 GTFHSVFSRILRENATHLGYTRDFSIYDTNDTKSLLRHVMKRM 128 >gi|85708952|ref|ZP_01040018.1| DNA and RNA helicase [Erythrobacter sp. NAP1] gi|85690486|gb|EAQ30489.1| DNA and RNA helicase [Erythrobacter sp. NAP1] Length = 771 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 61/186 (32%), Gaps = 42/186 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78 ++ + A AG+GKT L R+ L+ A PS +LC+T T AA EM Sbjct: 26 NPPQREAVLTTEGPVLMLAGAGTGKTAALTSRLAHLVATRRAWPSQILCVTFTNKAAREM 85 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + + T H+ Sbjct: 86 RERVAGHLGPGAEGIP-------------------------------------WLGTFHS 108 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C ++++ + ++ I D + +L+++ + +D + +++ Sbjct: 109 ICAKMLRRHAELVGLEQNYTIIDTDDQLRLLKQ----LINDNGVDEKRWPARQLAGLIDR 164 Query: 199 SNDEDI 204 + + Sbjct: 165 WKNRGL 170 >gi|225856731|ref|YP_002738242.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae P1031] gi|225724965|gb|ACO20817.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae P1031] Length = 763 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 71/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A + Sbjct: 59 TFTNKAAREMKERAYSLNPATQNCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|291295632|ref|YP_003507030.1| Exodeoxyribonuclease V [Meiothermus ruber DSM 1279] gi|290470591|gb|ADD28010.1| Exodeoxyribonuclease V [Meiothermus ruber DSM 1279] Length = 833 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 60/161 (37%), Gaps = 31/161 (19%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78 EQ A + V A AG+GKTH++ R L L+ P ++ +T T+ AA E+ Sbjct: 3 LNPEQRAAVEHDGPVAVEAGAGTGKTHLMAHRYLWLVEHKGFSPLEIVAVTFTEKAAREL 62 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ P + +A + T+H+ Sbjct: 63 RARVRRVLQGQV-----------------APERVYEVEA-------------APIGTLHS 92 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 I Q++P EA + F I DE +S + E L Sbjct: 93 LAARICQEYPEEAGVHPAFRILDEVESALWLSEHLDEALEE 133 >gi|148989130|ref|ZP_01820520.1| methionine aminopeptidase [Streptococcus pneumoniae SP6-BS73] gi|147925353|gb|EDK76431.1| methionine aminopeptidase [Streptococcus pneumoniae SP6-BS73] Length = 763 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDSGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|187924915|ref|YP_001896557.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN] gi|187716109|gb|ACD17333.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN] Length = 720 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 59/168 (35%), Gaps = 38/168 (22%) Query: 17 ISQTKSEQLLASD--------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 +++ Q A D P + V A AGSGKT+ L RV L++ A P +L L Sbjct: 28 LAKLNDAQREAVDYGADTPTAPPGALLVIAGAGSGKTNTLAHRVANLVVKGADPRRILLL 87 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T ++ AA EM+ RV I A L Sbjct: 88 TFSRRAALEMTRRVTRIAGA------------------------------ALGSRAALAQ 117 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G T H+ +++++ + F I D E S L+ + Sbjct: 118 GLTWSGTFHSVGARLLREYADLIGLAPAFTINDREDSADLMNLVRHEL 165 >gi|76787976|ref|YP_329845.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae A909] gi|77407064|ref|ZP_00784070.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae H36B] gi|77413012|ref|ZP_00789214.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 515] gi|76563033|gb|ABA45617.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae A909] gi|77160910|gb|EAO72019.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 515] gi|77174333|gb|EAO77196.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae H36B] Length = 759 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 42/168 (25%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + I ++ ++E + +D + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLIIGMNDKQAEAVQTTD--GPLLIMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R P D Sbjct: 59 TFTNKAAREMRER----------------------AIALNPATQDTL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ +F I D + + L++ K Sbjct: 84 ----IATFHSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQL 127 >gi|207724952|ref|YP_002255349.1| atp-dependent dna helicase II protein [Ralstonia solanacearum MolK2] gi|206590179|emb|CAQ37140.1| atp-dependent dna helicase II protein [Ralstonia solanacearum MolK2] Length = 710 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 60/171 (35%), Gaps = 31/171 (18%) Query: 15 DLISQTKSEQLLASDP---------TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 D ++Q +Q A + T V A AGSGKT L RV L+ A P + Sbjct: 15 DYLAQLNDQQRQAVEFGVSGADAAETGPLLVLAGAGSGKTQTLGWRVAHLVAHGADPQRI 74 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L LT ++ AA+E+S R ++ + SA T Q P Sbjct: 75 LLLTFSRRAASELSSRAGHLLARAMQGNTGTRSAAGTTYQTALP---------------- 118 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++++ + F I D S L+ + Sbjct: 119 ------WAGTFHGIGARLLREYAERIGLAPDFTIHDRSDSADLLNVVRHEL 163 >gi|168483162|ref|ZP_02708114.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC1873-00] gi|172043466|gb|EDT51512.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC1873-00] Length = 763 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 71/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ S + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GSLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|83643128|ref|YP_431563.1| exodeoxyribonuclease V subunit beta [Hahella chejuensis KCTC 2396] gi|83631171|gb|ABC27138.1| exodeoxyribonuclease V, beta subunit [Hahella chejuensis KCTC 2396] Length = 1181 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 3/151 (1%) Query: 35 WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT+ + LRLLL +L +T T+AA E+ R+ + I Sbjct: 16 LIEASAGTGKTYTITTLYLRLLLERQLDVRQILVVTFTRAATEELRTRIRQRIREVMQTL 75 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 +I + + A LL L + TIH FC+ +Q E+ + Sbjct: 76 QAPPETDIAEWLQPWRDPERNGDALALLQQALLNMDEASIFTIHGFCQRALQDNAFESGL 135 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 F + +E L+++A + T + + Sbjct: 136 --LFDLRLQEDLGPLLQQAAEDTWRKLFYPD 164 >gi|212710202|ref|ZP_03318330.1| hypothetical protein PROVALCAL_01261 [Providencia alcalifaciens DSM 30120] gi|212687201|gb|EEB46729.1| hypothetical protein PROVALCAL_01261 [Providencia alcalifaciens DSM 30120] Length = 675 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 65/183 (35%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q V A AGSGKT ++ ++ L+ P + +T T AA EM Sbjct: 4 NPSQQQAVEYVDGPCLVLAGAGSGKTRVITNKIAHLIRHCGYQPRQIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR L+ + T H Sbjct: 64 KERVGQTLGK--------------------------KEARGLI-----------ISTFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ I ++F++ D++ L++E L ++ + L++ I Sbjct: 87 LGLEIIKREYKALGIKANFSLFDDQDQMALLKELTFDLLE----EDKDLLQQLISAISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|307718485|ref|YP_003874017.1| hypothetical protein STHERM_c07940 [Spirochaeta thermophila DSM 6192] gi|306532210|gb|ADN01744.1| hypothetical protein STHERM_c07940 [Spirochaeta thermophila DSM 6192] Length = 665 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 73/219 (33%), Gaps = 55/219 (25%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID ++ Q A + A AGSGKT ++ R+ +L ++ +L LT T Sbjct: 3 IDYRAELNPAQYEAVTTIDGPLLIIAGAGSGKTRVITYRIAYMLDSHIPQKAILALTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV + L Sbjct: 63 KAAREMWERVRTLTGK--------------------------------------KLTNLT 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T H+F I+++ F+I D + K LI++ + + L+ + Sbjct: 85 VGTFHSFGAQILREHIHLLGYRPTFSIYDTQDQKALIKQC----IQEVGLNPD------- 133 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRR 231 ++N I TLIS I + R + ++ Sbjct: 134 -----LANISAIRTLISAIKTGRAGWNAENEVYRPVYEE 167 >gi|295697356|ref|YP_003590594.1| ATP-dependent DNA helicase PcrA [Bacillus tusciae DSM 2912] gi|295412958|gb|ADG07450.1| ATP-dependent DNA helicase PcrA [Bacillus tusciae DSM 2912] Length = 755 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 45/191 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHT 71 + ++ + E + ++ + A AGSGKT +L RV L+ A P +L +T T Sbjct: 14 LLAGLNDAQREAVRQTE--GPLLILAGAGSGKTRVLTHRVAYLVATRKAPPWGILAITFT 71 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ + + Sbjct: 72 NKAAREMRERIGRLVGPEAE--------------------------------------EI 93 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H++C ++++ T F+I D A K L + LD + + Sbjct: 94 WVSTFHSYCVRVLRRHIEPLGFTRSFSILDASDQTT----AVKQVLGEMNLDTKKFDPRR 149 Query: 192 FYEILEISNDE 202 + +E Sbjct: 150 MAGAISALKNE 160 >gi|189501505|ref|YP_001957222.1| UvrD/REP helicase [Candidatus Amoebophilus asiaticus 5a2] gi|189496946|gb|ACE05493.1| UvrD/REP helicase [Candidatus Amoebophilus asiaticus 5a2] Length = 757 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 41/164 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +D++++ + + A + + A AG+GKT +L R+ L+ P +L LT T Sbjct: 5 LDMLNEQQRQ--AAVNTEGPCMIIAGAGAGKTKVLTTRIAYLIQEKKVDPFKILALTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ ++I + + Sbjct: 63 KAANEMKKRIEQVIGPAAK--------------------------------------NVW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ +++ + S F+I D SK L++ K Sbjct: 85 LGTFHSCFAKLLRIEADKIGYPSSFSIYDTTDSKSLLKSIIKEM 128 >gi|281358424|ref|ZP_06244905.1| UvrD/REP helicase [Victivallis vadensis ATCC BAA-548] gi|281315047|gb|EFA99079.1| UvrD/REP helicase [Victivallis vadensis ATCC BAA-548] Length = 679 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 37/157 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 + A V A AG+GKT ++ R+ +L P +L +T T AA EM Sbjct: 11 NPEQASAAGTVNGPVLVLAGAGTGKTRVITFRIAYMLACGIPPQMILGMTFTNKAAREMR 70 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ +++ + +++ L T H+F Sbjct: 71 ERLAQLV------------------------QPQIARKVTL-------------GTFHSF 93 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C I+++ + F IADE + ++++A Sbjct: 94 CIKILRRDIAKLGYLPSFTIADESDQQGVLKQAAGQL 130 >gi|126697900|ref|YP_001086797.1| ATP-dependent DNA helicase [Clostridium difficile 630] gi|254973999|ref|ZP_05270471.1| ATP-dependent DNA helicase [Clostridium difficile QCD-66c26] gi|255099501|ref|ZP_05328478.1| ATP-dependent DNA helicase [Clostridium difficile QCD-63q42] gi|255305356|ref|ZP_05349528.1| ATP-dependent DNA helicase [Clostridium difficile ATCC 43255] gi|255313045|ref|ZP_05354628.1| ATP-dependent DNA helicase [Clostridium difficile QCD-76w55] gi|255515802|ref|ZP_05383478.1| ATP-dependent DNA helicase [Clostridium difficile QCD-97b34] gi|255654387|ref|ZP_05399796.1| ATP-dependent DNA helicase [Clostridium difficile QCD-23m63] gi|306519010|ref|ZP_07405357.1| ATP-dependent DNA helicase [Clostridium difficile QCD-32g58] gi|115249337|emb|CAJ67150.1| DNA helicase, UvrD/REP type [Clostridium difficile] Length = 754 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 64/190 (33%), Gaps = 43/190 (22%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 ++L + +++ + A AGSGKT +L R+ L+ +L +T T Sbjct: 1 MNLDTLNPAQREAVEKTEGPVLILAGAGSGKTKVLTTRIAYLIEDKGVQAPNILAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV + I P D + Sbjct: 61 KAANEMRERVEQNIG---------------------PETKD-----------------MW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ C I+++ + F I D L+++ L + L + KA Sbjct: 83 ISTFHSCCVRILRKDINKIGYNRSFVIYDSADQVTLVKDC----LKELNLSDKVFEPKAV 138 Query: 193 YEILEISNDE 202 + + D+ Sbjct: 139 ISAISGAKDK 148 >gi|77409591|ref|ZP_00786269.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae COH1] gi|77171802|gb|EAO74993.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae COH1] Length = 759 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 42/168 (25%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + I ++ ++E + +D + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLIIGMNDKQAEAVQTTD--GPLLIMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R P D Sbjct: 59 TFTNKAAREMRER----------------------AIALNPATQDTL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ +F I D + + L++ K Sbjct: 84 ----IATFHSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQL 127 >gi|25011258|ref|NP_735653.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae NEM316] gi|23095682|emb|CAD46868.1| Unknown [Streptococcus agalactiae NEM316] Length = 759 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 42/168 (25%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + I ++ ++E + +D + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLIIGMNDKQAEAVQTTD--GPLLIMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R P D Sbjct: 59 TFTNKAAREMRER----------------------AIALNPATQDTL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ +F I D + + L++ K Sbjct: 84 ----IATFHSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQL 127 >gi|295111139|emb|CBL27889.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Synergistetes bacterium SGP1] Length = 1213 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 80/194 (41%), Gaps = 23/194 (11%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSH 80 ++ + V A AG+GKT +L R RLLL +A P +L LT+T AAA EM Sbjct: 23 QRAAVTSSDGLITVGAGAGTGKTWVLSNRYARLLLTDADCLPCDILTLTYTDAAAGEMRR 82 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ + + A + D +S E + +LE + TIHAF Sbjct: 83 RIEDRVRALMDVPDAPVSQERRR-------------------EVLEGFSEAWISTIHAFA 123 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 ++++ L ++ A+ Q+++ + + + + + + + + Sbjct: 124 ARLVRESGLALDVDPRSAVVSGPQTERFWARVRDALEEAGLGELADACGSSHLRAVAREL 183 Query: 201 DEDIETLISDIISN 214 D+D LIS + Sbjct: 184 DQD--PLISAAVGR 195 >gi|198284627|ref|YP_002220948.1| exodeoxyribonuclease V subunit beta [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666658|ref|YP_002427300.1| exodeoxyribonuclease V, beta subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249148|gb|ACH84741.1| exodeoxyribonuclease V, beta subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518871|gb|ACK79457.1| exodeoxyribonuclease V, beta subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 1198 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 67/190 (35%), Gaps = 17/190 (8%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHR 81 S + A+AG+GKT + LR++L + P +L +T T+AA E+ R Sbjct: 14 GSRLIEASAGTGKTWTIAALYLRMILGHGSEGEHFPRPLLPEDILVMTFTRAATQELKER 73 Query: 82 VLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 + + + + + + P+ ++A H L + + TI Sbjct: 74 IRDRLQTAARYFRGTEHPAQPDPFLEALLADHPDPEVRARAAHQLTLAADAMDDSAIFTI 133 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 A+C+ +++ S F L ++A + + E ++ Sbjct: 134 DAWCQRTLREHAFATG--SDFRETLLLDETDLRDDAVRDFWRQEIYPLGEPALDEVLQLF 191 Query: 197 EISNDEDIET 206 + ET Sbjct: 192 SGPDKIRQET 201 >gi|32267142|ref|NP_861174.1| putative recombination protein RecB [Helicobacter hepaticus ATCC 51449] gi|32263195|gb|AAP78240.1| putative helicase [Helicobacter hepaticus ATCC 51449] Length = 971 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 12/160 (7%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + LL A+P +L LT TK A+ EM HR+ + + + Sbjct: 9 FALKASAGSGKTFNLSLRFIYLLFQGANPHQILTLTFTKKASKEMYHRIHDYLKFLYDFT 68 Query: 94 DEILSAEITKIQGKKP-----NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + + E I ++ K + +++ ++ TI AF A++++F Sbjct: 69 QDKHTKEGMNIYAALIKEGLSDEFLRDKIESIYYEFIQSNP--RITTIDAFFHAVLKKFC 126 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 I+SHF + + +E + L+++ L + E+ Sbjct: 127 WYVGISSHFEVGNVS-----KDEINERFLSTLSLQDVREI 161 >gi|22537300|ref|NP_688151.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 2603V/R] gi|22534170|gb|AAN00024.1|AE014244_1 ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 2603V/R] Length = 759 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 42/168 (25%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + I ++ ++E + +D + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLIIGMNDKQAEAVQTTD--GPLLIMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R P D Sbjct: 59 TFTNKAAREMRER----------------------AIALNPATQDTL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ +F I D + + L++ K Sbjct: 84 ----IATFHSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQL 127 >gi|260682110|ref|YP_003213395.1| ATP-dependent DNA helicase [Clostridium difficile CD196] gi|260685708|ref|YP_003216841.1| ATP-dependent DNA helicase [Clostridium difficile R20291] gi|296449111|ref|ZP_06890898.1| ATP-dependent DNA helicase PcrA [Clostridium difficile NAP08] gi|296880912|ref|ZP_06904860.1| ATP-dependent DNA helicase PcrA [Clostridium difficile NAP07] gi|260208273|emb|CBA60686.1| ATP-dependent DNA helicase [Clostridium difficile CD196] gi|260211724|emb|CBE02039.1| ATP-dependent DNA helicase [Clostridium difficile R20291] gi|296261930|gb|EFH08738.1| ATP-dependent DNA helicase PcrA [Clostridium difficile NAP08] gi|296428199|gb|EFH14098.1| ATP-dependent DNA helicase PcrA [Clostridium difficile NAP07] Length = 762 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 64/190 (33%), Gaps = 43/190 (22%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 ++L + +++ + A AGSGKT +L R+ L+ +L +T T Sbjct: 9 MNLDTLNPAQREAVEKTEGPVLILAGAGSGKTKVLTTRIAYLIEDKGVQAPNILAITFTN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV + I P D + Sbjct: 69 KAANEMRERVEQNIG---------------------PETKD-----------------MW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ C I+++ + F I D L+++ L + L + KA Sbjct: 91 ISTFHSCCVRILRKDINKIGYNRSFVIYDSADQVTLVKDC----LKELNLSDKVFEPKAV 146 Query: 193 YEILEISNDE 202 + + D+ Sbjct: 147 ISAISGAKDK 156 >gi|170694337|ref|ZP_02885491.1| UvrD/REP helicase [Burkholderia graminis C4D1M] gi|170140760|gb|EDT08934.1| UvrD/REP helicase [Burkholderia graminis C4D1M] Length = 701 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 28/162 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ +SE + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNPAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++Q + F+I D + +I+E ST Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQEQVGST 138 >gi|77412397|ref|ZP_00788706.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae CJB111] gi|77161557|gb|EAO72559.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae CJB111] Length = 759 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 49/161 (30%), Gaps = 40/161 (24%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 I + + A AGSGKT +L R+ L+ +P +L +T T AA Sbjct: 6 IGMNDKQAKAVQTTDGPLLIMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAITFTNKAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R P D + T Sbjct: 66 REMRER----------------------AIALNPATQDTL-----------------IAT 86 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ C I+++ +F I D + + L++ K Sbjct: 87 FHSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQL 127 >gi|23014129|ref|ZP_00053963.1| COG0210: Superfamily I DNA and RNA helicases [Magnetospirillum magnetotacticum MS-1] Length = 760 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 43/186 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 + + V + AG+GKT +L R+ +L +N A P L +T T AA EM Sbjct: 37 NPEQFQAVTTTEGPVLVLSGAGTGKTKVLTSRLAHILASNLAQPWQCLAVTFTNRAAREM 96 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ S G+ + T H+ Sbjct: 97 KERVAQLVGPVS--------------------------------------DGIWLGTFHS 118 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C I++ ++ F + D + +++++ ++ +D + ++ Sbjct: 119 LCLRILRSHAEAVGLSGDFTVLDADDQMRVLKQ----VMSEAHVDPKATPPQGLMATIQR 174 Query: 199 SNDEDI 204 D + Sbjct: 175 WKDRAV 180 >gi|298481368|ref|ZP_06999561.1| UvrD/REP helicase domain-containing protein [Bacteroides sp. D22] gi|298272572|gb|EFI14140.1| UvrD/REP helicase domain-containing protein [Bacteroides sp. D22] Length = 1056 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 11/176 (6%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + Sbjct: 5 LVYKASAGSGKTFTLAVEYIKLLIFNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63 Query: 93 SDEILSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 D+ A + +I+ + K + A L +L +V+TI +F +++M+ E Sbjct: 64 GDKDSEAYLNRIKEETGKTEQEIREAAGIALSYMLHDYSRFRVETIDSFFQSVMRNLARE 123 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 ++ + I E + +++ +A S + + +L+ N+ + Sbjct: 124 LELSPNLNI--ELNNTEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172 >gi|294506436|ref|YP_003570494.1| DNA helicase II [Salinibacter ruber M8] gi|294342764|emb|CBH23542.1| DNA helicase II [Salinibacter ruber M8] Length = 786 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 58/164 (35%), Gaps = 41/164 (25%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70 +D ++ + E + + A GSGKT L R+ LL A A P +L LT Sbjct: 24 RILDGLNDKQRE--AVTTTEGPVMIIAGPGSGKTRALTHRIAYLLAAGKAQPRDILALTF 81 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV ++ + G Sbjct: 82 TNKAANEMQERVEALVGDDAR--------------------------------------G 103 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + V T H+ +++ + + F+I D SK+LI + K Sbjct: 104 MWVGTFHSSFARLLRMEGDKIGYSEDFSIYDTADSKRLIRQQMK 147 >gi|295084357|emb|CBK65880.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Bacteroides xylanisolvens XB1A] Length = 1056 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 11/176 (6%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + Sbjct: 5 LVYKASAGSGKTFTLAVEYIKLLIFNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63 Query: 93 SDEILSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 D+ A + +I+ + K + A L +L +V+TI +F +++M+ E Sbjct: 64 GDKDSEAYLNRIKEETGKTEQEIREAAGIALSYMLHDYSRFRVETIDSFFQSVMRNLARE 123 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 ++ + I E + +++ +A S + + +L+ N+ + Sbjct: 124 LELSPNLNI--ELNNTEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172 >gi|313667543|ref|YP_004047827.1| DNA helicase II [Neisseria lactamica ST-640] gi|313005005|emb|CBN86435.1| DNA helicase II [Neisseria lactamica 020-06] Length = 735 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 58/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 +L+ EQL A P +SA V A AGSGKT +L R+ LL A +++ +T Sbjct: 9 NLLQGLNPEQLSAVTWPPQSALVLAGAGSGKTRVLTTRIAWLLQTDQASVHSIMAVTFIN 68 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I + Sbjct: 69 KAAKEMQTRLGAMIPV--------------------------------------NVRAMW 90 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H C ++ +A + S F I D LI+ KS Sbjct: 91 LGTFHGLCHRFLRLHHRDAGLPSSFQILDSGDQLSLIKRLLKSL 134 >gi|226310272|ref|YP_002770166.1| ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599] gi|226093220|dbj|BAH41662.1| ATP-dependent DNA helicase [Brevibacillus brevis NBRC 100599] Length = 782 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 42/184 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78 ++ + A AGSGKT +L QR+ L+ P ++L +T T AA EM Sbjct: 12 NPEQREAVLTTEGPVLILAGAGSGKTKVLTQRIAYLISAKQVAPWSILAITFTNKAAREM 71 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 +RV II + + T H+ Sbjct: 72 QNRVAAIIGGAAAQD-------------------------------------AWLSTFHS 94 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C I+++ I F+I D ++++ L + +D + ++ + Sbjct: 95 LCVRILRRDIDRLGINRSFSILDAGDQLSVVKQC----LKELNIDPKQYEPRSILAAISG 150 Query: 199 SNDE 202 + +E Sbjct: 151 AKNE 154 >gi|83749766|ref|ZP_00946741.1| ATP-dependent DNA helicase pcrA [Ralstonia solanacearum UW551] gi|83723556|gb|EAP70759.1| ATP-dependent DNA helicase pcrA [Ralstonia solanacearum UW551] Length = 710 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 60/171 (35%), Gaps = 31/171 (18%) Query: 15 DLISQTKSEQLLASDP---------TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 D ++Q +Q A + T V A AGSGKT L RV L+ A P + Sbjct: 15 DYLAQLNDQQRQAVEFGVSGADAAETGPLLVLAGAGSGKTQTLGWRVAHLVAHGADPQRI 74 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L LT ++ AA+E+S R ++ S SA T Q P Sbjct: 75 LLLTFSRRAASELSSRAGHLLARAMQGSTGTRSAAGTTYQTALP---------------- 118 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++++ + F I D S L+ + Sbjct: 119 ------WAGTFHGIGARLLREYAERIGLAPDFTIHDRSDSADLLNVVRHEL 163 >gi|182684161|ref|YP_001835908.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CGSP14] gi|182629495|gb|ACB90443.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CGSP14] Length = 763 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIIAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|224534767|ref|ZP_03675339.1| ATP-dependent DNA helicase PcrA [Borrelia spielmanii A14S] gi|224514015|gb|EEF84337.1| ATP-dependent DNA helicase PcrA [Borrelia spielmanii A14S] Length = 658 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S + + + + + A AGSGKT ++ R+ LLL +L LT T AA E Sbjct: 9 SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQKEILALTFTNKAANE 68 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ +I+ + L V T H Sbjct: 69 MKDRIKKILKSP--------------------------------------LSSLMVSTFH 90 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180 AF +++ +F+I D+ L++E L+++ Sbjct: 91 AFGLFFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLLNKKVSLNSLSNVISLLKN 150 Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219 + + + + + + E L + N D + LI +++SN + ++ Sbjct: 151 GILTLNDLKEEDINIFRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 199 >gi|218893376|ref|YP_002442245.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa LESB58] gi|218773604|emb|CAW29418.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa LESB58] Length = 1245 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 22/214 (10%) Query: 21 KSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLL 66 + + +A DP S + A+AG+GKT + +RL+L + P +L Sbjct: 3 QQQMPVALDPLDFPLHGSRLIEASAGTGKTFTIALLYVRLVLDHGGENAFGRPLSPPEIL 62 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHL---SDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +T T AA E+ R+ + + E + ++ + P + AR LL Sbjct: 63 VVTFTDAATQELRERIRSRLGEAARCFAEPQERHDGLLVALRQQYPAERWPGCAR-LLRL 121 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 E V TIH++C ++++ ++ S F E +L+ E + Sbjct: 122 AAEWMDEAAVSTIHSWCYRMLREHAFDSG--SLFTQNLETDQSELLAEVVRDYWRRNFYG 179 Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTA 217 +A S E + + +++ + A Sbjct: 180 LTAPAAQAVASC--YSGPETLGKALQPLLARQDA 211 >gi|312880761|ref|ZP_07740561.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260] gi|310784052|gb|EFQ24450.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260] Length = 1200 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 68/206 (33%), Gaps = 36/206 (17%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEM 78 ++ P V A AG+GKTH L R LL ++ +L LT T+ AA EM Sbjct: 22 PEQRQGVISPRSLVVVQAGAGTGKTHTLSSRFAWLLASDPTCRVEQILTLTFTEKAAREM 81 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + W E L L + T+HA Sbjct: 82 RDRIRCRLLQWLEAEPEKLGH---------------------LRDAAARIDEGYISTLHA 120 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-----------KSTLASIMLDNNEE 187 F ++++ L ++ IA L EE + L D ++ Sbjct: 121 FALRVIRESGLVLDLDPESRIASPCGEGALFEEMEGAFDRLDPAWFLRLLEDPWRDRCQD 180 Query: 188 L--KKAFYEILEISNDEDIETLISDI 211 L AF ++ + + L+ + Sbjct: 181 LFGDPAFPRLVNALSPRRLAELVREA 206 >gi|237716370|ref|ZP_04546851.1| ATP-dependent helicase [Bacteroides sp. D1] gi|262407972|ref|ZP_06084520.1| ATP-dependent helicase [Bacteroides sp. 2_1_22] gi|294644255|ref|ZP_06722024.1| UvrD/REP helicase [Bacteroides ovatus SD CC 2a] gi|294807965|ref|ZP_06766744.1| UvrD/REP helicase [Bacteroides xylanisolvens SD CC 1b] gi|229444017|gb|EEO49808.1| ATP-dependent helicase [Bacteroides sp. D1] gi|262354780|gb|EEZ03872.1| ATP-dependent helicase [Bacteroides sp. 2_1_22] gi|292640419|gb|EFF58668.1| UvrD/REP helicase [Bacteroides ovatus SD CC 2a] gi|294444849|gb|EFG13537.1| UvrD/REP helicase [Bacteroides xylanisolvens SD CC 1b] Length = 1056 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 11/176 (6%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + + Sbjct: 5 LVYKASAGSGKTFTLAVEYIKLLIFNPRAYRQILAVTFTNKATAEMKERILSQLYGI-QI 63 Query: 93 SDEILSAEITKIQGK--KPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 D+ A + +I+ + K + A L +L +V+TI +F +++M+ E Sbjct: 64 GDKDSEAYLNRIKEETGKTEQEIREAAGVALNYMLHDYSRFRVETIDSFFQSVMRNLARE 123 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 ++ + I E + +++ +A S + + +L+ N+ + Sbjct: 124 LELSPNLNI--ELNNTEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172 >gi|317047247|ref|YP_004114895.1| UvrD/REP helicase [Pantoea sp. At-9b] gi|316948864|gb|ADU68339.1| UvrD/REP helicase [Pantoea sp. At-9b] Length = 1130 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 38/151 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 + A+ + + A G+GKT LV RV LL P +L LT + AA EM+ Sbjct: 198 NDEQAKAAAHRGVAFLLEAGPGTGKTQTLVGRVKGLLNEGVDPRKILLLTFSNKAAGEMA 257 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + + + + + T H+F Sbjct: 258 ERIARVDSGAA--------------------------------------AAMWIGTFHSF 279 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 ++++F + N+ + D ++ +L+E Sbjct: 280 GLDLVRRFHDKLNLPQSPRMLDRTEAVELLE 310 >gi|209515754|ref|ZP_03264617.1| UvrD/REP helicase [Burkholderia sp. H160] gi|209503781|gb|EEA03774.1| UvrD/REP helicase [Burkholderia sp. H160] Length = 696 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 28/162 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ +SE + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNPAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVGKLLEGKTLTAPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++Q + F+I D + +I+E ST Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQEQVGST 138 >gi|260592504|ref|ZP_05857962.1| putative UvrD/REP helicase domain protein [Prevotella veroralis F0319] gi|260535550|gb|EEX18167.1| putative UvrD/REP helicase domain protein [Prevotella veroralis F0319] Length = 1098 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 10/171 (5%) Query: 38 ANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L + L++ N S +L +T T A EM R+L + +H E Sbjct: 10 ASAGSGKTFTLASEYITLVVKNPQDYSRILAVTFTNKATQEMKMRILTQLYGIAHSLKES 69 Query: 97 LSA-EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 E + + P + A L + +V TI AF +AI++ E N+T+ Sbjct: 70 QPYFEQVQTKTDLPEITIRENAAEALSLLTHHYNYFRVLTIDAFFQAILRNLARELNLTA 129 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 + I + + +A + + + EE K I + D +IE Sbjct: 130 NLRIDLNDTQVE--AQAVDNLVNDL-----EEGKDVLIWISDYI-DRNIED 172 >gi|260062807|ref|YP_003195887.1| putative helicase [Robiginitalea biformata HTCC2501] gi|88784375|gb|EAR15545.1| putative helicase [Robiginitalea biformata HTCC2501] Length = 771 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 39/163 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 +D ++ +++ V A AGSGKT +L R+ L+ +L LT T Sbjct: 3 LDELND--AQKAPVLHKDGPLMVIAGAGSGKTRVLTYRIAHLMNQGVDAFNILSLTFTNK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ +I+ + + L + Sbjct: 61 AAREMKKRIADIVGSGEAKN-------------------------------------LWM 83 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ +++ + S+F I D + S++LI K Sbjct: 84 GTFHSVFARLLRYDGDKLGYPSNFTIYDTQDSQRLIASIIKEM 126 >gi|308051314|ref|YP_003914880.1| ATP-dependent DNA helicase Rep [Ferrimonas balearica DSM 9799] gi|307633504|gb|ADN77806.1| ATP-dependent DNA helicase Rep [Ferrimonas balearica DSM 9799] Length = 671 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + ++Q + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPAQQEAVNYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + ++AR GL + T Sbjct: 61 REMKERVAQTLGK--------------------------AEAR-----------GLWIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + F++ D++ + L++E L ++ ++L+ +I Sbjct: 84 FHTLGLDIIRREHKVLGLKPGFSLFDDQDTLALLKELTADELN----EDKDQLRMLITQI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|320535846|ref|ZP_08035924.1| UvrD/REP helicase [Treponema phagedenis F0421] gi|320147309|gb|EFW38847.1| UvrD/REP helicase [Treponema phagedenis F0421] Length = 760 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 43/166 (25%) Query: 11 SETIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 + +D + EQL A + A AGSGKT ++ ++ L+ P +L + Sbjct: 1 MKELDYLKVLNPEQLEAVCHLGSPLLILAGAGSGKTRVITTKIAWLIAEQGIMPEQILAV 60 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE-T 127 T T AA EM R +LE + Sbjct: 61 TFTNKAANEMRER----------------------------------------AEMLEPS 80 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 ++T H+F +++++ +TS F I DEE + L+ +A Sbjct: 81 ASRAMLRTFHSFGAWLLRRYGDRIGLTSSFTIYDEEDTVVLLMKAM 126 >gi|170696350|ref|ZP_02887480.1| UvrD/REP helicase [Burkholderia graminis C4D1M] gi|170138756|gb|EDT06954.1| UvrD/REP helicase [Burkholderia graminis C4D1M] Length = 738 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 62/174 (35%), Gaps = 38/174 (21%) Query: 11 SETIDLISQTKSEQLLASD--------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP 62 S+ +++ Q A + P + V A AGSGKT+ L RV L++ A P Sbjct: 28 SDAAAWLAKLNDAQREAVEYGADTPHAPPGALLVIAGAGSGKTNTLAHRVANLMVKGADP 87 Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122 +L LT ++ AA EM+ RV I TA L Sbjct: 88 GRILLLTFSRRAALEMTRRVTRIATA------------------------------ALGT 117 Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G T H+ +++++ + F I D E S L+ + Sbjct: 118 RAALAQGLTWAGTFHSVGARLLREYAELIGLAPAFTINDREDSADLMNLVRHEL 171 >gi|78223100|ref|YP_384847.1| DNA helicase/exodeoxyribonuclease V subunit beta [Geobacter metallireducens GS-15] gi|78194355|gb|ABB32122.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Geobacter metallireducens GS-15] Length = 1200 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 65/168 (38%), Gaps = 12/168 (7%) Query: 35 WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT+ + LRL++ P +L +T T+AA E+ R+ E + + Sbjct: 16 LIEASAGTGKTYAIACLYLRLVVERGLKPEEILVVTFTEAATKELRSRIRERLREARDVF 75 Query: 94 DEILSAEITKIQGKKPNKSDM---SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + + ++ N+ + +A L L T + TIH FC +Q+ E Sbjct: 76 AGAGTTDDFLLKMGDTNRKEWPGTEEALRRLDLALRTFDCAAISTIHGFCSRALQENAFE 135 Query: 151 ANITSHFAIADEE---QSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 + ++ D E LI+E L + Sbjct: 136 SG-----SLYDTELLADQNPLIQEIVDDFWRQSFFGAEAPLLPHALRL 178 >gi|289168033|ref|YP_003446302.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis B6] gi|288907600|emb|CBJ22437.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis B6] Length = 763 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|15599480|ref|NP_252974.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa PAO1] gi|9950504|gb|AAG07672.1|AE004844_4 exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa PAO1] Length = 1245 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 22/214 (10%) Query: 21 KSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLL 66 + + +A DP S + A+AG+GKT + +RL+L + P +L Sbjct: 3 QQQMPVALDPLDFPLHGSRLIEASAGTGKTFTIALLYVRLVLDHGGENAFGRPLSPPEIL 62 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHL---SDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +T T AA E+ R+ + + E + ++ + P + AR LL Sbjct: 63 VVTFTDAATQELRERIRSRLGEAARCFAEPQERHDGLLVALRQQYPTERWPGCAR-LLRL 121 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 E V TIH++C ++++ ++ S F E +L+ E + Sbjct: 122 AAEWMDEAAVSTIHSWCYRMLREHAFDSG--SLFTQNLETDQSELLAEVVRDYWRRNFYG 179 Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTA 217 +A S E + + +++ + A Sbjct: 180 LTAPAAQAVASC--YSGPEALGKALQPLLARQDA 211 >gi|317508740|ref|ZP_07966393.1| ATP-dependent DNA helicase PcrA [Segniliparus rugosus ATCC BAA-974] gi|316252988|gb|EFV12405.1| ATP-dependent DNA helicase PcrA [Segniliparus rugosus ATCC BAA-974] Length = 804 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 54/163 (33%), Gaps = 40/163 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L + + A AGSGKT ++ +RV LL A P +L +T T A Sbjct: 17 LHGLNPQQAEAVVHLGAPLCIIAGAGSGKTSVITRRVAWLLAERQARPGEILAITFTNKA 76 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E+ RV ++ + V Sbjct: 77 AGELKERVGALVGG--------------------------------------RMWEMWVS 98 Query: 135 TIHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ C ++ + EA +F I D + SK+L+ + Sbjct: 99 TFHSSCARFLRAEASAEAGFDRNFTIYDSDDSKRLLSMVAEEL 141 >gi|254244904|ref|ZP_04938226.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa 2192] gi|126198282|gb|EAZ62345.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa 2192] Length = 1245 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 22/214 (10%) Query: 21 KSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLL 66 + + +A DP S + A+AG+GKT + +RL+L + P +L Sbjct: 3 QQQMPVALDPLDFPLHGSRLIEASAGTGKTFTIALLYVRLVLDHGGESAFGRPLSPPEIL 62 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHL---SDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +T T AA E+ R+ + + E + ++ + P + AR LL Sbjct: 63 VVTFTDAATQELRERIRSRLGEAARCFAEPQERHDGLLVALRQQYPTERWPGCAR-LLRL 121 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 E V TIH++C ++++ ++ S F E +L+ E + Sbjct: 122 AAEWMDEAAVSTIHSWCYRMLREHAFDSG--SLFTQNLETDQSELLAEVVRDYWRRNFYG 179 Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTA 217 +A S E + + +++ + A Sbjct: 180 LTAPAAQAVASC--YSGPETLGKALQPLLARQDA 211 >gi|224531919|ref|ZP_03672551.1| ATP-dependent DNA helicase PcrA [Borrelia valaisiana VS116] gi|224511384|gb|EEF81790.1| ATP-dependent DNA helicase PcrA [Borrelia valaisiana VS116] Length = 658 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 76/229 (33%), Gaps = 65/229 (28%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S + + + + + A AGSGKT ++ R+ LLL +L LT T AA E Sbjct: 9 SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAHLLLKGIAQKEILALTFTNKAANE 68 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ +I+ + L V T H Sbjct: 69 MKDRIKKILKSPLT--------------------------------------NLMVSTFH 90 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS---------------------- 175 AF +++ +F+I D+ L++E Sbjct: 91 AFGLFFLKENYKLLGYRKNFSIYDDNDKISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 150 Query: 176 --TLASIMLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219 + + + + + + E L + N D + LI +++SN + ++ Sbjct: 151 GILTIDDLKEEDINIFRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 199 >gi|116052318|ref|YP_792629.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa UCBPP-PA14] gi|115587539|gb|ABJ13554.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa UCBPP-PA14] Length = 1245 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 22/214 (10%) Query: 21 KSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLL 66 + + +A DP S + A+AG+GKT + +RL+L + P +L Sbjct: 3 QQQMPVALDPLDFPLHGSRLIEASAGTGKTFTIALLYVRLVLDHGGESAFGRPLSPPEIL 62 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHL---SDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +T T AA E+ R+ + + E + ++ + P + AR LL Sbjct: 63 VVTFTDAATQELRERIRSRLGEAARCFAEPQERHDGLLVALRQQYPTERWPGCAR-LLRL 121 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 E V TIH++C ++++ ++ S F E +L+ E + Sbjct: 122 AAEWMDEAAVSTIHSWCYRMLREHAFDSG--SLFTQNLETDQSELLAEVVRDYWRRNFYG 179 Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTA 217 +A S E + + +++ + A Sbjct: 180 LTAPAAQAVASC--YSGPEALGKALQPLLARQDA 211 >gi|260887265|ref|ZP_05898528.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC 35185] gi|260863327|gb|EEX77827.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC 35185] Length = 766 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 60/167 (35%), Gaps = 43/167 (25%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 + ++ + E + D + A AGSGKT +L R+ LL P ++L +T T Sbjct: 13 DIFQGLNPMQREAVAHID--GPLLIMAGAGSGKTKVLTCRIANLLAHGVPPYSILAITFT 70 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM RV +I + Sbjct: 71 NKAAAEMRERVDRMIGGLGK--------------------------------------DV 92 Query: 132 KVQTIHAFCEAIMQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKST 176 + T H+FC +++ +EA +F I D SK +I+ K Sbjct: 93 WLSTFHSFCARFLRRE-IEAGEVYKKNFVIYDTSDSKTVIKACLKEL 138 >gi|297588277|ref|ZP_06946920.1| UvrD/REP helicase subfamily [Finegoldia magna ATCC 53516] gi|297573650|gb|EFH92371.1| UvrD/REP helicase subfamily [Finegoldia magna ATCC 53516] Length = 967 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 36/164 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +I + +++L S ++ V+A AG+GKT ++ +R + +++C+T T AA Sbjct: 1 MIKFSDNQKLAYSTIDKNVCVNAGAGTGKTEVVSERFRYMYENGIDIKSIVCITFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+++ + + D + V T Sbjct: 61 DEMKDRIIQKLNNPRLVDD------------------------------------INVST 84 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 I +FC+ I+ +I F I +++Q+ K+I E L + Sbjct: 85 ISSFCKKIVSDNSYYLSIDPSFQIIEDDQANKMINEIFDKILEN 128 >gi|86141573|ref|ZP_01060119.1| putative helicase [Leeuwenhoekiella blandensis MED217] gi|85832132|gb|EAQ50587.1| putative helicase [Leeuwenhoekiella blandensis MED217] Length = 773 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 39/164 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ++ +++ +++ + V A AGSGKT +L R+ L+ +L LT T Sbjct: 4 LLEGLNE--AQRAPVLQKEGAMMVIAGAGSGKTRVLTMRIAHLMQQGVDAFNILSLTFTN 61 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ I+ + L Sbjct: 62 KAAREMKSRIGTIVGNSEAKN-------------------------------------LW 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ I++ +F I D + S++LI K Sbjct: 85 MGTFHSVFAKILRIEGHHLGFPPNFTIYDSQDSQRLISAIIKEM 128 >gi|254239046|ref|ZP_04932369.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa C3719] gi|126170977|gb|EAZ56488.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa C3719] Length = 1245 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 22/214 (10%) Query: 21 KSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLL 66 + + +A DP S + A+AG+GKT + +RL+L + P +L Sbjct: 3 QQQMPVALDPLDFPLHGSRLIEASAGTGKTFTIALLYVRLVLDHGGENAFGRPLSPPEIL 62 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHL---SDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +T T AA E+ R+ + + E + ++ + P + AR LL Sbjct: 63 VVTFTDAATQELRERIRSRLGEAARCFSEPQERHDGLLVALRQQYPAERWPGCAR-LLRL 121 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 E V TIH++C ++++ ++ S F E +L+ E + Sbjct: 122 AAEWMDEAAVSTIHSWCYRMLREHAFDSG--SLFTQNLETDQSELLAEVVRDYWRRNFYG 179 Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTA 217 +A S E + + +++ + A Sbjct: 180 LTAPAAQAVASC--YSGPETLGKALQPLLARQDA 211 >gi|255691765|ref|ZP_05415440.1| ATP-dependent helicase [Bacteroides finegoldii DSM 17565] gi|260622481|gb|EEX45352.1| ATP-dependent helicase [Bacteroides finegoldii DSM 17565] Length = 1056 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 37/175 (21%), Positives = 71/175 (40%), Gaps = 9/175 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L ++LL+ N +L +T T A AEM R+L + Sbjct: 5 LVYKASAGSGKTFTLAVEYIKLLILNPRAYRQILAVTFTNKATAEMKERILSQLYGIQIG 64 Query: 93 S-DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 D + K + + + A L +L +V+TI +F +++M+ E Sbjct: 65 DRDSQAYLDRIKKETGRAEQEIREAAGVALGYMLHDYSRFRVETIDSFFQSVMRNLAREL 124 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 ++ + I E + +++ +A S + + +L+ N+ + Sbjct: 125 ELSPNLNI--ELNNTEVLSDAVDSMIEKLG-----PTSPVLAWLLDYINERIADD 172 >gi|296390981|ref|ZP_06880456.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa PAb1] Length = 1245 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 22/214 (10%) Query: 21 KSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLL 66 + + +A DP S + A+AG+GKT + +RL+L + P +L Sbjct: 3 QQQMPVALDPLDFPLHGSRLIEASAGTGKTFTIALLYVRLVLDHGGESAFGRPLSPPEIL 62 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHL---SDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +T T AA E+ R+ + + E + ++ + P + AR LL Sbjct: 63 VVTFTDAATQELRERIRSRLGEAARCFAEPQERHDGLLVALRQQYPAERWPGCAR-LLRL 121 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 E V TIH++C ++++ ++ S F E +L+ E + Sbjct: 122 AAEWMDEAAVSTIHSWCYRMLREHAFDSG--SLFTQNLETDQSELLAEVVRDYWRRNFYG 179 Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTA 217 +A S E + + +++ + A Sbjct: 180 LTAPAAQAVASC--YSGPEALGKALQPLLARQDA 211 >gi|148994163|ref|ZP_01823478.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP9-BS68] gi|168488930|ref|ZP_02713129.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP195] gi|147927406|gb|EDK78436.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP9-BS68] gi|183572486|gb|EDT93014.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP195] gi|332073447|gb|EGI83926.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17570] Length = 763 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|149006240|ref|ZP_01829952.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP18-BS74] gi|307127381|ref|YP_003879412.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 670-6B] gi|147762017|gb|EDK68979.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP18-BS74] gi|306484443|gb|ADM91312.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 670-6B] gi|332075042|gb|EGI85513.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA17545] Length = 763 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|307731432|ref|YP_003908656.1| UvrD/REP helicase [Burkholderia sp. CCGE1003] gi|307585967|gb|ADN59365.1| UvrD/REP helicase [Burkholderia sp. CCGE1003] Length = 699 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 28/162 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ +SE + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNPAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++Q + F+I D + +I+E ST Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQEQVGST 138 >gi|261345272|ref|ZP_05972916.1| ATP-dependent DNA helicase Rep [Providencia rustigianii DSM 4541] gi|282566971|gb|EFB72506.1| ATP-dependent DNA helicase Rep [Providencia rustigianii DSM 4541] Length = 675 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q V A AGSGKT ++ ++ L+ P + +T T AA EM Sbjct: 4 NPSQQQAVEYVDGPCLVLAGAGSGKTRVITNKIAHLIRHCGYQPRQIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR L+ + T H Sbjct: 64 KERVGQTLGK--------------------------KEARGLI-----------ISTFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ I S+F++ D++ L++E L ++ + LK+ I Sbjct: 87 LGLEIIKREYKALGIKSNFSLFDDQDQIALLKELTFDLLE----EDKDLLKQLISTISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|319947223|ref|ZP_08021457.1| exonuclease RexA [Streptococcus australis ATCC 700641] gi|319747271|gb|EFV99530.1| exonuclease RexA [Streptococcus australis ATCC 700641] Length = 1227 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 76/222 (34%), Gaps = 28/222 (12%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T + + VSA+AGSGKT ++VQR+L L L T T AA E+ Sbjct: 29 TPEQIEAIYSSGTNILVSASAGSGKTFVMVQRILDQLHRGISIQQLFISTFTVKAATELK 88 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + + S + + +H L + + T+ AF Sbjct: 89 ERLEKELEKSLKASQD-------------------EELKHHLAQQIAELPTSDIGTMDAF 129 Query: 140 CEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 + ++ ++ ++ F I + L + + + + F +++ Sbjct: 130 TQRLVSKYGYLLGLSPTFRILQSASEQSLLKNDCFEQVFERFYEVQGPD--RLFSRLVKN 187 Query: 199 SNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLW 239 + + + + L+ F S + +E+S Sbjct: 188 FTGKG-----KSLAGFKDQVYALVDFLQSTADPQAWLEESFL 224 >gi|315187021|gb|EFU20778.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578] Length = 665 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 56/164 (34%), Gaps = 39/164 (23%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID ++ S Q A + A AGSGKT ++ R+ +L ++ +L LT T Sbjct: 3 IDYRAELNSAQYEAVTTIDGPLLIIAGAGSGKTRVITYRIAYMLDSHIPQKAILALTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV + L Sbjct: 63 KAAREMWERVRTLTGK--------------------------------------KLTNLT 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+F I+++ F+I D + K L+++ + Sbjct: 85 VGTFHSFGAQILREHIHLLGYRPTFSIYDTQDQKALLKQCIQEV 128 >gi|297744967|emb|CBI38559.3| unnamed protein product [Vitis vinifera] Length = 951 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 66/166 (39%), Gaps = 38/166 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 E+S+ + ++ T+ E SD + + A GSGKT +V R+L LL PS +L + Sbjct: 4 EYSKYLQSLNDTQREA-ACSDISIPLMIVAGPGSGKTSTMVGRILMLLNEGISPSNILAM 62 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AAA+EMS R+ + ET Sbjct: 63 TFTTAAASEMSGRIAAVAGK-------------------------------------ETA 85 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + V T H+F + + + TS F I Q ++ I EA + Sbjct: 86 KEVTVSTFHSFALQLCRSHAEKLGRTSEFLIYGHGQQRRAIIEAVR 131 >gi|224437387|ref|ZP_03658358.1| putative recombination protein RecB [Helicobacter cinaedi CCUG 18818] gi|313143850|ref|ZP_07806043.1| helicase [Helicobacter cinaedi CCUG 18818] gi|313128881|gb|EFR46498.1| helicase [Helicobacter cinaedi CCUG 18818] Length = 991 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 8/142 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE----IITAW 89 + A+AGSGKT L R + LL A+P +L LT TK A+ EM R+ E ++ ++ Sbjct: 6 LALKASAGSGKTFSLSLRFIYLLFQGANPHQILTLTFTKKASNEMYRRIYEHLKSLLLSF 65 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + E +Q + L T +++ ++ TI +F +++++F Sbjct: 66 ETGTFESNDIYKALLQKGLSHNQISENIAALYHTFMQSSS--RITTIDSFFHSVLKKFCW 123 Query: 150 EANITSHFAI--ADEEQSKKLI 169 ++S F I D+ + ++ Sbjct: 124 YVGVSSRFEIGQIDKGEMYEMF 145 >gi|85714693|ref|ZP_01045680.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A] gi|85698578|gb|EAQ36448.1| UvrD/REP helicase [Nitrobacter sp. Nb-311A] Length = 814 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 68/191 (35%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 +S EQ A + V A AG+GKT +L R+ +L A P +L +T T Sbjct: 32 YLSGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSQGRARPGEVLSVTFTNK 91 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM HR+ +++ G + Sbjct: 92 AAREMKHRLGQMLGQSVE-------------------------------------GMPWL 114 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ I++ + S+F I D + +L+++ L + +D+ + Sbjct: 115 GTFHSIAGRILRVHAELVQLKSNFTILDVDDQIRLLKQ----LLQADNIDDKRWPARMLA 170 Query: 194 EILEISNDEDI 204 +++ + + Sbjct: 171 GLIDGWKNRGL 181 >gi|313106801|ref|ZP_07793015.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa 39016] gi|310879517|gb|EFQ38111.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa 39016] Length = 1245 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 22/214 (10%) Query: 21 KSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLL 66 + + +A DP S + A+AG+GKT + +RL+L + P +L Sbjct: 3 QQQMPVALDPLDFPLHGSRLIEASAGTGKTFTIALLYVRLVLDHGGESAFGRPLSPPEIL 62 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHL---SDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +T T AA E+ R+ + + E + ++ + P + AR LL Sbjct: 63 VVTFTDAATQELRERIRSRLGEAARCFAEPQERHDGLLVALRQQYPAERWPGCAR-LLRL 121 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 E V TIH++C ++++ ++ S F E +L+ E + Sbjct: 122 AAEWMDEAAVSTIHSWCYRMLREHAFDSG--SLFTQNLETDQSELLAEVVRDYWRRNFYG 179 Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTA 217 +A S E + + +++ + A Sbjct: 180 LTAPAAQAVASC--YSGPEALGKALQPLLARQDA 211 >gi|330838978|ref|YP_004413558.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC 35185] gi|329746742|gb|AEC00099.1| ATP-dependent DNA helicase PcrA [Selenomonas sputigena ATCC 35185] Length = 755 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 60/168 (35%), Gaps = 43/168 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 + ++ + E + D + A AGSGKT +L R+ LL P ++L +T Sbjct: 1 MDIFQGLNPMQREAVAHID--GPLLIMAGAGSGKTKVLTCRIANLLAHGVPPYSILAITF 58 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AAAEM RV +I Sbjct: 59 TNKAAAEMRERVDRMIGGLGK--------------------------------------D 80 Query: 131 LKVQTIHAFCEAIMQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKST 176 + + T H+FC +++ +EA +F I D SK +I+ K Sbjct: 81 VWLSTFHSFCARFLRRE-IEAGEVYKKNFVIYDTSDSKTVIKACLKEL 127 >gi|107100131|ref|ZP_01364049.1| hypothetical protein PaerPA_01001152 [Pseudomonas aeruginosa PACS2] Length = 1245 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 81/214 (37%), Gaps = 22/214 (10%) Query: 21 KSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLL 66 + + +A DP S + A+AG+GKT + +RL+L + P +L Sbjct: 3 QQQMPVALDPLDFPLHGSRLIEASAGTGKTFTIALLYVRLVLDHGGENAFGRPLSPPEIL 62 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHL---SDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +T T AA E+ R+ + + E + ++ + P + AR LL Sbjct: 63 VVTFTDAATQELRERIRSRLGEAARCFAEPQERHDGLLVALRQQYPAERWPGCAR-LLRL 121 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 E V TIH++C ++++ ++ S F E +L+ E + Sbjct: 122 AAEWMDEAAVSTIHSWCYRMLREHAFDSG--SLFTQNLETDQSELLAEVVRDYWRRNFYG 179 Query: 184 NNEELKKAFYEILEISNDEDIETLISDIISNRTA 217 +A S E + + +++ + A Sbjct: 180 LTAPAAQAVASC--YSGPETLGKALQPLLARQDA 211 >gi|257456971|ref|ZP_05622152.1| helicase, UvrD/Rep family [Treponema vincentii ATCC 35580] gi|257445680|gb|EEV20742.1| helicase, UvrD/Rep family [Treponema vincentii ATCC 35580] Length = 661 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 38/163 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 ++ + + + + A AGSGKT ++ R+ +L + S +L LT T Sbjct: 1 MNTENLNPEQAKAVNTINGPVLIIAGAGSGKTRVITFRIAHMLESGIPQSQILALTFTNK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ E+ L + Sbjct: 61 AAREMEQRIKELTGK--------------------------------------KLQNLTI 82 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA I++++ +F+I DE +LI+E+ K Sbjct: 83 STFHALGVKILREYIDRLGWRQNFSIYDEVDRNQLIKESAKEL 125 >gi|312864740|ref|ZP_07724971.1| ATP-dependent DNA helicase PcrA [Streptococcus downei F0415] gi|311099867|gb|EFQ58080.1| ATP-dependent DNA helicase PcrA [Streptococcus downei F0415] Length = 764 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 71/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + + + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLLNGMNDKQAEAVRTT--QGPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + + + Sbjct: 59 TFTNKAAREMRER---------------------AMLLNPATEETL-------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L++ K +D+ + Sbjct: 84 ----IATFHSMCVRILRREADHIGYDRNFTIVDPGEQRTLMKRIIKGF----NMDSKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++A + + ++ I+ Sbjct: 136 ERAILGTISNAKNDLIDE 153 >gi|225552476|ref|ZP_03773416.1| ATP-dependent DNA helicase PcrA [Borrelia sp. SV1] gi|225371474|gb|EEH00904.1| ATP-dependent DNA helicase PcrA [Borrelia sp. SV1] Length = 659 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 65/229 (28%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S + + + + + A AGSGKT ++ R+ LLL +L LT T AA E Sbjct: 10 SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ +I+ + L V T H Sbjct: 70 MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-----------LASI------ 180 AF +++ +F+I D+ L++E L+++ Sbjct: 92 AFGLFFLKENYKLLGCRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 151 Query: 181 -------MLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219 + + + + + + E L + N D + LI +++SN + ++ Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 200 >gi|167582799|ref|ZP_02375673.1| ATP-dependent DNA helicase Rep [Burkholderia thailandensis TXDOH] Length = 695 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ +SE + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNPAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133 >gi|77360798|ref|YP_340373.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Pseudoalteromonas haloplanktis TAC125] gi|76875709|emb|CAI86930.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Pseudoalteromonas haloplanktis TAC125] Length = 1213 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 40/176 (22%), Positives = 66/176 (37%), Gaps = 18/176 (10%) Query: 35 WVSANAGSGKTHILVQRVLR-------------LLLANAHPSTLLCLTHTKAAAAEMSHR 81 + A+AG+GKT+ + LR LL +L +T T AA E+ R Sbjct: 16 LIEASAGTGKTYTITGLYLRYLLGMQIADDANSLLNKPLSVEQILVVTFTDAATQEIKDR 75 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V I + I G D +A LL ++ + TIH FC+ Sbjct: 76 VRNRIITARDALLGQDPKD-ELIAGVIAAVDDKHRAFDLLDAAAKSMDEAAIFTIHGFCQ 134 Query: 142 AIMQQFPLEANITSHFA-IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 +++Q E+ + + I DE ++ E K + + N+E A + Sbjct: 135 RMLKQHAFESGVAFNLEFILDERD---ILLETIKDFWRAFVYPLNKEKTDAILGVF 187 >gi|186477746|ref|YP_001859216.1| UvrD/REP helicase [Burkholderia phymatum STM815] gi|184194205|gb|ACC72170.1| UvrD/REP helicase [Burkholderia phymatum STM815] Length = 731 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 28/162 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 ++ +SE + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 40 GLNSAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIENKGFEPRHIAAVTFTNKA 97 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 98 AAEMRERVGKLLEGKTLTAPGKEGRKVP-------------------------VNQLTVC 132 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++Q + F+I D + +I+E ST Sbjct: 133 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQEQVGST 174 >gi|157803783|ref|YP_001492332.1| DNA helicase II [Rickettsia canadensis str. McKiel] gi|157785046|gb|ABV73547.1| DNA helicase II [Rickettsia canadensis str. McKiel] Length = 661 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 60/164 (36%), Gaps = 44/164 (26%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D ++ +Q A + A AG+GKT +L R+ ++ N A P +L +T T Sbjct: 15 DFLNTLNPQQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIYQNLASPHNILAVTFTN 74 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV +I GL Sbjct: 75 KAAKEMVERVHSLI----------------------------------------NCDGLN 94 Query: 133 VQTIHAFCEAIMQQF--PLEANITSHFAIADEEQSKKLIEEAKK 174 + T H+ I+++ L + + F I +++ KL+++ K Sbjct: 95 IGTFHSMAARILREHIEHLNLGLNNRFTIISQDEQLKLVKDIVK 138 >gi|256831952|ref|YP_003160679.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603] gi|256685483|gb|ACV08376.1| UvrD/REP helicase [Jonesia denitrificans DSM 20603] Length = 1103 Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 67/179 (37%), Gaps = 9/179 (5%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 S ++ ++ +DL T +Q + P S V A AGSGKT + RV+ L+ P Sbjct: 7 SARDIAQLLDLPHPTVEQQAIIEAPLESMLVIAGAGSGKTETMSARVVWLIANQIIAPER 66 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L LT T+ AA E++ R+ + ++ + S I + Sbjct: 67 VLGLTFTRKAAGELTERIRARLAHLDRVAPGLTSRRIDTNNDRHTTADTPP--------A 118 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 L + T +++ +++ + L + E ++ + + D Sbjct: 119 LSALARPTISTYNSYAASLVTEHGLRIGREPGARLLTEASIWAMVSDIVDHWQEDLDTD 177 >gi|300697919|ref|YP_003748580.1| atp-dependent dna helicase II protein (uvrD) [Ralstonia solanacearum CFBP2957] gi|299074643|emb|CBJ54200.1| putative atp-dependent dna helicase II protein (uvrD) [Ralstonia solanacearum CFBP2957] Length = 710 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 60/171 (35%), Gaps = 31/171 (18%) Query: 15 DLISQTKSEQLLASDP---------TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 D ++Q +Q A + T V A AGSGKT L RV L+ A P + Sbjct: 15 DYLAQLNDQQRQAVEFGVSGADAAETGPLLVLAGAGSGKTQTLGWRVAHLVAHGADPQRI 74 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L LT ++ AA+E+S R ++ + SA T Q P Sbjct: 75 LLLTFSRRAASELSSRAGHLLARAMQGNTGTRSAAGTTYQTALP---------------- 118 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++++ + F I D S L+ + Sbjct: 119 ------WAGTFHGIGARLLREYADRIGLAPDFTIHDRSDSADLLNVVRHEL 163 >gi|295678114|ref|YP_003606638.1| UvrD/REP helicase [Burkholderia sp. CCGE1002] gi|295437957|gb|ADG17127.1| UvrD/REP helicase [Burkholderia sp. CCGE1002] Length = 696 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 28/162 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ +SE + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNPAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVGKLLEGKTLTAPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++Q + F+I D + +I+E ST Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQEQVGST 138 >gi|169832763|ref|YP_001694512.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae Hungary19A-6] gi|168995265|gb|ACA35877.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae Hungary19A-6] Length = 763 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|225454963|ref|XP_002277737.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1151 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 43/166 (25%), Positives = 66/166 (39%), Gaps = 38/166 (22%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 E+S+ + ++ T+ E SD + + A GSGKT +V R+L LL PS +L + Sbjct: 244 EYSKYLQSLNDTQREA-ACSDISIPLMIVAGPGSGKTSTMVGRILMLLNEGISPSNILAM 302 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AAA+EMS R+ + ET Sbjct: 303 TFTTAAASEMSGRIAAVAGK-------------------------------------ETA 325 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + V T H+F + + + TS F I Q ++ I EA + Sbjct: 326 KEVTVSTFHSFALQLCRSHAEKLGRTSEFLIYGHGQQRRAIIEAVR 371 >gi|189485139|ref|YP_001956080.1| RecB-like exodeoxyribonuclease V beta chain [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287098|dbj|BAG13619.1| RecB-like exodeoxyribonuclease V beta chain [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 1024 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 7/137 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 V A+AG+GKT+ L +R L LLL N ++ +T T AA EM +RV++ + + Sbjct: 9 VLASAGTGKTYNLAKRYLYLLLSSNDNTSIKNIIAVTFTNKAAVEMKYRVIDYLKKAALS 68 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 D + ++ K ++ +L I + + TI +F I++ + + Sbjct: 69 LDTGDFFDELELTKDKIA----QRSAAVLKDIFKFYDNFNISTIDSFKNRILKSCAMSID 124 Query: 153 ITSHFAIADEEQSKKLI 169 I+ +F I + L Sbjct: 125 ISPNFVIEQDYSDNLLF 141 >gi|46445668|ref|YP_007033.1| ATP-dependent DNA helicase [Candidatus Protochlamydia amoebophila UWE25] gi|46399309|emb|CAF22758.1| probable ATP-dependent DNA helicase [Candidatus Protochlamydia amoebophila UWE25] Length = 761 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 45/187 (24%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 +L + K ++ + V A AGSGKT ++ R++ L+ PS +L +T T A Sbjct: 39 NLFNLNKEQKDAVTTLEGPVLVLAGAGSGKTRVVTSRIVNLIENGISPSNILGVTFTNKA 98 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ + Sbjct: 99 AQEMRERVCKLTQHHVL-----------------------------------------IC 117 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ I+++ F I DEE KL K+ L + + + K F + Sbjct: 118 TFHSLGAKILRESIHVLGYQRDFTIYDEEDVNKL----VKACLMELNWQDKKVDAKPFRQ 173 Query: 195 ILEISND 201 ++ + + Sbjct: 174 MISQAKN 180 >gi|307131099|ref|YP_003883115.1| exonuclease V (RecBCD complex), subunit beta [Dickeya dadantii 3937] gi|306528628|gb|ADM98558.1| exonuclease V (RecBCD complex), beta subunit [Dickeya dadantii 3937] Length = 1224 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 85/230 (36%), Gaps = 32/230 (13%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHR 81 S + A+AG+GKT + +RL+L + +P +L +T T AA E+ R Sbjct: 18 AGSRLIEASAGTGKTFTIAMLYVRLVLGHGGEQAFSRPLNPPDILVVTFTDAATRELRDR 77 Query: 82 VLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 + + + D+ + + +++ P + AR L + E V TI Sbjct: 78 IRARLAQAAAYFQPDGKDDAVDPLLGELRADYPPEQWPDCARKLQLAA-EWMDEAAVSTI 136 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN----------- 185 H++C ++ + ++ S F E L+ E + + + Sbjct: 137 HSWCNRMLGEHAFDSG--SLFNQTLETDQSDLLLEVVRDYWRTFFFPLDARDVLELRYSW 194 Query: 186 ---EELKKAFYEILEISNDEDIETLISDIISN-RTALKLIFFFFSYLWRR 231 E ++ +LE +++ I+ L + I S R W + Sbjct: 195 PSPEHFYRSVTPLLEYADEIGIDDLPAQIFSAVREEKTRRLSALKAPWPQ 244 >gi|226320834|ref|ZP_03796387.1| ATP-dependent DNA helicase [Borrelia burgdorferi 29805] gi|226233776|gb|EEH32504.1| ATP-dependent DNA helicase [Borrelia burgdorferi 29805] Length = 242 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 65/229 (28%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S + + + + + A AGSGKT ++ R+ LLL +L LT T AA E Sbjct: 10 SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQREILALTFTNKAANE 69 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ +I+ + L V T H Sbjct: 70 MKDRIKKILKSP--------------------------------------LSNLMVSTFH 91 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS---------------------- 175 AF +++ +F+I D+ L++E Sbjct: 92 AFGLYFLKENYKLLGYRKNFSIYDDNDRISLLKEILLDEGLFNKKVSLNSLSNVISLLKN 151 Query: 176 --TLASIMLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALK 219 + + + + + + + E L + N D + LI +++SN + ++ Sbjct: 152 GILTLNDLKEEDINIYRLYEERLRLYNSFDFDDLILKPKELLSNNSDIR 200 >gi|307704751|ref|ZP_07641647.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK597] gi|307621660|gb|EFO00701.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis SK597] Length = 763 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|194397544|ref|YP_002037718.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae G54] gi|194357211|gb|ACF55659.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae G54] Length = 763 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|114563702|ref|YP_751215.1| exodeoxyribonuclease V, beta subunit [Shewanella frigidimarina NCIMB 400] gi|114334995|gb|ABI72377.1| exodeoxyribonuclease V, beta subunit [Shewanella frigidimarina NCIMB 400] Length = 1276 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 12/174 (6%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA--NAHP---STLLCLTHTKAAAAEMSHRVLEI 85 + S+ + A+AG+GKT+ + LRLLL P +L +T T AA E+ R+ + Sbjct: 17 SGSSLIEASAGTGKTYTISGLYLRLLLGHGGKAPLSCEQILVVTFTNAATEELRDRIRKR 76 Query: 86 IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I A+ ++ E + + ++ + A L L++ + TIHAFC+ ++ Sbjct: 77 INLAFKRFLGLAVNDEFIEQLYQDTSEDERPIALRRLDLALKSLDEAAIFTIHAFCQRVL 136 Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 E+++ S F + D E + A + + L +A ++ Sbjct: 137 SDMAFESSLLFESEFTLDDSE----FLHHAVRDFWREVCYPLPPFLAQAISDVF 186 >gi|91203329|emb|CAJ72968.1| strongly similar to ATP-dependent DNA helicase [Candidatus Kuenenia stuttgartiensis] Length = 729 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 63/186 (33%), Gaps = 44/186 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T ++ + + A AGSGKT ++ +R+ L+ P +L +T T AA EM+ Sbjct: 8 TDKQREAITHIDGPLLIVAGAGSGKTRVITRRIGYLMSEGISPYNILAITFTNKAANEMA 67 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV + + G+ V T H Sbjct: 68 ERVKKF----------------------------------------SSHKGMWVSTFHKM 87 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C I+++ + F I D KS +A + +D ++ + + Sbjct: 88 CSRILRKDIELLGYSKDFTIYDTVDQL----NRIKSIMADLEIDTAHWKPRSIISSISNA 143 Query: 200 NDEDIE 205 ++ I+ Sbjct: 144 KNKLID 149 >gi|157827215|ref|YP_001496279.1| DNA helicase II [Rickettsia bellii OSU 85-389] gi|157802519|gb|ABV79242.1| DNA helicase II [Rickettsia bellii OSU 85-389] Length = 653 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 43/162 (26%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L S + +Q + A AG+GKT +L R+ ++ N A P +L +T T A Sbjct: 7 LHSLNEQQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +++++ GL + Sbjct: 67 AKEMQERVHNLVSSY----------------------------------------GLNIG 86 Query: 135 TIHAFCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKK 174 T H+ I++ L + S F I ++ +LI++ K Sbjct: 87 TFHSMAARILRDQIEHLNLGLNSRFTIISQDDQLRLIKDIVK 128 >gi|225010856|ref|ZP_03701324.1| UvrD/REP helicase [Flavobacteria bacterium MS024-3C] gi|225005064|gb|EEG43018.1| UvrD/REP helicase [Flavobacteria bacterium MS024-3C] Length = 773 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 55/159 (34%), Gaps = 37/159 (23%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S ++++ V A AGSGKT +L R+ L+ +L LT T AA E Sbjct: 7 SLNEAQKAPVLHKDGPLMVIAGAGSGKTRVLTIRIAHLMSLGVDSFNILALTFTNKAARE 66 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M HR+ I+ + L + T H Sbjct: 67 MKHRISSIVGGAEAKN-------------------------------------LWMGTFH 89 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + +++ + S+F I D + S++LI K Sbjct: 90 SVFAKLLRFDGDKLGYPSNFTIYDTQDSQRLIASIIKEM 128 >gi|149921796|ref|ZP_01910242.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1] gi|149817357|gb|EDM76831.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1] Length = 683 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 57/165 (34%), Gaps = 39/165 (23%) Query: 13 TIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 +DL +Q + P V A AG+GKT L RV +L+ P ++ +T T Sbjct: 14 AVDLQRDLNPQQRAVVEAPAGKILVLAGAGTGKTRTLTYRVAKLVAGGCQPERIMLVTFT 73 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM HRV ++T DM ++ Sbjct: 74 NRAAREMVHRVESLLTI------------------------DMRRSAS------------ 97 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H I++++ + F I D E ++ L+ Sbjct: 98 --GTFHHVGNRILRRYGEAVGLGPDFGILDPEDARDLMGSVVSEL 140 >gi|91205500|ref|YP_537855.1| DNA helicase II [Rickettsia bellii RML369-C] gi|122425652|sp|Q1RIP8|UVRD_RICBR RecName: Full=Probable DNA helicase II homolog gi|91069044|gb|ABE04766.1| DNA helicase II [Rickettsia bellii RML369-C] Length = 653 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 43/162 (26%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L S + +Q + A AG+GKT +L R+ ++ N A P +L +T T A Sbjct: 7 LHSLNEQQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +++++ GL + Sbjct: 67 AKEMQERVHNLVSSY----------------------------------------GLNIG 86 Query: 135 TIHAFCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKK 174 T H+ I++ L + S F I ++ +LI++ K Sbjct: 87 TFHSMAARILRDQIEHLNLGLNSRFTIISQDDQLRLIKDIVK 128 >gi|285016934|ref|YP_003374645.1| ATP-dependent DNA helicase [Xanthomonas albilineans GPE PC73] gi|283472152|emb|CBA14659.1| probable atp-dependent dna helicase protein [Xanthomonas albilineans] Length = 733 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 41/169 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLC 67 + S +D ++ + E + A P V A AGSGKT +L R+ L + + Sbjct: 2 DVSHLLDDLNPAQREAVSA--PPGHYLVLAGAGSGKTRVLTHRIAWLHEVHGVPVHGMFA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM HR + S Sbjct: 60 VTFTNKAAGEMRHRADLQLRNGSR------------------------------------ 83 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G+ + T H +++ +A + F + D + +L++ + Sbjct: 84 --GMWIGTFHGLAHRLLRLHWQDARLPESFQVLDADDQLRLVKRVVQQL 130 >gi|15903039|ref|NP_358589.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae R6] gi|116515714|ref|YP_816449.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae D39] gi|15458610|gb|AAK99799.1| ATP-dependent DNA helicase [Streptococcus pneumoniae R6] gi|116076290|gb|ABJ54010.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae D39] Length = 763 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|325298044|ref|YP_004257961.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170] gi|324317597|gb|ADY35488.1| UvrD/REP helicase [Bacteroides salanitronis DSM 18170] Length = 1071 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 48/216 (22%), Positives = 90/216 (41%), Gaps = 12/216 (5%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEII 86 +D + A+AGSGKT L ++ L+ + +L +T T A AEM +R+LE + Sbjct: 2 TDYPQLLVYKASAGSGKTFTLALHYIKQLVEDPTAYRHILAVTFTNKATAEMKNRILEQL 61 Query: 87 TAWSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + L + K + A L I+ +++TI +F +A+++ Sbjct: 62 YGLGYGLPTSKSYLQELKKTCALSDTEIRQAAIRALHNIIHDYSRFRIETIDSFFQAVLR 121 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE--ISNDED 203 E + ++ I E + ++ + + + + D L E +E IS+D+ Sbjct: 122 NLARELELGANMTI--ELNNADVLSDTVDAMIEKL--DRLSPLLSWLLEYIEQRISDDKR 177 Query: 204 IETLISDIIS--NRTALKLIFFFFSYLWRRKIIEKS 237 + ISD I R L + RRK+ + + Sbjct: 178 WD--ISDEIKGFGRNILDERYIEKGEGLRRKLADPA 211 >gi|225858900|ref|YP_002740410.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 70585] gi|225721717|gb|ACO17571.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae 70585] Length = 763 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|15900955|ref|NP_345559.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae TIGR4] gi|111657604|ref|ZP_01408340.1| hypothetical protein SpneT_02001214 [Streptococcus pneumoniae TIGR4] gi|14972562|gb|AAK75199.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae TIGR4] Length = 763 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|301794204|emb|CBW36623.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae INV104] Length = 763 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|168486496|ref|ZP_02711004.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC1087-00] gi|183570538|gb|EDT91066.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC1087-00] Length = 763 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|319791122|ref|YP_004152762.1| uvrd/rep helicase [Variovorax paradoxus EPS] gi|315593585|gb|ADU34651.1| UvrD/REP helicase [Variovorax paradoxus EPS] Length = 705 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 52/152 (34%), Gaps = 30/152 (19%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 +D R V A AGSGKT L RV L+ P LL LT ++ AA EM R + Sbjct: 41 AAVADDHRPLLVIAGAGSGKTSTLAHRVAHLIADGVDPQRLLLLTFSRRAAQEMERRAGQ 100 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 ++ L E P T H ++ Sbjct: 101 VLAKVLGLKSERP------------------------------PALPWAGTFHGIGARLL 130 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 +++ + + +F I D ++ L+ + Sbjct: 131 REYAQQIGLDENFTIHDRGDAEDLMGLVRHEL 162 >gi|254250937|ref|ZP_04944255.1| UvrD/REP helicase [Burkholderia dolosa AUO158] gi|124893546|gb|EAY67426.1| UvrD/REP helicase [Burkholderia dolosa AUO158] Length = 714 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ ++E + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 23 GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 80 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 81 AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 115 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 116 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 152 >gi|269123730|ref|YP_003306307.1| UvrD/REP helicase [Streptobacillus moniliformis DSM 12112] gi|268315056|gb|ACZ01430.1| UvrD/REP helicase [Streptobacillus moniliformis DSM 12112] Length = 735 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 57/161 (35%), Gaps = 40/161 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L + ++ A + A AGSGKT L ++ ++ N +P +L LT T A Sbjct: 4 LDNLNTEQRQAAKLVEGQTLILAGAGSGKTRTLTFKIAYMIKEKNINPRNILALTFTNKA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ + + Sbjct: 64 AKEMKERVETLVGD---------------------------------------NNEILIS 84 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+F +++ + T++F I D K +I++ KS Sbjct: 85 TFHSFAVRLLRTYSERIGYTNNFNIYDNNDQKSIIKKILKS 125 >gi|268592938|ref|ZP_06127159.1| ATP-dependent DNA helicase Rep [Providencia rettgeri DSM 1131] gi|291311730|gb|EFE52183.1| ATP-dependent DNA helicase Rep [Providencia rettgeri DSM 1131] Length = 674 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q V A AGSGKT ++ ++ L+ P + +T T AA EM Sbjct: 4 NPSQQQAVEFVDGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPRQIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR L+ + T H Sbjct: 64 KERVAQTLGK--------------------------KEARGLI-----------ISTFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ I ++F++ D++ L++E L ++ + LK+ I Sbjct: 87 LGLEIIKREYKALGIKANFSLFDDQDQMALLKELTFDLLE----EDKDLLKQLISAISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|303247358|ref|ZP_07333631.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ] gi|302491272|gb|EFL51161.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ] Length = 725 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 82/204 (40%), Gaps = 39/204 (19%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 +++ A V A AGSGKT +V R+ L+ P+ +L LT T+ AA EM Sbjct: 8 NPAQRQAALTTEGPMLVIAGAGSGKTRTIVYRLAHLVSDGVDPAAILLLTFTRKAAQEM- 66 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 +++A LL + T HAF Sbjct: 67 ----------------------------------LTRAGMLLAMGPSGVASVSGGTFHAF 92 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 A ++++ A F + D+ S+ ++ +A K TL D + K A +L + Sbjct: 93 AFATLRRYHAAAGFPDGFTVLDQADSEDILGQA-KDTLGIGKGDRSFPRKSAVLGLLSKA 151 Query: 200 NDEDIETLISDIISNRTALKLIFF 223 +++++ + D++S R A L+ + Sbjct: 152 RNKELD--VGDVLS-REAFHLLPY 172 >gi|167623786|ref|YP_001674080.1| exodeoxyribonuclease V subunit beta [Shewanella halifaxensis HAW-EB4] gi|167353808|gb|ABZ76421.1| exodeoxyribonuclease V, beta subunit [Shewanella halifaxensis HAW-EB4] Length = 1240 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 12/157 (7%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHP---STLLCLTHTKAAAAEMSHRVLEI 85 S + A+AG+GKT + +RLLL + P +L +T T AA E+ R+ + Sbjct: 34 GGSRLIEASAGTGKTFTIAGLYVRLLLGHGIESPLTCEQILVVTFTNAATGELRDRIRKK 93 Query: 86 IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I A+ + E+ ++S+++ AR L L++ + TIH FC+ I+ Sbjct: 94 IQLAYRRFIGLEVDDELINALYAATDESELAIARKRLDLALKSLDEAAIFTIHGFCQRIL 153 Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLAS 179 E+++ S F + D E + A + Sbjct: 154 ADMAFESSLLFESEFTLDDSE----FLHHAVRDFWRE 186 >gi|251767077|ref|ZP_02265907.2| ATP-dependent DNA helicase Rep [Burkholderia mallei PRL-20] gi|243063896|gb|EES46082.1| ATP-dependent DNA helicase Rep [Burkholderia mallei PRL-20] Length = 738 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ +SE + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 42 GLNSAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 99 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 100 AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 134 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 135 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 171 >gi|149024889|ref|ZP_01836290.1| methionine aminopeptidase [Streptococcus pneumoniae SP23-BS72] gi|147929512|gb|EDK80506.1| methionine aminopeptidase [Streptococcus pneumoniae SP23-BS72] Length = 763 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|149003797|ref|ZP_01828629.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP14-BS69] gi|225861053|ref|YP_002742562.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae Taiwan19F-14] gi|237650760|ref|ZP_04525012.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CCRI 1974] gi|237822347|ref|ZP_04598192.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CCRI 1974M2] gi|298230846|ref|ZP_06964527.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255795|ref|ZP_06979381.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502897|ref|YP_003724837.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae TCH8431/19A] gi|303254202|ref|ZP_07340314.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS455] gi|303259750|ref|ZP_07345725.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP-BS293] gi|303262925|ref|ZP_07348860.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP14-BS292] gi|303264888|ref|ZP_07350804.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS397] gi|303266868|ref|ZP_07352746.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS457] gi|303268905|ref|ZP_07354690.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS458] gi|147758243|gb|EDK65245.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP14-BS69] gi|225727044|gb|ACO22895.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae Taiwan19F-14] gi|298238492|gb|ADI69623.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae TCH8431/19A] gi|301802021|emb|CBW34750.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae INV200] gi|302598873|gb|EFL65907.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS455] gi|302635902|gb|EFL66402.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP14-BS292] gi|302638955|gb|EFL69415.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP-BS293] gi|302641523|gb|EFL71885.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS458] gi|302643566|gb|EFL73835.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS457] gi|302645576|gb|EFL75807.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae BS397] gi|327389355|gb|EGE87700.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA04375] gi|332075421|gb|EGI85890.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae GA41301] Length = 763 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|312794911|ref|YP_004027833.1| ATP-dependent DNA helicase rep [Burkholderia rhizoxinica HKI 454] gi|312166686|emb|CBW73689.1| ATP-dependent DNA helicase rep (EC 3.6.1.-) [Burkholderia rhizoxinica HKI 454] Length = 714 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 26/153 (16%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78 ++ + V A AGSGKT ++ Q++ L+ P + +T T AAAEM Sbjct: 5 NPAQSAAVTYLDGPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAEM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + + ++ L V T H+ Sbjct: 65 RERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVCTFHS 99 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 I++Q + F+I D + +I+E Sbjct: 100 LGVQILRQEAAHVGLKPQFSIMDADDCFAMIQE 132 >gi|221202128|ref|ZP_03575163.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD2M] gi|221209064|ref|ZP_03582059.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD2] gi|221171059|gb|EEE03511.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD2] gi|221177922|gb|EEE10334.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD2M] Length = 781 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ ++E + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 90 GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 147 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 148 AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 182 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 183 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 219 >gi|183600255|ref|ZP_02961748.1| hypothetical protein PROSTU_03807 [Providencia stuartii ATCC 25827] gi|188020043|gb|EDU58083.1| hypothetical protein PROSTU_03807 [Providencia stuartii ATCC 25827] Length = 673 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 65/183 (35%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q V A AGSGKT ++ ++ L+ P + +T T AA EM Sbjct: 4 NPSQQQAVEFVDGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPRQIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR L+ + T H Sbjct: 64 KERVAQTLGR--------------------------KEARGLI-----------ISTFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ I ++F++ D++ L++E L ++ + L++ I Sbjct: 87 LGLEIIKREYKALGIKANFSLFDDQDQMALLKELTFDLLE----EDKDLLQQLISSISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|281355725|ref|ZP_06242219.1| Exodeoxyribonuclease V [Victivallis vadensis ATCC BAA-548] gi|281318605|gb|EFB02625.1| Exodeoxyribonuclease V [Victivallis vadensis ATCC BAA-548] Length = 1235 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 7/188 (3%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 + A AG+GKT+ + V+R +L P LL +T+T+AAAAE++ R+ ++++ Sbjct: 18 FLIEAAAGTGKTYNIQNLVVRAVLERDIPIEKLLVVTYTRAAAAELAGRIRQVLSGTLAA 77 Query: 93 SDEILSAE---ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 ++ L E ++ + + R L T L V TIH FC+ ++++ Sbjct: 78 LEKRLPPESGREAQLVARALETLTSEECRKRLRTALFDFDAATVTTIHGFCQKVLRENAF 137 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209 E+ I F+ + +L+E+ +++ A + L E L + Sbjct: 138 ESGI--LFSRELDNDCAELLEKLADDLYRREFYPDDDARHSALRQALLRQAGYTAERL-A 194 Query: 210 DIISNRTA 217 ++ R A Sbjct: 195 ELALRRIA 202 >gi|325473361|gb|EGC76556.1| ATP-dependent DNA helicase PcrA [Treponema denticola F0402] Length = 674 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 53/157 (33%), Gaps = 38/157 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 + + + A AGSGKT ++ R+ +L S +L LT T AA EM Sbjct: 9 NPEQFKAVTTINGPVLIIAGAGSGKTRVITFRIAHMLDKGIPQSQILALTFTNKAAKEMQ 68 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ E+ L V T HAF Sbjct: 69 ERIKELTGK--------------------------------------KLQNLTVSTFHAF 90 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 +++ + S+F+I DE +LI+E + Sbjct: 91 GVKVLRSHIDKIGWRSNFSIYDETDRNQLIKECGREL 127 >gi|148998353|ref|ZP_01825795.1| methionine aminopeptidase [Streptococcus pneumoniae SP11-BS70] gi|307067730|ref|YP_003876696.1| superfamily I DNA and RNA helicase [Streptococcus pneumoniae AP200] gi|147755750|gb|EDK62795.1| methionine aminopeptidase [Streptococcus pneumoniae SP11-BS70] gi|306409267|gb|ADM84694.1| Superfamily I DNA and RNA helicase [Streptococcus pneumoniae AP200] Length = 763 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|301800058|emb|CBW32653.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae OXC141] Length = 763 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|168576188|ref|ZP_02722082.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae MLV-016] gi|183577923|gb|EDT98451.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae MLV-016] Length = 763 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|149375448|ref|ZP_01893218.1| Exodeoxyribonuclease V, beta subunit [Marinobacter algicola DG893] gi|149360153|gb|EDM48607.1| Exodeoxyribonuclease V, beta subunit [Marinobacter algicola DG893] Length = 1234 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 82/222 (36%), Gaps = 27/222 (12%) Query: 22 SEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLL----------ANAHPSTLL 66 +E + DP S + A+AG+GKT L +RL+L P LL Sbjct: 2 TEAIRKLDPLTLPLRGSQLIEASAGTGKTFTLALLYVRLVLGHRTVAEPLGEGIMPPNLL 61 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPN--------KSDMSKAR 118 +T T+AA E+ R+ +T + L T + K P +D R Sbjct: 62 VVTFTEAATKELRDRIRARLTEAAALFAAEPDTADTTVMSKDPLVNLRNACPAADWPACR 121 Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 L+ E V TIH +C ++ + ++ S F E L+++ + Sbjct: 122 RKLLLAAEWMDEAAVSTIHGWCNRMLSEHAFDSG--SLFRQTLETSQTDLLDDVVRDYWR 179 Query: 179 SIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKL 220 + + EL + E + + +++ + AL + Sbjct: 180 TFIYPMPPELMGEVLDTW--KTPESLRQSVRNLLPHVDALPV 219 >gi|154249408|ref|YP_001410233.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1] gi|154153344|gb|ABS60576.1| UvrD/REP helicase [Fervidobacterium nodosum Rt17-B1] Length = 656 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 72/192 (37%), Gaps = 39/192 (20%) Query: 8 QEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66 + S D + SEQ A + + V A GSGKT ++ ++ LLL PS +L Sbjct: 16 SKDSNIEDFFKELDSEQRRAVMESNGKSVVIAGPGSGKTRVITYKIAYLLLNGVMPSEIL 75 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T+AAA EM R + K D+ Sbjct: 76 LVTFTRAAAREMIER------------------------AQIVTKKDL------------ 99 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + T H C +++++ + S+F I DEE +K L++ A+ + S ++ Sbjct: 100 --SDMMAGTFHHVCNLLLRKYGSSIGLKSNFTILDEEDAKDLMKIARSRYVTSKQMNKAF 157 Query: 187 ELKKAFYEILEI 198 Y I Sbjct: 158 PTHSELYSIYSY 169 >gi|313667279|ref|YP_004049680.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977] gi|313153910|gb|ADR37760.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977] Length = 889 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 67/166 (40%), Gaps = 18/166 (10%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT L QR L L + P + +T T AAAE+ R+ E + S Sbjct: 3 VIVASAGTGKTTRLTQRYLEHLEQH-PPQRVAAVTFTNKAAAELRERIFEALGRGSFYD- 60 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 P+ + + + +LE P + TIH+F +++ + Sbjct: 61 ------------FTPSPALAERLADYQVRVLEAP----IGTIHSFFGYLLRLTAPMLGLD 104 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 HF + D ++ E ++ + +E + A E+ + + Sbjct: 105 PHFEVIDPATARAWFLEEVRNLAIIEGAEVDETVTTALVELFKRRS 150 >gi|108762524|ref|YP_631669.1| ATP-dependent DNA helicase UvrD [Myxococcus xanthus DK 1622] gi|108466404|gb|ABF91589.1| ATP-dependent DNA helicase, UvrD/REP family [Myxococcus xanthus DK 1622] Length = 692 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 37/157 (23%) Query: 14 IDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID + EQL A + V A AGSGKT L RV R+L P+ +L LT T Sbjct: 19 IDYAALLNEEQLRAVEAGEGPVLVIAGAGSGKTRTLTFRVARMLERGVPPAGILLLTFTN 78 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM+ RV E+ A+ + R +L Sbjct: 79 KAAREMTRRVEELAGAFVDV-------------------------RRILG---------- 103 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T H +++Q+ +++F + D E ++ L+ Sbjct: 104 -GTFHHAAHVLLRQYAGVLGFSTNFTVLDREDARDLM 139 >gi|261337676|ref|ZP_05965560.1| UvrD/REP helicase family protein [Bifidobacterium gallicum DSM 20093] gi|270277115|gb|EFA22969.1| UvrD/REP helicase family protein [Bifidobacterium gallicum DSM 20093] Length = 1406 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 85/242 (35%), Gaps = 54/242 (22%) Query: 18 SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + T + + P + V A AGSGKT+ + +R++ L+ P +L LT T+ AA+ Sbjct: 5 TPTAEQAAIIEAPHDDTFLVVAGAGSGKTYTMTERIIHLIDQGVPPQHILGLTFTRKAAS 64 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV T H D +A K + V T Sbjct: 65 ELLQRVTSAYTKSLHADDTSNAARFMKPE---------------------------VLTY 97 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML--DNNEELKKAFYE 194 AF + I++++ L + E + +LI + + + ++ + + Sbjct: 98 DAFFQGIVRRYGLLVGFDQNVQPLSEAGAHQLISDVVDANMQQVLEASKDYGSFSTMVND 157 Query: 195 ILEISN------------------------DEDIETLISDIISNRTALKLIFFFFSYLWR 230 + +SN D+ L+ ++I R + I F S R Sbjct: 158 VYALSNNIASSMIGGDCHTFDQAVQRVHEWDQAFLDLLDELIGERELPEKIPNFKSVPKR 217 Query: 231 RK 232 K Sbjct: 218 TK 219 >gi|332181236|gb|AEE16924.1| UvrD/REP helicase [Treponema brennaborense DSM 12168] Length = 710 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 60/165 (36%), Gaps = 39/165 (23%) Query: 13 TIDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 +++L + EQ A + + + A AGSGKT ++ R+ +L S +L LT T Sbjct: 2 SVNLRDELNQEQYEAVTTTEGALLIIAGAGSGKTRVITFRIAHMLDKGIPQSQILALTFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV E L Sbjct: 62 NKAAREMEERVKEHTGK--------------------------------------KLQNL 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T HAF I++Q + +F+I DE +LI+E + Sbjct: 84 TVSTFHAFGVKILRQDIEQLGWRPNFSIYDETDRNQLIKETGREL 128 >gi|221214244|ref|ZP_03587216.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD1] gi|221165899|gb|EED98373.1| ATP-dependent DNA helicase Rep [Burkholderia multivorans CGD1] Length = 745 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ ++E + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 54 GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 111 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 112 AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 146 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 147 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 183 >gi|298530797|ref|ZP_07018199.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1] gi|298510171|gb|EFI34075.1| UvrD/REP helicase [Desulfonatronospira thiodismutans ASO3-1] Length = 713 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 39/165 (23%) Query: 13 TIDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 ID QL A TR V A AGSGKT +V R+ L+ P ++L LT T Sbjct: 1 MIDYEKSLNPAQLEAVTTTRGPVLVIAGAGSGKTRTIVYRLAYLVEQGVPPESILLLTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + AA++M + +A LL + G Sbjct: 61 RKAASQM-----------------------------------LRRAGELLNREMGMVSG- 84 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H F I+++F F++ D +++L + + Sbjct: 85 --GTFHGFSYMILKKFAPALGFPQGFSVMDAADAEELFKGVRNEL 127 >gi|212550653|ref|YP_002308970.1| exodeoxyribonuclease V beta subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548891|dbj|BAG83559.1| exodeoxyribonuclease V beta subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 1038 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 78/180 (43%), Gaps = 13/180 (7%) Query: 38 ANAGSGKTHILVQRVLRLLLANA---HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 A+AGSGKT+ LV ++ LL + + +L ++ TK A EM R+L + + ++ Sbjct: 9 ASAGSGKTYTLVLEYIKCLLISDFSDYFQYILAVSFTKDATNEMKERILSELYGLALNTN 68 Query: 95 EILSAEITKIQGKKPNKSDMS------KARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + + + +A+ TI+ L + TI +F + I++ Sbjct: 69 DSKRFRSSLQILWEEEGLHWDEKLINMRAKTAFQTIIHNYSRLNITTIDSFFQCIIRSLV 128 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN--EELKKAFYEILEISNDEDIET 206 E ++HF++ E ++++I E+ + + DN + L ++ + IE Sbjct: 129 RELGYSNHFSL--ETNTQRVIRESIHNVIEKSSHDNKLIKWLTIYVEHLINEGKNWRIEK 186 >gi|118594717|ref|ZP_01552064.1| UvrD/REP helicase [Methylophilales bacterium HTCC2181] gi|118440495|gb|EAV47122.1| UvrD/REP helicase [Methylophilales bacterium HTCC2181] Length = 1074 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 46/195 (23%), Positives = 92/195 (47%), Gaps = 19/195 (9%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVL 83 + A++P +S V+A AGSGKT +LV R+L+LL PS ++ +T TK AAA+M +++ Sbjct: 11 RERATNPLQSFVVNAPAGSGKTTLLVTRILKLLTIIEKPSEIIAITFTKKAAAQMRRKLI 70 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 +++ + ++ + K + N R +E+ + + TI + I Sbjct: 71 DVMGKNENKINDEVRTLALKAKENAIN-------RGWEANFIES---MDIITIDSLASKI 120 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 +++ P+ ++S F E + EEA K T+ + ++ E L + Sbjct: 121 IRKAPI---LSSSFFANITEDPSEQYEEAAKRTILEMNENDME-----LITFLNYDT-KK 171 Query: 204 IETLISDIISNRTAL 218 I++ + +++ R Sbjct: 172 IKSYLIELLKKRDQW 186 >gi|53724405|ref|YP_104505.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 23344] gi|121598749|ref|YP_994582.1| ATP-dependent DNA helicase Rep [Burkholderia mallei SAVP1] gi|124385848|ref|YP_001027516.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10229] gi|126450982|ref|YP_001082587.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10247] gi|238561590|ref|ZP_00441881.2| ATP-dependent DNA helicase Rep [Burkholderia mallei GB8 horse 4] gi|254174927|ref|ZP_04881588.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 10399] gi|254201583|ref|ZP_04907947.1| ATP-dependent DNA helicase Rep [Burkholderia mallei FMH] gi|254206917|ref|ZP_04913268.1| ATP-dependent DNA helicase Rep [Burkholderia mallei JHU] gi|254357473|ref|ZP_04973747.1| ATP-dependent DNA helicase Rep [Burkholderia mallei 2002721280] gi|52427828|gb|AAU48421.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 23344] gi|121227559|gb|ABM50077.1| ATP-dependent DNA helicase Rep [Burkholderia mallei SAVP1] gi|124293868|gb|ABN03137.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10229] gi|126243852|gb|ABO06945.1| ATP-dependent DNA helicase Rep [Burkholderia mallei NCTC 10247] gi|147747477|gb|EDK54553.1| ATP-dependent DNA helicase Rep [Burkholderia mallei FMH] gi|147752459|gb|EDK59525.1| ATP-dependent DNA helicase Rep [Burkholderia mallei JHU] gi|148026537|gb|EDK84622.1| ATP-dependent DNA helicase Rep [Burkholderia mallei 2002721280] gi|160695972|gb|EDP85942.1| ATP-dependent DNA helicase Rep [Burkholderia mallei ATCC 10399] gi|238524389|gb|EEP87822.1| ATP-dependent DNA helicase Rep [Burkholderia mallei GB8 horse 4] Length = 700 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ +SE + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNSAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133 >gi|42561294|ref|NP_975745.1| ATP-dependent DNA helicase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492792|emb|CAE77387.1| ATP-dependent DNA helicase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321313|gb|ADK69956.1| putative ATP-dependent DNA helicase PcrA [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 722 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 44/226 (19%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 L+ S+QL A + + + A AGSGKT ++ ++ L+ + P+ +L +T T Sbjct: 6 LLDLLNSQQLAAVLNTDKPVRIIAGAGSGKTRVITTKIAYLIEKKDIDPTRILAVTFTNK 65 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RVL+ ITK Q K P + Sbjct: 66 AAKEMKERVLQ----------------ITKNQKKSP----------------------FI 87 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T HA+C +++ + F I D + K++I+ A K + + ++ + K Sbjct: 88 STFHAWCSKVLRIDGKHVGLKDKFLIIDSDDQKRIIKNALKESNIELSENDKKTFDKKIL 147 Query: 194 EILEISNDE--DIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 ++ +E D + I + S +R + + + L + I+ Sbjct: 148 YKIKEWKEELVDPDEAILNANSTYDRNSAIIYKLYQETLLKNNSID 193 >gi|86132275|ref|ZP_01050870.1| UvrD/REP helicase [Dokdonia donghaensis MED134] gi|85817194|gb|EAQ38377.1| UvrD/REP helicase [Dokdonia donghaensis MED134] Length = 778 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 52/157 (33%), Gaps = 37/157 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 +++ + V A AGSGKT +L R+ L+ +L LT T AA EM Sbjct: 13 NDAQRAPTLHKDGALIVIAGAGSGKTRVLTMRIAYLMSQGVDAFNILSLTFTNKAAREMK 72 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ I+ L + T H+ Sbjct: 73 KRIAGIVGN-------------------------------------NEAKNLWMGTFHSI 95 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 I++ + S+F I D + S++LI K Sbjct: 96 FAKILRIEADKLGYPSNFTIYDTQDSQRLISAIIKEM 132 >gi|281425747|ref|ZP_06256660.1| ATP-dependent DNA helicase PcrA [Prevotella oris F0302] gi|281400155|gb|EFB30986.1| ATP-dependent DNA helicase PcrA [Prevotella oris F0302] Length = 761 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 39/160 (24%) Query: 19 QTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAA 76 + Q A + V A AGSGKT +L ++ L+ P ++L LT T AA Sbjct: 4 ELNEGQRAAVEYCDGPQLVIAGAGSGKTRVLTYKIAYLIDEKQFEPWSILALTFTNKAAN 63 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ +++ + R+L + T Sbjct: 64 EMRSRIGKVVGQ--------------------------DRTRYLYM-----------GTF 86 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ I++ + T F I DE S+ L++ K Sbjct: 87 HSIFSRILRIEAEKLGYTKQFTIYDEADSRSLLKNIIKEM 126 >gi|160902262|ref|YP_001567843.1| UvrD/REP helicase [Petrotoga mobilis SJ95] gi|160359906|gb|ABX31520.1| UvrD/REP helicase [Petrotoga mobilis SJ95] Length = 706 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 41/186 (22%) Query: 16 LISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 ++ EQ A RS V A GSGKT ++ ++ LL P +L +T T+A Sbjct: 61 FENELDEEQREAVIKSEGRSIIV-AGPGSGKTRVITYKIAYLLNNGVEPENILLVTFTRA 119 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV + + Sbjct: 120 AAREMIERVKNVTNR--------------------------------------NIDKMLA 141 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +I++++ + ++++I D+E SK L++ AK + I + ++ Sbjct: 142 GTFHHVCNSILRKYATLLDYKNNYSILDKEDSKDLLKMAKSEYIKEISDNYKLPKEEVIM 201 Query: 194 EILEIS 199 +I+ S Sbjct: 202 KIISYS 207 >gi|166157034|emb|CAO79491.1| putative UvrD/REP helicase [uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11] Length = 710 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 69/198 (34%), Gaps = 44/198 (22%) Query: 18 SQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 ++ EQL A + V A AG+GKT ++ +R+ L+ N P +L LT T+ AA Sbjct: 9 TELNEEQLKAVKHKSGPVLVVAGAGTGKTRVITERIRYLIKEKNVDPQEILALTFTEKAA 68 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV +I+ V T Sbjct: 69 QEMVDRVGDIMPLGYEEP--------------------------------------WVYT 90 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM--LDNNEELKKAFY 193 H+F + I+++ +E I + I L+ + L N + A Sbjct: 91 FHSFADRILKEKGIEIGIDPSYKILSPSDQWLLLRKNLFDLKLKYFRPLGNPTKFISAIL 150 Query: 194 EILEISNDEDI--ETLIS 209 + DE++ E L+ Sbjct: 151 TFISRLQDENVSPEELLE 168 >gi|168494521|ref|ZP_02718664.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC3059-06] gi|225854583|ref|YP_002736095.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae JJA] gi|183575566|gb|EDT96094.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC3059-06] gi|225724045|gb|ACO19898.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae JJA] Length = 763 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + + I+ Sbjct: 136 ERTILGTISNAKNNLIDD 153 >gi|257094702|ref|YP_003168343.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047226|gb|ACV36414.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 704 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 64/173 (36%), Gaps = 43/173 (24%) Query: 15 DLISQTKSEQLLAS--------DPT------RSAWVSANAGSGKTHILVQRVLRLLLANA 60 D +++ + Q A+ DP+ R+ + A AGSGKT L RV L+ A Sbjct: 14 DPLARLNAAQRAAATFGIGRPADPSGEAPDSRALLIIAGAGSGKTSTLAHRVAHLVAQGA 73 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 P +L LT ++ AA+EM+ RV I+ R Sbjct: 74 DPGRILLLTFSRRAASEMTRRVERILVR-----------------------------RAA 104 Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T TP T H +++++ + F I D + S L+ + Sbjct: 105 DRTPAGTPALAWSGTFHGIGARLLREYAGRIGLDPAFTIHDRQDSGDLMNLVR 157 >gi|115524887|ref|YP_781798.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53] gi|115518834|gb|ABJ06818.1| UvrD/REP helicase [Rhodopseudomonas palustris BisA53] Length = 700 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 58/172 (33%), Gaps = 35/172 (20%) Query: 11 SETIDLISQTKSEQLLASDPT------RSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64 S + +Q A + V A AGSGKT+ L RV LL+ A P Sbjct: 17 SPIAAYLDDLNPQQRCAVEHGIDGSLASPLLVIAGAGSGKTNTLAHRVAHLLVHGADPRR 76 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 LL +T ++ AA+EM RV I I++ ++ Sbjct: 77 LLLMTFSRRAASEMIRRVERIARKAIGEPAAIMTGAMS---------------------- 114 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H ++++ + + F I D E + LI + Sbjct: 115 -------WAGTFHGVGARLLRERAEQLGLDPGFTIHDREDAADLINLVRHQL 159 >gi|149177805|ref|ZP_01856404.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797] gi|148843295|gb|EDL57659.1| ATP-dependent DNA helicase [Planctomyces maris DSM 8797] Length = 657 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 53/161 (32%), Gaps = 37/161 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L S +++ AS + V A AG+GKT ++ R++ L+ P +L +T T AA Sbjct: 13 LASLNPAQREAASTLSGPLLVLAGAGTGKTRVITYRMVELIRTGVAPDKILSVTFTNKAA 72 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ ++ P + T Sbjct: 73 KEMQERMAALLGK-------------------------------------RLPAKPFIST 95 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ C I+++ F I D + A + Sbjct: 96 FHSLCVRILREEISLLGYPEKFVIYDRGDQESAARTALREI 136 >gi|219685122|ref|ZP_03539942.1| ATP-dependent DNA helicase PcrA [Borrelia garinii Far04] gi|219673218|gb|EED30237.1| ATP-dependent DNA helicase PcrA [Borrelia garinii Far04] Length = 658 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 77/232 (33%), Gaps = 65/232 (28%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S + + + + + A AGSGKT ++ R+ LLL +L LT T AA E Sbjct: 9 SLNQFQYEAVTTIEGALLIIAGAGSGKTRVVTHRIAYLLLKGIAQKEILALTFTNKAANE 68 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ +I+ + L V T H Sbjct: 69 MKDRIKKILKSP--------------------------------------LSNLMVSTFH 90 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS---------------------- 175 AF +++ F+I D+ L++E Sbjct: 91 AFGLFFLKENYKLLGYKKSFSIYDDNDRISLLKEILLDEGLLNKKVSLNSLSNTISLLKN 150 Query: 176 --TLASIMLDNNEELKKAFYEILEISNDEDIETLI---SDIISNRTALKLIF 222 + + + + + K + E L + N D + LI +++SN + ++ + Sbjct: 151 GILTLNDLKEEDISIFKLYEERLRLYNSFDFDDLILKPKELLSNNSDIRSKY 202 >gi|254246736|ref|ZP_04940057.1| UvrD/REP helicase [Burkholderia cenocepacia PC184] gi|124871512|gb|EAY63228.1| UvrD/REP helicase [Burkholderia cenocepacia PC184] Length = 775 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ ++E + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 84 GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 141 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 142 AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 176 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 177 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 213 >gi|134294278|ref|YP_001118013.1| UvrD/REP helicase [Burkholderia vietnamiensis G4] gi|134137435|gb|ABO53178.1| UvrD/REP helicase [Burkholderia vietnamiensis G4] Length = 695 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ ++E + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133 >gi|330995679|ref|ZP_08319577.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841] gi|329574738|gb|EGG56299.1| UvrD/REP helicase [Paraprevotella xylaniphila YIT 11841] Length = 1082 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 16/210 (7%) Query: 38 ANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKAAAAEMSHRVLEII-TAWSHLS 93 A+AGSGKT L + ++ L+ S +L +T T A EM R+L+ + W L Sbjct: 10 ASAGSGKTFTLAIQYIKTLIEQESRHAYSHILAVTFTNKATTEMKDRILQQLYGIWKGLP 69 Query: 94 D-----EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 E L E+ + P + S+A L IL +V+TI +F +++++ Sbjct: 70 SSTNYLESLQKELRADSIELPEEEIRSRAGAALCHILHDYNRFRVETIDSFFQSVLKNLA 129 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208 E ++T++ + + K+++ A + + L ILE ND Sbjct: 130 HELSLTANLKV--DLNDKEVLHAAVDRIMERLHLTP-----TVLNWILEYVNDRISNNER 182 Query: 209 SDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 DI + F +YL R + + L Sbjct: 183 WDIAREVKSFAAWIFKEAYLAREHEMREVL 212 >gi|237814293|ref|YP_002898744.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei MSHR346] gi|237505661|gb|ACQ97979.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei MSHR346] Length = 695 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ +SE + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNSAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133 >gi|311696604|gb|ADP99477.1| exodeoxyribonuclease V, beta subunit [marine bacterium HP15] Length = 1234 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 47/209 (22%), Positives = 82/209 (39%), Gaps = 23/209 (11%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLL---------CLTHTKAAA 75 LA SA + A+AG+GKT + +RL+L P + L +T T+AA Sbjct: 15 LALTLNGSALIEASAGTGKTFTIAILYVRLVLGQGQSPDSPLQNLLPPNLLVVTFTEAAT 74 Query: 76 AEMSHRVLEIITA----WSHLSDEILSAEITKI-----QGKKPNKSDMSKARHLLITILE 126 E+ R+ +T +S DE T + P+ + + R L+ E Sbjct: 75 KELRDRIRTRLTQAAEVFSDAPDEPNPPAETALIYQLRDESYPDPASWPECRKKLLLAAE 134 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 V TIH+FC ++ + ++ S F + E +L++E + + + Sbjct: 135 WMDEAAVSTIHSFCNRMLSEHAFDSG--SLFKLTLETDQSELLDEVARDYWRTFVYPLPP 192 Query: 187 ELKKAFYEILEISND--EDIETLISDIIS 213 L + D + + LI D +S Sbjct: 193 ALMDEALSHWKTPGDLRQGVRNLIDDPLS 221 >gi|253991620|ref|YP_003042976.1| ATP-dependent DNA helicase Rep [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783070|emb|CAQ86235.1| Rep helicase, a single-stranded DNA dependent ATPase [Photorhabdus asymbiotica] Length = 675 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ + P + +T T AA EM Sbjct: 4 NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRICGYQPRHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + + GL + T H Sbjct: 64 KERVAQTLGR-------------------------------------QEAKGLMISTFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + S+F++ DE+ L+++ L ++ E L+K I Sbjct: 87 LGLEIIKREYKALGMKSNFSLFDEQDQMALLKDLTADLLE----EDKELLQKLIASISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|221231829|ref|YP_002510981.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae ATCC 700669] gi|220674289|emb|CAR68831.1| putative ATP-dependent DNA helicase [Streptococcus pneumoniae ATCC 700669] Length = 763 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + + I+ Sbjct: 136 ERTILGTISNAKNNLIDD 153 >gi|110834680|ref|YP_693539.1| exodeoxyribonuclease V subunit beta [Alcanivorax borkumensis SK2] gi|110647791|emb|CAL17267.1| Exodeoxyribonuclease V beta chain [Alcanivorax borkumensis SK2] Length = 1206 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 68/162 (41%), Gaps = 15/162 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT L LRL+L + P +L +T T+AA E+ R+ + Sbjct: 18 LIEASAGTGKTFTLAALYLRLVLGHGGENGFSRPLLPPEILVVTFTEAATEELRERIRDR 77 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR----HLLITILETPGGLKVQTIHAFCE 141 + + + + + + + ++ R L + + TIH FC Sbjct: 78 LADAARIFADPHAEADDPVLAALLSDYSENEQRTSCAQRLDAAAQWMDEAAIYTIHGFCN 137 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 +++Q ++ S F++ +E + + + A + S++ Sbjct: 138 RMLKQHAFDSG--SLFSLELQEDASEEQQLAARDYWRSVISQ 177 >gi|303237389|ref|ZP_07323959.1| UvrD/REP helicase [Prevotella disiens FB035-09AN] gi|302482776|gb|EFL45801.1| UvrD/REP helicase [Prevotella disiens FB035-09AN] Length = 1112 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 4/149 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSH-LSDE 95 A+AGSGKT L + LL+ + + +L +T T A EM R+L + + L Sbjct: 13 ASAGSGKTFTLAVEYISLLVKDPNNYRQILAVTFTNKATQEMKMRILSQLFGIAKGLKSS 72 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + K + + S A L ++ ++ TI AF + I++ E +T+ Sbjct: 73 DAYLQQVKNKTGLNEATIKSNATTALTLLIHKYNEFRIHTIDAFFQQILRNLAHELGLTA 132 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDN 184 + + + +K + +A + + + Sbjct: 133 NLKV--DLNNKDIEGKAVDQMIEELQEEQ 159 >gi|126668208|ref|ZP_01739169.1| exodeoxyribonuclease V, beta subunit [Marinobacter sp. ELB17] gi|126627357|gb|EAZ97993.1| exodeoxyribonuclease V, beta subunit [Marinobacter sp. ELB17] Length = 1241 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 80/202 (39%), Gaps = 24/202 (11%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-----------TLLCLTHTKAAAAEMS 79 S + A+AG+GKT + +RL+L + P LL +T T AA E+ Sbjct: 19 NGSTLIEASAGTGKTFTIAILYVRLVLGHGQPEGGALAAGLVPPNLLVVTFTDAATKELR 78 Query: 80 HRVLEIITAWSHL-----SDEILSAEITKIQGKK----PNKSDMSKARHLLITILETPGG 130 R+ +T + + + +AE I + P+ + R L+ E Sbjct: 79 DRIRIRLTQAAEVFSNVAGNTTPTAETALIHQLRDDSYPDPATWPDCRKKLLLAAEWMDE 138 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 V TIHA+C ++ + ++ S F + E L++E + + + + EL Sbjct: 139 AAVSTIHAWCNRMLSEHAFDSG--SLFRLTLETDQSSLMDEVVRDYWRTFIYPLSPELMD 196 Query: 191 AFYEILEISNDEDIETLISDII 212 + + ++ + +++ Sbjct: 197 EVID--HWKTPDQLQKAVRNLL 216 >gi|306829578|ref|ZP_07462768.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis ATCC 6249] gi|304428664|gb|EFM31754.1| ATP-dependent DNA helicase PcrA [Streptococcus mitis ATCC 6249] Length = 763 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 70/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKMVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R G P D Sbjct: 59 TFTNKAAREMKER----------------------AYGLNPATQDCL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRHDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKWN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|270297067|ref|ZP_06203266.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273054|gb|EFA18917.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 1112 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 74/165 (44%), Gaps = 13/165 (7%) Query: 27 ASDPTRSAWVSANAGSGKTHIL-VQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 A++ A+AGSGKT L V+ + L++ +L +T T A AEM R+L Sbjct: 10 AANYMELLVYKASAGSGKTFTLAVEYIKHLIINPHAYRQILAVTFTNKATAEMKERILTQ 69 Query: 86 ITAW------SHLSDEILSAEITKIQGK----KPNKSDMSKARHLLITILETPGGLKVQT 135 + S E + KI+G+ +K +A L +L +V+T Sbjct: 70 LYGIWKGAPSSEAYLERIKNYKLKIKGEGGGGLTDKEIRQRAGIALQYMLHDYSRFRVET 129 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 I +F +++M+ E ++ + +I E + +++ +A S + + Sbjct: 130 IDSFFQSVMRNLARELELSPNLSI--ELNNSEVLSDAVDSLIEKL 172 >gi|223939230|ref|ZP_03631111.1| UvrD/REP helicase [bacterium Ellin514] gi|223892062|gb|EEF58542.1| UvrD/REP helicase [bacterium Ellin514] Length = 692 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 55/163 (33%), Gaps = 39/163 (23%) Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D + +Q A + P + V A AGSGKT L RV LL +L LT T Sbjct: 18 VDYARELNEQQHAAVTAPPGPSLVIAGAGSGKTRTLTFRVGFLLEQGIPADRILLLTFTN 77 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV +++ + L Sbjct: 78 KAAREMMRRVSDLLG--------------------------------------QDLPSLW 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ I++Q F+I D E +K L++ Sbjct: 100 GGTFHSIGNRILRQHAPLLGYQRDFSIMDREDAKDLVDACVAE 142 >gi|15836655|ref|NP_297343.1| DNA-dependent helicase II [Xylella fastidiosa 9a5c] gi|9104818|gb|AAF82863.1|AE003859_4 DNA helicase II [Xylella fastidiosa 9a5c] Length = 728 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 63/167 (37%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLT 69 S +D ++Q + E + A+ + A AGSGKT +L R++ L + +++ +T Sbjct: 4 SHVLDHLNQNQREAVAAA--PGHYLILAGAGSGKTRVLTHRIVWLNEVHGVPTHSMMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA E+ R+ + + Sbjct: 62 FTNKAAGEIQQRID--------------------------------------LQLRHGKR 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G+ + T H+ +++ +A + +F + D + +L++ +S Sbjct: 84 GMWIGTFHSLAHRLLRLHWNDATLPENFQVIDSDDQLRLVKRVIQSL 130 >gi|325279393|ref|YP_004251935.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712] gi|324311202|gb|ADY31755.1| UvrD/REP helicase [Odoribacter splanchnicus DSM 20712] Length = 1054 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 6/167 (3%) Query: 38 ANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L R + + A +L +T T A EM R++ + + Sbjct: 7 ASAGSGKTFALTLEYFRTIFASPAEYKNILAVTFTNKATEEMKSRIINELHRLADGKTSD 66 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 + + G ++ ++A L +L G L V TI F + I++ F E I Sbjct: 67 YGEALKQEFGFT-DEQLKNRAVLLRTMLLHDYGRLAVTTIDRFFQRIIKAFTRELGIFPG 125 Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + + E S ++ +A + + +N LK E++ + +E Sbjct: 126 YNV--ELDSDFVLLKAVDKVMQQV--KDNPGLKNWISELMSSNVEEG 168 >gi|323527814|ref|YP_004229967.1| UvrD/REP helicase [Burkholderia sp. CCGE1001] gi|323384816|gb|ADX56907.1| UvrD/REP helicase [Burkholderia sp. CCGE1001] Length = 699 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 28/162 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ +SE + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNPAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++Q + F+I D + +I+E ST Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQEQVGST 138 >gi|257126152|ref|YP_003164266.1| UvrD/REP helicase [Leptotrichia buccalis C-1013-b] gi|257050091|gb|ACV39275.1| UvrD/REP helicase [Leptotrichia buccalis C-1013-b] Length = 735 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 56/168 (33%), Gaps = 41/168 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 S +D +++ ++ A + A AGSGKT + R+ ++ P +L L Sbjct: 1 MSSILDELNE--EQRKAAEKIEGPVLILAGAGSGKTRTVTYRIAHMVKEIGISPLNILAL 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R +I Sbjct: 59 TFTNKAAREMKERAAALIG--------------------------------------HEA 80 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L V T H+F +++ + +F I D + K +I + KK Sbjct: 81 NNLVVSTFHSFSVRLLKTYSERIGYGRNFNIYDVDDQKSIITKIKKEM 128 >gi|170698717|ref|ZP_02889782.1| UvrD/REP helicase [Burkholderia ambifaria IOP40-10] gi|171321304|ref|ZP_02910265.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5] gi|170136342|gb|EDT04605.1| UvrD/REP helicase [Burkholderia ambifaria IOP40-10] gi|171093411|gb|EDT38595.1| UvrD/REP helicase [Burkholderia ambifaria MEX-5] Length = 695 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ ++E + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133 >gi|254194688|ref|ZP_04901119.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei S13] gi|254298751|ref|ZP_04966202.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 406e] gi|157808603|gb|EDO85773.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 406e] gi|169651438|gb|EDS84131.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei S13] Length = 733 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ +SE + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 42 GLNSAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 99 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 100 AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 134 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 135 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 171 >gi|15639096|ref|NP_218542.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025336|ref|YP_001933108.1| Rep helicase, single-stranded DNA-dependent ATPase [Treponema pallidum subsp. pallidum SS14] gi|3322363|gb|AAC65097.1| rep helicase, single-stranded DNA-dependent ATPase (rep) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017911|gb|ACD70529.1| Rep helicase, single-stranded DNA-dependent ATPase [Treponema pallidum subsp. pallidum SS14] gi|291059520|gb|ADD72255.1| ATP-dependent helicase PcrA [Treponema pallidum subsp. pallidum str. Chicago] Length = 657 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 55/161 (34%), Gaps = 38/161 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L + ++ + + A AGSGKT ++ R+ +L S +L LT T AA Sbjct: 2 LSTLNPEQRRAVTTLEGPLLIIAGAGSGKTRVITARIAYMLECGILQSRILALTFTNKAA 61 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EMS R+ + + V T Sbjct: 62 HEMSERIKALTGKPLRNT--------------------------------------TVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 HAF I+++ +F+I DE + LI EA K Sbjct: 84 FHAFGVTILREHIHVLGWRKNFSIYDENDKRALIREAAKEV 124 >gi|325524957|gb|EGD02885.1| UvrD/REP helicase [Burkholderia sp. TJI49] Length = 696 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ ++E + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133 >gi|167847823|ref|ZP_02473331.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei B7210] Length = 639 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ +SE + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNSAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133 >gi|2462092|emb|CAA72103.1| ATP-dependent nuclease subunit A [Bacillus cereus ATCC 10987] Length = 254 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 70/177 (39%), Gaps = 32/177 (18%) Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 LL +T T AAA EM +R+ E + K+ +P + K L Sbjct: 5 QVDRLLVVTFTNAAAQEMKNRIGEAL---------------EKVLIDEPGSQHIRKQLSL 49 Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 L + TIH+FC +++ + ++ F IA++ +++ L EE L Sbjct: 50 L-------NKASISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEE 102 Query: 181 MLDNNEELKKAFYEILE-ISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 + + F+E+++ ++D + L R L L ++ K ++K Sbjct: 103 YGIEDNTI---FFELVDRYTSDRSDDDL------QRMILALHTESRAHPNPEKWLDK 150 >gi|172059215|ref|YP_001806867.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6] gi|171991732|gb|ACB62651.1| UvrD/REP helicase [Burkholderia ambifaria MC40-6] Length = 695 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ ++E + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133 >gi|118581858|ref|YP_903108.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379] gi|118504568|gb|ABL01051.1| ATP-dependent DNA helicase PcrA [Pelobacter propionicus DSM 2379] Length = 762 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 53/156 (33%), Gaps = 41/156 (26%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D + Q A + A AGSGKT ++ R+ L+ P +L +T T Sbjct: 1 MDFVKHLNQPQKSAVLHGEGPLLILAGAGSGKTRVITHRIAHLIHNHGVRPWNILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EMS RV ++ D L Sbjct: 61 NKAAREMSERVSRLLGG----GDAPL---------------------------------- 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKK 167 + T HA C I+++ S FAI DE ++ Sbjct: 83 -IATFHAACGRILRREIHHLGFDSSFAIYDERDCER 117 >gi|168491981|ref|ZP_02716124.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC0288-04] gi|183573779|gb|EDT94307.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae CDC0288-04] Length = 763 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 70/198 (35%), Gaps = 46/198 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ C I+++ +F I D + + L+ K L + LD + Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLM----KRILKQLNLDPKKRN 135 Query: 189 KKAFYEILEISNDEDIET 206 ++ + + ++ I+ Sbjct: 136 ERTILGTISNAKNDLIDD 153 >gi|162148662|ref|YP_001603123.1| putative DNA helicase II [Gluconacetobacter diazotrophicus PAl 5] gi|161787239|emb|CAP56832.1| putative DNA helicase II [Gluconacetobacter diazotrophicus PAl 5] Length = 699 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 58/172 (33%), Gaps = 39/172 (22%) Query: 15 DLISQTKSEQLLASDPTR----------SAWVSANAGSGKTHILVQRVLRLLLANAHPST 64 D +++ Q A V A AGSGKT+ L RV L+ P Sbjct: 13 DPLARLNPAQREAVTHGAGVAPDVGGSPPLLVIAGAGSGKTNTLAHRVAHLIATGTDPRR 72 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L LT ++ A+ EM+ RV I A L+ + Sbjct: 73 ILLLTFSRRASTEMTRRVERICRAVLGDKAGPLADAL----------------------- 109 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ +++++ + + F+I D E S L+ + Sbjct: 110 ------AWAGTFHSIGARLLREYAEQIGMDPAFSIHDREDSADLMNLVRHDL 155 >gi|115350193|ref|YP_772032.1| UvrD/REP helicase [Burkholderia ambifaria AMMD] gi|115280181|gb|ABI85698.1| UvrD/REP helicase [Burkholderia ambifaria AMMD] Length = 695 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ ++E + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133 >gi|304321353|ref|YP_003854996.1| DNA helicase II [Parvularcula bermudensis HTCC2503] gi|303300255|gb|ADM09854.1| DNA helicase II [Parvularcula bermudensis HTCC2503] Length = 775 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 72/201 (35%), Gaps = 44/201 (21%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 + + ++ ++ + E +L ++ + A AG+GKT L R+ LL++ A+P Sbjct: 15 TASDAPAYLEGLNPPQKEAVLTTE--GPVLMLAGAGTGKTRALTTRLAHLLISGRANPWD 72 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 LL +T T AA EM RV ++ Sbjct: 73 LLAVTFTNKAAREMRERVGVLVGDQVE--------------------------------- 99 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 G + T H+ I+++ +T F I D + +L K +++ +D Sbjct: 100 ----GMRWMGTFHSVAALILRRHAELVGLTPAFTIIDTDDQIRL----CKQVISAAGVDE 151 Query: 185 NEELKKAFYEILEISNDEDIE 205 + +L+ + + Sbjct: 152 KRWPGRGLAGVLDAWKNRGLR 172 >gi|57242577|ref|ZP_00370515.1| helicase, putative [Campylobacter upsaliensis RM3195] gi|57016862|gb|EAL53645.1| helicase, putative [Campylobacter upsaliensis RM3195] Length = 909 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 5/134 (3%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + L+L A +L +T TK A EM RV+E + Sbjct: 8 LALEASAGSGKTFALSMRFVALILNGAKIDEILAITFTKKATNEMKKRVIENFLTFDK-- 65 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 E + E+ K+ GK + + + + LK+ T A I++ F L + Sbjct: 66 KEAETKELCKLLGKDKEELIRLRDAKKEEFLRKN---LKIYTFDALFSQILRSFALNLGL 122 Query: 154 TSHFAIADEEQSKK 167 S F + Q + Sbjct: 123 MSDFESVENSQDVR 136 >gi|76809077|ref|YP_331538.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710b] gi|76578530|gb|ABA48005.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710b] Length = 733 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ +SE + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 42 GLNSAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 99 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 100 AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 134 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 135 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 171 >gi|325972063|ref|YP_004248254.1| UvrD/REP helicase [Spirochaeta sp. Buddy] gi|324027301|gb|ADY14060.1| UvrD/REP helicase [Spirochaeta sp. Buddy] Length = 1104 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 28/162 (17%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76 ++ + QL A + VSA AGSGKT +L R LRL+L A +L LT T+ AA Sbjct: 13 ARLDAHQLEAVHCDVNCVVSAGAGSGKTTVLSYRFLRLVLEGKAQVGEILTLTFTRKAAR 72 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ + K ++ L T + T+ Sbjct: 73 EMQERIHRHLLCC--------------------------KNDERIVGQLATFSEASISTL 106 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 +FC I++ + I F + D+EQ+ + L Sbjct: 107 DSFCSQIVRSDSIRYGIAQDF-VIDDEQNLRNARRCATELLD 147 >gi|315637850|ref|ZP_07893040.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter upsaliensis JV21] gi|315482091|gb|EFU72705.1| UvrD/REP family ATP-dependent DNA helicase [Campylobacter upsaliensis JV21] Length = 909 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 84/219 (38%), Gaps = 16/219 (7%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AGSGKT L R + L+L A +L +T TK A EM RV+E + Sbjct: 8 LALEASAGSGKTFALSMRFVALILNGAKIDEILAITFTKKATNEMKKRVIENFLTFDK-- 65 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 E + E+ K+ K + + + + LK+ T A I++ F L + Sbjct: 66 KEAETKELCKLLAKDKEELIRLRDAKKEEFLRKN---LKIYTFDALFSQILRSFALNLGL 122 Query: 154 TSHFA-IADEEQSKKLI---EEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL-- 207 S F I + + ++ ++ + + +E + F E+ + + ++L Sbjct: 123 MSDFESIENSQDVRRTFLKKLSKEELKKLATYILKIDEKEHFFSELESLYQNAYFKSLNI 182 Query: 208 -----ISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +S + S L+ F + + + Sbjct: 183 TNQPGLSKLQSAYDDLRKYCLSFDNKNLKSNFKSEKLHL 221 >gi|304312501|ref|YP_003812099.1| ATP-dependent exoDNAse (exonuclease V) β-subunit (contains helicaseand exonuclease domains) [gamma proteobacterium HdN1] gi|301798234|emb|CBL46456.1| ATP-dependent exoDNAse (exonuclease V) β-subunit (contains helicaseand exonuclease domains) [gamma proteobacterium HdN1] Length = 1272 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 12/162 (7%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH-------PSTLLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT + LRL+L + P +L +T T+AAA E+ R+ + Sbjct: 25 LIEASAGTGKTFTIAALYLRLILGHQSTLGRPLTPRDILVVTFTQAAAEELRGRIRARLY 84 Query: 88 AWSHLSDEIL---SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + + + + + + +A +LL E + TIHA+C+ ++ Sbjct: 85 EGAQAMRGVELPSESILCALYQEYEAQGMRERAGYLLQQAAENMDEAAIYTIHAWCQQVL 144 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 QQ + + F ++ K L+E + S E Sbjct: 145 QQHAFASG--ASFGKTLQQDEKVLLEVCVRDYWRSFFYSQGE 184 >gi|281420135|ref|ZP_06251134.1| putative UvrD/REP helicase domain protein [Prevotella copri DSM 18205] gi|281405935|gb|EFB36615.1| putative UvrD/REP helicase domain protein [Prevotella copri DSM 18205] Length = 1070 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 76/172 (44%), Gaps = 10/172 (5%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L + + L++AN A T+L +T T A EM R+L + +H E Sbjct: 10 ASAGSGKTFTLAREYMTLVIANPASYRTILAVTFTNKATEEMKMRILGKLYEIAHGLPEA 69 Query: 97 LS--AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +I + +K A L ++ +V TI F +++++ E ++T Sbjct: 70 NDYVNQIQQALPYLSSKQIQKNAESALHLLIHNYNYFRVMTIDTFFQSVLRNLARELDLT 129 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 ++ I E ++ + A + S+ E+ + + I++ + + Sbjct: 130 ANLRI--ELNDYQIEQHAVDELIESL-----EDTDRLLFWIMDYIKENIDDD 174 >gi|298706895|emb|CBJ25859.1| ATP-dependent DNA helicase [Ectocarpus siliculosus] Length = 1196 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 84/217 (38%), Gaps = 46/217 (21%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS- 63 ++F S D +++++ + + A + V A GSGKT +L +R+ L+ P+ Sbjct: 74 DAFYGASALDDELNESQRDAVFAE--VGAVRVVAGPGSGKTRVLTRRIAHLVRNVGAPAW 131 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 ++L +T TK A+ EM RV + + Sbjct: 132 SILAVTFTKKASEEMRARVRKTVGE----------------------------------- 156 Query: 124 ILETPGGLKVQTIHAFCEAIMQQF-----PLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 + G + + T H+ C ++++ + + F+I D E S++L+ + K Sbjct: 157 --DVSGQVALGTFHSICARLLRRHGDALPAVVPGLDGRFSIFDTEDSRRLLTDIIKEMGQ 214 Query: 179 SIMLDNNEELKKAFYEI-LEISNDEDIETLISDIISN 214 I ++ + ++ + +DI D++ Sbjct: 215 DIKEVKPNMMRSSISKLKSQGLGPQDIAKKSEDMLER 251 >gi|104779936|ref|YP_606434.1| exonuclease V subunit beta [Pseudomonas entomophila L48] gi|95108923|emb|CAK13619.1| exonuclease V, beta subunit [Pseudomonas entomophila L48] Length = 1223 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 79/214 (36%), Gaps = 31/214 (14%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT + LRL+L + P +L +T T AA E+ R+ Sbjct: 15 GSQLIEASAGTGKTFTISALYLRLILGHGGEQGFARELLPPQILVVTFTDAATKELRERI 74 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFC 140 + + + L + + + + + + L ++ V TIH +C Sbjct: 75 RTRLAEAARFFRDELDDADPLLHQLRDDYPQEHWPRCANRLEIAVQWMDEAAVSTIHGWC 134 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE------------- 187 + ++++ ++ S F + E +L+ + + E Sbjct: 135 QRMLREHAFDSG--SLFTQSLETDHSELLGQVMRDYWRRFCYGMRGEALAWVRGNWGSPD 192 Query: 188 -----LKKAFYEILEISNDEDIETLISDIISNRT 216 ++ F + + +D + + LI + RT Sbjct: 193 ALLPRIRPLFGRVRDAQDDAEPQALIEATLRQRT 226 >gi|295677216|ref|YP_003605740.1| UvrD/REP helicase [Burkholderia sp. CCGE1002] gi|295437059|gb|ADG16229.1| UvrD/REP helicase [Burkholderia sp. CCGE1002] Length = 731 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 62/173 (35%), Gaps = 35/173 (20%) Query: 12 ETIDLISQTKSEQLLASDPTRS--------AWVSANAGSGKTHILVQRVLRLLLANAHPS 63 +T +++ Q A + V A AGSGKT+ L RV L++ A P Sbjct: 31 DTAAWLAKLNDAQREAVEYGTDTPDALPGALLVIAGAGSGKTNTLAHRVANLVVKGADPQ 90 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L LT ++ AA EM+ RV I A + AR L Sbjct: 91 RILLLTFSRRAALEMTRRVTRITGAAATSVG----------------------ARAALAQ 128 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L T H+ +++++ + F I D E S L+ + Sbjct: 129 GLT-----WAGTFHSVGARLLREYADLIGLAPAFTINDREDSADLMNLVRHEL 176 >gi|260889954|ref|ZP_05901217.1| ATP-dependent DNA helicase PcrA [Leptotrichia hofstadii F0254] gi|260860560|gb|EEX75060.1| ATP-dependent DNA helicase PcrA [Leptotrichia hofstadii F0254] Length = 735 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 56/168 (33%), Gaps = 41/168 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 S +D +++ ++ A + A AGSGKT + R+ ++ P +L L Sbjct: 1 MSSILDELNE--EQRKAAEKIEGPVLILAGAGSGKTRTVTYRIAHMVKEIGISPLNILAL 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R +I Sbjct: 59 TFTNKAAREMKERATALIG--------------------------------------HEA 80 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L V T H+F +++ + +F I D + K +I + KK Sbjct: 81 NNLVVSTFHSFSVRLLKTYSERIGYGRNFNIYDVDDQKSIITKIKKDM 128 >gi|254467915|ref|ZP_05081321.1| UvrD/REP helicase, putative [beta proteobacterium KB13] gi|207086725|gb|EDZ64008.1| UvrD/REP helicase, putative [beta proteobacterium KB13] Length = 1015 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 80/207 (38%), Gaps = 15/207 (7%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 +S + + +S V A AGSGKT +L QR ++LL P +L +T T AAA Sbjct: 1 MSSNDIQNRIKCLDLKSIIVQAPAGSGKTELLTQRFIKLLAHVNSPREILAVTFTNKAAA 60 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM +R+ + + ++ I + + IT+ E + TI Sbjct: 61 EMKNRITNYLQNKTTPKNDTTKKLIDLLN---------KEIARRGITVDEIISEFNILTI 111 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 A + I+ PL +I ++ + E K + ++N + L Sbjct: 112 DALNQQIINSTPLLTQYGYQSSIIEDP--SPIHSEIIKKVI---YAESNSDHIHKMLHTL 166 Query: 197 EISNDEDIETLISDIISNRTALKLIFF 223 I +E + ++++NR F Sbjct: 167 NIEF-PQLEKYLLELMTNRDKWIHYIF 192 >gi|206890688|ref|YP_002249662.1| ATP-dependent DNA helicase PcrA [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742626|gb|ACI21683.1| ATP-dependent DNA helicase PcrA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 699 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 48/162 (29%), Gaps = 39/162 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 L ++Q V A AGSGKT ++ + L PS++ +T T A Sbjct: 6 LRDLNPAQQEAVVYCEGPLLVLAGAGSGKTRVITYKYAYLTKSKGLLPSSIFTVTFTNKA 65 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ + Sbjct: 66 ADEMKERIFKMCNG--------------------------------------NWKNTWIG 87 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ C I++ F I D++ LI+ K Sbjct: 88 TFHSLCVRILRAHIDNIGYKRDFIIYDDDDQAGLIKRILKDL 129 >gi|196228173|ref|ZP_03127040.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428] gi|196227576|gb|EDY22079.1| UvrD/REP helicase [Chthoniobacter flavus Ellin428] Length = 678 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 56/164 (34%), Gaps = 37/164 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L ++ + A AG+GKT ++ RV L+ PS +L +T T AA Sbjct: 6 LFDLNPEQEQAVRTTEGPLLILAGAGTGKTRVITMRVAFLISQGVDPSHILAVTFTNKAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ ++I + + T Sbjct: 66 DEMRERLAKMIEP-------------------------------------SQAKKVTMST 88 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 HA C I++Q + +F+I DE LI++ T A Sbjct: 89 FHALCVRILRQDIEKLGWKKNFSIYDEGDQMGLIKKIITRTAAK 132 >gi|78064806|ref|YP_367575.1| UvrD/REP helicase [Burkholderia sp. 383] gi|77965551|gb|ABB06931.1| UvrD/REP helicase [Burkholderia sp. 383] Length = 695 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ ++E + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133 >gi|161523326|ref|YP_001578338.1| UvrD/REP helicase [Burkholderia multivorans ATCC 17616] gi|160340755|gb|ABX13841.1| UvrD/REP helicase [Burkholderia multivorans ATCC 17616] Length = 721 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ ++E + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 30 GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 87 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 88 AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 122 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 123 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 159 >gi|206558483|ref|YP_002229243.1| ATP-dependent DNA helicase Rep [Burkholderia cenocepacia J2315] gi|198034520|emb|CAR50385.1| ATP-dependent DNA helicase Rep [Burkholderia cenocepacia J2315] Length = 695 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ ++E + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133 >gi|149184424|ref|ZP_01862742.1| DNA and RNA helicase [Erythrobacter sp. SD-21] gi|148831744|gb|EDL50177.1| DNA and RNA helicase [Erythrobacter sp. SD-21] Length = 196 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 61/186 (32%), Gaps = 42/186 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78 ++ + A AG+GKT L R+ L+ A PS +LC+T T AA EM Sbjct: 24 NAPQREAVLTTEGPVLMLAGAGTGKTAALTARLAHLIATRRAWPSEILCVTFTNKAAREM 83 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV I G + T H+ Sbjct: 84 RERVGRHIGDAVD-------------------------------------GMPWLGTFHS 106 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 ++++ + S++ I D + +L+++ + LD + +++ Sbjct: 107 IGARMLRRHAELVGLQSNYTIIDTDDQLRLLKQ----LIQENDLDEKRWPARQLAGLIDR 162 Query: 199 SNDEDI 204 + + Sbjct: 163 WKNRGL 168 >gi|299140726|ref|ZP_07033864.1| ATP-dependent DNA helicase PcrA [Prevotella oris C735] gi|298577692|gb|EFI49560.1| ATP-dependent DNA helicase PcrA [Prevotella oris C735] Length = 761 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 39/160 (24%) Query: 19 QTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAA 76 + Q A + V A AGSGKT +L ++ L+ P ++L LT T AA Sbjct: 4 ELNEGQRAAVEYCDGPQLVIAGAGSGKTRVLTYKIAYLIDEKQFEPWSILALTFTNKAAN 63 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ +++ + R+L + T Sbjct: 64 EMRSRIGKVVGQ--------------------------DRTRYLYM-----------GTF 86 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ I++ + T F I DE S+ L++ K Sbjct: 87 HSIFSRILRIEAEKLGYTKQFTIYDEADSRSLLKNIIKEM 126 >gi|170731518|ref|YP_001763465.1| UvrD/REP helicase [Burkholderia cenocepacia MC0-3] gi|169814760|gb|ACA89343.1| UvrD/REP helicase [Burkholderia cenocepacia MC0-3] Length = 695 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ ++E + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133 >gi|75676545|ref|YP_318966.1| UvrD/REP helicase [Nitrobacter winogradskyi Nb-255] gi|74421415|gb|ABA05614.1| ATP-dependent DNA helicase, Rep family [Nitrobacter winogradskyi Nb-255] Length = 816 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 67/191 (35%), Gaps = 43/191 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 +S EQ A + V A AG+GKT +L R+ +L A +L +T T Sbjct: 34 YLSGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSQGRARSGEILSVTFTNK 93 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM HR+ +++ G + Sbjct: 94 AAREMKHRLGQMLGQAVE-------------------------------------GMPWL 116 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ I++ + S+F I D + +L+++ L + +D+ + Sbjct: 117 GTFHSIAGRILRVHAELVQLKSNFTILDVDDQIRLLKQ----LLQADNIDDKRWPARMLA 172 Query: 194 EILEISNDEDI 204 +++ + + Sbjct: 173 GLIDGWKNRGL 183 >gi|159186244|ref|NP_356043.2| ATP-dependent DNA helicase [Agrobacterium tumefaciens str. C58] gi|159141378|gb|AAK88828.2| ATP-dependent DNA helicase [Agrobacterium tumefaciens str. C58] Length = 688 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 59/170 (34%), Gaps = 38/170 (22%) Query: 16 LISQTKSEQLLASD---------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66 + + +Q A + + A AGSGKT+ L RV L++ A P +L Sbjct: 5 YLDKLNEQQRKAVEHGVGLADGETAGPLLIIAGAGSGKTNTLAHRVAHLIVNGADPRRIL 64 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T ++ AA+EMS RV I + I++ + Sbjct: 65 LMTFSRRAASEMSRRVERICKQVIGANSAIMTDAL------------------------- 99 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++ + + + F I D E S L+ + Sbjct: 100 ----AWSGTFHGIGARLLRIYAEQIGLNIDFTIHDREDSADLMNLVRHEL 145 >gi|302340417|ref|YP_003805623.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293] gi|301637602|gb|ADK83029.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293] Length = 1137 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 40/198 (20%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 +Q A+ SA VSA AGSGKT IL +R + L+ A +L LT T+ AAAEM Sbjct: 5 LDPQQQEAAFTHHSAVVSAGAGSGKTTILSRRFVYLVETGRASVDEILTLTFTRKAAAEM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + R+ + + + T+ + Sbjct: 65 YERIYREL-------------------------------RNAVPDAAKAYDQATISTLDS 93 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC I++ I S F + D+++++ + A TL A + +++ Sbjct: 94 FCARIVRDRSDRFGIPSDF-VQDDQKAEDIARAAALETLLR------HRGSDALEQYIDL 146 Query: 199 SNDED-IETLISDIISNR 215 E +E L + + Sbjct: 147 FGFEGVLEGLFVALATRY 164 >gi|302875356|ref|YP_003843989.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans 743B] gi|307688937|ref|ZP_07631383.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans 743B] gi|302578213|gb|ADL52225.1| DNA polymerase III, epsilon subunit [Clostridium cellulovorans 743B] Length = 867 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 80/197 (40%), Gaps = 40/197 (20%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 + K +QLL ++ + + A+AG+GKT L +R+ R++ + P +LC+T T A Sbjct: 5 MKLNKEQQLLINEDENNILLLASAGTGKTDTLSKRIARIIESGKGKPEEILCITFTNKAC 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ ++I S + ++T Sbjct: 65 REMKERIEKVIGDSSR--------------------------------------NITIRT 86 Query: 136 IHAFCEAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 H+FC I++ + + +I + F I DEE K++I+ + + + K Sbjct: 87 FHSFCFDILKVEAKKKTDIFTDFIIFDEEDCKEMIKVCAPPGFSIAPMQRFIDSVKNIRV 146 Query: 195 ILEISNDEDIETLISDI 211 +I +D +E + I Sbjct: 147 KYDIYSDNSLEDYKNAI 163 >gi|148985058|ref|ZP_01818301.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP3-BS71] gi|147922756|gb|EDK73873.1| ATP-dependent DNA helicase PcrA [Streptococcus pneumoniae SP3-BS71] Length = 131 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 42/168 (25%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + ++ ++ ++E + ++ + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNALLNGMNDRQAEAVQTTE--GPLLIMAGAGSGKTRVLTHRIAYLIDEKLVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R + A Sbjct: 59 TFTNKAAREMKERAYSLNPATQDCL----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ +F I D + + L++ K Sbjct: 84 ----IATFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLMKRILKQL 127 >gi|325105548|ref|YP_004275202.1| UvrD/REP helicase [Pedobacter saltans DSM 12145] gi|324974396|gb|ADY53380.1| UvrD/REP helicase [Pedobacter saltans DSM 12145] Length = 1072 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 46/209 (22%), Positives = 83/209 (39%), Gaps = 11/209 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AGSGKT L L LL +N +L +T T A EM R+LE++ + + + Sbjct: 8 LQASAGSGKTFSLAVHYLTLLFSNESKYREILAVTFTNKATEEMKSRILEVLKSLAENNG 67 Query: 95 EILSAEITKIQGKK----PNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + K+ + + KA + IL V TI F + +++ F E Sbjct: 68 DTGIESYRKLILEAYPAFTREKLSEKADKIYRRILHDYSRFSVNTIDGFVQKVIRGFAFE 127 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL-EISNDEDIETLIS 209 + + +++ E K+ E + + D EL + + E D S Sbjct: 128 LGLDASYSL--EMNIDKVKENLVERLDKEL--DRQPELVQWVIRLAKERIEDNKSWNYKS 183 Query: 210 DIISNR-TALKLIFFFFSYLWRRKIIEKS 237 +++S K F F ++ +E + Sbjct: 184 ELLSLTGEIFKERFAVFEQALQQIGLENA 212 >gi|53720964|ref|YP_109950.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei K96243] gi|126441529|ref|YP_001060912.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 668] gi|126451499|ref|YP_001068210.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106a] gi|134281638|ref|ZP_01768346.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 305] gi|217424087|ref|ZP_03455587.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 576] gi|226193195|ref|ZP_03788805.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pakistan 9] gi|242314228|ref|ZP_04813244.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106b] gi|254183976|ref|ZP_04890567.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1655] gi|254186442|ref|ZP_04892959.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pasteur 52237] gi|254261078|ref|ZP_04952132.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710a] gi|52211378|emb|CAH37368.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei K96243] gi|126221022|gb|ABN84528.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 668] gi|126225141|gb|ABN88681.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106a] gi|134247305|gb|EBA47391.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 305] gi|157934127|gb|EDO89797.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pasteur 52237] gi|184214508|gb|EDU11551.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1655] gi|217393150|gb|EEC33172.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 576] gi|225934795|gb|EEH30772.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei Pakistan 9] gi|242137467|gb|EES23869.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1106b] gi|254219767|gb|EET09151.1| ATP-dependent DNA helicase Rep [Burkholderia pseudomallei 1710a] Length = 695 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ +SE + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNSAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133 >gi|311748551|ref|ZP_07722336.1| ATP-dependent DNA helicase PcrA [Algoriphagus sp. PR1] gi|126577070|gb|EAZ81318.1| ATP-dependent DNA helicase PcrA [Algoriphagus sp. PR1] Length = 752 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 41/165 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLT 69 + ++ ++ + E + +D + A AGSGKT +L R+ L+ +L LT Sbjct: 1 MDYLESLNPPQREAVEHTD--GPVMIIAGAGSGKTRVLTYRIAHLIYAKGVDAFNILSLT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA+EM HR+ + + + Sbjct: 59 FTNKAASEMKHRIESLAGLEARNT------------------------------------ 82 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + T H+ I++ + S+F I D + SK LI K Sbjct: 83 --WMGTFHSVFAKILRVESEKIGYPSNFTIYDADDSKSLIRSIVK 125 >gi|187736051|ref|YP_001878163.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835] gi|187426103|gb|ACD05382.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835] Length = 1054 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 71/186 (38%), Gaps = 22/186 (11%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHTKAAAAEMSHRVL---- 83 P + +SA+AG+GKT+ L R L LL + HP L+ +T T+ AA E R+L Sbjct: 3 PLTNMLISASAGTGKTYQLSLRFLGLLALNSGNHPERLIAITFTRKAAGEFKDRILTDLA 62 Query: 84 -------------EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 E + A +D + K + HLL +++ Sbjct: 63 AGATDEAGAARLKERLWAVIKGTDGEPGLWPGAPEAWKEENLHRERFLHLLHILVQNLAR 122 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS--IMLDNNEEL 188 L + TI + I E ++ F++ D K EA S + + ++ Sbjct: 123 LNLCTIDSLFAQIASASTFELGVS-GFSMIDPTAEKLARREALLSLYRECSVNKERRKDF 181 Query: 189 KKAFYE 194 + AF Sbjct: 182 EDAFLS 187 >gi|107024447|ref|YP_622774.1| UvrD/REP helicase [Burkholderia cenocepacia AU 1054] gi|116688174|ref|YP_833797.1| UvrD/REP helicase [Burkholderia cenocepacia HI2424] gi|105894636|gb|ABF77801.1| UvrD/REP helicase [Burkholderia cenocepacia AU 1054] gi|116646263|gb|ABK06904.1| UvrD/REP helicase [Burkholderia cenocepacia HI2424] Length = 695 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ ++E + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133 >gi|313665602|ref|YP_004047473.1| ATP-dependent DNA helicase PcrA [Mycoplasma leachii PG50] gi|312949842|gb|ADR24438.1| putative ATP-dependent DNA helicase PcrA [Mycoplasma leachii PG50] Length = 722 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 87/225 (38%), Gaps = 47/225 (20%) Query: 22 SEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMS 79 ++QL A + + + A AGSGKT ++ ++ L+ N PS +L +T T AA EM Sbjct: 12 TQQLAAVLNTDKPVRIIAGAGSGKTRVITTKIAYLIEKQNIDPSRILAVTFTNKAAKEMK 71 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RVL+I + + T H++ Sbjct: 72 ERVLQITN--------------------------------------NSFKSPFISTFHSW 93 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C +++ + F I D + K++I+ A L ++ NE KK F + + Sbjct: 94 CSKVLRIDGKHIGLEDKFLIIDSDDQKRIIKSA----LKESNIELNENDKKTFDKKILYK 149 Query: 200 NDEDIETLIS---DIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 E E L+ I++ + L+ F L++ +++ + Sbjct: 150 IKEWKEELVDPSEAILNATSTLEKNFAAIYRLYQNTLLKNNSLDF 194 >gi|254293049|ref|YP_003059072.1| UvrD/REP helicase [Hirschia baltica ATCC 49814] gi|254041580|gb|ACT58375.1| UvrD/REP helicase [Hirschia baltica ATCC 49814] Length = 1134 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 67/183 (36%), Gaps = 39/183 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 + + AS + + A G+GKT LV RV LL P +L LT + AA EM+ R+ Sbjct: 201 QAVAASHRGNAYLLEAGPGTGKTQTLVARVDALLEEGVDPRRILLLTFSNKAAGEMADRI 260 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 ++ + + + T HAF Sbjct: 261 ARKHSSAAT--------------------------------------AMWIGTFHAFGLD 282 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 I+++F E + + + D ++ +L+EE L N + + +IL+ + Sbjct: 283 IVRRFHGELGLPTDPRMMDRIEAVELLEEEFPR-LDLAHYRNLYDPTQIISDILQAISRA 341 Query: 203 DIE 205 E Sbjct: 342 KDE 344 >gi|332184910|ref|ZP_08386659.1| uvrD/REP helicase family protein [Sphingomonas sp. S17] gi|332014634|gb|EGI56690.1| uvrD/REP helicase family protein [Sphingomonas sp. S17] Length = 765 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 42/190 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L + +++ V A AG+GKT L R+ LL A PS +L +T T A Sbjct: 18 LRTLNPAQREAVLTTDGPVLVLAGAGTGKTAALTARLAHLLYTRKAWPSEILSVTFTNKA 77 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ G + Sbjct: 78 AREMRERVGRLVGDAVE-------------------------------------GMPWLG 100 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HA ++++ + S+F I D + +L+++ + + +D +A Sbjct: 101 TFHAIGAKMLRRHAELVGLQSNFTILDTDDQLRLLKQ----LIVAADIDEKRFPARALGG 156 Query: 195 ILEISNDEDI 204 +++ ++ + Sbjct: 157 LIDEWKNKGL 166 >gi|256384179|gb|ACU78749.1| UvrD/REP helicase domain protein [Mycoplasma mycoides subsp. capri str. GM12] gi|256385011|gb|ACU79580.1| UvrD/REP helicase domain protein [Mycoplasma mycoides subsp. capri str. GM12] gi|296456014|gb|ADH22249.1| UvrD/REP helicase domain protein [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 722 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 45/229 (19%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 +DL++ + + + + A AGSGKT ++ ++ L+ + P+ +L +T Sbjct: 5 HLLDLLN--PQQLAAVINTDKPVRIIAGAGSGKTRVITTKIAYLIEKKHIDPTRILAVTF 62 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RVL+ ITK Q K P Sbjct: 63 TNKAAKEMKERVLQ----------------ITKNQKKSP--------------------- 85 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + T HA+C +++ + F I D + K++I+ A K + + ++ + K Sbjct: 86 -FISTFHAWCSKVLRIDGKHVGLKDKFLIIDSDDQKRIIKNALKESNIELSENDKKTFDK 144 Query: 191 AFYEILEISNDE--DIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 ++ +E D + I + S +R + + + L + I+ Sbjct: 145 KILYKIKEWKEELVDPDEAILNANSTYDRNSAIIYKLYQETLLKNNSID 193 >gi|124010006|ref|ZP_01694669.1| ATP-dependent DNA helicase PcrA [Microscilla marina ATCC 23134] gi|123983964|gb|EAY24352.1| ATP-dependent DNA helicase PcrA [Microscilla marina ATCC 23134] Length = 743 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 + I ++ + E +L D + A AGSGKT +L R+ L+ +L LT T Sbjct: 3 DYIKGLNDPQREAVLHKD--GPIMIIAGAGSGKTRVLTNRIAHLIGTGVPAYNILALTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +II + + Sbjct: 61 NKAAGEMRLRIEKIIGDKAK--------------------------------------DI 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + T H+ I++ + TS F+I D + SK LI K Sbjct: 83 WMGTFHSVFAKILRFEADKIGYTSSFSIYDTDDSKSLIRSIVKE 126 >gi|331703738|ref|YP_004400425.1| ATP dependent DNA helicase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802293|emb|CBW54447.1| ATP dependent DNA helicase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 722 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 45/229 (19%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 +DL++ + + + + A AGSGKT ++ ++ L+ + P+ +L +T Sbjct: 5 HLLDLLN--PQQLAAVINTDKPVRIIAGAGSGKTRVITTKIAYLIEKKHIDPTRILAVTF 62 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RVL+ ITK Q K P Sbjct: 63 TNKAAKEMKERVLQ----------------ITKNQKKSP--------------------- 85 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + T HA+C +++ + F I D + K++I+ A K + + ++ + K Sbjct: 86 -FISTFHAWCSKVLRIDGKHVGLKDKFLIIDSDDQKRIIKNALKESNIELSENDKKTFDK 144 Query: 191 AFYEILEISNDE--DIETLISDIIS--NRTALKLIFFFFSYLWRRKIIE 235 ++ +E D + I + S +R + + + L + I+ Sbjct: 145 KILYKIKEWKEELVDPDEAILNANSTYDRNSAIIYKLYQETLLKNNSID 193 >gi|189351901|ref|YP_001947529.1| ATP-dependent DNA helicase [Burkholderia multivorans ATCC 17616] gi|189335923|dbj|BAG44993.1| ATP-dependent DNA helicase [Burkholderia multivorans ATCC 17616] Length = 695 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ ++E + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133 >gi|218780688|ref|YP_002432006.1| exodeoxyribonuclease V, beta subunit [Desulfatibacillum alkenivorans AK-01] gi|218762072|gb|ACL04538.1| exodeoxyribonuclease V, beta subunit [Desulfatibacillum alkenivorans AK-01] Length = 1167 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 5/153 (3%) Query: 35 WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT+ L +RLL+ +L +T T AA E+ R+ + Sbjct: 17 LIEASAGTGKTYTLTSLYIRLLIEKGLLVDQILVVTFTVAATQELKDRIRNRLKIARDAF 76 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 D + K + + S+ R + + V TIH FC+ ++ + E+ Sbjct: 77 DGKEVDDDLVQAVVKEHNNPQSRLR--VEDAIRRFDEAAVFTIHGFCQRVLGENAFESGA 134 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + +A ++ + E + + E Sbjct: 135 SFDAELA--TDNQDFLMEIARDFWRREFYEAPE 165 >gi|324007528|gb|EGB76747.1| DNA helicase II [Escherichia coli MS 57-2] Length = 696 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 43/163 (26%) Query: 44 KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102 KT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 11 KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 56 Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162 + GG+ V T H +++ ++AN+ F I D Sbjct: 57 ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 92 Query: 163 EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 E +L+ K + ++ LD + + + DE + Sbjct: 93 EDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLR 131 >gi|300900636|ref|ZP_07118795.1| DNA helicase II [Escherichia coli MS 198-1] gi|300355867|gb|EFJ71737.1| DNA helicase II [Escherichia coli MS 198-1] Length = 695 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 43/163 (26%) Query: 44 KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102 KT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 10 KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 55 Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162 + GG+ V T H +++ ++AN+ F I D Sbjct: 56 ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 91 Query: 163 EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 E +L+ K + ++ LD + + + DE + Sbjct: 92 EDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLR 130 >gi|167587899|ref|ZP_02380287.1| UvrD/REP helicase [Burkholderia ubonensis Bu] Length = 696 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ ++E + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVSKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +I+E Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQE 133 >gi|315293210|gb|EFU52562.1| DNA helicase II [Escherichia coli MS 153-1] Length = 699 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 43/163 (26%) Query: 44 KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102 KT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 14 KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 59 Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162 + GG+ V T H +++ ++AN+ F I D Sbjct: 60 ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 95 Query: 163 EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 E +L+ K + ++ LD + + + DE + Sbjct: 96 EDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLR 134 >gi|300939966|ref|ZP_07154595.1| DNA helicase II [Escherichia coli MS 21-1] gi|300455228|gb|EFK18721.1| DNA helicase II [Escherichia coli MS 21-1] gi|315284765|gb|EFU44210.1| DNA helicase II [Escherichia coli MS 110-3] Length = 695 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 43/163 (26%) Query: 44 KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102 KT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 10 KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 55 Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162 + GG+ V T H +++ ++AN+ F I D Sbjct: 56 ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 91 Query: 163 EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 E +L+ K + ++ LD + + + DE + Sbjct: 92 EDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLR 130 >gi|300985670|ref|ZP_07177557.1| DNA helicase II [Escherichia coli MS 45-1] gi|300408054|gb|EFJ91592.1| DNA helicase II [Escherichia coli MS 45-1] Length = 699 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 43/163 (26%) Query: 44 KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102 KT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 14 KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 59 Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162 + GG+ V T H +++ ++AN+ F I D Sbjct: 60 ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 95 Query: 163 EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 E +L+ K + ++ LD + + + DE + Sbjct: 96 EDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLR 134 >gi|300979415|ref|ZP_07174544.1| DNA helicase II [Escherichia coli MS 200-1] gi|300308006|gb|EFJ62526.1| DNA helicase II [Escherichia coli MS 200-1] Length = 698 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 43/163 (26%) Query: 44 KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102 KT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 13 KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 58 Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162 + GG+ V T H +++ ++AN+ F I D Sbjct: 59 ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 94 Query: 163 EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 E +L+ K + ++ LD + + + DE + Sbjct: 95 EDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLR 133 >gi|313157484|gb|EFR56903.1| UvrD/REP helicase [Alistipes sp. HGB5] Length = 1047 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 76/173 (43%), Gaps = 6/173 (3%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWS 90 R+ ++A+AGSGKT+ L + +R ++ +L +T T A EM R+L+ I + Sbjct: 2 RAKILNASAGSGKTYQLAYKYVRDVVEQPSIYRHILAVTFTNKATEEMKSRILKEIHLLA 61 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + + + + +A + IL V TI F + I++ F E Sbjct: 62 SGGESSYLENLCRELDMD-AATVRRRAAEVRSKILHDYSRFTVLTIDTFFQRILRAFIKE 120 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 I ++ + E ++ ++ ++ + + I D + L++ + ++ DE Sbjct: 121 LGIDLNYNV--EIETASVLTKSADTLIEQITTDRD--LQRWLTDFVQERIDEG 169 >gi|260424687|ref|ZP_05732964.2| ATP-dependent DNA helicase PcrA [Dialister invisus DSM 15470] gi|260402848|gb|EEW96395.1| ATP-dependent DNA helicase PcrA [Dialister invisus DSM 15470] Length = 746 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 64/178 (35%), Gaps = 51/178 (28%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D +++ ++ + A AGSGKT L R+ +L P +L +T T Sbjct: 13 YLDTLNE--RQRQAVEQIEGPVLIMAGAGSGKTKALTCRIAYMLEQGIRPQNILAITFTN 70 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ A + L Sbjct: 71 KAAQEMRERVHHLVGAEA--------------------------------------DKLW 92 Query: 133 VQTIHAFCEAIMQQ----FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + T H+F +++ P + F I D + SK++I K+ L + LD+ + Sbjct: 93 MYTFHSFGARFLRREINNHPPFTD---KFTIYDSDDSKQMI----KNILKELNLDDKQ 143 >gi|304440181|ref|ZP_07400071.1| ATP-dependent nuclease subunit A [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371230|gb|EFM24846.1| ATP-dependent nuclease subunit A [Peptoniphilus duerdenii ATCC BAA-1640] Length = 1076 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 90/215 (41%), Gaps = 30/215 (13%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTK 72 I+ I + L+ D ++ V A AG+GKT +LV R++ L++ N P ++ +T T Sbjct: 7 INEIENNNRDNLITGD--KNFLVEAGAGAGKTFLLVNRLIDLIINKNIKPKEIVAITFTV 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA ++ R+ + + ++ + ILE ++ Sbjct: 65 KAATDLKKRIYDEFAKRAKTDNK-------------------------IKNILEFIPEIQ 99 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TIH+FC +I+ + P +A ++ ++ + ++ + + + + + + ++ F Sbjct: 100 IGTIHSFCNSIISRRPFDAGLSMNYRLLEDSEYDRYLSKMYEEFEENSYKYVDKYTADIF 159 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 + S IE ++ +I F ++ Sbjct: 160 LHLNHRS--RIIENFSKFAMNESVDFPVIEGFENF 192 >gi|254796732|ref|YP_003081568.1| DNA helicase II, UvrD/Rep family, C-terminal fragment [Neorickettsia risticii str. Illinois] gi|254590533|gb|ACT69895.1| DNA helicase II, UvrD/Rep family, C-terminal fragment [Neorickettsia risticii str. Illinois] Length = 161 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 40/160 (25%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 ++ ++L + A AG+GKT LV R+ L+ + AHP+ ++ +T AA Sbjct: 35 MNLNDEQRLAVETVNGPVLILAGAGTGKTKTLVHRIAHLIKSGYAHPNQIMAVTFANKAA 94 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV EI+ + T Sbjct: 95 NEMIQRVNEIVGEMKFH---------------------------------------WIGT 115 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 HA I++ + F I D + +++++ + Sbjct: 116 FHAAAAKILRIEADKLGFKPDFTILDVDDQVRMLQKVAQE 155 >gi|301328420|ref|ZP_07221506.1| DNA helicase II [Escherichia coli MS 78-1] gi|300845170|gb|EFK72930.1| DNA helicase II [Escherichia coli MS 78-1] Length = 700 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 63/163 (38%), Gaps = 43/163 (26%) Query: 44 KTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102 KT +LV R+ L+ + N P +++ +T T AAAEM HR+ +++ Sbjct: 15 KTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT-------------- 60 Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162 + GG+ V T H +++ ++AN+ F I D Sbjct: 61 ------------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDS 96 Query: 163 EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 E +L+ K + ++ LD + + + DE + Sbjct: 97 EDQLRLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLR 135 >gi|152984144|ref|YP_001350187.1| exodeoxyribonuclease V beta chain [Pseudomonas aeruginosa PA7] gi|150959302|gb|ABR81327.1| exodeoxyribonuclease V, beta subunit [Pseudomonas aeruginosa PA7] Length = 1244 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 79/198 (39%), Gaps = 17/198 (8%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT + +RL+L + P +L +T T AA E+ R+ Sbjct: 18 GSRLIEASAGTGKTFTIALLYVRLVLDHGGENAFGRPLSPPEILVVTFTDAATRELRERI 77 Query: 83 LEIITAWSHLSDEILSAE---ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 +T + E ++ + ++ + P + AR LL E V TIH++ Sbjct: 78 RSRLTEAARCFAEPQASHDGLLVALRQQYPAERWPGCAR-LLRLAAEWMDEAAVSTIHSW 136 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C ++++ ++ S F E +L+ E + + +A S Sbjct: 137 CYRMLREHAFDSG--SLFTQNLETDQSELLAEVVRDYWRRNFYGLTAQAAQAVASC--YS 192 Query: 200 NDEDIETLISDIISNRTA 217 E + + +++ + A Sbjct: 193 GPEALGKALQPLLARQDA 210 >gi|325288901|ref|YP_004265082.1| ATP-dependent DNA helicase PcrA [Syntrophobotulus glycolicus DSM 8271] gi|324964302|gb|ADY55081.1| ATP-dependent DNA helicase PcrA [Syntrophobotulus glycolicus DSM 8271] Length = 745 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 55/167 (32%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 +++ ++ + E D + A AGSGKT L R+ L+ + +L +T Sbjct: 1 MYSLEDLNPVQREAAEYLD--GPLLILAGAGSGKTKALTYRIAHLIAKGVNSWNILAITF 58 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RVL ++ + G Sbjct: 59 TNKAAREMRERVLALVGSEGE--------------------------------------G 80 Query: 131 LKVQTIHAFCEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKST 176 L + T H+ C I+++ + F I D L+ K Sbjct: 81 LWISTFHSACVKILRREIAHLEGYSRSFVIYDASDQLSLLRSCYKEL 127 >gi|262038007|ref|ZP_06011419.1| ATP-dependent DNA helicase PcrA [Leptotrichia goodfellowii F0264] gi|261747960|gb|EEY35387.1| ATP-dependent DNA helicase PcrA [Leptotrichia goodfellowii F0264] Length = 733 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 59/165 (35%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + ++ + SEQ A++ + A AGSGKT + R+ ++ P +L LT T Sbjct: 1 MSILDELNSEQKKAAEKTEGPILILAGAGSGKTRTVTYRIAHMIKEIGISPMNILALTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R +I A S L Sbjct: 61 NKAAREMKERAEALIGADS--------------------------------------YNL 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+F +++ + +F I D + K +I + KK Sbjct: 83 VVSTFHSFSVKLLKTYADRIGFGRNFNIYDVDDQKSIITKIKKDL 127 >gi|298505648|gb|ADI84371.1| exodeoxyribonuclease V, beta subunit [Geobacter sulfurreducens KN400] Length = 1204 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 7/183 (3%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII-TAWSH 91 V A+AG+GKT + LRL++ P +L +T T+AA E+ R+ + + A Sbjct: 19 LVEASAGTGKTFAIACLYLRLVVEGEGLLPDNILVVTFTEAATKELRARIRQRLRQARDR 78 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 + E + A + + L+T + TIH FC +Q+ E+ Sbjct: 79 FAGGGAPDEFLDRLALGERWPGHATALARIDSALQTFDCAAISTIHGFCLRALQENAFES 138 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 S F + L+ + + L + + E++ + +I Sbjct: 139 G--SLFDTELAADQEPLLRQVADDFWRHHFFGADAPLLPL--ALGRRWSPEELAAFLRNI 194 Query: 212 ISN 214 Sbjct: 195 AGK 197 >gi|282890111|ref|ZP_06298642.1| hypothetical protein pah_c013o010 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499962|gb|EFB42250.1| hypothetical protein pah_c013o010 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 721 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 71/191 (37%), Gaps = 52/191 (27%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ QR+ L+ PS +L +T T AA Sbjct: 1 MKNLNDQQVRAIQALEGPFLVLAGAGSGKTRVVTQRIAHLIDEGIPPSQILAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +EM +RV E+ T + + T Sbjct: 61 SEMQNRVKEL-----------------------------------------TFHSVLIST 79 Query: 136 IHAFCEAIMQQ----FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 H+ I+++ FP + +F I DEE K+I K+ + + + + + KA Sbjct: 80 FHSLGARILRESIHAFPHYSR---NFVIYDEEDVLKVI----KNCMEELHISDKKLEPKA 132 Query: 192 FYEILEISNDE 202 F ++ + + Sbjct: 133 FKHLISQAKNA 143 >gi|296158274|ref|ZP_06841106.1| UvrD/REP helicase [Burkholderia sp. Ch1-1] gi|295891610|gb|EFG71396.1| UvrD/REP helicase [Burkholderia sp. Ch1-1] Length = 708 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 60/173 (34%), Gaps = 38/173 (21%) Query: 12 ETIDLISQTKSEQLLASD--------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63 +T +++ Q A + P + V A AGSGKT+ L RV L++ A P Sbjct: 11 DTAAWLARLNDAQREAVEYGADTPTAPPGALLVIAGAGSGKTNTLAHRVANLVVNGADPR 70 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L LT ++ AA EM RV I A L Sbjct: 71 RILLLTFSRRAALEMIRRVTRIAGA------------------------------ALGTR 100 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G T H+ +++++ + F I D E S L+ + Sbjct: 101 AALAQGLTWSGTFHSVGARLLREYADLIGLAPAFTINDREDSADLMNLVRHEL 153 >gi|28897857|ref|NP_797462.1| putative ATP-dependent DNA helicase [Vibrio parahaemolyticus RIMD 2210633] gi|153838039|ref|ZP_01990706.1| UvrD/REP helicase [Vibrio parahaemolyticus AQ3810] gi|260877018|ref|ZP_05889373.1| UvrD/REP helicase [Vibrio parahaemolyticus AN-5034] gi|260899090|ref|ZP_05907531.1| UvrD/REP helicase [Vibrio parahaemolyticus Peru-466] gi|28806070|dbj|BAC59346.1| putative ATP-dependent DNA helicase [Vibrio parahaemolyticus RIMD 2210633] gi|149748573|gb|EDM59432.1| UvrD/REP helicase [Vibrio parahaemolyticus AQ3810] gi|308089138|gb|EFO38833.1| UvrD/REP helicase [Vibrio parahaemolyticus Peru-466] gi|308093677|gb|EFO43372.1| UvrD/REP helicase [Vibrio parahaemolyticus AN-5034] Length = 1139 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 68/201 (33%), Gaps = 44/201 (21%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 + ++ A + + A G+GKT LV+RV LL P +L LT + AA EM+ Sbjct: 198 NEQQKHAADHRGKPYLLEAGPGTGKTQTLVKRVEGLLDEGVDPRRILILTFSNKAAGEMA 257 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ E + + T HAF Sbjct: 258 ERLASKNK--------------------------------------EAVASMWIGTFHAF 279 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 ++++F E + + ++ EA + + L++ L I + Sbjct: 280 GLDLVRRFYSELGFEKEPRLLERTEAV----EALEDEFPRLGLEHFRNLYDPTEHITNLL 335 Query: 200 NDEDIETLISDIISNRTALKL 220 + I +++ +R +L Sbjct: 336 S--AISRAKDEVVDHRDYFRL 354 >gi|170726988|ref|YP_001761014.1| exodeoxyribonuclease V subunit beta [Shewanella woodyi ATCC 51908] gi|169812335|gb|ACA86919.1| exodeoxyribonuclease V, beta subunit [Shewanella woodyi ATCC 51908] Length = 1229 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 12/157 (7%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEI 85 S + A+AG+GKT + +RLLL + P +L +T T AA E+ R+ Sbjct: 23 GGSRLIEASAGTGKTFTIAGLYVRLLLGHEIPTPLTCEQILVVTFTNAATGELRDRIRRK 82 Query: 86 IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I A+ E+ + + +S+ A L L++ + TIH FC+ I+ Sbjct: 83 IQLAYRCFIGLDTGDELIESLYRLTPESERPLALKRLDLALKSLDEASIFTIHGFCQRIL 142 Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLAS 179 E+++ S F + D E + A + Sbjct: 143 ADMAFESSLLFESEFTLDDSE----FLHHAVRDFWRE 175 >gi|84516406|ref|ZP_01003765.1| putative uvrD/DNA Helicase II [Loktanella vestfoldensis SKA53] gi|84509442|gb|EAQ05900.1| putative uvrD/DNA Helicase II [Loktanella vestfoldensis SKA53] Length = 797 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 40/165 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68 +D ++ + + + D + A AG+GKT L R+ +L +A P +L + Sbjct: 26 AMPYLDGLNPAQRQAVETLD--GPVLMLAGAGTGKTKALTSRIAHVLATRSARPQEVLAV 83 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM HR+ ++ Sbjct: 84 TFTNKAAREMKHRIAALMGEAVEGLP---------------------------------- 109 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + T H+ ++++ + S F I D + +L+++ Sbjct: 110 ---WLGTFHSVSAKLLRRHAELVGLQSSFTILDTDDQLRLLKQLV 151 >gi|190346242|gb|EDK38280.2| hypothetical protein PGUG_02378 [Meyerozyma guilliermondii ATCC 6260] Length = 830 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 38/177 (21%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70 E + +++ + + A +R V A G+GKT +LV RV LLL P ++ T Sbjct: 7 ELLSSLNENQRTAVTAPLNSR-ICVIAGPGTGKTKVLVSRVAHLLLHDQIPPQQIIVTTF 65 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 TK AA EM R+ ++ Sbjct: 66 TKKAANEMVSRLRLVLQDTDI-----------------------------------DVNR 90 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 L V T H+ C I++++ + F IADE+ S L+EE + + +++E+ Sbjct: 91 LMVGTFHSICYRIIKKYGHLIGLE-GFTIADEKDSIHLLEECLEKIGKNPQQNDDEK 146 >gi|76798891|ref|ZP_00781098.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 18RS21] gi|76585760|gb|EAO62311.1| ATP-dependent DNA helicase PcrA [Streptococcus agalactiae 18RS21] Length = 644 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 57/168 (33%), Gaps = 42/168 (25%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + I ++ ++E + +D + A AGSGKT +L R+ L+ +P +L + Sbjct: 1 MNPLIIGMNDKQAEAVQTTD--GPLLIMAGAGSGKTRVLTHRIAYLIDEKYVNPWNILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R P D Sbjct: 59 TFTNKAAREMRER----------------------AIALNPATQDTL------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ +F I D + + L++ K Sbjct: 84 ----IATFHSMCVRILRREADYIGYNRNFTIVDPGEQRTLMKRIIKQL 127 >gi|241761119|ref|ZP_04759208.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374738|gb|EER64199.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 768 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 43/205 (20%) Query: 2 IYHNSFQEHSETIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-N 59 +Y + E D +++ EQ + + V A AG+GKT L R+ L+ Sbjct: 5 LYSSFSAETPPEPDYLARLNPEQKEVVRTTEGALLVLAGAGTGKTAALTARLAYLVETLK 64 Query: 60 AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119 A PS +L +T T AA EM RV +++ + + Sbjct: 65 AWPSQILAVTFTNKAAREMQMRVGDLLGSQAENMP------------------------- 99 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 + T H+ ++++ + S F I D + +L+++ + Sbjct: 100 ------------WLGTFHSIAAKMLRRHAELVGLKSDFIILDTDDQIRLLKQ----LIQG 143 Query: 180 IMLDNNEELKKAFYEILEISNDEDI 204 +D + K I++ + + Sbjct: 144 QGIDEKQWPAKQLAGIIDRWKNRGL 168 >gi|56551470|ref|YP_162309.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ZM4] gi|56543044|gb|AAV89198.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis ZM4] Length = 768 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 43/205 (20%) Query: 2 IYHNSFQEHSETIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-N 59 +Y + E D +++ EQ + + V A AG+GKT L R+ L+ Sbjct: 5 LYSSFSAETPPEPDYLARLNPEQKEVVRTTEGALLVLAGAGTGKTAALTARLAYLVETLK 64 Query: 60 AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119 A PS +L +T T AA EM RV +++ + + Sbjct: 65 AWPSQILAVTFTNKAAREMQMRVGDLLGSQAENMP------------------------- 99 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 + T H+ ++++ + S F I D + +L+++ + Sbjct: 100 ------------WLGTFHSIAAKMLRRHAELVGLKSDFIILDTDDQIRLLKQ----LIQG 143 Query: 180 IMLDNNEELKKAFYEILEISNDEDI 204 +D + K I++ + + Sbjct: 144 QGIDEKQWPAKQLAGIIDRWKNRGL 168 >gi|94497982|ref|ZP_01304546.1| UvrD/REP helicase [Sphingomonas sp. SKA58] gi|94422565|gb|EAT07602.1| UvrD/REP helicase [Sphingomonas sp. SKA58] Length = 758 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 63/186 (33%), Gaps = 42/186 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78 ++ V A AG+GKT L R+ L+ A PS +L +T T AA EM Sbjct: 18 NTPQREAVLTTEGPVLVLAGAGTGKTAALTARLAHLVATRRAWPSEILAVTFTNKAAREM 77 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +I G + T HA Sbjct: 78 RARVGAMIGDAVE-------------------------------------GMPWLGTFHA 100 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 ++++ + S+F I D + +L+++ + + +D + +++ Sbjct: 101 IAARMLRRHAELVGLQSNFTILDTDDQLRLMKQ----LIQAEGIDEKRWPARQLGGLIDQ 156 Query: 199 SNDEDI 204 ++ + Sbjct: 157 WKNKGL 162 >gi|23428614|gb|AAM12391.1| helicase II [Zymomonas mobilis subsp. mobilis CP4] Length = 777 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 43/205 (20%) Query: 2 IYHNSFQEHSETIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-N 59 +Y + E D +++ EQ + + V A AG+GKT L R+ L+ Sbjct: 4 LYSSFSAETPPEPDYLARLNPEQKEVVRTTEGALLVLAGAGTGKTAALTARLAYLVETLK 63 Query: 60 AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119 A PS +L +T T AA EM RV ++ +++ Sbjct: 64 AWPSQILAVTFTNKAAREMQMRVGYLLGSFAENMP------------------------- 98 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 + T H+ ++++ + S F I D + +L+++ + Sbjct: 99 ------------WLGTFHSIAAKMLRRHAELVGLKSDFIILDTDDQIRLLKQ----LIQG 142 Query: 180 IMLDNNEELKKAFYEILEISNDEDI 204 +D + K I++ + + Sbjct: 143 QGIDEKQWPAKQLAGIIDRWKNRGL 167 >gi|39996634|ref|NP_952585.1| exodeoxyribonuclease V subunit beta [Geobacter sulfurreducens PCA] gi|39983515|gb|AAR34908.1| exodeoxyribonuclease V, beta subunit [Geobacter sulfurreducens PCA] Length = 1204 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 7/183 (3%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAAAEMSHRVLEII-TAWSH 91 V A+AG+GKT + LRL++ P +L +T T+AA E+ R+ + + A Sbjct: 19 LVEASAGTGKTFAIACLYLRLVVEGEGLLPDNILVVTFTEAATKELRARIRQRLRQARDR 78 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 + E + A + + L+T + TIH FC +Q+ E+ Sbjct: 79 FAGGGAPDEFLDRLALGERWPGHATALARIDSALQTFDCAAISTIHGFCLRALQENAFES 138 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 S F + L+ + + L + + E++ + +I Sbjct: 139 G--SLFDTELAADQEPLLRQVADDFWRHHFFGADAPLLPL--ALGRRWSPEELAAFLRNI 194 Query: 212 ISN 214 Sbjct: 195 AGK 197 >gi|182680607|ref|YP_001828767.1| DNA-dependent helicase II [Xylella fastidiosa M23] gi|182630717|gb|ACB91493.1| DNA helicase II [Xylella fastidiosa M23] Length = 723 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 62/165 (37%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHT 71 +D ++Q + E + A+ + A AGSGKT +L R++ L + +++ +T T Sbjct: 1 MLDHLNQNQREAVAAA--PGHYLILAGAGSGKTRVLTHRIVWLNEVNGVPTHSMMAVTFT 58 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA E+ R+ + + G+ Sbjct: 59 NKAAGEIQQRID--------------------------------------LQLRHGKRGM 80 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ +++ +A + +F + D + +L++ +S Sbjct: 81 WIGTFHSLAHRLLRLHWNDATLPENFQVIDSDDQLRLVKRVIQSL 125 >gi|149241203|ref|XP_001526284.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] gi|146450407|gb|EDK44663.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] Length = 939 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 40/181 (22%), Positives = 67/181 (37%), Gaps = 29/181 (16%) Query: 2 IYHNSFQEHSETIDLISQTKSEQLLASDPTRS--AWVSANAGSGKTHILVQRVLRLLL-A 58 + S E + + Q +A + + A G+GKT +L+ RV LLL Sbjct: 1 MSEGSTDSTPEIEMFLRGLNANQRIAVTSPANGRLQIIAGPGTGKTKVLISRVAYLLLHE 60 Query: 59 NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118 P ++ T TK AA EM R+ +++ + + I Sbjct: 61 RIKPEHIIVTTFTKKAANEMVDRLGKMLGNTGDGTGVVPGTSIE---------------- 104 Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 L + T H+ C I+++F + + F IADE LI+E + L+ Sbjct: 105 ---------LDKLLIGTFHSICFRIIKKFGHKVGL-GGFTIADERDKDILIKEMFEKNLS 154 Query: 179 S 179 Sbjct: 155 D 155 >gi|309778890|ref|ZP_07673660.1| ATP-dependent DNA helicase, UvrD/REP family [Ralstonia sp. 5_7_47FAA] gi|308922237|gb|EFP67864.1| ATP-dependent DNA helicase, UvrD/REP family [Ralstonia sp. 5_7_47FAA] Length = 716 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 29/177 (16%) Query: 9 EHSETIDLISQTKSEQLLASDP---------TRSAWVSANAGSGKTHILVQRVLRLLLAN 59 T ++Q +Q A + T V A AGSGKTH L RV L+ Sbjct: 12 NAPATPGYLAQLNDQQRQAVEFGISGADAAETGPLLVLAGAGSGKTHTLGWRVAHLVANG 71 Query: 60 AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119 A P +L LT ++ AA+E+S+R ++ +QG++ N + ++ A Sbjct: 72 ADPQRILLLTFSRRAASELSNRAGHLLAR--------------AMQGERSNNA-LNSAGT 116 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T L T H +++++ + F I D S L+ + Sbjct: 117 SYKTTLP-----WAGTFHGIGARLLREYAERVGLAPDFTIHDRSDSADLLNVVRHEL 168 >gi|295133070|ref|YP_003583746.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Zunongwangia profunda SM-A87] gi|294981085|gb|ADF51550.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Zunongwangia profunda SM-A87] Length = 773 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 55/162 (33%), Gaps = 38/162 (23%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 +++ Q + V A AGSGKT +L R+ ++ +L LT T A Sbjct: 4 YLAELNDAQRAPTLQIDGPMIVIAGAGSGKTRVLTYRIAYMMSKGIDAFNILALTFTNKA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM HR+ +I+ + L + Sbjct: 64 AREMQHRISQIVGRSEAKN-------------------------------------LWMG 86 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ + S+F I D + S+ +I K Sbjct: 87 TFHSVFAKILRFEADKLGYPSNFTIYDTQDSQSVIRAIIKDM 128 >gi|187926312|ref|YP_001892657.1| UvrD/REP helicase [Ralstonia pickettii 12J] gi|241665800|ref|YP_002984159.1| UvrD/REP helicase [Ralstonia pickettii 12D] gi|187728066|gb|ACD29230.1| UvrD/REP helicase [Ralstonia pickettii 12J] gi|240867827|gb|ACS65487.1| UvrD/REP helicase [Ralstonia pickettii 12D] Length = 716 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 29/177 (16%) Query: 9 EHSETIDLISQTKSEQLLASDP---------TRSAWVSANAGSGKTHILVQRVLRLLLAN 59 T ++Q +Q A + T V A AGSGKTH L RV L+ Sbjct: 12 NAPATPGYLAQLNDQQRQAVEFGISGADAAETGPLLVLAGAGSGKTHTLGWRVAHLVANG 71 Query: 60 AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119 A P +L LT ++ AA+E+S+R ++ +QG++ N + ++ A Sbjct: 72 ADPQRILLLTFSRRAASELSNRAGHLLAR--------------AMQGERSNNA-LNSAGT 116 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T L T H +++++ + F I D S L+ + Sbjct: 117 SYKTTLP-----WAGTFHGIGARLLREYAERVGLAPDFTIHDRSDSADLLNVVRHEL 168 >gi|298372853|ref|ZP_06982843.1| ATP-dependent DNA helicase PcrA [Bacteroidetes oral taxon 274 str. F0058] gi|298275757|gb|EFI17308.1| ATP-dependent DNA helicase PcrA [Bacteroidetes oral taxon 274 str. F0058] Length = 776 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 53/158 (33%), Gaps = 38/158 (24%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 QL A + + A AGSGKT +L ++ L+ S++L LT T AA EM Sbjct: 15 LNPAQLAAVTYCDGPSVIVAGAGSGKTRVLTYKIAYLIAQGFPASSILALTFTNKAANEM 74 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+++I+ L T H+ Sbjct: 75 KERIMQIVGEKYTR-------------------------------------YLWAGTFHS 97 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 I++Q F I D + SK L++ K Sbjct: 98 VFLRILRQEVDAIGFLPDFTIYDTQDSKSLVKSIVKDM 135 >gi|289208791|ref|YP_003460857.1| exodeoxyribonuclease V subunit beta [Thioalkalivibrio sp. K90mix] gi|288944422|gb|ADC72121.1| exodeoxyribonuclease V, beta subunit [Thioalkalivibrio sp. K90mix] Length = 1240 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 74/191 (38%), Gaps = 19/191 (9%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT+ + LRL+L + P +L +T T+AA E+ R+ Sbjct: 17 GSRLIEASAGTGKTYTIAALYLRLVLGHGELPEGTGELTPPQILVMTFTEAATRELRERI 76 Query: 83 LEIITAWSHL----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 ++ + + A + P + + A L E V TIH Sbjct: 77 RAVLARGARILRGEPAPAHEALWPALLDAYPEPAARAGAARRLELAAEWMDEAAVSTIHG 136 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 +C ++++ ++ + + E +L+ EA + + + +L Sbjct: 137 WCYRMLREHAFDSGSLFNQRL--EADQGELVAEAARDYWRRFVYPQPADH----LRLLRQ 190 Query: 199 SNDEDIETLIS 209 + E + L++ Sbjct: 191 AFGEGPDDLLA 201 >gi|42526415|ref|NP_971513.1| ATP-dependent DNA helicase PcrA [Treponema denticola ATCC 35405] gi|41816608|gb|AAS11394.1| ATP-dependent DNA helicase PcrA [Treponema denticola ATCC 35405] Length = 662 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 54/157 (34%), Gaps = 38/157 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 + + + A AGSGKT ++ R+ +L S +L LT T AA EM+ Sbjct: 9 NPEQFKAVTTINGPVLIIAGAGSGKTRVITFRIAHMLDKGIPQSQILALTFTNKAAKEMA 68 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV E+ L V T HAF Sbjct: 69 DRVKELTGK--------------------------------------KLQNLTVSTFHAF 90 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 +++ + S+F+I DE +LI+E + Sbjct: 91 GVKVLRSHIDKIGWRSNFSIYDETDRNQLIKECGREL 127 >gi|58584885|ref|YP_198458.1| superfamily I DNA/RNA helicase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419201|gb|AAW71216.1| Superfamily I DNA and RNA helicase, UvrD [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 638 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 43/168 (25%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 ++ + L++ +Q + + A AG+GKT + R+ ++ AH +L + Sbjct: 1 MNDYLSLLN--PEQQSAVTKVDGPVLILAGAGTGKTRTITSRIAHIIRNGYAHSDEILAV 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RVL++ Sbjct: 59 TFTNKAANEMVSRVLKLTGT---------------------------------------- 78 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L + T HA I+++ + +F I + ++I+ Sbjct: 79 NILWLGTFHAIAAKILRRHADIVGLNPNFTIIGVDDQLQVIKNIINEV 126 >gi|226226951|ref|YP_002761057.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27] gi|226090142|dbj|BAH38587.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27] Length = 820 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 58/181 (32%), Gaps = 43/181 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81 + A V A AGSGKT +L R+ RL+ N P +L +T T AA EM R Sbjct: 33 QTEAVFHDDGPALVLAGAGSGKTRVLTTRIARLIGTMNVAPHEILAVTFTNKAAGEMRAR 92 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + + + P G+ T HA Sbjct: 93 IAKFLG--------------------------------------HEPKGMWCGTFHALGA 114 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 +++ +F I DE+ + A K + L E KA + + + Sbjct: 115 RMLRGVAPLVGREQNFTIYDEDDAIG----AVKRVMERRNLSPKEFAPKAILSAISSAKN 170 Query: 202 E 202 Sbjct: 171 A 171 >gi|224369743|ref|YP_002603907.1| RecB [Desulfobacterium autotrophicum HRM2] gi|223692460|gb|ACN15743.1| RecB [Desulfobacterium autotrophicum HRM2] Length = 1242 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 75/189 (39%), Gaps = 12/189 (6%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT+ + +RL+L + P +L +T T AA E+ R+ Sbjct: 17 LIEASAGTGKTYTIAALYIRLVLGHGKENGFSRPLVPPEILVVTFTNAATQELRERIRAR 76 Query: 86 ITAWSHLSDEILSAEITKIQGKKP-NKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 +T + K + D+ +LL + TIHA+C+ ++ Sbjct: 77 LTEACAFFRGRGGGDPFLQGLKDDYSPGDLPAMANLLERAALWMDESAIHTIHAWCQRML 136 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204 Q ++ S F + E L+EEA + + E +A + ++ D+ Sbjct: 137 FQHAFDS--LSLFDLTLEPGDDDLLEEAVWDFWRTNFYPRDVETLQALGQATGLTTPADL 194 Query: 205 ETLISDIIS 213 + +++ Sbjct: 195 LKKVRPLMA 203 >gi|260654704|ref|ZP_05860194.1| UvrD/REP helicase family protein [Jonquetella anthropi E3_33 E1] gi|260630720|gb|EEX48914.1| UvrD/REP helicase family protein [Jonquetella anthropi E3_33 E1] Length = 1181 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 64/159 (40%), Gaps = 16/159 (10%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S + A+ R VSA AG+GKT L R L + A ++L LT T+ AA E Sbjct: 22 SALPEQAEAATSSERLTVVSAGAGTGKTWTLAWRFLWCMAQGAPAPSILTLTFTEKAAEE 81 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ + + + E ++++ +++ R L + + TIH Sbjct: 82 MRSRIAALTEGVARQAKEAGCVRLSEV---------LNEGRRCLDSAY-------ISTIH 125 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 FC ++++ L ++ + + + + + Sbjct: 126 GFCLRVIKETGLSLPVSPSCRLVSAPEEEFFWRQVADAL 164 >gi|159901112|ref|YP_001547359.1| UvrD/REP helicase [Herpetosiphon aurantiacus ATCC 23779] gi|159894151|gb|ABX07231.1| UvrD/REP helicase [Herpetosiphon aurantiacus ATCC 23779] Length = 758 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 38/162 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 LI +Q V A GSGKT +L R+ L+ P +L +T T A Sbjct: 6 LIGLNAQQQRAVQAIHGPVLVLAGPGSGKTRVLTHRIAYLINEVGVRPYNILAVTFTNKA 65 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ +I S+A +++ Sbjct: 66 AREMRERIGNLIGE--------------------------SRAHDVMM-----------G 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ C +++ + F + D + ++++++ + Sbjct: 89 TFHSICARWLRRDIQHLQRANDFVVYDADDQQRVMKQILREL 130 >gi|328541555|ref|YP_004301665.1| UvrD/REP helicase [Polymorphum gilvum SL003B-26A1] gi|326415759|gb|ADZ72821.1| UvrD/REP helicase [Polymorphum gilvum SL003B-26A1] Length = 426 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 38/149 (25%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 + A + + A G+GKT LV RV LL P +L LT + AA EM+ R+ Sbjct: 201 QATAAGHRGGAYLLEAGPGTGKTQTLVARVEGLLADGVDPRRILLLTFSNKAAGEMAERI 260 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 K+P+ + + + T HAF Sbjct: 261 AR----------------------KRPDAA----------------AAMWIGTFHAFGLD 282 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEE 171 I+++F E + + D ++ +L+EE Sbjct: 283 IIRRFYAELGLQKDPRMMDRTEAVELLEE 311 >gi|119945195|ref|YP_942875.1| exodeoxyribonuclease V, beta subunit [Psychromonas ingrahamii 37] gi|119863799|gb|ABM03276.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Psychromonas ingrahamii 37] Length = 1226 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 81/207 (39%), Gaps = 15/207 (7%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT+ + +RLLL + +L +T T+AA AE+ +R+ E Sbjct: 31 LIEASAGTGKTYTIASLFIRLLLGHGEQAAHQGPLTVDQILVVTFTEAATAELRNRIRER 90 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 I L ++ Q D A LL + TIH FC+ ++ Sbjct: 91 IQD-VRLDFIQGESDNPFTQSLLKEVVDHQVAIRLLRFAELQMDEAAIFTIHGFCQRMLM 149 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 Q E+ S F E +L++ A + + L + + E N ++ Sbjct: 150 QNAFESG--SLFEQNLLEDDAQLLQLACNDFWRTFFYGLSTPLTELIFSYWE--NPGQLQ 205 Query: 206 TLISDIISNRTALKLIFFFFSYLWRRK 232 + +S R+ L + + ++ K Sbjct: 206 KNLRPFLS-RSDLHFLPKINDFDFKAK 231 >gi|42522842|ref|NP_968222.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100] gi|39574038|emb|CAE79215.1| ATP-dependent DNA helicase [Bdellovibrio bacteriovorus HD100] Length = 672 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 56/158 (35%), Gaps = 39/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 +Q + A AGSGKT +LV R RL+ A + LT T AA E+ Sbjct: 8 NPEQQKAVKHNFGPLLILAGAGSGKTTVLVSRTGRLISERVAQAQEICVLTFTNKAAREL 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 HRV + + + G+ T H+ Sbjct: 68 KHRVGAKLGS--------------------------------------SGSGMWAGTFHS 89 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 F I+++F A ++ +F I D+ ++++ K Sbjct: 90 FGLQILRRFHKHAGLSPYFGIVDQSDCNAIVKDLIKDI 127 >gi|167772669|ref|ZP_02444722.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM 17241] gi|167665147|gb|EDS09277.1| hypothetical protein ANACOL_04050 [Anaerotruncus colihominis DSM 17241] Length = 866 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 75/186 (40%), Gaps = 40/186 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L + + ++++ D S + A AG+GKT L +RV L+++ A P +LCLT T A Sbjct: 20 LHAPNEQQRVVIGDTAHSILLLAGAGTGKTDTLARRVANLIVSGAAAPEEILCLTFTNRA 79 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 EM R+ + + + V Sbjct: 80 CREMIERIETVAGEAAR--------------------------------------DVAVH 101 Query: 135 TIHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T+H+FC ++++ P ++ F + D + +++ A + TL + + ++ F Sbjct: 102 TVHSFCARMLRETPAARTDLGRDFTVCDAADALEIVRLAVERTLGREIDGRSAQILLDFI 161 Query: 194 EILEIS 199 +++ + Sbjct: 162 GLVKDA 167 >gi|88608415|ref|YP_506245.1| UvrD/Rep family helicase [Neorickettsia sennetsu str. Miyayama] gi|88600584|gb|ABD46052.1| helicase, UvrD/Rep family [Neorickettsia sennetsu str. Miyayama] Length = 630 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 44/189 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 ++ ++L + A AG+GKT LV R+ L+ + AHP+ ++ +T AA Sbjct: 14 MNLNDEQRLAVETVNGPVLILAGAGTGKTKTLVHRIAHLIRSGYAHPNQIMAVTFANKAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV EI+ + T Sbjct: 74 NEMIQRVNEIVGEMKFH---------------------------------------WIGT 94 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 HA I++ + F I D + +++++ + ++ ++ L K + + Sbjct: 95 FHAAAAKILRIEAEKLGFKPDFTILDVDDQVRMLQKVAQ----EKKIEADKALLKKYLSV 150 Query: 196 LEISNDEDI 204 + D+ Sbjct: 151 ISAWKDKAF 159 >gi|71275503|ref|ZP_00651789.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Dixon] gi|71900751|ref|ZP_00682872.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1] gi|170729288|ref|YP_001774721.1| DNA-dependent helicase II [Xylella fastidiosa M12] gi|71163803|gb|EAO13519.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Dixon] gi|71729481|gb|EAO31591.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1] gi|167964081|gb|ACA11091.1| DNA helicase II [Xylella fastidiosa M12] Length = 723 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 62/165 (37%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHT 71 +D ++Q + E + A+ + A AGSGKT +L R++ L + +++ +T T Sbjct: 1 MLDHLNQNQREAVAAA--PGHYLILAGAGSGKTRVLTHRIVWLNEVNGVPTHSMMAVTFT 58 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA E+ R+ + + G+ Sbjct: 59 NKAAGEIQQRID--------------------------------------LQLRHGKRGM 80 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ +++ +A + +F + D + +L++ +S Sbjct: 81 WIGTFHSLAHRLLRLHWNDATLPENFQVIDSDDQLRLVKRVIQSL 125 >gi|251789629|ref|YP_003004350.1| exodeoxyribonuclease V subunit beta [Dickeya zeae Ech1591] gi|247538250|gb|ACT06871.1| exodeoxyribonuclease V, beta subunit [Dickeya zeae Ech1591] Length = 1224 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 86/230 (37%), Gaps = 32/230 (13%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHR 81 + S + A+AG+GKT + +RL+L + +P +L +T T AA E+ R Sbjct: 18 SGSRLIEASAGTGKTFTIAMLYVRLVLGHGGEQAFSRPLNPPEILVVTFTDAATRELRDR 77 Query: 82 VLEIITAWSHL-----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 + + + +D+ + +++ P + AR L + E V TI Sbjct: 78 IRARLAQAAAYFQPGGNDKQDDPLLHELRADYPPEQWPDCARKLQLAA-EWMDEAAVSTI 136 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN----------- 185 H++C ++ + ++ S F E ++ E + + + Sbjct: 137 HSWCNRMLGEHAFDSG--SLFNQTLETDQSDVLLEVVRDYWRTFFFPLDARDVLELRDNW 194 Query: 186 ---EELKKAFYEILEISNDEDIETLISDIIS-NRTALKLIFFFFSYLWRR 231 E ++ +LE +++ I+ L + I S R W + Sbjct: 195 LSPESFYRSVTPLLEYADEIGIDELPAQIFSVARDEKTRRLAALKAPWPQ 244 >gi|170719947|ref|YP_001747635.1| exodeoxyribonuclease V subunit beta [Pseudomonas putida W619] gi|169757950|gb|ACA71266.1| exodeoxyribonuclease V, beta subunit [Pseudomonas putida W619] Length = 1223 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 77/215 (35%), Gaps = 31/215 (14%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT + LRL+L + P +L +T T AA E+ R+ Sbjct: 15 GSQLIEASAGTGKTFTISALYLRLILGHGGEQAFGRELLPPQILVVTFTDAATKELRERI 74 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFC 140 + + L + + + + + + L ++ V TIH +C Sbjct: 75 RARLAEAARFFRGELQEADPLLHQLRDDYPQEHWPRCANRLEIAVQWMDEAAVSTIHGWC 134 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE------------- 187 + ++++ ++ S F + E L+ + + + E Sbjct: 135 QRMLREHAFDSG--SLFTQSLETDHSDLLGQVMRDYWRRFCYGMHGEALGWVRSHWGSPD 192 Query: 188 -----LKKAFYEILEISNDEDIETLISDIISNRTA 217 ++ F + ++++ + LI + R Sbjct: 193 ALLPRIRPLFGRLRAQQDEQEPQALIDAALQQRAD 227 >gi|71899705|ref|ZP_00681857.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1] gi|71730500|gb|EAO32579.1| ATP-dependent DNA helicase UvrD [Xylella fastidiosa Ann-1] Length = 723 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 62/165 (37%), Gaps = 41/165 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHT 71 +D ++Q + E + A+ + A AGSGKT +L R++ L + +++ +T T Sbjct: 1 MLDHLNQNQREAVAAA--PGHYLILAGAGSGKTRVLTHRIVWLNEVNGVPTHSMMAVTFT 58 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA E+ R+ + + G+ Sbjct: 59 NKAAGEIQQRID--------------------------------------LQLRHGKRGM 80 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ +++ +A + +F + D + +L++ +S Sbjct: 81 WIGTFHSLAHRLLRLHWNDATLPENFQVIDSDDQLRLVKRVIQSL 125 >gi|163785183|ref|ZP_02179869.1| Superfamily I DNA and RNA helicase [Hydrogenivirga sp. 128-5-R1-1] gi|159879550|gb|EDP73368.1| Superfamily I DNA and RNA helicase [Hydrogenivirga sp. 128-5-R1-1] Length = 226 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 44/201 (21%), Positives = 72/201 (35%), Gaps = 45/201 (22%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 S ++ +++ + E +L D V A AGSGKT ++ +++ L +L + Sbjct: 1 MSSILEGLNEAQKEAVLYFD--SPLLVLAGAGSGKTRVITHKIMFLTQEFGIDIDRILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA+EM RV + K+PN Sbjct: 59 TFTNKAASEMKERVKNALG-----------------LEKEPN------------------ 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ I++ FAI DEE SKKL+ K + LD + Sbjct: 84 ---WITTFHSLSAKILRIEAQRLGYNRDFAIYDEEDSKKLL----KDIVEEANLDKDLYK 136 Query: 189 KKAFYEILEISNDEDIETLIS 209 + I+ E+L+ Sbjct: 137 PERLKNIISQIKQNLDESLLD 157 >gi|291060388|gb|ADD73123.1| ATP-dependent helicase PcrA [Treponema pallidum subsp. pallidum str. Chicago] Length = 685 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 42/156 (26%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L + ++++ + A AGSGKT ++ ++ L+ + P +L +T T A Sbjct: 20 LSALNEAQRQAVCHYGSPLLILAGAGSGKTRVITTKIAHLIRSRQVRPEQILAVTFTNKA 79 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKV 133 A EM R LE+ G + Sbjct: 80 AREMRTR----------------------------------------ACALESAAQGATI 99 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T HA I++++ + + HF+I D+ + L+ Sbjct: 100 CTFHALGVWILRRYAVRLGLNPHFSIYDDHDVRALL 135 >gi|91784748|ref|YP_559954.1| putative DNA helicase [Burkholderia xenovorans LB400] gi|91688702|gb|ABE31902.1| Putative DNA helicase [Burkholderia xenovorans LB400] Length = 708 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 60/173 (34%), Gaps = 38/173 (21%) Query: 12 ETIDLISQTKSEQLLASD--------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63 +T +++ Q A + P + V A AGSGKT+ L RV L++ A P Sbjct: 11 DTAAWLARLNDAQREAVEYGADTPTAPPGALLVIAGAGSGKTNTLAHRVANLVVNGADPR 70 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L LT ++ AA EM RV I A L Sbjct: 71 RILLLTFSRRAALEMIRRVTRIAGA------------------------------ALGTR 100 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G T H+ +++++ + F I D E S L+ + Sbjct: 101 AALAQGLTWSGTFHSVGARLLREYADLIGLAPAFTINDREDSADLMNLVRHEL 153 >gi|15640012|ref|NP_219465.1| DNA helicase II (uvrD) [Treponema pallidum subsp. pallidum str. Nichols] gi|189026251|ref|YP_001934023.1| DNA helicase II [Treponema pallidum subsp. pallidum SS14] gi|3323356|gb|AAC65978.1| DNA helicase II (uvrD) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018826|gb|ACD71444.1| DNA helicase II [Treponema pallidum subsp. pallidum SS14] Length = 670 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 42/156 (26%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L + ++++ + A AGSGKT ++ ++ L+ + P +L +T T A Sbjct: 5 LSALNEAQRQAVCHYGSPLLILAGAGSGKTRVITTKIAHLIRSRQVRPEQILAVTFTNKA 64 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG-GLKV 133 A EM R LE+ G + Sbjct: 65 AREMRTR----------------------------------------ACALESAAQGATI 84 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T HA I++++ + + HF+I D+ + L+ Sbjct: 85 CTFHALGVWILRRYAVRLGLNPHFSIYDDHDVRALL 120 >gi|308189989|ref|YP_003922920.1| ATP-dependent DNA helicase [Mycoplasma fermentans JER] gi|307624731|gb|ADN69036.1| ATP-dependent DNA helicase [Mycoplasma fermentans JER] Length = 723 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E ++ ++ + E L+ D + A AGSGKT +L ++V L+ P ++L +T Sbjct: 6 EILNSLNAEQKEALMYFD--GPLRIIAGAGSGKTRVLTRKVAYLINELGISPRSILAVTF 63 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EMS RV + + ++ D Sbjct: 64 TNKAANEMSERVKQYVGEEANQID------------------------------------ 87 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + T H+ I+++ + N+++ F I DE K +I + K+ Sbjct: 88 --ICTFHSLSSKILRKEAIHVNLSNDFQIIDETDKKTIIAQLYKA 130 >gi|319777271|ref|YP_004136922.1| ATP-dependent DNA helicase [Mycoplasma fermentans M64] gi|318038346|gb|ADV34545.1| ATP-dependent DNA helicase [Mycoplasma fermentans M64] Length = 723 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E ++ ++ + E L+ D + A AGSGKT +L ++V L+ P ++L +T Sbjct: 6 EILNSLNAEQKEALMYFD--GPLRIIAGAGSGKTRVLTRKVAYLINELGISPRSILAVTF 63 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EMS RV + + ++ D Sbjct: 64 TNKAANEMSERVKQYVGEEANQID------------------------------------ 87 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + T H+ I+++ + N+++ F I DE K +I + K+ Sbjct: 88 --ICTFHSLSSKILRKEAIHVNLSNDFQIIDETDKKTIIAQLYKA 130 >gi|209694270|ref|YP_002262198.1| exodeoxyribonuclease V beta chain [Aliivibrio salmonicida LFI1238] gi|208008221|emb|CAQ78366.1| exodeoxyribonuclease V beta chain [Aliivibrio salmonicida LFI1238] Length = 1208 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 65/175 (37%), Gaps = 17/175 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA AE+ R+ Sbjct: 22 LIEASAGTGKTFTIASLYLRLLLGHGDENSRHSEELTVDKILVVTFTEAATAELRERIRA 81 Query: 85 IITAWSHLSDEILSAEITK-----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 I + K I SD A H+L+ + + TIH F Sbjct: 82 KIHDARLAFARAVHKSDYKSGDPVIDPLLAAISDHKSAAHILLNAERSMDEASIFTIHGF 141 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 C+ ++ Q E+ + F KL+ + + + ++ Y+ Sbjct: 142 CQRMLTQNAFESG--AQFESEFVTDQAKLMHQVAADFWRRSFYHLPKMVAESVYD 194 >gi|323453081|gb|EGB08953.1| hypothetical protein AURANDRAFT_63493 [Aureococcus anophagefferens] Length = 787 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 38/156 (24%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 + + T+ +Q + A AGSGKT L +RV R + + A P +L LT + A Sbjct: 1 MRALTEEQQAAVDYRFDAPLAIVAGAGSGKTETLTRRVARAISSGARPEGVLVLTFSNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E+ R+ + + E Sbjct: 61 ARELRGRLAKHLGEAVAARVECA------------------------------------- 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H+FC ++++F EA + F+I + + L++ Sbjct: 84 TFHSFCLRLLRRFGREAGLGPDFSIFGDAAQRALVK 119 >gi|258593628|emb|CBE69969.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 991 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 69/200 (34%), Gaps = 41/200 (20%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLL 66 E + + + ++Q + + A AG+GKT ++ R+ L+ A P +L Sbjct: 9 SERNPAMGVEGLNAAQQAAVTHGDGPLLIIAGAGTGKTTVIAHRIAHLINSRRARPEQVL 68 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 LT T+ AAAEM RV ++ + Sbjct: 69 ALTFTEKAAAEMERRVDLLVPYGFTDT--------------------------------- 95 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + T HAF + ++++ L ++ F + + +E Sbjct: 96 -----WISTFHAFGDRVLREHALVLGLSPDFRLLTVPEQVIFFQEHLFELPLDYFRPLGS 150 Query: 187 ELK--KAFYEILEISNDEDI 204 L+ +A ++ + DED+ Sbjct: 151 PLRHVQALLQLFSRAKDEDV 170 >gi|238809942|dbj|BAH69732.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 723 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 41/165 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 E ++ ++ + E L+ D + A AGSGKT +L ++V L+ P ++L +T Sbjct: 6 EILNSLNAEQKEALMYFD--GPLRIIAGAGSGKTRVLTRKVAYLINELGISPRSILAVTF 63 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EMS RV + + E Sbjct: 64 TNKAANEMSERVKQYVG--------------------------------------EEANQ 85 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + + T H+ I+++ + N+++ F I DE K +I + K+ Sbjct: 86 IDICTFHSLSSKILRKEAIHVNLSNDFQIIDETDKKTIIAQLYKA 130 >gi|146284345|ref|YP_001174498.1| exodeoxyribonuclease V, beta subunit [Pseudomonas stutzeri A1501] gi|145572550|gb|ABP81656.1| exodeoxyribonuclease V, beta subunit [Pseudomonas stutzeri A1501] Length = 1182 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 9/151 (5%) Query: 35 WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT L RLLL +L +T+T AA AE+ R+ + + Sbjct: 15 LIEASAGTGKTWTLTALYARLLLERQLSVGQILVVTYTTAATAELRERIRARLADLLAVY 74 Query: 94 DEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 D S++ + ++ + P+ + +R L+ + + TIH FC+ +Q EA Sbjct: 75 DGTPSSDDFLNRLHARYPDDA----SRRRLLLAVHGFDEAAIFTIHGFCQRALQDAAFEA 130 Query: 152 N--ITSHFAIADEEQSKKLIEEAKKSTLASI 180 S D E L+ +A +S LA Sbjct: 131 GGDFDSELTADDREIIDALLADAWRSELADA 161 >gi|71909490|ref|YP_287077.1| ATP-dependent DNA helicase Rep [Dechloromonas aromatica RCB] gi|71849111|gb|AAZ48607.1| ATP-dependent DNA helicase Rep [Dechloromonas aromatica RCB] Length = 663 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 55/162 (33%), Gaps = 39/162 (24%) Query: 17 ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 +S +Q A V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 1 MSGLNPQQREAIHYLDGPLLVLAGAGSGKTRVITQKIAYLVQDCGFQPRNIAAITFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ +I++ L++ Sbjct: 61 AKEMQERIGKILSK-------------------------------------PQADDLQIS 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I+++ F+I D +I EA K+ Sbjct: 84 TFHSLGVRILREEAKALGYKPRFSIFDSADCAGIISEAAKTV 125 >gi|251772975|gb|EES53533.1| UvrD/REP helicase [Leptospirillum ferrodiazotrophum] Length = 1166 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 62/154 (40%), Gaps = 6/154 (3%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT L Q L +L+ +L +T T+AA E+ R+ +++ + Sbjct: 17 LIEASAGTGKTFALTQLYLAAVLSGVPVEQILVVTFTEAATDELRGRLRTLLSHARSHAL 76 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + + LL L V TIH+FC +++++ E Sbjct: 77 GVAPPPEILPLVADVRPEHL----TLLSRALFDFDRAPVATIHSFCRRVLREYAFE--FD 130 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + F++ E + + + + ++ + + Sbjct: 131 APFSLELESSDRAFKKASVREVWRRLVYREDPRI 164 >gi|298372545|ref|ZP_06982535.1| helicase [Bacteroidetes oral taxon 274 str. F0058] gi|298275449|gb|EFI17000.1| helicase [Bacteroidetes oral taxon 274 str. F0058] Length = 1036 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 7/155 (4%) Query: 34 AWVSANAGSGKTHILVQR-VLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWSH 91 + A+AGSGKT+ L + +LRL++ +L +T TK A AEM R+L + + ++ Sbjct: 2 LILKASAGSGKTYNLAMQFILRLVVEGDEAFRHILAVTFTKDATAEMKLRILADLYSIAN 61 Query: 92 LSDEILSAEITKIQGKKPNKSDMS---KARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 +++ L I + + + +D A L+ IL G V TI +F + +++ Sbjct: 62 GNNQSLIDNIKRELPGRRSITDEQIKVVAHRALLKILHDYGNFNVGTIDSFFQRVLRNLA 121 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 E S F I + K + EA + +A D Sbjct: 122 RELGKGSRFNI--DLNDIKAVAEAVREVIAQAHND 154 >gi|239917997|ref|YP_002957555.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665] gi|281415827|ref|ZP_06247569.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665] gi|239839204|gb|ACS31001.1| DNA/RNA helicase, superfamily I [Micrococcus luteus NCTC 2665] Length = 1176 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 23/172 (13%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63 +S ++ + + L T+ + + + P V A AGSGKT + RV+ L+ P Sbjct: 22 HSPEDIAARLRLPPPTEEQAEVVTAPLTPRLVLAGAGSGKTATMADRVVWLVANGLVRPD 81 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L +T T+ AA E++ R+ + A E I G D+ Sbjct: 82 EVLGVTFTRKAAGELAERINGRVDALLRSGLE--------IPGFDGEPEDL--------- 124 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G V T H++ A+++ L + + + +L+ +S Sbjct: 125 -----GRASVSTYHSYAGALVRDHGLRIGVEPEARLLGGADAHRLMGAVVRS 171 >gi|291542836|emb|CBL15946.1| ATP-dependent DNA helicase PcrA [Ruminococcus bromii L2-63] Length = 749 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 41/161 (25%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 ++ + + + ++ + A AGSGKT +LV R+ +L P +L +T T AA Sbjct: 13 MNDMQKQAVFCTE--GPLLILAGAGSGKTTVLVNRIAYILQCELCKPWQILAITFTNKAA 70 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ R+ + + T Sbjct: 71 GELKERICAAVPEGG--------------------------------------ADIWAAT 92 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ C I++++ TSHF + + KKL+++ K Sbjct: 93 FHSTCARILRRYGDRIGYTSHFTVYGTDDQKKLVKDILKQL 133 >gi|108757579|ref|YP_629768.1| ATP-dependent DNA helicase PcrA [Myxococcus xanthus DK 1622] gi|108461459|gb|ABF86644.1| ATP-dependent DNA helicase PcrA [Myxococcus xanthus DK 1622] Length = 783 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 41/168 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 S ++ ++ + E +L D V + AGSGKT ++ +RV L+ + N +P +L Sbjct: 7 HESALLEDLNAPQREAVLHGD--GPLLVLSGAGSGKTRVITRRVAYLVKVHNVYPWRILA 64 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM R+++++ A Sbjct: 65 VTFTNKAAREMRERLVQLLGA--------------------------------------Q 86 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 L V T H+ I+++ +T F I D+ +++ A + Sbjct: 87 ANELVVSTFHSAAAQILRREAEHVGLTRSFVIYDDSDQLNVVKRAMRE 134 >gi|308049020|ref|YP_003912586.1| exodeoxyribonuclease V, beta subunit [Ferrimonas balearica DSM 9799] gi|307631210|gb|ADN75512.1| exodeoxyribonuclease V, beta subunit [Ferrimonas balearica DSM 9799] Length = 1218 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 14/173 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT+ + LRL+L + P +L +T TKAA E+ R+ Sbjct: 17 LIEASAGTGKTYTIAALYLRLVLGHGGSAAHPHPLTPEQILVVTFTKAATEELKDRIRAR 76 Query: 86 ITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + + + + + P + A +L + V TIH +C+ + Sbjct: 77 LVEGAACFRGLAEPDPYLASLMADFPAEQHPHCAL-VLDQAAQLMDLAAVHTIHGWCQRM 135 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 +++ ++ S F+ E + L EEA + + + A + Sbjct: 136 LREHAFDSG--SLFSQEMEADTTPLREEAVRDYWRRFLYPQPRAVLAAITGLY 186 >gi|222100309|ref|YP_002534877.1| ATP-dependent DNA helicase [Thermotoga neapolitana DSM 4359] gi|221572699|gb|ACM23511.1| ATP-dependent DNA helicase [Thermotoga neapolitana DSM 4359] Length = 649 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 39/178 (21%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 + + EQ A + V A GSGKT ++ ++ LL PS +L +T T+ Sbjct: 14 LSFLEDLDEEQRKAVVESEGRCIVIAGPGSGKTRVITYKIAYLLANGVDPSRILLVTFTR 73 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA EM R + + E++++ Sbjct: 74 AAAREMVER-----------AKMVTGRELSEMLA-------------------------- 96 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 T H C ++++ + +++I D E S+ L+ A+ L + + + Sbjct: 97 -GTFHHVCNYFLRKYAPYVGLDRNYSILDREDSESLMRHARSKFLERKGREERKNFPQ 153 >gi|260752918|ref|YP_003225811.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552281|gb|ACV75227.1| UvrD/REP helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 768 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 70/198 (35%), Gaps = 43/198 (21%) Query: 9 EHSETIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66 E D +++ EQ + + V A AG+GKT L R+ L+ A PS +L Sbjct: 12 ETPPEPDYLARLNPEQKEVVRTTEGALLVLAGAGTGKTAALTARLAYLVETLKAWPSQIL 71 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM RV +++ + + Sbjct: 72 AVTFTNKAAREMQMRVGDLLGSQAENMP-------------------------------- 99 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + T H+ ++++ + S F I D + +L+++ + +D + Sbjct: 100 -----WLGTFHSIAAKMLRRHAELVGLKSDFIILDTDDQIRLLKQ----LIQGQGIDEKQ 150 Query: 187 ELKKAFYEILEISNDEDI 204 K I++ + + Sbjct: 151 WPAKQLAGIIDRWKNRGL 168 >gi|238025782|ref|YP_002910013.1| UvrD/REP helicase [Burkholderia glumae BGR1] gi|237874976|gb|ACR27309.1| UvrD/REP helicase [Burkholderia glumae BGR1] Length = 694 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 ++ +SE + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNAAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIENKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +++E Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMVQE 133 >gi|225017584|ref|ZP_03706776.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum DSM 5476] gi|224949644|gb|EEG30853.1| hypothetical protein CLOSTMETH_01512 [Clostridium methylpentosum DSM 5476] Length = 865 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 43/153 (28%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 + ++ + + R+ + A AG+GKT+ L R+++LL A P +LCLT T A EM Sbjct: 12 NQQQKYVVDELGRNILLLAAAGTGKTNTLALRIVKLLREGRAAPEQVLCLTFTNRACKEM 71 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV--QTI 136 R++ + P GLK+ +T Sbjct: 72 KERIVSAVG----------------------------------------PEGLKIEVRTF 91 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 H+FC ++Q F ++ S F I DE+ ++L+ Sbjct: 92 HSFCYELIQAFVKTTDLPSGFVIYDEDDCRELL 124 >gi|319902330|ref|YP_004162058.1| UvrD/REP helicase [Bacteroides helcogenes P 36-108] gi|319417361|gb|ADV44472.1| UvrD/REP helicase [Bacteroides helcogenes P 36-108] Length = 1104 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 76/193 (39%), Gaps = 27/193 (13%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW--- 89 A+AGSGKT L ++ L+ N H +L +T T A AEM R+L+ + Sbjct: 4 LVYKASAGSGKTFTLAVEYIKHLIQNPHAYRQILAVTFTNKATAEMKERILQQLYGIWKG 63 Query: 90 SHLSDEILSAEITKIQGKKPN----------------KSDMSKARHLLITILETPGGLKV 133 SD LS + +K N + +A L +L +V Sbjct: 64 DPASDAYLSRIKEDLGKRKDNLSETEVISPFTAGSEDEELRKRAGMALQYMLHDYSRFRV 123 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 +TI +F +++M+ E ++ + I E + +++ +A S + + Sbjct: 124 ETIDSFFQSVMRNLARELELSPNLNI--ELNNTEVLSDAVDSLIEKL-----TATSPVLA 176 Query: 194 EILEISNDEDIET 206 +LE N+ + Sbjct: 177 WLLEYINERIADD 189 >gi|225873408|ref|YP_002754867.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium capsulatum ATCC 51196] gi|225793677|gb|ACO33767.1| ATP-dependent DNA helicase, UvrD/REP family [Acidobacterium capsulatum ATCC 51196] Length = 943 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 66/171 (38%), Gaps = 45/171 (26%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 + +D ++ ++ + + A AGSGKT ++ R+ L+ P ++L +T Sbjct: 3 QLLDKLN--PQQRAGVENVDGPVLILAGAGSGKTRVITHRIAYLIQERGVAPDSILAVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM+ RV + + S L+ +L+ Sbjct: 61 TNKAAKEMAERV-DALIGHSTLAKPVLA-------------------------------- 87 Query: 131 LKVQTIHAFCEAIMQQFPLEA-----NITSHFAIADEEQSKKLIEEAKKST 176 T H+FC ++++ +T FAI DE + L+++ + Sbjct: 88 ----TFHSFCVRMLRRDIEALRIGNEGLTKTFAIYDESDQQSLVKQIMRRM 134 >gi|327482729|gb|AEA86039.1| exodeoxyribonuclease V, beta subunit [Pseudomonas stutzeri DSM 4166] Length = 1182 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 9/151 (5%) Query: 35 WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT L RLLL +L +T+T AA AE+ R+ + + Sbjct: 15 LIEASAGTGKTWTLTALYARLLLERQLSVGQILVVTYTTAATAELRERIRARLADLLAVY 74 Query: 94 DEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 D S++ + ++ + P+ + +R L+ + + TIH FC+ +Q EA Sbjct: 75 DGTPSSDDFLNRLHARYPDDA----SRRRLLLAVHGFDEAAIFTIHGFCQRALQDAAFEA 130 Query: 152 N--ITSHFAIADEEQSKKLIEEAKKSTLASI 180 S D E L+ +A +S LA Sbjct: 131 GGDFDSELTADDREIIDALLADAWRSELADA 161 >gi|171915021|ref|ZP_02930491.1| ATP-dependent DNA helicase [Verrucomicrobium spinosum DSM 4136] Length = 665 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 39/170 (22%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 S D ++ + E + + A AG+GKT + R+ ++ PS +L +T Sbjct: 1 MSFAFDQLNLPQREAVKTIH--GPVLILAGAGTGKTRTVTMRIAHMVDEGISPSNILSVT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV +++ Sbjct: 59 FTNKAANEMRERVKDMLGPAKGKD------------------------------------ 82 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 + + T HAFC +++ ++F+I + + L+++ + Sbjct: 83 -ITLGTFHAFCMKLLRVHAEAIGYKTNFSIYSQSEQISLVKKILARLMTK 131 >gi|120436669|ref|YP_862355.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Gramella forsetii KT0803] gi|117578819|emb|CAL67288.1| PcrA-like UvrD/Rep family ATP-dependent DNA helicase [Gramella forsetii KT0803] Length = 787 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 57/175 (32%), Gaps = 38/175 (21%) Query: 3 YHNSFQEHSETIDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61 Y + F+ +++ Q V A AGSGKT +L R+ L+ Sbjct: 5 YLSVFKNGENLEAYLAELNDAQRAPVLQKDGPMIVIAGAGSGKTRVLTYRIAYLMNQGVD 64 Query: 62 PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121 +L LT T AA EM R+ +I+ + + Sbjct: 65 AFNILSLTFTNKAAREMKQRISKIVGSSEAKN---------------------------- 96 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L + T H+ I++ + S+F I D + S +I K Sbjct: 97 ---------LWMGTFHSVFAKILRFEADKMGYPSNFTIYDTQDSHSVIRAIIKEM 142 >gi|160875207|ref|YP_001554523.1| exodeoxyribonuclease V subunit beta [Shewanella baltica OS195] gi|160860729|gb|ABX49263.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS195] gi|315267400|gb|ADT94253.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS678] Length = 1273 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 17/184 (9%) Query: 10 HSETIDLISQTKSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHP 62 SE I L + A DP S + A+AG+GKT+ + LRLLL + A P Sbjct: 1 MSEQIQLNAAALHSAPQALDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGIAAP 60 Query: 63 ---STLLCLTHTKAAAAEMSHRVLEIIT-AWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118 +L +T T AA E+ R+ I A+ ++ + +S+ + A Sbjct: 61 LTCEQILVVTFTNAATEELRDRIRRRIQVAFKCFLGLTIADPFVQALYDNTPESERAIAL 120 Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI--TSHFAIADEEQSKKLIEEAKKST 176 L++ + TIH FC+ I+ E+++ S F + D E + A + Sbjct: 121 RRFDLALKSLDEAAIFTIHGFCQRILSDLAFESSLLFESDFTLDDSE----FLHHAVRDF 176 Query: 177 LASI 180 Sbjct: 177 WREA 180 >gi|290580396|ref|YP_003484788.1| ATP-dependent DNA helicase [Streptococcus mutans NN2025] gi|254997295|dbj|BAH87896.1| ATP-dependent DNA helicase [Streptococcus mutans NN2025] Length = 758 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 68/193 (35%), Gaps = 44/193 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L + + + A AGSGKT +L R+ L+ +P +L +T T A Sbjct: 5 LHGMNEKQAQAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFINPWNILAITFTNKA 64 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R A + + E L + Sbjct: 65 ACEMKERAF----ALNAATQETL-----------------------------------IA 85 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C I+++ +F I D + + L++ K+ +D+ + ++A Sbjct: 86 TFHSMCVRILRRDADHIGYNRNFTIVDPGEQRTLMKRIFKNF----NIDSKKWNERAVLA 141 Query: 195 ILEISNDEDIETL 207 + + ++ ++ + Sbjct: 142 AISNAKNDLLDEI 154 >gi|148285059|ref|YP_001249149.1| DNA helicase II, CAI27690 [Orientia tsutsugamushi str. Boryong] gi|146740498|emb|CAM81056.1| DNA helicase II, CAI27690 [Orientia tsutsugamushi str. Boryong] Length = 716 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 40/156 (25%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L+ ++ V A AG+GKT ++ R+ ++ A P +L +T T A Sbjct: 5 LLDLNPEQREAVITTNGPLLVLAGAGTGKTRVITYRIAYIIDQFMASPEEILAVTFTNKA 64 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV E I G+ + Sbjct: 65 ATEMQSRVAE---------------------------------------ITNNTTGIYIG 85 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T HA I++ +TS F+I D+ + ++I+ Sbjct: 86 TFHAIATKILKAHAELVGLTSSFSIIDQSEQVRVIK 121 >gi|293606508|ref|ZP_06688866.1| UvrD/REP family ATP-dependent DNA helicase [Achromobacter piechaudii ATCC 43553] gi|292815131|gb|EFF74254.1| UvrD/REP family ATP-dependent DNA helicase [Achromobacter piechaudii ATCC 43553] Length = 699 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 59/169 (34%), Gaps = 37/169 (21%) Query: 15 DLISQTKSEQLLASD--------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66 D ++ Q A++ V A AGSGKT+ L RV L+L A P +L Sbjct: 13 DPLADLNPAQREAAEFGVGATAGDDGPLLVIAGAGSGKTNTLAHRVAHLILNGADPQRML 72 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 LT ++ AA EM RV ++ +L + Sbjct: 73 LLTFSRRAAQEMDRRVGSVLQRVMNLRGSQ-----------------------------Q 103 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 P T HA +++ L ++ F I D ++ L+ + Sbjct: 104 APSLPWAGTFHAIGARLLRDCALRIGLSEAFTIHDRGDAEDLMGMVRHE 152 >gi|237750192|ref|ZP_04580672.1| predicted protein [Helicobacter bilis ATCC 43879] gi|229374086|gb|EEO24477.1| predicted protein [Helicobacter bilis ATCC 43879] Length = 276 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 44/193 (22%), Positives = 72/193 (37%), Gaps = 28/193 (14%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 T +++A+AGSGKT L R + LL + +L LT TK AA EM R+ + + Sbjct: 6 TNHIFLNASAGSGKTFALCVRYIALLFQGVPANEILTLTFTKKAANEMKERITQNLFLLY 65 Query: 91 HLSDEILSAE------------------ITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 D L I + G K + + K Sbjct: 66 ITQDSKLKEAKEIYKENYKKILKQRDDIIESLLGYNLTKEHIEAQTTKVYKHFLQADK-K 124 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + TI +F ++++F I F + Q L +E + L I D++ Sbjct: 125 ISTIDSFYTQMLRKFAFFIGIRRDF----DMQESGLDDEIFECFLEKIYTDSHLH----- 175 Query: 193 YEILEISNDEDIE 205 +L ++ND +I Sbjct: 176 ETLLSLTNDLNIH 188 >gi|77920551|ref|YP_358366.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380] gi|77546634|gb|ABA90196.1| ATP-dependent DNA helicase [Pelobacter carbinolicus DSM 2380] Length = 678 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 58/164 (35%), Gaps = 38/164 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTK 72 +DL + + ++ + A AGSGKT ++ R+ LL PS +L +T T Sbjct: 1 MDLSALNEQQRAAVRHTEGPLLLLAGAGSGKTRVITSRIAFLLQDRGVPSQAILAVTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV I+ + G+ Sbjct: 61 KAAREMRERVEGIVGR-------------------------------------KQAKGMV 83 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T HA C I+++ + +F+I +LI + + Sbjct: 84 ISTFHALCVRILKEDIEQLGYKKNFSIYGGADQLRLIRDLLQEV 127 >gi|330815075|ref|YP_004358780.1| UvrD/REP helicase [Burkholderia gladioli BSR3] gi|327367468|gb|AEA58824.1| UvrD/REP helicase [Burkholderia gladioli BSR3] Length = 694 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 28/157 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 ++ +SE + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNAAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIENKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM RV +++ + + ++ L V Sbjct: 62 AAEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q + F+I D + +++E Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMVQE 133 >gi|317502698|ref|ZP_07960810.1| ATP-dependent DNA helicase PcrA [Prevotella salivae DSM 15606] gi|315666184|gb|EFV05739.1| ATP-dependent DNA helicase PcrA [Prevotella salivae DSM 15606] Length = 761 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 39/160 (24%) Query: 19 QTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAA 76 + Q A + V A AGSGKT +L ++ L+ P ++L LT T AA Sbjct: 4 ELNDGQRAAVEYCDGPQLVIAGAGSGKTRVLTYKIAYLIDEKQYEPWSILALTFTNKAAN 63 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM +R+ ++ + R+L + T Sbjct: 64 EMRNRIARVVGQ--------------------------DRTRYLYM-----------GTF 86 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ I++ + + F I DE S+ L++ K Sbjct: 87 HSIFSRILRVEAEKLGYSKQFTIYDESDSRSLLKSIIKEM 126 >gi|37528484|ref|NP_931829.1| ATP-dependent DNA helicase Rep [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787922|emb|CAE17039.1| ATP-dependent DNA helicase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 675 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 63/183 (34%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ P + +T T AA EM Sbjct: 4 NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRTCGYQPRHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + GL + T H Sbjct: 64 KERVAQTLGRKEAK-------------------------------------GLMISTFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + S+F++ D++ L+++ L ++ + L+K I Sbjct: 87 LGLEIIKREYKTLGMKSNFSLFDDQDQMALLKDLTADLLE----EDKDLLQKLISTISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|283769206|ref|ZP_06342110.1| putative ATP-dependent helicase PcrA [Bulleidia extructa W1219] gi|283104182|gb|EFC05561.1| putative ATP-dependent helicase PcrA [Bulleidia extructa W1219] Length = 710 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 58/164 (35%), Gaps = 39/164 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D+ S ++ D + V A AGSGKT +L R+ L+ PS +L +T T Sbjct: 1 MLDIQSLNPQQKEAVLDEHQYLRVIAGAGSGKTRVLTMRIAYLMEEKKVWPSKILAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RVL ++ Sbjct: 61 NKAAREMETRVLSLMKEEVSKP-------------------------------------- 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V TIH+ C I++Q F I D E K +++E K Sbjct: 83 TVCTIHSLCVRILRQEIEAMGYPKSFTILDVEDQKAILKEYYKE 126 >gi|59711189|ref|YP_203965.1| exonuclease V (RecBCD complex), beta subunit [Vibrio fischeri ES114] gi|59479290|gb|AAW85077.1| exonuclease V (RecBCD complex), beta subunit [Vibrio fischeri ES114] Length = 1208 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 22/192 (11%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA AE+ R+ Sbjct: 22 LIEASAGTGKTFTIASLYLRLLLGHGDEGTRHQEELTVDRILVVTFTEAATAELRERIRA 81 Query: 85 IITAWSHLSDEILSAEITK-----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 I + K I + D A +L+ + + TIH F Sbjct: 82 KIHDARLAFARAVHNNGYKSGDPVIDPLLASIGDHKSAAQILLNAERSMDEASIFTIHGF 141 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C+ ++ Q E+ + F KL+ + + + ++ Y+ Sbjct: 142 CQRMLTQNAFESG--AQFESEFVTDQAKLMHQVAADFWRRSFYHLPKMVAESVYDCWSSP 199 Query: 200 NDEDIETLISDI 211 + L+ D+ Sbjct: 200 S-----ALLGDM 206 >gi|296115456|ref|ZP_06834090.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769] gi|295978029|gb|EFG84773.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769] Length = 700 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 59/175 (33%), Gaps = 45/175 (25%) Query: 15 DLISQTKSEQLLASDPTR----------SAWVSANAGSGKTHILVQRVLRLLLANAHPST 64 D +S+ Q A V A AGSGKT+ L RV L+ + A P Sbjct: 13 DYLSRLNDAQRQAVTHGTGVSPGGADSSPLLVIAGAGSGKTNTLAHRVAHLIASGADPRR 72 Query: 65 LLCLTHTKAAAAEMS---HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121 +L LT ++ A+ EM+ R+ + + L Sbjct: 73 ILLLTFSRRASVEMTRCVERICKTVLGDKAGP---------------------------L 105 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L T H+ +++++ + + F+I D E S L+ + Sbjct: 106 ADAL-----AWAGTFHSIGARLLREYAQQIGMDPAFSIHDREDSADLMNLIRHDL 155 >gi|163816456|ref|ZP_02207820.1| hypothetical protein COPEUT_02645 [Coprococcus eutactus ATCC 27759] gi|158448156|gb|EDP25151.1| hypothetical protein COPEUT_02645 [Coprococcus eutactus ATCC 27759] Length = 768 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 60/163 (36%), Gaps = 41/163 (25%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 + +S QL A T + A AG+GKT L R L+ S +LC+T T Sbjct: 56 NYLSTLNERQLDAVTTTEGYVRIIAGAGTGKTKALTHRYAYLVNELGISTSNILCVTFTN 115 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EMS R+ ++I Sbjct: 116 KAAREMSKRIRQMIGDSDTGY--------------------------------------- 136 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + T H FC ++++ N +F + D+E ++++++ ++ Sbjct: 137 ICTFHGFCVKLLREDIHAINFPQNFVVMDDEDTEEILKTVYEN 179 >gi|241896132|ref|ZP_04783428.1| ATP-dependent DNA helicase PcrA [Weissella paramesenteroides ATCC 33313] gi|241870646|gb|EER74397.1| ATP-dependent DNA helicase PcrA [Weissella paramesenteroides ATCC 33313] Length = 759 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 40/168 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 + + ++ ++E ++ ++ + A AGSGKT +L RV L+ + P +L + Sbjct: 1 MNPLLAGMNDKQAEAVMTTE--GPLLIMAGAGSGKTRVLTHRVAHLIQDLDVLPWRILAI 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R+ +++ Sbjct: 59 TFTNKAAREMKERISQLVEE-------------------------------------SDA 81 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + V T HA I+++ + F+I D + LI+ K Sbjct: 82 EAVWVSTFHALAVRILRRDIDKLGYKKDFSIIDASAQRTLIKRILKDF 129 >gi|217077082|ref|YP_002334798.1| ATP-dependent DNA helicase [Thermosipho africanus TCF52B] gi|217036935|gb|ACJ75457.1| ATP-dependent DNA helicase [Thermosipho africanus TCF52B] Length = 632 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 39/166 (23%) Query: 13 TIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 ID ++ EQ A + V A GSGKT ++ ++ L+ + PS +L +T T Sbjct: 1 MIDFKAELDDEQYEAVVNSKGKTLVIAGPGSGKTRVITYKIAHLISSGVKPSEILLVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 KAAA EM + +A+ + + L+ G+ Sbjct: 61 KAAAKEM-----------------------------------LQRAKLVSRSTLD---GI 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 T H C ++++ + +F I D E +K ++E A+ + Sbjct: 83 TAGTFHHICNLFLRKYGTIIGLKPNFTILDSEDAKDVMESARSQII 128 >gi|297571780|ref|YP_003697554.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595] gi|296932127|gb|ADH92935.1| UvrD/REP helicase [Arcanobacterium haemolyticum DSM 20595] Length = 1156 Score = 115 bits (289), Expect = 5e-24, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 7/153 (4%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77 T + + + ++ V A AGSGKT + R+ LL + A P+ +L LT T+ AA E Sbjct: 14 PTDEQAAVITSDHQATLVIAGAGSGKTATMANRIAWLLASGKAQPNHILGLTFTRKAAGE 73 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE-TPGGLKVQTI 136 ++ RV + I + S+ +T N D + ++ + + + T + T Sbjct: 74 LAERVNKKIREITRRGIYTPSSMLT-----DGNIGDGEEGKNQIASAVHDTLSRPTISTY 128 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 ++F I + + + E + +L+ Sbjct: 129 NSFASQIATSYAMLIGEDPGARLMSEAERYQLM 161 >gi|153000571|ref|YP_001366252.1| exodeoxyribonuclease V subunit beta [Shewanella baltica OS185] gi|151365189|gb|ABS08189.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS185] Length = 1273 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 17/184 (9%) Query: 10 HSETIDLISQTKSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHP 62 SE I L + A DP S + A+AG+GKT+ + LRLLL + A P Sbjct: 1 MSEQIQLNAAALHSAPQALDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGIAAP 60 Query: 63 ---STLLCLTHTKAAAAEMSHRVLEIIT-AWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118 +L +T T AA E+ R+ I A+ ++ + +S+ + A Sbjct: 61 LTCEQILVVTFTNAATEELRDRIRRRIQVAFKCFLGLTIADPFVQALYDNTPESERAIAL 120 Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI--TSHFAIADEEQSKKLIEEAKKST 176 L++ + TIH FC+ I+ E+++ S F + D E + A + Sbjct: 121 RRFDLALKSLDEAAIFTIHGFCQRILSDLAFESSLLFESDFTLDDSE----FLHHAVRDF 176 Query: 177 LASI 180 Sbjct: 177 WREA 180 >gi|326435120|gb|EGD80690.1| DNA and RNA helicase [Salpingoeca sp. ATCC 50818] Length = 1191 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 38/163 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 +D+ + + + V A GSGKT ++ RV LL+ + P ++ +T T Sbjct: 111 LDVTGLNEQQCEAVCSTAPALLVLAGPGSGKTRVITSRVAWLLVNDTCSPHGVVLVTFTN 170 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ E L Sbjct: 171 KAANEMRTRVETLVGR-------------------------------------EKAAALH 193 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + T H+ +++ + + S++ I D+ +++++E+ KS Sbjct: 194 MGTFHSIANKFLRKHAAKVGLPSNYTIIDQSDAQRVVEKLMKS 236 >gi|114319965|ref|YP_741648.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114226359|gb|ABI56158.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 1242 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 16/164 (9%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT + LRL+L + P +L +T T+AA E+ R+ Sbjct: 18 GSRLIEASAGTGKTFTIAALYLRLVLGHGEQRAGGGPLVPPQILVVTFTEAATRELRDRI 77 Query: 83 LEIITAWSHLSDEILSAE----ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 E ++ + + + ++ + + AR L E V TIH+ Sbjct: 78 RERLSQAAAAFRDPARYPDDPVLPALRAEYDEHERPAMARRL-ELAAEWMDESAVSTIHS 136 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 +C ++++ ++ S F E L+ EA + S + Sbjct: 137 WCYRMLREHAFDSG--SLFTQDLEADQTALLAEAVRDYWRSFLY 178 >gi|121603267|ref|YP_980596.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2] gi|120592236|gb|ABM35675.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2] Length = 709 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 38/151 (25%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 ++Q + V A AGSGKT ++ ++ RL+ P + +T T AAAEM R Sbjct: 17 AQQEAVNYLHGPCLVLAGAGSGKTRVITHKIGRLIQMGMKPEQIAAITFTNKAAAEMRER 76 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 +I + G+ + T HA Sbjct: 77 AKSLIGKSAK--------------------------------------GVLICTFHALGV 98 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 +++Q + F+I D + ++++A Sbjct: 99 RMLRQDGAALGLKPQFSILDSDDVTSILKDA 129 >gi|212635558|ref|YP_002312083.1| exodeoxyribonuclease V subunit beta [Shewanella piezotolerans WP3] gi|212557042|gb|ACJ29496.1| Exodeoxyribonuclease V, beta subunit [Shewanella piezotolerans WP3] Length = 1232 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 14/181 (7%) Query: 9 EHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---- 62 + SE D SQ T+ L S + A+AG+GKT+ + +RLLL + Sbjct: 13 KLSELTDGQSQFVTEPLNTLTLPFGGSRLIEASAGTGKTYTIAGLYVRLLLGHGTEQALS 72 Query: 63 -STLLCLTHTKAAAAEMSHRVLEIIT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 +L +T T AA E+ R+ + I A+ + E+ + +SD + AR Sbjct: 73 CEQILVVTFTNAATGELRDRIRKKIQLAYRCFIGLKVDDELISQLYNETRESDKALARKR 132 Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLA 178 L L++ + TIH FC+ I+ E+++ S F + D E + A + Sbjct: 133 LDLALKSLDEAAIFTIHGFCQRILADMAFESSLLFESEFTLDDSE----FLHHAVRDFWR 188 Query: 179 S 179 Sbjct: 189 E 189 >gi|187925846|ref|YP_001897488.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN] gi|187717040|gb|ACD18264.1| UvrD/REP helicase [Burkholderia phytofirmans PsJN] Length = 696 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 28/162 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ ++E + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +++ + + ++ L V Sbjct: 62 ALEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++Q + F+I D + +I+E ST Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQEQVGST 138 >gi|114766742|ref|ZP_01445680.1| ATP-dependent DNA helicase [Pelagibaca bermudensis HTCC2601] gi|114541061|gb|EAU44117.1| ATP-dependent DNA helicase [Roseovarius sp. HTCC2601] Length = 680 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 62/168 (36%), Gaps = 35/168 (20%) Query: 13 TIDLISQTKSEQL----LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 +D ++ + + + V A AGSGKT+ L RV LL+ A P +L + Sbjct: 6 YLDKLNDNQRAAVEFGVVRDAVAPPLLVIAGAGSGKTNTLAHRVAHLLVNGADPQRILLM 65 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T ++ AA E++ RV I + G+ ++ A Sbjct: 66 TFSRRAATELTRRVARI---------------TEQAMGRGVAAEALTWA----------- 99 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H I+++ L + F+I D E S L+ + + Sbjct: 100 -----GTFHGIGARILREHALAIGLHPEFSIHDREDSADLMNLCRNAL 142 >gi|91785713|ref|YP_560919.1| ATP-dependent DNA helicase Rep [Burkholderia xenovorans LB400] gi|91689667|gb|ABE32867.1| ATP-dependent DNA helicase Rep [Burkholderia xenovorans LB400] Length = 696 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 28/162 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ ++E + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +++ + + ++ L V Sbjct: 62 ALEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++Q + F+I D + +I+E ST Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQEQVGST 138 >gi|296157515|ref|ZP_06840350.1| UvrD/REP helicase [Burkholderia sp. Ch1-1] gi|295892287|gb|EFG72070.1| UvrD/REP helicase [Burkholderia sp. Ch1-1] Length = 696 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 61/162 (37%), Gaps = 28/162 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ ++E + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNPAQNEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +++ + + ++ L V Sbjct: 62 ALEMRERVGKLLEGKTLTTPGKEGRKVP-------------------------VNQLTVC 96 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++Q + F+I D + +I+E ST Sbjct: 97 TFHSLGVQILRQEAEHVGLKPQFSIMDSDDCFGMIQEQVGST 138 >gi|183602118|ref|ZP_02963486.1| conserved ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis HN019] gi|219683030|ref|YP_002469413.1| UvrD/REP helicase [Bifidobacterium animalis subsp. lactis AD011] gi|241191350|ref|YP_002968744.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196756|ref|YP_002970311.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218611|gb|EDT89254.1| conserved ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis HN019] gi|219620680|gb|ACL28837.1| UvrD/REP helicase [Bifidobacterium animalis subsp. lactis AD011] gi|240249742|gb|ACS46682.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251310|gb|ACS48249.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177477|gb|ADC84723.1| Putative ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis BB-12] gi|295794343|gb|ADG33878.1| ATP-dependent DNA helicase [Bifidobacterium animalis subsp. lactis V9] Length = 1378 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 64/161 (39%), Gaps = 22/161 (13%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 + ++++ +D + V A AGSGKT + +RV+ L+ P +L LT T AA+E+ Sbjct: 11 AEQQRIVDADANANVIVVAGAGSGKTFTMTERVIHLIHEGVPPEHILGLTFTNKAASELL 70 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV + + + ++ KP+ V+T AF Sbjct: 71 SRVSKAVLDDARERAREGGPHPARLAFMKPD----------------------VRTYDAF 108 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 ++I++Q+ L ++++I + I Sbjct: 109 FQSIVRQYGLLVGFDPQTQPLSVAGARQIIASVVGRHVDEI 149 >gi|91775555|ref|YP_545311.1| ATP-dependent DNA helicase Rep [Methylobacillus flagellatus KT] gi|91709542|gb|ABE49470.1| ATP-dependent DNA helicase Rep [Methylobacillus flagellatus KT] Length = 690 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 39/171 (22%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 I++++ +Q A V A AGSGKT ++ Q++ L+ P + +T T Sbjct: 21 INMLNSMNPQQREAVKYLDGPLLVLAGAGSGKTRVITQKISYLIEQCGYAPKEIAAITFT 80 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +++ GL Sbjct: 81 NKAAREMQERVGQLLQGT-------------------------------------NAKGL 103 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 + T H+ +++Q F+I D S K++ +A +T ++ Sbjct: 104 TIATFHSLGLQMLRQEAELLGYKPQFSILDSSDSFKILSDALATTDKQLLR 154 >gi|239905341|ref|YP_002952080.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1] gi|239795205|dbj|BAH74194.1| ATP-dependent DNA helicase [Desulfovibrio magneticus RS-1] Length = 739 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 85/211 (40%), Gaps = 40/211 (18%) Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D ++ QL A S V A AGSGKT +V R+ L+L P+++L LT T+ Sbjct: 1 MDCTNELNPAQLEAVSTTEGPVLVIAGAGSGKTRTIVYRLAHLVLKGVEPASILLLTFTR 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM +++A LL + G+ Sbjct: 61 KAAQEM-----------------------------------LTRAGLLLALGAQGISGVA 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 T HAF A ++++ A F D + ++ + K L D + K A Sbjct: 86 GGTFHAFAFAALRRYSEAAGFPGGFTCLDAADCEDILGQCKDR-LGLGKGDRSFPRKSAI 144 Query: 193 YEILEISNDEDIETLISDIISNRTALKLIFF 223 +L + ++++E + D+I+ R A L+ + Sbjct: 145 LGLLSKARNKELE--VGDVIA-REAFHLLPY 172 >gi|325108966|ref|YP_004270034.1| UvrD/REP helicase [Planctomyces brasiliensis DSM 5305] gi|324969234|gb|ADY60012.1| UvrD/REP helicase [Planctomyces brasiliensis DSM 5305] Length = 665 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 52/161 (32%), Gaps = 38/161 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L S S++ A V A AG+GKT ++ R+ L+ +L +T T AA Sbjct: 7 LESLNPSQREAAETREGPLLVLAGAGTGKTRVITTRMALLIGTGTQADRILSVTFTNKAA 66 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM+ R+ I+ + T Sbjct: 67 KEMAQRLQAILGRRKTKP--------------------------------------WIST 88 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 HA C I++Q S F I D + L + +S Sbjct: 89 FHALCVRILRQEIEALGYRSTFTIVDRGDQESLARDVLRSI 129 >gi|33152201|ref|NP_873554.1| exodeoxyribonuclease V, beta subunit [Haemophilus ducreyi 35000HP] gi|33148423|gb|AAP95943.1| exodeoxyribonuclease V, beta subunit [Haemophilus ducreyi 35000HP] Length = 1198 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 11/181 (6%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHP---STLLCLTHTKAAAAEMSHR 81 LA ++ + A+AG+GKT + LRLLL P +L +T TKAA E+ R Sbjct: 7 LALPLNGTSLIEASAGTGKTFTMANLYLRLLLGIGCQPLTVEEILVVTFTKAATEELRDR 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNK-----SDMSKARHLLITILETPGGLKVQTI 136 + I A + +I + + ++ ++ +A+ L + TI Sbjct: 67 IRRNIKACREFFCDYDPNQIDQNKDNFYSQLYERVDNLDEAKLRLRIAEREIDLASIFTI 126 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H+FC+ I+ QF ++ I F + L+++ + + + + Y L Sbjct: 127 HSFCQKILSQFAFDSGI--RFDNDWQTDESHLLQQLSEEIWREQFYPLSLQECEIIYNEL 184 Query: 197 E 197 E Sbjct: 185 E 185 >gi|317403517|gb|EFV84017.1| ATP-dependent DNA helicase [Achromobacter xylosoxidans C54] Length = 696 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 62/183 (33%), Gaps = 37/183 (20%) Query: 1 MIYHNSFQEHSETIDLISQTKSEQLLASD-------PTRSAWVSANAGSGKTHILVQRVL 53 M NS S D ++ Q A++ V A AGSGKT+ L RV Sbjct: 1 MSDQNSAHPSSRP-DPLADLNPAQREAAEFGVGGAGDDGPLLVIAGAGSGKTNTLAHRVA 59 Query: 54 RLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD 113 L+L A P +L LT ++ AA EM RV ++ +L Sbjct: 60 HLILNGADPQRMLLLTFSRRAAQEMERRVGSVLQRVMNLRGTQ----------------- 102 Query: 114 MSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + P T HA +++ ++ F I D ++ L+ + Sbjct: 103 ------------QAPSLPWAGTFHAIGARLLRDCAQRIGLSEAFTIHDRGDAEDLMGMVR 150 Query: 174 KST 176 Sbjct: 151 HEL 153 >gi|189485729|ref|YP_001956670.1| ATP-dependent UvrD family DNA helicase PcrA [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287688|dbj|BAG14209.1| ATP-dependent UvrD family DNA helicase PcrA [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 772 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 38/159 (23%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + S+ + A AG+GKT ++ R+ LL ++L +T T AA+E Sbjct: 8 NLNPSQAEAVLCTEGPLIIFAGAGTGKTRVITHRIAYLLSLGVVSQSVLAVTFTNKAASE 67 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ ++I + V T H Sbjct: 68 MKKRISDLIPGVGV--------------------------------------NVWVSTFH 89 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 +FC ++ ++ +F I D K ++++ K Sbjct: 90 SFCAHFLRAEASRISLNPYFLIYDFIDQKSVVKDCVKEL 128 >gi|146417360|ref|XP_001484649.1| hypothetical protein PGUG_02378 [Meyerozyma guilliermondii ATCC 6260] Length = 830 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 38/177 (21%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTH 70 E + +++ + + A +R V A G+GKT +LV RV LLL P ++ T Sbjct: 7 ELLSSLNENQRTAVTAPLNSR-ICVIAGPGTGKTKVLVSRVAHLLLHDQIPPQQIIVTTF 65 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 TK AA EM R+ ++ Sbjct: 66 TKKAANEMVLRLRLVLQDTDI-----------------------------------DVNR 90 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 L V T H+ C I++++ + F IADE+ S L+EE + + +++E+ Sbjct: 91 LMVGTFHSICYRIIKKYGHLIGLE-GFTIADEKDSIHLLEECLEKIGKNPQQNDDEK 146 >gi|271500543|ref|YP_003333568.1| exodeoxyribonuclease V subunit beta [Dickeya dadantii Ech586] gi|270344098|gb|ACZ76863.1| exodeoxyribonuclease V, beta subunit [Dickeya dadantii Ech586] Length = 1230 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 85/216 (39%), Gaps = 37/216 (17%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT + +RL+L + +P +L +T T AA E+ R+ Sbjct: 19 GSRLIEASAGTGKTFTIAMLYVRLVLGHGGEHAFSRPLNPPDILVVTFTDAATRELRDRI 78 Query: 83 LEIITAWSHL-----------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + + D+ + + +++ P++ AR L + E Sbjct: 79 RARLAQAAAYFQPNDKGGTAGEDDEVDPLLRELRADYPSEQWPDCARKLQLAA-EWMDEA 137 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN------ 185 V TIH++C ++ + ++ S F E +L+ E + + + Sbjct: 138 AVSTIHSWCNRMLGEHAFDSG--SLFNQTLETDQSELLLEVVRDYWRTFFFPLDARDVLE 195 Query: 186 --------EELKKAFYEILEISNDEDIETLISDIIS 213 E+ ++ +L+ +++ I+ L + I S Sbjct: 196 LRDSWAAPEDFYRSVTPLLDYADEIGIDDLPAQIFS 231 >gi|159040530|ref|YP_001539783.1| UvrD/REP helicase [Salinispora arenicola CNS-205] gi|157919365|gb|ABW00793.1| UvrD/REP helicase [Salinispora arenicola CNS-205] Length = 1062 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 67/207 (32%), Gaps = 39/207 (18%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +++ AS P + A G+GKT L R+ L N P L +T T+ AA E+ HR Sbjct: 517 QRVAASAPGGPLLIVAGPGTGKTRTLTHRIAYLCAELNVFPEHCLAITFTRRAAEELRHR 576 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + ++ + + V T H+ Sbjct: 577 LDGLLGPVAE--------------------------------------DVTVGTFHSVGL 598 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ A + F IAD+ EA A + L ++L + Sbjct: 599 QILRENREAAGLPVDFRIADDADRTAARAEAGDDHDAYLALLRKQDLVDLDELLTLPLAL 658 Query: 202 EDIETLISDIISNRTALKLIFFFFSYL 228 + ++D +R + + Sbjct: 659 LRADQRLADSYRDRWRWIFVDEYQDVD 685 >gi|311107647|ref|YP_003980500.1| UvrD/Rep helicase family protein 1 [Achromobacter xylosoxidans A8] gi|310762336|gb|ADP17785.1| UvrD/Rep helicase family protein 1 [Achromobacter xylosoxidans A8] Length = 707 Score = 114 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 37/180 (20%) Query: 5 NSFQEHSETIDLISQTKSEQLLASD--------PTRSAWVSANAGSGKTHILVQRVLRLL 56 ++ +E D ++ Q A++ V A AGSGKT+ L RV L+ Sbjct: 12 DTSSPSAERPDPLADLNPAQREAAEFGVAGAPGDDGPLLVIAGAGSGKTNTLAHRVAHLI 71 Query: 57 LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSK 116 L A P +L LT ++ AA EM RV ++ Sbjct: 72 LNGADPQRMLLLTFSRRAALEMERRVGSVLQRVMR------------------------- 106 Query: 117 ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L + P T HA +++ ++ F I D ++ L+ + Sbjct: 107 ----LRATQQAPSLPWAGTFHAIGARLLRDCAQRIGLSEAFTIHDRGDAEDLMGMVRHEL 162 >gi|197334387|ref|YP_002155339.1| exodeoxyribonuclease V, beta subunit [Vibrio fischeri MJ11] gi|197315877|gb|ACH65324.1| exodeoxyribonuclease V, beta subunit [Vibrio fischeri MJ11] Length = 1208 Score = 114 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 22/192 (11%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA AE+ R+ Sbjct: 22 LIEASAGTGKTFTIASLYLRLLLGHGDEGTRHQEELTVDRILVVTFTEAATAELRERIRA 81 Query: 85 IITAWSHLSDEILSAEITK-----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 I + K I + D A +L+ + + TIH F Sbjct: 82 KIHDARLAFARAVHNNDYKSSDPVIDPLLASIGDHKSATQILLNAERSMDEASIFTIHGF 141 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C+ ++ Q E+ + F KL+ + + + ++ Y+ Sbjct: 142 CQRMLTQNAFESG--AQFESEFVTDQAKLMHQVAADFWRRSFYHLPKMVAESVYDCWSSP 199 Query: 200 NDEDIETLISDI 211 + L+ D+ Sbjct: 200 S-----ALLGDM 206 >gi|189183408|ref|YP_001937193.1| DNA helicase II [Orientia tsutsugamushi str. Ikeda] gi|189180179|dbj|BAG39959.1| DNA helicase II [Orientia tsutsugamushi str. Ikeda] Length = 716 Score = 114 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 40/156 (25%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L+ ++ V A AG+GKT ++ R+ ++ A P +L +T T A Sbjct: 5 LLDLNPEQREAVITTNGPLLVLAGAGTGKTRVITYRIAYIIDQFMALPEEILAVTFTNKA 64 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ E I G+ + Sbjct: 65 ATEMQSRIAE---------------------------------------ITNNTTGIYIG 85 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T HA I++ +TS F+I D+ + ++I+ Sbjct: 86 TFHAIATKILKAHAELVGLTSSFSIIDQSEQVRVIK 121 >gi|164658916|ref|XP_001730583.1| hypothetical protein MGL_2379 [Malassezia globosa CBS 7966] gi|159104479|gb|EDP43369.1| hypothetical protein MGL_2379 [Malassezia globosa CBS 7966] Length = 876 Score = 114 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 44/176 (25%) Query: 16 LISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLL-----LANAHPSTLLCL 68 ++S Q A SD +R + A GSGKT +L RV L+ PS + + Sbjct: 2 MLSGLSDAQRTAVTSDASRPLQILAGPGSGKTRVLTTRVAWLVQGAPDRKPIPPSQCVVV 61 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AAAEM R+ +I + R L++ Sbjct: 62 TFTNKAAAEMRSRLQALIGE--------------------------ERTRMLIL------ 89 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 T HA C ++++ ++ F IAD + +K++I++ A + D+ Sbjct: 90 -----GTFHATCARFLRRWGERIGLSRQFTIADADDAKRIIKDICADFDADMASDD 140 >gi|148243810|ref|YP_001220049.1| UvrD/REP helicase [Acidiphilium cryptum JF-5] gi|146400373|gb|ABQ28907.1| ATP-dependent DNA helicase, Rep family [Acidiphilium cryptum JF-5] Length = 717 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 54/171 (31%), Gaps = 39/171 (22%) Query: 16 LISQTKSEQLLA----------SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 + + EQ A + V A AGSGKT L RV L++ P + Sbjct: 25 YLDKLNVEQRSAVVHGIDSATTTHIGAPLLVIAGAGSGKTSTLAHRVAHLIVNGVDPRRI 84 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L ++ ++ AAAEM R I ++ +T Sbjct: 85 LLMSFSRRAAAEMIRRAERISVQAMGGKTGAMTDALT----------------------- 121 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++ + + + F I D E S L+ + Sbjct: 122 ------WAGTFHGIGARLLRDYAEQIGLDPAFTIHDREDSADLMNLVRHEL 166 >gi|319934767|ref|ZP_08009212.1| hypothetical protein HMPREF9488_00043 [Coprobacillus sp. 29_1] gi|319810144|gb|EFW06506.1| hypothetical protein HMPREF9488_00043 [Coprobacillus sp. 29_1] Length = 1203 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 71/195 (36%), Gaps = 23/195 (11%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + S VSA AGSGKT ILV R++ LL L LT T+AA Sbjct: 1 MPFNEGQLKAIQQRDASILVSAPAGSGKTKILVSRIVELLKEGYEIFDFLVLTFTQAAGN 60 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ E + D++ HL IL P + Sbjct: 61 EMKQRLSEELHQLVSTD------------------IDLTLKEHLEKQILNLPH-AYMTNF 101 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H FC ++ ++ N+ F I + + + L +L+ E +K+ Sbjct: 102 HGFCNLLLMKYGYLVNVMPGFEI--NSDPSMIKKAVLQECLEKWILE--EHIKEFLSLYF 157 Query: 197 EISNDEDIETLISDI 211 + + +L+ I Sbjct: 158 PGYSLDAFSSLLLSI 172 >gi|300726045|ref|ZP_07059503.1| putative UvrD/REP helicase domain protein [Prevotella bryantii B14] gi|299776652|gb|EFI73204.1| putative UvrD/REP helicase domain protein [Prevotella bryantii B14] Length = 1115 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 69/156 (44%), Gaps = 4/156 (2%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEI 85 + P A+AGSGKT L + ++L++ + +L +T T A EM R+L Sbjct: 2 INHPKPLTVYKASAGSGKTFTLTKEYIKLVIKDPTCYRNILAVTFTNKATEEMKMRILST 61 Query: 86 I-TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + W L D + + + + ++A L ++ +V+TI F ++++ Sbjct: 62 LYGIWKQLPDSVDYLKQITKEIDVSPELASAQAGKALSLLVHNYNYFRVETIDTFFQSVL 121 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 + E ++T++ I E ++ + A + ++ Sbjct: 122 RNLARELDLTANLRI--ELNDYQVEDMAVDELIENL 155 >gi|163750873|ref|ZP_02158107.1| exodeoxyribonuclease V, beta subunit [Shewanella benthica KT99] gi|161329431|gb|EDQ00426.1| exodeoxyribonuclease V, beta subunit [Shewanella benthica KT99] Length = 1249 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 94/235 (40%), Gaps = 29/235 (12%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHP---STLLCLTHTKAAAAEMSHRVLEI 85 S + A+AG+GKT+ + +RLLL + P +L +T T AA E+ R+ Sbjct: 31 GGSRLIEASAGTGKTYTIAGLYVRLLLGHGIVKPLTCQQILVVTFTNAATGELRDRIRNK 90 Query: 86 IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I A+ H E+ +S+ A L L++ + TIH FC+ I+ Sbjct: 91 IQLAYRHFIGIDTGDELLASLHSATPESERPLALKRLDLALKSLDEASIFTIHGFCQRIL 150 Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKS-------TLASIMLD---NNEELKKAF 192 E+++ S F + D E + + + LA I+ + + L K Sbjct: 151 ADMAFESSLLFESEFTLDDSEFLHHAVRDFWREHCYPLPGCLAEIIQKKFADPDALSKQL 210 Query: 193 YEILEIS------NDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 +L S ED L + + + LKLI + R+ IE L S+ Sbjct: 211 KPLLGASQANAHPQPEDFNKLQGTLTQSMSRLKLI-----WPREREAIETLLHSL 260 >gi|325959374|ref|YP_004290840.1| UvrD/REP helicase [Methanobacterium sp. AL-21] gi|325330806|gb|ADZ09868.1| UvrD/REP helicase [Methanobacterium sp. AL-21] Length = 933 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 39/152 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78 T +++ A + A G+GKT +LV+RV L+ PS +L +T T AA E+ Sbjct: 12 TSAQREAAKHFEGPLLIVAGPGAGKTRVLVERVAYLVKKKKVDPSNILVITFTVKAAEEL 71 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + +++ TIH+ Sbjct: 72 KARLSHCVGQEIV--------------------------------------SMQISTIHS 93 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 FC I++ + + + F + D E + Sbjct: 94 FCHEILRDYSDYHELGATFDVLDSEMQLMFMR 125 >gi|296121490|ref|YP_003629268.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776] gi|296013830|gb|ADG67069.1| UvrD/REP helicase [Planctomyces limnophilus DSM 3776] Length = 680 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 51/162 (31%), Gaps = 37/162 (22%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D+ + +Q V A AG+GKT ++ R+ L+ A P +L +T T Sbjct: 1 MLDISHLNRPQQEAVRTHRGPLLVLAGAGTGKTRVITYRMADLIAAGVDPERILSVTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R ++ Sbjct: 61 KAAREMLDRTSLLLGRTMKKRP-------------------------------------T 83 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + T H++C I++Q F I D + +A + Sbjct: 84 ISTFHSWCVGILRQEIDSLGYPKQFVIYDRGDQESAARKALQ 125 >gi|148263393|ref|YP_001230099.1| UvrD/REP helicase [Geobacter uraniireducens Rf4] gi|146396893|gb|ABQ25526.1| UvrD/REP helicase [Geobacter uraniireducens Rf4] Length = 678 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 39/162 (24%) Query: 17 ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTKAA 74 +S +QL A + V A AGSGKT ++ R+ LLL P+ +L +T T A Sbjct: 4 LSTLNPQQLAAVKHTEGALLVLAGAGSGKTGVITYRIAHLLLNKKVPAMNILAVTFTNKA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ + G+ + Sbjct: 64 AKEMRERVDSLVGRQACK-------------------------------------GIIIS 86 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I+++ +F+I L+++ + Sbjct: 87 TFHSLGVRILRRNIELLGYKRNFSIYSTSDQIGLVKQIMREV 128 >gi|83319825|ref|YP_424677.1| ATP-dependent DNA helicase pcrA [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|90110084|sp|P45612|UVRD_MYCCT RecName: Full=Probable DNA helicase II homolog gi|83283711|gb|ABC01643.1| ATP-dependent DNA helicase pcrA [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 722 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 81/218 (37%), Gaps = 40/218 (18%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVL 83 + + + A AGSGKT ++ ++ L+ N PS +L +T T AA EM RVL Sbjct: 16 AAVLNIDKPVRIIAGAGSGKTRVITTKIAYLIEKQNIDPSRILAVTFTNKAAKEMKERVL 75 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 +I + + T H++C + Sbjct: 76 QITN--------------------------------------NSFKSPFISTFHSWCSKV 97 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ + F I D + K++I+ A K + + ++ + K ++ +E Sbjct: 98 LRIDGKHIGLEDKFLIIDSDDQKRIIKSALKESNIELSENDKKTFDKKILYKIKEWKEEL 157 Query: 204 IETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 ++ I++ + L+ F L++ +++ + Sbjct: 158 VDP-SEAILNATSTLEKNFAVIYRLYQNTLLKNNSLDF 194 >gi|307320004|ref|ZP_07599426.1| UvrD/REP helicase [Sinorhizobium meliloti AK83] gi|306894381|gb|EFN25145.1| UvrD/REP helicase [Sinorhizobium meliloti AK83] Length = 689 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 38/169 (22%) Query: 17 ISQTKSEQLLASDPT---------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 + + Q A + + A AGSGKT+ L RV L++ A P +L Sbjct: 7 LEKLNERQRCAVEYGIGAEEGAQAGPLLIIAGAGSGKTNTLAHRVAHLIVNGADPRRILL 66 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T ++ AAAEMS RV I S +++ ++ Sbjct: 67 MTFSRRAAAEMSRRVERICAQVLGRSSGMMTDALS------------------------- 101 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++ + + + + F I D E S LI + Sbjct: 102 ----WAGTFHGIGARLLRIYAEQIGLNAEFTIHDREDSADLINLIRHEL 146 >gi|225620718|ref|YP_002721976.1| ATP-dependent DNA helicase [Brachyspira hyodysenteriae WA1] gi|225215538|gb|ACN84272.1| ATP-dependent DNA helicase [Brachyspira hyodysenteriae WA1] Length = 659 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 72/211 (34%), Gaps = 48/211 (22%) Query: 14 IDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D++ Q + A AGSGKT ++ +++ L+ P ++ +T T Sbjct: 1 MDILENVSEVQREGILHTGSPLLLLAGAGSGKTLVITRKIAYLINELEVAPENIMAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ P L Sbjct: 61 NKAAHEMKERVCSLLPDIK-------------------------------------PSRL 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 ++T H+ C I+++ S+F I DE +I+ K + +++ Sbjct: 84 FIRTFHSACLRILKENAHFLGYKSNFLILDEGDKASVIKRIMKE--EEVPKSIGQKIITR 141 Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIF 222 F ++ D+ I+ +R + ++ Sbjct: 142 FISNVKNGMDDG-------IVFDRDIFENVY 165 >gi|113869553|ref|YP_728042.1| superfamily I DNA/RNA helicase [Ralstonia eutropha H16] gi|113528329|emb|CAJ94674.1| Superfamily I DNA and RNA helicase [Ralstonia eutropha H16] Length = 726 Score = 114 bits (287), Expect = 9e-24, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 59/167 (35%), Gaps = 32/167 (19%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPST 64 + ++ +SE + D V A AGSGKT ++ Q++ L+ P Sbjct: 22 ASNRIPRMTHGLNSAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEDKGFEPRH 79 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 + +T T AA EM R+ +++ + + + + Sbjct: 80 IAAVTFTNKAAKEMQERIGKLMEGKTTREGKRIPLK------------------------ 115 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 L V T H+ I++ + F+I D + LI+E Sbjct: 116 -----QLTVCTFHSLGVQILRMEAEHVGLKPQFSIMDSDDCFGLIQE 157 >gi|269115227|ref|YP_003302990.1| ATP-dependent helicase [Mycoplasma hominis] gi|268322852|emb|CAX37587.1| ATP-dependent helicase [Mycoplasma hominis ATCC 23114] Length = 745 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 57/167 (34%), Gaps = 40/167 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 IDL + ++ + A AGSGKT +L ++ L+ P+ +L LT + Sbjct: 1 MIDLKDLNEQQKSAVIYNEGPLRIIAGAGSGKTRVLTYKIAYLIQKLGVLPNRILALTFS 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ + P L Sbjct: 61 NKAANEMKQRVFNLLAE-------------------------------------DNPSNL 83 Query: 132 K--VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T HA C I+++ + F I DE K++++ Sbjct: 84 SPYISTFHAMCAKILRKEIYNFGYENDFQILDELDQKEILKIVYSEL 130 >gi|307300863|ref|ZP_07580638.1| UvrD/REP helicase [Sinorhizobium meliloti BL225C] gi|306904397|gb|EFN34982.1| UvrD/REP helicase [Sinorhizobium meliloti BL225C] Length = 689 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 38/169 (22%) Query: 17 ISQTKSEQLLASDPT---------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 + + Q A + + A AGSGKT+ L RV L++ A P +L Sbjct: 7 LEKLNERQRCAVEYGIGAEEGAQAGPLLIIAGAGSGKTNTLAHRVAHLIVNGADPRRILL 66 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T ++ AAAEMS RV I S +++ ++ Sbjct: 67 MTFSRRAAAEMSRRVERICAQVLGRSSGMMTDALS------------------------- 101 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++ + + + + F I D E S LI + Sbjct: 102 ----WAGTFHGIGARLLRIYAEQIGLNAEFTIHDREDSADLINLIRHEL 146 >gi|78188740|ref|YP_379078.1| exodeoxyribonuclease V, beta subunit [Chlorobium chlorochromatii CaD3] gi|78170939|gb|ABB28035.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Chlorobium chlorochromatii CaD3] Length = 1207 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 74/185 (40%), Gaps = 15/185 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMS----HRVLEIITAW 89 + A+AG+GKT+ + +RLLL P +L +T+T+AA E+ R+ E++ + Sbjct: 18 LIEASAGTGKTYAIASLYVRLLLEKQLLPEQILVVTYTEAATQELRGRIRSRIREVLEVF 77 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + + Q + + +AR L+ L + TIH FC ++Q+ Sbjct: 78 EGAATSDAIVQRLYDQALEQGDDMVERARMALVQALALFDTAAIFTIHGFCLRVLQEHAF 137 Query: 150 EANITSHFAIADE---EQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 E+ ++ D + L+ E + + L Y + + E Sbjct: 138 ESG-----SLYDTTLVTDQRALLLEIVEDFWRTHFFGEASPLLA--YTLQCGGSPESFLA 190 Query: 207 LISDI 211 L+ + Sbjct: 191 LLQKL 195 >gi|307298415|ref|ZP_07578218.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915580|gb|EFN45964.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2] Length = 969 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 78/213 (36%), Gaps = 36/213 (16%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRL------LLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 + +V+A+AG+GKT LV+ + + + ++ +T T AA EM RV+ Sbjct: 2 NKDIFVTASAGTGKTFSLVKEYVGVFDRSFRIGERLDVHNVVAITFTNKAAREMKDRVIT 61 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I +I P + + TIH+FCE I+ Sbjct: 62 EID--------------HRIASGHPGS---------WKPLRNKMSYAWISTIHSFCERIL 98 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204 ++ L A I F I + L E+ ++ ++N E + ++ + D+ Sbjct: 99 RESALFAGIDPGFQILSGMRRATLEEKVVRT-----YFEDNLESLEPLIQLTGL--DKAF 151 Query: 205 ETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 + I S R +L L L II Sbjct: 152 RIVKEAISSKRHSLALNPSPVGSLLGDSIISDD 184 >gi|327399219|ref|YP_004340088.1| UvrD/REP helicase [Hippea maritima DSM 10411] gi|327181848|gb|AEA34029.1| UvrD/REP helicase [Hippea maritima DSM 10411] Length = 667 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 70/186 (37%), Gaps = 51/186 (27%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q+ + ID ++ + + +L + + + + A AGSGKT L ++ +L A P +L Sbjct: 2 QQKNYIIDELNPQQRQAVL--ENSCNLLILAGAGSGKTKTLTHKIAFILNEGLAKPYQIL 59 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 LT T AA EM R+ ++I + Sbjct: 60 ALTFTNKAAGEMKERIGKLIGS-------------------------------------- 81 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + + T H+ I+++ I D + + LI+E L + +D+ + Sbjct: 82 QASDMWIGTFHSIALKILRKEGFR------PTIYDSKDQENLIKE----ILKKLNIDSKK 131 Query: 187 ELKKAF 192 +AF Sbjct: 132 YTPRAF 137 >gi|16263702|ref|NP_436495.1| UvrD2 DNA helicase [Sinorhizobium meliloti 1021] gi|14524418|gb|AAK65907.1| UvrD2 DNA helicase [Sinorhizobium meliloti 1021] Length = 689 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 38/169 (22%) Query: 17 ISQTKSEQLLASDPT---------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLC 67 + + Q A + + A AGSGKT+ L RV L++ A P +L Sbjct: 7 LEKLNERQRCAVEYGIGAEEGAQAGPLLIIAGAGSGKTNTLAHRVAHLIVNGADPRRILL 66 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T ++ AAAEMS RV I S +++ ++ Sbjct: 67 MTFSRRAAAEMSRRVERICAQVLGRSSGMMTDALS------------------------- 101 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++ + + + + F I D E S LI + Sbjct: 102 ----WAGTFHGIGARLLRIYAEQIGLNAEFTIHDREDSADLINLIRHEL 146 >gi|320535504|ref|ZP_08035607.1| UvrD/REP helicase [Treponema phagedenis F0421] gi|320147643|gb|EFW39156.1| UvrD/REP helicase [Treponema phagedenis F0421] Length = 1138 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 73/197 (37%), Gaps = 47/197 (23%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKA 73 D I Q A+ +A +SA AGSGKT +L R + L++ P ++ LT TK Sbjct: 3 DFIESLNQNQKAAALIDVNAVISAGAGSGKTRVLTARYIHLVINKKIPIEKIVALTFTKK 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM R+ + + + + ++ Sbjct: 63 AAAEMYQRIYRELLTCDSPEAK---------------------------QAINSFHLARI 95 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TI +F A+ + I+ F+I ++ + L+ E + A Sbjct: 96 MTIDSFSLAVARTGCKNFGISPDFSI--DKNAGDLLAE-----------------QIALD 136 Query: 194 EILEISNDEDIETLISD 210 L+ N++ ++T + + Sbjct: 137 FFLKHRNNKSLQTFMGE 153 >gi|309389723|gb|ADO77603.1| UvrD/REP helicase [Halanaerobium praevalens DSM 2228] Length = 1051 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 46/193 (23%), Positives = 84/193 (43%), Gaps = 13/193 (6%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT+ L L LL S ++ +T TK A AE+ +R+L+ + A S Sbjct: 4 VIKASAGTGKTYRLSLEYLAALLKGIDFSEIIVMTFTKKATAEIKNRILKHLRALILGSP 63 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 E + + K ++ + + ++ +K+ TI AF I + I Sbjct: 64 EKEDIIAALAEIQPELKVEVEQLEKIYKKMILNDEDIKIYTIDAFINQIFSR-----GIA 118 Query: 155 S-----HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209 ++ I D++Q++K+IEE K L + ++F E N + I Sbjct: 119 PFLEIYNYQIIDQKQNEKIIEELLKKILNK---QKYYQKLESFLEANTARNLDPYLEFIQ 175 Query: 210 DIISNRTALKLIF 222 +I++N L+ Sbjct: 176 EIVNNAWKFMLLE 188 >gi|301062532|ref|ZP_07203175.1| conserved hypothetical protein TIGR00375 [delta proteobacterium NaphS2] gi|300443389|gb|EFK07511.1| conserved hypothetical protein TIGR00375 [delta proteobacterium NaphS2] Length = 1107 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 73/207 (35%), Gaps = 48/207 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ + ++ + A G+GKT L R+ LL A +L LT T Sbjct: 486 ILDPLN--REQRRAVIHGHGHLLIVAGPGTGKTMTLTHRIAYLLNAGPTGGGNILALTFT 543 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ + S A+ + Sbjct: 544 NKAAREMKERLFRLEGHES--------------------------AKTVF---------- 567 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V T H FC +++ ++ F++ E + L A+ + L + N + + Sbjct: 568 -VSTFHGFCLNVLRSDGHFLDLPDPFSLCSETDTYIL---AEGAVLEAANDKNRKNATRR 623 Query: 192 FYEI-----LEISNDEDIETLISDIIS 213 F + L ++++ ++ + D+ S Sbjct: 624 FLKNLPQFKLNSISNKESDSALDDLFS 650 >gi|85374356|ref|YP_458418.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594] gi|84787439|gb|ABC63621.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594] Length = 776 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 63/183 (34%), Gaps = 42/183 (22%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81 ++ + A AG+GKT L R+ L+ A PS +LC+T T AA EM R Sbjct: 35 QREAVLTSEGPVLMLAGAGTGKTAALTARLAHLIATRKAWPSEILCVTFTNKAAREMRSR 94 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + I G + T H+ C Sbjct: 95 VGQHIGDAVE-------------------------------------GMPWLGTFHSICA 117 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 ++++ + S++ I D + +L+++ + LD + +++ + Sbjct: 118 RMLRRHAELVKLQSNYTIIDTDDQLRLLKQ----LIQQNDLDEKRWPARQLAGLIDRWKN 173 Query: 202 EDI 204 + Sbjct: 174 RGL 176 >gi|298505014|gb|ADI83737.1| ATP-dependent helicase, UvrD superfamily [Geobacter sulfurreducens KN400] Length = 680 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 59/175 (33%), Gaps = 38/175 (21%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71 +DL + ++ + V A AGSGKT ++ R+ L+L P ++L +T T Sbjct: 1 MLDLSTLNPPQREAVNCTEGPLLVLAGAGSGKTRVITCRIGHLVLHRKVAPESILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV E++ G+ Sbjct: 61 NKAAGEMKERVRELVGQGRTK-------------------------------------GM 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 V T H+ I+++ +F I L+ +A + + + E Sbjct: 84 IVSTFHSLGVRILRRDIERLGYKRNFGIYTTSDQLGLVRQALREVSDDVRKADAE 138 >gi|258545084|ref|ZP_05705318.1| UvrD/REP helicase [Cardiobacterium hominis ATCC 15826] gi|258519661|gb|EEV88520.1| UvrD/REP helicase [Cardiobacterium hominis ATCC 15826] Length = 1287 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 81/211 (38%), Gaps = 36/211 (17%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A + A+AG+GKT L +LRLL+ P ++ T T+ AAAEM RV + + A Sbjct: 19 ALIEASAGTGKTWTLTGIILRLLIEGGYPPREIIATTFTRKAAAEMQQRVHKRLHALREN 78 Query: 93 SDEILSAEITKIQGKKPNKSDMSK-------------ARHLLITIL-------------- 125 I + + + + ++ RHL++ + Sbjct: 79 LKAIAARYLAEETVLNDDDGLATRLDDIIGGSGGDLINRHLILNAVAKHGLDGLIAIFSR 138 Query: 126 -----ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 L + TI + C+ + +F LE I + + +EE TL + Sbjct: 139 VESLQARLDELFIGTIDSLCQRWLAEFALETGNDERLQINENSPA---LEETIHDTLRRL 195 Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDI 211 + +N++ + F ++L D + ++ Sbjct: 196 LHENHQHDPETFAQMLADGAYHDSDAYLAAA 226 >gi|253584027|ref|ZP_04861225.1| ATP-dependent nuclease subunit A [Fusobacterium varium ATCC 27725] gi|251834599|gb|EES63162.1| ATP-dependent nuclease subunit A [Fusobacterium varium ATCC 27725] Length = 1036 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 44/192 (22%), Positives = 92/192 (47%), Gaps = 11/192 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT+ L + L +L +T TK A AE+ R+L+ + + + Sbjct: 18 LVLKASAGTGKTYRLSLEYVGALCRGTDFKDILVMTFTKKATAEIKERILKFLKELAENA 77 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF-PLEAN 152 + S + + + + K + +++ LKV TI AF I ++ Sbjct: 78 KDGESIKENLKKIYPDMEFNQQKISAVYQDLIQNRDKLKVYTIDAFTNLIFKKAIAPYLK 137 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE---TLIS 209 I + I D+++++K++ + + +N+E +AF LE ++++D+E TLI Sbjct: 138 I-YSYEIIDDDENRKILIKTFQKIF------DNKEDFRAFKGFLEDNSEKDMENYLTLIK 190 Query: 210 DIISNRTALKLI 221 +I++ R + ++ Sbjct: 191 NILNERWKVIVL 202 >gi|332179303|gb|AEE14992.1| UvrD/REP helicase [Thermodesulfobium narugense DSM 14796] Length = 610 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 80/211 (37%), Gaps = 56/211 (26%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 ++ + ++ +R+ + A AG+GKT +L R RL+ N + L LT TK AA Sbjct: 3 LNLNEDQKRAVYSDSRALLIVAGAGTGKTRVLTTRAARLIKENPD-ARYLLLTFTKKAAR 61 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM+ RV E+I +T L T Sbjct: 62 EMTTRVRELIEE-------------------------------------DTKNRLYSGTF 84 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST------------------LA 178 H+FC I+++ +T+ F I DE S L+++ L Sbjct: 85 HSFCSNIIRRRSERVGLTNDFVIIDESDSLDLMKKVFSRIYSKEKIDSLIFKPKDILSLY 144 Query: 179 SIMLDNNEELKKAFYEILEISNDEDIETLIS 209 S +NN++ + + N EDI+ +IS Sbjct: 145 SYARNNNQDFIEIVQRKYKYVNFEDIKKIIS 175 >gi|123968742|ref|YP_001009600.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. AS9601] gi|123198852|gb|ABM70493.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str. AS9601] Length = 1208 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 81/197 (41%), Gaps = 10/197 (5%) Query: 35 WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 V A+AG+GK+ L VLR +L P +L L+ TK +E+ ++L Sbjct: 14 LVEASAGTGKSFTLAHIVLRNVLEKKVKPDEILLLSFTKNTCSELRDKILSRFLNLKLYL 73 Query: 94 DEILSAEI-TKIQGKKPNKSDMSKARHLLIT----ILETPGGLKVQTIHAFCEAIMQQFP 148 +I ++ N D K++ +I+ + LKV T HAFC I+ ++ Sbjct: 74 QSYKECKIDNTLKDWYLNFKDKDKSKEKIISEIDNFINQFYKLKVTTFHAFCNNIIDEYS 133 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY--EILEISNDEDIET 206 +E +T I + + L ++ + L+ N EL A Y +I ++ Sbjct: 134 IEIGLTQDPYIENNIDN--LYKDVIDNLWIDDFLNLNHELISAVYKKKISSRFGSRINKS 191 Query: 207 LISDIISNRTALKLIFF 223 +I+ N + F Sbjct: 192 FFVEILKNIDQENIYKF 208 >gi|167523216|ref|XP_001745945.1| hypothetical protein [Monosiga brevicollis MX1] gi|163775746|gb|EDQ89369.1| predicted protein [Monosiga brevicollis MX1] Length = 654 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 64/173 (36%), Gaps = 26/173 (15%) Query: 16 LISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 L+ +EQ LA + V A GSGKT ++ +R L+ PS ++ +T T+ A Sbjct: 17 LLKGLNAEQRLAVTAGEGATVVVAGPGSGKTRVITRRAAWLIEHGVAPSEVVLMTFTRKA 76 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ +++ S + + G + Sbjct: 77 AREMRERLDQLLAQSGAASGAAAAGQ-------------------------HRAGQIMAG 111 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 T H+ ++++ N++ +F D E +++ + K + E Sbjct: 112 TFHSLALRFLRRYSHLLNLSQNFTQIDTESRNRILRDFIKECKKAAPEGEESE 164 >gi|94500333|ref|ZP_01306866.1| exodeoxyribonuclease V beta chain [Oceanobacter sp. RED65] gi|94427632|gb|EAT12609.1| exodeoxyribonuclease V beta chain [Oceanobacter sp. RED65] Length = 1184 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 87/220 (39%), Gaps = 27/220 (12%) Query: 35 WVSANAGSGKTHILVQRVLRLLLAN----AHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + A+AG+GKT + LRL+L + P +L +T TKAA E+ R+ + Sbjct: 18 LIEASAGTGKTFTIAALYLRLVLGHGCNPISPENILVVTFTKAATEELRGRIRNRLRQAY 77 Query: 91 HL---SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 + DE L + + + + S + + L ++ + TIH F + ++ Q+ Sbjct: 78 NAIQTQDESLDPFVFSLLKELDHTSALER----LKDAVQIMDIAAIYTIHGFAQKVLSQY 133 Query: 148 PLEANITSHFAIADEEQSKKL-------------IEEAKKSTLASIMLDNNEELKKAFYE 194 +E+++ F + ++Q ++ + EA+ + + L + Sbjct: 134 SVESHVDDEFELILDQQEIEMTAVNDVWRKFVYPLSEAELDIVLDAW-GSPSVLLRDVST 192 Query: 195 ILEISNDEDIETL--ISDIISNRTALKLIFFFFSYLWRRK 232 ++ + + + DI K F F W+ + Sbjct: 193 LVRRDVEFKDSNIKNLQDIDVAHKRFKDAFDKFCQDWQDQ 232 >gi|302338886|ref|YP_003804092.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293] gi|301636071|gb|ADK81498.1| UvrD/REP helicase [Spirochaeta smaragdinae DSM 11293] Length = 670 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 39/163 (23%) Query: 13 TIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 IDL + EQ + AS + A AGSGKT ++ R+ +L S++L LT T Sbjct: 2 AIDLAKELNKEQFIAASTIDGPLLIIAGAGSGKTRMITFRIAHMLEEGIPQSSILALTFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EMS R+ + L Sbjct: 62 NKAAREMSDRIRSLTGK--------------------------------------RLSNL 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 V T HAF ++++ + S+F+I D+ LI+E+ + Sbjct: 84 TVSTFHAFGVKVLRKSIEYLDYKSNFSIYDQVDKTALIKESAR 126 >gi|304384333|ref|ZP_07366744.1| ATP-dependent helicase PcrA [Prevotella marshii DSM 16973] gi|304334649|gb|EFM00931.1| ATP-dependent helicase PcrA [Prevotella marshii DSM 16973] Length = 789 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 57/161 (35%), Gaps = 37/161 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L + S++ + V A AGSGKT +L ++ LL P +L LT T AA Sbjct: 6 LETLNDSQRRAVEHIDGPSIVIAGAGSGKTRVLTYKIAHLLNNGFEPWHILALTFTNKAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ +++ M +AR+L + T Sbjct: 66 TEMKTRIGHLVS--------------------------MERARYL-----------NMGT 88 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ I++ + I DE S+ L + K Sbjct: 89 FHSVFSHILRTEAERIGFGKQYTIYDENDSRSLCKVIIKEM 129 >gi|167856609|ref|ZP_02479309.1| exodeoxyribonuclease V beta chain [Haemophilus parasuis 29755] gi|167852265|gb|EDS23579.1| exodeoxyribonuclease V beta chain [Haemophilus parasuis 29755] Length = 1195 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 14/184 (7%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEI 85 +S+ + A+AG+GKT+ + LRL+L P +L +T TKAA E+ R+ E Sbjct: 12 NQSSLIEASAGTGKTYTMANLYLRLILGVRCPSPLTVEQILVVTFTKAATQELRDRIREK 71 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-------GGLKVQTIHA 138 + + S E + + + + L L + TI + Sbjct: 72 LVNVGKWFRDPSSKEAQEALQEPFLAELYQEVQPRLNECLLRLKIAEREIDLASIFTIDS 131 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC+ ++ QF + I F I +L+ + T + A E L+ Sbjct: 132 FCQKMLFQFAFSSGI--RFDIDLLTNESELLNRLSEETWRELFYPMGLAETVAVAEELKT 189 Query: 199 SNDE 202 +D Sbjct: 190 PSDA 193 >gi|300088001|ref|YP_003758523.1| UvrD/REP helicase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527734|gb|ADJ26202.1| UvrD/REP helicase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 747 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 39/162 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L +++ + A GSGKT ++ R+ L+ P ++ +T T A Sbjct: 4 LADLNTAQRQAVEAIEGPVLIVAGPGSGKTRVITYRIAYLIKEVGIAPHRIMAVTFTNKA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ + + Sbjct: 64 AREMKERLEKLAPGSVK--------------------------------------DITMG 85 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA C I+++ I F I D + +KL++ + + Sbjct: 86 TFHAICAGILRKEGQAIGIAREFVIFDADDQEKLLKRSAEEI 127 >gi|260429772|ref|ZP_05783748.1| UvrD/REP helicase subfamily protein [Citreicella sp. SE45] gi|260419255|gb|EEX12509.1| UvrD/REP helicase subfamily protein [Citreicella sp. SE45] Length = 680 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 61/168 (36%), Gaps = 35/168 (20%) Query: 13 TIDLISQTKSEQLL----ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 +D ++ + + A V A AGSGKT L RV LL+ A P +L + Sbjct: 6 YLDTLNDNQRAAVEFGVGAEGLPPPLLVIAGAGSGKTMTLAHRVAHLLVNGADPQRILLM 65 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T ++ AA E++ RV I K GK +S A Sbjct: 66 TFSRRAATELTRRVERI---------------TAKAMGKGVVAEALSWA----------- 99 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA I+++ L + F+I D E S L+ + Sbjct: 100 -----GTFHAIGARILREHALSIGLHPDFSIHDREDSADLMNLCRNGL 142 >gi|317478934|ref|ZP_07938081.1| UvrD/REP helicase [Bacteroides sp. 4_1_36] gi|316904911|gb|EFV26718.1| UvrD/REP helicase [Bacteroides sp. 4_1_36] Length = 1099 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 15/159 (9%) Query: 34 AWVSANAGSGKTHIL-VQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L V+ + L++ +L +T T A AEM R+L + Sbjct: 4 LVYKASAGSGKTFTLAVEYIKHLIINPRAYRQILAVTFTNKATAEMKERILTQLYGIWKG 63 Query: 93 SDEILSAEITKIQGKKP-----------NKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + A + +I+ K + +A L +L +V+TI +F + Sbjct: 64 APSS-EAYLERIKNYKLKIKEEGGDGLTDGEIRQRAGMALQYMLHDYSRFRVETIDSFFQ 122 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 ++M+ E ++ + I E + +++ +A S + + Sbjct: 123 SVMRNLARELELSPNLNI--ELNNSEVLSDAVDSLIEKL 159 >gi|255076889|ref|XP_002502109.1| ATP-dependent DNA helicase [Micromonas sp. RCC299] gi|226517374|gb|ACO63367.1| ATP-dependent DNA helicase [Micromonas sp. RCC299] Length = 907 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 71/230 (30%), Gaps = 46/230 (20%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 + P V A GSGKT +LV RV L+ PS +LC+T T AA EM Sbjct: 60 NDEQIAAIVAPVAPMKVLAGPGSGKTRVLVGRVTHLINELGVPPSHILCITFTNKAAREM 119 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R++ + E + T H+ Sbjct: 120 RERLVASVGE-------------------------------------ENARQITAGTFHS 142 Query: 139 FCEAIMQQFPLEA---NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 ++++ + F I DE +K +I + + L K+ Sbjct: 143 VASRMLRKHVHLLDGYGRGNDFVIYDEADTKSIIRKIMVDVFMEDKKKADPALAKSRISA 202 Query: 196 LEISNDE----DIETLISDIISNRTALKLIFFFF-SYLWRRKIIEKSLWS 240 + + D D + + R +LK + + E +L S Sbjct: 203 AKSAVDACVGMDGRRMARALCDTRPSLKRDPYIRDQFPRLYDEYEANLRS 252 >gi|160888166|ref|ZP_02069169.1| hypothetical protein BACUNI_00574 [Bacteroides uniformis ATCC 8492] gi|156862301|gb|EDO55732.1| hypothetical protein BACUNI_00574 [Bacteroides uniformis ATCC 8492] Length = 1099 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 68/159 (42%), Gaps = 15/159 (9%) Query: 34 AWVSANAGSGKTHIL-VQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 A+AGSGKT L V+ + L++ +L +T T A AEM R+L + Sbjct: 4 LVYKASAGSGKTFTLAVEYIKHLIINPRAYRQILAVTFTNKATAEMKERILTQLYGIWKG 63 Query: 93 SDEILSAEITKIQGKKP-----------NKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + A + +I+ K + +A L +L +V+TI +F + Sbjct: 64 APSS-EAYLERIKNYKLKIKEEGGDGLTDGEIRQRAGMALQYMLHDYSRFRVETIDSFFQ 122 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 ++M+ E ++ + I E + +++ +A S + + Sbjct: 123 SVMRNLARELELSPNLNI--ELNNSEVLSDAVDSLIEKL 159 >gi|149279369|ref|ZP_01885500.1| ATP-dependent DNA helicase II [Pedobacter sp. BAL39] gi|149229895|gb|EDM35283.1| ATP-dependent DNA helicase II [Pedobacter sp. BAL39] Length = 747 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 68/198 (34%), Gaps = 47/198 (23%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A AGSGKT ++ RV L+ +L LT T A+ +M R++ +I + Sbjct: 1 MIVAGAGSGKTRVITYRVAHLIEKGVDAFNILVLTFTNKASKDMRERIMNVIGPEAK--- 57 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 + + T H+ I++ + Sbjct: 58 -----------------------------------NIWMGTFHSVFAKILRVEAEKIGYP 82 Query: 155 SHFAIADEEQSKKLIEEAKKST-LASIMLDNN------EELKKAFYEILEISNDEDIETL 207 S+F I D + SK LI + L + + N K E + +I+ Sbjct: 83 SNFTIYDSDDSKSLIRAILREMQLDDKLYNANFVHNRISSAKNNLVSHFEYMENPEIQA- 141 Query: 208 ISDIISNRTALKLIFFFF 225 D+ + R L +I+ + Sbjct: 142 -EDVANKRPLLGVIYETY 158 >gi|158521072|ref|YP_001528942.1| exodeoxyribonuclease V, beta subunit [Desulfococcus oleovorans Hxd3] gi|158509898|gb|ABW66865.1| exodeoxyribonuclease V, beta subunit [Desulfococcus oleovorans Hxd3] Length = 1203 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 65/151 (43%), Gaps = 4/151 (2%) Query: 35 WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH-L 92 V A+AG+GKT+ +V LRL+ +A +L +T+T+AA E+ ++ + + Sbjct: 21 LVEASAGTGKTYAIVGLFLRLIAETDAGVDNILAVTYTEAATQELKGKIRTALRKAATAF 80 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 +S + K ++ + A L LE + TIH FC ++ +F E+ Sbjct: 81 KTGTMSGDPLIDGLLKKRETTRAVAARRLKRALEAFDQAAIFTIHGFCSRMLGEFAFESG 140 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 + + + +L+++ + Sbjct: 141 VLFGAEMVTNQD--ELVQQVARDFWRQRFYG 169 >gi|318040198|ref|ZP_07972154.1| UvrD/REP helicase [Synechococcus sp. CB0101] Length = 1204 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 17/145 (11%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIITAWSH 91 + A+AG+GKT L VLRLL P LL +T T AAAAE+ R+ + Sbjct: 19 LLEASAGTGKTFALAHLVLRLLSEGRAPLAVEQLLVVTFTDAAAAELRDRIARRLQDALQ 78 Query: 92 L---------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 L D L+A + + P + LE + TIH FC Sbjct: 79 LLEPGSSATPGDAPLAAWLEALGPNPPALLRGRL-----LLALEQLDRADITTIHGFCRR 133 Query: 143 IMQQFPLEANITSHFAIADEEQSKK 167 +Q+ LEA + ++ E + ++ Sbjct: 134 TLQRQALEAGLGPAVSLESEGRERR 158 >gi|229592597|ref|YP_002874716.1| exodeoxyribonuclease V subunit beta [Pseudomonas fluorescens SBW25] gi|229364463|emb|CAY52290.1| exodeoxyribonuclease V beta chain [Pseudomonas fluorescens SBW25] Length = 1224 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 68/167 (40%), Gaps = 16/167 (9%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAA 74 LA S + A+AG+GKT + LRL+L + P +L +T T AA Sbjct: 7 ALAFPLKGSQLIEASAGTGKTFTISALYLRLVLGHGGDEAGFGRELLPPQILVVTFTDAA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILS---AEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 E+ R+ + + E + A I ++ + P + + A L I + Sbjct: 67 TKELRERIRIRLAEAARFFREEIEQPDALIADLRAEYPPEQWPACANRLDIAA-QWMDEA 125 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 V TIH++C+ ++++ ++ S F E L+ E + Sbjct: 126 AVSTIHSWCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWR 170 >gi|167035662|ref|YP_001670893.1| exodeoxyribonuclease V subunit beta [Pseudomonas putida GB-1] gi|166862150|gb|ABZ00558.1| exodeoxyribonuclease V, beta subunit [Pseudomonas putida GB-1] Length = 1224 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 13/159 (8%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT + LRL+L + P +L +T T AA E+ R+ Sbjct: 15 GSQLIEASAGTGKTFTISALYLRLILGHGGEQGFDRELLPPQILVVTFTDAATKELRERI 74 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFC 140 + + L + + + + + L ++ V TIH +C Sbjct: 75 RARLAEAARFFRGELEGADPLLHQLRDDYPQEAWPRCAGRLEIAVQWMDEAAVSTIHGWC 134 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 + ++++ ++ S F E +L+ + + Sbjct: 135 QRMLREHAFDSG--SLFTQTLETDHSELLGQVMRDYWRR 171 >gi|325274372|ref|ZP_08140466.1| exodeoxyribonuclease V, beta subunit [Pseudomonas sp. TJI-51] gi|324100494|gb|EGB98246.1| exodeoxyribonuclease V, beta subunit [Pseudomonas sp. TJI-51] Length = 1224 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 13/159 (8%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT + LRL+L + P +L +T T AA E+ R+ Sbjct: 15 GSQLIEASAGTGKTFTISALYLRLILGHGGEQGFARELLPPQILVVTFTDAATKELRERI 74 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFC 140 + + L + + + + + L ++ V TIH +C Sbjct: 75 RARLAEAARFFRGELEGADPLLHQLRDDYPQEAWPRCAGRLEIAVQWMDEAAVSTIHGWC 134 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 + ++++ ++ S F E +L+ + + Sbjct: 135 QRMLREHAFDSG--SLFTQTLETDHSELLGQVMRDYWRR 171 >gi|308125359|ref|ZP_07663372.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|308113235|gb|EFO50775.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] Length = 738 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 68/201 (33%), Gaps = 44/201 (21%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 + ++ A + + A G+GKT LV+RV LL P +L LT + AA EM+ Sbjct: 198 NEQQKHAADHRGKPYLLEAGPGTGKTQTLVKRVEGLLDEGVDPRRILILTFSNKAAGEMA 257 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ E + + T HAF Sbjct: 258 ERLASKNK--------------------------------------EAVASMWIGTFHAF 279 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 ++++F E + + ++ EA + + L++ L I + Sbjct: 280 GLDLVRRFYSELGFEKEPRLLERTEAV----EALEDEFPRLGLEHFRNLYDPTEHITNLL 335 Query: 200 NDEDIETLISDIISNRTALKL 220 + I +++ +R +L Sbjct: 336 S--AISRAKDEVVDHRDYFRL 354 >gi|124265321|ref|YP_001019325.1| putative ATP-dependent DNA helicase rep protein [Methylibium petroleiphilum PM1] gi|124258096|gb|ABM93090.1| putative ATP-dependent DNA helicase rep protein [Methylibium petroleiphilum PM1] Length = 693 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 53/148 (35%), Gaps = 37/148 (25%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLE 84 V A AGSGKT ++ ++ RLL A PS + +T T AAAEM R Sbjct: 2 QAVHHLAGPCLVLAGAGSGKTRVITHKIARLLEAGLAPSQIAAITFTNKAAAEMRER--- 58 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + G +P K GL + T H+ ++ Sbjct: 59 ----------------AKALVGARPAK------------------GLLISTFHSLGVRLL 84 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEA 172 ++ + F+I D + ++ +A Sbjct: 85 REDGAALGLKPQFSILDSDDVLGILRDA 112 >gi|157962241|ref|YP_001502275.1| exodeoxyribonuclease V subunit beta [Shewanella pealeana ATCC 700345] gi|157847241|gb|ABV87740.1| exodeoxyribonuclease V, beta subunit [Shewanella pealeana ATCC 700345] Length = 1238 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 12/157 (7%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHP---STLLCLTHTKAAAAEMSHRVLEI 85 S + A+AG+GKT + +RLLL + P +L +T T AA E+ R+ + Sbjct: 38 GGSRLIEASAGTGKTFTIAGLYVRLLLGHGIEAPLTCEQILVVTFTNAATGELRDRIRKK 97 Query: 86 IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I A+ + E+ + ++ + AR L L++ + TIH FC+ I+ Sbjct: 98 IQLAYRCFIGLEVDDELINSLYQATPEASLPIARKRLDLALKSLDEAAIFTIHGFCQRIL 157 Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLAS 179 E+++ S F + D E + A + Sbjct: 158 ADMAFESSLLFESEFTLDDSE----FLHHAVRDFWRE 190 >gi|255713190|ref|XP_002552877.1| KLTH0D03498p [Lachancea thermotolerans] gi|238934257|emb|CAR22439.1| KLTH0D03498p [Lachancea thermotolerans] Length = 1090 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 38/164 (23%) Query: 16 LISQTKSEQ--LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 L+S Q + D T++ V A G+GKT +L RV LLL +P ++ T TK Sbjct: 4 LLSSLNERQCESVTFDHTKALQVVAGPGTGKTKVLTTRVAYLLLEKGINPGDIIITTFTK 63 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 A EM R+ ++ + P L Sbjct: 64 KATLEMIERLSFLLEGTNI-----------------------------------NPSSLW 88 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I++Q + + + + + +I + + Sbjct: 89 IGTFHSICARILRQHGWKIGLPKDWRTFSDSDTDPIIHKLVEKV 132 >gi|330879358|gb|EGH13507.1| UvrD/REP helicase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 564 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 38/149 (25%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 S+Q+ AS + A G+GKT LVQRV +L+L PS +L LT + AA+E+S R Sbjct: 203 SQQVAASHRDSPFQLQAGPGTGKTRTLVQRVEKLILDGEDPSAILVLTFSNKAASELSER 262 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + LS + + + T HAF Sbjct: 263 I-------------ALSNPLAA-------------------------AAMWIGTFHAFGL 284 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIE 170 I+++F + + D + +L+E Sbjct: 285 DIIRRFHQILKLPPEPRLIDRLEGIELLE 313 >gi|262276563|ref|ZP_06054372.1| exodeoxyribonuclease V beta chain [Grimontia hollisae CIP 101886] gi|262220371|gb|EEY71687.1| exodeoxyribonuclease V beta chain [Grimontia hollisae CIP 101886] Length = 1187 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLAN-----AHP-----STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + AHP +L +T T+AA E+ R+ Sbjct: 18 LIEASAGTGKTFTIAGLYLRLLLGHGNKDTAHPRPLSVDKILVVTFTEAATQELRDRIRS 77 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I + L+ ++ I+ + +D +A LL+ + TIH FC+ ++ Sbjct: 78 RIHD-ARLAFSRGHSDDPVIKPLLDDIADHVQAERLLLQAERQMDEAAIYTIHGFCQRML 136 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F L E A Sbjct: 137 TQNAFESG--SLFTNEFITDESALRERAVADYWRRQFY 172 >gi|289209414|ref|YP_003461480.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix] gi|288945045|gb|ADC72744.1| UvrD/REP helicase [Thioalkalivibrio sp. K90mix] Length = 685 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 69/221 (31%), Gaps = 45/221 (20%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76 S +Q + R V A AGSGKT ++ +++ L+ ++ +T T AA Sbjct: 5 SLNPQQQAAVTTTDRPLLVLAGAGSGKTRVITEKIAYLIEQRGLEARRIVAITFTNKAAR 64 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV ++ E GL V T Sbjct: 65 EMRERVQGRLSK-------------------------------------EQARGLGVSTF 87 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H F +++ + + + F+I D + L+ E D E+ I Sbjct: 88 HTFGLNFLRRELAASGLRAGFSILDPGDCRSLLREITYR------DDTGSEVDALIGHIS 141 Query: 197 EISNDE-DIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 ND E + + R A + I Y + Sbjct: 142 RWKNDLMTPEEALHEASQMRDAPEAIAAANLYPRYEDALRA 182 >gi|152991783|ref|YP_001357504.1| putative recombination protein RecB [Sulfurovum sp. NBC37-1] gi|151423644|dbj|BAF71147.1| ATP-dependent DNA helicase, UvrD/REP family [Sulfurovum sp. NBC37-1] Length = 911 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 12/168 (7%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 SA+AGSGKT L R + LL ++L T T AAAEM RV++ + HL + Sbjct: 10 SASAGSGKTFALSVRYISLLFMGEPAGSILAATFTNKAAAEMRQRVVDSLR---HLGENK 66 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 + +++ K +L L + + T+ +F I++ LE + Sbjct: 67 AFLDAIEVETGMSRDVLFRKQPEVLKRFLSSTS--HIVTLDSFFSKILRSASLELGLEPD 124 Query: 157 FAIAD---EEQSKKLIEEA----KKSTLASIMLDNNEELKKAFYEILE 197 F + EE K ++E S L + +D ++ K +++++ Sbjct: 125 FVTKEQPKEELEKHFLDEVDANGMLSDLVKLAMDIEDKRFKKIFDLMQ 172 >gi|320108652|ref|YP_004184242.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4] gi|319927173|gb|ADV84248.1| UvrD/REP helicase [Terriglobus saanensis SP1PR4] Length = 927 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 62/171 (36%), Gaps = 45/171 (26%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 +D ++ + E +L D + A AGSGKT ++ R+ L+ ++L +T Sbjct: 3 HLLDQMNPQQREGVLQVD--GPVLLLAGAGSGKTRVITHRIAYLIQERGVAADSILAVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV ++I S Sbjct: 61 TNKAAKEMGERVDKLIGHTSLAKPL----------------------------------- 85 Query: 131 LKVQTIHAFCEAIMQQFPLE-----ANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ +T FAI DE + ++++A K Sbjct: 86 --IATFHSLCVRILRRDIEAMRVNGIGLTKSFAIYDENDQQAVVKQALKRL 134 >gi|308271533|emb|CBX28141.1| hypothetical protein N47_G34650 [uncultured Desulfobacterium sp.] Length = 1228 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 70/195 (35%), Gaps = 18/195 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A AG+GKT+ + LRL++ N +L +T TKAA ++ R+ + Sbjct: 17 LIEAGAGTGKTYTIESLFLRLIIENKLTIDQILVVTFTKAATEKLKERIRSKLAKAKEAF 76 Query: 94 DEILSAEI-------------TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 E L + I + + A L+ L + TIH FC Sbjct: 77 SEGLKDKRPDDTLSEDALPKDALIDALCEKYENHTLAYDLINNALINFNEAAIFTIHGFC 136 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 I+ + E + F L++E + E Y + +IS Sbjct: 137 ARILSDYSFETG--NLFDTELVTDQTDLVQEIAEDFWRINFYRAEPEFIN--YCLTKISG 192 Query: 201 DEDIETLISDIISNR 215 + L+S +S+R Sbjct: 193 PDYFSRLVSKQVSSR 207 >gi|28197981|ref|NP_778295.1| DNA-dependent helicase II [Xylella fastidiosa Temecula1] gi|28056041|gb|AAO27944.1| DNA helicase II [Xylella fastidiosa Temecula1] gi|307579063|gb|ADN63032.1| DNA-dependent helicase II [Xylella fastidiosa subsp. fastidiosa GB514] Length = 728 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 62/167 (37%), Gaps = 41/167 (24%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLT 69 S + ++Q + E + A+ + A AGSGKT +L R++ L + +++ +T Sbjct: 4 SHVLYHLNQNQREAVAAA--PGHYLILAGAGSGKTRVLTHRIVWLNEVNGVPTHSMMAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA E+ R+ + + Sbjct: 62 FTNKAAGEIQQRID--------------------------------------LQLRHGKR 83 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G+ + T H+ +++ +A + +F + D + +L++ +S Sbjct: 84 GMWIGTFHSLAHRLLRLHWNDATLPENFQVIDSDDQLRLVKRVIQSL 130 >gi|326801224|ref|YP_004319043.1| UvrD/REP helicase [Sphingobacterium sp. 21] gi|326551988|gb|ADZ80373.1| UvrD/REP helicase [Sphingobacterium sp. 21] Length = 729 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 63/164 (38%), Gaps = 38/164 (23%) Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 I+ + +QL A + V A AG+GKT ++ +V L+ P+ +L LT T+ Sbjct: 94 INYKKELNPQQLAAVCTLDKPLLVIAGAGTGKTRVITYKVSYLIEKGFEPNEILLLTFTR 153 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 +A EM +RV +++ A S IT + G Sbjct: 154 KSANEMLNRVQKLLHAKS----------ITNVLG-------------------------- 177 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+F ++++ + +F I D E +I K Sbjct: 178 -GTFHSFANYALRKYHALVGLPPNFTIIDGEDVVDIISLLKTEL 220 >gi|300869706|ref|YP_003784577.1| exodeoxyribonuclease V beta chain [Brachyspira pilosicoli 95/1000] gi|300687405|gb|ADK30076.1| exodeoxyribonuclease V beta chain [Brachyspira pilosicoli 95/1000] Length = 308 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 32/229 (13%) Query: 20 TKSEQLLASDPTRS---AWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAA 75 S+Q D + +VSA+AG+GKT + + L+LL S ++ +T TKAAA Sbjct: 3 LNSKQQEIIDLFLNEGICFVSASAGTGKTTTITEAYLKLLENKKQKVSNIVVITFTKAAA 62 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ KI+ K D + + IL K+ T Sbjct: 63 NEMLIRIRR------------------KIREKINEGKDTDYWKDIYKEILTN---AKIST 101 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN--EELKKAFY 193 IH+F +I++++ + N+ I +E E + + ++ DN EE++K + Sbjct: 102 IHSFANSIVKEYSIYLNMPPKITILEENND---FYEVIHNKILELLNDNEFSEEIRKNYR 158 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 + S D+ I + + +I + L+ I F KI+E L+ A Sbjct: 159 IFTDESKDKFINDIFNFLIKIKPRLENIKTFEEEA--NKILEIELYDNA 205 >gi|163857713|ref|YP_001632011.1| ATP-dependent DNA helicase [Bordetella petrii DSM 12804] gi|163261441|emb|CAP43743.1| ATP-dependent DNA helicase [Bordetella petrii] Length = 707 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 58/171 (33%), Gaps = 35/171 (20%) Query: 11 SETIDLISQTKSEQLLASD-----PTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPST 64 + D +S+ Q A++ P V A AGSGKT L RV L+L A P Sbjct: 20 PDPADYLSELNPAQRAAAEFGVGQPDAPALLVIAGAGSGKTSTLAHRVAHLILNGADPQR 79 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L LT ++ AA EM RV ++ L Sbjct: 80 MLLLTFSRRAAQEMERRVGMVLRRVMK-----------------------------LHAT 110 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + P T H +++ ++ F I D ++ L+ + Sbjct: 111 QQAPALPWAGTFHGIGARLLRDCATRIGLSESFTIHDRGDAEDLMGMVRHE 161 >gi|317063871|ref|ZP_07928356.1| ATP-dependent nuclease subunit A [Fusobacterium ulcerans ATCC 49185] gi|313689547|gb|EFS26382.1| ATP-dependent nuclease subunit A [Fusobacterium ulcerans ATCC 49185] Length = 1030 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 91/192 (47%), Gaps = 11/192 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT+ L + L +L +T TK A AE+ R+L+ + + Sbjct: 12 LVLKASAGTGKTYRLSLEYVGALCRGIDFKDILVMTFTKKATAEIKERILKFLKELEENT 71 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF-PLEAN 152 + S + + + + K + +++ LKV TI AF I ++ Sbjct: 72 KDGESIKENLKKIYPDMEFNHEKISSIYRDLIQNRDKLKVYTIDAFTNLIFKKAIAPYLK 131 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE---TLIS 209 I + I D+++++K++ + + +N++ +AF LE ++++D+E TLI Sbjct: 132 I-YSYEIIDDDENRKILIKTFQKIF------DNKDDFRAFKGFLEDNSEKDMENYLTLIK 184 Query: 210 DIISNRTALKLI 221 ++++ R + ++ Sbjct: 185 NLLNERWKVIVL 196 >gi|304382260|ref|ZP_07364767.1| ATP-dependent helicase [Prevotella marshii DSM 16973] gi|304336617|gb|EFM02846.1| ATP-dependent helicase [Prevotella marshii DSM 16973] Length = 1088 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 68/160 (42%), Gaps = 4/160 (2%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEI 85 P A+AGSGKT L ++LL+ + + +++L +T T A EM R+L Sbjct: 13 VETPKSLTIYKASAGSGKTFTLAVEYMKLLIRDPYAYASILAVTFTNKATEEMKMRILGQ 72 Query: 86 I-TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + W L D + + +A L +L +V+TI F ++++ Sbjct: 73 LYGIWKLLPDSQAYTDRICHTLELSPAVAAERAGIALRLLLHNYSYFRVETIDTFFQSVL 132 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 + E ++ ++ + E +++ ++A + + N Sbjct: 133 RNLARELDLNANLRV--ELNDRQVEQQAVDKLIEELDEHN 170 >gi|224371313|ref|YP_002605477.1| PcrA2 [Desulfobacterium autotrophicum HRM2] gi|223694030|gb|ACN17313.1| PcrA2 [Desulfobacterium autotrophicum HRM2] Length = 1157 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 66/185 (35%), Gaps = 48/185 (25%) Query: 4 HNSFQEHSETIDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLA-NAH 61 H + SE++D++ EQ LA + A G+GKT L R+ L+ Sbjct: 482 HRASPVASESMDIVESLNPEQRLAVKGQGVPLLIEAGPGTGKTRTLTARIAWLIRDQGVA 541 Query: 62 PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121 P T+L LT T AA EM R+ ++ Sbjct: 542 PGTILALTFTNRAAGEMQERLNTLLPG--------------------------------- 568 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK---KSTLA 178 G + T H FC +++++ I D+ K+++ +A L+ Sbjct: 569 -----QQGSVWAGTFHRFCLMVLKEYAGFKGF-----IVDDPARKEMLNQAVAHADVALS 618 Query: 179 SIMLD 183 S +LD Sbjct: 619 SALLD 623 >gi|190571383|ref|YP_001975741.1| helicase II, UvrD [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018782|ref|ZP_03334590.1| helicase II, UvrD [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357655|emb|CAQ55099.1| helicase II, UvrD [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995733|gb|EEB56373.1| helicase II, UvrD [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 637 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 79/223 (35%), Gaps = 52/223 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 ++ + L++ +QL ++ + A AG+GKT + R+ ++ A+ +L + Sbjct: 1 MNDYLSLLN--PEQQLAVTNINGPVLILAGAGTGKTRTITSRIAHIIRNGHAYSDEILAV 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RVLE+ Sbjct: 59 TFTNKAANEMVSRVLELTGT---------------------------------------- 78 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T HA I++ + +F I + + K+ + I D E Sbjct: 79 NIPWLGTFHAIAAKILRMHAEIVGLNPNFTIIGVDDQL----QVIKNIINEINPDYLSEK 134 Query: 189 KKAFYEILEISNDE-DIETLISDIISNR----TALKLIFFFFS 226 K I++ ++ + + + D+ S R TALK+ + + Sbjct: 135 YKTIMNIIQQWKEKCLLPSEVEDVQSFRPVYVTALKVYYQYQE 177 >gi|312963039|ref|ZP_07777525.1| exodeoxyribonuclease V beta subunit [Pseudomonas fluorescens WH6] gi|311282808|gb|EFQ61403.1| exodeoxyribonuclease V beta subunit [Pseudomonas fluorescens WH6] Length = 1224 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 16/167 (9%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAA 74 LA S + A+AG+GKT + LRL+L + P +L +T T AA Sbjct: 7 ALAFPLKGSQLIEASAGTGKTFTISALYLRLVLGHGGEVSGFGRELLPPQILVVTFTDAA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILS---AEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 E+ R+ + + + + A I ++ + P + + A L I + Sbjct: 67 TKELRERIRIRLAEAARFFRDEIDQPDALIADLREEYPAEQWPACANRLDIAA-QWMDEA 125 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 V TIH++C+ ++++ ++ S F E L+ E + Sbjct: 126 AVSTIHSWCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWR 170 >gi|26991357|ref|NP_746782.1| exodeoxyribonuclease V, beta subunit [Pseudomonas putida KT2440] gi|24986421|gb|AAN70246.1|AE016664_2 exodeoxyribonuclease V, beta subunit [Pseudomonas putida KT2440] Length = 1224 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 13/159 (8%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT + LRL+L + P +L +T T AA E+ R+ Sbjct: 15 GSQLIEASAGTGKTFTISALYLRLILGHGGEQGFERELLPPQILVVTFTDAATKELRERI 74 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFC 140 + + L + + + + + + L ++ V TIH +C Sbjct: 75 RARLAEAARFFRGELEGADPLLHQLRDDYPQENWPRCAGRLEIAVQWMDEAAVSTIHGWC 134 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 + ++++ ++ S F E +L+ + + Sbjct: 135 QRMLREHAFDSG--SLFTQTLETDHSELLGQVMRDYWRR 171 >gi|24373706|ref|NP_717749.1| exodeoxyribonuclease V, beta subunit [Shewanella oneidensis MR-1] gi|24348071|gb|AAN55193.1|AE015657_5 exodeoxyribonuclease V, beta subunit [Shewanella oneidensis MR-1] Length = 1259 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 20/228 (8%) Query: 24 QLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANA--HP---STLLCLTHTKA 73 Q L DP S + A+AG+GKT+ + LRLLL + P +L +T T A Sbjct: 8 QALPLDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGLSEPLSCEQILVVTFTNA 67 Query: 74 AAAEMSHRVLEIIT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 A E+ R+ I A+ ++ + K +S+ + A L++ Sbjct: 68 ATEELRDRIRRRIQVAFKCFLGLEINDPFVQALYDKTPESERAIALRRFDLALKSLDEAA 127 Query: 133 VQTIHAFCEAIMQQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + TIH FC+ I+ E+++ S F + D E + A + E L + Sbjct: 128 IFTIHGFCQRILADLAFESSLLFESDFTLDDSE----FLHHAVRDFWREACYPLPEYLAQ 183 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 E + + + + ++ A K + + + + +S+ Sbjct: 184 IIAS--EFGDPDGLVKQLRALLGASEA-KPLKPVQPFARLAESLSQSV 228 >gi|126090202|ref|YP_001041683.1| hypothetical protein Sbal_4565 [Shewanella baltica OS155] gi|126174495|ref|YP_001050644.1| exodeoxyribonuclease V subunit beta [Shewanella baltica OS155] gi|125997700|gb|ABN61775.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS155] gi|125999858|gb|ABN63928.1| hypothetical protein Sbal_4565 [Shewanella baltica OS155] Length = 1273 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 17/184 (9%) Query: 10 HSETIDLISQTKSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHP 62 SE I L + A DP S + A+AG+GKT+ + LRLLL + A P Sbjct: 1 MSEPIQLNAAALHSAAQALDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGIAAP 60 Query: 63 ---STLLCLTHTKAAAAEMSHRVLEIIT-AWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118 +L +T T AA E+ R+ I A+ ++ + +S+ + A Sbjct: 61 LTCEQILVVTFTNAATEELRDRIRRRIQVAFKCFLGLTIADPFVQALYDNTPESERAIAL 120 Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI--TSHFAIADEEQSKKLIEEAKKST 176 L++ + TIH FC+ I+ E+++ S F + D E + A + Sbjct: 121 RRFDLALKSLDEAAIFTIHGFCQRILSDLAFESSLLFESDFTLDDSE----FLHHAVRDF 176 Query: 177 LASI 180 Sbjct: 177 WREA 180 >gi|226326730|ref|ZP_03802248.1| hypothetical protein PROPEN_00588 [Proteus penneri ATCC 35198] gi|225204951|gb|EEG87305.1| hypothetical protein PROPEN_00588 [Proteus penneri ATCC 35198] Length = 519 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 54/158 (34%), Gaps = 38/158 (24%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHR 81 +Q + V A AGSGKT ++ ++ L+ +P + +T T AA EM R Sbjct: 13 QQKAVEYVSGPCLVLAGAGSGKTRVITHKIAHLIRQCQYPAKQIAAVTFTNKAAREMKER 72 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + + GL + T H Sbjct: 73 VAQTLGR-------------------------------------QEAKGLMISTFHTLGL 95 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 I+++ I + F++ D++ L++E L Sbjct: 96 EIIKREYKALGIKAKFSLFDDQDQSALLKELTADLLEE 133 >gi|257469635|ref|ZP_05633727.1| UvrD/REP helicase [Fusobacterium ulcerans ATCC 49185] Length = 1023 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 91/192 (47%), Gaps = 11/192 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT+ L + L +L +T TK A AE+ R+L+ + + Sbjct: 5 LVLKASAGTGKTYRLSLEYVGALCRGIDFKDILVMTFTKKATAEIKERILKFLKELEENT 64 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF-PLEAN 152 + S + + + + K + +++ LKV TI AF I ++ Sbjct: 65 KDGESIKENLKKIYPDMEFNHEKISSIYRDLIQNRDKLKVYTIDAFTNLIFKKAIAPYLK 124 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE---TLIS 209 I + I D+++++K++ + + +N++ +AF LE ++++D+E TLI Sbjct: 125 I-YSYEIIDDDENRKILIKTFQKIF------DNKDDFRAFKGFLEDNSEKDMENYLTLIK 177 Query: 210 DIISNRTALKLI 221 ++++ R + ++ Sbjct: 178 NLLNERWKVIVL 189 >gi|115378130|ref|ZP_01465306.1| ATP-dependent DNA helicase [Stigmatella aurantiaca DW4/3-1] gi|310821254|ref|YP_003953612.1| ATP-dependent DNA helicase, uvrd/rep family [Stigmatella aurantiaca DW4/3-1] gi|115364872|gb|EAU63931.1| ATP-dependent DNA helicase [Stigmatella aurantiaca DW4/3-1] gi|309394326|gb|ADO71785.1| ATP-dependent DNA helicase, UvrD/REP family [Stigmatella aurantiaca DW4/3-1] Length = 692 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 43/163 (26%), Positives = 60/163 (36%), Gaps = 37/163 (22%) Query: 14 IDLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID + EQL A + A V A AG+GKT L RV RLL P +L LT T Sbjct: 19 IDYAALLNEEQLRAVEAGEGPALVIAGAGTGKTRTLTFRVARLLERGIPPEGVLLLTFTN 78 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM+ RV E+ + + R +L Sbjct: 79 KAAREMTRRVEELAGGFVDV-------------------------RRILG---------- 103 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H A+++QF + F + D E ++ L+ Sbjct: 104 -GTFHHAAHALLRQFAPTLGFATSFTVLDREDARDLMASCVSE 145 >gi|26554344|ref|NP_758278.1| ATP-dependent DNA helicase [Mycoplasma penetrans HF-2] gi|26454354|dbj|BAC44682.1| ATP-dependent DNA helicase [Mycoplasma penetrans HF-2] Length = 738 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 61/164 (37%), Gaps = 44/164 (26%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 D ++ + E + A D V A AGSGKT +L R + LL N +L T T Sbjct: 7 DSFNEKQYEAITAPD-DVPLMVIAGAGSGKTAVLTYRAVYLLNELNYVSDRILGFTFTNK 65 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ ++I S + Sbjct: 66 AANEMKDRITKVIPNRSFKY---------------------------------------I 86 Query: 134 QTIHAFCEAIMQQFPLEAN---ITSHFAIADEEQSKKLIEEAKK 174 T H+ C I+++ E N I S+F I DE+ +++E K Sbjct: 87 GTFHSVCLRILREDIKELNIGKINSNFTIIDEDDQNSILKEIYK 130 >gi|149923566|ref|ZP_01911966.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1] gi|149815585|gb|EDM75117.1| UvrD/REP helicase [Plesiocystis pacifica SIR-1] Length = 693 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 60/162 (37%), Gaps = 37/162 (22%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 +DL S +++ V A AGSGKT ++ R+ RL+ P ++ L+ T Sbjct: 1 MDLSSLNPAQREAVLHTEGPLLVLAGAGSGKTRVITHRIARLMELGTQPEEIVALSFTNK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R+ +++ +KA+ L++ Sbjct: 61 AAEEMRERLAKMVGR--------------------------AKAKALVL----------- 83 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ +M++ P + F I D+ ++ + Sbjct: 84 GTFHSLGARMMREDPKGFEVPPRFQILDQGDVNGIVRALLRE 125 >gi|304408643|ref|ZP_07390264.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS183] gi|307305472|ref|ZP_07585220.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica BA175] gi|304352464|gb|EFM16861.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS183] gi|306911775|gb|EFN42200.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica BA175] Length = 1273 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 12/158 (7%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHP---STLLCLTHTKAAAAEMSHRVLEI 85 S + A+AG+GKT+ + LRLLL + A P +L +T T AA E+ R+ Sbjct: 27 GGSRLIEASAGTGKTYTISGLYLRLLLGDGIAAPLTCEQILVVTFTNAATEELRDRIRRR 86 Query: 86 IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I A+ ++ + +S+ + A L++ + TIH FC+ I+ Sbjct: 87 IQVAFKCFLGLTIADPFVQALYDNTPESERAIALRRFDLALKSLDEAAIFTIHGFCQRIL 146 Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASI 180 E+++ S F + D E + A + Sbjct: 147 SDLAFESSLLFESDFTLDDSE----FLHHAVRDFWREA 180 >gi|226226146|ref|YP_002760252.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27] gi|226089337|dbj|BAH37782.1| ATP-dependent DNA helicase [Gemmatimonas aurantiaca T-27] Length = 702 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 38/159 (23%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + ++ A+ + A AGSGKT L+ RV L+ P +L LT T+ +A E Sbjct: 26 ALNPAQAEAANHGDAPLLIVAGAGSGKTRTLIHRVAALIRRGIPPHRILLLTFTRRSAQE 85 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R ++ S T H Sbjct: 86 MLSRCERLVGPASQSVQG--------------------------------------GTFH 107 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 ++++F A + + F I D+ + L+ A+ + Sbjct: 108 GVAHRLLRRFGPSAGLPADFTILDQSDAGDLMGLARSAL 146 >gi|219871763|ref|YP_002476138.1| exodeoxyribonuclease V subunit beta [Haemophilus parasuis SH0165] gi|219691967|gb|ACL33190.1| exodeoxyribonuclease V, beta subunit [Haemophilus parasuis SH0165] Length = 1195 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 14/184 (7%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEI 85 +S+ + A+AG+GKT+ + LRL+L P +L +T TKAA E+ R+ E Sbjct: 12 NQSSLIEASAGTGKTYTMANLYLRLILGVRCPSPLTVEQILVVTFTKAATQELRDRIREK 71 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-------GGLKVQTIHA 138 + + S E + + + + L L + TI + Sbjct: 72 LVNVGKWFRDPSSKEAQEALQEPFLAELYQEVQPRLNECLLRLKIAEREIDLASIFTIDS 131 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC+ ++ QF + I F I +L+ + T + A E L+ Sbjct: 132 FCQKMLFQFAFSSGI--RFDIDLLTNESELLNRFSEETWRELFYPMGLAETVAVAEELKT 189 Query: 199 SNDE 202 +D Sbjct: 190 PSDA 193 >gi|317495616|ref|ZP_07953983.1| UvrD/REP helicase [Gemella moribillum M424] gi|316914235|gb|EFV35714.1| UvrD/REP helicase [Gemella moribillum M424] Length = 1214 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 79/220 (35%), Gaps = 37/220 (16%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAE 77 T ++ + V+A AGSGKT +L +R+ R + L LL LT T AAA Sbjct: 18 PTSAQWQAIALTGADVLVAAAAGSGKTEVLSERIARKVALDRWDIDKLLVLTFTTAAAKN 77 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV IT ++ S + K R L + V TI Sbjct: 78 MLVRVENKIT-------------------ERLLASGLEKDRLFLRKQSMLMNDVYVSTID 118 Query: 138 AFCEAIMQQFPLEAN---------ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 +FC I+++F ++ +F I SK ++ + L +N Sbjct: 119 SFCLNILRKFYYLVEEEIAGSKKYLSPNFNILPN--SKNMLINSANEVLERFARENKIIT 176 Query: 189 KKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYL 228 + F + N +I +I L I F YL Sbjct: 177 DELFTIFGDKKN------IIDSLIDTYYKLLTIPNFEQYL 210 >gi|28493047|ref|NP_787208.1| ATP-dependent DNA helicase [Tropheryma whipplei str. Twist] gi|28476087|gb|AAO44177.1| ATP-dependent DNA helicase [Tropheryma whipplei str. Twist] Length = 743 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTK 72 DL+ +Q+ + +SA AGSGKT +L R+ L +L +T T Sbjct: 6 DLLKGLNPQQVEGVCYRGPTLLISAGAGSGKTKVLTHRIAGFLATGEASCDQILAITFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA+EM HR +++ ++ Sbjct: 66 KAASEMRHRTGDLVGLSVR--------------------------------------DMQ 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ +F I D + +I++ +ST Sbjct: 88 ISTFHSVCVRILRECVGHLGKAKNFTIYDAADQRAIIKQICQST 131 >gi|302135046|ref|ZP_07261036.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 1230 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 62/161 (38%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGSEQSGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSA--EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + +SA E+ ++ L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEISAPDELISQLREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|254432659|ref|ZP_05046362.1| exodeoxyribonuclease V, beta subunit [Cyanobium sp. PCC 7001] gi|197627112|gb|EDY39671.1| exodeoxyribonuclease V, beta subunit [Cyanobium sp. PCC 7001] Length = 1248 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 10/171 (5%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT L VLR + P LL +T T AAAAE+ R+ + + Sbjct: 18 LLEASAGTGKTFSLAHLVLRYVSEAEVPLRQLLVVTFTNAAAAELRDRIGQRLQTALGHL 77 Query: 94 DEILSAEITKIQGKKPNKSDMS-------KARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 D +A T ++ + R L+ LE G + TIH FC +Q+ Sbjct: 78 DRGEAAVETGNPVDPSLEAWLQWARPRAALLRAPLLLALEDLDGADITTIHGFCLRTLQR 137 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 LEA + + + L+ + +L L +++ Sbjct: 138 QALEAGQPPELQL--DSDAAPLVRQVCHDYWRQQVLALPPHLLDGVQRLVK 186 >gi|222054488|ref|YP_002536850.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. FRC-32] gi|221563777|gb|ACM19749.1| exodeoxyribonuclease V, beta subunit [Geobacter sp. FRC-32] Length = 1083 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 10/160 (6%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT + LRL+L P +L +T T+AA E+ R+ + +T + Sbjct: 16 LIEASAGTGKTFAIAALYLRLVLEQHLPVEQILVVTFTEAATKELRERIRKRLTEAAEAF 75 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + S + + + +D S A L L + + TIH FC+ ++Q+ P E+ Sbjct: 76 GQGTSTD-SFLMCLIGRITDRSAAGQALTNALRSFDEAAIFTIHGFCQRMLQENPFESG- 133 Query: 154 TSHFAIADEE---QSKKLIEEAKKSTLASIMLDNNEELKK 190 ++ D E + ++ + + + L + Sbjct: 134 ----SLYDTELVTDERPVLRQIAADYWRTHCYNAPPALAR 169 >gi|303233117|ref|ZP_07319790.1| UvrD/REP helicase [Atopobium vaginae PB189-T1-4] gi|302480702|gb|EFL43789.1| UvrD/REP helicase [Atopobium vaginae PB189-T1-4] Length = 1349 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 43/199 (21%), Positives = 74/199 (37%), Gaps = 41/199 (20%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLC 67 + ++ +A + +V A AGSGKT L QR++ L + S L Sbjct: 36 MGLNDNQARIAEMLSSPVFVEAGAGSGKTFTLTQRIVWALTKGSLDANHAYISDLSQALI 95 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AAA + + E + + + E Sbjct: 96 ITFTHAAARSIKEKTREALRRAGMHAQALQVDE--------------------------- 128 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + TIH C +++ + LE I + IA S+ L+ +A + SIM N+ E Sbjct: 129 ---AWISTIHGMCFRLIKLYALELGIDPNSTIASSANSEYLLHQAFNDVMRSIMDSNHCE 185 Query: 188 LKKAFYEILEISNDEDIET 206 +A ++L + +D T Sbjct: 186 --QAICDLLAMYPLKDKRT 202 >gi|42713|emb|CAA28481.1| rep helicase [Escherichia coli] Length = 637 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 66/200 (33%), Gaps = 43/200 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + GL + T H Sbjct: 67 VGQTLGHKEQR-------------------------------------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTALKL 220 + + I R L L Sbjct: 146 LKTPSQAAASAIGERDRLLL 165 >gi|320353670|ref|YP_004195009.1| UvrD/REP helicase [Desulfobulbus propionicus DSM 2032] gi|320122172|gb|ADW17718.1| UvrD/REP helicase [Desulfobulbus propionicus DSM 2032] Length = 731 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 59/157 (37%), Gaps = 38/157 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 ++ A+ V A AGSGKT LV R+ L+ P ++L LT T+ AA EM Sbjct: 26 NPAQYAAATHGDGPILVIAGAGSGKTRTLVYRMAYLIEQGVEPESILLLTFTRRAAQEML 85 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 HR + E+ + +I G T HA Sbjct: 86 HR-----------AGELTAGSCRRIMG---------------------------GTFHAT 107 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 +++++ + S+F I D ++ +I K S Sbjct: 108 ANILLRRYGHHLGLGSNFTIIDRGDAEGIINLLKSSL 144 >gi|217973462|ref|YP_002358213.1| exodeoxyribonuclease V subunit beta [Shewanella baltica OS223] gi|217498597|gb|ACK46790.1| exodeoxyribonuclease V, beta subunit [Shewanella baltica OS223] Length = 1273 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 12/158 (7%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLAN--AHP---STLLCLTHTKAAAAEMSHRVLEI 85 S + A+AG+GKT+ + LRLLL + A P +L +T T AA E+ R+ Sbjct: 27 GGSRLIEASAGTGKTYTISGLYLRLLLGDGIAAPLTCEQILVVTFTNAATEELRDRIRRR 86 Query: 86 IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I A+ ++ + +S+ + A L++ + TIH FC+ I+ Sbjct: 87 IQVAFKCFLGLTIADPFVQALYDNTPESERAIALRRFDLALKSLDEAAIFTIHGFCQRIL 146 Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASI 180 E+++ S F + D E + A + Sbjct: 147 SDLAFESSLLFESDFTLDDSE----FLHHAVRDFWREA 180 >gi|261749558|ref|YP_003257244.1| putative helicase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497651|gb|ACX84101.1| putative helicase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 707 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 39/165 (23%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D S S Q + V A AGSGKT ++ R++ ++ PS +L LT T Sbjct: 1 MDYRSSLNSSQRKIIETIHGPVLVIAGAGSGKTRVITHRIVHMINNLGIDPSRILALTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ N++D+ + Sbjct: 61 NKAAKEMKMRISNML-----------------------NQTDL--------------NQI 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ ++++ S++ I D+ S+ +I++ Sbjct: 84 SLGTFHSIFSWVLRKESHWLGYKSNYTIYDQRDSENVIKKILDDF 128 >gi|28572258|ref|NP_789038.1| ATP-dependent DNA helicase [Tropheryma whipplei TW08/27] gi|28410389|emb|CAD66775.1| ATP-dependent DNA helicase [Tropheryma whipplei TW08/27] Length = 743 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 15 DLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTK 72 DL+ +Q+ + +SA AGSGKT +L R+ L +L +T T Sbjct: 6 DLLKGLNPQQVEGVCYRGPTLLISAGAGSGKTKVLTHRIAGFLATGEASCDQILAITFTN 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA+EM HR +++ ++ Sbjct: 66 KAASEMRHRTGDLVGLSVR--------------------------------------DMQ 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ C I+++ +F I D + +I++ +ST Sbjct: 88 ISTFHSVCVRILRECVGHLGKAKNFTIYDAADQRAIIKQICQST 131 >gi|213971096|ref|ZP_03399216.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tomato T1] gi|301384181|ref|ZP_07232599.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tomato Max13] gi|302060529|ref|ZP_07252070.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tomato K40] gi|213924204|gb|EEB57779.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tomato T1] Length = 1230 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 62/161 (38%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGSEQSGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSA--EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + +SA E+ ++ L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEISAPDELISQLREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|262340924|ref|YP_003283779.1| ATP-dependent DNA helicase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272261|gb|ACY40169.1| ATP-dependent DNA helicase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 709 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 76/199 (38%), Gaps = 44/199 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 +S S++ + V A AGSGKT ++ R++ ++ +PS +L LT TK AA Sbjct: 1 MSLNSSQRKIIETINGPILVLAGAGSGKTRVITYRIVHMIQNIGINPSNILALTFTKKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM HR+ +I + + + T Sbjct: 61 KEMKHRISNMIDQ-------------------------------------KKLNQITLGT 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE- 194 H+ ++++ S++ I D+ S+ +I++ + I L E+++ E Sbjct: 84 FHSIFSILLRKESHLLGYKSNYTIYDQRDSENVIKKILEDINLDISLSTK-EIRRIISEY 142 Query: 195 ----ILEISNDEDIETLIS 209 + N++ E LI Sbjct: 143 KNNLYINKKNNKQSECLIK 161 >gi|94502048|ref|ZP_01308553.1| ATP-dependent DNA helicase Rep [Oceanobacter sp. RED65] gi|94425802|gb|EAT10805.1| ATP-dependent DNA helicase Rep [Oceanobacter sp. RED65] Length = 673 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 38/157 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT ++ ++ L+ ++ +T T AA EM Sbjct: 7 NPRQKESVLHIDGPLLVLAGAGSGKTSVITTKIAYLIEECGVPARNIMAVTFTNKAAKEM 66 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++ + GL V T H Sbjct: 67 KERVGKLVQGKAT-------------------------------------NGLTVSTFHN 89 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 I+++ + F+I D+ +K L+++ Sbjct: 90 LGLNIIRKECKHLGLRPGFSIFDDGDTKSLLKDIMHR 126 >gi|134291623|ref|YP_001115392.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Burkholderia vietnamiensis G4] gi|134134812|gb|ABO59137.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Burkholderia vietnamiensis G4] Length = 1264 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 60/166 (36%), Gaps = 20/166 (12%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPS---------TLLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT + +RL+L + P +L +T T AA E+ R+ Sbjct: 29 LIEASAGTGKTFTIAMLYVRLVLGHEPPGARAEPLTPPEILVVTFTDAATKELRDRIRAR 88 Query: 86 ITAWSHL---------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 + + ++ SD L E V TI Sbjct: 89 LNEAAACFQVEADAVTPQGAGETDLLHALRSDYPPSDWPACARRLQLAAEWMDDAAVSTI 148 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 H +C ++++ ++ S F+ A E +L+ E + + M Sbjct: 149 HGWCNRMLREHAFDS--DSLFSQALETDQTELLAEVVRDYWRTFMT 192 >gi|255034929|ref|YP_003085550.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053] gi|254947685|gb|ACT92385.1| UvrD/REP helicase [Dyadobacter fermentans DSM 18053] Length = 1112 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 21/185 (11%) Query: 37 SANAGSGKTHILVQRVLRLLL---ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 S++AGSGKT+ L + L+L L + + +L +T T AAA EM R+L ++ ++ + Sbjct: 6 SSSAGSGKTYTLTKEYLKLALHSNSELYFRHILAVTFTNAAANEMKDRILLMLRTFAAYT 65 Query: 94 DEI---------------LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + E + ++A+ + IL V TI Sbjct: 66 ETDAQPHPMMRDVVVEMYPDTEHNTELFAGACQLIAARAQMVFGQILHRYSDFSVMTIDK 125 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 F + ++ F E I F + L++ A LA I + E L + Sbjct: 126 FTQRLISSFTDELGIPFIFETQLDSD---LLDGAVDRLLARIGQEGEEVLTDIVEKYYRE 182 Query: 199 SNDED 203 + +E Sbjct: 183 NAEEG 187 >gi|302392152|ref|YP_003827972.1| UvrD/REP helicase [Acetohalobium arabaticum DSM 5501] gi|302204229|gb|ADL12907.1| UvrD/REP helicase [Acetohalobium arabaticum DSM 5501] Length = 1033 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 14/193 (7%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITA-WSHLS 93 + A+AG+GKT+ L + LL ++ +T T+ A AE+ R+ E + + + Sbjct: 4 VLKASAGTGKTYRLSLEYVAALLRGEDFGKIVVMTFTRKATAEIRERIFEHLEDILAEGA 63 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF-PLEAN 152 + + + +I + D+S+ + +L +KV TI +F I ++ Sbjct: 64 ESEVVKNLEEIYNDL--EVDLSQLEEVYEKMLCNKDQIKVYTIDSFINHIFREAIAPYLG 121 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE---TLIS 209 I + I D++Q+++++E K L NN K + L + + DI+ TLI Sbjct: 122 I-YSYEIVDDDQNREIVERVFKELL------NNPADFKLMEDFLLENVERDIDNYLTLID 174 Query: 210 DIISNRTALKLIF 222 +I +R LI Sbjct: 175 RLIKDRWKFLLIE 187 >gi|313673705|ref|YP_004051816.1| uvrd/rep helicase [Calditerrivibrio nitroreducens DSM 19672] gi|312940461|gb|ADR19653.1| UvrD/REP helicase [Calditerrivibrio nitroreducens DSM 19672] Length = 1029 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 50/217 (23%), Positives = 86/217 (39%), Gaps = 28/217 (12%) Query: 36 VSANAGSGKTHILVQRVLRLL-------------LANAHPSTLLCLTHTKAAAAEMSHRV 82 + A+AGSGKT+ L R + LL + S+++ +T T A+ EM RV Sbjct: 20 IKASAGSGKTYNLASRFIELLGLYLKNKNFSVAIIPPKDLSSIIAITFTNKASLEMKDRV 79 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 ++ + + L + AR LLI IL+ + V TI +F Sbjct: 80 MKFLKGLGGIRKNELEK----------SDITKEDARKLLIHILKNFEHINVTTIDSFMNT 129 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 + + F ++ + + I S+K+ E A + N E+L +L + D Sbjct: 130 LHKAFAVDLGVYPDYDIT--FDSEKIFESAVEMLFED--EKNFEDLINFLNTLLILDKDG 185 Query: 203 -DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 D E +I + ++L SY K I+ + Sbjct: 186 MDGEKIIIKNLKEYHKIELPENVISYDELEKRIKGDI 222 >gi|288927884|ref|ZP_06421731.1| putative UvrD/REP helicase domain protein [Prevotella sp. oral taxon 317 str. F0108] gi|288330718|gb|EFC69302.1| putative UvrD/REP helicase domain protein [Prevotella sp. oral taxon 317 str. F0108] Length = 1075 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 6/146 (4%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L +++LL N H +L +T T A EM R+L + L Sbjct: 11 ASAGSGKTFTLAVNYIKILLNNPHSYRNILAVTFTNKATEEMKLRILSQLYGIWKLLPSS 70 Query: 97 LS--AEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANIT 154 +IT G P + +A L +L +V+TI F +A+++ E ++T Sbjct: 71 KGYLDKITNELGISPEYAS-QQAGTALSNLLHNYNYFRVETIDTFFQAVLRNLARELDLT 129 Query: 155 SHFAIADEEQSKKLIEEAKKSTLASI 180 ++ + + + ++A + + Sbjct: 130 ANLHVGLNDSQVE--QQAVDKLIEDL 153 >gi|20384889|gb|AAL79572.1| exonuclease V beta subunit RecB [Pseudomonas syringae] Length = 1227 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 67/174 (38%), Gaps = 14/174 (8%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLL 66 +++ K+ LA S + A+AG+GKT + LRL+L + P +L Sbjct: 1 MNEQKTPLALAFPLRGSQLIEASAGTGKTFTISALYLRLILGHGAGESGFGRELLPPQIL 60 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSA--EITKIQGKKPNKSDMSKARHLLITI 124 +T T AA E+ R+ + + + + A + + + L Sbjct: 61 VVTFTDAATKELRDRIRTRLAEAARFFRDEIEAPDALVAQLRDQFAPGQWAACAGRLDIA 120 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 + V TIH++C+ ++++ ++ S F E L+ E + Sbjct: 121 AQWMDEAAVSTIHSWCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWR 172 >gi|329767683|ref|ZP_08259202.1| hypothetical protein HMPREF0428_00899 [Gemella haemolysans M341] gi|328839033|gb|EGF88621.1| hypothetical protein HMPREF0428_00899 [Gemella haemolysans M341] Length = 1212 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 86/229 (37%), Gaps = 43/229 (18%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAE 77 T + + V+A AGSGKT +L +R+ R + LL LT T AAA Sbjct: 18 PTPPQWQAIAITGADVLVAAAAGSGKTEVLSERIARKVATKRWDIDRLLVLTFTTAAAKN 77 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R+ + I+ + K+ + + K R L+ V TI Sbjct: 78 MIVRIEDKISERLLST------------NKEEDLLFLRKQRMLM-------NDAYVSTID 118 Query: 138 AFCEAIMQQFPLEAN---------ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 +FC ++++F ++ +F I SK L+ E + L ++ D++ Sbjct: 119 SFCLNVLKKFYYLVEEKIDNQIKYLSPNFGIL--ANSKGLLSETIGNVLEELVKDDSSST 176 Query: 189 KKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 F + ++I + I DI + + +K +E+ Sbjct: 177 DLLFTVF---DSKQNISSFIIDI---------YYKLLNIPNFQKYLEED 213 >gi|238755779|ref|ZP_04617111.1| ATP-dependent DNA helicase rep [Yersinia ruckeri ATCC 29473] gi|238706006|gb|EEP98391.1| ATP-dependent DNA helicase rep [Yersinia ruckeri ATCC 29473] Length = 672 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 67/183 (36%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ PS + +T T AA EM Sbjct: 4 NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYKPSHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR GL + T H Sbjct: 64 KERVAQTLGR--------------------------KEAR-----------GLMISTFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + S+F++ D + L+++ + L ++ +L++ I Sbjct: 87 LGLEIIKKEYKALGMKSNFSLFDAQDQMGLLKDLTQKWLE----EDKTQLQQLISTISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|46447235|ref|YP_008600.1| ATP-dependent DNA helicase, mutU [Candidatus Protochlamydia amoebophila UWE25] gi|46400876|emb|CAF24325.1| probable ATP-dependent DNA helicase, mutU [Candidatus Protochlamydia amoebophila UWE25] Length = 668 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 38/165 (23%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKA 73 +L + ++ + A AGSGKT +L R+ L+ N P +L LT T Sbjct: 4 ELETLNPEQKHAVKLINGRVLILAGAGSGKTRVLTMRMAYLIRYLNVSPRAILGLTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAEM HR+ + S ++K L Sbjct: 64 AAAEMRHRLANFV------------------------DSKLAKQVTL------------- 86 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 T H FC I++Q + T+ F++ DE+ ++LI + L Sbjct: 87 CTFHGFCMQILRQDIAKLGYTTKFSLYDEQDVQRLINMIVRDILQ 131 >gi|149192179|ref|ZP_01870398.1| ATP-dependent DNA helicase Rep [Vibrio shilonii AK1] gi|148833993|gb|EDL51011.1| ATP-dependent DNA helicase Rep [Vibrio shilonii AK1] Length = 185 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + + V A AGSGKT ++ ++ L+ + + +T T AA Sbjct: 1 MKLNPQQDMAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQSCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGKNESK-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E L LD +++L ++ Sbjct: 84 FHTMGLNIIRREYKALGLKAGFSLFDDQDQMALLKE-----LTEQQLDGDKDLLRSLLGA 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|53805125|ref|YP_113202.1| exodeoxyribonuclease V subunit beta [Methylococcus capsulatus str. Bath] gi|53758886|gb|AAU93177.1| exodeoxyribonuclease V, beta subunit [Methylococcus capsulatus str. Bath] Length = 1200 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 68/185 (36%), Gaps = 8/185 (4%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA---WS 90 + A+AG+GKT + LRLLL +L +T T AA AE+ R+ I + Sbjct: 19 LIEASAGTGKTWNICGLYLRLLLEQEREVQNILVVTFTNAATAELRERIRSRIVETLVYL 78 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 +T + D + R L L + TIH FC+ + P Sbjct: 79 RGGGGAADPFVTGLVAALEGGFDRALLRQRLERALLAFDEAAIFTIHGFCQRALAGTPFA 138 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-EDIETLIS 209 A + FA+ + L +E + + +LE +D E +L+ Sbjct: 139 AGLP--FALELVQDDAMLAQEVANDFWRRRVAAGGLS-RAMIAHLLEAGDDPEKYASLLG 195 Query: 210 DIISN 214 ++ Sbjct: 196 HALAK 200 >gi|33440279|ref|ZP_00141864.1| COG0210: Superfamily I DNA and RNA helicases [Pasteuria nishizawae str. North American] Length = 160 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 40/147 (27%) Query: 13 TIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70 D ++ +Q A V A AGSGKT +L RV ++ + A P ++LC+T Sbjct: 11 LQDTLATLNEQQRRAVITTEGPLLVMAGAGSGKTRVLTYRVGHIVASQLAKPWSVLCITF 70 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM HR+ +++ + G Sbjct: 71 TNKAATEMRHRIHALLSGQTT--------------------------------------G 92 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHF 157 + V T H C I++ +F Sbjct: 93 VWVHTFHGLCARILRTDIQHLGYDPYF 119 >gi|327542150|gb|EGF28643.1| ATP-dependent DNA helicase PcrA [Rhodopirellula baltica WH47] Length = 787 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 52/156 (33%), Gaps = 40/156 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T ++ + A GSGKT ++ R+ +L + P + LT T AA EM Sbjct: 9 TAAQAEAVQHIDGPLLIIAGPGSGKTRVVTHRIAYMLRSGIRPWQIAALTFTNKAADEMR 68 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV +L + + T H F Sbjct: 69 SRV----------------------------------------NLLAPNQPVWMGTFHRF 88 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 C ++++ + +++I D SK ++ A S Sbjct: 89 CAQQLRRYAPMVGLAENYSIYDSSDSKSAMKRAIAS 124 >gi|296282686|ref|ZP_06860684.1| DNA and RNA helicase [Citromicrobium bathyomarinum JL354] Length = 769 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 62/186 (33%), Gaps = 42/186 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 ++ + A AG+GKT L R+ L+ A PS +LC+T T AA EM Sbjct: 24 NPPQREAVLTTEGPVLMLAGAGTGKTSALTARLAHLVAMRLAWPSEILCVTFTNKAAREM 83 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV I G + T HA Sbjct: 84 RERVGRHIGDAVE-------------------------------------GMPWLGTFHA 106 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 ++++ + S+F I D + +L+ K+ +A LD + +++ Sbjct: 107 IGAKMLRRHAELVGLQSNFTIIDPDDQLRLL----KTLIAEADLDEKRWPARQLAGLIDR 162 Query: 199 SNDEDI 204 + + Sbjct: 163 WKNRGL 168 >gi|15643994|ref|NP_229043.1| ATP-dependent DNA helicase [Thermotoga maritima MSB8] gi|4981792|gb|AAD36313.1|AE001779_15 ATP-dependent DNA helicase [Thermotoga maritima MSB8] Length = 648 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 39/178 (21%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 + + EQ A + V A GSGKT ++ ++ LL PS +L +T T+ Sbjct: 13 LSFLEDLDEEQRRAVVESEGRCIVIAGPGSGKTRVITYKIAYLLANGVDPSRILLVTFTR 72 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA EM R + + E++++ Sbjct: 73 AAAREMVER-----------AKAVTGRELSEMLA-------------------------- 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 T H C ++++ + +++I D E ++ L+ A+ L + + + Sbjct: 96 -GTFHHVCNHFLRKYAPYVGLERNYSILDREDAESLMRHARSKYLERKSKEERKNFPQ 152 >gi|77456917|ref|YP_346422.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudomonas fluorescens Pf0-1] gi|77380920|gb|ABA72433.1| exodeoxyribonuclease V beta chain [Pseudomonas fluorescens Pf0-1] Length = 1229 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 14/166 (8%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAA 74 LA S + A+AG+GKT + LRL+L + P +L +T T AA Sbjct: 8 ALAFPLKGSQLIEASAGTGKTFTISALYLRLILGHGGEGSGFGRELLPPQILVVTFTDAA 67 Query: 75 AAEMSHRVLEIITAWSHL--SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 E+ R+ + + + + + + + L + Sbjct: 68 TKELRERIRTRLAEAARFFRDETSPPDALIDELRAQFDPQQWPGCANRLDIAAQWMDEAA 127 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 V TIH++C+ ++++ ++ S F E L+ E + Sbjct: 128 VSTIHSWCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWR 171 >gi|73543009|ref|YP_297529.1| ATP-dependent DNA helicase Rep [Ralstonia eutropha JMP134] gi|72120422|gb|AAZ62685.1| ATP-dependent DNA helicase Rep [Ralstonia eutropha JMP134] Length = 704 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 32/157 (20%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 ++ +SE + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNAAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEDKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ +++ + + L + L V Sbjct: 62 AKEMQERIGKLMEGKTTREGKRLPLK-----------------------------QLTVC 92 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++ + F+I D + LI+E Sbjct: 93 TFHSLGVQILRMEAEHVGLKPQFSIMDSDDCFGLIQE 129 >gi|148270656|ref|YP_001245116.1| UvrD/REP helicase [Thermotoga petrophila RKU-1] gi|170289362|ref|YP_001739600.1| UvrD/REP helicase [Thermotoga sp. RQ2] gi|281412966|ref|YP_003347045.1| UvrD/REP helicase [Thermotoga naphthophila RKU-10] gi|147736200|gb|ABQ47540.1| UvrD/REP helicase [Thermotoga petrophila RKU-1] gi|170176865|gb|ACB09917.1| UvrD/REP helicase [Thermotoga sp. RQ2] gi|281374069|gb|ADA67631.1| UvrD/REP helicase [Thermotoga naphthophila RKU-10] Length = 648 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 39/178 (21%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 + + EQ A + V A GSGKT ++ ++ LL PS +L +T T+ Sbjct: 13 LSFLEDLDEEQRKAVVESEGRCIVIAGPGSGKTRVITYKIAYLLANGVDPSRILLVTFTR 72 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAA EM R + + E++++ Sbjct: 73 AAAREMVER-----------AKTVTGRELSEMLA-------------------------- 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 T H C ++++ + +++I D E ++ L+ A+ L + + + Sbjct: 96 -GTFHHVCNYFLRKYAPYVGLERNYSILDREDAESLMRHARSKYLERKSKEERKNFPQ 152 >gi|195953827|ref|YP_002122117.1| UvrD/REP helicase [Hydrogenobaculum sp. Y04AAS1] gi|195933439|gb|ACG58139.1| UvrD/REP helicase [Hydrogenobaculum sp. Y04AAS1] Length = 715 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 75/207 (36%), Gaps = 45/207 (21%) Query: 13 TIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCL 68 DL+ EQ + + V A AGSGKT ++ + L L+ + S LL + Sbjct: 6 LKDLLEGLNEEQRRVVLSNGKPILVVAGAGSGKTKTIIHKALYLIFNQEYKIRGSRLLMI 65 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA E+ R+ + + GK N Sbjct: 66 TFTNKAANEIKERIQKY----------------ASVLGKNINIE---------------- 93 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T H+ I+++ +++ F + DEE S +L + K I D ++L Sbjct: 94 ---WIGTFHSVASRIIRKHHAIFGLSNDFRVLDEEDSVRLFKSILKD--QDIKKDEAKKL 148 Query: 189 KKAFYEILE----ISNDEDIETLISDI 211 A + +E + D + + ++ Sbjct: 149 YIAVNQAIEGIRFLDEDNKFDRKVLEL 175 >gi|194291146|ref|YP_002007053.1| DNA helicase and single-stranded DNA-dependent atpase [Cupriavidus taiwanensis LMG 19424] gi|193224981|emb|CAQ70992.1| DNA helicase and single-stranded DNA-dependent ATPase [Cupriavidus taiwanensis LMG 19424] Length = 698 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 58/157 (36%), Gaps = 32/157 (20%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 ++ +SE + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNPAQSEAVRYLD--GPCLVLAGAGSGKTRVITQKIAHLIEDKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ +++ + + + + L V Sbjct: 62 AKEMQERIAKLMEGKTTREGKRIPLK-----------------------------QLTVC 92 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++ + F+I D + LI+E Sbjct: 93 TFHSLGVQILRMEAEHVGLKPQFSIMDSDDCFGLIQE 129 >gi|157375075|ref|YP_001473675.1| exodeoxyribonuclease V, beta subunit [Shewanella sediminis HAW-EB3] gi|157317449|gb|ABV36547.1| exodeoxyribonuclease V, beta subunit [Shewanella sediminis HAW-EB3] Length = 1251 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 12/157 (7%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANA--HP---STLLCLTHTKAAAAEMSHRVLEI 85 S + A+AG+GKT + +RLLL + P +L +T T AA E+ R+ Sbjct: 40 GGSRLIEASAGTGKTFTIAGLYVRLLLGHEIEKPLSCEQILVVTFTNAATGELRDRIRRK 99 Query: 86 IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I A+ ++ + + +S+ A L L++ + TIH FC+ I+ Sbjct: 100 IQLAYRRFIGLETDDDLIESLYRLTPESERHLALKRLDLALKSLDEASIFTIHGFCQRIL 159 Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLAS 179 E+++ S F + D E + A + Sbjct: 160 ADMAFESSLLFESEFTLDDSE----FLHHAVRDFWRE 192 >gi|114798822|ref|YP_761616.1| putative DNA helicase II [Hyphomonas neptunium ATCC 15444] gi|114738996|gb|ABI77121.1| putative DNA helicase II [Hyphomonas neptunium ATCC 15444] Length = 781 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 71/220 (32%), Gaps = 52/220 (23%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 ++ EQ A V A AG+GKT +L R+ ++ A+PS L +T T Sbjct: 31 YLNGLNPEQRDAVLHTEGPLLVLAGAGTGKTRVLTSRLAHIVATRLAYPSQTLTVTFTNK 90 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R ++ + Sbjct: 91 AAREMRERAQALLGDAGEGLR-------------------------------------WL 113 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H+ I+++ + S F I D + +L K + + LD + Sbjct: 114 GTFHSISAQILRKHAELVGLKSSFTILDTDDQIRL----CKQIVQAENLDPKRWTPRYLA 169 Query: 194 EILEISNDEDI-------ETLISDIISNRTALKLIFFFFS 226 +++ + + E +++ N A+K + + Sbjct: 170 GLIDGWKNRALTPSKVPPEE--AELFGNGKAIKCYEIYQA 207 >gi|47459324|ref|YP_016186.1| ATP-dependent DNA helicase [Mycoplasma mobile 163K] gi|47458654|gb|AAT27975.1| ATP-dependent DNA helicase [Mycoplasma mobile 163K] Length = 723 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 41/166 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTH 70 +D ++ K ++L + A AGSGKT +LV ++ L+ N P +L +T Sbjct: 7 NLLDSLN--KDQKLAVVFNDSPLRIIAGAGSGKTRVLVHKIAYLIQKMNVKPYQILAVTF 64 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++ Sbjct: 65 TNKAANEMKERIKTLVDNHESEPL------------------------------------ 88 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T HA C I+++ +F I D +++ + Sbjct: 89 --ISTFHALCVYILRRDIDVLKYPKNFTILDVADQFDILKNIYEKF 132 >gi|293189192|ref|ZP_06607916.1| UvrD/REP helicase family protein [Actinomyces odontolyticus F0309] gi|292821864|gb|EFF80799.1| UvrD/REP helicase family protein [Actinomyces odontolyticus F0309] Length = 1142 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 31/186 (16%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAA 75 + T + + P R V A AGSGKT + RVL LL + PS++L LT T+ AA Sbjct: 17 TPTPEQVRVIEAPRRPLLVVAGAGSGKTETMSMRVLWLLANHPDLSPSSILGLTFTRKAA 76 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ R+ E I S L + E P L T Sbjct: 77 GELGERLRERIRLLSREMP------------------------QLRERLDEDPVSL---T 109 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 ++F E I+ + + I F++ E + L+ + ++ + D + A +I Sbjct: 110 YNSFAERIVSEHGMRIGIDPDFSMLSEAGALDLMLQIVEAWPTDL--DEDLTPLGAVGQI 167 Query: 196 LEISND 201 L ++ + Sbjct: 168 LHLAGE 173 >gi|50292981|ref|XP_448923.1| hypothetical protein [Candida glabrata CBS 138] gi|49528236|emb|CAG61893.1| unnamed protein product [Candida glabrata] Length = 1088 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 38/158 (24%) Query: 15 DLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 D++ +Q A DPT++ V A G+GKT +L RV L+L P ++ T T Sbjct: 16 DILGGLNQQQRAAVTFDPTKALQVIAGPGTGKTKVLTSRVAYLILHYRIDPRDIIVTTFT 75 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ ++ S +I+ Sbjct: 76 NKAAKEMKDRLAVLLENTEFRSSDIM---------------------------------- 101 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + T H+ C I+ +F + + I DE++ + ++ Sbjct: 102 -IGTFHSICLKILARFGSRVGLQEGWRIVDEKEIEVIM 138 >gi|269798688|ref|YP_003312588.1| UvrD/REP helicase [Veillonella parvula DSM 2008] gi|269095317|gb|ACZ25308.1| UvrD/REP helicase [Veillonella parvula DSM 2008] Length = 862 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 47/212 (22%), Positives = 82/212 (38%), Gaps = 44/212 (20%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 + +Q + + ++ + A+AG+GKT+ L RV L+ A +LC+T T AA EM Sbjct: 4 NREQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGGYAKAENILCMTFTNKAANEM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ ++ + + + V T H+ Sbjct: 64 KGRIQSLVGSPAKAVE--------------------------------------VSTFHS 85 Query: 139 FCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC I+QQ + + I DEE K+L E + L + N + K + + E Sbjct: 86 FCFFILQQEGKRNETLYTDVTIFDEEDCKELSEPYRPGKLREMSFANVIAMVKEYRSLYE 145 Query: 198 ISNDE---DIETLISDI-ISNRTALKLIFFFF 225 +D+ D + I + R A++ F F Sbjct: 146 FYSDDLVGDYKRTIERLQKEQREAIEQQFSSF 177 >gi|297569240|ref|YP_003690584.1| UvrD/REP helicase [Desulfurivibrio alkaliphilus AHT2] gi|296925155|gb|ADH85965.1| UvrD/REP helicase [Desulfurivibrio alkaliphilus AHT2] Length = 760 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 65/167 (38%), Gaps = 39/167 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 +E + ++ + E + A P V A AGSGKT LV R+ L+ P +LL LT Sbjct: 18 AAEALAGLNPAQREAVSA--PAGPILVIAGAGSGKTRTLVHRLAYLVEQGVAPESLLLLT 75 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T+ AA EM +++A HLL + Sbjct: 76 FTRKAAQEM-----------------------------------IARAGHLLPDA--SCR 98 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T HA I++++ ++F I D+ ++ +I K S Sbjct: 99 QVTGGTFHATANLILRRYAAHVGYRANFTILDQGDAEGIINLLKSSL 145 >gi|154509554|ref|ZP_02045196.1| hypothetical protein ACTODO_02086 [Actinomyces odontolyticus ATCC 17982] gi|153799188|gb|EDN81608.1| hypothetical protein ACTODO_02086 [Actinomyces odontolyticus ATCC 17982] Length = 1142 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 33/203 (16%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAA 75 + T + + P R V A AGSGKT + RVL LL + PS++L LT T+ AA Sbjct: 17 TPTHEQVRVIEAPRRPLLVVAGAGSGKTETMSMRVLWLLANHPDLSPSSILGLTFTRKAA 76 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ R+ E I S L + E P L T Sbjct: 77 GELGERLRERIRLLSREMP------------------------QLRERLDEDPVSL---T 109 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 ++F E I+ + + I F++ E + L+ + ++ + D + A +I Sbjct: 110 YNSFAERIVSEHGMRIGIDPDFSMLSEAGALDLMLQIVEAWPTDL--DEDLTPLGAVGQI 167 Query: 196 LEISNDEDIETLISDIISNRTAL 218 L ++ + + S R AL Sbjct: 168 LHLAGEFAEHGYTVE--SAREAL 188 >gi|294141179|ref|YP_003557157.1| exodeoxyribonuclease V subunit beta [Shewanella violacea DSS12] gi|293327648|dbj|BAJ02379.1| exodeoxyribonuclease V, beta subunit [Shewanella violacea DSS12] Length = 1230 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 69/172 (40%), Gaps = 17/172 (9%) Query: 21 KSEQLLASDP-----TRSAWVSANAGSGKTHILVQRVLRLLLANA--HP---STLLCLTH 70 + +Q A D S + A+AG+GKT+ + +RLLL + P +L +T Sbjct: 5 EPKQSQALDTLTLPFGGSRLIEASAGTGKTYTIAGLYVRLLLGHGIDKPLTCQQILVVTF 64 Query: 71 TKAAAAEMSHRVLEIIT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA E+ R+ I A+ H E+ +S A L L++ Sbjct: 65 TNAATGELRDRIRNKIQLAYRHFIGIDTGDELLASLHSATPESARPLALKRLDLALKSLD 124 Query: 130 GLKVQTIHAFCEAIMQQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLAS 179 + TIH FC+ I+ E+++ S F + D E + A + Sbjct: 125 EASIFTIHGFCQRILADMAFESSLLFESEFTLDDSE----YLHHAVRDFWRE 172 >gi|241889348|ref|ZP_04776649.1| putative ATP-dependent deoxyribonuclease subunit A [Gemella haemolysans ATCC 10379] gi|241863891|gb|EER68272.1| putative ATP-dependent deoxyribonuclease subunit A [Gemella haemolysans ATCC 10379] Length = 1217 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 83/221 (37%), Gaps = 37/221 (16%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAA 76 S + + + V+A AGSGKT +L +R+ R + +N LL LT T AAA Sbjct: 17 SYSAPQWQAIAITGADVLVAAAAGSGKTEVLSERIARKVASNRWDIDRLLVLTFTTAAAK 76 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 M R+ I+ + K+ + + K R L+ + TI Sbjct: 77 NMIVRIENKISERLLST------------NKEEDLIYLRKQRMLM-------NDAYISTI 117 Query: 137 HAFCEAIMQQFPLEAN---------ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 +FC ++++F ++ +F+I S+ L+ E + L ++ +++ Sbjct: 118 DSFCLNVLKKFYYLVEEKIDNEIKYLSPNFSIL--ANSRGLLNETVGNVLEELVQEDSNT 175 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYL 228 F N II L I F +YL Sbjct: 176 TDLLFTVFGSKQNISSY------IIDLYYKLLNIPNFQNYL 210 >gi|168069914|ref|XP_001786623.1| predicted protein [Physcomitrella patens subsp. patens] gi|162660850|gb|EDQ48563.1| predicted protein [Physcomitrella patens subsp. patens] Length = 799 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 25/133 (18%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTHTKAAA 75 + + S V+A AGSGKT +LV+R++R +L LL T TKAAA Sbjct: 176 WSDDQWKAISLHGDHILVAAAAGSGKTAVLVERIIRKILNEEQGFSVDRLLVATFTKAAA 235 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ + + + K P + + + LL G + T Sbjct: 236 AEMRERIRDAL---------------DRQLEKDPENTHLRRQLSLL-------GRASITT 273 Query: 136 IHAFCEAIMQQFP 148 +H+FC ++++ Sbjct: 274 LHSFCLEVIRRLY 286 >gi|207738731|ref|YP_002257124.1| atp-dependent dna helicase II protein [Ralstonia solanacearum IPO1609] gi|206592099|emb|CAQ59005.1| atp-dependent dna helicase II protein [Ralstonia solanacearum IPO1609] Length = 691 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 56/165 (33%), Gaps = 31/165 (18%) Query: 21 KSEQLLASDP---------TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 +Q A + T V A AGSGKT L RV L+ A P +L LT + Sbjct: 2 NDQQRQAVEFGVSGADAAETGPLLVLAGAGSGKTQTLGWRVAHLVAHGADPQRILLLTFS 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + AA+E+S R ++ S SA T Q P Sbjct: 62 RRAASELSSRAGHLLARAMQGSTGTRSAAGTTYQTALP---------------------- 99 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++++ + F I D S L+ + Sbjct: 100 WAGTFHGIGARLLREYAERIGLAPDFTIHDRSDSADLLNVVRHEL 144 >gi|148549739|ref|YP_001269841.1| exodeoxyribonuclease V subunit beta [Pseudomonas putida F1] gi|148513797|gb|ABQ80657.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudomonas putida F1] Length = 1224 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 13/159 (8%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT + LRL+L + P +L +T T AA E+ R+ Sbjct: 15 GSQLIEASAGTGKTFTISALYLRLILGHGGEQGFERELLPPQILVVTFTDAATKELRERI 74 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFC 140 + + L + + + + + L ++ V TIH +C Sbjct: 75 RARLAEAARFFRGELEGADPLLHQLRDDYPQETWLRCAGRLEIAVQWMDEAAVSTIHGWC 134 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 + ++++ ++ S F E +L+ + + Sbjct: 135 QRMLREHAFDSG--SLFTQTLETDHSELLGQVMRDYWRR 171 >gi|28868005|ref|NP_790624.1| exodeoxyribonuclease V subunit beta [Pseudomonas syringae pv. tomato str. DC3000] gi|28851241|gb|AAO54319.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tomato str. DC3000] Length = 1230 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGSEQSGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSA--EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + + A E+ ++ L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEICAPDELISQLREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|300721421|ref|YP_003710692.1| Rep helicase, a single-stranded DNA-dependent ATPase [Xenorhabdus nematophila ATCC 19061] gi|297627909|emb|CBJ88455.1| Rep helicase, a single-stranded DNA-dependent ATPase [Xenorhabdus nematophila ATCC 19061] Length = 676 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 63/183 (34%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ A + +T T AA EM Sbjct: 4 NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRACGYQARHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + GL + T H Sbjct: 64 KERVAQTLGRKETK-------------------------------------GLMISTFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + S+F++ D++ L+++ L ++ + L+K I Sbjct: 87 LGLEIIKREYQALGMKSNFSLFDDQDQMALLKDLTADLLE----EDKDLLQKLISSISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|297243751|ref|ZP_06927681.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella vaginalis AMD] gi|296888172|gb|EFH26914.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella vaginalis AMD] Length = 1417 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 74/193 (38%), Gaps = 36/193 (18%) Query: 22 SEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 + P ++ + A AGSGKT+ + +RV+ L+ P ++L LT T AA+E+ Sbjct: 18 EQAAAIQAPTNKNMIIVAGAGSGKTYTMTRRVIDLIERGVAPESILGLTFTNKAASELLA 77 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 RV + ++ S +++++ + V T AF Sbjct: 78 RVAQAVSQHSSEINKLINNGNSASSSGFLKPE--------------------VMTYDAFF 117 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 ++I++Q+ L + + +++LI+ EI + Sbjct: 118 QSIVRQYGLLVGFDQNTQPLSDAGARELIKPLVNDY---------------VTNHAEILS 162 Query: 201 DEDIETLISDIIS 213 + LI D+++ Sbjct: 163 WYSFDALIDDVLA 175 >gi|291454013|ref|ZP_06593403.1| ATP-dependent DNA helicase [Streptomyces albus J1074] gi|291356962|gb|EFE83864.1| ATP-dependent DNA helicase [Streptomyces albus J1074] Length = 1201 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 66/182 (36%), Gaps = 24/182 (13%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T A Sbjct: 26 GIPFTPEQMACVTAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 85 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E++ RV + +T E L+ Q + TPG + Sbjct: 86 AGELAERVRKALTEAGVTEPEPLAPPGAGPQDE------------------HTPGEPVIS 127 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HAF ++ L + + + +L + + L ++F + Sbjct: 128 TYHAFAGRLLTDHGLRLGLEPSTRLLADATRFQLAARVLRE-----APGAHPALTRSFPD 182 Query: 195 IL 196 ++ Sbjct: 183 LV 184 >gi|160933076|ref|ZP_02080465.1| hypothetical protein CLOLEP_01918 [Clostridium leptum DSM 753] gi|156868150|gb|EDO61522.1| hypothetical protein CLOLEP_01918 [Clostridium leptum DSM 753] Length = 740 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 40/169 (23%) Query: 10 HSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 S + + + QL A + A AGSGKT +L+ R+ ++ + A P +L Sbjct: 1 MSTMQEKLKKMNPRQLEAVLHTEGPLLILAGAGSGKTTVLINRIAYIIDQSLAKPWQILA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA E+ R+ ++ +T Sbjct: 61 ITFTNKAAGELKERLTAMLG--------------------------------------DT 82 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G + T H+ C I+++ +SHF + D + SK+L+++ +K+ Sbjct: 83 GGDVWAATFHSTCARILRRDGDRIGYSSHFTVYDTDDSKRLVKDCQKAL 131 >gi|327398224|ref|YP_004339093.1| UvrD/REP helicase [Hippea maritima DSM 10411] gi|327180853|gb|AEA33034.1| UvrD/REP helicase [Hippea maritima DSM 10411] Length = 1025 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 35/170 (20%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLA-----------------------NAHPSTLLCLT 69 + + A+AGSGKT+ L +R L +L +++ +T Sbjct: 11 NLSIEASAGSGKTYRLAERFLLMLTEYLKSKATLKSLKFCGGNQETCQTPTSIDSIIAIT 70 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AAAEM RV+ + + + K D + LL+ I+E Sbjct: 71 FTNKAAAEMKERVISFLKCLAGI----------KSDNVPDVGLDKDSSFKLLVEIVEKFS 120 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 + TI +F I++ F + NI + I + + + +EA ++ +A Sbjct: 121 DFHITTIDSFMNRILKAFAADLNIHPDYEITFDRDT--IFDEAFETLVAD 168 >gi|291280321|ref|YP_003497156.1| ATP-dependent DNA helicase PcrA [Deferribacter desulfuricans SSM1] gi|290755023|dbj|BAI81400.1| ATP-dependent DNA helicase PcrA [Deferribacter desulfuricans SSM1] Length = 683 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 68/192 (35%), Gaps = 44/192 (22%) Query: 13 TIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70 I L+ Q A + V + AG+GKT ++ ++ L+ A P + +T Sbjct: 1 MISLLENLNESQKEAVEYIDSPLLVLSGAGTGKTRVITYKIAYLIKKKIAQPERIFAVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R+ ++I S Sbjct: 61 TNKAADEMKKRIYDLIGEKSF--------------------------------------D 82 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + + T H+ I+++ + S+F I D++ LI ++ L + +D+ + K Sbjct: 83 IWLGTFHSNALRILRRDGHLLGLPSNFTIIDQDDRLALI----RNILKRVGIDDKKYPPK 138 Query: 191 AFYEILEISNDE 202 + I+ + Sbjct: 139 MYLNIISNYKNS 150 >gi|288941210|ref|YP_003443450.1| UvrD/REP helicase [Allochromatium vinosum DSM 180] gi|288896582|gb|ADC62418.1| UvrD/REP helicase [Allochromatium vinosum DSM 180] Length = 669 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 68/201 (33%), Gaps = 39/201 (19%) Query: 17 ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 +++ QL A V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 1 MAELNPRQLDAVHYTAGPLLVLAGAGSGKTRVITQKIAHLIEQIGLAPRHIRAVTFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV + GL + Sbjct: 61 AREMRERVSHQLKGTQTR-------------------------------------GLAIS 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H I+++ P A + S FA+ D + ++ L++E + + L + Sbjct: 84 TFHRLGLEILRRHPEAAGLHSGFALLDAQDAESLLKEGLRGLAEADALSPGAVQHRISRW 143 Query: 195 ILEISNDEDIETLISDIISNR 215 ++ + E L D R Sbjct: 144 KNDLVDPERAAQLAEDAFEAR 164 >gi|154244726|ref|YP_001415684.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] gi|154158811|gb|ABS66027.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] Length = 1143 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 38/154 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 S+ A+ + A G+GKT LV+RVL LL P+ +L LT + AA E+S Sbjct: 202 DPSQDRAAAHRDTPFQLQAGPGTGKTRTLVKRVLSLLADGIDPAAILVLTFSNRAAGELS 261 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R L+ + L + T HAF Sbjct: 262 ER--------------------------------------LIAAAPDAAPKLWIGTFHAF 283 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 +++++ + +T + A+ D + ++EE Sbjct: 284 GLDLVRRYHDKLGLTPNPALFDRSDAIAVLEEIL 317 >gi|331019804|gb|EGH99860.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 1230 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGSEQSGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSA--EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + + A E+ ++ L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEICAPDELISQLREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|146307014|ref|YP_001187479.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudomonas mendocina ymp] gi|145575215|gb|ABP84747.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudomonas mendocina ymp] Length = 1209 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 63/158 (39%), Gaps = 12/158 (7%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT + LRL+L + P +L +T T AA E+ R+ Sbjct: 15 GSRLIEASAGTGKTFTISALYLRLILGHGGDAAFREPLLPPQILVVTFTDAATRELRDRI 74 Query: 83 LEIITAWSHL-SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + + + + ++ + ++ + L + V TIH +C+ Sbjct: 75 RARLVEAATVFRGDAQGDDLLRELRSDFAQTQWDECARRLELAAQWMDEAAVSTIHGWCQ 134 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 ++++ ++ S F+ E +L+ E + Sbjct: 135 RMLREHAFDSG--SLFSQTLETDHSELLAEVVRDYWRQ 170 >gi|330967151|gb|EGH67411.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. actinidiae str. M302091] Length = 1230 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGSEQSGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSA--EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + +SA ++ ++ L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEISAPDDLINELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|300870941|ref|YP_003785812.1| ATP-dependent DNA helicase [Brachyspira pilosicoli 95/1000] gi|300688640|gb|ADK31311.1| ATP-dependent DNA helicase [Brachyspira pilosicoli 95/1000] Length = 666 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 40/169 (23%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66 + ++ ++ +++ + E +L D + A AGSGKT ++ +++ L+ + P ++ Sbjct: 4 NKQNDLLNGLNENQKEGVLHID--SPLLLLAGAGSGKTLVITKKIAYLITEKHIRPENIM 61 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM RV ++ Sbjct: 62 AVTFTNKAANEMKERVCSMLPEIK------------------------------------ 85 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 P L ++T H+ C I++ N F I DE +I++ K Sbjct: 86 -PFRLFIRTFHSACLRILKDNAQYLNYREDFLILDEGDRLSVIKKIMKE 133 >gi|239982165|ref|ZP_04704689.1| ATP-dependent DNA helicase [Streptomyces albus J1074] Length = 1191 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 66/182 (36%), Gaps = 24/182 (13%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T A Sbjct: 16 GIPFTPEQMACVTAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 75 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E++ RV + +T E L+ Q + TPG + Sbjct: 76 AGELAERVRKALTEAGVTEPEPLAPPGAGPQDE------------------HTPGEPVIS 117 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HAF ++ L + + + +L + + L ++F + Sbjct: 118 TYHAFAGRLLTDHGLRLGLEPSTRLLADATRFQLAARVLRE-----APGAHPALTRSFPD 172 Query: 195 IL 196 ++ Sbjct: 173 LV 174 >gi|254559023|ref|YP_003066118.1| ATP-dependent DNA helicase [Methylobacterium extorquens DM4] gi|254266301|emb|CAX22062.1| putative ATP-dependent DNA helicase [Methylobacterium extorquens DM4] Length = 1139 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 41/188 (21%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 ++ S+ + + A G+GKT L++RV L+ P+++L LT + AA Sbjct: 193 LTPDPSQDAAVAHRGSPYLLQAGPGTGKTRTLIRRVTSLIDEGIDPNSILVLTFSNKAAG 252 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R L ++ E + + T Sbjct: 253 ELMDR--------------------------------------LALSHPEAAASVWIGTF 274 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML---DNNEELKKAFY 193 HAF I+++F + + D+ + ++EE + D E L + Sbjct: 275 HAFGLDIVRRFHDRLGLPPGPRLVDKATAITMLEEVVPTLDLDHYRDLWDPEENLSEILA 334 Query: 194 EILEISND 201 I ++ Sbjct: 335 AISRAKDE 342 >gi|238018443|ref|ZP_04598869.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748] gi|237864914|gb|EEP66204.1| hypothetical protein VEIDISOL_00270 [Veillonella dispar ATCC 17748] Length = 862 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 40/185 (21%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 + +Q + + ++ + A+AG+GKT+ L RV L+ A +LC+T T AA EM Sbjct: 4 NREQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGGYAKAENILCMTFTNKAANEM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ ++ + + + + T H+ Sbjct: 64 KDRIQSLVGSPAKAVE--------------------------------------ISTFHS 85 Query: 139 FCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC ++QQ + + I DEE K+L E + L + N + K + + Sbjct: 86 FCFFVLQQEGKRNETLYTDVTIFDEEDCKELSEPYRPGKLREMSFANIIGMVKEYRSLYG 145 Query: 198 ISNDE 202 +D+ Sbjct: 146 FYSDD 150 >gi|89076421|ref|ZP_01162746.1| putative exodeoxyribonuclease V [Photobacterium sp. SKA34] gi|89047889|gb|EAR53482.1| putative exodeoxyribonuclease V [Photobacterium sp. SKA34] Length = 1203 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 15/166 (9%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA----------HPSTLLC 67 +QT Q +A + + A+AG+GKT +V LRLLL + +L Sbjct: 5 TQTNILQPMAFPLHGTRLIEASAGTGKTFTIVSLYLRLLLGHGNDDCAHLKPLDVDQILV 64 Query: 68 LTHTKAAAAEMSHRVLEIITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 +T T+AA AE+ R+ + I S E + I + D A +L Sbjct: 65 VTFTEAATAELRDRIRKGIRDAYVSFSRGESVGPFKDTISALLNDIHDHKYAARVLKDAE 124 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEAN--ITSHFAIADEEQSKKLI 169 V TIH FC+ ++ Q E+ + F + DE Q K L+ Sbjct: 125 RRMDEASVYTIHGFCQRMLTQNAFESGCRFNNEF-VTDESQLKNLV 169 >gi|83592871|ref|YP_426623.1| ATP-dependent DNA helicase Rep [Rhodospirillum rubrum ATCC 11170] gi|83575785|gb|ABC22336.1| ATP-dependent DNA helicase, Rep family [Rhodospirillum rubrum ATCC 11170] Length = 768 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 66/190 (34%), Gaps = 43/190 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L ++ + V + AG+GKT +L R+ ++L P +L +T T A Sbjct: 25 LAGLNPEQRAAVTTTDGPVLVLSGAGTGKTRVLTARLAQILATRPVRPWQVLAVTFTNRA 84 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R +I + + + Sbjct: 85 AREMRERAGAMIGPMAE--------------------------------------QVWLG 106 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HA ++++ + S F I D + +L+++ L + +D + +A Sbjct: 107 TFHALGVRMLRRHGDLVGLRSGFTILDADDQLRLLKQ----ILEAEGIDTKKWTPQAGMG 162 Query: 195 ILEISNDEDI 204 +++ D+ + Sbjct: 163 LIQRWKDKGL 172 >gi|329894920|ref|ZP_08270719.1| UvrD/REP helicase family protein [gamma proteobacterium IMCC3088] gi|328922649|gb|EGG29984.1| UvrD/REP helicase family protein [gamma proteobacterium IMCC3088] Length = 1097 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 6/204 (2%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 + ++ A DPT S V A AGSGKT +LVQR+L LL +HP ++ +T T+ AAAEM Sbjct: 3 DQVQRDRAIDPTASCCVVAPAGSGKTSLLVQRMLALLARVSHPEQIVAITFTRKAAAEMR 62 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + + + + E ++ + K +S A ++ E L+ TI +F Sbjct: 63 A-RMAEVFELAQVKQLSEVPEYERVSLEL-AKHALSNASERGWSLPEQLERLQFMTIDSF 120 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C ++++Q PL + + A E L A L S E L + Sbjct: 121 CASLVRQMPLASRMGGVMTPA--EPVADLYRAAVLDLLQSSEPQIREHLPPILAALGNRW 178 Query: 200 NDEDIETLISDIISNRTALKLIFF 223 D I+ L S++++ R +L F Sbjct: 179 -DSAIDWL-SELLTKRDQWQLALF 200 >gi|32477472|ref|NP_870466.1| ATP-dependent DNA helicase [Rhodopirellula baltica SH 1] gi|32448023|emb|CAD77543.1| ATP-dependent DNA helicase [Rhodopirellula baltica SH 1] Length = 787 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 51/154 (33%), Gaps = 40/154 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T ++ + A GSGKT ++ R+ +L + P + LT T AA EM Sbjct: 9 TAAQAEAVQHIDGPLLIIAGPGSGKTRVVTHRIAYMLQSGIRPWQIAALTFTNKAADEMR 68 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV +L + + T H F Sbjct: 69 SRV----------------------------------------NLLAPNQPVWMGTFHRF 88 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 C ++++ + +++I D SK ++ A Sbjct: 89 CAQQLRRYAPMVGLAENYSIYDSSDSKSAMKRAI 122 >gi|294660411|ref|NP_853162.2| DNA helicase II [Mycoplasma gallisepticum str. R(low)] gi|284812070|gb|AAP56730.2| DNA helicase II [Mycoplasma gallisepticum str. R(low)] gi|284930644|gb|ADC30583.1| DNA helicase II [Mycoplasma gallisepticum str. R(high)] Length = 751 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 75/203 (36%), Gaps = 44/203 (21%) Query: 15 DLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72 D + +Q + + +V A AG+GKT +L R+ L+ P +L +T T Sbjct: 3 DYLKSLNKQQYDVVTSDLIPIFVVAGAGTGKTKVLTSRIAYLIEHFKIPEYKILAITFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM HR+ +++ + Sbjct: 63 KAAKEMQHRLEKLLNKEKT--------------------------------------QVS 84 Query: 133 VQTIHAFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 +T H FC ++++ + + F I DE KLIE+ KS + KK Sbjct: 85 FRTFHGFCAQVLREEVNNVDRLNDRFNILDEVDQAKLIEDLLKSQKYEYYYSQYTDFKK- 143 Query: 192 FYEILEISNDEDIETL-ISDIIS 213 +++ I ND L +++ ++ Sbjct: 144 -NKVMSIINDAKTYNLDVAEFLA 165 >gi|171912577|ref|ZP_02928047.1| probable helicase [Verrucomicrobium spinosum DSM 4136] Length = 1067 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 19/169 (11%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 ++ + A+AG+GKTH LVQR L LL A P + +T T+ AA E R+L+ + S Sbjct: 5 KNELIRASAGTGKTHSLVQRYLWLLEHGAEPERIAAMTFTRKAAGEFFERILQELATRSM 64 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 + L LL ++ L++ TI +F + Q P E Sbjct: 65 KAGGGLPL-------------------TLLRKVVRRMDQLRLGTIDSFFATMTQCLPFEL 105 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +T A+ E ++ + EE S L +I N+ E + ++ Sbjct: 106 GLTGKAALMSEAEATRAEEEVMDSLLLAIGRMNDAAALDELREAWKAAS 154 >gi|284931444|gb|ADC31382.1| DNA helicase II [Mycoplasma gallisepticum str. F] Length = 751 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 71/196 (36%), Gaps = 43/196 (21%) Query: 15 DLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHTK 72 D + +Q + + +V A AG+GKT +L R+ L+ P +L +T T Sbjct: 3 DYLKSLNKQQYDVVTSDLIPIFVVAGAGTGKTKVLTSRIAYLIEHFKIPEYKILAITFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM HR+ +++ D K + Sbjct: 63 KAAKEMQHRLEKLL--------------------------DKEKTQVSFR---------- 86 Query: 133 VQTIHAFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 T H FC ++++ + + F I DE KLIE+ KS + KK Sbjct: 87 --TFHGFCAQVLREEVNNVDRLNDRFNILDEVDQAKLIEDLLKSQKYEYYYSQYTDFKK- 143 Query: 192 FYEILEISNDEDIETL 207 +++ I ND L Sbjct: 144 -NKVMSIINDAKTYNL 158 >gi|114769364|ref|ZP_01446990.1| Putative uvrD/DNA Helicase II [alpha proteobacterium HTCC2255] gi|114550281|gb|EAU53162.1| Putative uvrD/DNA Helicase II [alpha proteobacterium HTCC2255] Length = 800 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 39/151 (25%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 + S Q A + + A AG+GKT L R++ L+ + A P+ +L +T T Sbjct: 30 YLEDLNSAQRSAVETLNGPVLMLAGAGTGKTKALTTRIVHLMNMNQAWPNEILAVTFTNK 89 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++ + Sbjct: 90 AAREMKSRVGAMLGNVGDGLP-------------------------------------WL 112 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQ 164 T H+ C I+++ + S+F I D + Sbjct: 113 GTFHSLCVKILRRHSEIVGLKSNFTILDTDD 143 >gi|317494805|ref|ZP_07953216.1| ATP-dependent DNA helicase Rep [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917130|gb|EFV38478.1| ATP-dependent DNA helicase Rep [Enterobacteriaceae bacterium 9_2_54FAA] Length = 674 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 69/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D++ L+ + + L + + LK+ I ND Sbjct: 90 EIIKREYKALGMKANFSLFDDQDQLALLTDLTEQWLEK----DKDLLKQLISTISNWKND 145 Query: 202 E-DIETLISDIISNRTAL 218 D + + S R + Sbjct: 146 LIDPQQAATHAFSERDKI 163 >gi|90580937|ref|ZP_01236738.1| putative exodeoxyribonuclease V [Vibrio angustum S14] gi|90437815|gb|EAS63005.1| putative exodeoxyribonuclease V [Vibrio angustum S14] Length = 1203 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 15/166 (9%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA----------HPSTLLC 67 +QT Q +A + + A+AG+GKT +V LRLLL + +L Sbjct: 5 TQTNILQPMAFPLHGTRLIEASAGTGKTFTIVSLYLRLLLGHGNDDCAHLKPLDVDQILV 64 Query: 68 LTHTKAAAAEMSHRVLEIITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 +T T+AA AE+ R+ + I S E + I + D A +L Sbjct: 65 VTFTEAATAELRDRIRKGIRDAYVSFSRGESVGPFKDTISALLNDIHDHKYAARVLKDAE 124 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEAN--ITSHFAIADEEQSKKLI 169 V TIH FC+ ++ Q E+ + F + DE Q K L+ Sbjct: 125 RRMDEASVYTIHGFCQRMLTQNAFESGCRFNNEF-VTDESQLKNLV 169 >gi|312884293|ref|ZP_07744002.1| exodeoxyribonuclease V beta chain [Vibrio caribbenthicus ATCC BAA-2122] gi|309368066|gb|EFP95609.1| exodeoxyribonuclease V beta chain [Vibrio caribbenthicus ATCC BAA-2122] Length = 1204 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 13/161 (8%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHR 81 S + A+AG+GKT + LRLLL + +L +T T+AA AE+ R Sbjct: 20 GSRLIEASAGTGKTFTIAGLYLRLLLGHGSSSTRHASPLTVDQILVVTFTEAATAELKDR 79 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + I + + L+ ++ I + D A +L+ + TIH FC+ Sbjct: 80 IRSRIHS-ARLAFSRGESDDPVIAPLLTDIQDHQAASEILLQAERQIDEAAIFTIHGFCQ 138 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 +++Q E+ S F ++ + Sbjct: 139 RVLKQNAFESG--SRFQNEFITDETRIKAQVVADYWRQHFY 177 >gi|331644512|ref|ZP_08345632.1| ATP-dependent DNA helicase Rep [Escherichia coli H736] gi|331036184|gb|EGI08419.1| ATP-dependent DNA helicase Rep [Escherichia coli H736] Length = 690 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 24 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 83 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 84 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 106 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 107 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 162 Query: 202 -EDIETLISDIISNRTAL 218 + + I R + Sbjct: 163 LKTPSQAAASAIGERDRI 180 >gi|296269401|ref|YP_003652033.1| UvrD/REP helicase [Thermobispora bispora DSM 43833] gi|296092188|gb|ADG88140.1| UvrD/REP helicase [Thermobispora bispora DSM 43833] Length = 1089 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 55/212 (25%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71 +D + + +D + A G+GKT L R+ L+ P L +T T Sbjct: 494 LLDGLDPDQRAAAEITD--GPLLIIAGPGTGKTRTLTHRIAHLVTGRGVPPEQCLAITFT 551 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + AA EM R+ ++ + + Sbjct: 552 RRAAEEMRERLTALVP--------------------------------------DQAPRV 573 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIA--------------DEEQSKKLIEEAKKSTL 177 V T H+ I+++ A ++ F IA DE+++++L+ + Sbjct: 574 TVATFHSLGLQILREQHERAGLSPSFGIADHARQLAVATEVTGDEKEARRLLAALSRHRR 633 Query: 178 ASIMLDNNEELKKAFYEILEISNDEDIETLIS 209 E + + + L + D + LI Sbjct: 634 TGEGGPEQAEFAERYGKALRGQDLVDFDDLIE 665 >gi|194434624|ref|ZP_03066880.1| ATP-dependent DNA helicase Rep [Shigella dysenteriae 1012] gi|194417143|gb|EDX33256.1| ATP-dependent DNA helicase Rep [Shigella dysenteriae 1012] Length = 690 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 24 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 83 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 84 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 106 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 107 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 162 Query: 202 -EDIETLISDIISNRTAL 218 + + I R + Sbjct: 163 LKTPSQAAASAIGERDRI 180 >gi|300312090|ref|YP_003776182.1| ATP-dependent DNA helicase [Herbaspirillum seropedicae SmR1] gi|300074875|gb|ADJ64274.1| ATP-dependent DNA helicase protein [Herbaspirillum seropedicae SmR1] Length = 707 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 67/171 (39%), Gaps = 39/171 (22%) Query: 15 DLISQTKSEQLLASDPTR--------SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66 D ++ ++Q A + + A AGSGKT+ L RV RL+L A P +L Sbjct: 21 DPFARLNAQQREAVEHGGKLPPSQQPPLLIVAGAGSGKTNTLAHRVARLVLEGADPQRIL 80 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 L+ ++ AAA+M RV ++I A+ L + + Sbjct: 81 LLSFSRRAAADMGRRVGQVI------------------------------AQVLGLAASD 110 Query: 127 TPGGL-KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 TP L T HA +++++ + F I D S+ L+ + Sbjct: 111 TPPQLHWSGTFHAIGARLLREYAKVIGLEEDFTIQDRGDSEDLMGLLRHDM 161 >gi|62184654|ref|YP_219439.1| putative UvrD/REP helicase [Chlamydophila abortus S26/3] gi|62147721|emb|CAH63465.1| putative UvrD/REP helicase [Chlamydophila abortus S26/3] Length = 1045 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 47/205 (22%), Positives = 80/205 (39%), Gaps = 24/205 (11%) Query: 27 ASDPTRSA----WVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSH 80 P S ++ A+AG+GKT + Q VLR LL + H +L +T T AA E+ Sbjct: 6 IFHPQTSIQGKYFLEASAGTGKTFTIEQIVLRALLEGSVSHVENILIVTFTNAATNELKL 65 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ E + ++ + + D+ + L T + + TIH FC Sbjct: 66 RISENLKQAGAQLKSAITDPEQPLPPYLHHPCDVKLLYMQVRNALATIDRMAIFTIHGFC 125 Query: 141 EAIMQQFPLEANITSHFAIADEEQS------KKLIEEAKKSTLASIMLDNNEELKKAFYE 194 ++QQ E I+ + Q+ K L ++ ++ L + FY Sbjct: 126 NYVLQQHFPEIQISQKNSALTHSQAVLHHIRKYLSQDLWENIL----------FPEQFYL 175 Query: 195 ILEISNDEDIET--LISDIISNRTA 217 + N T L ++S+ TA Sbjct: 176 LAARYNSHGKHTSFLTDKLLSSYTA 200 >gi|150377933|ref|YP_001314528.1| UvrD/REP helicase [Sinorhizobium medicae WSM419] gi|150032480|gb|ABR64595.1| UvrD/REP helicase [Sinorhizobium medicae WSM419] Length = 689 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 61/173 (35%), Gaps = 35/173 (20%) Query: 10 HSETIDLISQTKSEQLL------ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63 + ++ ++ + E + +S+ + A AGSGKT+ L RV L++ A P Sbjct: 2 NPAYLEKLNDRQREAVEHGIGRPSSEIGGPLLIIAGAGSGKTNTLAHRVAHLIVNGADPR 61 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L +T ++ AA EM+ RV I + +T Sbjct: 62 RILLMTFSRRAAYEMTRRVKSICRQVLGNQAAAIGDALT--------------------- 100 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H +++ + + + F I D E + L+ + Sbjct: 101 --------WAGTFHGIGARLLRIYAEQIGVNVDFTIHDREDAADLMNLIRHEL 145 >gi|330807373|ref|YP_004351835.1| Exodeoxyribonuclease V, beta subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375481|gb|AEA66831.1| Exodeoxyribonuclease V, beta subunit [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 1229 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 65/166 (39%), Gaps = 14/166 (8%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAA 74 LA S + A+AG+GKT + LRL+L + P +L +T T AA Sbjct: 8 ALAFPLHGSQLIEASAGTGKTFTISALYLRLVLGHGGSASGFGRELLPPQILVVTFTDAA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP--NKSDMSKARHLLITILETPGGLK 132 E+ R+ + + + + A + I + N + L + Sbjct: 68 TKELRERIRTRLAEAARFFRDEIPAPDSLIVALRDEFNADQWPGCANRLDIAAQWMDEAA 127 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 V TIH++C+ ++++ ++ S F E +L+ E + Sbjct: 128 VSTIHSWCQRMLREHAFDSG--SLFTQTLETDHSELLGEVLRDYWR 171 >gi|330503685|ref|YP_004380554.1| DNA helicase/exodeoxyribonuclease V subunit beta [Pseudomonas mendocina NK-01] gi|328917971|gb|AEB58802.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudomonas mendocina NK-01] Length = 1209 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 63/158 (39%), Gaps = 12/158 (7%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT + LRL+L + P +L +T T AA E+ R+ Sbjct: 15 GSRLIEASAGTGKTFTISALYLRLILGHGGDAAFCEALLPPQILVVTFTDAATRELRDRI 74 Query: 83 LEIITAWSHL-SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + + + + ++ + ++ + L + V TIH +C+ Sbjct: 75 RARLVEAATVFRGDAQGDDLLRELRGDFAQTQWDECARRLELAAQWMDEAAVSTIHGWCQ 134 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 ++++ ++ S F+ E +L+ E + Sbjct: 135 RMLREHAFDSG--SLFSQTLETDHSELLAEVVRDYWRQ 170 >gi|206890945|ref|YP_002248960.1| UvrD/REP helicase domain protein, putative [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742883|gb|ACI21940.1| UvrD/REP helicase domain protein, putative [Thermodesulfovibrio yellowstonii DSM 11347] Length = 1015 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 81/171 (47%), Gaps = 10/171 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPS----TLLCLTHTKAAAAEMSHRVLEIITAW 89 + A+AGSGKT L +R + LL++ P+ +L +T + A+ EM R++E + Sbjct: 13 IILKASAGSGKTTALTERFVYFLLSDDIPNNSLKNILAITFSNNASYEMKDRIIEWLKNL 72 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + L+ ++++ P + + KA +L IL +V+TI +F ++ + + Sbjct: 73 YCKEENSLN-RLSELLSLSPEELSL-KAGQILDEILNNYSDFQVKTIDSFMTSVFKASAI 130 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 + + F I QS L++ + L I + N F ++++I + Sbjct: 131 DFDYNPDFEILMNNQS--LMQYSYDLFLKDI--EENSIKADFFEKVIKIIS 177 >gi|167753572|ref|ZP_02425699.1| hypothetical protein ALIPUT_01849 [Alistipes putredinis DSM 17216] gi|167658197|gb|EDS02327.1| hypothetical protein ALIPUT_01849 [Alistipes putredinis DSM 17216] Length = 1053 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 76/183 (41%), Gaps = 6/183 (3%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEMSHRVLEIITAWS 90 R+ ++A+AGSGKT+ L + +R ++ +L +T T A EM R+L I + Sbjct: 2 RARILNASAGSGKTYQLAYKYVRDVVEQPTLYRHILAVTFTNKATEEMRSRILSEIHTLA 61 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 A + ++ ++AR IL + TI F + I++ F E Sbjct: 62 SGGKSGYLASLCAELSLD-ERTVRTRAREARTRILHDYSRFTILTIDTFFQRILRAFIQE 120 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN--EELKKAFYEILEISNDEDIETLI 208 + ++ + E ++ ++ ++ + + I +D L E +E D+ I Sbjct: 121 LGLDLNYNV--EIETASVLSKSADALVEQIRIDEELQRWLTAFVQERIEDGKRWDVREGI 178 Query: 209 SDI 211 + Sbjct: 179 LAL 181 >gi|260911842|ref|ZP_05918409.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260634053|gb|EEX52176.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 1074 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 63/145 (43%), Gaps = 4/145 (2%) Query: 38 ANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEII-TAWSHLSDE 95 A+AGSGKT L +++LL N H +L +T T A EM R+L + W L Sbjct: 10 ASAGSGKTFTLAVNYIKILLRNPHSYRNILAVTFTNKATEEMKLRILSQLYGIWKLLPSS 69 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + + + +A L +L +V+TI F +A+++ E ++T+ Sbjct: 70 KGYLDKVTSELDITPEYASQQAGAALSNLLHNYNYFRVETIDTFFQAVLRNLARELDLTA 129 Query: 156 HFAIADEEQSKKLIEEAKKSTLASI 180 + + + + ++A + + Sbjct: 130 NLHVGLNDSQVE--QQAVDKLIEEL 152 >gi|50365383|ref|YP_053808.1| repair endonuclease ATP-dependent DNA helicase [Mesoplasma florum L1] gi|50363939|gb|AAT75924.1| repair endonuclease ATP-dependent DNA helicase [Mesoplasma florum L1] Length = 723 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 62/206 (30%), Gaps = 51/206 (24%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVL 83 + + + A AGSGKT ++ ++ L+ P +L +T T AA EM RV Sbjct: 14 AAVTITDKPLRIVAGAGSGKTKVITTKIAYLIEELKMAPYKILAVTFTNKAAREMRDRVT 73 Query: 84 EIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 +II + T HA+C + Sbjct: 74 KIIPDLKSNP--------------------------------------HISTFHAWCSRV 95 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-- 201 +++ + +F I D+ ++ + + KK Y I ND Sbjct: 96 LREDFELVGLNKNFLIIDQGDQIAILRSLINEHFSHLPELKKYTEKKIIYRIGNWKNDLT 155 Query: 202 ----------EDIETLISDIISNRTA 217 IE I+ + Sbjct: 156 SPLEATEECYSGIERAIATLYQKYED 181 >gi|242237657|ref|YP_002985838.1| ATP-dependent DNA helicase Rep [Dickeya dadantii Ech703] gi|242129714|gb|ACS84016.1| ATP-dependent DNA helicase Rep [Dickeya dadantii Ech703] Length = 674 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 43/201 (21%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q + V A AGSGKT ++ Q++ L+ + +T T AA EM Sbjct: 4 NASQQHAVESVSGPCLVLAGAGSGKTRVITQKIAYLIRTCGYQARHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + GL + T H Sbjct: 64 KERVAQTLGRKETR-------------------------------------GLMIATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ L + S+F++ D++ L++E + L ++ + L++ I Sbjct: 87 LGLEIIKREYLALGMKSNFSLFDDQDQLALLKELTEQWLQ----NDKDLLQQLISAISNW 142 Query: 199 SNDE-DIETLISDIISNRTAL 218 ND E + S R L Sbjct: 143 KNDLMGPEQAMGMARSERDRL 163 >gi|323964026|gb|EGB59516.1| ATP-dependent DNA helicase Rep [Escherichia coli M863] gi|327250630|gb|EGE62336.1| ATP-dependent DNA helicase Rep [Escherichia coli STEC_7v] Length = 673 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 69/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + ++ + R + Sbjct: 146 LKTPAQAAAEAMGERDRI 163 >gi|302869750|ref|YP_003838387.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029] gi|302572609|gb|ADL48811.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029] Length = 1134 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 91/255 (35%), Gaps = 49/255 (19%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E + + L + T+ + + + P V A AGSGKT + RV+ L+ + P +L Sbjct: 29 ELARLLRLPAPTREQAAIIAAPVEPLLVVAGAGSGKTETMAARVMWLVANSYVRPEHILG 88 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T+ AA E++HRV + QG+ P+ ++ Sbjct: 89 LTFTRKAAGELAHRVRTRLDQLIRRLGR---------QGRDPHDDPLA------------ 127 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST----------- 176 G V T H++ I+ + L A + E +L++ ++ Sbjct: 128 -GEPTVSTYHSYAGRIVTEHGLRAGYEPTTRLLTEASRWQLVDLLVRNYDGDMSEVDRMP 186 Query: 177 -------------LASIMLDNNE--ELKKAFYEILEISNDEDIETLISDIISNRTALKLI 221 L ++D +E F+ ++ + + RT LKL+ Sbjct: 187 STITDAVLALAGELDEHLVDPDELAAWTGRFFADVQSRPGRVYADVRKALQLQRTRLKLL 246 Query: 222 FFFFSYLWRRKIIEK 236 +Y R+ E Sbjct: 247 PLVRAYARRKDDFEA 261 >gi|91793704|ref|YP_563355.1| exodeoxyribonuclease V, beta subunit [Shewanella denitrificans OS217] gi|91715706|gb|ABE55632.1| exodeoxyribonuclease V, beta subunit [Shewanella denitrificans OS217] Length = 1355 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 8/140 (5%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRVLEII 86 S+ + A+AG+GKT+ + LRLLL + +L +T T AA E+ R+ + I Sbjct: 46 GSSLIEASAGTGKTYTISGLYLRLLLGHGELPPLSCEQILVVTFTNAATQELRDRIRKRI 105 Query: 87 T-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 A+ + E + +S+ A L L++ + TIH FC+ I+ Sbjct: 106 QVAFKCFLGVAVEDEFVNALKQAFPESERQIALKRLDLALKSLDEAAIFTIHGFCQRILA 165 Query: 146 QFPLEANI--TSHFAIADEE 163 E+++ S F + D E Sbjct: 166 DLAFESSLLFESEFTLDDSE 185 >gi|313847563|emb|CBY16551.1| putative UvrD/REP helicase [Chlamydophila psittaci RD1] gi|325507206|gb|ADZ18844.1| exodeoxyribonuclease V subunit beta [Chlamydophila psittaci 6BC] gi|328914196|gb|AEB55029.1| exodeoxyribonuclease V, beta subunit [Chlamydophila psittaci 6BC] Length = 1045 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 6/135 (4%) Query: 27 ASDPTRSA----WVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSH 80 P S ++ A+AG+GKT + Q VLR LL + H +L +T T AA E+ Sbjct: 6 IFHPETSIQGKYFLEASAGTGKTFTIEQIVLRALLEGSVSHVENILVVTFTNAATNELKL 65 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ E + + ++ + D+ + + L + + + TIH FC Sbjct: 66 RIQENLKQAASQLKSAITNPEHPLPPYLSPPCDVKQLYMQVRNALASIDRMAIFTIHGFC 125 Query: 141 EAIMQQFPLEANITS 155 ++QQ E I+ Sbjct: 126 NYVLQQHFPEMQISQ 140 >gi|328953552|ref|YP_004370886.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109] gi|328453876|gb|AEB09705.1| UvrD/REP helicase [Desulfobacca acetoxidans DSM 11109] Length = 652 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 62/197 (31%), Gaps = 40/197 (20%) Query: 14 IDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID + Q A V A AGSGKT LV R+ L+ P +L LT T+ Sbjct: 13 IDYQHELNPAQYEAVTLTEGPVLVIAGAGSGKTRTLVYRLAYLVEHGIPPWNILLLTFTR 72 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 A+ EM HR A L+ L G Sbjct: 73 KASQEMLHR-----------------------------------ASQLINRPLHQVSG-- 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 T HA C ++++ F + D L+ + + + Sbjct: 96 -GTFHAVCHGWLRRYGARIGYDCGFTLLDRHDQGDLVRLLRDRLELKVSPGQFPRRQTIV 154 Query: 193 YEILEISN-DEDIETLI 208 + N + D+ETL+ Sbjct: 155 EIFGALVNKNLDLETLL 171 >gi|298252946|ref|ZP_06976740.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella vaginalis 5-1] gi|297533310|gb|EFH72194.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Gardnerella vaginalis 5-1] Length = 1401 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 76/197 (38%), Gaps = 36/197 (18%) Query: 18 SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + P ++ + A AGSGKT+ + +RV+ L+ P ++L LT T AA+ Sbjct: 14 TDSAEQAAAIQAPTNKNMIIVAGAGSGKTYTMTRRVIDLIERGVAPESILGLTFTNKAAS 73 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV + ++ S +++++ + V T Sbjct: 74 ELLARVAQAVSQHSSEINKLINNGNSASSSGFLKPE--------------------VMTY 113 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 AF ++I++Q+ L + + +++LI+ Sbjct: 114 DAFFQSIVRQYGLLVGFDQNTQPLSDAGARELIKPLVNDY---------------VTNHA 158 Query: 197 EISNDEDIETLISDIIS 213 E+ + + LI D+++ Sbjct: 159 EVLSWYSFDALIDDVLA 175 >gi|313894242|ref|ZP_07827807.1| UvrD/REP helicase [Veillonella sp. oral taxon 158 str. F0412] gi|313441066|gb|EFR59493.1| UvrD/REP helicase [Veillonella sp. oral taxon 158 str. F0412] Length = 862 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 40/185 (21%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 + +Q + + ++ + A+AG+GKT+ L RV L+ A +LC+T T AA EM Sbjct: 4 NREQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGGYAKAENILCMTFTNKAANEM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ ++ + + + + T H+ Sbjct: 64 KDRIQSLVGSPAKAVE--------------------------------------ISTFHS 85 Query: 139 FCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC ++QQ + + I DEE K+L E + L + N + K + + Sbjct: 86 FCFFVLQQEGKRNETLYTDVTIFDEEDCKELSEPYRPGKLREMSFANIIGMVKEYRSLYG 145 Query: 198 ISNDE 202 +D+ Sbjct: 146 FYSDD 150 >gi|313500580|gb|ADR61946.1| RecB [Pseudomonas putida BIRD-1] Length = 874 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 13/159 (8%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT + LRL+L + P +L +T T AA E+ R+ Sbjct: 15 GSQLIEASAGTGKTFTISALYLRLILGHGGEQGFERELLPPQILVVTFTDAATKELRERI 74 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPN--KSDMSKARHLLITILETPGGLKVQTIHAFC 140 + + L + + + + + L ++ V TIH +C Sbjct: 75 RARLAEAARFFRGELEGADPLLHQLRDDYPQETWPRCAGRLEIAVQWMDEAAVSTIHGWC 134 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 + ++++ ++ S F E +L+ + + Sbjct: 135 QRMLREHAFDSG--SLFTQTLETDHSELLGQVMRDYWRR 171 >gi|293393861|ref|ZP_06638168.1| ATP-dependent DNA helicase Rep [Serratia odorifera DSM 4582] gi|291423688|gb|EFE96910.1| ATP-dependent DNA helicase Rep [Serratia odorifera DSM 4582] Length = 674 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 63/183 (34%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ + +T T AA EM Sbjct: 4 NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIHHCGYQARHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR GL + T H Sbjct: 64 KERVAQTLGR--------------------------KEAR-----------GLMISTFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + S+F++ D+ L++E K L ++ L + I Sbjct: 87 LGLDIIKREYKALGMKSNFSLFDDRDQLALLKELTKQWLE----EDKTLLAQLITTISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|315503768|ref|YP_004082655.1| uvrd/rep helicase [Micromonospora sp. L5] gi|315410387|gb|ADU08504.1| UvrD/REP helicase [Micromonospora sp. L5] Length = 1134 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 91/255 (35%), Gaps = 49/255 (19%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E + + L + T+ + + + P V A AGSGKT + RV+ L+ + P +L Sbjct: 29 ELARLLRLPAPTREQAAIIAAPVEPLLVVAGAGSGKTETMAARVMWLVANSYVRPEHILG 88 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T+ AA E++HRV + QG+ P+ ++ Sbjct: 89 LTFTRKAAGELAHRVRTRLDQLIRRLGR---------QGRDPHDDPLA------------ 127 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST----------- 176 G V T H++ I+ + L A + E +L++ ++ Sbjct: 128 -GEPTVSTYHSYAGRIVTEHGLRAGYEPTTRLLTEASRWQLVDLLVRNYDGDMSEVDRMP 186 Query: 177 -------------LASIMLDNNE--ELKKAFYEILEISNDEDIETLISDIISNRTALKLI 221 L ++D +E F+ ++ + + RT LKL+ Sbjct: 187 STITDAVLALAGELDEHLVDPDELAAWTGRFFADVQSRPGRVYADVRKALQLQRTRLKLL 246 Query: 222 FFFFSYLWRRKIIEK 236 +Y R+ E Sbjct: 247 PLVRAYARRKDDFEA 261 >gi|124026183|ref|YP_001015299.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. NATL1A] gi|123961251|gb|ABM76034.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str. NATL1A] Length = 1261 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 34/240 (14%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEI----ITAW 89 + A+AG+GKT L VLRLL + +L ++ T+A A+E+ R++E + Sbjct: 20 LIEASAGTGKTFSLSHLVLRLLTEKEYSINEILVVSFTEATASEIKARIIERLILALKII 79 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARH-----LLITILETPGGLKVQTIHAFCEAIM 144 ++ + +I + + + + SK R LL+ LE + TIH FC + Sbjct: 80 ESINTTVKPHKIDNVLNEWVDLNITSKERALYIASLLLEALERIDNADITTIHGFCSKTL 139 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD-NNEELKKAFY---------- 193 ++ +E + +I E+ S LI E + +L+ ELK F Sbjct: 140 RRESIENGNNLNPSI--EKDSNSLINEIVEEYWKKEILEIEISELKGLFKSNFNRKNLIE 197 Query: 194 -----------EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 + ND IE +S+ ++N + I F + + + +E S IA Sbjct: 198 VLSSLDNDPNNSFKQTFNDLKIEESLSNQLNNYSESLWIKFTTLWEEKGQELEDSFREIA 257 >gi|117920689|ref|YP_869881.1| exodeoxyribonuclease V subunit beta [Shewanella sp. ANA-3] gi|117613021|gb|ABK48475.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. ANA-3] Length = 1263 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 85/216 (39%), Gaps = 15/216 (6%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANA--HP---STLLCLTHTKAAAAEMSHRVLEI 85 S + A+AG+GKT+ + LRLLL + P +L +T T AA E+ R+ Sbjct: 18 GGSRLIEASAGTGKTYTISGLYLRLLLGDGLSEPLNCEQILVVTFTNAATEELRDRIRRR 77 Query: 86 IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I A+ ++ + K +++ + A L++ + TIH FC+ I+ Sbjct: 78 IQVAFKCFLGLEINDPFVQALYDKTPEAERAIALRRFDLALKSLDEAAIFTIHGFCQRIL 137 Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 E+++ S F + D E + A + E L + E + + Sbjct: 138 ADLAFESSLLFESDFTLDDSE----FLHHAVRDFWREACYPLPEYLAQIIAS--EFGDPD 191 Query: 203 DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 + + ++ A K + + + + +S+ Sbjct: 192 GLVKQLRALLGASEA-KPLKPVQPFARLAESLSQSV 226 >gi|152968347|ref|YP_001364131.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216] gi|151362864|gb|ABS05867.1| UvrD/REP helicase [Kineococcus radiotolerans SRS30216] Length = 1123 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 16/168 (9%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAA 76 + + + + +V A AG+GKT LV RV+ ++ H L +T T+ AA+ Sbjct: 7 DQSARDRVRTSHAETLFVEAGAGTGKTTALVARVVHMVATGHLQHVGELAAITFTENAAS 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R+ E + + + E + R T + T+ Sbjct: 67 ELRSRIREGLEDAARGEHRGTTYEPQE--------------RDCCRTAAAALDDAAIGTL 112 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 H I+Q+ PLEA + FA+A +L ++A + LA ++ D Sbjct: 113 HGTAIRILQEAPLEAGLPPGFAVASATGGDELDDDAWEDFLADLLADP 160 >gi|113970112|ref|YP_733905.1| exodeoxyribonuclease V subunit beta [Shewanella sp. MR-4] gi|113884796|gb|ABI38848.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. MR-4] Length = 1274 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 85/216 (39%), Gaps = 15/216 (6%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANA-----HPSTLLCLTHTKAAAAEMSHRVLEI 85 S + A+AG+GKT+ + LRLLL + + +L +T T AA E+ R+ Sbjct: 18 GGSRLIEASAGTGKTYTISGLYLRLLLGDGLSESLNCEQILVVTFTNAATEELRDRIRRR 77 Query: 86 IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I A+ ++ + K +++ + A L++ + TIH FC+ I+ Sbjct: 78 IQVAFKCFLGLEINDPFVQALYDKTPEAERAIALRRFDLALKSLDEAAIFTIHGFCQRIL 137 Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 E+++ S F + D E + A + E L + E + + Sbjct: 138 ADLAFESSLLFESDFTLDDSE----FLHHAVRDFWREACYPLPEYLAQIIAS--EFGDPD 191 Query: 203 DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 + + ++ A K + + + + +S+ Sbjct: 192 GLVKQLRALLGASEA-KPLKPVQPFARLAESLSQSV 226 >gi|253701545|ref|YP_003022734.1| UvrD/REP helicase [Geobacter sp. M21] gi|251776395|gb|ACT18976.1| UvrD/REP helicase [Geobacter sp. M21] Length = 678 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 38/165 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL + V A AGSGKT ++ R+ L+L P +L +T T Sbjct: 1 MLDLSRLNPEQLAAVKHTEGPLLVLAGAGSGKTGVITYRIAHLVLDKKVPPDQILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ + G+ Sbjct: 61 NKAAKEMKERVEHLVGR-------------------------------------KQSKGI 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ ++++ +F+I L+ + + Sbjct: 84 VLSTFHSLGVRVLKRDIERLGYKKNFSIYSTADQVGLVRQIVREV 128 >gi|114047350|ref|YP_737900.1| exodeoxyribonuclease V subunit beta [Shewanella sp. MR-7] gi|113888792|gb|ABI42843.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. MR-7] Length = 1269 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 85/216 (39%), Gaps = 15/216 (6%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANA--HP---STLLCLTHTKAAAAEMSHRVLEI 85 S + A+AG+GKT+ + LRLLL + P +L +T T AA E+ R+ Sbjct: 18 GGSRLIEASAGTGKTYTISGLYLRLLLGDGLSEPLNCEQILVVTFTNAATEELRDRIRRR 77 Query: 86 IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I A+ ++ + K +++ + A L++ + TIH FC+ I+ Sbjct: 78 IQVAFKCFLGLEINDPFVQALYDKTPEAERAIALRRFDLALKSLDEAAIFTIHGFCQRIL 137 Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 E+++ S F + D E + A + E L + E + + Sbjct: 138 ADLAFESSLLFESDFTLDDSE----FLHHAVRDFWREACYPLPEYLAQIIAS--EFGDPD 191 Query: 203 DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 + + ++ A K + + + + +S+ Sbjct: 192 GLVKQLRALLGASEA-KPLQPVQPFARLAESLSQSV 226 >gi|332173435|gb|AEE22689.1| exodeoxyribonuclease V, beta subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 1315 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 6/139 (4%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA----HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 + A+AG+GKT+ +V LRLLL + +L +T T AA AE+ R+ + + + Sbjct: 16 LIEASAGTGKTYTIVNLYLRLLLGDECTPLSVDKILVVTFTNAATAELKQRIRQRLQR-A 74 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + ++ Q ++ H L+ ++ V TIH FC+ ++ E Sbjct: 75 YFDFYAHKSDDEFTQYLIDRSENIELDCHRLLLAIKQMDDASVFTIHGFCQRMLSLHAFE 134 Query: 151 ANITSHFA-IADEEQSKKL 168 + + + DE Q KL Sbjct: 135 SGAMYEQSLVLDESQWLKL 153 >gi|330880227|gb|EGH14376.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 1230 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGSEQSGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSA--EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + +SA ++ ++ L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEISAPDDLISELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|88860009|ref|ZP_01134648.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Pseudoalteromonas tunicata D2] gi|88818003|gb|EAR27819.1| exonuclease V, beta chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase [Pseudoalteromonas tunicata D2] Length = 1183 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 87/218 (39%), Gaps = 18/218 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLA---------NAHPSTLLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT+ + LR LL +L +T T+AA AE+ RV + Sbjct: 16 LIEASAGTGKTYTITALYLRHLLGLQVAGQTGVPLTVEQILVVTFTEAATAEIKDRVRKR 75 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 I + + + +Q S+ A LL ++ + TIH FC+ +++ Sbjct: 76 I-ILARDALMGGDCDDAVVQAILSEVSETKMAFALLDAAAKSMDDAAIFTIHGFCQRMLK 134 Query: 146 QFPLEANITSHFA-IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204 Q E+ + + I D+ + L+ EA K + + +E + E + Sbjct: 135 QHAFESGVAFNLTFIMDQSE---LLTEALKDYWRTFVYGLTKERTAHV--LAYFPAPERL 189 Query: 205 ETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 ++ ++S A +W+ E+ L +A Sbjct: 190 YKKVAALLSRSGAKIQPQINLDEVWQ--WQEQYLSLLA 225 >gi|87302318|ref|ZP_01085143.1| UvrD/REP helicase-like protein [Synechococcus sp. WH 5701] gi|87283243|gb|EAQ75199.1| UvrD/REP helicase-like protein [Synechococcus sp. WH 5701] Length = 1285 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 66/162 (40%), Gaps = 12/162 (7%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIIT 87 DP + A+AG+GKT L VLRL+ LL +T TKAAAAE+ R+ + Sbjct: 15 DPGVH-LIEASAGTGKTFTLAHLVLRLVGERQLSLRALLVVTFTKAAAAELRDRIGRRLQ 73 Query: 88 AWSH-------LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 E L E+ + G P + + R L+ LE + TIH FC Sbjct: 74 QAQQLLQTPDPAGHEGLDQELKEWLGNIP-PQNYERLRAQLLLALEELDAADITTIHGFC 132 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 +Q+ LEA + + + L E+ +L Sbjct: 133 HRSLQRQALEAGLAP--EVELDNDGALLQEQVVHDYWQQQVL 172 >gi|283783598|ref|YP_003374352.1| UvrD/REP helicase [Gardnerella vaginalis 409-05] gi|283441008|gb|ADB13474.1| UvrD/REP helicase [Gardnerella vaginalis 409-05] Length = 1397 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 76/197 (38%), Gaps = 36/197 (18%) Query: 18 SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + P ++ + A AGSGKT+ + +RV+ L+ P ++L LT T AA+ Sbjct: 14 TDSAEQAAAIQAPTNKNMIIVAGAGSGKTYTMTRRVIDLIERGVAPESILGLTFTNKAAS 73 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV + ++ S +++++ + V T Sbjct: 74 ELLARVAQAVSQHSSEINKLINNGNSASSSGFLKPE--------------------VMTY 113 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 AF ++I++Q+ L + + +++LI+ Sbjct: 114 DAFFQSIVRQYGLLVGFDQNTQPLSDAGARELIKPLVNDY---------------VTNHA 158 Query: 197 EISNDEDIETLISDIIS 213 E+ + + LI D+++ Sbjct: 159 EVLSWYSFDALIDDVLA 175 >gi|110807532|ref|YP_691052.1| ATP-dependent DNA helicase Rep [Shigella flexneri 5 str. 8401] gi|110617080|gb|ABF05747.1| ATP-dependent DNA helicase rep [Shigella flexneri 5 str. 8401] Length = 678 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 66/198 (33%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 12 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 71 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + GL + T H Sbjct: 72 VGQTLGRKE-------------------------------------AHGLMISTFHTLGL 94 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + +A D+ L++ I ND Sbjct: 95 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIA----DDKVLLQQLISTISNWKND 150 Query: 202 -EDIETLISDIISNRTAL 218 + + I R + Sbjct: 151 LKTPSQAAASAIGERDRI 168 >gi|72382484|ref|YP_291839.1| DNA helicase/exodeoxyribonuclease V subunit beta [Prochlorococcus marinus str. NATL2A] gi|72002334|gb|AAZ58136.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Prochlorococcus marinus str. NATL2A] Length = 1261 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 34/240 (14%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII----TAW 89 + A+AG+GKT L VLRLL + +L ++ T+A A+E+ R++E + Sbjct: 20 LIEASAGTGKTFSLSHLVLRLLTEKEYSINEILVVSFTEATASEIKARIIERLILALKII 79 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHL-----LITILETPGGLKVQTIHAFCEAIM 144 ++ + +I + + + + SK + L L+ LE + TIH FC + Sbjct: 80 ESINTNVKPYKIDNVLNEWVDLNITSKEKALYIASLLLEALERIDNADITTIHGFCSKTL 139 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD-NNEELKKAFY---------- 193 ++ +E + I E+ S LI E + +L+ ELK F Sbjct: 140 RREAIENGNNLNPTI--EKDSYSLINEIVEEYWKKEILEIEISELKGLFKSNFNRKNLID 197 Query: 194 -----------EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 + ND IE +S ++N + I F + + + +E S IA Sbjct: 198 VLSSLDNDPNNSFKQTFNDLKIEESLSSQLNNYSESLWIKFTTIWEEKGQELEDSFREIA 257 >gi|303228659|ref|ZP_07315484.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Veillonella atypica ACS-134-V-Col7a] gi|302516639|gb|EFL58556.1| exonuclease, DNA polymerase III, epsilon subunit family protein [Veillonella atypica ACS-134-V-Col7a] Length = 861 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 78/216 (36%), Gaps = 50/216 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 +Q + + R+ + A+AG+GKT+ L RV ++ + +LC+T T AA EM Sbjct: 4 NSEQQRVIDELDRNILLLASAGTGKTNTLAYRVAHIIESGRCEAHQILCMTFTNKAAQEM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ ++ + + + T H+ Sbjct: 64 KSRIESLVGQPAKAVE--------------------------------------ISTFHS 85 Query: 139 FCEAIM-----QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 FC ++ + L ++ I DEE K+L K + + + + K + Sbjct: 86 FCFYVLQQEGKRDESLYTDV----TIFDEEDCKELYLPYKPRNMRDMNFASLISMVKEYR 141 Query: 194 EILEISNDEDIETLISDIIS-NRTALKLIF-FFFSY 227 + E ++ I+ I R K I F++Y Sbjct: 142 SVYEFYSESLIDDYKRTIQRLEREQSKQIEKLFYNY 177 >gi|254292798|ref|YP_003058821.1| UvrD/REP helicase [Hirschia baltica ATCC 49814] gi|254041329|gb|ACT58124.1| UvrD/REP helicase [Hirschia baltica ATCC 49814] Length = 793 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 68/192 (35%), Gaps = 43/192 (22%) Query: 15 DLISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTK 72 D + +EQ A + T + V A AG+GKT +L R+ +L A S L +T T Sbjct: 29 DYLDGLNAEQRDAVETTDGALLVLAGAGTGKTRVLTTRLAHILNQRKAWASQTLTVTFTN 88 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R ++I E Sbjct: 89 KAAREMRERAEKLIGD-------------------------------------EAQSLSW 111 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T H+ I+++ + S+F I D + +L+++ + + +D + Sbjct: 112 LGTFHSVSSKILRRHAEIVGLESNFTIIDTDDQLRLLKQ----IIEAENIDTKRWTPRFM 167 Query: 193 YEILEISNDEDI 204 +++ + + Sbjct: 168 AGLIDGWKNRAV 179 >gi|307566117|ref|ZP_07628575.1| putative phage head-tail adaptor [Prevotella amnii CRIS 21A-A] gi|307345305|gb|EFN90684.1| putative phage head-tail adaptor [Prevotella amnii CRIS 21A-A] Length = 1140 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 79/180 (43%), Gaps = 6/180 (3%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLE 84 +A+ A+AGSGKT L + +L+ + +L +T T A +EM R+L Sbjct: 4 IANSNKTLTVYKASAGSGKTFTLTVEFISILVKYPEDYNKMLAVTFTNKATSEMKLRILS 63 Query: 85 IITAWSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + H L+ E K + + A ++L + +VQTI AF +A+ Sbjct: 64 QLYGIGHGLASSKSYLEKVKANTALTEATIRNNALYVLEKLTHEYHYFRVQTIDAFFQAV 123 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++ E +T++ + + + ++ +A + ++ N+ + K + + + +ED Sbjct: 124 LRNLGKELGLTANLRV--DLNTAQVEAKAVDELIDNL--KENDPVLKWIDDYISSNIEED 179 >gi|166154823|ref|YP_001654941.1| DNA helicase [Chlamydia trachomatis 434/Bu] gi|166155698|ref|YP_001653953.1| DNA helicase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301336102|ref|ZP_07224346.1| DNA helicase [Chlamydia trachomatis L2tet1] gi|165930811|emb|CAP04309.1| DNA helicase [Chlamydia trachomatis 434/Bu] gi|165931686|emb|CAP07263.1| DNA helicase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 634 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 38/163 (23%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 L S+ + Q+ A + P + V A AG+GKT ++ R+L L+ + P +L +T T Sbjct: 2 LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILHLIEESRLDPKQILAITFTNK 61 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA E+ R+ + + V Sbjct: 62 AANELKERIQSQCRELGYSDVPM------------------------------------V 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I+++ + S+F I D+ S+KLI++ + Sbjct: 86 STFHSLSVYILRRSIHLLDRQSNFVIYDQSDSEKLIKQCLRKL 128 >gi|331655462|ref|ZP_08356455.1| ATP-dependent DNA helicase Rep [Escherichia coli M718] gi|331046783|gb|EGI18867.1| ATP-dependent DNA helicase Rep [Escherichia coli M718] Length = 690 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 24 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 83 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 84 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 106 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 107 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 162 Query: 202 -EDIETLISDIISNRTAL 218 + ++ R + Sbjct: 163 LKTPAQAAAEAKGERDRI 180 >gi|319788629|ref|YP_004148104.1| exodeoxyribonuclease V subunit beta [Pseudoxanthomonas suwonensis 11-1] gi|317467141|gb|ADV28873.1| exodeoxyribonuclease V, beta subunit [Pseudoxanthomonas suwonensis 11-1] Length = 1205 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 14/153 (9%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS- 93 + A+AG+GKT L V+RL+L A P +L +T T+AA E+ RV + + + ++ Sbjct: 18 IEASAGTGKTFTLATLVVRLVLERALPVERILAVTFTEAATQELRSRVRKRLVLAAEVAA 77 Query: 94 ---------DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + L+A++ + + AR L ++ V TIH FC ++ Sbjct: 78 GTVPADGPGEAQLTAQLLQAHLDASGEEITQVARRL-RLAADSIDQAAVFTIHGFCARVL 136 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 ++ LE+ F + + + EA + L Sbjct: 137 REHALESG--QGFDPPELLANDIGLREAVAADL 167 >gi|316933463|ref|YP_004108445.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1] gi|315601177|gb|ADU43712.1| UvrD/REP helicase [Rhodopseudomonas palustris DX-1] Length = 1133 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 55/191 (28%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 + A+ + + A G+GKT L+ RV LL P +L LT + AA EM+ R+ Sbjct: 201 QAAAAAHRGEAYLLEAGPGTGKTQTLIARVEGLLEEGIDPRRILLLTFSNKAAGEMAERI 260 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 E + + T HAF Sbjct: 261 ARKRP--------------------------------------EAAAAMWIGTFHAFGLD 282 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 I+++F E ++ + D ++ +L+EE + N Sbjct: 283 IIRRFHAELGLSKDPRMMDRTEAVELLEEEFPRL-----------------RLAHYRNLY 325 Query: 203 DIETLISDIIS 213 D +I+D+++ Sbjct: 326 DPTQIIADMLA 336 >gi|189218845|ref|YP_001939486.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Methylacidiphilum infernorum V4] gi|189185703|gb|ACD82888.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Methylacidiphilum infernorum V4] Length = 1055 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 22/173 (12%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 TR V A+AG+GKTH LV+R L LLL P +LL +T T+ A+ E+ R+ + Sbjct: 9 TRRLVVVASAGAGKTHQLVERALDLLLEGVAPHSLLIITFTRKASQEIVDRIFSTLAQRV 68 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 S E K+ S+A L T++E L+ TI +F +++ Sbjct: 69 LASKE-------KVDPSPEESLLKSRAYRCLQTLIEDLPFLRFGTIDSFLYHLLRY---- 117 Query: 151 ANITSH-------FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 I F++ D++ K L +E + L + + +F Sbjct: 118 --IPPDKKPTFAPFSLLDDKGKKSLQQEIVRRILTA--REFESPFLDSFEMFY 166 >gi|118580949|ref|YP_902199.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379] gi|118503659|gb|ABL00142.1| UvrD/REP helicase [Pelobacter propionicus DSM 2379] Length = 672 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 54/161 (33%), Gaps = 40/161 (24%) Query: 17 ISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74 + + +Q LA + A AGSGKT ++ R++ L+ P +L +T T A Sbjct: 1 MKKLNPQQFLAVRHTEGPLLILAGAGSGKTQVITTRIVHLIKDRQVPAENILAVTFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV + S G+ + Sbjct: 61 AREMRERVASMAGKSSE--------------------------------------GIIIS 82 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ I+++ +F+I ++ +A + Sbjct: 83 TFHSLGVRILRRDIRSLGFKPNFSIYSSSDQAGVLRQAMRE 123 >gi|114331347|ref|YP_747569.1| exodeoxyribonuclease V, beta subunit [Nitrosomonas eutropha C91] gi|114308361|gb|ABI59604.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Nitrosomonas eutropha C91] Length = 1228 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 65/165 (39%), Gaps = 19/165 (11%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANA----------HPSTLLCLTHTKAAAAEMSH 80 T S + A+AG+GKT + +RL+L + P +L +T T+AA E+ Sbjct: 16 TGSHLIEASAGTGKTFTIAMLYVRLILGHQGEFAFSGGALTPPEILVVTFTEAATKELRD 75 Query: 81 RVLEIITAWSHL-------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 R+ +T + L + + + + + + ++ + L E + Sbjct: 76 RIRARLTEAARLFRADPINAQSLNDTDPLQQLLFEYSPAEWAACARKLELAAEWMDEAAI 135 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 TIH +C ++++ ++ S F E +L E + Sbjct: 136 STIHGWCNRMLREHAFDSQ--SLFTQELETDQTELRAEVVRDYWR 178 >gi|240256061|ref|NP_194242.6| ATP binding / ATP-dependent DNA helicase/ DNA binding / hydrolase [Arabidopsis thaliana] Length = 1149 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 38/160 (23%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 ++S ++ A S+ + V A GSGKT +V RVL LL PS +L +T TKAA Sbjct: 244 MLSLNDRQRDAACSNISTPLMVIAGPGSGKTSTMVGRVLVLLNEGLLPSNILAMTFTKAA 303 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 +EM R+ + + + + Sbjct: 304 TSEMRERIGKSAGKKAAKD-------------------------------------ITIS 326 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 T H+F + + + TS F++ Q ++ I EA + Sbjct: 327 TFHSFSLQLCRMHADKLQRTSEFSVYGHGQQRRAIIEAVR 366 >gi|33240542|ref|NP_875484.1| ATP-dependent exoDNAse beta subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238070|gb|AAQ00137.1| ATP-dependent exoDNAse beta subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 1256 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 10/158 (6%) Query: 35 WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT+ L VLRLL + +L ++ TKA A+E+ R+ + Sbjct: 19 LLEASAGTGKTYSLAHLVLRLLTEKGCPINKILVISFTKATASEIKARISSRLVLALKGL 78 Query: 94 DEILSAEI---------TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + ++ K ++S + LLI LE + TIH FC + Sbjct: 79 ESYTPKSLASCTDQVMNEWLESKVIDESTRLQWASLLIKALENIDSADITTIHGFCSRNL 138 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 ++ ++ EE +K+LI E +L Sbjct: 139 KREAIDVGNNIETEALSEEDNKELILEIIHEYWREEVL 176 >gi|127513058|ref|YP_001094255.1| exodeoxyribonuclease V, beta subunit [Shewanella loihica PV-4] gi|126638353|gb|ABO23996.1| exodeoxyribonuclease V, beta subunit [Shewanella loihica PV-4] Length = 1223 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 12/154 (7%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH--P---STLLCLTHTKAAAAEMSHRVLEIIT-A 88 + A+AG+GKT+ + +RLLL ++ P +L +T T AA E+ R+ + I A Sbjct: 18 LIEASAGTGKTYTIAGLYVRLLLGDSQRAPLSCEQILVVTFTNAATQELRDRIRKKIQLA 77 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + + + + S+A L L++ + TIH FC+ I+ Sbjct: 78 YRAFLGMEVDDPLINTLYSEAEPEARSQALKRLDLALKSLDEAAIFTIHGFCQRILSDMA 137 Query: 149 LEANI--TSHFAIADEEQSKKLIEEAKKSTLASI 180 E+++ S F + D E + A + Sbjct: 138 FESSLLFESEFTLDDSE----YLHHAVRDFWREA 167 >gi|284923883|emb|CBG36982.1| ATP-dependent DNA helicase [Escherichia coli 042] Length = 678 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 12 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 71 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 72 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 94 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 95 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 150 Query: 202 -EDIETLISDIISNRTAL 218 + + I R + Sbjct: 151 LKTPSQAAASAIGERDRI 168 >gi|262385344|gb|ACY64665.1| SRS2 [Arabidopsis thaliana] Length = 1147 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 38/160 (23%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 ++S ++ A S+ + V A GSGKT +V RVL LL PS +L +T TKAA Sbjct: 244 MLSLNDRQRDAACSNISTPLMVIAGPGSGKTSTMVGRVLVLLNEGLLPSNILAMTFTKAA 303 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 +EM R+ + + + + Sbjct: 304 TSEMRERIGKSAGKKAAKD-------------------------------------ITIS 326 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 T H+F + + + TS F++ Q ++ I EA + Sbjct: 327 TFHSFSLQLCRMHADKLQRTSEFSVYGHGQQRRAIIEAVR 366 >gi|218697495|ref|YP_002405162.1| ATP-dependent DNA helicase Rep [Escherichia coli 55989] gi|218354227|emb|CAV00880.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia coli 55989] Length = 673 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + + I R + Sbjct: 146 LKTPSQAAASAIGERDRI 163 >gi|323142809|ref|ZP_08077522.1| putative ATP-dependent DNA helicase Rep [Succinatimonas hippei YIT 12066] gi|322417454|gb|EFY08075.1| putative ATP-dependent DNA helicase Rep [Succinatimonas hippei YIT 12066] Length = 671 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 75/210 (35%), Gaps = 39/210 (18%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEM 78 ++Q + V A AGSGKT ++ +++ L+ + P+ + +T T AAAEM Sbjct: 4 NDAQQQAVTYIDGPCLVLAGAGSGKTRVITAKIVNLITGHKLPAKTVCAVTFTNKAAAEM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + + + + T H+ Sbjct: 64 RERVAQELGQ-------------------------------------DCAKEIWISTFHS 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I++ + + +F + DE K++ + + +MLD E F + +I Sbjct: 87 LGLGILRIEHNKVGLKRNFTLFDESDQFKIVRDLIREKY-PLMLDGKAERDCIFDALQQI 145 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFSYL 228 S + DI T L + +YL Sbjct: 146 SLWKGELRAPQDITPKTTLSSLYEEYQTYL 175 >gi|68171270|ref|ZP_00544672.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa] gi|88657941|ref|YP_507655.1| UvrD/Rep family helicase [Ehrlichia chaffeensis str. Arkansas] gi|67999317|gb|EAM85964.1| UvrD/REP helicase [Ehrlichia chaffeensis str. Sapulpa] gi|88599398|gb|ABD44867.1| helicase, UvrD/Rep family [Ehrlichia chaffeensis str. Arkansas] Length = 639 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 42/164 (25%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D I+ +Q A + + A AG+GKT + R+ ++ N A PS +L +T T Sbjct: 3 DYITSLNEDQREAVININGPILILAGAGTGKTRTITSRIAYIINNNFALPSQILAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ E+ ++ + Sbjct: 63 KAANEMLSRISELTPVYN----------------------------------------IW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T HA I++Q + + F I + + ++I+ Sbjct: 83 LGTFHAIAAKILRQHAEVVGLKNDFTIINTDDQLQVIKNIVNDM 126 >gi|288942789|ref|YP_003445029.1| exodeoxyribonuclease V subunit beta [Allochromatium vinosum DSM 180] gi|288898161|gb|ADC63997.1| exodeoxyribonuclease V, beta subunit [Allochromatium vinosum DSM 180] Length = 1284 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 76/193 (39%), Gaps = 17/193 (8%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT L LRL+L + P +L +T T AA E+ R+ Sbjct: 17 GSRLIEASAGTGKTFTLAMLYLRLVLGHGGETAFARQLMPPEILVVTFTNAATEELRDRI 76 Query: 83 LEIITA----WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + + + S S + + D++ + L E + TIHA Sbjct: 77 RRRLVEASLVFRNQSSPGSSDPLLLDLRDQMAGGDLAHSARRLELAAEWMDEAAISTIHA 136 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 +C ++++ ++ + F E + ++ A + + +L E + E Sbjct: 137 WCYRMLREHAFDS--ANAFEQTLENDDAERLQHAAEDYWRTFLLGLPAERLEPILEQWSQ 194 Query: 199 SND--EDIETLIS 209 +D + + L+S Sbjct: 195 PSDLAKAVRGLLS 207 >gi|254038990|ref|ZP_04873041.1| ATP-dependent DNA helicase Rep [Escherichia sp. 1_1_43] gi|226838681|gb|EEH70709.1| ATP-dependent DNA helicase Rep [Escherichia sp. 1_1_43] gi|309704217|emb|CBJ03564.1| ATP-dependent DNA helicase [Escherichia coli ETEC H10407] gi|323934169|gb|EGB30600.1| ATP-dependent DNA helicase Rep [Escherichia coli E1520] Length = 673 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + + I R + Sbjct: 146 LKTPSQAAASAIGERDRI 163 >gi|281603168|gb|ADA76152.1| ATP-dependent DNA helicase rep [Shigella flexneri 2002017] Length = 678 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 12 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 71 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + GL + T H Sbjct: 72 VGQTLGRKE-------------------------------------AHGLMISTFHTLGL 94 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 95 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 150 Query: 202 -EDIETLISDIISNRTAL 218 + + I R + Sbjct: 151 LKTPSQAAASAIGERDRI 168 >gi|82546132|ref|YP_410079.1| ATP-dependent DNA helicase Rep [Shigella boydii Sb227] gi|187733202|ref|YP_001882397.1| ATP-dependent DNA helicase Rep [Shigella boydii CDC 3083-94] gi|81247543|gb|ABB68251.1| rep helicase [Shigella boydii Sb227] gi|187430194|gb|ACD09468.1| ATP-dependent DNA helicase Rep [Shigella boydii CDC 3083-94] gi|320176021|gb|EFW51090.1| ATP-dependent DNA helicase Rep [Shigella dysenteriae CDC 74-1112] gi|320185439|gb|EFW60208.1| ATP-dependent DNA helicase Rep [Shigella flexneri CDC 796-83] gi|332089063|gb|EGI94174.1| ATP-dependent DNA helicase Rep [Shigella boydii 3594-74] Length = 673 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + + I R + Sbjct: 146 LKTPSQAAASAIGERDRI 163 >gi|282849748|ref|ZP_06259132.1| UvrD/REP helicase [Veillonella parvula ATCC 17745] gi|282580685|gb|EFB86084.1| UvrD/REP helicase [Veillonella parvula ATCC 17745] Length = 862 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 45/212 (21%), Positives = 82/212 (38%), Gaps = 44/212 (20%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 + +Q + + ++ + A+AG+GKT+ L RV L+ A +LC+T T AA EM Sbjct: 4 NREQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGGYAKAENILCMTFTNKAANEM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ ++ + + + V T H+ Sbjct: 64 KGRIQSLVGSPAKAVE--------------------------------------VSTFHS 85 Query: 139 FCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC I+QQ + + + DEE K+L E + L + N + K + + Sbjct: 86 FCFFILQQEGKRNETLYTDVTVFDEEDCKELSEPYRPGKLREMSFANVISMVKEYRSLYG 145 Query: 198 ISNDE---DIETLISDI-ISNRTALKLIFFFF 225 +D+ D + I + R A++ +F F Sbjct: 146 FYSDDLVGDYKRTIERLQKEQREAIEQLFSSF 177 >gi|331679887|ref|ZP_08380550.1| ATP-dependent DNA helicase Rep [Escherichia coli H591] gi|331072434|gb|EGI43766.1| ATP-dependent DNA helicase Rep [Escherichia coli H591] Length = 690 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 24 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 83 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 84 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 106 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 107 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 162 Query: 202 -EDIETLISDIISNRTAL 218 + ++ R + Sbjct: 163 LKTPAQAAAEAKGERDRI 180 >gi|295698460|ref|YP_003603115.1| DNA helicase II [Candidatus Riesia pediculicola USDA] gi|291157481|gb|ADD79926.1| DNA helicase II [Candidatus Riesia pediculicola USDA] Length = 651 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 86/227 (37%), Gaps = 47/227 (20%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 I+ ++ + E + A + V A AGSGKT +LV R++ LL +++L LT + Sbjct: 1 MIEKLNSKQKEAVTAPS-EENILVLAGAGSGKTRVLVHRIIWLLKKIRVSSTSILTLTFS 59 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 A E+ RV +II L Sbjct: 60 NKAVLEIRRRVNDIINLCQE--------------------------------------NL 81 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H ++ E N+ +F I D E K I +A + + L++ L + Sbjct: 82 IIDTFHGLAYRFLRVHYSEVNLPYNFQILDSEDQKYFIRKAIRDS----QLEHKRGLLQK 137 Query: 192 FYEILEISNDEDIETLISDII-SNRTALKLIFFFFSYLWRRKIIEKS 237 E + + ++ I DI+ NR + +F YL +KI + S Sbjct: 138 STEYINKNKEKGIRP--KDILKKNRIDSSNMDYFKIYLTYQKICDHS 182 >gi|70734238|ref|YP_257878.1| exodeoxyribonuclease V subunit beta [Pseudomonas fluorescens Pf-5] gi|68348537|gb|AAY96143.1| exodeoxyribonuclease V, beta subunit [Pseudomonas fluorescens Pf-5] Length = 1230 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 16/167 (9%) Query: 25 LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAA 74 LA S + A+AG+GKT + LRL+L + P +L +T T AA Sbjct: 8 ALAFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGGEAAGFGRELLPPQILVVTFTDAA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAE---ITKIQGKKPNKSDMSKARHLLITILETPGGL 131 E+ R+ + + + SA I +++ + P + + A L I + Sbjct: 68 TKELRERIRTRLAEAARFFRDETSAPDGLIVELREQYPVEQWAACANRLDIAA-QWMDEA 126 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 V TIH++C+ ++++ ++ S F E L+ + + Sbjct: 127 AVSTIHSWCQRMLREHAFDSG--SLFTQTLETDHSDLLGQVLRDYWR 171 >gi|301021431|ref|ZP_07185455.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 69-1] gi|300398067|gb|EFJ81605.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 69-1] Length = 673 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + + I R + Sbjct: 146 LKTPSQAAASAIGERDRI 163 >gi|154244732|ref|YP_001415690.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] gi|154158817|gb|ABS66033.1| UvrD/REP helicase [Xanthobacter autotrophicus Py2] Length = 1107 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 7/128 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 V A AG+GKT ++ RV LL++ A P ++ +T T+ AA+ + RV + Sbjct: 21 LLVEAAAGTGKTALMAGRVTMLLMSGAEPRSIAAITFTELAASALGARVHRYV------- 73 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 D++L+ + K + R +L L TIHAFC+ I+ + +EA+I Sbjct: 74 DDLLAGRVPKPLREALPDGLTDAQRRILSEAAGKLDELTATTIHAFCQTIICSYAVEADI 133 Query: 154 TSHFAIAD 161 I D Sbjct: 134 DPGARILD 141 >gi|330445114|ref|ZP_08308766.1| exodeoxyribonuclease V, beta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489305|dbj|GAA03263.1| exodeoxyribonuclease V, beta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 1210 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 15/166 (9%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA----------HPSTLLC 67 +QT Q +A + + A+AG+GKT +V LRLLL + +L Sbjct: 5 TQTNILQPMAFPLHGTRLIEASAGTGKTFTIVSLYLRLLLGHGNDDCAHIKPLDVDQILV 64 Query: 68 LTHTKAAAAEMSHRVLEIITAW--SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 +T T+AA AE+ R+ + I S E + I + D A +L Sbjct: 65 VTFTEAATAELRDRIRKGIRDAYVSFSRGESVGPFKDTISVLLNDIHDHKYAARVLKDAE 124 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEAN--ITSHFAIADEEQSKKLI 169 V TIH FC+ ++ Q E+ + F + DE Q K L+ Sbjct: 125 RRMDEASVYTIHGFCQRMLTQNAFESGCRFNNEF-VTDESQLKSLV 169 >gi|49176407|ref|YP_026251.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia coli str. K-12 substr. MG1655] gi|89110239|ref|AP_004019.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia coli str. K-12 substr. W3110] gi|170083265|ref|YP_001732585.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia coli str. K-12 substr. DH10B] gi|238902859|ref|YP_002928655.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia coli BW2952] gi|54041576|sp|P09980|REP_ECOLI RecName: Full=ATP-dependent DNA helicase rep gi|48994965|gb|AAT48209.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia coli str. K-12 substr. MG1655] gi|85676270|dbj|BAE77520.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia coli str. K12 substr. W3110] gi|169891100|gb|ACB04807.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia coli str. K-12 substr. DH10B] gi|238860820|gb|ACR62818.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia coli BW2952] gi|260451377|gb|ACX41799.1| ATP-dependent DNA helicase Rep [Escherichia coli DH1] gi|315138356|dbj|BAJ45515.1| ATP-dependent DNA helicase Rep [Escherichia coli DH1] Length = 673 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + + I R + Sbjct: 146 LKTPSQAAASAIGERDRI 163 >gi|3318688|pdb|1UAA|A Chain A, E. Coli Rep HelicaseDNA COMPLEX gi|3318689|pdb|1UAA|B Chain B, E. Coli Rep HelicaseDNA COMPLEX gi|148182|gb|AAA67579.1| rep helicase [Escherichia coli str. K-12 substr. MG1655] Length = 673 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + + I R + Sbjct: 146 LKTPSQAAASAIGERDRI 163 >gi|74314292|ref|YP_312711.1| ATP-dependent DNA helicase Rep [Shigella sonnei Ss046] gi|157154755|ref|YP_001465258.1| ATP-dependent DNA helicase Rep [Escherichia coli E24377A] gi|188492589|ref|ZP_02999859.1| ATP-dependent DNA helicase Rep [Escherichia coli 53638] gi|191166128|ref|ZP_03027963.1| ATP-dependent DNA helicase Rep [Escherichia coli B7A] gi|194438642|ref|ZP_03070730.1| ATP-dependent DNA helicase Rep [Escherichia coli 101-1] gi|218556340|ref|YP_002389254.1| ATP-dependent DNA helicase Rep [Escherichia coli IAI1] gi|253775597|ref|YP_003038428.1| ATP-dependent DNA helicase Rep [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163722|ref|YP_003046830.1| ATP-dependent DNA helicase Rep [Escherichia coli B str. REL606] gi|293413221|ref|ZP_06655883.1| ATP-dependent DNA helicase Rep [Escherichia coli B354] gi|293468096|ref|ZP_06664508.1| ATP-dependent DNA helicase Rep [Escherichia coli B088] gi|300921517|ref|ZP_07137861.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 115-1] gi|300923277|ref|ZP_07139326.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 182-1] gi|300930059|ref|ZP_07145489.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 187-1] gi|301303672|ref|ZP_07209793.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 124-1] gi|301325467|ref|ZP_07218950.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 78-1] gi|307313645|ref|ZP_07593265.1| ATP-dependent DNA helicase Rep [Escherichia coli W] gi|309796282|ref|ZP_07690692.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 145-7] gi|331649602|ref|ZP_08350684.1| ATP-dependent DNA helicase Rep [Escherichia coli M605] gi|331675248|ref|ZP_08375999.1| ATP-dependent DNA helicase Rep [Escherichia coli TA280] gi|73857769|gb|AAZ90476.1| rep helicase, a single-stranded DNA dependent ATPase [Shigella sonnei Ss046] gi|157076785|gb|ABV16493.1| ATP-dependent DNA helicase Rep [Escherichia coli E24377A] gi|188487788|gb|EDU62891.1| ATP-dependent DNA helicase Rep [Escherichia coli 53638] gi|190903904|gb|EDV63618.1| ATP-dependent DNA helicase Rep [Escherichia coli B7A] gi|194422446|gb|EDX38445.1| ATP-dependent DNA helicase Rep [Escherichia coli 101-1] gi|218363109|emb|CAR00749.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia coli IAI1] gi|242379311|emb|CAQ34122.1| rep helicase, a single-stranded DNA dependent ATPase [Escherichia coli BL21(DE3)] gi|253326641|gb|ACT31243.1| ATP-dependent DNA helicase Rep [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975623|gb|ACT41294.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia coli B str. REL606] gi|253979779|gb|ACT45449.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia coli BL21(DE3)] gi|291321474|gb|EFE60912.1| ATP-dependent DNA helicase Rep [Escherichia coli B088] gi|291468169|gb|EFF10666.1| ATP-dependent DNA helicase Rep [Escherichia coli B354] gi|300411585|gb|EFJ94895.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 115-1] gi|300420422|gb|EFK03733.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 182-1] gi|300462047|gb|EFK25540.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 187-1] gi|300840972|gb|EFK68732.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 124-1] gi|300847694|gb|EFK75454.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 78-1] gi|306906626|gb|EFN37138.1| ATP-dependent DNA helicase Rep [Escherichia coli W] gi|308120164|gb|EFO57426.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 145-7] gi|315063074|gb|ADT77401.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia coli W] gi|315254141|gb|EFU34109.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 85-1] gi|323167632|gb|EFZ53337.1| ATP-dependent DNA helicase Rep [Shigella sonnei 53G] gi|323182551|gb|EFZ67955.1| ATP-dependent DNA helicase Rep [Escherichia coli 1357] gi|323380863|gb|ADX53131.1| ATP-dependent DNA helicase Rep [Escherichia coli KO11] gi|323943819|gb|EGB39914.1| ATP-dependent DNA helicase Rep [Escherichia coli H120] gi|323959035|gb|EGB54704.1| ATP-dependent DNA helicase Rep [Escherichia coli H489] gi|323969380|gb|EGB64679.1| ATP-dependent DNA helicase Rep [Escherichia coli TA007] gi|324115758|gb|EGC09693.1| ATP-dependent DNA helicase Rep [Escherichia coli E1167] gi|330908080|gb|EGH36599.1| ATP-dependent DNA helicase Rep [Escherichia coli AA86] gi|331041472|gb|EGI13620.1| ATP-dependent DNA helicase Rep [Escherichia coli M605] gi|331067534|gb|EGI38938.1| ATP-dependent DNA helicase Rep [Escherichia coli TA280] gi|332084707|gb|EGI89895.1| ATP-dependent DNA helicase Rep [Shigella boydii 5216-82] Length = 673 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + + I R + Sbjct: 146 LKTPSQAAASAIGERDRI 163 >gi|300940007|ref|ZP_07154632.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 21-1] gi|300455140|gb|EFK18633.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 21-1] Length = 673 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + + I R + Sbjct: 146 LKTPSQAAASAIGERDRI 163 >gi|256021480|ref|ZP_05435345.1| ATP-dependent DNA helicase Rep [Shigella sp. D9] gi|332105066|gb|EGJ08412.1| DNA helicase and single-stranded DNA-dependent ATPase [Shigella sp. D9] Length = 673 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + + I R + Sbjct: 146 LKTPSQAAASAIGERDRI 163 >gi|254519350|ref|ZP_05131406.1| helicase [Clostridium sp. 7_2_43FAA] gi|226913099|gb|EEH98300.1| helicase [Clostridium sp. 7_2_43FAA] Length = 872 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 84/199 (42%), Gaps = 40/199 (20%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 ++ + + L+ ++ + + A+AG+GKT+ L R+ ++ +N A S +LC+T T A Sbjct: 1 MTLNQEQALVVNELENNILLLASAGTGKTNTLSSRISNIIKSNKAKASEILCITFTNKAC 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AEM R+ +I+ + + ++T Sbjct: 61 AEMRERIEKIVGEEAK--------------------------------------DITIRT 82 Query: 136 IHAFCEAIMQQFPLE-ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 H+FC +++ + +I + F + DEE S+++I+E + L EL K Sbjct: 83 FHSFCYDLIKSDAKKRTDIFTDFIVFDEEDSREIIKECNYYNYSVFKLQQFIELTKIERA 142 Query: 195 ILEISNDEDIETLISDIIS 213 L+ ++ ++ I + Sbjct: 143 KLDFYSNNILDDYSKTIAN 161 >gi|78213176|ref|YP_381955.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus sp. CC9605] gi|78197635|gb|ABB35400.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp. CC9605] Length = 1226 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 42/171 (24%), Positives = 69/171 (40%), Gaps = 19/171 (11%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT L LRL+ HP LL +T T AAA E+ R+ + + Sbjct: 34 LLEASAGTGKTFALAHLCLRLITEADHPLEALLVVTFTDAAAEELRSRIGQRLQQALQGL 93 Query: 94 DEILSAEIT---------KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 +++ + G +P + RHLL+ LE + TIH FC + Sbjct: 94 EQLDQGMKAYAPDPVLADWLAGSEPGDARQRWIRHLLV-ALEQLDRADITTIHGFCRRSL 152 Query: 145 QQFPLEANITSHFAIAD---EEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 ++ L S+ A + + + L E + +L + KA Sbjct: 153 RRLAL-----SNAAAMEPQLDTDATALQAEVVQDLWQQELLSLPPDQFKAL 198 >gi|157163251|ref|YP_001460569.1| ATP-dependent DNA helicase Rep [Escherichia coli HS] gi|170022195|ref|YP_001727149.1| ATP-dependent DNA helicase Rep [Escherichia coli ATCC 8739] gi|170680827|ref|YP_001746097.1| ATP-dependent DNA helicase Rep [Escherichia coli SMS-3-5] gi|256026126|ref|ZP_05439991.1| ATP-dependent DNA helicase Rep [Escherichia sp. 4_1_40B] gi|300947366|ref|ZP_07161562.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 116-1] gi|300955220|ref|ZP_07167615.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 175-1] gi|301028989|ref|ZP_07192146.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 196-1] gi|301646157|ref|ZP_07246056.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 146-1] gi|307140478|ref|ZP_07499834.1| ATP-dependent DNA helicase Rep [Escherichia coli H736] gi|312971940|ref|ZP_07786114.1| ATP-dependent DNA helicase Rep [Escherichia coli 1827-70] gi|331665424|ref|ZP_08366323.1| ATP-dependent DNA helicase Rep [Escherichia coli TA143] gi|157068931|gb|ABV08186.1| ATP-dependent DNA helicase Rep [Escherichia coli HS] gi|169757123|gb|ACA79822.1| ATP-dependent DNA helicase Rep [Escherichia coli ATCC 8739] gi|170518545|gb|ACB16723.1| ATP-dependent DNA helicase Rep [Escherichia coli SMS-3-5] gi|299878032|gb|EFI86243.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 196-1] gi|300317874|gb|EFJ67658.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 175-1] gi|300453028|gb|EFK16648.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 116-1] gi|301075626|gb|EFK90432.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 146-1] gi|310334317|gb|EFQ00522.1| ATP-dependent DNA helicase Rep [Escherichia coli 1827-70] gi|315618523|gb|EFU99109.1| ATP-dependent DNA helicase Rep [Escherichia coli 3431] gi|323938917|gb|EGB35136.1| ATP-dependent DNA helicase Rep [Escherichia coli E482] gi|331057322|gb|EGI29311.1| ATP-dependent DNA helicase Rep [Escherichia coli TA143] Length = 673 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + + I R + Sbjct: 146 LKTPSQAAASAIGERDRI 163 >gi|184200505|ref|YP_001854712.1| UvrD/REP helicase family protein [Kocuria rhizophila DC2201] gi|183580735|dbj|BAG29206.1| UvrD/Rep helicase family protein [Kocuria rhizophila DC2201] Length = 1145 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 S Q+ +E + T+ + + + P V A AGSGKT + RV L+ A P Sbjct: 14 SPQDIAEALGDFPPTEQQAEVIASPLTPRLVVAGAGSGKTTTMSDRVTWLVANGLARPEE 73 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T+ AA E+S R+ + H ++P D + A Sbjct: 74 ILGVTFTRKAAGELSQRIATKLRMLRHAG-----------LIEEPGGDDDAPA------A 116 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 ++ P V T H++ ++++ + L I S + + Q+ +L E + Sbjct: 117 VQEP---TVSTYHSYANSLVRSYGLRLGIESDTVLLGQAQAWQLASELVR 163 >gi|30064927|ref|NP_839098.1| ATP-dependent DNA helicase Rep [Shigella flexneri 2a str. 2457T] gi|56480432|ref|NP_709581.2| ATP-dependent DNA helicase Rep [Shigella flexneri 2a str. 301] gi|30043188|gb|AAP18909.1| rep helicase [Shigella flexneri 2a str. 2457T] gi|56383983|gb|AAN45288.2| rep helicase [Shigella flexneri 2a str. 301] gi|313647777|gb|EFS12224.1| ATP-dependent DNA helicase Rep [Shigella flexneri 2a str. 2457T] Length = 673 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + GL + T H Sbjct: 67 VGQTLGRKE-------------------------------------AHGLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + + I R + Sbjct: 146 LKTPSQAAASAIGERDRI 163 >gi|99034367|ref|ZP_01314391.1| hypothetical protein Wendoof_01000810 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 149 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 56/168 (33%), Gaps = 43/168 (25%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 ++ + L++ +Q ++ R + A AG+GKT + R+ ++ A+ +L + Sbjct: 1 MNDYLSLLN--PEQQSAVTNIDRPVLILAGAGTGKTRTITSRIAHIIRNGHAYSDEILAV 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RVLE+ Sbjct: 59 TFTNKAANEMVSRVLELTGT---------------------------------------- 78 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T HA I++ + +F I + ++I+ Sbjct: 79 NIPWLGTFHAIAAKILRLHAEIVGLNPNFTIIGVDDQLQVIKNIINEI 126 >gi|256828187|ref|YP_003156915.1| exodeoxyribonuclease V, beta subunit [Desulfomicrobium baculatum DSM 4028] gi|256577363|gb|ACU88499.1| exodeoxyribonuclease V, beta subunit [Desulfomicrobium baculatum DSM 4028] Length = 1168 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 4/150 (2%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 + + A+AG+GKT+ L +RLLL N +L +T T AA E+ R+ + ++ Sbjct: 12 DGTTLIEASAGTGKTYTLTGLFVRLLLEKNLTVDQILVVTFTDAATEELRGRIRKRLSDV 71 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + + L A+ +++ + + A L L ++ TIH FC+ ++ + Sbjct: 72 AGVLAGELEAD-EELEWDLLARFGGTDAARRLELALRNFDLAQIFTIHGFCQRMLGRNGF 130 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLAS 179 E ++ F E L + S Sbjct: 131 EC--SALFDTQLEPDLSDLRRQVCVDFWRS 158 >gi|59713128|ref|YP_205904.1| DNA helicase and single-stranded DNA-dependent ATPase [Vibrio fischeri ES114] gi|59481229|gb|AAW87016.1| DNA helicase and single-stranded DNA-dependent ATPase [Vibrio fischeri ES114] Length = 671 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPQQDEAVKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGKQESR-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H+ I+++ + + F++ D++ L++E + + + + L++ I Sbjct: 84 FHSLGLDIIRREYKVLGLKAGFSLFDDQDQLALLKELTEKQID----GDKDLLRQLLSSI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|320354828|ref|YP_004196167.1| exodeoxyribonuclease V subunit beta [Desulfobulbus propionicus DSM 2032] gi|320123330|gb|ADW18876.1| exodeoxyribonuclease V, beta subunit [Desulfobulbus propionicus DSM 2032] Length = 1172 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 5/154 (3%) Query: 35 WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT+ L +RLLL +L +T T+AA AE+ R+ + + Sbjct: 16 LLEASAGTGKTYTLALLFVRLLLERGLAIDQILVVTFTRAATAELRDRIRTRLREALDVL 75 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 A+ ++ + S+ R L L + TIH FC+ I++ E+++ Sbjct: 76 HGRRDADPLLLRLLTALPAARSRQR--LEDALVRMDEAAIHTIHGFCQRILRDHAFESSL 133 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 F + E L++E + + + +EE Sbjct: 134 P--FDLELRESEAALVQEVLEDFWRTHLYPASEE 165 >gi|123446867|ref|XP_001312180.1| UvrD/REP helicase family protein [Trichomonas vaginalis G3] gi|121894018|gb|EAX99250.1| UvrD/REP helicase family protein [Trichomonas vaginalis G3] Length = 727 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 43/166 (25%) Query: 16 LISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + EQ A + ++ A AGSGKT L+ R+ ++ +P +L +T T+ Sbjct: 5 YLDDLNEEQRAAVTASIEDPLFIYAGAGSGKTRTLICRIAYMIDQGVNPENILAMTFTRK 64 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA E+ R+ I + Sbjct: 65 AADEIRERLKTFIGPKASSVTT-------------------------------------- 86 Query: 134 QTIHAFCEAIMQQFPLEANITSH---FAIADEEQSKKLIEEAKKST 176 T H C I++Q P + + F IAD + +K+I+ A + Sbjct: 87 STFHQLCLNILKQNPFILGFSGNDQTFHIADNTEQRKIIKNAVNAL 132 >gi|197336384|ref|YP_002157309.1| ATP-dependent DNA helicase Rep [Vibrio fischeri MJ11] gi|197317874|gb|ACH67321.1| ATP-dependent DNA helicase Rep [Vibrio fischeri MJ11] Length = 671 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPQQDEAVKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGKQESR-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H+ I+++ + + F++ D++ L++E + + + + L++ I Sbjct: 84 FHSLGLDIIRREYKVLGLKAGFSLFDDQDQLALLKELTEKQID----GDKDLLRQLLSSI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|313682829|ref|YP_004060567.1| uvrd/rep helicase [Sulfuricurvum kujiense DSM 16994] gi|313155689|gb|ADR34367.1| UvrD/REP helicase [Sulfuricurvum kujiense DSM 16994] Length = 1102 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 88/216 (40%), Gaps = 28/216 (12%) Query: 29 DPTRSAWVSANAGSGKTHILVQRVLRLL------------------LANAHPSTLLCLTH 70 D +SA AGSGKT+ L +R + +L L+ A P+ ++ +T+ Sbjct: 5 DIFNHVAISAGAGSGKTYTLSRRYINILVGFNLFYEGESSRPMLEALSPARPNEIVTITY 64 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQG-----KKPNKSDMSKARHLLITIL 125 T+A A EM R+ +I + L + ++ + + +L L Sbjct: 65 TEAGALEMKSRIFSLIQNTLRYIEGKLDLKHDDYDSIHKALNPLDQPWIEHVQSMLEHSL 124 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA---SIML 182 + TIH++C +++QF + S I +++ +A ++ L+ I+ Sbjct: 125 RYLSSATISTIHSYCLDLIEQFGDYLKLDSKPQIIGDDEKILAYTDAYRAVLSDEPEIIK 184 Query: 183 DNNEELKKAFYEILEISNDEDIETLISDIISNRTAL 218 + N+ + + Y++ +I+ + +N L Sbjct: 185 EINQTI--SLYKLSQIAQKYSFNAQFREAFNNYALL 218 >gi|258652355|ref|YP_003201511.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233] gi|258555580|gb|ACV78522.1| UvrD/REP helicase [Nakamurella multipartita DSM 44233] Length = 1106 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 80/218 (36%), Gaps = 25/218 (11%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 S + + + L + T + + P V A AGSGKT + RV+ L+ P Sbjct: 3 SAIDLARELGLPAPTAEQAAVIEAPLEPGLVVAGAGSGKTETMAARVVYLIATGQVRPEQ 62 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L LT T+ AAA ++ R+ + + + L G + +D+ Sbjct: 63 VLGLTFTRKAAAALAQRIRQRLALLTTLRPRT---------GSGRSPADLP--------- 104 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD- 183 G V T HAF ++ F A I + + +L ++ D Sbjct: 105 ---AGDPDVSTYHAFGGRLIADFGPLAGIEPAARVLTPTGAWQLARRVVGRWDGDLLTDL 161 Query: 184 NNEELKKAFYEILEISNDE--DIETLISDIISNRTALK 219 +++ + I D D++ L ++ + L+ Sbjct: 162 GPDQVTERLLAISSALADHLTDVDLLSDELATVLDRLR 199 >gi|115377513|ref|ZP_01464713.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1] gi|310820075|ref|YP_003952433.1| ATP-dependent DNA helicase, uvrd/rep family [Stigmatella aurantiaca DW4/3-1] gi|115365453|gb|EAU64488.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1] gi|309393147|gb|ADO70606.1| ATP-dependent DNA helicase, UvrD/REP family [Stigmatella aurantiaca DW4/3-1] Length = 688 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 58/165 (35%), Gaps = 41/165 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---NAHPSTLLCLTH 70 +DL ++ V A AGSGKT ++ R++ +L A +L +T Sbjct: 1 MDLSKLNPPQREAVITTEGPLLVLAGAGSGKTRVITHRIVHILNERPGGALARNILAVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R++++ +A+ +L Sbjct: 61 TNKAATEMKERLVKMAG---------------------------PRAQGVL--------- 84 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V T HAF ++++ FAIAD LI A + Sbjct: 85 --VCTFHAFGAEMLREDIHRLGWPRKFAIADMGDQLALIRRAMRD 127 >gi|218701309|ref|YP_002408938.1| ATP-dependent DNA helicase Rep [Escherichia coli IAI39] gi|218371295|emb|CAR19128.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia coli IAI39] Length = 673 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + + I R + Sbjct: 146 LKTPSQAAASAIGERDRI 163 >gi|293364067|ref|ZP_06610803.1| putative ATP-dependent DNA helicase PcrA [Mycoplasma alligatoris A21JP2] gi|292552557|gb|EFF41331.1| putative ATP-dependent DNA helicase PcrA [Mycoplasma alligatoris A21JP2] Length = 722 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 57/165 (34%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHT 71 ++L+ EQ LA S + A AGSGKT +L +++ L+ A P +L +T T Sbjct: 6 VNLLKDLNPEQKLAVQYFDSHLRIIAGAGSGKTKVLTRKIAYLINEMAILPRQILAVTFT 65 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 A+ EM R+ + + L Sbjct: 66 NKASNEMHQRIAQYCSGE--------------------------------------MNKL 87 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H C I+++ + F I DE +I+ K Sbjct: 88 NVFTFHGLCVHILRREAEKLGYKQDFQIIDESDKTLIIKNIYKRF 132 >gi|294794415|ref|ZP_06759551.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp. 3_1_44] gi|294454745|gb|EFG23118.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp. 3_1_44] Length = 862 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 81/212 (38%), Gaps = 44/212 (20%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 + +Q + + ++ + A+AG+GKT+ L RV L+ A +LC+T T AA EM Sbjct: 4 NREQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGGYAKAENILCMTFTNKAANEM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ ++ + + + V T H+ Sbjct: 64 KGRIQSLVGSPAKAVE--------------------------------------VSTFHS 85 Query: 139 FCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC I+QQ + + I DEE K+L E + L + N + K + + Sbjct: 86 FCFFILQQEGKRNETLYTDVTIFDEEDCKELSEPYRPGKLREMSFANVIAMVKEYRSLYG 145 Query: 198 ISNDE---DIETLISDI-ISNRTALKLIFFFF 225 +D+ D + I + R A++ F F Sbjct: 146 FYSDDLLGDYKRTIERLQKEQREAIEQQFSSF 177 >gi|242280176|ref|YP_002992305.1| exodeoxyribonuclease V [Desulfovibrio salexigens DSM 2638] gi|242123070|gb|ACS80766.1| Exodeoxyribonuclease V [Desulfovibrio salexigens DSM 2638] Length = 1059 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 47/214 (21%), Positives = 75/214 (35%), Gaps = 49/214 (22%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS----------------TLLCLTHTKAAAAEMS 79 V A+AGSGKT+ L R L LL ++ +T T AAAEM Sbjct: 5 VKASAGSGKTYELTGRFLSLLAGAQEEDSVPVCKSSQGKGYCWPEIMAVTFTNKAAAEMK 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 RV+ + + + K A+ LI IL+ L ++TI + Sbjct: 65 ERVIRSLKNRALDIEGDGLGADWKPLD----------AKKQLIPILQRYNRLNIRTIDSL 114 Query: 140 CEAIMQQFPLEANITSHFAIADE----------------EQSKKLIEEAKKSTLASIMLD 183 +++ F LE ++ F + E E+ L +E + S++L Sbjct: 115 LNLLVRIFALELGLSPEFELLFEPQALFEPNFNKFLAQCEEGDLLRKELLDDAVDSLVLK 174 Query: 184 NN-------EELKKAFYEILEISNDEDIETLISD 210 E+++ IL D E L Sbjct: 175 EEKQGFWLAEQMRMRLLSILTHVIDHPAERLTDQ 208 >gi|294789337|ref|ZP_06754575.1| ATP-dependent DNA helicase Rep [Simonsiella muelleri ATCC 29453] gi|294482762|gb|EFG30451.1| ATP-dependent DNA helicase Rep [Simonsiella muelleri ATCC 29453] Length = 663 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 54/160 (33%), Gaps = 38/160 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q + +V A AGSGKT ++ +++ L+ P + +T T AA Sbjct: 1 MKLNPEQQQAVEYIGGALFVLAGAGSGKTRVITEKIAYLITQAGYKPHHIAAITFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + GL V T Sbjct: 61 KEMQERISHRLGK-------------------------------------NQTRGLIVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 HA I+++ N +F+I D S KLI E S Sbjct: 84 FHALGMRILREEATNLNYKKNFSILDSSDSAKLIGEMLAS 123 >gi|301057782|ref|ZP_07198851.1| UvrD/REP helicase [delta proteobacterium NaphS2] gi|300448093|gb|EFK11789.1| UvrD/REP helicase [delta proteobacterium NaphS2] Length = 719 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 71/199 (35%), Gaps = 44/199 (22%) Query: 18 SQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + EQL A + V A AGSGKT LV RV RL+ P +L LT T+ +A Sbjct: 9 NVLNPEQLKAVMTLSGPVLVIAGAGSGKTRTLVYRVARLVETGVPPEAILLLTFTRKSAQ 68 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM +R S++S R ++ T Sbjct: 69 EMLNR-----------------------------ASELSDKRCRFVSG---------GTF 90 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 HA +++ E + F I D +EE +S + + + + + Sbjct: 91 HALAFRVLRNHAKELGYQNSFTILDRSD----MEEVLRSLVPDLKMSDKPARFPKRGTLA 146 Query: 197 EISND-EDIETLISDIISN 214 I + ++E I ++ N Sbjct: 147 NIISKAANLEQPIEALMMN 165 >gi|120552955|ref|YP_957306.1| exodeoxyribonuclease V, beta subunit [Marinobacter aquaeolei VT8] gi|120322804|gb|ABM17119.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Marinobacter aquaeolei VT8] Length = 1241 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 82/207 (39%), Gaps = 23/207 (11%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPST----------LLCLTHTKAAAAEMSH 80 SA + A+AG+GKT + +RL+L + LL +T T+AA E+ Sbjct: 20 NGSALIEASAGTGKTFTIAILYVRLVLGHGQSEDSPLQNLLPPNLLVVTFTEAATKELRD 79 Query: 81 RVLEIITAWSH--------LSDEILSAEITKIQGKK-PNKSDMSKARHLLITILETPGGL 131 R+ +T + L +A I K++ P+ + + R L+ E Sbjct: 80 RIRTRLTQAAEVFSEAADSLEPTPETALIHKLRDDSYPDPASWPECRKKLLLAAEWMDEA 139 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V TIH FC ++ + ++ S F + E +L+E+ + + + L Sbjct: 140 AVSTIHGFCNRMLSEHAFDSG--SLFKLTLETDQSELLEDVARDYWRTFVYPLPPALMD- 196 Query: 192 FYEILEISNDEDIETLISDIISNRTAL 218 + D+ + ++I + AL Sbjct: 197 -EALSHWKTPTDLRKAVRNLIDDPAAL 222 >gi|253998774|ref|YP_003050837.1| UvrD/REP helicase [Methylovorus sp. SIP3-4] gi|253985453|gb|ACT50310.1| UvrD/REP helicase [Methylovorus sp. SIP3-4] Length = 665 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 39/177 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 ++S+ S Q A V A AGSGKT ++ Q++ L+ P + +T T Sbjct: 1 MLSKLNSPQREAVKYLDGPLLVLAGAGSGKTRVITQKIAYLIEQCGYQPREIAAITFTNK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++ S GL + Sbjct: 61 AAREMQERVGHLLEGKSAK-------------------------------------GLTI 83 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 T H+ +++Q F+I D S K++ + +T ++ ++ + Sbjct: 84 ATFHSLGLQMLRQEAALLGYKPQFSILDSSDSYKILADVLATTDKQLLRRTQSQISQ 140 >gi|238918066|ref|YP_002931580.1| ATP-dependent DNA helicase Rep [Edwardsiella ictaluri 93-146] gi|238867634|gb|ACR67345.1| ATP-dependent DNA helicase Rep, putative [Edwardsiella ictaluri 93-146] Length = 726 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + + +T T AA EM R Sbjct: 58 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRVCGYQARHIAAVTFTNKAAREMKER 117 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 118 VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 140 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D++ L+ + + L + +L++ I ND Sbjct: 141 EIIKREYKALGMKSNFSLFDDQDQLALLTDLTERWLEK----DKTQLQQLIATISNWKND 196 >gi|90407425|ref|ZP_01215609.1| exodeoxyribonuclease V beta chain [Psychromonas sp. CNPT3] gi|90311456|gb|EAS39557.1| exodeoxyribonuclease V beta chain [Psychromonas sp. CNPT3] Length = 1196 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 12/170 (7%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT+ + +RLLL + +L +T T+AA AE+ R+ + Sbjct: 22 LIEASAGTGKTYTIASLFIRLLLGHGDENSHQTPLSVDKILVVTFTEAATAELRSRIRDR 81 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 I + L + + +Q + ++ LL V TIH FC+ ++ Sbjct: 82 IIS-VRLDFMLGKSADPFVQALLDSSLEIDADIRLLRFAELQMDEAAVYTIHGFCQRMLM 140 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 Q E+ S F E LIE+A + ++ L + Y Sbjct: 141 QNAFESG--SLFEQKLLEDDSLLIEQACNDFWRTHFYGLSDNLTELIYSY 188 >gi|225023329|ref|ZP_03712521.1| hypothetical protein EIKCOROL_00187 [Eikenella corrodens ATCC 23834] gi|224943974|gb|EEG25183.1| hypothetical protein EIKCOROL_00187 [Eikenella corrodens ATCC 23834] Length = 1241 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 68/172 (39%), Gaps = 6/172 (3%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 L P + V A+AG+GKT+ + RL+ L P +L +T T+AA AE+ +R+ Sbjct: 7 AQLPLPPQGTHLVEASAGTGKTYSIAALFTRLVVLEGWAPENILVVTFTEAATAELKNRL 66 Query: 83 LEIIT---AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + A + + + + K + SK L L + TIH F Sbjct: 67 RARLGEVLAALQSGETPADEFLQHLLAEALAKQERSKLILQLQAALSGFDTAAIYTIHGF 126 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 C ++ + + + + +L+ A + + D+ + + A Sbjct: 127 CLRVLGDYAFLCGVPFELETGPVDTAARLV--AAQDFWREHVADHPQNARIA 176 >gi|146329291|ref|YP_001209094.1| DNA helicase II [Dichelobacter nodosus VCS1703A] gi|146232761|gb|ABQ13739.1| DNA helicase II [Dichelobacter nodosus VCS1703A] Length = 712 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 58/160 (36%), Gaps = 40/160 (25%) Query: 17 ISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 +S + Q A V A AGSGKT +LVQR+ L+ +A P LL LT T A Sbjct: 7 LSGLNAAQRDAVTTKERIVRVIAGAGSGKTRVLVQRMQWLMTVAGCMPYQLLALTFTNKA 66 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ + + + L + Sbjct: 67 AQEMRQRLEQ--------------------------------------SAACSLNQLWMG 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 T H+ C I++Q+ F + D + +LI+ + Sbjct: 89 TFHSICLRILRQYAELVGWEKSFIVIDSDDQLRLIKRLLQ 128 >gi|288817811|ref|YP_003432158.1| ATP-dependent DNA helicase [Hydrogenobacter thermophilus TK-6] gi|288787210|dbj|BAI68957.1| ATP-dependent DNA helicase [Hydrogenobacter thermophilus TK-6] gi|308751409|gb|ADO44892.1| UvrD/REP helicase [Hydrogenobacter thermophilus TK-6] Length = 657 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 65/189 (34%), Gaps = 42/189 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S++ + + A AGSGKT L ++ L++ +L LT T AA E+ Sbjct: 3 NPSQERAVKHFGKPLLIVAGAGSGKTKTLTYKLEHLVVKRGLRQDRILILTFTNKAAREI 62 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R++++ T H+ Sbjct: 63 RERIVKLTNKEVP----------------------------------------WAGTFHS 82 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNNEELKKAFYEILE 197 I++Q + I F+I DE+ KK+++E + L+ ML+ + E L Sbjct: 83 IALKILRQEGYKMGIDPSFSIIDEDDRKKILKEVLRRMNLSKDMLEVANNYITSRRESLR 142 Query: 198 ISNDEDIET 206 D +E Sbjct: 143 EPEDSTLEE 151 >gi|118580565|ref|YP_901815.1| exodeoxyribonuclease V, beta subunit [Pelobacter propionicus DSM 2379] gi|118503275|gb|ABK99757.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pelobacter propionicus DSM 2379] Length = 1203 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 12/161 (7%) Query: 35 WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT+ + LRL++ + P +L +T+T+AA E+ R+ I Sbjct: 16 LIEASAGTGKTYAIACLYLRLVIESDLTPEQILVVTYTEAATEELRGRIRSRIRQALDTF 75 Query: 94 DEILSAE---ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 +S + + +Q AR+ L L++ + TIH FC +Q E Sbjct: 76 SGTVSKDPFLLGLVQKVNKEGPGEDIARNRLDRALKSFDLASIFTIHGFCLRALQDNAFE 135 Query: 151 ANITSHFAIADEE---QSKKLIEEAKKSTLASIMLDNNEEL 188 + ++ D E L++E L Sbjct: 136 SG-----SLYDTELITDQADLLQEVVDDFWRRTFFSEPAPL 171 >gi|261343043|ref|ZP_05970901.1| ATP-dependent DNA helicase Rep [Enterobacter cancerogenus ATCC 35316] gi|288314606|gb|EFC53544.1| ATP-dependent DNA helicase Rep [Enterobacter cancerogenus ATCC 35316] Length = 674 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKTVLQQLISTISNWKND 145 >gi|226947150|ref|YP_002802223.1| exodeoxyribonuclease V subunit beta [Azotobacter vinelandii DJ] gi|226722077|gb|ACO81248.1| exodeoxyribonuclease V, beta subunit [Azotobacter vinelandii DJ] Length = 1226 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 12/158 (7%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT + LRL+L + P +L +T T AA E+ R+ Sbjct: 19 GSRLIEASAGTGKTFTISALYLRLVLGHGGEAGFSRELLPPEILVVTFTDAATRELRDRI 78 Query: 83 LEIITAWSHL-SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + + + +E + + + L + V TIH +C+ Sbjct: 79 RARLVEAAKVFREEAPGDGLLRQLRADFSAERWPACARRLDIAAQWMDEAAVSTIHGWCQ 138 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 ++++ ++ S F E +L+ E + Sbjct: 139 RMLREHAFDSG--SLFTQTLETDHGELLAEVVRDYWRQ 174 >gi|313200859|ref|YP_004039517.1| uvrd/rep helicase [Methylovorus sp. MP688] gi|312440175|gb|ADQ84281.1| UvrD/REP helicase [Methylovorus sp. MP688] Length = 665 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 39/177 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 ++S+ S Q A V A AGSGKT ++ Q++ L+ P + +T T Sbjct: 1 MLSKLNSPQREAVKYLDGPLLVLAGAGSGKTRVITQKIAYLIEQCGYQPREIAAITFTNK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++ S GL + Sbjct: 61 AAREMQERVGHLLEGKSAK-------------------------------------GLTI 83 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 T H+ +++Q F+I D S K++ + +T ++ ++ + Sbjct: 84 ATFHSLGLQMLRQEAALLGYKPQFSILDSSDSYKILADVLATTDKQLLRRTQSQISQ 140 >gi|262193706|ref|YP_003264915.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365] gi|262077053|gb|ACY13022.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365] Length = 688 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 53/164 (32%), Gaps = 36/164 (21%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 + +DL ++ + V A AGSGKT ++ R++RLL + P + LT Sbjct: 1 MQNMDLAKLNTPQREAVLHGSGPVLVLAGAGSGKTRVITYRIVRLLRSGIPPQAIAALTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM RV ++ T Sbjct: 61 TNRAAEEMRERVAALLGDRK------------------------------------TASM 84 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 L + T H+ I++ F I D ++ E + Sbjct: 85 LTMGTFHSLGLRILRSEHEAMGYPRGFVIYDTSDQLGVVRELLR 128 >gi|95929099|ref|ZP_01311844.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684] gi|95135000|gb|EAT16654.1| UvrD/REP helicase [Desulfuromonas acetoxidans DSM 684] Length = 676 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 38/161 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 +DL+ + ++ + V A AGSGKT ++ R+ LL ++ LT T Sbjct: 1 MDLMQLNEPQRQAVLHTEGALLVLAGAGSGKTRVITCRIGHLL-ERVPAEQIVALTFTNK 59 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV+E + GL + Sbjct: 60 AAREMRDRVVEQVGRGKAK-------------------------------------GLTI 82 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 T H+ I++Q + +F+I +L+ + + Sbjct: 83 STFHSLGVRILRQEIEQLGYKKNFSIYPTSDQLRLVRDMVQ 123 >gi|282858262|ref|ZP_06267448.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010] gi|282588971|gb|EFB94090.1| UvrD/REP helicase [Prevotella bivia JCVIHMP010] Length = 1131 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 76/168 (45%), Gaps = 6/168 (3%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AGSGKT L + +L+ N + +L +T T A EM R+L + + Sbjct: 15 ASAGSGKTFTLTVEYISILVKNPEDYNKMLAVTFTNKATQEMKLRILSQLYGIGNGLPSS 74 Query: 97 LSAEIT-KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + + K + S + A ++L + +VQTI AF + +++ E +T+ Sbjct: 75 DNYLLQVKAKTGLTETSIRNNALYILEKLTHEYQNFRVQTIDAFFQTVLRNLGKELGLTA 134 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 + + + ++++ +A + S+ N+ + + E + + +ED Sbjct: 135 NLRV--DLNTQQVEAKAVDQLIDSL--RENDPMLRWIDEYISSNIEED 178 >gi|149910376|ref|ZP_01899018.1| putative exodeoxyribonuclease V [Moritella sp. PE36] gi|149806524|gb|EDM66493.1| putative exodeoxyribonuclease V [Moritella sp. PE36] Length = 1190 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 72/194 (37%), Gaps = 26/194 (13%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA--------------HPSTLLCLTHTKAAAAEMSH 80 + A+AG+GKT + LRLLL + + +L +T T+AA AE+ Sbjct: 19 LIEASAGTGKTFTIASLYLRLLLGHGGDNAYNKEGQIEALNVDQILVVTFTEAATAELRD 78 Query: 81 RVLEII-TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ I A S + + N+ D ++ L+ + TIH F Sbjct: 79 RIRARIHQARIAFSIGNSDDPVISLLLTDINELDYARCAKSLLAAERQMDEAAIYTIHGF 138 Query: 140 CEAIMQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 C+ +++Q E+ S F I DE Q L A S + + + Sbjct: 139 CQRMLKQNAFESGALFESEF-ITDESQ---LKFNAIADFWRSHFYRYKDGMIDMVHSFWS 194 Query: 198 ISNDEDIETLISDI 211 + L+ DI Sbjct: 195 SP-----QALLRDI 203 >gi|57238970|ref|YP_180106.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden] gi|57161049|emb|CAH57956.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden] Length = 639 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 58/174 (33%), Gaps = 42/174 (24%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D I+ +Q A ++ + A AG+GKT + R+ +L N A PS +L +T T Sbjct: 3 DYITSLNEDQKKAVTNINGPILILAGAGTGKTRTITSRIAYILNNNFALPSQILAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ E L + Sbjct: 63 KAANEMLSRINE----------------------------------------LTCASNIW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + T HA I++Q + S F I + ++I+ D + Sbjct: 83 LGTFHAIATKILRQHAEAVGLKSDFTIIGTDDQLQVIKTIVNDMHPEYASDAYK 136 >gi|300904028|ref|ZP_07121910.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 84-1] gi|300403980|gb|EFJ87518.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 84-1] Length = 673 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + + I R + Sbjct: 146 LKPPSQAAASAIGERDRI 163 >gi|237806835|ref|YP_002891275.1| exodeoxyribonuclease V, beta subunit [Tolumonas auensis DSM 9187] gi|237499096|gb|ACQ91689.1| exodeoxyribonuclease V, beta subunit [Tolumonas auensis DSM 9187] Length = 1175 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 19/159 (11%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRLLL + +L +T T+AA AE+ R+L+ Sbjct: 17 LIEASAGTGKTYTIAGLYLRLLLGHGSGDAAFGTPLPVDRILVVTFTEAATAELRQRILK 76 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I + + E+ ++ IQ D A L+T + TIH FC+ ++ Sbjct: 77 AIRD-TRRALEVGHSDDQLIQNLISECPDQKLALRQLLTAERQMDEAAIYTIHGFCQRML 135 Query: 145 QQFPLEANITSHFAIADEE---QSKKLIEEAKKSTLASI 180 Q E+ ++ D E + + L A I Sbjct: 136 TQNAFESG-----SLFDNEFLTEEQTLRAGAVADFWRHI 169 >gi|254586149|ref|XP_002498642.1| ZYRO0G15224p [Zygosaccharomyces rouxii] gi|238941536|emb|CAR29709.1| ZYRO0G15224p [Zygosaccharomyces rouxii] Length = 1161 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 38/163 (23%) Query: 17 ISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 S +Q +A+ DP + V A G+GKT +L RV L+L + P ++ T T Sbjct: 11 FSSLNLQQQVAAKYDPDLAVQVIAGPGTGKTKVLTSRVAYLMLHHKIRPQDIIVTTFTNK 70 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R++ ++ S L + Sbjct: 71 AAKEMIDRLVSMLRDTSI-----------------------------------RVSDLMI 95 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ C I+ ++ + + I DE++ + ++ + Sbjct: 96 GTFHSVCLRILSRYGHRIGLMKDWRIIDEKEIEVIVHNMVEKM 138 >gi|281180827|dbj|BAI57157.1| DNA helicase Rep [Escherichia coli SE15] Length = 673 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 69/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRSCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + ++ R + Sbjct: 146 LKTPAQAAAEAKGERDRI 163 >gi|218885868|ref|YP_002435189.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756822|gb|ACL07721.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1161 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 75/203 (36%), Gaps = 46/203 (22%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS---------------TLLCLTHTKAAAAEMSH 80 + A+AGSGKT+ L +R L LL +L +T T AA+EM Sbjct: 9 IKASAGSGKTYTLTRRFLSLLAGARDEDGRACSLAVEGGHCWPDILAVTFTNKAASEMKE 68 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 RV+ ++ + L+D + + P ++A + IL G L ++TI + Sbjct: 69 RVIRLLKEHA-LADPAQARKDGGDGAWPP-----ARAARWVDIILRRYGALNIRTIDSLL 122 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 +++ LE ++ F + E + Y+++ Sbjct: 123 TMLVRLAALELSLPPDFEPSFSPD----------------------EYFEPLYDLILDRA 160 Query: 201 DEDIETLISDIISNRTALKLIFF 223 L D+ R A +L+ F Sbjct: 161 RRGDAQLRDDV---RDACRLLLF 180 >gi|170769825|ref|ZP_02904278.1| ATP-dependent DNA helicase Rep [Escherichia albertii TW07627] gi|170121263|gb|EDS90194.1| ATP-dependent DNA helicase Rep [Escherichia albertii TW07627] Length = 673 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRDCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + ++ R + Sbjct: 146 LKTPAQAAAEAKGERDRI 163 >gi|302553996|ref|ZP_07306338.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM 40736] gi|302471614|gb|EFL34707.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM 40736] Length = 1044 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 31/182 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T A Sbjct: 24 GIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 83 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAE++ RV + + + + + PG + Sbjct: 84 AAELAERVRKALVKAGVTDPDAIDPD-------------------------NPPGEPVIS 118 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HAF ++ L + + + +L + L ++F + Sbjct: 119 TYHAFAGRLLTDHGLRIGLEPTSRLLADATRFQLAARVLRE-----APGPYPALTRSFPD 173 Query: 195 IL 196 ++ Sbjct: 174 LV 175 >gi|283787540|ref|YP_003367405.1| ATP-dependent DNA helicase [Citrobacter rodentium ICC168] gi|282950994|emb|CBG90671.1| ATP-dependent DNA helicase [Citrobacter rodentium ICC168] Length = 677 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + L ++ L++ I ND Sbjct: 90 EIIKREYAALGMKSNFSLFDDTDQLALLKELTEGLLE----EDKVLLQQLISTISNWKND 145 >gi|15605339|ref|NP_220125.1| DNA helicase [Chlamydia trachomatis D/UW-3/CX] gi|76789347|ref|YP_328433.1| DNA helicase [Chlamydia trachomatis A/HAR-13] gi|237804958|ref|YP_002889112.1| DNA helicase [Chlamydia trachomatis B/TZ1A828/OT] gi|3329053|gb|AAC68211.1| DNA Helicase [Chlamydia trachomatis D/UW-3/CX] gi|76167877|gb|AAX50885.1| DNA helicase [Chlamydia trachomatis A/HAR-13] gi|231273258|emb|CAX10173.1| DNA helicase [Chlamydia trachomatis B/TZ1A828/OT] gi|296436144|gb|ADH18318.1| DNA helicase [Chlamydia trachomatis G/9768] gi|296437072|gb|ADH19242.1| DNA helicase [Chlamydia trachomatis G/11222] gi|296438004|gb|ADH20165.1| DNA helicase [Chlamydia trachomatis G/11074] gi|297140506|gb|ADH97264.1| DNA helicase [Chlamydia trachomatis G/9301] gi|297748738|gb|ADI51284.1| PcrA [Chlamydia trachomatis D-EC] gi|297749618|gb|ADI52296.1| PcrA [Chlamydia trachomatis D-LC] Length = 634 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 38/163 (23%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 L S+ + Q+ A + P + V A AG+GKT ++ R+L L+ + P +L +T T Sbjct: 2 LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILYLIEESRLDPKQILAITFTNK 61 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA E+ RV + + V Sbjct: 62 AANELKERVQSQCRELGYSDVPM------------------------------------V 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I+++ + S+F I D+ S+KLI++ + Sbjct: 86 STFHSLSVYILRRSIHLLDRQSNFVIYDQSDSEKLIKQCLRKL 128 >gi|237749450|ref|ZP_04579930.1| ATP-dependent DNA helicase Rep [Oxalobacter formigenes OXCC13] gi|229380812|gb|EEO30903.1| ATP-dependent DNA helicase Rep [Oxalobacter formigenes OXCC13] Length = 685 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 38/162 (23%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHT 71 ++ ++ ++Q A V A AGSGKT ++ Q++ L+ + + LT T Sbjct: 1 MNAPARLNAQQHDAVTYMDGPCLVLAGAGSGKTRVITQKIAHLIDSGVYEAKNIAALTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AAAEM R+ +++T L Sbjct: 61 NKAAAEMQERISKLLTEPK------------------------------------QASQL 84 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + T H+ I++Q E N+ F+I D + L+++ Sbjct: 85 TISTFHSLGVKILRQEAAELNLKDRFSILDSDDCFSLVQDLA 126 >gi|255311430|ref|ZP_05354000.1| DNA helicase [Chlamydia trachomatis 6276] gi|255317731|ref|ZP_05358977.1| DNA helicase [Chlamydia trachomatis 6276s] Length = 634 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 38/163 (23%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 L S+ + Q+ A + P + V A AG+GKT ++ R+L L+ + P +L +T T Sbjct: 2 LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILYLIEESRLDPKQILAITFTNK 61 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA E+ RV + + V Sbjct: 62 AANELKERVQSQCRELGYSDVPM------------------------------------V 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I+++ + S+F I D+ S+KLI++ + Sbjct: 86 STFHSLSVYILRRSIHLLDRQSNFVIYDQSDSEKLIKQCLRKL 128 >gi|329942325|ref|ZP_08291135.1| uvrD/REP helicase family protein [Chlamydophila psittaci Cal10] gi|328815235|gb|EGF85223.1| uvrD/REP helicase family protein [Chlamydophila psittaci Cal10] Length = 724 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 6/135 (4%) Query: 27 ASDPTRSA----WVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSH 80 P S ++ A+AG+GKT + Q VLR LL + H +L +T T AA E+ Sbjct: 6 IFHPETSIQGKYFLEASAGTGKTFTIEQIVLRALLEGSVSHVENILVVTFTNAATNELKL 65 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ E + + ++ + D+ + + L + + + TIH FC Sbjct: 66 RIQENLKQAASQLKSAITNPEHPLPPYLSPPCDVKQLYMQVRNALASIDRMAIFTIHGFC 125 Query: 141 EAIMQQFPLEANITS 155 ++QQ E I+ Sbjct: 126 NYVLQQHFPEMQISQ 140 >gi|321310796|ref|YP_004193125.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str. Langford 1] gi|319802640|emb|CBY93286.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str. Langford 1] Length = 639 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 K ++ P + V A AG+GKT +L++R+LR + PS +L +T T + E+S Sbjct: 4 NKGQREAVEAPFKPTLVIAGAGTGKTTVLIERILRYIDEGIEPSRILAITFTNKSKDEIS 63 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 HR+ + S ++ T HAF Sbjct: 64 HRIRKRSPVESSP---------------------------------------RIYTFHAF 84 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 ++++ + F + DE + + K Sbjct: 85 FYWVLRKDIGKLGRDKDFRVIDENDQRAIFRMILKE 120 >gi|290477141|ref|YP_003470056.1| rep helicase, a single-stranded DNA-dependent ATPase [Xenorhabdus bovienii SS-2004] gi|289176489|emb|CBJ83298.1| Rep helicase, a single-stranded DNA-dependent ATPase [Xenorhabdus bovienii SS-2004] Length = 676 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 64/183 (34%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ A + +T T AA EM Sbjct: 4 NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRACGYQARHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + GL + T H Sbjct: 64 KERVAQTLGRKETR-------------------------------------GLMISTFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + S+F++ D++ + L+++ L ++ + L+K I Sbjct: 87 LGLEIIKREYKALGMKSNFSLFDDQDQRVLLKDLTADLLE----EDKDLLQKLNSSISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|188586746|ref|YP_001918291.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351433|gb|ACB85703.1| DNA polymerase III, epsilon subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 864 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 38/155 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 S++ + S V+A G+GKT ++ R ++ P+ +LCLT T AA EM Sbjct: 17 NDSQKQAVNQIEGSLLVTAPVGTGKTSVISLRAANAIVNGFDPNKILCLTFTNRAAREMK 76 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+++ + + + ++T HA Sbjct: 77 ERIIQDLGPRAQNT--------------------------------------TIKTFHAL 98 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 C I++ I + F I DEE +K ++ + K Sbjct: 99 CAEIIRIESDILGIPADFNIFDEEDAKTILNDVIK 133 >gi|324111005|gb|EGC04992.1| ATP-dependent DNA helicase Rep [Escherichia fergusonii B253] Length = 673 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + ++ R + Sbjct: 146 LKTPAQAAAEAKGERDRI 163 >gi|313894811|ref|ZP_07828371.1| UvrD/REP helicase [Selenomonas sp. oral taxon 137 str. F0430] gi|312976492|gb|EFR41947.1| UvrD/REP helicase [Selenomonas sp. oral taxon 137 str. F0430] Length = 643 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 67/162 (41%), Gaps = 40/162 (24%) Query: 17 ISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +++ +Q L + + + A AG+GKT +V R ++ P+ +L T T+ AA Sbjct: 9 LAELNEQQRLPVQEYKTPSLIIAGAGAGKTKTIVSRTAYMIEDGVSPANILLFTFTQKAA 68 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV++ + + G+ V T Sbjct: 69 DEMRTRVIQALGDEAR--------------------------------------GIFVGT 90 Query: 136 IHAFCEAIMQQFP-LEANITSHFAIADEEQSKKLIEEAKKST 176 H+FC +++ F + T+ F+I DE+ + L+++A +S Sbjct: 91 YHSFCAKLLRYFQNRFSGYTNQFSIYDEKDAMNLLKKAMRSI 132 >gi|239995612|ref|ZP_04716136.1| exodeoxyribonuclease V, beta subunit [Alteromonas macleodii ATCC 27126] Length = 1321 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 79/206 (38%), Gaps = 17/206 (8%) Query: 15 DLISQTKSE--QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHT 71 D S T+++ ++A + A+AG+GKT + + LRLLL +L +T T Sbjct: 21 DDHSGTEAQLLDVVAMPLKGRHLIEASAGTGKTFNITRLYLRLLLEKKLTVKEILVMTFT 80 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKP------NKSDMSKARHLLITIL 125 KAA E+ R+ + + + G P N D+ ++ LL Sbjct: 81 KAATEEIKGRIAATLREALLIWQQAKDNGNEIDSGCDPVYQYLFNSCDIDESLALLKAAQ 140 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 V TIH FC+ ++ Q + + + + L EA + + I + Sbjct: 141 LELDEASVFTIHGFCQHVITQLAFNSGFAMSLNLGN--DTSDLYLEAAEDFIRKISKSED 198 Query: 186 EELKKAFYEILEISNDEDIETLISDI 211 E + +L S + L+ + Sbjct: 199 E------FRLLAESGWHTPDRLLQEF 218 >gi|319426281|gb|ADV54355.1| exodeoxyribonuclease V, beta subunit [Shewanella putrefaciens 200] Length = 1256 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 12/158 (7%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANA--HP---STLLCLTHTKAAAAEMSHRVLEI 85 S + A+AG+GKT+ + LRLLL + P +L +T T AA E+ R+ Sbjct: 33 GGSRLIEASAGTGKTYTISGLYLRLLLGDGIDTPLTCEQILVVTFTNAATEELRDRIRRR 92 Query: 86 IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I A+ + + + S A L++ + TIH FC+ I+ Sbjct: 93 IQVAFKCFLGLPIEDPFVQALYDNTPVDERSIALRRFDLALKSLDEAAIFTIHGFCQRIL 152 Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASI 180 E+++ S F + D E + A + Sbjct: 153 SDLAFESSLLFESDFTLDDSE----FLHHAVRDFWREA 186 >gi|325499250|gb|EGC97109.1| ATP-dependent DNA helicase Rep [Escherichia fergusonii ECD227] Length = 673 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + ++ R + Sbjct: 146 LKTPAQAAAEAKGERDRI 163 >gi|218550997|ref|YP_002384788.1| ATP-dependent DNA helicase Rep [Escherichia fergusonii ATCC 35469] gi|218358538|emb|CAQ91186.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia fergusonii ATCC 35469] Length = 673 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + ++ R + Sbjct: 146 LKTPAQAAAEAKGERDRI 163 >gi|88606993|ref|YP_505476.1| UvrD/Rep family helicase [Anaplasma phagocytophilum HZ] gi|88598056|gb|ABD43526.1| helicase, UvrD/Rep family [Anaplasma phagocytophilum HZ] Length = 659 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 41/162 (25%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 +++ ++ + A AG+GKT + R+ ++ A P +L +T T A Sbjct: 25 MLNLNAEQKEAVLQVAGPVLILAGAGTGKTRTITARMGHIIKEGYAQPHEILAVTFTNKA 84 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV I+ T G+ + Sbjct: 85 AKEMLSRVNNIV----------------------------------------TASGIWLG 104 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA I++ ++S+F I + ++ + Sbjct: 105 TFHAIAARILRSHAELVGLSSNFTIISPDDQLQITKTIAADM 146 >gi|282866610|ref|ZP_06275652.1| UvrD/REP helicase [Streptomyces sp. ACTE] gi|282558512|gb|EFB64072.1| UvrD/REP helicase [Streptomyces sp. ACTE] Length = 1164 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 31/184 (16%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T A Sbjct: 24 GIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 83 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E++ RV + + A +++ + PG + Sbjct: 84 AGELAERVRKALVAAGVTDPDVIDPD-------------------------NPPGEPSIS 118 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HAF ++ + L + + + +L + L ++F Sbjct: 119 TYHAFAGRLLTEHGLRIGLEPTTRLLADATRYQLAARVLRE-----APGPYPALTRSFPT 173 Query: 195 ILEI 198 ++ Sbjct: 174 LVSD 177 >gi|153004883|ref|YP_001379208.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5] gi|152028456|gb|ABS26224.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5] Length = 745 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 41/206 (19%), Positives = 76/206 (36%), Gaps = 42/206 (20%) Query: 11 SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 + ++ +Q+ + V A AGSGKT L RV RLL A P ++L LT Sbjct: 27 ARALNYQGLLNDQQIAVVEAGDGPILVVAGAGSGKTRTLTWRVARLLAEGASPESILLLT 86 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV E+ + +I G Sbjct: 87 FTNKAAQEMLRRVG-----------EVCRLDTRQITG----------------------- 112 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 T H ++++ E ++I D E S ++ A ++ + Sbjct: 113 ----GTFHHVAHQLLREHGGELGYRKGYSILDREDSSDVMSAAIADCGLAVGARRFPK-A 167 Query: 190 KAFYEILEISNDEDIETLISDIISNR 215 +++ ++ + +T ++D++++R Sbjct: 168 DVLIDLVSMAVNT--QTPLADVLADR 191 >gi|116328254|ref|YP_797974.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330978|ref|YP_800696.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120998|gb|ABJ79041.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124667|gb|ABJ75938.1| ATP-dependent DNA helicase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 665 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 39/153 (25%) Query: 19 QTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 + + QL A V A AG+GKT +V R+ +L+ + S++L LT T+ AA E Sbjct: 6 ELNAAQLEAVLTQEGPVLVLAGAGTGKTKTIVSRLAQLVSSGVPTSSILLLTFTRKAARE 65 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R + I T++QG T H Sbjct: 66 MLLR-----------ASSIGDKRCTEVQG---------------------------GTFH 87 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 +FC ++++F ++S F I DE + + + Sbjct: 88 SFCSGVLRKFAPVLGLSSGFTILDESDTLDVFQ 120 >gi|294102168|ref|YP_003554026.1| UvrD/REP helicase [Aminobacterium colombiense DSM 12261] gi|293617148|gb|ADE57302.1| UvrD/REP helicase [Aminobacterium colombiense DSM 12261] Length = 660 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 44/168 (26%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 +D ++ + E + D V A AGSGKT +L ++ L+ A P +L +T T Sbjct: 7 ILDKLNPRQQEAVRYCD--GPLLVLAGAGSGKTRVLAHKIAYLIEKGYASPKGILAVTFT 64 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ A + + Sbjct: 65 NKAAREMGERVQALVGAKA--------------------------------------SAM 86 Query: 132 KVQTIHAFCEAIMQQFP---LEANITSHFAIADEEQSKKLIEEAKKST 176 +V T H+F + + + FAI D S+ L+++ + Sbjct: 87 QVSTFHSFGLHFLFRNSDQLEFLGLRKGFAIFDRNDSRSLVKKIMEDL 134 >gi|218960875|ref|YP_001740650.1| Superfamily I DNA and RNA helicases [Candidatus Cloacamonas acidaminovorans] gi|167729532|emb|CAO80444.1| Superfamily I DNA and RNA helicases [Candidatus Cloacamonas acidaminovorans] Length = 732 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 59/162 (36%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 SQ QL + +D V A AGSGKT L+ R L+ HP +L +T T Sbjct: 13 YASQLNERQLEVVTDTENPVLVLAGAGSGKTRSLIYRTAYLIKEKQVHPWNILIVTFTNK 72 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA E+ R+ +++ L V Sbjct: 73 AARELQERLEKLLNIPVR--------------------------------------SLWV 94 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T HA C I++ ++F+I DE+ K L+++ K Sbjct: 95 GTFHAICCRILRFESAHLPFNANFSIYDEDTQKSLLKKIYKE 136 >gi|146293207|ref|YP_001183631.1| exodeoxyribonuclease V subunit beta [Shewanella putrefaciens CN-32] gi|145564897|gb|ABP75832.1| exodeoxyribonuclease V, beta subunit [Shewanella putrefaciens CN-32] Length = 1251 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 12/158 (7%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANA--HP---STLLCLTHTKAAAAEMSHRVLEI 85 S + A+AG+GKT+ + LRLLL + P +L +T T AA E+ R+ Sbjct: 28 GGSRLIEASAGTGKTYTISGLYLRLLLGDGIDTPLTCEQILVVTFTNAATEELRDRIRRR 87 Query: 86 IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I A+ + + + S A L++ + TIH FC+ I+ Sbjct: 88 IQVAFKCFLGLPIEDPFVQALYDNTPVDERSIALRRFDLALKSLDEAAIFTIHGFCQRIL 147 Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASI 180 E+++ S F + D E + A + Sbjct: 148 SDLAFESSLLFESDFTLDDSE----FLHHAVRDFWREA 181 >gi|120598716|ref|YP_963290.1| exodeoxyribonuclease V subunit beta [Shewanella sp. W3-18-1] gi|120558809|gb|ABM24736.1| exodeoxyribonuclease V, beta subunit [Shewanella sp. W3-18-1] Length = 1256 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 12/158 (7%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANA--HP---STLLCLTHTKAAAAEMSHRVLEI 85 S + A+AG+GKT+ + LRLLL + P +L +T T AA E+ R+ Sbjct: 33 GGSRLIEASAGTGKTYTISGLYLRLLLGDGIDTPLTCEQILVVTFTNAATEELRDRIRRR 92 Query: 86 IT-AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I A+ + + + S A L++ + TIH FC+ I+ Sbjct: 93 IQVAFKCFLGLPIEDPFVQALYDNTPVDERSIALRRFDLALKSLDEAAIFTIHGFCQRIL 152 Query: 145 QQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASI 180 E+++ S F + D E + A + Sbjct: 153 SDLAFESSLLFESDFTLDDSE----FLHHAVRDFWREA 186 >gi|157368405|ref|YP_001476394.1| ATP-dependent DNA helicase Rep [Serratia proteamaculans 568] gi|157320169|gb|ABV39266.1| ATP-dependent DNA helicase Rep [Serratia proteamaculans 568] Length = 674 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 71/201 (35%), Gaps = 43/201 (21%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ + +T T AA EM Sbjct: 4 NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIHNCGYQARHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR GL + T H Sbjct: 64 KERVAQTMGR--------------------------KEAR-----------GLMISTFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + + S+F++ D++ L++E + L ++ + + I Sbjct: 87 LGLEIIKREYVALGMKSNFSLFDDQDQLALLKELTEKWLE----NDKTLVAQLISTISNW 142 Query: 199 SNDE-DIETLISDIISNRTAL 218 ND D + + S R L Sbjct: 143 KNDLVDPQKAMELARSERDKL 163 >gi|145219721|ref|YP_001130430.1| exodeoxyribonuclease V, beta subunit [Prosthecochloris vibrioformis DSM 265] gi|145205885|gb|ABP36928.1| exodeoxyribonuclease V, beta subunit [Chlorobium phaeovibrioides DSM 265] Length = 1167 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 84/213 (39%), Gaps = 17/213 (7%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITA-WSHL 92 V A+AG+GKT+ L + LRL++ P ++L +T+T+AA E+ ++ E I + L Sbjct: 16 LVEASAGTGKTYALTELYLRLIIEKELLPESILVVTYTEAATKELRQKIRERIRDTTAML 75 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 + + + G + + LL L V TIH FC +Q E+ Sbjct: 76 ASPLECTKRLASLGSLAMEKGAGEVSSLLENALYLLDTASVFTIHGFCLRALQDNAFESG 135 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDN--------NEELKKAFYEILEISNDEDI 204 IA ++L S + +E ++F L Sbjct: 136 SLYDTEIA--ADERELAGSIVDDFWRSRYFSSTAVLPGYAMKESPESFLRFLGEVRASSG 193 Query: 205 ETLI-----SDIISNRTALKLIFFFFSYLWRRK 232 E +I SDI++ + ++ + +WR + Sbjct: 194 ERIIPQFSSSDIVAIEDECQSLYSQIAEMWRDE 226 >gi|218692056|ref|YP_002400268.1| ATP-dependent DNA helicase Rep [Escherichia coli ED1a] gi|218429620|emb|CAR10442.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia coli ED1a] Length = 673 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + ++ R + Sbjct: 146 LKTPAQAAAEAKGERDRI 163 >gi|110644106|ref|YP_671836.1| ATP-dependent DNA helicase Rep [Escherichia coli 536] gi|191174367|ref|ZP_03035872.1| ATP-dependent DNA helicase Rep [Escherichia coli F11] gi|300979305|ref|ZP_07174489.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 200-1] gi|110345698|gb|ABG71935.1| ATP-dependent DNA helicase Rep [Escherichia coli 536] gi|190905344|gb|EDV64978.1| ATP-dependent DNA helicase Rep [Escherichia coli F11] gi|300308058|gb|EFJ62578.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 200-1] gi|324014722|gb|EGB83941.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 60-1] Length = 673 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + ++ R + Sbjct: 146 LKTPAQAAAEAKGERDRI 163 >gi|319788731|ref|YP_004090046.1| UvrD/REP helicase [Ruminococcus albus 7] gi|315450598|gb|ADU24160.1| UvrD/REP helicase [Ruminococcus albus 7] Length = 1231 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 25/176 (14%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKA 73 +S T+ +Q R VSA AGSGKT +L++R++RLL LL +T T Sbjct: 3 VSWTEDQQKAIDSYGRGVTVSAAAGSGKTAVLIERIIRLLTDKEKAIPADRLLAVTFTID 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAA+M + L+A K + P + + + L ++ Sbjct: 63 AAAQMRDK---------------LNAAFEKKLREDPENVWVLQQQDLAQLA-------RI 100 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 TI +FC ++++ + T + I E + + + A + + ++ +E K Sbjct: 101 STIDSFCFDMVKENLNKFEFTGNLKILSEAECDMIFDTAFEQAAEELCANDPDEYK 156 >gi|260857816|ref|YP_003231707.1| DNA helicase Rep and single-stranded DNA-dependent ATPase [Escherichia coli O26:H11 str. 11368] gi|257756465|dbj|BAI27967.1| DNA helicase Rep and single-stranded DNA-dependent ATPase [Escherichia coli O26:H11 str. 11368] gi|323155180|gb|EFZ41364.1| ATP-dependent DNA helicase Rep [Escherichia coli EPECa14] Length = 673 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + ++ R + Sbjct: 146 LKTPAQAAAEAKGERDRI 163 >gi|239813421|ref|YP_002942331.1| UvrD/REP helicase [Variovorax paradoxus S110] gi|239799998|gb|ACS17065.1| UvrD/REP helicase [Variovorax paradoxus S110] Length = 712 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 57/170 (33%), Gaps = 40/170 (23%) Query: 17 ISQTKSEQLLASDPT----------RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLL 66 +S EQ A + R V A AGSGKT L RV L+ LL Sbjct: 30 LSALNDEQRAAVEHGVGTLTAGRDERPLLVIAGAGSGKTSTLAHRVAHLIAGGVDLQRLL 89 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 LT ++ AA EM R +++ AR L + + Sbjct: 90 LLTFSRRAAQEMERRAGQVL------------------------------ARVLGLKSDK 119 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 P T H +++++ + HF I D ++ L+ + Sbjct: 120 PPALPWAGTFHGIGARLLREYAAHIGLNDHFTIHDRGDAEDLMGLVRHEL 169 >gi|82779041|ref|YP_405390.1| ATP-dependent DNA helicase Rep [Shigella dysenteriae Sd197] gi|309784490|ref|ZP_07679128.1| ATP-dependent DNA helicase Rep [Shigella dysenteriae 1617] gi|81243189|gb|ABB63899.1| rep helicase [Shigella dysenteriae Sd197] gi|308927596|gb|EFP73065.1| ATP-dependent DNA helicase Rep [Shigella dysenteriae 1617] Length = 673 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + ++ R + Sbjct: 146 LKTPAQAAAEAKGERDRI 163 >gi|323974362|gb|EGB69490.1| ATP-dependent DNA helicase Rep [Escherichia coli TW10509] Length = 673 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + ++ R + Sbjct: 146 LKTPAQAAAEAKGERDRI 163 >gi|300900679|ref|ZP_07118832.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 198-1] gi|300355828|gb|EFJ71698.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 198-1] Length = 673 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + ++ R + Sbjct: 146 LKTPAQAAAEAKGERDRI 163 >gi|91213298|ref|YP_543284.1| ATP-dependent DNA helicase Rep [Escherichia coli UTI89] gi|117626039|ref|YP_859362.1| ATP-dependent DNA helicase Rep [Escherichia coli APEC O1] gi|218560843|ref|YP_002393756.1| ATP-dependent DNA helicase Rep [Escherichia coli S88] gi|237702787|ref|ZP_04533268.1| rep helicase [Escherichia sp. 3_2_53FAA] gi|91074872|gb|ABE09753.1| rep helicase, a single-stranded DNA dependent ATPase [Escherichia coli UTI89] gi|115515163|gb|ABJ03238.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia coli APEC O1] gi|218367612|emb|CAR05396.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia coli S88] gi|226902958|gb|EEH89217.1| rep helicase [Escherichia sp. 3_2_53FAA] gi|294491804|gb|ADE90560.1| ATP-dependent DNA helicase Rep [Escherichia coli IHE3034] gi|307628841|gb|ADN73145.1| ATP-dependent DNA helicase Rep [Escherichia coli UM146] gi|315284673|gb|EFU44118.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 110-3] gi|323949337|gb|EGB45227.1| ATP-dependent DNA helicase Rep [Escherichia coli H252] gi|323954092|gb|EGB49889.1| ATP-dependent DNA helicase Rep [Escherichia coli H263] Length = 673 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + ++ R + Sbjct: 146 LKTPAQAAAEAKGERDRI 163 >gi|15892547|ref|NP_360261.1| DNA helicase II [Rickettsia conorii str. Malish 7] gi|81595570|sp|Q92HZ6|UVRD_RICCN RecName: Full=Probable DNA helicase II homolog gi|15619709|gb|AAL03162.1| DNA helicase II [Rickettsia conorii str. Malish 7] Length = 653 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 43/158 (27%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 +Q + A AG+GKT +L R+ ++ N A P +L +T T AA EM Sbjct: 11 NPEQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + RV +I + GL + T H+ Sbjct: 71 AERVNSLINCY----------------------------------------GLNIGTFHS 90 Query: 139 FCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKK 174 I++ L + + F I + KL+++ K Sbjct: 91 MAARILRDQIEHLNLGLNNRFTIISHDDQLKLVKDIVK 128 >gi|15804368|ref|NP_290408.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 EDL933] gi|12518638|gb|AAG58972.1|AE005609_4 rep helicase, a single-stranded DNA dependent ATPase [Escherichia coli O157:H7 str. EDL933] Length = 673 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VXQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + ++ R + Sbjct: 146 LKTPAQAAAEAKGERDRI 163 >gi|326443255|ref|ZP_08217989.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] Length = 1198 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 80/221 (36%), Gaps = 41/221 (18%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T A Sbjct: 16 GIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 75 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E++ RV + + + + PG ++ Sbjct: 76 AGELAERVRTALVRAGVTDPDAIDPD-------------------------RPPGEPRIS 110 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK-------------STLASIM 181 T HAF ++ L + + + +L + + STL + Sbjct: 111 TYHAFAGQLLTDHGLRIGLEPTARLLADATRYQLAAQVLRAAPGPYPALTRSFSTLVGDL 170 Query: 182 LDNNEELKKAFY--EILEISNDEDIETLISDIISNRTALKL 220 L + EL + E+L ++E +ETL S ++N +L Sbjct: 171 LALDAELSEHLVRPELLAAHDEELLETLASASLTNADLRRL 211 >gi|294814880|ref|ZP_06773523.1| Putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] gi|294327479|gb|EFG09122.1| Putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064] Length = 1200 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 80/221 (36%), Gaps = 41/221 (18%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T A Sbjct: 18 GIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 77 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E++ RV + + + + PG ++ Sbjct: 78 AGELAERVRTALVRAGVTDPDAIDPD-------------------------RPPGEPRIS 112 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK-------------STLASIM 181 T HAF ++ L + + + +L + + STL + Sbjct: 113 TYHAFAGQLLTDHGLRIGLEPTARLLADATRYQLAAQVLRAAPGPYPALTRSFSTLVGDL 172 Query: 182 LDNNEELKKAFY--EILEISNDEDIETLISDIISNRTALKL 220 L + EL + E+L ++E +ETL S ++N +L Sbjct: 173 LALDAELSEHLVRPELLAAHDEELLETLASASLTNADLRRL 213 >gi|157825751|ref|YP_001493471.1| DNA helicase II [Rickettsia akari str. Hartford] gi|157799709|gb|ABV74963.1| DNA helicase II [Rickettsia akari str. Hartford] Length = 653 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 43/158 (27%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 +Q + A AG+GKT +L R+ ++ N A P +L +T T AA EM Sbjct: 11 NPQQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHKNLAPPQNILAVTFTNKAAKEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + RV +I + GL + T H+ Sbjct: 71 AERVNSLINCY----------------------------------------GLNIGTFHS 90 Query: 139 FCEAIMQ--QFPLEANITSHFAIADEEQSKKLIEEAKK 174 I++ L + + F I + KL+++ K Sbjct: 91 MAARILRDQSEHLNLGLNNRFTIISHDDQLKLVKDIVK 128 >gi|302669040|ref|YP_003832865.1| ATP-dependent DNA helicase UvrD/REP family protein [Butyrivibrio proteoclasticus B316] gi|302397380|gb|ADL36283.1| ATP-dependent DNA helicase UvrD/REP family [Butyrivibrio proteoclasticus B316] Length = 643 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 80/216 (37%), Gaps = 52/216 (24%) Query: 17 ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +++ +Q A+ + A AGSGKT + R+ ++ A +L +T T AA Sbjct: 5 LNELNEDQKKAATCIEGPVIILAGAGSGKTRTITYRIAYMIDAGIDTRNILAITFTNKAA 64 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R A + L D++L + T Sbjct: 65 KEMKER------ALALLDDKVLPPTL--------------------------------TT 86 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H+F IM++ + + + D E S K I++ K+ +EL F ++ Sbjct: 87 FHSFGLTIMRKSGILLGYRKNIQVCDAEDSVKRIKKIVKN------KGFEKELVSQFADM 140 Query: 196 LEISNDE-----DIETLISDIISNRTALKLIFFFFS 226 + + D+ DIE + + S K +++ + Sbjct: 141 ISRAKDKLLEPSDIE--VYEQGSVYDQFKQVYYAYQ 174 >gi|261252168|ref|ZP_05944741.1| exodeoxyribonuclease V beta chain [Vibrio orientalis CIP 102891] gi|260935559|gb|EEX91548.1| exodeoxyribonuclease V beta chain [Vibrio orientalis CIP 102891] Length = 1205 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 11/128 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHP----------STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + P +L +T T+AA AE+ R+ Sbjct: 22 LIEASAGTGKTFTIAGLYLRLLLGHGSPETKHQVPLTVDQILVVTFTEAATAELRDRIRA 81 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I + L+ + I+ SD +A +L+ V TIH FC+ ++ Sbjct: 82 RIHD-ARLAFARGKSSDPVIEPLLDEVSDHKQAAEILLQAERQMDEAAVYTIHGFCQRML 140 Query: 145 QQFPLEAN 152 Q E+ Sbjct: 141 TQNAFESG 148 >gi|215489106|ref|YP_002331537.1| ATP-dependent DNA helicase Rep [Escherichia coli O127:H6 str. E2348/69] gi|312969493|ref|ZP_07783695.1| ATP-dependent DNA helicase Rep [Escherichia coli 2362-75] gi|215267178|emb|CAS11626.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia coli O127:H6 str. E2348/69] gi|312286040|gb|EFR13958.1| ATP-dependent DNA helicase Rep [Escherichia coli 2362-75] Length = 673 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + ++ R + Sbjct: 146 LKTPAQAAAEAKGERDRI 163 >gi|15833965|ref|NP_312738.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. Sakai] gi|168751735|ref|ZP_02776757.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC4113] gi|168753671|ref|ZP_02778678.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC4401] gi|168764145|ref|ZP_02789152.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC4501] gi|168768055|ref|ZP_02793062.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC4486] gi|168775675|ref|ZP_02800682.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC4196] gi|168780673|ref|ZP_02805680.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC4076] gi|168786612|ref|ZP_02811619.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC869] gi|168800994|ref|ZP_02826001.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC508] gi|193066130|ref|ZP_03047185.1| ATP-dependent DNA helicase Rep [Escherichia coli E22] gi|193071046|ref|ZP_03051973.1| ATP-dependent DNA helicase Rep [Escherichia coli E110019] gi|194429767|ref|ZP_03062282.1| ATP-dependent DNA helicase Rep [Escherichia coli B171] gi|195938066|ref|ZP_03083448.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC4024] gi|208808178|ref|ZP_03250515.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC4206] gi|208813347|ref|ZP_03254676.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC4045] gi|208819670|ref|ZP_03259990.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC4042] gi|209398850|ref|YP_002273296.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC4115] gi|209921251|ref|YP_002295335.1| ATP-dependent DNA helicase Rep [Escherichia coli SE11] gi|217324229|ref|ZP_03440313.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. TW14588] gi|254795776|ref|YP_003080613.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. TW14359] gi|260870503|ref|YP_003236905.1| DNA helicase Rep and single-stranded DNA-dependent ATPase [Escherichia coli O111:H- str. 11128] gi|261255598|ref|ZP_05948131.1| DNA helicase Rep and single-stranded DNA-dependent ATPase [Escherichia coli O157:H7 str. FRIK966] gi|291285193|ref|YP_003502011.1| ATP-dependent DNA helicase Rep [Escherichia coli O55:H7 str. CB9615] gi|293417244|ref|ZP_06659869.1| ATP-dependent DNA helicase Rep [Escherichia coli B185] gi|300818753|ref|ZP_07098960.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 107-1] gi|300823309|ref|ZP_07103440.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 119-7] gi|331660120|ref|ZP_08361056.1| ATP-dependent DNA helicase Rep [Escherichia coli TA206] gi|331670623|ref|ZP_08371460.1| ATP-dependent DNA helicase Rep [Escherichia coli TA271] gi|331685497|ref|ZP_08386081.1| ATP-dependent DNA helicase Rep [Escherichia coli H299] gi|13364186|dbj|BAB38134.1| rep helicase, a single-stranded DNA dependent ATPase [Escherichia coli O157:H7 str. Sakai] gi|187768815|gb|EDU32659.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC4196] gi|188014262|gb|EDU52384.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC4113] gi|189001612|gb|EDU70598.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC4076] gi|189359080|gb|EDU77499.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC4401] gi|189362630|gb|EDU81049.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC4486] gi|189365803|gb|EDU84219.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC4501] gi|189373350|gb|EDU91766.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC869] gi|189376792|gb|EDU95208.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC508] gi|192926227|gb|EDV80866.1| ATP-dependent DNA helicase Rep [Escherichia coli E22] gi|192955633|gb|EDV86109.1| ATP-dependent DNA helicase Rep [Escherichia coli E110019] gi|194412179|gb|EDX28486.1| ATP-dependent DNA helicase Rep [Escherichia coli B171] gi|208727979|gb|EDZ77580.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC4206] gi|208734624|gb|EDZ83311.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC4045] gi|208739793|gb|EDZ87475.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC4042] gi|209160250|gb|ACI37683.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC4115] gi|209753538|gb|ACI75076.1| guanosine pentaphosphatase [Escherichia coli] gi|209753540|gb|ACI75077.1| guanosine pentaphosphatase [Escherichia coli] gi|209753542|gb|ACI75078.1| guanosine pentaphosphatase [Escherichia coli] gi|209753544|gb|ACI75079.1| guanosine pentaphosphatase [Escherichia coli] gi|209753546|gb|ACI75080.1| guanosine pentaphosphatase [Escherichia coli] gi|209914510|dbj|BAG79584.1| DNA helicase Rep [Escherichia coli SE11] gi|217320450|gb|EEC28874.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. TW14588] gi|222035480|emb|CAP78225.1| ATP-dependent DNA helicase rep [Escherichia coli LF82] gi|254595176|gb|ACT74537.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia coli O157:H7 str. TW14359] gi|257766859|dbj|BAI38354.1| DNA helicase Rep and single-stranded DNA-dependent ATPase [Escherichia coli O111:H- str. 11128] gi|290765066|gb|ADD59027.1| ATP-dependent DNA helicase Rep [Escherichia coli O55:H7 str. CB9615] gi|291431012|gb|EFF04007.1| ATP-dependent DNA helicase Rep [Escherichia coli B185] gi|300524095|gb|EFK45164.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 119-7] gi|300528719|gb|EFK49781.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 107-1] gi|312948333|gb|ADR29160.1| ATP-dependent DNA helicase Rep [Escherichia coli O83:H1 str. NRG 857C] gi|315300851|gb|EFU60073.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 16-3] gi|320191128|gb|EFW65778.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. EC1212] gi|320198514|gb|EFW73115.1| ATP-dependent DNA helicase Rep [Escherichia coli EC4100B] gi|320639262|gb|EFX08884.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. G5101] gi|320644647|gb|EFX13697.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H- str. 493-89] gi|320649972|gb|EFX18475.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H- str. H 2687] gi|320655318|gb|EFX23260.1| ATP-dependent DNA helicase Rep [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660943|gb|EFX28386.1| ATP-dependent DNA helicase Rep [Escherichia coli O55:H7 str. USDA 5905] gi|320666067|gb|EFX33081.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. LSU-61] gi|323161158|gb|EFZ47076.1| ATP-dependent DNA helicase Rep [Escherichia coli E128010] gi|323173395|gb|EFZ59024.1| ATP-dependent DNA helicase Rep [Escherichia coli LT-68] gi|323189500|gb|EFZ74780.1| ATP-dependent DNA helicase Rep [Escherichia coli RN587/1] gi|324016173|gb|EGB85392.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 117-3] gi|326344236|gb|EGD67996.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. 1125] gi|326347937|gb|EGD71651.1| ATP-dependent DNA helicase Rep [Escherichia coli O157:H7 str. 1044] gi|331052688|gb|EGI24723.1| ATP-dependent DNA helicase Rep [Escherichia coli TA206] gi|331062096|gb|EGI34018.1| ATP-dependent DNA helicase Rep [Escherichia coli TA271] gi|331077198|gb|EGI48412.1| ATP-dependent DNA helicase Rep [Escherichia coli H299] Length = 673 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + ++ R + Sbjct: 146 LKTPAQAAAEAKGERDRI 163 >gi|269137454|ref|YP_003294154.1| ATP-dependent DNA helicase Rep [Edwardsiella tarda EIB202] gi|267983114|gb|ACY82943.1| ATP-dependent DNA helicase Rep [Edwardsiella tarda EIB202] gi|304557528|gb|ADM40192.1| ATP-dependent DNA helicase Rep [Edwardsiella tarda FL6-60] Length = 726 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + + +T T AA EM R Sbjct: 58 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRVCGYQARHIAAVTFTNKAAREMKER 117 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 118 VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 140 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D++ L+ + + L + +L++ I ND Sbjct: 141 EIIKREYKALGMKSNFSLFDDQDQLALLTDLTERWLEK----DKTQLQQLIATISNWKND 196 >gi|260846446|ref|YP_003224224.1| DNA helicase Rep and single-stranded DNA-dependent ATPase [Escherichia coli O103:H2 str. 12009] gi|257761593|dbj|BAI33090.1| DNA helicase Rep and single-stranded DNA-dependent ATPase [Escherichia coli O103:H2 str. 12009] Length = 673 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + ++ R + Sbjct: 146 LKTPAQAAAEAKGERDRI 163 >gi|237727902|ref|ZP_04558383.1| ATP-dependent DNA helicase Rep [Citrobacter sp. 30_2] gi|226910351|gb|EEH96269.1| ATP-dependent DNA helicase Rep [Citrobacter sp. 30_2] Length = 673 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKLILQQLISTISNWKND 145 >gi|225351772|ref|ZP_03742795.1| hypothetical protein BIFPSEUDO_03369 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158116|gb|EEG71399.1| hypothetical protein BIFPSEUDO_03369 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 1377 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 64/166 (38%), Gaps = 27/166 (16%) Query: 18 SQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + + P+ V A AGSGKT+ + +R++ L+ P +L LT T+ AA+ Sbjct: 8 TDSPEQAAVVQAPSYADVVVVAGAGSGKTYTMTRRIITLIEQGVSPEKILGLTFTRKAAS 67 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV +T + L + T +V T Sbjct: 68 ELLSRVSAAVTR--------------------------DQRERGLKSANMTFLKPEVSTY 101 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 AF ++I++Q+ L + E + +LI + +M Sbjct: 102 DAFFQSIVRQYGLLVGFDQNTQPLSEAGAMQLIHTVLDRHMDDLMA 147 >gi|317046371|ref|YP_004114019.1| ATP-dependent DNA helicase Rep [Pantoea sp. At-9b] gi|316947988|gb|ADU67463.1| ATP-dependent DNA helicase Rep [Pantoea sp. At-9b] Length = 673 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T A+ EM R Sbjct: 7 QQRAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRDCGYQARHIAAVTFTNKASREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S F++ D++ L+++ K L ++ +L++ I ND Sbjct: 90 EIIKREYAALGMKSTFSLFDDQDQLALLKDLTKQWLE----EDKTQLQQLISTISNWKND 145 Query: 202 E-DIETLISDIISNRTAL 218 D + + S R + Sbjct: 146 LVDPQAAVGGAKSQRDQI 163 >gi|94265519|ref|ZP_01289267.1| UvrD/REP helicase [delta proteobacterium MLMS-1] gi|93453960|gb|EAT04306.1| UvrD/REP helicase [delta proteobacterium MLMS-1] Length = 775 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 38/157 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 +++ P V A AGSGKT LV R+ L+ P LL LT T+ AA EM+ Sbjct: 35 NSAQREAVCAPPGPILVIAGAGSGKTRTLVHRLAWLVEQGTPPEQLLLLTFTRKAAQEMT 94 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R + +L ++ G T HA Sbjct: 95 AR-----------AGWLLDGSCRRVTG---------------------------GTFHAT 116 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 +++++ ++F+I D+ ++ +I K S Sbjct: 117 ANLLLRRYATRIGYQANFSIIDQSDAEGIINLLKSSL 153 >gi|26250516|ref|NP_756556.1| ATP-dependent DNA helicase Rep [Escherichia coli CFT073] gi|218707414|ref|YP_002414933.1| ATP-dependent DNA helicase Rep [Escherichia coli UMN026] gi|227888639|ref|ZP_04006444.1| ATP-dependent DNA helicase Rep [Escherichia coli 83972] gi|293407408|ref|ZP_06651328.1| ATP-dependent DNA helicase Rep [Escherichia coli FVEC1412] gi|298383148|ref|ZP_06992742.1| ATP-dependent DNA helicase Rep [Escherichia coli FVEC1302] gi|300985811|ref|ZP_07177603.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 45-1] gi|301047343|ref|ZP_07194428.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 185-1] gi|26110946|gb|AAN83130.1|AE016769_245 ATP-dependent DNA helicase rep [Escherichia coli CFT073] gi|218434511|emb|CAR15438.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia coli UMN026] gi|227834478|gb|EEJ44944.1| ATP-dependent DNA helicase Rep [Escherichia coli 83972] gi|291425519|gb|EFE98557.1| ATP-dependent DNA helicase Rep [Escherichia coli FVEC1412] gi|298276384|gb|EFI17903.1| ATP-dependent DNA helicase Rep [Escherichia coli FVEC1302] gi|300300760|gb|EFJ57145.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 185-1] gi|300407962|gb|EFJ91500.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 45-1] gi|307555906|gb|ADN48681.1| rep helicase a single-stranded DNA dependent ATPase [Escherichia coli ABU 83972] gi|315293139|gb|EFU52491.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 153-1] gi|320197590|gb|EFW72202.1| ATP-dependent DNA helicase Rep [Escherichia coli WV_060327] Length = 673 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + ++ R + Sbjct: 146 LKTPAQAAAEAKGERDRI 163 >gi|58616965|ref|YP_196164.1| DNA helicase II [Ehrlichia ruminantium str. Gardel] gi|58416577|emb|CAI27690.1| DNA helicase II [Ehrlichia ruminantium str. Gardel] Length = 639 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 58/174 (33%), Gaps = 42/174 (24%) Query: 15 DLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D I+ +Q A ++ + A AG+GKT + R+ +L N A P+ +L +T T Sbjct: 3 DYITSLNEDQKKAVTNINGPILILAGAGTGKTRTITSRIAYILNNNFALPNQILAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ E L + Sbjct: 63 KAANEMLSRINE----------------------------------------LTCASNIW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + T HA I++Q + S F I + ++I+ D + Sbjct: 83 LGTFHAIATKILRQHAEAVGLKSDFTIIGTDDQLQVIKTIVNDMHPEYASDAYK 136 >gi|72163277|ref|YP_290934.1| DNA and RNA helicase [Thermobifida fusca YX] gi|71917009|gb|AAZ56911.1| DNA and RNA helicase [Thermobifida fusca YX] Length = 1050 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 79/230 (34%), Gaps = 51/230 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 + +D + ++ A + A G+GKT L R+ ++ S L +T Sbjct: 481 ASLLDGLD--PDQRAAAEHTGGPLLIVAGPGTGKTRTLTHRIAYVVAERGVPASQCLAIT 538 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T+ AA E+ R+ ++ E Sbjct: 539 FTRRAADELRERLHALLG--------------------------------------ERAA 560 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK------KSTLAS---I 180 + + T+H I+++ A ++ F IAD+ +++ E + LA Sbjct: 561 DMTITTLHGLGALILREQYARAGLSPDFTIADDSLRQEIAAEIAGSAGEGRRLLARRETA 620 Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWR 230 + +++ E+ + F L +N D LI + +A + + + W Sbjct: 621 LHEDDAEIAR-FDARLREANLVDFTDLIRLPVRLLSADEELVAHYRSRWP 669 >gi|212639014|ref|YP_002315534.1| Superfamily I helicase domain and RecB family exonuclease domain [Anoxybacillus flavithermus WK1] gi|212560494|gb|ACJ33549.1| Superfamily I helicase domain and RecB family exonuclease domain [Anoxybacillus flavithermus WK1] Length = 965 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 34/161 (21%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 + K ++ + + A GSGKT LV+R+ ++ N +P +L T T+ AA Sbjct: 3 VELNKQQKQVVHTTEGPLLIIAGPGSGKTFTLVERIKYIITTKNVNPENILVATFTEKAA 62 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 +E+ R+ + I + + T Sbjct: 63 SELLTRISNRLNE---------------------------------ENISINLNEMYIGT 89 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 IH+ C I+++ + ++ + D+ + LI + K Sbjct: 90 IHSICLRILEENREYTRLKKNYRVLDQFDQQYLIYQNIKKF 130 >gi|209521793|ref|ZP_03270474.1| UvrD/REP helicase [Burkholderia sp. H160] gi|209497763|gb|EDZ97937.1| UvrD/REP helicase [Burkholderia sp. H160] Length = 471 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 63/173 (36%), Gaps = 32/173 (18%) Query: 12 ETIDLISQTKSEQLLASDPT--------RSAWVSANAGSGKTHILVQRVLRLLLANAHPS 63 +T +++ Q A + + V A AGSGKT+ L RV L++ A P Sbjct: 26 DTAAWLAKLNDAQREAVEYGTGTPDALPGALLVIAGAGSGKTNTLAHRVANLVVKGADPQ 85 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L LT ++ AA EM+ RV T+I G + L Sbjct: 86 RILLLTFSRRAALEMTRRV-------------------TRITGAAAATAGTPSVGTALAQ 126 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 L T H+ +++++ + F I D E S L+ + Sbjct: 127 GLT-----WAGTFHSVGARLLREYADLIGLVPAFTINDREDSADLMNLVRHEL 174 >gi|94264521|ref|ZP_01288308.1| UvrD/REP helicase [delta proteobacterium MLMS-1] gi|93455080|gb|EAT05307.1| UvrD/REP helicase [delta proteobacterium MLMS-1] Length = 771 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 38/157 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 +++ P V A AGSGKT LV R+ L+ P LL LT T+ AA EM+ Sbjct: 35 NSAQREAVCAPPGPILVIAGAGSGKTRTLVHRLAWLVEQGTPPEQLLLLTFTRKAAQEMT 94 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R + +L ++ G T HA Sbjct: 95 AR-----------AGWLLDGSCRRVTG---------------------------GTFHAT 116 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 +++++ ++F+I D+ ++ +I K S Sbjct: 117 ANLLLRRYATRIGYQANFSIIDQSDAEGIINLLKSSL 153 >gi|288937796|ref|YP_003441855.1| ATP-dependent DNA helicase Rep [Klebsiella variicola At-22] gi|288892505|gb|ADC60823.1| ATP-dependent DNA helicase Rep [Klebsiella variicola At-22] Length = 673 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVVLQQLISTISNWKND 145 >gi|120600524|ref|YP_965098.1| ATP-dependent DNA helicase Rep [Shewanella sp. W3-18-1] gi|120560617|gb|ABM26544.1| ATP-dependent DNA helicase Rep [Shewanella sp. W3-18-1] Length = 670 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + ++ + V A AGSGKT +++ ++ L+ + +T T AA Sbjct: 1 MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVEKCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + + +AR GL + T Sbjct: 61 REMKERIAQSMGR--------------------------KEAR-----------GLWIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + F++ D++ + L++E + L D +++L K+ Sbjct: 84 FHTLGLEIIKREHKVLGLKPGFSLFDDQDTLALLKELTQDEL-----DEDKDLLKSLAST 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|171742279|ref|ZP_02918086.1| hypothetical protein BIFDEN_01385 [Bifidobacterium dentium ATCC 27678] gi|283456614|ref|YP_003361178.1| ATP-dependent DNA helicase [Bifidobacterium dentium Bd1] gi|171277893|gb|EDT45554.1| hypothetical protein BIFDEN_01385 [Bifidobacterium dentium ATCC 27678] gi|283103248|gb|ADB10354.1| ATP-dependent DNA helicase, UvrD/REP family [Bifidobacterium dentium Bd1] Length = 1346 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 61/166 (36%), Gaps = 28/166 (16%) Query: 18 SQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + + P+ V A AGSGKT+ + +R++ L+ P +L LT T+ AA+ Sbjct: 8 TDSPEQAAVVQAPSYADVVVVAGAGSGKTYTMTRRIINLIEQGVSPERILGLTFTRKAAS 67 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV + + A K + + T Sbjct: 68 ELLSRVSAAVVSNQGGRTGSAGAAFLKPE---------------------------ISTY 100 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 AF + I++Q+ L + E + +LI + IM Sbjct: 101 DAFFQTIVRQYGLLVGFDQNTQPLSEAGAMQLIYAVLDKHMDEIMR 146 >gi|91790119|ref|YP_551071.1| UvrD/REP helicase [Polaromonas sp. JS666] gi|91699344|gb|ABE46173.1| UvrD/REP helicase [Polaromonas sp. JS666] Length = 716 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 38/151 (25%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 ++Q + V A AGSGKT ++ ++ RL+ + + +T T AAAEM R Sbjct: 28 AQQEAVNYLHGPCLVLAGAGSGKTRVITHKIGRLIQSGLKAEQIAAITFTNKAAAEMRER 87 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 +I + G+ + T HA Sbjct: 88 AKSLIGKQAK--------------------------------------GVLICTFHALGV 109 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 +++Q + F+I D + ++++A Sbjct: 110 RMLRQDGQALGLKQQFSILDSDDVTSILKDA 140 >gi|290513192|ref|ZP_06552554.1| ATP-dependent DNA helicase Rep [Klebsiella sp. 1_1_55] gi|289774403|gb|EFD82409.1| ATP-dependent DNA helicase Rep [Klebsiella sp. 1_1_55] Length = 673 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVVLQQLISTISNWKND 145 >gi|206577442|ref|YP_002241158.1| ATP-dependent DNA helicase Rep [Klebsiella pneumoniae 342] gi|206566500|gb|ACI08276.1| ATP-dependent DNA helicase Rep [Klebsiella pneumoniae 342] Length = 673 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVVLQQLISTISNWKND 145 >gi|157828499|ref|YP_001494741.1| DNA helicase II [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933219|ref|YP_001650008.1| DNA helicase II [Rickettsia rickettsii str. Iowa] gi|157800980|gb|ABV76233.1| DNA helicase II [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908306|gb|ABY72602.1| DNA helicase II [Rickettsia rickettsii str. Iowa] Length = 653 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 43/158 (27%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 +Q + A AG+GKT +L R+ ++ N A P +L +T T AA EM Sbjct: 11 NPEQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + RV +I + GL + T H+ Sbjct: 71 AERVNSLINCY----------------------------------------GLNIGTFHS 90 Query: 139 FCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKK 174 I++ L + + F I + KL+++ K Sbjct: 91 MAARILRDQIEHLNLGLNNRFTIISHDDQLKLVKDIVK 128 >gi|157964534|ref|YP_001499358.1| DNA helicase II [Rickettsia massiliae MTU5] gi|157844310|gb|ABV84811.1| DNA helicase II [Rickettsia massiliae MTU5] Length = 653 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 43/158 (27%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 +Q + A AG+GKT +L R+ ++ N A P +L +T T AA EM Sbjct: 11 NPEQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + RV +I + GL + T H+ Sbjct: 71 AERVNSLINCY----------------------------------------GLNIGTFHS 90 Query: 139 FCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKK 174 I++ L + + F I + KL+++ K Sbjct: 91 MAARILRDQIEHLNLGLNNRFTIISHDDQLKLVKDIVK 128 >gi|310780023|ref|YP_003968355.1| UvrD/REP helicase [Ilyobacter polytropus DSM 2926] gi|309749346|gb|ADO84007.1| UvrD/REP helicase [Ilyobacter polytropus DSM 2926] Length = 1041 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 80/190 (42%), Gaps = 11/190 (5%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT+ L + LL + ++ LT T+ A E+ R+L + + + Sbjct: 6 ILKASAGTGKTYRLSLEYIASLLLGENFQEIMVLTFTRKATGEIRERILSFLKEITTDGE 65 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-FPLEANI 153 + + D K + I++ LK+ TI +F I ++ I Sbjct: 66 DAQEIVENIKKLYPDLVVDTEKLVDVYSEIMKNKDRLKIHTIDSFTNIIFKKSIAPSLGI 125 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE---TLISD 210 + I D++++K + + L + ++F + L + ++DIE LI + Sbjct: 126 -YSYEIIDDDRNKDFHLKILEKLLEK------KTYFESFKDFLYENAEKDIEAYLKLIKN 178 Query: 211 IISNRTALKL 220 I++ R L Sbjct: 179 ILNERWKFLL 188 >gi|326791343|ref|YP_004309164.1| DNA polymerase III subunit epsilon [Clostridium lentocellum DSM 5427] gi|326542107|gb|ADZ83966.1| DNA polymerase III, epsilon subunit [Clostridium lentocellum DSM 5427] Length = 837 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 77/224 (34%), Gaps = 44/224 (19%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 D + ++ + ++ V A AG+GKT ++ R L+ P +LCLT T A Sbjct: 5 DYRALNNEQKQVVDTLDQNLLVLAPAGTGKTKVIALRTAYLVQHQQEPEKILCLTFTNKA 64 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ I E + ++ Sbjct: 65 AKEMKERIQLYIP--------------------------------------EQIKKMTIK 86 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+FC ++ ++ + + DE S +IE+ ++ + +++ F Sbjct: 87 TFHSFCYHLINHEKENSHFSFPCTLIDEADSLAIIEKIIQTNKLNDDSVYYQQIISFFEN 146 Query: 195 ILEISNDEDIET------LISDIISNRTALKLIFFFFSYLWRRK 232 I S +E ++ D ++ L + + R+ Sbjct: 147 IKRHSLTFPLEERYHYKMIVEDYFKSQDQLGQLGRRREDSFLRR 190 >gi|255726244|ref|XP_002548048.1| predicted protein [Candida tropicalis MYA-3404] gi|240133972|gb|EER33527.1| predicted protein [Candida tropicalis MYA-3404] Length = 935 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 89/229 (38%), Gaps = 43/229 (18%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 ++ +++ + E + S + A G+GKT +LV RV LL + P ++ T Sbjct: 11 RILESLNENQREAVT-SPCNGRLQIIAGPGTGKTKVLVSRVAHLLIVDKVRPDNMIVTTF 69 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 TK AA EM+ R+ ++ + D+++ Sbjct: 70 TKKAANEMTDRLHRLLAGTNISVDKLI--------------------------------- 96 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK----STLASIMLDNNE 186 + T H+ C I++++ + H IADE + ++++ S L + ++ Sbjct: 97 --IGTFHSVCYRIIKRYGKFLGLEKH-TIADETDKRSIMKKIISGLQPSELTMLQRMSSA 153 Query: 187 ELKKAFY-EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKII 234 + ++L D D++++ I S ++ + + R K + Sbjct: 154 TTSQFTSGKVLNSYKDFDLDSISKQISSLKSKAISLEAYAKSPKRNKAL 202 >gi|262166384|ref|ZP_06034121.1| exodeoxyribonuclease V beta chain [Vibrio mimicus VM223] gi|262026100|gb|EEY44768.1| exodeoxyribonuclease V beta chain [Vibrio mimicus VM223] Length = 1208 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + L+ ++E ++ +D S A LL+ + TIH FC+ ++ Sbjct: 84 RLHD-ARLAFARGASEDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F +L + Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178 >gi|229586731|ref|YP_002845232.1| DNA helicase II [Rickettsia africae ESF-5] gi|228021781|gb|ACP53489.1| DNA helicase II [Rickettsia africae ESF-5] Length = 653 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 43/158 (27%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 +Q + A AG+GKT +L R+ ++ N A P +L +T T AA EM Sbjct: 11 NPEQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + RV +I + GL + T H+ Sbjct: 71 AERVNSLINCY----------------------------------------GLNIGTFHS 90 Query: 139 FCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKK 174 I++ L + + F I + KL+++ K Sbjct: 91 MAARILRDQIEHLNLGLNNRFTIISHDDQLKLVKDIVK 128 >gi|294792636|ref|ZP_06757783.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp. 6_1_27] gi|294456535|gb|EFG24898.1| helicase, UvrD/REP/exonuclease family protein [Veillonella sp. 6_1_27] Length = 862 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 46/212 (21%), Positives = 82/212 (38%), Gaps = 44/212 (20%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 + +Q + + ++ + A+AG+GKT+ L RV L+ + A +LC+T T AA EM Sbjct: 4 NREQQRVIDEVEQNILLLASAGTGKTNTLAYRVAHLIEGDYAKAENILCMTFTNKAANEM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ ++ + + + V T H+ Sbjct: 64 KGRIQSLVGSPAKAVE--------------------------------------VSTFHS 85 Query: 139 FCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 FC I+QQ + + I DEE K+L E + L + N + K + + Sbjct: 86 FCFFILQQEGKRNETLYTDVTIFDEEDCKELFEPYRPGKLREMSFANVIAMVKEYRSLYG 145 Query: 198 ISNDE---DIETLISDI-ISNRTALKLIFFFF 225 +D+ D + I + R A++ F F Sbjct: 146 FYSDDLLGDYKRTIERLQKEQREAIEQQFSSF 177 >gi|262375119|ref|ZP_06068353.1| exodeoxyribonuclease V, beta subunit [Acinetobacter lwoffii SH145] gi|262310132|gb|EEY91261.1| exodeoxyribonuclease V, beta subunit [Acinetobacter lwoffii SH145] Length = 1367 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 79/190 (41%), Gaps = 21/190 (11%) Query: 23 EQLLASDPTRSA------WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 ++ ++++P + W+ A+AG+GKT+ L ++R+ L +P ++ T T+ A A Sbjct: 2 QKAISTNPIQDMKFRGLHWIEASAGTGKTYTLSSLMVRIFLDQYYPHQVIATTFTRKATA 61 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSD-------------MSKARHLLIT 123 E+ +RV + +I K N++D + AR L Sbjct: 62 ELKNRVRLRVEETLAYIQRHQQLNSVEITAKIQNETDPLFQQVLKDYGSRLDYARRRLRL 121 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 +L L V T+ +F + ++++F E+ + +++ I++ L + Sbjct: 122 VLNQLDELFVGTLDSFSQKLLREFAFESGKIERAELTEDQD--LYIQQLIHDVLRDWIQQ 179 Query: 184 NNEELKKAFY 193 + + Y Sbjct: 180 QPQYMVNHLY 189 >gi|260222507|emb|CBA32139.1| ATP-dependent DNA helicase rep [Curvibacter putative symbiont of Hydra magnipapillata] Length = 709 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 38/153 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 ++Q + V A AGSGKT ++ ++ RL+ + + +T T AAAEM Sbjct: 11 NPAQQEAVNYLHGPCLVLAGAGSGKTRVITHKIARLIQMGMPANRIAAITFTNKAAAEMR 70 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R A+HL+ + + V T HA Sbjct: 71 ER-----------------------------------AKHLIGKAAKD---VVVCTFHAL 92 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 ++++ + F+I D + +I++A Sbjct: 93 GVRMLREDGAVLGLKPQFSILDSDDVTSIIKDA 125 >gi|297580957|ref|ZP_06942882.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae RC385] gi|297534783|gb|EFH73619.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae RC385] Length = 1208 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + L+ ++E ++ +D S A LL+ + TIH FC+ ++ Sbjct: 84 RLHD-ARLAFARGASEDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F +L + Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178 >gi|292486654|ref|YP_003529524.1| ATP-dependent DNA helicase RepA [Erwinia amylovora CFBP1430] gi|292897891|ref|YP_003537260.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946] gi|291197739|emb|CBJ44834.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946] gi|291552071|emb|CBA19108.1| ATP-dependent DNA helicase RepA [Erwinia amylovora CFBP1430] gi|312170720|emb|CBX78982.1| ATP-dependent DNA helicase RepA [Erwinia amylovora ATCC BAA-2158] Length = 672 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ P + +T T A+ EM R Sbjct: 7 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQPRHIAAVTFTNKASREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D++ L+++ + L ++ L++ I ND Sbjct: 90 EIIKREYAALGMKSNFSLFDDQDQLALLKDLTEQWLE----NDKNLLQQLVSTISNWKND 145 Query: 202 E-DIETLISDIISNRTAL 218 D + +S R L Sbjct: 146 LMDPSRAAAGALSERDRL 163 >gi|258627298|ref|ZP_05722082.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM603] gi|258580336|gb|EEW05301.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM603] Length = 1208 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + L+ ++E ++ +D S A LL+ + TIH FC+ ++ Sbjct: 84 RLHD-ARLAFARGASEDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F +L + Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178 >gi|227357186|ref|ZP_03841555.1| ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906] gi|227162718|gb|EEI47685.1| ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906] Length = 679 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 38/158 (24%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q + V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 13 QQKAVEYVSGPCLVLAGAGSGKTRVITNKIAYLIRQCRYSAKQIAAVTFTNKAAREMKER 72 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + + GL + T H Sbjct: 73 VAQTLGK-------------------------------------QEAKGLMISTFHTLGL 95 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 I+++ I S+F++ D++ L++E L Sbjct: 96 EIIKREYKALGIKSNFSLFDDQDQSALLKELTVDLLEE 133 >gi|330891622|gb|EGH24283.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. mori str. 301020] Length = 1230 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + ++A + ++ L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEIAAPDGLIAELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|320095790|ref|ZP_08027434.1| UvrD/REP helicase [Actinomyces sp. oral taxon 178 str. F0338] gi|319977274|gb|EFW08973.1| UvrD/REP helicase [Actinomyces sp. oral taxon 178 str. F0338] Length = 1196 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 76/204 (37%), Gaps = 33/204 (16%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAA 75 + T + + P R V A AGSGKT + RVL L+ + PS++L LT T+ AA Sbjct: 32 TPTDEQVRVIEAPRRPLLVVAGAGSGKTETMSMRVLWLVANHEDIAPSSVLGLTFTRKAA 91 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ R+ + + + + L + E P L T Sbjct: 92 GELGDRLRQRLALLA------------------------RRVPSLRERLDEDPVSL---T 124 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 ++F E I+ + + I F + E + L+ + + + D + A Sbjct: 125 YNSFAERIVAEHGMRIGIDPDFTMLTEAGAVDLMTQIVEGWPTDL--DEDLSPSAAVGHC 182 Query: 196 LEISNDEDIETLISDIISNRTALK 219 L ++ + + R AL+ Sbjct: 183 LHLAGEVGEHGYTVE--EARDALE 204 >gi|298245873|ref|ZP_06969679.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963] gi|297553354|gb|EFH87219.1| UvrD/REP helicase [Ktedonobacter racemifer DSM 44963] Length = 1233 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 41/154 (26%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRV 82 Q A + A + A GSGKT L+ R+ ++ P+ +L LT ++ AA EM R+ Sbjct: 263 QQAAIEAPTPALIVAGPGSGKTSTLIGRIEYMVHTLQVPPAQILALTFSRKAAQEMEERL 322 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 +++T KV T HAFC Sbjct: 323 AQVLTRQLP----------------------------------------KVSTFHAFCAD 342 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 +++++ + F + DE + L+ + S Sbjct: 343 LLRRYGELVGLRPGFTLLDEAEGYFLLRQLSHSM 376 >gi|260774508|ref|ZP_05883422.1| ATP-dependent DNA helicase Rep [Vibrio metschnikovii CIP 69.14] gi|260610635|gb|EEX35840.1| ATP-dependent DNA helicase Rep [Vibrio metschnikovii CIP 69.14] Length = 672 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNSRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKDRVGQTLGKAESR-------------------------------------GLIVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + F++ D++ L++E +S L + + L++ I Sbjct: 84 FHTLGLTIIRREYKALGLKPGFSLFDDQDQLALLKELTESQLE----GDKDLLRQLLSTI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|71893767|ref|YP_279213.1| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae J] Length = 748 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 93/239 (38%), Gaps = 55/239 (23%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 ++ Q +Q +A S + A AG+GKT +L +++ ++ + A+PS +L LT T Sbjct: 1 MLLQLNEKQKIAVISNSSHLRIVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTNK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM +RV +++ S +++ Sbjct: 61 AAEEMRNRVEKLVGEKSK--------------------------------------DIQI 82 Query: 134 QTIHAFCEAIMQQFPL------EANI-TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 T H+ C I++ E + F I DE+ KK++E+ L D +E Sbjct: 83 LTFHSLCNLILRLEAKNIVELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYL-KANDDRDE 141 Query: 187 ELKKAFYEILEISN----DEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 AF I ISN ++ E L+ I + +K+ + + K E ++ Sbjct: 142 TKISAFDAIKFISNAKNWEKSPEDLLKSINNELDQIKVQVY---QKYLEKTKENNIIDF 197 >gi|323491621|ref|ZP_08096800.1| exodeoxyribonuclease V [Vibrio brasiliensis LMG 20546] gi|323314197|gb|EGA67282.1| exodeoxyribonuclease V [Vibrio brasiliensis LMG 20546] Length = 1205 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 11/128 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHP----------STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + P +L +T T+AA AE+ R+ Sbjct: 22 LIEASAGTGKTFTIAGLYLRLLLGHGSPETKHQVPLTVDQILVVTFTEAATAELRDRIRA 81 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I S + IQ SD +A +L+ V TIH FC+ ++ Sbjct: 82 RIHDARLAFARGQSGDPV-IQPLLEEVSDHKQAADILLQAERQMDEAAVYTIHGFCQRML 140 Query: 145 QQFPLEAN 152 Q E+ Sbjct: 141 TQNAFESG 148 >gi|254525779|ref|ZP_05137831.1| UvrD/REP helicase domain protein [Prochlorococcus marinus str. MIT 9202] gi|221537203|gb|EEE39656.1| UvrD/REP helicase domain protein [Prochlorococcus marinus str. MIT 9202] Length = 1208 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 8/160 (5%) Query: 35 WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 V A+AG+GK+ L VLR +L P +L L+ TK +E+ ++L Sbjct: 14 LVEASAGTGKSFTLSHIVLRNVLEKKVKPDEILLLSFTKNTCSELRDKILSRFHNLKLYL 73 Query: 94 DEILSAEI-TKIQGKKPNKSDMSKARHLLIT----ILETPGGLKVQTIHAFCEAIMQQFP 148 +I ++ N D K++ +I+ + LKV T HAFC I+ ++ Sbjct: 74 QSHNEIKIDNTLKDWYLNFKDKDKSKEKIISEIDNFINQFYKLKVTTFHAFCNNIIDEYS 133 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 +E +T I + + L ++ + L+ N EL Sbjct: 134 IEIGLTQDPYIENNIDN--LYKDVIDNLWIDDFLNLNHEL 171 >gi|212716229|ref|ZP_03324357.1| hypothetical protein BIFCAT_01145 [Bifidobacterium catenulatum DSM 16992] gi|212660741|gb|EEB21316.1| hypothetical protein BIFCAT_01145 [Bifidobacterium catenulatum DSM 16992] Length = 1398 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 27/166 (16%) Query: 18 SQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + + P+ V A AGSGKT+ + +R++ L+ P +L LT T+ AA+ Sbjct: 8 TDSPEQAAVIQAPSYEDVVVVAGAGSGKTYTMTRRIITLIEQGVSPEKILGLTFTRKAAS 67 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV ++ ++ L + T +V T Sbjct: 68 ELLSRVSAAVSR--------------------------NQRERGLKSANMTFLKPEVSTY 101 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 AF ++I++Q+ L + E + +LI + +M Sbjct: 102 DAFFQSIVRQYGLLVGFDQNTQPLSEAGAMQLIHTVLDKHMVDLMA 147 >gi|298488371|ref|ZP_07006402.1| Exodeoxyribonuclease V beta chain [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156996|gb|EFH98085.1| Exodeoxyribonuclease V beta chain [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 1230 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGTERSGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + ++A + ++ L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEIAAPDGLIAELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|72080737|ref|YP_287795.1| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae 7448] Length = 748 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 93/239 (38%), Gaps = 55/239 (23%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 ++ Q +Q +A S + A AG+GKT +L +++ ++ + A+PS +L LT T Sbjct: 1 MLLQLNEKQKIAVISNSSHLRIVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTNK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM +RV +++ S +++ Sbjct: 61 AAEEMRNRVEKLVGEKSK--------------------------------------DIQI 82 Query: 134 QTIHAFCEAIMQQFPL------EANI-TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 T H+ C I++ E + F I DE+ KK++E+ L D +E Sbjct: 83 LTFHSLCNLILRLEAKNIVELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYL-KANDDRDE 141 Query: 187 ELKKAFYEILEISN----DEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 AF I ISN ++ E L+ I + +K+ + + K E ++ Sbjct: 142 TKISAFDAIKFISNAKNWEKSPEDLLKSINNELDQIKVQVY---QKYLEKTKENNIIDF 197 >gi|254225834|ref|ZP_04919438.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V51] gi|125621648|gb|EAZ49978.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V51] Length = 1208 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + L+ ++E ++ +D S A LL+ + TIH FC+ ++ Sbjct: 84 RLHD-ARLAFARGASEDLLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F +L + Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178 >gi|301060341|ref|ZP_07201204.1| exodeoxyribonuclease V, beta subunit [delta proteobacterium NaphS2] gi|300445537|gb|EFK09439.1| exodeoxyribonuclease V, beta subunit [delta proteobacterium NaphS2] Length = 1223 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 79/200 (39%), Gaps = 14/200 (7%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT+ + LRL+L + P +L +T T AA E+ HR+ + Sbjct: 17 LIEASAGTGKTYTIGALYLRLVLGHGGKNGFHRALMPPEILVVTFTNAATEELRHRIRQK 76 Query: 86 ITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 + + + + + + G P S KAR L + L + TIH++ + Sbjct: 77 LVEAAGYFNGTCKGDGFLEGLAGAFPKASWPEKARVLEQSSL-WMDEAAIHTIHSWSSRM 135 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 ++Q S F + + L+EEA S + +++ S E Sbjct: 136 LRQHAFLCG--SLFDLELAPDDENLLEEAACDYWRSHLYHLPPRQLADLLALIQCSTPEA 193 Query: 204 IETLISDIISNRTALKLIFF 223 + + I+ L+ F Sbjct: 194 LLDRVRPILRRDPLLEGDPF 213 >gi|152972769|ref|YP_001337915.1| ATP-dependent DNA helicase Rep [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238892380|ref|YP_002917114.1| ATP-dependent DNA helicase Rep [Klebsiella pneumoniae NTUH-K2044] gi|330012126|ref|ZP_08307288.1| ATP-dependent DNA helicase Rep [Klebsiella sp. MS 92-3] gi|150957618|gb|ABR79648.1| Rep helicase, a single-stranded DNA-dependent ATPase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238544696|dbj|BAH61047.1| ATP-dependent DNA helicase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328533941|gb|EGF60600.1| ATP-dependent DNA helicase Rep [Klebsiella sp. MS 92-3] Length = 673 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVVLQQLISTISNWKND 145 >gi|90413496|ref|ZP_01221487.1| putative exodeoxyribonuclease V [Photobacterium profundum 3TCK] gi|90325428|gb|EAS41911.1| putative exodeoxyribonuclease V [Photobacterium profundum 3TCK] Length = 1227 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 14/178 (7%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--- 61 NS + + +D + Q + + + A+AG+GKT + LRLLL + + Sbjct: 13 NSSDLNHQPMDSANTPTKLQPMTFPLHGARLIEASAGTGKTFTIASLYLRLLLGHGNAET 72 Query: 62 -------PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDM 114 +L +T T+AA AE+ R+ I S + I+ SD Sbjct: 73 RHASELTVDQILVVTFTEAATAELRDRIRARIHDAQIAFCRGFSNDPV-IEPLLTAISDH 131 Query: 115 SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN--ITSHFAIADEEQSKKLIE 170 A +L+ + TIH FC+ ++ Q E+ + F + DE Q K L+ Sbjct: 132 KAAAQILLNAERQMDEAAIYTIHGFCQRMLTQNAFESGSRFNNEF-VTDESQLKSLVA 188 >gi|146294682|ref|YP_001185106.1| ATP-dependent DNA helicase Rep [Shewanella putrefaciens CN-32] gi|145566372|gb|ABP77307.1| ATP-dependent DNA helicase Rep [Shewanella putrefaciens CN-32] Length = 670 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + ++ + V A AGSGKT +++ ++ L+ + +T T AA Sbjct: 1 MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVEKCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + + +AR GL + T Sbjct: 61 REMKERIAQSMGR--------------------------KEAR-----------GLWIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + F++ D++ + L++E + L D +++L K+ Sbjct: 84 FHTLGLEIIKREHKVLGLKPGFSLFDDQDTLALLKELTQDEL-----DEDKDLLKSLAST 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|213423081|ref|ZP_03356099.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 222 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 >gi|319427918|gb|ADV55992.1| ATP-dependent DNA helicase Rep [Shewanella putrefaciens 200] Length = 670 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 65/182 (35%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + ++ + V A AGSGKT +++ ++ L+ + +T T AA Sbjct: 1 MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVEKCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + + +AR GL + T Sbjct: 61 REMKERIAQSMGR--------------------------KEAR-----------GLWIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + F++ D++ + L++E + L D +++L K+ Sbjct: 84 FHTLGLEIIKREHKVLGLKPGFSLFDDQDTLALLKELTQDEL-----DEDKDLLKSLAST 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|283852071|ref|ZP_06369345.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B] gi|283572461|gb|EFC20447.1| UvrD/REP helicase [Desulfovibrio sp. FW1012B] Length = 1062 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 84/227 (37%), Gaps = 39/227 (17%) Query: 34 AWVSANAGSGKTHILVQRVLRL---------------LLANAHPSTLLCLTHTKAAAAEM 78 V A+AGSGKTH L +R + L L A ++ +T T AAAEM Sbjct: 3 IQVKASAGSGKTHALTERFIALALGTKGNLPRICADSLEAGYALPEIMAVTFTNKAAAEM 62 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + + + + +KAR L +L L ++TI + Sbjct: 63 RERVFHRLKTMA-------------LGLGGTDPASRAKARDELEELLIHAERLNIRTIDS 109 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQS--KKLIEEAKKST-----LASIMLDNNEELKKA 191 + + F LE + F A ++ + L + S L+ + + L + Sbjct: 110 LLFLLARAFALELGLRPDFEPAFDDSAILADLYDRLAASLPEDPALSRLFGEAQAALLQG 169 Query: 192 FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 L + E L++ ++ R ++ + R +E+ L Sbjct: 170 VTGFLPMDRFR--ERLMA--VAGRLLVEPLGHAADADALRLGLERRL 212 >gi|297157455|gb|ADI07167.1| ATP-dependent DNA helicase [Streptomyces bingchenggensis BCW-1] Length = 1221 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 57/160 (35%), Gaps = 13/160 (8%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T A Sbjct: 16 GIPFTPEQIACITAPPSPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 75 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E+S RV + + + + + + + G + Sbjct: 76 AGELSERVRKALVKAGVTDPDPVPPPAGAQAPEAAQAPETA------------AGEPNIS 123 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 T HAF ++++ L + + + +L + Sbjct: 124 TYHAFAGQLLKEHGLRIGLEPGARLLADATRFQLAARVLR 163 >gi|34580461|ref|ZP_00141941.1| DNA helicase II [Rickettsia sibirica 246] gi|28261846|gb|EAA25350.1| DNA helicase II [Rickettsia sibirica 246] Length = 653 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 43/158 (27%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 +Q + A AG+GKT +L R+ ++ N A P +L +T T AA EM Sbjct: 11 NPEQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + RV ++ + GL + T H+ Sbjct: 71 AERVNSLVNCY----------------------------------------GLNIGTFHS 90 Query: 139 FCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKK 174 I++ L + + F I + KL+++ K Sbjct: 91 MAARILRDQIEHLNLGLNNRFTIISHDDQLKLVKDIVK 128 >gi|238650278|ref|YP_002916130.1| DNA helicase II [Rickettsia peacockii str. Rustic] gi|238624376|gb|ACR47082.1| DNA helicase II [Rickettsia peacockii str. Rustic] Length = 653 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 43/158 (27%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 +Q + A AG+GKT +L R+ ++ N A P +L +T T AA EM Sbjct: 11 NPEQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + RV +I + GL + T H+ Sbjct: 71 AERVNSLINCY----------------------------------------GLNIGTFHS 90 Query: 139 FCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKK 174 I++ L + + F I + KL+++ K Sbjct: 91 MAARILRDQIEHLNLGLNNRFTIISHDDQLKLVKDIVK 128 >gi|296105331|ref|YP_003615477.1| ATP-dependent DNA helicase Rep [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059790|gb|ADF64528.1| ATP-dependent DNA helicase Rep [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 674 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 >gi|294155500|ref|YP_003559884.1| ATP-dependent DNA helicase [Mycoplasma crocodyli MP145] gi|291600036|gb|ADE19532.1| ATP-dependent DNA helicase [Mycoplasma crocodyli MP145] Length = 724 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 40/165 (24%) Query: 14 IDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 I+LI ++Q A + A AG+GKT +L +++ L+ P +L +T T Sbjct: 6 INLIKDLNTQQAEAVKYFDTHLRIIAGAGAGKTKVLTRKIAYLINEMGVLPRQILAVTFT 65 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 A EM RV + + + + Sbjct: 66 NKACKEMYQRVAQYCST--------------------------------------SIHQI 87 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T HAFC I+++ + F I DE +++ K Sbjct: 88 NIFTFHAFCGHILRREAALLGYKNDFQIIDEADKTMILKNIYKDL 132 >gi|257488080|ref|ZP_05642121.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331013532|gb|EGH93588.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 1230 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + ++A + ++ L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEIAAPDGLIAELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|307299290|ref|ZP_07579091.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915086|gb|EFN45472.1| UvrD/REP helicase [Thermotogales bacterium mesG1.Ag.4.2] Length = 652 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 40/174 (22%) Query: 8 QEHSETIDLISQ-TKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 + SE +++ EQL A + + + + A GSGKT ++ ++ L+ + +P + Sbjct: 6 LKSSEIPGFLTEGLDEEQLKAVIESSGRSLIVAGPGSGKTRVITYKIAHLVSNSINPQNI 65 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T+AA+ EM R + + Sbjct: 66 LLVTFTRAASREMIDRARRVSGS------------------------------------- 88 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 G+ T H C ++++ A + +F I D E +K LI+ + L Sbjct: 89 -NLKGMLSGTFHHVCNYFLRKYAKAAGLAENFTILDREDAKDLIKHCRTELLEE 141 >gi|261225551|ref|ZP_05939832.1| DNA helicase and single-stranded DNA-dependent ATPase [Escherichia coli O157:H7 str. FRIK2000] Length = 237 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + ++F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + ++ R + Sbjct: 146 LKTPAQAAAEAKGERDRI 163 >gi|258620942|ref|ZP_05715976.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM573] gi|258586330|gb|EEW11045.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio mimicus VM573] Length = 1208 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + L+ ++E ++ +D S A LL+ + TIH FC+ ++ Sbjct: 84 RLHD-ARLAFARGASEDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F +L + Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178 >gi|239947646|ref|ZP_04699399.1| ATP-dependent DNA helicase PcrA [Rickettsia endosymbiont of Ixodes scapularis] gi|239921922|gb|EER21946.1| ATP-dependent DNA helicase PcrA [Rickettsia endosymbiont of Ixodes scapularis] Length = 653 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 43/158 (27%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 +Q + A AG+GKT +L R+ ++ N A P +L +T T AA EM Sbjct: 11 NPEQQKAVLHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLASPQNILAVTFTNKAAKEM 70 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + RV +I + GL + T H+ Sbjct: 71 AERVNSLINCY----------------------------------------GLNIGTFHS 90 Query: 139 FCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKK 174 I++ L + + F I + KL+++ K Sbjct: 91 MAARILRDQIEHLNLGLNNRFTIISHDDQLKLVKDIVK 128 >gi|330962479|gb|EGH62739.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. maculicola str. ES4326] Length = 1230 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGSEQSGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + + A + ++ L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEIPAPDGLIAELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|262040910|ref|ZP_06014136.1| ATP-dependent helicase PcrA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041799|gb|EEW42844.1| ATP-dependent helicase PcrA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 673 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVVLQQLISTISNWKND 145 >gi|262170720|ref|ZP_06038398.1| exodeoxyribonuclease V beta chain [Vibrio mimicus MB-451] gi|261891796|gb|EEY37782.1| exodeoxyribonuclease V beta chain [Vibrio mimicus MB-451] Length = 1208 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + L+ ++E ++ +D S A LL+ + TIH FC+ ++ Sbjct: 84 RLHD-ARLAFARGASEDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F +L + Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178 >gi|258406127|ref|YP_003198869.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692] gi|257798354|gb|ACV69291.1| UvrD/REP helicase [Desulfohalobium retbaense DSM 5692] Length = 714 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 79/205 (38%), Gaps = 44/205 (21%) Query: 11 SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 + I+ QL A V A AGSGKT +V R+ RL+ + P ++L LT Sbjct: 1 MDHIEYERHLNQAQLEAVQTLQGPVLVIAGAGSGKTRTVVYRLARLVENSVPPESILLLT 60 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T+ AA EM +++A HL L Sbjct: 61 FTRKAANEM-----------------------------------LTRAAHLAGQGLHGVA 85 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 G T HAF ++++F +I D ++ ++++ ++ + + + + Sbjct: 86 G---GTFHAFAFGMLRRFGQRLGYDQGVSIMDRSDAEGVVKQVRE--MEGVGKGDRSFPR 140 Query: 190 K-AFYEILEISNDEDIETLISDIIS 213 K A ++ + ++ E + DI++ Sbjct: 141 KGAVLSLMSKARNK--ERDLEDILA 163 >gi|88797062|ref|ZP_01112652.1| exodeoxyribonuclease V, beta subunit [Reinekea sp. MED297] gi|88779931|gb|EAR11116.1| exodeoxyribonuclease V, beta subunit [Reinekea sp. MED297] Length = 1130 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 5/153 (3%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL- 92 + A+AG+GKT+ +V+ LRLLL +L +T TKAA AE+ +R+ + + Sbjct: 22 LIEASAGTGKTYNIVRIYLRLLLEKELTVDQILVMTFTKAATAEIRNRLSAFLREALQIW 81 Query: 93 -SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 + + + D KAR + L + TIH FC+ + Q + Sbjct: 82 ETQNYRDDKERAFYETIRRRVDPEKARLQMRQALLQLDEAAIYTIHGFCKRALSQQAFFS 141 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 ++ F E S++L+ +A + I + Sbjct: 142 GLS--FHANMEADSQELMLQATQDWYRRIQQAD 172 >gi|320008691|gb|ADW03541.1| UvrD/REP helicase [Streptomyces flavogriseus ATCC 33331] Length = 1174 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 61/184 (33%), Gaps = 31/184 (16%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T A Sbjct: 26 GIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 85 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E++ RV + A ++L + PG + Sbjct: 86 AGELAERVRRALVAAGVTDPDVLDPD-------------------------NPPGEPSIS 120 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HAF ++ L + + + +L + L ++F Sbjct: 121 TYHAFAGRLLTDHGLRIGLEPTSRLLADATRYQLAARVLRE-----APGPYPALTRSFPT 175 Query: 195 ILEI 198 ++ Sbjct: 176 LVSD 179 >gi|320540197|ref|ZP_08039852.1| DNA helicase and single-stranded DNA-dependent ATPase [Serratia symbiotica str. Tucson] gi|320029863|gb|EFW11887.1| DNA helicase and single-stranded DNA-dependent ATPase [Serratia symbiotica str. Tucson] Length = 674 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 72/202 (35%), Gaps = 45/202 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ + +T T AA EM Sbjct: 4 NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIHHCGYQARHIAAVTFTNKAAHEM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV++ + +AR GL + T H Sbjct: 64 KERVVQTMGR--------------------------KEAR-----------GLMISTFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + HF++ D++ L+++ L L+N++ L + Sbjct: 87 LGLEIIKREYAVLEMKPHFSLFDDQDQLALLKD-----LTEKWLENDKTLVAQLISTISH 141 Query: 199 SNDEDIE--TLISDIISNRTAL 218 ++ I+ I+ S R L Sbjct: 142 WKNDLIDPTQAIALAHSERDKL 163 >gi|319947958|ref|ZP_08022138.1| UvrD/REP helicase [Dietzia cinnamea P4] gi|319438386|gb|EFV93326.1| UvrD/REP helicase [Dietzia cinnamea P4] Length = 1140 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 73/207 (35%), Gaps = 30/207 (14%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAA 75 + + + +D + +V A AG+GKT+ LV+R+ LLL +A P + +T T+ AA Sbjct: 4 LPDQAARDRVETDTAATLFVEAGAGTGKTYALVRRLSTLLLDDAVPIDRIAAITFTEKAA 63 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AE+ R+ + D L + T Sbjct: 64 AELRDRLRVHLVERRAEGD------------------------TRADKALAGLDTAAIGT 99 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM-----LDNNEELKK 190 +H+F ++ + PLEA I + +E + + + + L + Sbjct: 100 LHSFALRLLSENPLEAGIPPKVTAQQDTAEAAAVEALWQECATVLFGSGPTAERSGNLAR 159 Query: 191 AFYEILEISNDEDIETLISDIISNRTA 217 A ++L+ + + + Sbjct: 160 AVDDMLDAGVGARAFRGVVEALHRDWD 186 >gi|197287123|ref|YP_002152995.1| ATP-dependent DNA helicase Rep [Proteus mirabilis HI4320] gi|194684610|emb|CAR46496.1| ATP-dependent DNA helicase [Proteus mirabilis HI4320] Length = 673 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 53/158 (33%), Gaps = 38/158 (24%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q + V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQKAVEYVSGPCLVLAGAGSGKTRVITNKIAYLIRQCRYSAKQIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + + GL + T H Sbjct: 67 VAQTLGK-------------------------------------QEAKGLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 I+++ I S+F++ D++ L++E L Sbjct: 90 EIIKREYKALGIKSNFSLFDDQDQSALLKELTVDLLEE 127 >gi|13358064|ref|NP_078338.1| DNA helicase II [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762416|ref|YP_001752584.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920094|ref|ZP_02931516.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508498|ref|ZP_02958027.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701747|ref|ZP_02971434.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|11267430|pir||D82883 DNA helicase II UU501 [imported] - Ureaplasma urealyticum gi|6899500|gb|AAF30913.1|AE002148_5 DNA helicase II [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827993|gb|ACA33255.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902450|gb|EDT48739.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675926|gb|EDT87831.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701018|gb|EDU19300.1| ATP-dependent DNA helicase PcrA [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 743 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 44/215 (20%), Positives = 72/215 (33%), Gaps = 59/215 (27%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 ID + ++ + V A AG+GKT +L R+ L+ N HPS +L T T Sbjct: 5 IDYSRLNQEQKEAVTADLGPQLVIAGAGTGKTSVLTLRIAYLITEKNIHPSRILGFTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV + I Sbjct: 65 KAADEMKERVGKTIGVSIPYL--------------------------------------- 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST---------------- 176 T H+ C I+QQ N ++ I D + + L++E Sbjct: 86 -STFHSMCVKILQQDIHYLNYHNNIKIIDTDDQEVLLKEIFDQLNIEKKSQVIKKIIKTI 144 Query: 177 --LASIMLDNNEELKKAFYEILEISNDEDIETLIS 209 + + D N+ L + ++ LE+ + D + L+ Sbjct: 145 SKVKNKFFDQNDMLNEKNHKYLELVDLNDAQRLVD 179 >gi|302188703|ref|ZP_07265376.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. syringae 642] Length = 1230 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 63/161 (39%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + ++A + ++ + S L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEIAAPDGLIAELREQFDASLWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|320326111|gb|EFW82168.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. glycinea str. B076] Length = 1230 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + ++A + ++ L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEIAAPDGLIAELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|71735593|ref|YP_272988.1| exodeoxyribonuclease V subunit beta [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556146|gb|AAZ35357.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. phaseolicola 1448A] Length = 1230 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGTEHSGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + ++A + ++ L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEIAAPDGLIAELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|295095198|emb|CBK84288.1| ATP-dependent DNA helicase Rep [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 674 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 >gi|289624489|ref|ZP_06457443.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330870390|gb|EGH05099.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 1230 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + ++A + ++ L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEIAAPDGLIAELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|289649175|ref|ZP_06480518.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. aesculi str. 2250] Length = 1230 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + ++A + ++ L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEIAAPDGLIAELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|94312409|ref|YP_585619.1| ATP-dependent DNA helicase Rep [Cupriavidus metallidurans CH34] gi|93356261|gb|ABF10350.1| DNA helicase and single-stranded DNA-dependent ATPase [Cupriavidus metallidurans CH34] Length = 695 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 32/157 (20%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 ++ +SE + D V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 4 GLNSAQSEAVRYFD--GPCLVLAGAGSGKTRVITQKIAHLIEDKGFEPRHIAAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ +++ + + + + L V Sbjct: 62 AKEMQERIGKLMEGKTTREGKRIPLK-----------------------------QLTVC 92 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++ + F+I D + L++E Sbjct: 93 TFHSLGVQILRMEAEHLGLKPQFSIMDSDDCFGLVQE 129 >gi|330941258|gb|EGH44122.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. pisi str. 1704B] Length = 1230 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + ++A + ++ S L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEIAAPDGLIAELREQFEASLWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|320330698|gb|EFW86674.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. glycinea str. race 4] Length = 1230 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + ++A + ++ L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEIAAPDGLIAELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|328947216|ref|YP_004364553.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489] gi|328447540|gb|AEB13256.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489] Length = 736 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 62/163 (38%), Gaps = 43/163 (26%) Query: 15 DLISQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 D +S EQ A + S + A AGSGKT ++ ++ ++ +P+++L +T TK Sbjct: 5 DYLSVLNKEQREAVEHEGSPLLILAGAGSGKTRVITTKIAYMISELGINPASILAVTFTK 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R + + Sbjct: 65 KAAEEMKERAINLEPRAQKS---------------------------------------H 85 Query: 133 VQTIHAFCEAIMQQFPLEANIT--SHFAIADEEQSKKLIEEAK 173 ++T H+F ++ ++ I ++F + D++ + LI +A Sbjct: 86 IRTFHSFGAWFLRLCAEDSGIGIQNNFTVYDDDDACSLISKAV 128 >gi|213582501|ref|ZP_03364327.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 486 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 >gi|109898077|ref|YP_661332.1| exodeoxyribonuclease V, beta subunit [Pseudoalteromonas atlantica T6c] gi|109700358|gb|ABG40278.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Pseudoalteromonas atlantica T6c] Length = 1320 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 8/140 (5%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA----HPSTLLCLTHTKAAAAEMSHRVLEIIT-AW 89 + A+AG+GKT+ +V LRLLL + +L +T T AA AE+ R+ + + A+ Sbjct: 16 LIEASAGTGKTYTIVNLYLRLLLGDECTPLSVDKILVVTFTNAATAELKQRIRQRLQRAY 75 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + S + T+ ++ + ++ R LL ++ V TIH FC+ ++ Sbjct: 76 LDFYAGVSSDDFTQYLIERSDNIELDCHRLLL--AIKQMDDAAVYTIHGFCQRMLSLHAF 133 Query: 150 EANITSHFA-IADEEQSKKL 168 E+ + + DE Q KL Sbjct: 134 ESGAMYEQSLVLDESQWLKL 153 >gi|332039001|gb|EGI75430.1| UvrD/REP helicase [Hylemonella gracilis ATCC 19624] Length = 714 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 38/151 (25%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 ++Q + V A AGSGKT ++ ++ RL+ A P + +T T AAAEM R Sbjct: 8 AQQDAVNHLHGPCLVLAGAGSGKTRVITHKIGRLIQAGLEPQRITAITFTNKAAAEMRER 67 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 +I + +++ T HA Sbjct: 68 TKGLIGRDAK--------------------------------------KVRICTFHALGV 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 +++ + ++F+I D + ++++A Sbjct: 90 HLLRGDGEALGLKANFSIMDSDDVTSILKDA 120 >gi|283834549|ref|ZP_06354290.1| ATP-dependent DNA helicase Rep [Citrobacter youngae ATCC 29220] gi|291069679|gb|EFE07788.1| ATP-dependent DNA helicase Rep [Citrobacter youngae ATCC 29220] Length = 673 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 ++++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DVIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKLILQQLISTISNWKND 145 >gi|149194062|ref|ZP_01871160.1| ATP-DEPENDENT DNA HELICASE [Caminibacter mediatlanticus TB-2] gi|149136015|gb|EDM24493.1| ATP-DEPENDENT DNA HELICASE [Caminibacter mediatlanticus TB-2] Length = 677 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 64/185 (34%), Gaps = 38/185 (20%) Query: 11 SETIDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 SE +D + + Q A+ + + A AGSGKT L R+ LL P+ L LT Sbjct: 13 SEKMDFLEELNEAQKKAATHIDGALLILAGAGSGKTKTLTSRLAYLLSLGIDPANTLTLT 72 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA+EM R L +I +L Sbjct: 73 FTNKAASEMRERALSLIQQNIPHPPLLL-------------------------------- 100 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 T H F ++ + N ++F I D + KK+++ + M + K Sbjct: 101 -----TFHKFGLLFLKLYIHLINRDNNFVIIDSDDQKKILKSISADLPPNFMSKEISKYK 155 Query: 190 KAFYE 194 +F Sbjct: 156 NSFLT 160 >gi|324007448|gb|EGB76667.1| ATP-dependent DNA helicase Rep [Escherichia coli MS 57-2] Length = 673 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 62/180 (34%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTDGLIE----DDKLILQQLISTISNWKND 145 >gi|304390836|ref|ZP_07372788.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325719|gb|EFL92965.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 1191 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 83/196 (42%), Gaps = 11/196 (5%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 T+ + + + P V A AGSGKT + R++ ++ P +L LT T+ AAAE Sbjct: 25 PTREQSAVITAPRGQLLVVAGAGSGKTETIANRLVYWVVNAGIVPEAILGLTFTRKAAAE 84 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGK--KPNKSDMSKARHLLITILE---TPGGLK 132 M+ R + ++ L + + T K D+++ R T+++ TP L+ Sbjct: 85 MAARFSLRLDRFASLLESVQERRQTAEVNAVLKAADFDLNQLRQRFDTLVQRGMTPEMLR 144 Query: 133 ----VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 V T ++ ++ +F S F + +++ + +S ++ E Sbjct: 145 HPVSVSTYDSYAGTLLTEFGTLVGRESGFTTITDAARYQIMTDVVQSWTGALGTKREGEN 204 Query: 189 KKAFYE-ILEISNDED 203 + +L ++ND + Sbjct: 205 AENLVNILLSLANDTN 220 >gi|144227619|gb|AAZ44502.2| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae J] Length = 753 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 55/240 (22%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +++ Q +Q +A S + A AG+GKT +L +++ ++ + A+PS +L LT T Sbjct: 5 NILLQLNEKQKIAVISNSSHLRIVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM +RV +++ S ++ Sbjct: 65 KAAEEMRNRVEKLVGEKSK--------------------------------------DIQ 86 Query: 133 VQTIHAFCEAIMQQFPL------EANI-TSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 + T H+ C I++ E + F I DE+ KK++E+ L D + Sbjct: 87 ILTFHSLCNLILRLEAKNIVELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYL-KANDDRD 145 Query: 186 EELKKAFYEILEISN----DEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 E AF I ISN ++ E L+ I + +K+ + + K E ++ Sbjct: 146 ETKISAFDAIKFISNAKNWEKSPEDLLKSINNELDQIKVQVY---QKYLEKTKENNIIDF 202 >gi|312601375|gb|ADQ90630.1| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae 168] Length = 753 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 55/240 (22%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +++ Q +Q +A S + A AG+GKT +L +++ ++ + A+PS +L LT T Sbjct: 5 NILLQLNEKQKIAVISNSSHLRIVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM +RV +++ S ++ Sbjct: 65 KAAEEMRNRVEKLVGEKSK--------------------------------------DIQ 86 Query: 133 VQTIHAFCEAIMQQFPL------EANI-TSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 + T H+ C I++ E + F I DE+ KK++E+ L D + Sbjct: 87 ILTFHSLCNLILRLEAKNIVELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYL-KANDDRD 145 Query: 186 EELKKAFYEILEISN----DEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 E AF I ISN ++ E L+ I + +K+ + + K E ++ Sbjct: 146 ETKISAFDAIKFISNAKNWEKSPEDLLKSINNELDQIKVQVY---QKYLEKTKENNIIDF 202 >gi|326776760|ref|ZP_08236025.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1] gi|326657093|gb|EGE41939.1| UvrD/REP helicase [Streptomyces cf. griseus XylebKG-1] Length = 1199 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 84/237 (35%), Gaps = 52/237 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T A Sbjct: 48 GIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 107 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E++ RV + + A +++ + PG + Sbjct: 108 AGELAERVRKALIAAGVTDPDVIDPD-------------------------NPPGEPTIS 142 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS-------------TLASIM 181 T HAF ++ + L + + + +L + + TL S + Sbjct: 143 TYHAFAGRLLTEHGLRIGLEPSTRLLADATRYQLAAKVLREAPGPYPALTRSFSTLVSDL 202 Query: 182 LDNNEELKKAFYEILEISNDEDIET-LISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 L + EL + ++ E +T L+ D+ + R S RKI E + Sbjct: 203 LALDGELSE---HLVRPGTLETYDTELLRDLAAAR---------LSNADLRKIPEAA 247 >gi|224823759|ref|ZP_03696868.1| UvrD/REP helicase [Lutiella nitroferrum 2002] gi|224604214|gb|EEG10388.1| UvrD/REP helicase [Lutiella nitroferrum 2002] Length = 586 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 38/177 (21%), Positives = 75/177 (42%), Gaps = 16/177 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLLA---NAHP---STLLCLTHTKAAAAEMSHRVLEIITA 88 + A+AG+GKT + RLLL A P +L +T+TKAA AE+ R+ + Sbjct: 18 LIEASAGTGKTWTIAALYTRLLLEERDGAPPPSIEQILVVTYTKAATAELRERLRHRLAE 77 Query: 89 WSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + + D + + + + + + AR L + + TIH FC+ ++ Sbjct: 78 LAAVLDGTPTRDGFLLAMAQRFAEPAARELARQRLTAAITGFDAAAIYTIHGFCQRVLTD 137 Query: 147 FPLEANITSHFA-IADEEQS-KKLIEEAKKS------TLASIMLDNNEELKKAFYEI 195 E+ T IAD+ + +++++ + LA ++ + E ++ Sbjct: 138 AAFESGQTFTAELIADDAERLTEVVDDFWRRRVVADALLARVLAEAGETPDSWLAQV 194 >gi|144575418|gb|AAZ53772.2| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae 7448] Length = 753 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 55/240 (22%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +++ Q +Q +A S + A AG+GKT +L +++ ++ + A+PS +L LT T Sbjct: 5 NILLQLNEKQKIAVISNSSHLRIVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM +RV +++ S ++ Sbjct: 65 KAAEEMRNRVEKLVGEKSK--------------------------------------DIQ 86 Query: 133 VQTIHAFCEAIMQQFPL------EANI-TSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 + T H+ C I++ E + F I DE+ KK++E+ L D + Sbjct: 87 ILTFHSLCNLILRLEAKNIVELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYL-KANDDRD 145 Query: 186 EELKKAFYEILEISN----DEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 E AF I ISN ++ E L+ I + +K+ + + K E ++ Sbjct: 146 ETKISAFDAIKFISNAKNWEKSPEDLLKSINNELDQIKVQVY---QKYLEKTKENNIIDF 202 >gi|86148764|ref|ZP_01067035.1| ATP-dependent DNA helicase Rep [Vibrio sp. MED222] gi|85833442|gb|EAQ51629.1| ATP-dependent DNA helicase Rep [Vibrio sp. MED222] Length = 260 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQECGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGKGESK-------------------------------------GLIVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E L +D +++L +A Sbjct: 84 FHTMGLTIIRREYKALGLKAGFSLFDDQDQLALLKE-----LTERQIDGDKDLLRALMST 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|229521160|ref|ZP_04410580.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TM 11079-80] gi|229341692|gb|EEO06694.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TM 11079-80] Length = 1208 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + L+ +++ ++ +D S A LL+ + TIH FC+ ++ Sbjct: 84 RLHD-ARLAFARGASDDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F +L + Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178 >gi|306815184|ref|ZP_07449337.1| ATP-dependent DNA helicase Rep [Escherichia coli NC101] gi|305851553|gb|EFM52007.1| ATP-dependent DNA helicase Rep [Escherichia coli NC101] Length = 673 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 62/180 (34%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTDGLIE----DDKLILQQLISTISNWKND 145 >gi|213022136|ref|ZP_03336583.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 321 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 >gi|269793285|ref|YP_003318189.1| Exodeoxyribonuclease V [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100920|gb|ACZ19907.1| Exodeoxyribonuclease V [Thermanaerovibrio acidaminovorans DSM 6589] Length = 1125 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 65/164 (39%), Gaps = 26/164 (15%) Query: 16 LISQTKSEQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHTK 72 L + +QL A T V A AG+GKTH L RV L+ + LT T+ Sbjct: 12 LEANYSPDQLRAVTSTGPVTVVKAGAGTGKTHTLSGRVAYLMATQEGLELDQVAVLTFTE 71 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ +I+ W G++ + +A + G Sbjct: 72 KAAQEMGERIRDILLHW----------------GRELKMPRLEEASRRV-------GEAY 108 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + TIH+F ++++ P EA + ++A + + E + Sbjct: 109 ISTIHSFALRLIRENPAEAKLPVDASVAPRCSTDEFRAELAMAF 152 >gi|194367786|ref|YP_002030396.1| exodeoxyribonuclease V subunit beta [Stenotrophomonas maltophilia R551-3] gi|194350590|gb|ACF53713.1| exodeoxyribonuclease V, beta subunit [Stenotrophomonas maltophilia R551-3] Length = 1226 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 17/175 (9%) Query: 20 TKSEQLLASDPTRSA------WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 K Q +A DP + + A+AG+GKT L RL++ +L +T T Sbjct: 7 DKETQRMAGDPYLALPLDGIRLIEASAGTGKTFTLATLFTRLVVEQGLRIGQILAVTFTD 66 Query: 73 AAAAEMSHRVLEIITAWSHLSD------EILSAEITKIQGKKPNKSDMSKA---RHLLIT 123 AA E+ R+ E + + L D E A +T+ ++ + A + L Sbjct: 67 AATQELRKRIRERLALAARLVDLEPAEGEAPDARLTRDVLQRHLQGGSESASALKRRLQV 126 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 + + TIH FC ++++ LE+ T ++L+EE Sbjct: 127 AADEIDLASIFTIHGFCTRVLREHALESGHTFDPPELLASD-RELLEELAADLWR 180 >gi|330977542|gb|EGH77487.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 575 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 47 RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 106 Query: 81 RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + ++A + ++ S L + V TIH+ Sbjct: 107 RIRTRLAEAARFFRDEIAAPDGLIADLREQFEASLWPACASRLDIAAQWMDEAAVSTIHS 166 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 167 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 205 >gi|54020194|ref|YP_115928.1| ATP-dependent helicase PcrA [Mycoplasma hyopneumoniae 232] gi|53987367|gb|AAV27568.1| ATP-dependent DNA helicase [Mycoplasma hyopneumoniae 232] Length = 769 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 55/240 (22%) Query: 15 DLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 +++ Q +Q +A S + A AG+GKT +L +++ ++ + A+PS +L LT T Sbjct: 21 NILLQLNEKQKIAVISNSSHLRIVAGAGTGKTSVLTKKIAYIINESLAYPSRILALTFTN 80 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM +RV +++ S ++ Sbjct: 81 KAAEEMRNRVEKLVGEKSK--------------------------------------DIQ 102 Query: 133 VQTIHAFCEAIMQQFPL------EANI-TSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 + T H+ C I++ E + F I DE+ KK++E+ L D + Sbjct: 103 ILTFHSLCNLILRLEAKNIVELSEIPLSDYRFNIIDEQDQKKIVEKLLGKYL-KANDDRD 161 Query: 186 EELKKAFYEILEISN----DEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 E AF I ISN ++ E L+ I + +K+ + + K E ++ Sbjct: 162 ETKISAFDAIKFISNAKNWEKSPEDLLKSINNELDQIKVQVY---QKYLEKTKENNIIDF 218 >gi|262191393|ref|ZP_06049582.1| exodeoxyribonuclease V beta chain [Vibrio cholerae CT 5369-93] gi|262032724|gb|EEY51273.1| exodeoxyribonuclease V beta chain [Vibrio cholerae CT 5369-93] Length = 1208 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCVETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + L+ +++ ++ +D S A LL+ + TIH FC+ ++ Sbjct: 84 RLHD-ARLAFARGASDDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F +L + Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178 >gi|302536761|ref|ZP_07289103.1| UvrD/REP helicase [Streptomyces sp. C] gi|302445656|gb|EFL17472.1| UvrD/REP helicase [Streptomyces sp. C] Length = 832 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 74/207 (35%), Gaps = 29/207 (14%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T A Sbjct: 23 GIPFTPEQLACVTAPAAPQVIVAGAGSGKTTVMAARVVWLVGTGTVAPEQVLGLTFTNKA 82 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E++ RV + + + A++ G ++ Sbjct: 83 AGELAERVRKALAQAGVTDPDPSPADVEAGTAG---------------------GEPRIS 121 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HAF +++ L + + + +L + + L K+ + Sbjct: 122 TYHAFAGQLLKDHGLRIGLEPSARLLADATRFQLAAKVLRE-----APGPYPSLTKSVPD 176 Query: 195 ILEISNDEDIETLISDIISNRTALKLI 221 ++ S+ ++ +S+ + AL+ Sbjct: 177 LV--SDLLALDGELSEHLVEPDALRAY 201 >gi|237747303|ref|ZP_04577783.1| rep helicase [Oxalobacter formigenes HOxBLS] gi|229378654|gb|EEO28745.1| rep helicase [Oxalobacter formigenes HOxBLS] Length = 687 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 60/161 (37%), Gaps = 38/161 (23%) Query: 15 DLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 D+ ++ ++Q A V A AGSGKT ++ Q++ L+ + + LT T Sbjct: 4 DVFAKLNAQQHEAVYYMEGPCLVLAGAGSGKTRVITQKIAHLIGSGQYEARHIAALTFTN 63 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAEM R+ +++ + L Sbjct: 64 KAAAEMQERISRLLSEPA------------------------------------DASQLT 87 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + T H+ I++Q E N+ F+I D + L+++ Sbjct: 88 ISTFHSLGVKILRQEAKELNLKDRFSILDSDDCFSLVQDLA 128 >gi|194734421|ref|YP_002116848.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197301058|ref|ZP_02663427.2| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194709923|gb|ACF89144.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288746|gb|EDY28121.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|267996194|gb|ACY91079.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|323132265|gb|ADX19695.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326625637|gb|EGE31982.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 707 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 40 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 99 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 100 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 122 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 123 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 178 >gi|29839776|ref|NP_828882.1| exodeoxyribonuclease V, beta subunit [Chlamydophila caviae GPIC] gi|29834123|gb|AAP04760.1| exodeoxyribonuclease V, beta subunit [Chlamydophila caviae GPIC] Length = 1045 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 6/128 (4%) Query: 27 ASDPTRSA----WVSANAGSGKTHILVQRVLRLLLANA--HPSTLLCLTHTKAAAAEMSH 80 +P S ++ A+AG+GKT + Q VLR LL + H +L +T T AA E+ Sbjct: 6 IFNPQTSIRGKYFLEASAGTGKTFTIEQIVLRALLEGSVSHVENILAVTFTNAATNELKL 65 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ + + +L + + S++ + L T + + TIH FC Sbjct: 66 RIQDNLKQALCQIKSVLEDPSKSLPPYLKDTSNVKLLYMQVRNALATIDRMAIFTIHGFC 125 Query: 141 EAIMQQFP 148 ++QQ Sbjct: 126 NYVLQQHF 133 >gi|46445643|ref|YP_007008.1| putative exodeoxyribonuclease V beta chain [Candidatus Protochlamydia amoebophila UWE25] gi|46399284|emb|CAF22733.1| putative exodeoxyribonuclease V beta chain [Candidatus Protochlamydia amoebophila UWE25] Length = 1166 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 96/235 (40%), Gaps = 29/235 (12%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANA------HPSTLLCLTHTKAAAAEMSHRVLEI 85 + + A+AG+GKT + V+RLL+ N S +L +T TKAA ++ R+ Sbjct: 10 QHYLLEASAGTGKTFSIQNIVVRLLIENQLEQEALPLSKILVVTFTKAATRDLKLRIRLN 69 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMS-------KARHLLITILETPGGLKVQTIHA 138 I + +E LS K+ + KA+ L L ++ TIHA Sbjct: 70 IEYALEVFNEWLSHSNVLENTPDYLKAVIEAGIESVLKAKKKLQQALFEFDQAQIFTIHA 129 Query: 139 FCEAIMQQFPLEANITSHFAIADEE----QSKKLIEEAKKSTLA---------SIMLDNN 185 FC +++Q+ +E++I H + +E + +I++ ++ + I+L ++ Sbjct: 130 FCARMLRQYAIESDIGFHASYGEETFPPSEILAVIQDFFRTEIRLENFSPAQLEIILKHD 189 Query: 186 EELKKAFYEI---LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 + KK I E + + + L+ + S L E++ Sbjct: 190 PDQKKLLRAIQSGYEFEELPTFQQIYQQFLEGMQNLQRTYSISSSLLMEDFQEQA 244 >gi|145635681|ref|ZP_01791377.1| ATP-dependent DNA helicase rep [Haemophilus influenzae PittAA] gi|145267076|gb|EDK07084.1| ATP-dependent DNA helicase rep [Haemophilus influenzae PittAA] Length = 671 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 61/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T S V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAIEYVTGSCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------EQSKGLLVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S+ + DE L++E L ++ + L++ I Sbjct: 84 FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|213864699|ref|ZP_03386818.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 549 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 >gi|42520776|ref|NP_966691.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410516|gb|AAS14625.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila melanogaster] Length = 638 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 43/168 (25%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 ++ + L++ +Q ++ + A AG+GKT + R+ ++ A+ +L + Sbjct: 1 MNDYLSLLN--PEQQSAVTNIDGPVLILAGAGTGKTRTITSRIAHIIRNGHAYSDEILAV 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RVLE+ Sbjct: 59 TFTNKAANEMVSRVLELTGT---------------------------------------- 78 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T HA I++ + +F I + ++I+ Sbjct: 79 NIPWLGTFHAIAAKILRLHAEIVGLNPNFTIIGVDDQLQVIKNIINEI 126 >gi|303231325|ref|ZP_07318060.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6] gi|302514005|gb|EFL56012.1| UvrD/REP helicase [Veillonella atypica ACS-049-V-Sch6] Length = 861 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 79/216 (36%), Gaps = 50/216 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 +Q + + R+ + A+AG+GKT+ L RV ++ + +LC+T T AA EM Sbjct: 4 NSEQQRVIDELDRNILLLASAGTGKTNTLAYRVAHIIESGRCEAHQILCMTFTNKAAQEM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ ++ + + + T H+ Sbjct: 64 KSRIEFLVGQPAKAVE--------------------------------------ISTFHS 85 Query: 139 FCEAIM-----QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 FC ++ + L ++ I DEE K+L K + + + + K + Sbjct: 86 FCFYVLQQEGKRDESLYTDV----TIFDEEDCKELYLPYKPRNMRDMNFASLISMVKEYR 141 Query: 194 EILEISNDEDIETLISDI--ISNRTALKLIFFFFSY 227 + E ++ I+ I + + ++ F++Y Sbjct: 142 SVYEFYSESLIDDYKRTIQRLEQEQSKQIEKLFYNY 177 >gi|83816462|ref|YP_444656.1| ATP-dependent DNA helicase [Salinibacter ruber DSM 13855] gi|83757856|gb|ABC45969.1| ATP-dependent DNA helicase [Salinibacter ruber DSM 13855] Length = 712 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 71/209 (33%), Gaps = 45/209 (21%) Query: 13 TIDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 TI+ +Q A+ + + A AG+GKT L+ R+ L+ P ++ LT T Sbjct: 22 TIEYAEALNEQQYAAATAGKGPLLIVAGAGTGKTRTLIYRLAYLVETGTRPQQIVLLTFT 81 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + AA +M+ R + +L K++G Sbjct: 82 RRAANDMTAR-----------ASNLLDGRCEKVRG------------------------- 105 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL--K 189 T HAFC +++Q +F + D + ++ + D E K Sbjct: 106 --GTFHAFCLEVLRQHAEALGFPRNFTVLDAADAADVLSVIRTR---GEYGDGEERFPQK 160 Query: 190 KAFYEILEISNDEDIETLISDIISNRTAL 218 Y + + + D ETL I Sbjct: 161 NTLYSMFSSATNRD-ETLGETITKRYPQF 188 >gi|157413574|ref|YP_001484440.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9215] gi|157388149|gb|ABV50854.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9215] Length = 1208 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 8/164 (4%) Query: 35 WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GK+ L VLR +L P +L L+ TK +E+ ++L Sbjct: 14 LIEASAGTGKSFTLSHIVLRNVLEKKVKPDEILLLSFTKNTCSELRDKILSRFHNLKLYL 73 Query: 94 DEILSAEI-TKIQGKKPNKSDMSKARHLLIT----ILETPGGLKVQTIHAFCEAIMQQFP 148 +I ++ N D K++ +I+ + LKV T HAFC I+ ++ Sbjct: 74 QSHNEIKIDNTLKEWYLNFKDKDKSKEKIISEIDNFINQFYKLKVTTFHAFCNNIIDEYS 133 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 +E +T I + + L ++ + L+ N E+ A Sbjct: 134 IEIGVTQDPYIENNIDN--LYKDVIDNLWIDDFLNLNHEIISAV 175 >gi|254286015|ref|ZP_04960976.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae AM-19226] gi|150423925|gb|EDN15865.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae AM-19226] Length = 1208 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + L+ +++ ++ +D S A LL+ + TIH FC+ ++ Sbjct: 84 RLHD-ARLAFARGASDDPLLRSLLAEFTDHSLAVSLLLNAERQMDEAAIFTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F +L + Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178 >gi|330988759|gb|EGH86862.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. lachrymans str. M301315] Length = 1230 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHL--SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + + ++ L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEIATPDGLIAELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|237801822|ref|ZP_04590283.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024681|gb|EGI04737.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. oryzae str. 1_6] Length = 1230 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 61/161 (37%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + +RL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYVRLVLGHGSEESGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + ++A + ++ L + V TIH+ Sbjct: 75 RIRTRLADAARFFRDEIAAPDGLIAELREQFEVEQWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|332180434|gb|AEE16122.1| UvrD/REP helicase [Treponema brennaborense DSM 12168] Length = 1299 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 80/203 (39%), Gaps = 31/203 (15%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHT 71 T + S+ EQ A R++ V+A AGSGKT +L R L+L P +L LT T Sbjct: 3 TAGIFSKLNEEQTAAVTAARNSVVAAGAGSGKTTVLAGRFAYLVLYRDIPAEKILTLTFT 62 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 K AAAEM R+ + + A+ T +E+ Sbjct: 63 KKAAAEMYARIYRTLKTVAENGSG--------------------DAQRKARTAIESFFKT 102 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 ++QT+ ++ +I++ I F E ++ E A+ L ++ ++ + Sbjct: 103 RIQTLDSYGASIVKLAAHRYGIAPDF----ETDNEACKEAARTQALQFLIEHRSQPALRQ 158 Query: 192 FYEILEISNDEDIETLISDIISN 214 F + E L ++ ++ Sbjct: 159 FLQTTRP------ERLAQELFAD 175 >gi|326629652|gb|EGE35995.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 707 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 40 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 99 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 100 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 122 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 123 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 178 >gi|46143262|ref|ZP_00135577.2| COG1074: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207854|ref|YP_001053079.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae L20] gi|303252613|ref|ZP_07338776.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247370|ref|ZP_07529417.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|126096646|gb|ABN73474.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302648581|gb|EFL78774.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856067|gb|EFM88223.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 1202 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 67/180 (37%), Gaps = 10/180 (5%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 +A + A+AG+GKT + LRLLL A+ +L +T TKAA E+ R+ I Sbjct: 12 NCTALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNI 71 Query: 87 TAWSHLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 A E + + I + +A L + TIH+FC+ Sbjct: 72 KACRRFLQEYDAEKTYDINDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIHSFCQK 131 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 ++ QF ++ + F + L+ + + A E L N+ Sbjct: 132 MLFQFAFDSGM--RFDNDLQPDESDLLRRLSEEVWREMFYPMGLTETAAVAEYLGTPNNA 189 >gi|260881254|ref|ZP_05404011.2| ATP-dependent helicase PcrA [Mitsuokella multacida DSM 20544] gi|260848967|gb|EEX68974.1| ATP-dependent helicase PcrA [Mitsuokella multacida DSM 20544] Length = 745 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 51/166 (30%), Gaps = 41/166 (24%) Query: 12 ETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 E DL++ Q A T V A AGSGKT L R L+ P +LC+T Sbjct: 28 EEQDLLAGLNDAQREAVTTTEGFVRVLAGAGSGKTRALTHRFAYLVEELGILPGNILCVT 87 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ + Sbjct: 88 FTNKAATEMRSRIHALTGDNDTGY------------------------------------ 111 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + T H FC +I+Q+ F + D ++ + + Sbjct: 112 ---INTFHGFCVSILQEDSHAVGYPKSFLVLDNADIDDMLAKIYEE 154 >gi|153213940|ref|ZP_01949136.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 1587] gi|124115593|gb|EAY34413.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 1587] Length = 1208 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + L+ +++ ++ +D + A LL++ + TIH FC+ ++ Sbjct: 84 RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F +L + Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178 >gi|15642318|ref|NP_231951.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586166|ref|ZP_01675957.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 2740-80] gi|153817895|ref|ZP_01970562.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae NCTC 8457] gi|153821518|ref|ZP_01974185.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae B33] gi|227082444|ref|YP_002810995.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae M66-2] gi|229507609|ref|ZP_04397114.1| exodeoxyribonuclease V beta chain [Vibrio cholerae BX 330286] gi|229512195|ref|ZP_04401674.1| exodeoxyribonuclease V beta chain [Vibrio cholerae B33] gi|229519331|ref|ZP_04408774.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC9] gi|229607115|ref|YP_002877763.1| exodeoxyribonuclease V beta chain [Vibrio cholerae MJ-1236] gi|254849444|ref|ZP_05238794.1| exodeoxyribonuclease V [Vibrio cholerae MO10] gi|255746995|ref|ZP_05420940.1| exodeoxyribonuclease V beta chain [Vibrio cholera CIRS 101] gi|262161463|ref|ZP_06030573.1| exodeoxyribonuclease V beta chain [Vibrio cholerae INDRE 91/1] gi|298500312|ref|ZP_07010117.1| exodeoxyribonuclease V, beta subunit [Vibrio cholerae MAK 757] gi|9656886|gb|AAF95464.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549578|gb|EAX59602.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 2740-80] gi|126511603|gb|EAZ74197.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae NCTC 8457] gi|126521011|gb|EAZ78234.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae B33] gi|227010332|gb|ACP06544.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae M66-2] gi|229344020|gb|EEO08995.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC9] gi|229352160|gb|EEO17101.1| exodeoxyribonuclease V beta chain [Vibrio cholerae B33] gi|229355114|gb|EEO20035.1| exodeoxyribonuclease V beta chain [Vibrio cholerae BX 330286] gi|229369770|gb|ACQ60193.1| exodeoxyribonuclease V beta chain [Vibrio cholerae MJ-1236] gi|254845149|gb|EET23563.1| exodeoxyribonuclease V [Vibrio cholerae MO10] gi|255735397|gb|EET90797.1| exodeoxyribonuclease V beta chain [Vibrio cholera CIRS 101] gi|262028774|gb|EEY47428.1| exodeoxyribonuclease V beta chain [Vibrio cholerae INDRE 91/1] gi|297541005|gb|EFH77059.1| exodeoxyribonuclease V, beta subunit [Vibrio cholerae MAK 757] Length = 1208 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + L+ +++ ++ +D + A LL++ + TIH FC+ ++ Sbjct: 84 RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F +L + Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178 >gi|153825966|ref|ZP_01978633.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-2] gi|149740283|gb|EDM54424.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-2] Length = 1208 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + L+ +++ ++ +D + A LL++ + TIH FC+ ++ Sbjct: 84 RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F +L + Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178 >gi|67459079|ref|YP_246703.1| DNA helicase II [Rickettsia felis URRWXCal2] gi|75536488|sp|Q4ULN5|UVRD_RICFE RecName: Full=Probable DNA helicase II homolog gi|67004612|gb|AAY61538.1| DNA helicase II [Rickettsia felis URRWXCal2] Length = 654 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 43/158 (27%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 +Q + A AG+GKT +L R+ ++ N A P +L +T T AA EM Sbjct: 12 NPQQQKAVLHTKGPLLLLAGAGTGKTKVLTSRIANIVHQNLASPQNILAVTFTNKAAKEM 71 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + RV +I + GL + T H+ Sbjct: 72 AERVNSLINCY----------------------------------------GLNIGTFHS 91 Query: 139 FCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKK 174 I++ L + + F I + KL+++ K Sbjct: 92 MAARILRDQIEHLNLGLNNRFTIISHDDQLKLVKDIVK 129 >gi|319775408|ref|YP_004137896.1| DNA helicase and single-stranded DNA-dependent ATPase [Haemophilus influenzae F3047] gi|317449999|emb|CBY86212.1| DNA helicase and single-stranded DNA-dependent ATPase [Haemophilus influenzae F3047] Length = 670 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 61/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T S V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAIEYVTGSCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------EQSKGLLVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S+ + DE L++E L ++ + L++ I Sbjct: 84 FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|307249590|ref|ZP_07531577.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858445|gb|EFM90514.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 1202 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 67/180 (37%), Gaps = 10/180 (5%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 +A + A+AG+GKT + LRLLL A+ +L +T TKAA E+ R+ I Sbjct: 12 NCTALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNI 71 Query: 87 TAWSHLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 A E + + I + +A L + TIH+FC+ Sbjct: 72 KACRRFLQEYDAEKTYDINDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIHSFCQK 131 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 ++ QF ++ + F + L+ + + A E L N+ Sbjct: 132 MLFQFAFDSGM--RFDNDLQPDESDLLRRLSEEVWREMFYPMGLTETAAVAEYLGTPNNA 189 >gi|261884575|ref|ZP_06008614.1| putative recombination protein RecB [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 135 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 3/127 (2%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 +R + A+A SG T L R + L+L + +L LT TK AA EM R+++ Sbjct: 4 SRYLALEASAASGITFALSVRFIALILQGNDIAEILALTFTKKAANEMKSRIIDAFCNLH 63 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 S + E+ KI + +++ + LK+ T +F I++QF L Sbjct: 64 ESSKKNELNELEKILELSAVDILSLRDKYMGNFL---KNELKISTFDSFFTMILRQFSLN 120 Query: 151 ANITSHF 157 I F Sbjct: 121 LGIMPDF 127 >gi|1075208|pir||D64084 helicase (EC 3.6.1.-) rep - Haemophilus influenzae (strain Rd KW20) Length = 698 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 61/187 (32%), Gaps = 42/187 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L+ +Q T V A AGSGKT +++ ++ L+ P + +T T A Sbjct: 28 LMKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKA 87 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV I E GL V Sbjct: 88 AREMKERVAHSIGK-------------------------------------EQSKGLLVS 110 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H I+++ S+ + DE L++E L ++ + L++ Sbjct: 111 TFHTLGFDILKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISV 166 Query: 195 ILEISND 201 I ND Sbjct: 167 ISNWKND 173 >gi|330954206|gb|EGH54466.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae Cit 7] Length = 1230 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + ++A + ++ S L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEIAAPDGLIADLREQFEASLWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|255523029|ref|ZP_05390001.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans P7] gi|255513144|gb|EET89412.1| DNA polymerase III, epsilon subunit [Clostridium carboxidivorans P7] Length = 862 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 40/156 (25%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 +S + ++LL ++ ++ + A+AG+GKT L +RV ++ A PS +LC+T T A Sbjct: 1 MSMNEQQELLINELEKNVILLASAGTGKTETLSKRVANIIDKGKAEPSQILCITFTNKAC 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ R+ I+ A + + V+T Sbjct: 61 KEIRERIEGIVGASAK--------------------------------------DITVKT 82 Query: 136 IHAFCEAIMQQFPLE-ANITSHFAIADEEQSKKLIE 170 H+FC +++Q + ++ + F I DEE ++L++ Sbjct: 83 FHSFCFDVIKQEAKKGTDVFTDFTIFDEEDCRELVK 118 >gi|237748331|ref|ZP_04578811.1| exodeoxyribonuclease V [Oxalobacter formigenes OXCC13] gi|229379693|gb|EEO29784.1| exodeoxyribonuclease V [Oxalobacter formigenes OXCC13] Length = 1246 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 39/170 (22%), Positives = 74/170 (43%), Gaps = 10/170 (5%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVL----EIITA 88 + A+AG+GKT + LRLLL +L +T T+AA AE+ R+ + ++ Sbjct: 18 ILIEASAGTGKTWNIGGLYLRLLLEKQLEVKQILVVTFTRAATAELRDRIRGRIAKALSY 77 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDM-SKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 + + D + ++ G++ + ++ L E+ + TIH+FC+ + Sbjct: 78 LNGVDDLADDTFLLELLGRQLETGNTHAELTSRLQLAFESFDQAAIFTIHSFCQRALATT 137 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 A + F + E ++++ EA + + N L AF LE Sbjct: 138 AFSAGVA--FTVRTETVDEEMVLEAVQDFWRRHIA--NGHLSAAFSAWLE 183 >gi|153828214|ref|ZP_01980881.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 623-39] gi|148876303|gb|EDL74438.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae 623-39] Length = 1208 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + L+ +++ ++ +D + A LL++ + TIH FC+ ++ Sbjct: 84 RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F +L + Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178 >gi|182676893|ref|YP_001831040.1| UvrD/REP helicase [Beijerinckia indica subsp. indica ATCC 9039] gi|182636523|gb|ACB97296.1| UvrD/REP helicase [Beijerinckia indica subsp. indica ATCC 9039] Length = 730 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 70/196 (35%), Gaps = 46/196 (23%) Query: 7 FQEHSETIDLISQ-TKSEQLLASDPTRSAWVSANAGSGKTHIL----VQRVLRLLLANAH 61 + SE +++Q Q+ A+ + V A AG+GKT L V R+ + Sbjct: 55 YAPSSEAFTVLTQGLTPRQIEAASAPGAVVVLAGAGTGKTSTLTCAVVHRIA---VEGLS 111 Query: 62 PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121 S +L +T T AA+EMS R+ + S S Sbjct: 112 ASRILAVTFTNKAASEMSDRIRAALQGGSTPS---------------------------- 143 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 + T H ++ P A + +F I D + S++LI+ +S + Sbjct: 144 ----------WLGTFHGLGARQLRAEPEVAGLRPNFEILDADDSRRLIKRIMQSLNLNTD 193 Query: 182 LDNNEELKKAFYEILE 197 +NE + ++ Sbjct: 194 EQDNESGPEPIKRMIN 209 >gi|315655698|ref|ZP_07908596.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 51333] gi|315489762|gb|EFU79389.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 51333] Length = 1191 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 83/196 (42%), Gaps = 11/196 (5%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 T+ + + + P V A AGSGKT + R++ ++ P +L LT T+ AAAE Sbjct: 25 PTQEQSAVITAPRGQLLVVAGAGSGKTETIANRLVYWVVNAGIVPEAILGLTFTRKAAAE 84 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGK--KPNKSDMSKARHLLITILE---TPGGLK 132 M+ R + ++ L + + T K D+++ R T+++ TP L+ Sbjct: 85 MAARFSLRLDRFASLLESVQERRQTAEVTAVLKAADFDLNQLRQRFDTLVQRGMTPEMLR 144 Query: 133 ----VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 V T ++ ++ +F S F + +++ + +S ++ E Sbjct: 145 HPVSVSTYDSYAGTLLTEFGTLVGRESGFTTITDAARYQIMTDVVQSWTGALGTKREGEN 204 Query: 189 KKAFYE-ILEISNDED 203 + +L ++ND + Sbjct: 205 AENLVNILLSLANDTN 220 >gi|306822220|ref|ZP_07455602.1| UvrD/REP helicase subfamily [Bifidobacterium dentium ATCC 27679] gi|309802289|ref|ZP_07696397.1| UvrD/REP helicase [Bifidobacterium dentium JCVIHMP022] gi|304554602|gb|EFM42507.1| UvrD/REP helicase subfamily [Bifidobacterium dentium ATCC 27679] gi|308221172|gb|EFO77476.1| UvrD/REP helicase [Bifidobacterium dentium JCVIHMP022] Length = 1346 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 61/166 (36%), Gaps = 28/166 (16%) Query: 18 SQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + + P+ V A AGSGKT+ + +R++ L+ P +L LT T+ AA+ Sbjct: 8 TDSPEQAAVVQAPSYADVVVVAGAGSGKTYTMTRRIINLIEQGVSPERILGLTFTRKAAS 67 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV + + A K + + T Sbjct: 68 ELLSRVSAAVVSNQGGRTGSAGAAFLKPE---------------------------ISTY 100 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 AF + I++Q+ L + E + +LI + IM Sbjct: 101 DAFFQTIVRQYGLLVGFDQNTQPLSEAGAMQLIYAMLDKHMDEIMR 146 >gi|209693716|ref|YP_002261644.1| ATP-dependent DNA helicase rep [Aliivibrio salmonicida LFI1238] gi|208007667|emb|CAQ77777.1| ATP-dependent DNA helicase rep [Aliivibrio salmonicida LFI1238] Length = 671 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 43/179 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 + + V A AGSGKT ++ ++ L+ + +T T AA EM Sbjct: 4 NPQQDEAVKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + + ++R LL V T H+ Sbjct: 64 KERVGQTL--------------------------NKQESRGLL-----------VSTFHS 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 I+++ + + F++ D++ L++E L +D +++L + + Sbjct: 87 LGLDIIRREYKILGLKAGFSLFDDQDQLALLKE-----LTEKQIDGDKDLLRQLLSCIS 140 >gi|239787415|emb|CAX83890.1| Exodeoxyribonuclease V, beta subunit [uncultured bacterium] Length = 1228 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 66/162 (40%), Gaps = 18/162 (11%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82 + + A+AG+GKT+ + +RL+L + P +L +T T+AA E+ R+ Sbjct: 17 GNRLIEASAGTGKTYTIALLYVRLVLGHGAGSTGRAPLTPPEILVVTFTRAATRELRERI 76 Query: 83 LEIITAWSHLSDEILSAE------ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 + + + + + ++ P ++ AR L + E V+TI Sbjct: 77 RARLAEAAACFRDAATDAAGWDPLLRALRAAYPPEAWTGCARRLQLAA-EWMDEASVETI 135 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 H +C ++Q+ +++ F + L+ E + Sbjct: 136 HGWCHRMLQEHAFDSDTP--FTRELAADQRALLTEVVRDYWR 175 >gi|310819562|ref|YP_003951920.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1] gi|309392634|gb|ADO70093.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1] Length = 781 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 70/195 (35%), Gaps = 43/195 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L ++ V + AGSGKT ++ +RV L+ + P +L +T T A Sbjct: 16 LEDLNPPQKEAVLHGEGPLLVLSGAGSGKTRVITRRVAHLVKVRRVFPWRILAVTFTNKA 75 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+++++ A +H L V Sbjct: 76 AREMRERLVQLLGAQAH--------------------------------------ELVVS 97 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ I+++ +T F I D+ +++ A + ++ + + ++ + Sbjct: 98 TFHSSAAMILRREAEAVGLTRSFVIYDDGDQLNIVKRAMR----EARVEPSMQPREILHR 153 Query: 195 ILEISNDEDIETLIS 209 I + N + + Sbjct: 154 IDQEKNAARLPDAMQ 168 >gi|260581374|ref|ZP_05849189.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae RdAW] gi|260091969|gb|EEW75917.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae RdAW] Length = 676 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 61/187 (32%), Gaps = 42/187 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L+ +Q T V A AGSGKT +++ ++ L+ P + +T T A Sbjct: 6 LMKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKA 65 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV I E GL V Sbjct: 66 AREMKERVAHSIGK-------------------------------------EQSKGLLVS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H I+++ S+ + DE L++E L ++ + L++ Sbjct: 89 TFHTLGFDILKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISV 144 Query: 195 ILEISND 201 I ND Sbjct: 145 ISNWKND 151 >gi|220931259|ref|YP_002508167.1| UvrD/REP helicase [Halothermothrix orenii H 168] gi|219992569|gb|ACL69172.1| UvrD/REP helicase [Halothermothrix orenii H 168] Length = 1036 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 12/191 (6%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT+ L + LL ++ +T T+ A AE+ R+ E I Sbjct: 4 VLKASAGTGKTYRLSLEYVNSLLRGQSFDEIVVMTFTRKATAEIRERIFEHIEDLLEHGM 63 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF-PLEANI 153 E K + + + +L L + TI +F + +Q + Sbjct: 64 ESKVYNSLKEIYHDISF-NRDNLQKKYKAMLINKDKLHIYTIDSFINRVFKQAIAPYLGV 122 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE---TLISD 210 + I +++++ +++E+ K L +N + + L + + I+ LI Sbjct: 123 -YKYEIVEDDKNTEIVEKVFKEIL------DNPDDFALMEKFLSDNPERKIKEYINLIKS 175 Query: 211 IISNRTALKLI 221 +++NR LI Sbjct: 176 MLNNRWKFLLI 186 >gi|171057030|ref|YP_001789379.1| UvrD/REP helicase [Leptothrix cholodnii SP-6] gi|170774475|gb|ACB32614.1| UvrD/REP helicase [Leptothrix cholodnii SP-6] Length = 687 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 38/156 (24%) Query: 18 SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 S QL A + S V A AGSGKT ++ ++ RLL A P + +T T AA Sbjct: 6 STLNPAQLEAVNHLHSPCLVLAGAGSGKTRVITHKIARLLQAGLKPDQIAAITFTNKAAQ 65 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R +I A + A+HL+ + T Sbjct: 66 EMRERARSLIGARA--------------------------AKHLV-----------IATF 88 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 H+ ++++ + F+I D + ++ +A Sbjct: 89 HSLGVRMLREDGECMGLKPKFSILDADDVLGVLRDA 124 >gi|187735472|ref|YP_001877584.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835] gi|187425524|gb|ACD04803.1| UvrD/REP helicase [Akkermansia muciniphila ATCC BAA-835] Length = 668 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 37/164 (22%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 +++ + S +++ + A AG+GKT + R+ ++ P ++L +T Sbjct: 1 MAKSFSMESLNAAQRKAVQTLQGPVLILAGAGTGKTRTVTCRIAHMVDRGISPKSILAVT 60 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV +++ + AR ++ Sbjct: 61 FTNKAALEMRERVGQMVERKA--------------------------ARQIM-------- 86 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 V T H+ C I+++ ++F I + LI Sbjct: 87 ---VSTFHSLCVRILREDIGRLGYKTNFTIYSGSEQSGLIRRLI 127 >gi|220917224|ref|YP_002492528.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1] gi|219955078|gb|ACL65462.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1] Length = 726 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 42/206 (20%) Query: 11 SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 + ++ +Q+ + V A AGSGKT L RV RL+ P +L LT Sbjct: 14 ARALNYQGLLNDQQIAVVEAGDGPILVIAGAGSGKTRTLTWRVARLVADGVAPEGILLLT 73 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV +E+ + +I G Sbjct: 74 FTNKAAREMLRRV-----------EEVCRVDTRRISG----------------------- 99 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 T H ++++ E ++I D E S+ ++ A ++ + Sbjct: 100 ----GTFHHVAHEVLREHAAELGYQRGYSILDREDSRDVMTAAIAECGLAVGARRFPK-A 154 Query: 190 KAFYEILEISNDEDIETLISDIISNR 215 +++ ++ + +T ++D++++R Sbjct: 155 DVLIDLVSMAVNT--QTPLADVLADR 178 >gi|153004223|ref|YP_001378548.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5] gi|152027796|gb|ABS25564.1| UvrD/REP helicase [Anaeromyxobacter sp. Fw109-5] Length = 1196 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 20/140 (14%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANA-----HPSTLLCLTHTKAAAAEMSHRVLEI 85 VSA AGSGKT LV+ RLL A P+ + +T T+ AA E++ R+ Sbjct: 20 DAPTAVSAGAGSGKTTALVELCARLLSGEALGTPCAPAEIAAITFTEKAAEELAQRLRGA 79 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + + + E S+A + L+ L TIH FC +++ Sbjct: 80 VAERARAACEADPG---------------SEAARAWLERLDGLERLSAGTIHGFCGRLLR 124 Query: 146 QFPLEANITSHFAIADEEQS 165 + EA + FA+ADEE+S Sbjct: 125 EHAPEAGLDPEFAVADEERS 144 >gi|295112231|emb|CBL28981.1| Superfamily I DNA and RNA helicases [Synergistetes bacterium SGP1] Length = 682 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 45/171 (26%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 ++ ++ +S + E + D + A AGSGKT +L +V L+ A P + +T Sbjct: 4 NDILERLSPRQREAVTYVD--GPLLILAGAGSGKTRVLTHKVAWLIAEGLARPWEITAVT 61 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV ++ + Sbjct: 62 FTNKAAGEMRERVSALVPDGA--------------------------------------D 83 Query: 130 GLKVQTIHAFCEAIMQQFP----LEANITSHFAIADEEQSKKLIEEAKKST 176 + V T HAF + + P + + FA+ D S+ L+ + + Sbjct: 84 KVWVSTFHAFGLRFLFRNPEAVERLTGLRTGFAVLDRGDSRSLVGQIMERL 134 >gi|150020672|ref|YP_001306026.1| UvrD/REP helicase [Thermosipho melanesiensis BI429] gi|149793193|gb|ABR30641.1| UvrD/REP helicase [Thermosipho melanesiensis BI429] Length = 630 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 61/164 (37%), Gaps = 39/164 (23%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 DL + EQ A + + V A GSGKT ++ ++ L+ + P+ ++ +T TKA Sbjct: 4 DLKLKLDEEQYKAVVESSGKTLVIAGPGSGKTRVITYKIAHLIDSGIKPNEIMLVTFTKA 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R + + G+ Sbjct: 64 AAREMLQRAKVVSKS--------------------------------------NLNGITA 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 T H C ++++ + S+F I D E +K L+E + + Sbjct: 86 GTFHHVCNLFLRRYGRLIGLKSNFTILDSEDAKDLMESTRSQLI 129 >gi|58696814|ref|ZP_00372342.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila simulans] gi|225630630|ref|YP_002727421.1| DNA helicase II [Wolbachia sp. wRi] gi|58536984|gb|EAL60139.1| helicase II - UvrD/PcrA [Wolbachia endosymbiont of Drosophila simulans] gi|225592611|gb|ACN95630.1| DNA helicase II [Wolbachia sp. wRi] Length = 638 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 55/168 (32%), Gaps = 43/168 (25%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 ++ + L++ +Q ++ + A AG+GKT + R+ ++ A+ +L + Sbjct: 1 MNDYLSLLN--PEQQSAVTNIDGPVLILAGAGTGKTRTITSRIAHIIRNGHAYSDEILAV 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RVLE+ Sbjct: 59 TFTNKAANEMVSRVLELTGT---------------------------------------- 78 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T HA I++ + +F I + ++I+ Sbjct: 79 NIPWLGTFHAIAAKILRLHAEIVGLNPNFTIIGVDDQLQVIKNIINEI 126 >gi|262404646|ref|ZP_06081201.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC586] gi|262349678|gb|EEY98816.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC586] Length = 1208 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + L+ +++ ++ +D + A LL++ + TIH FC+ ++ Sbjct: 84 RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F +L + Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178 >gi|298345279|ref|YP_003717966.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063] gi|298235340|gb|ADI66472.1| UvrD/REP helicase [Mobiluncus curtisii ATCC 43063] Length = 1191 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 83/196 (42%), Gaps = 11/196 (5%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 T+ + + + P V A AGSGKT + R++ ++ P +L LT T+ AAAE Sbjct: 25 PTQEQSAVITAPRGQLLVVAGAGSGKTETIANRLVYWVVNAGIVPEAILGLTFTRKAAAE 84 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGK--KPNKSDMSKARHLLITILE---TPGGLK 132 M+ R + ++ L + + T K D+++ R T+++ TP L+ Sbjct: 85 MAARFSLRLDRFASLLESVQERRQTAEVTAVLKAADFDLNQLRQRFDTLVQRGMTPEMLR 144 Query: 133 ----VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 V T ++ ++ +F S F + +++ + +S ++ E Sbjct: 145 HPVSVSTYDSYAGTLLTEFGTLVGRESGFTTITDAARYQIMTDVVQSWTGALGTKREGEN 204 Query: 189 KKAFYE-ILEISNDED 203 + +L ++ND + Sbjct: 205 AENLVNILLSLANDTN 220 >gi|229524317|ref|ZP_04413722.1| exodeoxyribonuclease V beta chain [Vibrio cholerae bv. albensis VL426] gi|229337898|gb|EEO02915.1| exodeoxyribonuclease V beta chain [Vibrio cholerae bv. albensis VL426] Length = 1208 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + L+ +++ ++ +D + A LL++ + TIH FC+ ++ Sbjct: 84 RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F +L + Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178 >gi|197364702|ref|YP_002144339.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197096179|emb|CAR61775.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 674 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 >gi|21223553|ref|NP_629332.1| ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)] gi|9714472|emb|CAC01314.1| putative ATP-dependent DNA helicase [Streptomyces coelicolor A3(2)] Length = 1222 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 32/197 (16%) Query: 3 YHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AH 61 + ++ E + I T + P + A AGSGKT ++ RV+ L+ Sbjct: 55 HITDPEQLKELL-GIPFTPEQTACIVAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVA 113 Query: 62 PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLL 121 P +L LT T AA E++ RV + +++ + Sbjct: 114 PEQVLGLTFTNKAAGELAERVRTALIRAGVTDPDVIDPD--------------------- 152 Query: 122 ITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIM 181 PG + T HAF ++ L + + + +L + Sbjct: 153 ----HPPGEPAISTYHAFAGRLLTDHGLRLGLEPTSRLLADATRYQLAARVLRE-----A 203 Query: 182 LDNNEELKKAFYEILEI 198 L ++F +++ Sbjct: 204 PGPYPALTRSFADLVSD 220 >gi|295836625|ref|ZP_06823558.1| UvrD/Rep family helicase [Streptomyces sp. SPB74] gi|197699603|gb|EDY46536.1| UvrD/Rep family helicase [Streptomyces sp. SPB74] Length = 1221 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 79/235 (33%), Gaps = 36/235 (15%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74 I T + + P + A AGSGKT ++ RV+ L+ A P +L LT T A Sbjct: 107 GIPFTPEQLHCVTAPPAPHVIVAGAGSGKTTVMAARVVWLVGTGAVAPEQVLGLTFTNKA 166 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAE++ RV + A ++ G+ + Sbjct: 167 AAELADRVRRSLVRAGFSDPGAPPAPGAELPGEPL-----------------------IS 203 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+F ++ L + + + +L + L + F + Sbjct: 204 TYHSFAGRLLDDHGLRLGLEPGSRLLADASRFQLAARVLRE-----APGPYPALTRGFSD 258 Query: 195 ILEI---SNDEDIETLISDIISNRTALKLIFFF----FSYLWRRKIIEKSLWSIA 242 ++ + E E L+ +R +L+ S RK+ E + +A Sbjct: 259 LVSDLLALDGELSEHLVDPAALSRYDEELLRTLAGARLSNDQLRKVPEAAAARLA 313 >gi|58578906|ref|YP_197118.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden] gi|58417532|emb|CAI26736.1| DNA helicase II [Ehrlichia ruminantium str. Welgevonden] Length = 639 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 57/174 (32%), Gaps = 42/174 (24%) Query: 15 DLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D I+ +Q ++ + A AG+GKT + R+ +L N A PS +L +T T Sbjct: 3 DYITSLNEDQKKGVTNINGPILILAGAGTGKTRTMTSRIAYVLNNNFALPSQILAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ E L + Sbjct: 63 KAANEMLSRINE----------------------------------------LTCASNIW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + T HA I++Q + S F I + ++I+ D + Sbjct: 83 LGTFHAIATKILRQHAEAVGLKSDFTIIGTDDQLQVIKTIVNDMHPEYASDAYK 136 >gi|229513960|ref|ZP_04403422.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TMA 21] gi|229349141|gb|EEO14098.1| exodeoxyribonuclease V beta chain [Vibrio cholerae TMA 21] Length = 1208 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + L+ +++ ++ +D + A LL++ + TIH FC+ ++ Sbjct: 84 RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F +L + Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178 >gi|330723317|gb|AEC45687.1| ATP-dependent helicase PcrA [Mycoplasma hyorhinis MCLD] Length = 751 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 85/224 (37%), Gaps = 47/224 (20%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTK 72 D++S + Q A + + A AG+GKT +L +++ L+ A +L LT T Sbjct: 12 DILSGLNTNQKAAVLENEHHLRIIAGAGTGKTSVLTKKIAYLIAAKITTAKKILALTFTN 71 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV +I A + K Sbjct: 72 KAANEMKERVKNVIGADA--------------------------------------NETK 93 Query: 133 VQTIHAFCEAIMQ---QFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 + T H+ C I++ Q + N+ +F I DE KK++++ + S+ + Sbjct: 94 IFTFHSLCNLILKIESQQFKKIKEFENLDKNFNIIDERDQKKILKDVYEKLQFSLSNEEI 153 Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLW 229 +KA I + N E I N T KL+ + +Y++ Sbjct: 154 PNFRKAIDFISYVKNKELTFEQIQANAQNSTEKKLVKIYKNYVY 197 >gi|307133008|ref|YP_003885024.1| ATP-dependent DNA helicase Rep [Dickeya dadantii 3937] gi|306530537|gb|ADN00468.1| ATP-dependent DNA helicase Rep [Dickeya dadantii 3937] Length = 674 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 73/207 (35%), Gaps = 43/207 (20%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ Q++ L+ + +T T AA EM Sbjct: 4 NPSQQHAVEFVTGPCLVLAGAGSGKTRVITQKIAHLIRGCGYQARHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + GL + T H Sbjct: 64 KERVAQTLGRQETR-------------------------------------GLLIATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + S+F++ D++ L++E L + L N+++L + L Sbjct: 87 LGLEIIKREYAALGMKSNFSLFDDQDQLALLKE-----LTELWLQNDKDLLQQLVSALSN 141 Query: 199 SNDEDIETLISDIISNRTALKLIFFFF 225 ++ I+ + ++ +L + Sbjct: 142 WKNDLIDPAQAAALARSERDRLFAHCY 168 >gi|62182388|ref|YP_218805.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62130021|gb|AAX67724.1| rep helicase, a single-stranded DNA dependent ATPase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716881|gb|EFZ08452.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 707 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 40 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 99 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 100 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 122 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 123 DIIKREYAALGMKSNFSLFDDSDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 178 >gi|315122506|ref|YP_004062995.1| DNA helicase II [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495908|gb|ADR52507.1| DNA helicase II [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 681 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 44/163 (26%) Query: 15 DLISQTKSEQLLASD--PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHT 71 + + +Q+ A + A AG+GKT +L+ R+L L+ P S +L +T T Sbjct: 29 NYLEGLNPQQVHAITFTDKYPLLILAGAGTGKTTVLIARMLHLIYQKKIPASKILAMTFT 88 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 A EM +R + + G P Sbjct: 89 NQAIQEMKNR-------------------LACLSGHIP---------------------- 107 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 ++QT H+F +I++Q + + F I D S+ +I+E K Sbjct: 108 QIQTFHSFSASILRQHGNVVGLPTDFTILDSGDSRTIIKEILK 150 >gi|257095814|ref|YP_003169455.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048338|gb|ACV37526.1| UvrD/REP helicase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 661 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 57/164 (34%), Gaps = 40/164 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 + L + + E + D V A AGSGKT ++ +++ L+ + PS + +T T Sbjct: 1 MSLPNPPQREAIRYLD--GPLLVLAGAGSGKTRVITEKIAYLIESCGFSPSNIAAITFTN 58 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++ GL Sbjct: 59 KAAREMQERVTRLLAGRPAK-------------------------------------GLT 81 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T HA I+++ +F+I D + ++ E S Sbjct: 82 ISTFHALGVRILREEAKALGYKPNFSILDASDTFAIVSELAGSV 125 >gi|16767188|ref|NP_462803.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161617030|ref|YP_001590995.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553318|ref|ZP_02347068.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994608|ref|ZP_02575699.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234233|ref|ZP_02659291.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168244964|ref|ZP_02669896.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263196|ref|ZP_02685169.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168467671|ref|ZP_02701508.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822967|ref|ZP_02834967.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194447607|ref|YP_002047933.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194468767|ref|ZP_03074751.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197251744|ref|YP_002148842.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264134|ref|ZP_03164208.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198245972|ref|YP_002217850.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388093|ref|ZP_03214705.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207859124|ref|YP_002245775.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238912922|ref|ZP_04656759.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|17865672|sp|Q9L6S1|REP_SALTY RecName: Full=ATP-dependent DNA helicase rep gi|6960284|gb|AAF33474.1| 96% identity with E. coli ATP-dependent DNA helicase (REP) (SP:P09980); contains similarity to Pfam family PF00580 (UvrD/REP helicase), score=817.3, E=5.5e-242, N=1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422480|gb|AAL22762.1| rep helicase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161366394|gb|ABX70162.1| hypothetical protein SPAB_04858 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194405911|gb|ACF66130.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455131|gb|EDX43970.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195629985|gb|EDX48645.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197215447|gb|ACH52844.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242389|gb|EDY25009.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197940488|gb|ACH77821.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605191|gb|EDZ03736.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205322218|gb|EDZ10057.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327553|gb|EDZ14317.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331806|gb|EDZ18570.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336232|gb|EDZ22996.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340705|gb|EDZ27469.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348144|gb|EDZ34775.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710927|emb|CAR35293.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261249041|emb|CBG26901.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301160433|emb|CBW19962.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915036|dbj|BAJ39010.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225438|gb|EFX50495.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322612996|gb|EFY09947.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617416|gb|EFY14316.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625592|gb|EFY22414.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627015|gb|EFY23808.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631269|gb|EFY28032.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638302|gb|EFY35001.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642848|gb|EFY39434.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646996|gb|EFY43498.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650384|gb|EFY46797.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656326|gb|EFY52620.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657551|gb|EFY53821.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665962|gb|EFY62143.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666701|gb|EFY62878.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671056|gb|EFY67186.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679237|gb|EFY75289.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681641|gb|EFY77668.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686032|gb|EFY82020.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192658|gb|EFZ77886.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197835|gb|EFZ82966.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203724|gb|EFZ88745.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205401|gb|EFZ90375.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210772|gb|EFZ95648.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215938|gb|EGA00671.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221431|gb|EGA05849.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227331|gb|EGA11498.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231736|gb|EGA15847.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236151|gb|EGA20228.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239612|gb|EGA23660.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244292|gb|EGA28300.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249611|gb|EGA33523.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250297|gb|EGA34183.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256504|gb|EGA40235.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259798|gb|EGA43431.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265206|gb|EGA48704.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268365|gb|EGA51837.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 674 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 >gi|87120740|ref|ZP_01076633.1| ATP-dependent DNA helicase Rep [Marinomonas sp. MED121] gi|86163968|gb|EAQ65240.1| ATP-dependent DNA helicase Rep [Marinomonas sp. MED121] Length = 682 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 39/171 (22%) Query: 17 ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 +S+ QL A V A AGSGKT ++ ++ L+ + ++ +T T A Sbjct: 12 MSKLNDRQLDAVKRIDGPLLVLAGAGSGKTSVITTKIAYLIQECGYKATNIVAVTFTNKA 71 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV+ +++ + GLK+ Sbjct: 72 AREMKERVVSMLSK-------------------------------------DESRGLKIS 94 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 T H I+++ +A + F + D + S LI+E + N Sbjct: 95 TFHNLGLTILRKEYAKAGLKQGFTLFDSQDSLTLIKEILDKEFNEQTDEAN 145 >gi|332107681|gb|EGJ08905.1| UvrD/REP helicase [Rubrivivax benzoatilyticus JA2] Length = 675 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 53/154 (34%), Gaps = 38/154 (24%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 QL A V A AGSGKT ++V ++ RLL A P + +T T AAAEM Sbjct: 8 LNPAQLAAVHHLEGPCLVLAGAGSGKTRVIVHKIARLLQAGLEPRQIAAITFTNKAAAEM 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R +I+ + L + T H+ Sbjct: 68 RERAKQIVGGRAAKD-------------------------------------LAISTFHS 90 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 +++ + F+I D + ++ EA Sbjct: 91 LGVRMLKTDGSRLGLKEQFSIFDSDDVLGVLREA 124 >gi|304373063|ref|YP_003856272.1| ATP-dependent helicase PcrA [Mycoplasma hyorhinis HUB-1] gi|304309254|gb|ADM21734.1| ATP-dependent helicase PcrA [Mycoplasma hyorhinis HUB-1] Length = 754 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 85/224 (37%), Gaps = 47/224 (20%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTK 72 D++S + Q A + + A AG+GKT +L +++ L+ A +L LT T Sbjct: 15 DILSGLNTNQKAAVLENEHHLRIIAGAGTGKTSVLTKKIAYLIAAKITTAKKILALTFTN 74 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV +I A + K Sbjct: 75 KAANEMKERVKNVIGADA--------------------------------------NETK 96 Query: 133 VQTIHAFCEAIMQ---QFPLEA----NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 + T H+ C I++ Q + N+ +F I DE KK++++ + S+ + Sbjct: 97 IFTFHSLCNLILKIESQQFKKIKEFENLDKNFNIIDERDQKKILKDVYEKLQFSLSNEEI 156 Query: 186 EELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLW 229 +KA I + N E I N T KL+ + +Y++ Sbjct: 157 PNFRKAIDFISYVKNKELTFEQIQANAQNSTEKKLVKIYKNYVY 200 >gi|241953371|ref|XP_002419407.1| ATP-dependent DNA helicase, putative [Candida dubliniensis CD36] gi|223642747|emb|CAX43001.1| ATP-dependent DNA helicase, putative [Candida dubliniensis CD36] Length = 859 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 84/211 (39%), Gaps = 38/211 (18%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPST 64 S Q + ++ ++ + + + A R + A G+GKT +L+ RV LL+ N P Sbjct: 4 SNQVLGKILESLNANQRKAVTAPFNGR-LQIIAGPGTGKTKVLISRVAYLLIAENIRPDN 62 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 L+ T TK AA EM R+ +++ D+++ Sbjct: 63 LIVTTFTKRAANEMIERLTKLVEGTDVNIDKLI--------------------------- 95 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 + T H+ C I++++ ++ + IADE ++++ + ++ Sbjct: 96 --------IGTFHSICYRIIRKYGKLIDLE-DYTIADERDKSQILKTVLTNLSGEEVVTL 146 Query: 185 NEELKKAFYEILEISNDEDIETLISDIISNR 215 N + A ++ +E+ L +IS + Sbjct: 147 NSFSEVALQKLRSHKANENYYGLDLAVISKK 177 >gi|145642218|ref|ZP_01797785.1| ATP-dependent DNA helicase rep [Haemophilus influenzae R3021] gi|145273078|gb|EDK12957.1| ATP-dependent DNA helicase rep [Haemophilus influenzae 22.4-21] Length = 670 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 43/186 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------EQSKGLLVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S+ + DE L++E L +++L++ I Sbjct: 84 FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLKE-----DKDLRELISVI 138 Query: 196 LEISND 201 ND Sbjct: 139 SNWKND 144 >gi|296453651|ref|YP_003660794.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301] gi|296183082|gb|ADG99963.1| UvrD/REP helicase [Bifidobacterium longum subsp. longum JDM301] Length = 1340 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 26/184 (14%) Query: 18 SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + + P V A AGSGKT + QR++ L+ P +L LT T+ AA Sbjct: 5 TPSAEQAAIIDAPVNADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAG 64 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV + S ++ ++ + T Sbjct: 65 ELLERVSAAVAGDMAGSTTATVSDRAFLKPA-------------------------IFTY 99 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 AF + I++Q+ L + + +L E S + ++ +L Sbjct: 100 DAFFQTIVRQYGLLVGFDQNTQPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVL 159 Query: 197 EISN 200 +S+ Sbjct: 160 ALSD 163 >gi|260596007|ref|YP_003208578.1| ATP-dependent DNA helicase Rep [Cronobacter turicensis z3032] gi|260215184|emb|CBA27013.1| ATP-dependent DNA helicase rep [Cronobacter turicensis z3032] Length = 673 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 65/183 (35%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++Q T V A AGSGKT ++ ++ L+ + +T T AA EM Sbjct: 4 NPAQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR GL + T H Sbjct: 64 KERVAQTMGR--------------------------KEAR-----------GLMISTFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + + S+F++ D+ LI+E + + ++ L++ I Sbjct: 87 LGLEIIKREYVALGMKSNFSLFDDTDQMALIKELTEGLVE----NDKVLLQQLISTISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|330971986|gb|EGH72052.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. aceris str. M302273PT] Length = 1230 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + + + + ++ S L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEIPSPDGLIAELREQFEASLWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|171920710|ref|ZP_02695904.2| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185179010|ref|ZP_02964760.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024022|ref|ZP_02996781.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518328|ref|ZP_03003841.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524317|ref|ZP_03004355.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867968|ref|ZP_03079965.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273561|ref|ZP_03206097.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554036|ref|YP_002284945.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550706|ref|ZP_03771655.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551585|ref|ZP_03772531.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903451|gb|EDT49740.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209099|gb|EDU06142.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019050|gb|EDU57090.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998009|gb|EDU67106.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660157|gb|EDX53537.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660364|gb|EDX53624.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198250081|gb|EDY74861.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541537|gb|ACI59766.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379400|gb|EEH01765.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379860|gb|EEH02222.1| ATP-dependent DNA helicase PcrA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 743 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 55/164 (33%), Gaps = 41/164 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 ID + ++ + V A AG+GKT +L R+ L+ + HPS +L T T Sbjct: 5 IDYSRLNQEQKEAVTADLGPQLVIAGAGTGKTSVLTLRIAHLITEKHIHPSRILGFTFTN 64 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV + I Sbjct: 65 KAADEMKERVGKTIGVSIPYL--------------------------------------- 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ C I+QQ N ++ I D + + L++E Sbjct: 86 -STFHSMCVKILQQDIHYLNYHNNIKIIDADDQEVLLKEIFDQL 128 >gi|86158232|ref|YP_465017.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C] gi|85774743|gb|ABC81580.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C] Length = 725 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 42/206 (20%) Query: 11 SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 + ++ +Q+ + V A AGSGKT L RV RL+ P +L LT Sbjct: 14 ARALNYQGLLNDQQIAVVEAGDGPILVIAGAGSGKTRTLTWRVARLVADGVAPEGILLLT 73 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV +E+ + +I G Sbjct: 74 FTNKAAREMLRRV-----------EEVCRVDTRRISG----------------------- 99 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 T H ++++ E ++I D E S+ ++ A ++ + Sbjct: 100 ----GTFHHVAHEVLREHAAELGYQRGYSILDREDSRDVMTAAIAECGLAVGARRFPK-A 154 Query: 190 KAFYEILEISNDEDIETLISDIISNR 215 +++ ++ + +T ++D++++R Sbjct: 155 DVLIDLVSMAVNT--QTPLADVLADR 178 >gi|260583198|ref|ZP_05850977.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae NT127] gi|260093755|gb|EEW77664.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae NT127] Length = 677 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 62/187 (33%), Gaps = 42/187 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L+ +Q T V A AGSGKT +++ ++ L+ P + +T T A Sbjct: 6 LMKLNSQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIGKCGYSPKQIAAVTFTNKA 65 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV I E GL V Sbjct: 66 AREMKERVAHSIGK-------------------------------------EQSKGLLVS 88 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H I+++ S+ + DE+ L++E L ++ + L++ Sbjct: 89 TFHTLGFDIIKREYKALGFKSNMTLFDEQDQFALLKELTADVLK----EDKDLLRELISV 144 Query: 195 ILEISND 201 I ND Sbjct: 145 ISNWKND 151 >gi|165975830|ref|YP_001651423.1| exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875931|gb|ABY68979.1| exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 1202 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 67/180 (37%), Gaps = 10/180 (5%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 +A + A+AG+GKT + LRLLL A+ +L +T TKAA E+ R+ I Sbjct: 12 NCTALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNI 71 Query: 87 TAWSHLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 A E + + I + +A L + TIH+FC+ Sbjct: 72 KACRRFLQEYDAEKTYDINDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIHSFCQK 131 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 ++ QF ++ + F + L+ + + A E L N+ Sbjct: 132 MLFQFAFDSGM--RFDNDLQPDESDLLRRLSEEVWREMFYPMGLTETAAVAEYLGTPNNA 189 >gi|153801076|ref|ZP_01955662.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-3] gi|124123430|gb|EAY42173.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae MZO-3] Length = 1208 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + L+ +++ ++ +D + A LL++ + TIH FC+ ++ Sbjct: 84 RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F +L + Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178 >gi|254448414|ref|ZP_05061875.1| ATP-dependent DNA helicase rep [gamma proteobacterium HTCC5015] gi|198262027|gb|EDY86311.1| ATP-dependent DNA helicase rep [gamma proteobacterium HTCC5015] Length = 671 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 62/185 (33%), Gaps = 43/185 (23%) Query: 19 QTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76 Q +Q A+ V A AGSGKT ++ +++ RL+ P + +T T AA Sbjct: 2 QLNPQQHEATTYCAGHVLVLAGAGSGKTRVITEKIARLIGREGYEPQQIFAVTFTNKAAR 61 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ + +E GL + T Sbjct: 62 EMLERIHLQLG-------------------------------------IEASRGLSISTF 84 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H I++Q F I D S ++ E L N + A ++I Sbjct: 85 HTLGLHIIRQEHELLGYKRGFTIFDSADSSAVLRE----LLRDGNEGFNGDEDSARWQIS 140 Query: 197 EISND 201 ++ ND Sbjct: 141 QLKND 145 >gi|194443787|ref|YP_002043150.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194402450|gb|ACF62672.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 674 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 >gi|204930185|ref|ZP_03221162.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320589|gb|EDZ05791.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 674 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 >gi|229847430|ref|ZP_04467530.1| ATP-dependent DNA helicase [Haemophilus influenzae 7P49H1] gi|229809668|gb|EEP45394.1| ATP-dependent DNA helicase [Haemophilus influenzae 7P49H1] Length = 671 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 61/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T S V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVTGSCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------EQSKGLLVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S+ + DE L++E L ++ + L++ I Sbjct: 84 FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|197122458|ref|YP_002134409.1| UvrD/REP helicase [Anaeromyxobacter sp. K] gi|196172307|gb|ACG73280.1| UvrD/REP helicase [Anaeromyxobacter sp. K] Length = 726 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 42/206 (20%) Query: 11 SETIDLISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 + ++ +Q+ + V A AGSGKT L RV RL+ P +L LT Sbjct: 14 ARALNYQGLLNDQQIAVVEAGDGPILVIAGAGSGKTRTLTWRVARLVADGVAPEGILLLT 73 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV +E+ + +I G Sbjct: 74 FTNKAAREMLRRV-----------EEVCRVDTRRISG----------------------- 99 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 T H ++++ E ++I D E S+ ++ A ++ + Sbjct: 100 ----GTFHHVAHEVLREHAAELGYQRGYSILDREDSRDVMTAAIAECGLAVGARRFPK-A 154 Query: 190 KAFYEILEISNDEDIETLISDIISNR 215 +++ ++ + +T ++D++++R Sbjct: 155 DVLIDLVSMAVNT--QTPLADVVADR 178 >gi|56415773|ref|YP_152848.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|56130030|gb|AAV79536.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] Length = 674 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 >gi|54310114|ref|YP_131134.1| putative exodeoxyribonuclease V [Photobacterium profundum SS9] gi|46914553|emb|CAG21332.1| putative exodeoxyribonuclease V [Photobacterium profundum SS9] Length = 1227 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 14/148 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + + +L +T T+AA AE+ R+ Sbjct: 43 LIEASAGTGKTFTIASLYLRLLLGHGNAETRHASELTVDQILVVTFTEAATAELRDRIRA 102 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I S + I D A +L+ + TIH FC+ ++ Sbjct: 103 RIHDAQIAFRRGFSNDPV-IAPLLTAIRDHKAAAQILLNAERQMDEAAIYTIHGFCQRML 161 Query: 145 QQFPLEAN--ITSHFAIADEEQSKKLIE 170 Q E+ + F + DE Q K L+ Sbjct: 162 TQNAFESGSRFNNEF-VTDESQLKSLVA 188 >gi|271502415|ref|YP_003335441.1| ATP-dependent DNA helicase Rep [Dickeya dadantii Ech586] gi|270345970|gb|ACZ78735.1| ATP-dependent DNA helicase Rep [Dickeya dadantii Ech586] Length = 674 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 73/207 (35%), Gaps = 43/207 (20%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ Q++ L+ + +T T AA EM Sbjct: 4 NPSQQHAVEFVTGPCLVLAGAGSGKTRVITQKIAHLIRGCGYQARHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + GL + T H Sbjct: 64 KERVAQTLGRKETR-------------------------------------GLLIATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + S+F++ D++ L++E L + L N+++L + L Sbjct: 87 LGLEIIKREYAALGMKSNFSLFDDQDQLALLKE-----LTELWLQNDKDLLQQLVSALSN 141 Query: 199 SNDEDIETLISDIISNRTALKLIFFFF 225 ++ I+ + ++ +L + Sbjct: 142 WKNDLIDPAQAAALARSERDRLFAHCY 168 >gi|115372354|ref|ZP_01459663.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1] gi|115370567|gb|EAU69493.1| ATP-dependent DNA helicase PcrA [Stigmatella aurantiaca DW4/3-1] Length = 774 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 70/195 (35%), Gaps = 43/195 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 L ++ V + AGSGKT ++ +RV L+ + P +L +T T A Sbjct: 9 LEDLNPPQKEAVLHGEGPLLVLSGAGSGKTRVITRRVAHLVKVRRVFPWRILAVTFTNKA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+++++ A +H L V Sbjct: 69 AREMRERLVQLLGAQAH--------------------------------------ELVVS 90 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ I+++ +T F I D+ +++ A + ++ + + ++ + Sbjct: 91 TFHSSAAMILRREAEAVGLTRSFVIYDDGDQLNIVKRAMR----EARVEPSMQPREILHR 146 Query: 195 ILEISNDEDIETLIS 209 I + N + + Sbjct: 147 IDQEKNAARLPDAMQ 161 >gi|66043948|ref|YP_233789.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. syringae B728a] gi|63254655|gb|AAY35751.1| Exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. syringae B728a] Length = 1230 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQCGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + + + + ++ S L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEIPSPDGLIAELREQFEASLWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|121726748|ref|ZP_01679966.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V52] gi|121630782|gb|EAX63166.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae V52] Length = 1208 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + L+ +++ ++ +D + A LL++ + TIH FC+ ++ Sbjct: 84 RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F +L + Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178 >gi|296127434|ref|YP_003634686.1| Exodeoxyribonuclease V [Brachyspira murdochii DSM 12563] gi|296019250|gb|ADG72487.1| Exodeoxyribonuclease V [Brachyspira murdochii DSM 12563] Length = 1124 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 82/209 (39%), Gaps = 24/209 (11%) Query: 20 TKSEQLLASD---PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 +Q + +V+A+AG+GKT + + ++LL S+++ +T TKAAA Sbjct: 5 LNKQQEDIINCFFDNGICFVNASAGTGKTSTITELYIKLLENREKVSSIVVITFTKAAAN 64 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ + + + + + IL K+ TI Sbjct: 65 EMLLRIRLKVRNKISFVN---------------TAKEKDYWQKVYKDILTN---AKISTI 106 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 +F +I + L + + +I E + + E K L + + E + Y I Sbjct: 107 DSFANSIAMENALSLAMPPNASIL--EDNSDIKETLKDEILNVLNEVSYSETIRTIYRIY 164 Query: 197 EISNDEDI-ETLISDIISNRTALKLIFFF 224 + +D + ++S ++ + LK I F Sbjct: 165 TEESKDDFADKILSFLLKIKPRLKTIDEF 193 >gi|310827141|ref|YP_003959498.1| hypothetical protein ELI_1549 [Eubacterium limosum KIST612] gi|308738875|gb|ADO36535.1| hypothetical protein ELI_1549 [Eubacterium limosum KIST612] Length = 1065 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 44/158 (27%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEM 78 +Q R+ V A G+GKT LV R+L LL P+ + +T T AAAEM Sbjct: 464 NAEQQEAVITARRAIAVIAGPGTGKTKTLVSRILHLLNERRVKPTEITAVTFTNKAAAEM 523 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +++ S AR + + T H+ Sbjct: 524 RERLEKVLGKRS--------------------------ARQV-----------NIGTFHS 546 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 C ++++ F +AD ++ + EE + Sbjct: 547 LCHKLLKEH------RGGFTLADAFETLETAEETIRHF 578 >gi|251787802|ref|YP_003002523.1| ATP-dependent DNA helicase Rep [Dickeya zeae Ech1591] gi|247536423|gb|ACT05044.1| ATP-dependent DNA helicase Rep [Dickeya zeae Ech1591] Length = 674 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 72/202 (35%), Gaps = 45/202 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ Q++ L+ + +T T AA EM Sbjct: 4 NPSQQHAVEFVTGPCLVLAGAGSGKTRVITQKIAHLIRGCGYQARHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + GL + T H Sbjct: 64 KERVAQTLGRQETR-------------------------------------GLLIATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + S+F++ D++ L++E L + L+N+++L + L Sbjct: 87 LGLEIIKREYAALGMKSNFSLFDDQDQLALLKE-----LTELWLENDKDLLQQLVSALSN 141 Query: 199 SNDEDIE--TLISDIISNRTAL 218 ++ I+ + S R L Sbjct: 142 WKNDLIDPAQAAAQARSERDRL 163 >gi|205354517|ref|YP_002228318.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205274298|emb|CAR39319.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 674 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 >gi|156935891|ref|YP_001439807.1| ATP-dependent DNA helicase Rep [Cronobacter sakazakii ATCC BAA-894] gi|156534145|gb|ABU78971.1| hypothetical protein ESA_03779 [Cronobacter sakazakii ATCC BAA-894] Length = 673 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 64/183 (34%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++Q T V A AGSGKT ++ ++ L+ + +T T AA EM Sbjct: 4 NPAQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR GL + T H Sbjct: 64 KERVAQTLGR--------------------------KEAR-----------GLMISTFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + S+F++ D+ LI+E + + ++ L++ I Sbjct: 87 LGLEIIKREYAALGMKSNFSLFDDTDQMALIKELTEGLVE----NDKVLLQQLISTISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|226358112|ref|YP_002787851.1| ATP-dependent nuclease subunit A (AddA),; UvrD/REP helicase,; ATP-dependent exoDNAse (Exonuclease V) beta subunit (RecB) [Deinococcus deserti VCD115] gi|226319755|gb|ACO47749.1| putative ATP-dependent nuclease subunit A (AddA),; putative UvrD/REP helicase,; putative ATP-dependent exoDNAse (Exonuclease V) beta subunit (RecB) [Deinococcus deserti VCD115] Length = 114 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 25/133 (18%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 D T ++ P S +SA AGSGKT +L +R+L L+ P ++ +T T+ Sbjct: 7 LQDAAGFTPAQAQAIFSPG-SVAISAGAGSGKTRVLAERILNLVQLGVDPGQIVAVTFTE 65 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AAAAE+ R+ + A + + L + ++ Sbjct: 66 AAAAELRERITRFVEARAEAQGGE------------------------WLGALASLPLMQ 101 Query: 133 VQTIHAFCEAIMQ 145 V TIH C + + Sbjct: 102 VSTIHGLCGRVAR 114 >gi|33242131|ref|NP_877072.1| hypothetical protein CpB0800 [Chlamydophila pneumoniae TW-183] gi|33236641|gb|AAP98729.1| UvrD [Chlamydophila pneumoniae TW-183] Length = 639 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 37/160 (23%) Query: 17 ISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 IS+ Q A + P V A AG+GKT ++ R+L L+ P +L +T T AA Sbjct: 4 ISELNEAQRKAVTAPLNPVLVLAGAGAGKTRVVTYRILHLINQGIAPREILAVTFTNKAA 63 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ R++ + + + V T Sbjct: 64 RELKERIVNQCASTNEFDVPM------------------------------------VCT 87 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 H+ I+++ N ++F I D+ ++KLI+ A + Sbjct: 88 FHSLGVFILRRSINLLNRENNFTIYDQSDAEKLIKHALQQ 127 >gi|145637780|ref|ZP_01793430.1| ATP-dependent DNA helicase [Haemophilus influenzae PittHH] gi|145269025|gb|EDK08978.1| ATP-dependent DNA helicase [Haemophilus influenzae PittHH] Length = 671 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 61/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T S V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVTGSCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------EQSKGLLVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S+ + DE L++E L ++ + L++ I Sbjct: 84 FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|322690607|ref|YP_004220177.1| DNA helicase [Bifidobacterium longum subsp. longum JCM 1217] gi|320455463|dbj|BAJ66085.1| DNA helicase [Bifidobacterium longum subsp. longum JCM 1217] Length = 1343 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 26/184 (14%) Query: 18 SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + + P V A AGSGKT + QR++ L+ P +L LT T+ AA Sbjct: 5 TPSAEQAAIIDAPVDADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAG 64 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV + S ++ ++ + T Sbjct: 65 ELLERVSAAVAGDMAGSTTATVSDRAFLKPA-------------------------IFTY 99 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 AF + I++Q+ L + + +L E S + ++ +L Sbjct: 100 DAFFQTIVRQYGLLVGFDQNTQPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVL 159 Query: 197 EISN 200 +S+ Sbjct: 160 ALSD 163 >gi|328884882|emb|CCA58121.1| ATP-dependent DNA helicase [Streptomyces venezuelae ATCC 10712] Length = 919 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 62/182 (34%), Gaps = 31/182 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 I T + + P V A AGSGKT ++ RV+ L+ P +L LT T A Sbjct: 26 GIPFTPEQTACITAPLAPQVVVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 85 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E++ RV + +++ + E PG ++ Sbjct: 86 AGELAERVRTALVRAGVTDPDVIDPD-------------------------EPPGEPRIS 120 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HAF ++ L + + + +L + L ++F Sbjct: 121 TYHAFAGRLLTDHGLRIGLEPTSRLLADATRYQLAARVLRE-----APGPYPALTRSFTT 175 Query: 195 IL 196 ++ Sbjct: 176 LI 177 >gi|320178069|gb|EFW53049.1| ATP-dependent DNA helicase Rep [Shigella boydii ATCC 9905] Length = 673 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 67/198 (33%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + +F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKVNFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + + I R + Sbjct: 146 LKTPSQAAASAIGERDRI 163 >gi|160895970|ref|YP_001561552.1| exodeoxyribonuclease V subunit beta [Delftia acidovorans SPH-1] gi|160361554|gb|ABX33167.1| exodeoxyribonuclease V, beta subunit [Delftia acidovorans SPH-1] Length = 1274 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 75/202 (37%), Gaps = 25/202 (12%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH----------------PSTLLCLTHTKAAA 75 S + A+AG+GKT + LRL+L + P +L +T T+AA Sbjct: 24 GSRLIEASAGTGKTWTIAALYLRLVLGHGEGSLDGISSTAFERPLMPPDILVMTFTRAAT 83 Query: 76 AEMSHRVLEIITAW-----SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 E+S R+ + + A + ++ P + +A L E Sbjct: 84 RELSDRIRKRLIEAVQCFRGEAEPAPHDAFLHALREAYPEGAARERAAWRLAMAAECMDD 143 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + TI A+C+ ++++ ++ + F E + EA + ++EL Sbjct: 144 AAIHTIDAWCQRMLREHAFDSG--NLFDETLEPDESQRQTEAAQDYWRQQCYPLSDELLD 201 Query: 191 AFYEILEISND--EDIETLISD 210 +I +D+ L+ + Sbjct: 202 EVLKIWPHVGALVDDMRALLRE 223 >gi|294506408|ref|YP_003570466.1| ATP-dependent DNA helicase [Salinibacter ruber M8] gi|294342736|emb|CBH23514.1| ATP-dependent DNA helicase [Salinibacter ruber M8] Length = 712 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 70/209 (33%), Gaps = 45/209 (21%) Query: 13 TIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 TI+ +Q A+ + A AG+GKT L+ R+ L+ P ++ LT T Sbjct: 22 TIEYAEALNEQQYAAATAGEGPLLIVAGAGTGKTRTLIYRLAYLVETGTRPQQIVLLTFT 81 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + AA +M+ R + +L K++G Sbjct: 82 RRAANDMTAR-----------ASNLLDGRCEKVRG------------------------- 105 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL--K 189 T HAFC +++Q +F + D + ++ + D E K Sbjct: 106 --GTFHAFCLEVLRQHAEALGFPRNFTVLDAADAADVLSVIRTR---GEYGDGEERFPQK 160 Query: 190 KAFYEILEISNDEDIETLISDIISNRTAL 218 Y + + + D ETL I Sbjct: 161 NTLYSMFSSATNRD-ETLGETITKRYPQF 188 >gi|237803037|ref|YP_002888231.1| DNA helicase [Chlamydia trachomatis B/Jali20/OT] gi|231274271|emb|CAX11066.1| DNA helicase [Chlamydia trachomatis B/Jali20/OT] Length = 634 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 38/163 (23%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 L S+ + Q+ A + P + V A AG+GKT ++ R+L L+ + P +L +T T Sbjct: 2 LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILYLIEESRLDPKQILAITFTNK 61 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA E+ RV + + V Sbjct: 62 AANELKERVQSQCRELGYSDVPM------------------------------------V 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I++ + S+F I D+ S+KLI++ + Sbjct: 86 STFHSLSVYILRCSIHLLDRQSNFVIYDQSDSEKLIKQCLRKL 128 >gi|213692896|ref|YP_002323482.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524357|gb|ACJ53104.1| UvrD/REP helicase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459071|dbj|BAJ69692.1| DNA helicase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 1343 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 26/184 (14%) Query: 18 SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + + P V A AGSGKT + QR++ L+ P +L LT T+ AA Sbjct: 5 TPSAEQAAIIDAPVNADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAG 64 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV + S ++ ++ + T Sbjct: 65 ELLERVSAAVAGDMAGSTTATVSDRAFLKPA-------------------------IFTY 99 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 AF + I++Q+ L + + +L E S + ++ +L Sbjct: 100 DAFFQTIVRQYGLLVGFDQNTQPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVL 159 Query: 197 EISN 200 +S+ Sbjct: 160 ALSD 163 >gi|182436134|ref|YP_001823853.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464650|dbj|BAG19170.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 1162 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 31/184 (16%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T A Sbjct: 16 GIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 75 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E++ RV + + A +++ + PG + Sbjct: 76 AGELAERVRKALIAAGVTDPDVIDPD-------------------------NPPGEPTIS 110 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HAF ++ + L + + + +L + + L ++F Sbjct: 111 TYHAFAGRLLTEHGLRIGLEPSTRLLADATRYQLAAKVLRE-----APGPYPALTRSFST 165 Query: 195 ILEI 198 ++ Sbjct: 166 LVSD 169 >gi|15618681|ref|NP_224967.1| DNA helicase [Chlamydophila pneumoniae CWL029] gi|15836305|ref|NP_300829.1| DNA helicase [Chlamydophila pneumoniae J138] gi|16752269|ref|NP_445637.1| ATP-dependent helicase PcrA [Chlamydophila pneumoniae AR39] gi|4377080|gb|AAD18910.1| DNA Helicase [Chlamydophila pneumoniae CWL029] gi|7190013|gb|AAF38869.1| ATP-dependent helicase PcrA [Chlamydophila pneumoniae AR39] gi|8979145|dbj|BAA98980.1| DNA helicase [Chlamydophila pneumoniae J138] Length = 639 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 37/160 (23%) Query: 17 ISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 IS+ Q A + P V A AG+GKT ++ R+L L+ P +L +T T AA Sbjct: 4 ISELNEAQRKAVTAPLNPVLVLAGAGAGKTRVVTYRILHLINQGIAPREILAVTFTNKAA 63 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ R++ + + + V T Sbjct: 64 RELKERIVNQCASTNEFDVPM------------------------------------VCT 87 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 H+ I+++ N ++F I D+ ++KLI+ A + Sbjct: 88 FHSLGVFILRRSINLLNRENNFTIYDQSDAEKLIKHALQQ 127 >gi|134108923|ref|XP_776576.1| hypothetical protein CNBC0690 [Cryptococcus neoformans var. neoformans B-3501A] gi|50259256|gb|EAL21929.1| hypothetical protein CNBC0690 [Cryptococcus neoformans var. neoformans B-3501A] Length = 1089 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 40/163 (24%) Query: 16 LISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 ++ QL A + P+ + A GSGKT +L RV L+ + P+ ++ +T T Sbjct: 13 YLASLNQAQLKAVTASPSVPLQILAGPGSGKTRVLTCRVAYLVQHHKYSPNEIVAVTFTN 72 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 +A EM R+ +++ + L Sbjct: 73 KSANEMRKRLQKLLGD-------------------------------------KQADQLV 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + T HA C ++++ N++++F IAD E KK++ KS Sbjct: 96 LGTFHATCVKYLRRYGKLINLSNNFVIADAEDCKKIMSGILKS 138 >gi|325265844|ref|ZP_08132530.1| ATP-dependent DNA helicase Rep [Kingella denitrificans ATCC 33394] gi|324982482|gb|EGC18108.1| ATP-dependent DNA helicase Rep [Kingella denitrificans ATCC 33394] Length = 684 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 38/158 (24%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q +V A AGSGKT +++++++ ++ P + +T T AA Sbjct: 20 MKLNPPQQEAVEYLGGPLFVLAGAGSGKTRVIIEKIVHMITRCGYKPYHIAAITFTNKAA 79 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + E GL + T Sbjct: 80 NEMQERIAHRLGK-------------------------------------EQTRGLTIST 102 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 H+ I+++ +F++ D S+K++ E Sbjct: 103 FHSLGMRILREDAPSVGYKRNFSVLDASDSQKILTEIL 140 >gi|320088329|emb|CBY98089.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 674 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 >gi|291615695|ref|YP_003518437.1| Rep [Pantoea ananatis LMG 20103] gi|291150725|gb|ADD75309.1| Rep [Pantoea ananatis LMG 20103] gi|327395960|dbj|BAK13382.1| ATP-dependent DNA helicase Rep [Pantoea ananatis AJ13355] Length = 702 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 65/183 (35%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ + +T T A+ EM Sbjct: 33 NSSQQRAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKASREM 92 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR GL + T H Sbjct: 93 KERVAQTLGR--------------------------KEAR-----------GLMISTFHT 115 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + + S+F++ D++ L+++ L ++ L++ I Sbjct: 116 LGLEIIKREYVALGMKSNFSLFDDQDQMALLKDLTSEWLE----EDKTLLQQLISTISNW 171 Query: 199 SND 201 ND Sbjct: 172 KND 174 >gi|16762217|ref|NP_457834.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143706|ref|NP_807048.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213051683|ref|ZP_03344561.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213621483|ref|ZP_03374266.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648366|ref|ZP_03378419.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|25290776|pir||AI0922 ATP-dependent DNA helicase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504521|emb|CAD09403.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139341|gb|AAO70908.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 674 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 >gi|330827758|ref|YP_004390710.1| ATP-dependent DNA helicase Rep [Aeromonas veronii B565] gi|328802894|gb|AEB48093.1| ATP-dependent DNA helicase Rep [Aeromonas veronii B565] Length = 670 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 69/186 (37%), Gaps = 44/186 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 ++ ++E + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 3 LNPNQNEAVKYV--SGPCLVLAGAGSGKTRVITNKIAYLVQQCGYSARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + +AR GL V T Sbjct: 61 REMKERVGQTLGR--------------------------KEAR-----------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ N+ ++F++ D+ L++E + L ++ ++L +I Sbjct: 84 FHTLGLDIIRREHKSLNLKANFSLFDDTDQLALLKELTEDELD----NDKDKLSALISQI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|294655436|ref|XP_457572.2| DEHA2B14410p [Debaryomyces hansenii CBS767] gi|199429955|emb|CAG85583.2| DEHA2B14410p [Debaryomyces hansenii] Length = 934 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 39/193 (20%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTH 70 ++ ++ + + ++A R + A G+GKT +L+ RV LL+ P ++ T Sbjct: 14 RVLEGLNAKQKQAVVAPSVER-LQIIAGPGTGKTKVLISRVAYLLIKEKLSPQCIIVTTF 72 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 TK AA EM R+ E++ D+IL Sbjct: 73 TKKAANEMIERLGELLKDTPIKVDKIL--------------------------------- 99 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + T H+ C I++ + + I+ + IADE SK+++EE L+ L EL Sbjct: 100 --IGTFHSICYRIIKIYGKKIAIS-DYNIADERDSKQILEEMIMK-LSETDLKYISELPD 155 Query: 191 AFYEILEISNDED 203 EI + + ++D Sbjct: 156 RQTEIFKSNKEDD 168 >gi|254520983|ref|ZP_05133038.1| exodeoxyribonuclease V, beta subunit [Stenotrophomonas sp. SKA14] gi|219718574|gb|EED37099.1| exodeoxyribonuclease V, beta subunit [Stenotrophomonas sp. SKA14] Length = 1226 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 17/175 (9%) Query: 20 TKSEQLLASDPTRSA------WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 + Q +A DP + + A+AG+GKT L RL++ +L +T T Sbjct: 7 DEESQRMAGDPYLTLPLQGIRLIEASAGTGKTFTLATLFTRLVVEQGLRIGQILAVTFTD 66 Query: 73 AAAAEMSHRVLEIITAWSHLSD------EILSAEITKIQGKKPNKSDMSKARHLLITILE 126 AA E+ R+ E + + L D E +T+ ++ + A L + Sbjct: 67 AATQELRKRIRERLALAARLVDLEPAEGEAPDVRLTREVLQRHLQGGTESAATLKRRLQV 126 Query: 127 TPGG---LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 + TIH FC ++++ LE+ T ++L+EE Sbjct: 127 AADEIDLASIFTIHGFCTRVLREHALESGHTFDPPELLASD-RELLEELAADLWR 180 >gi|225621491|ref|YP_002722750.1| UvrD/REP helicase [Brachyspira hyodysenteriae WA1] gi|225216312|gb|ACN85046.1| UvrD/REP helicase [Brachyspira hyodysenteriae WA1] Length = 1131 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 82/196 (41%), Gaps = 14/196 (7%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 ++ + + + + +V+A+AG+GKT + + L+LL S ++ +T TKAAA Sbjct: 5 LNDKQKDIIKCFEDNGLCFVNASAGTGKTSTITEIYLKLLENKEKVSNIVVITFTKAAAN 64 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ + + DEI + K +K D+ K + K+ TI Sbjct: 65 EMLFRIRSKVR---NKIDEIKNTNDEKSIKEKKYWQDVYK---------DILTSAKISTI 112 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 +AF +I + + +I + +I E S + E K L + + E+ + Y I Sbjct: 113 NAFANSIAMENAMYLSIPPNMSIL--EDSIDIQETLKSEILNILRQSKHAEIIRTLYRIS 170 Query: 197 EISNDEDIETLISDII 212 + I + Sbjct: 171 TEDSKNQFAQRILHFL 186 >gi|167947687|ref|ZP_02534761.1| DNA helicase II [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 127 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 3/81 (3%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + S +D +++ + + + A P + + A AGSGKT +LV R+ L+ + P ++L Sbjct: 2 DVSPILDPLNEAQRDAVSA--PVGNLLILAGAGSGKTRVLVHRIAWLMAVEATSPWSILA 59 Query: 68 LTHTKAAAAEMSHRVLEIITA 88 +T T AA EM R+ E++ Sbjct: 60 VTFTNKAAKEMRGRIEELMGQ 80 >gi|224585735|ref|YP_002639534.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224470263|gb|ACN48093.1| ATP-dependent DNA helicase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 674 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDSDQVALLKELTEGLIE----DDKVLLQQLISTISNWKND 145 >gi|159039658|ref|YP_001538911.1| UvrD/REP helicase [Salinispora arenicola CNS-205] gi|157918493|gb|ABV99920.1| UvrD/REP helicase [Salinispora arenicola CNS-205] Length = 1162 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 71/179 (39%), Gaps = 32/179 (17%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E ++ + L + T+ + + + P V A AGSGKT + RV+ L+ + HP +L Sbjct: 27 ELAKLLRLPAPTREQAAVIAAPVEPLLVVAGAGSGKTETMAARVVWLVANSYVHPEQVLG 86 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T+ AA E++HRV ++ + +P Sbjct: 87 LTFTRKAAGELAHRVRARLSQLVRRLGRRGRDPQDESLAGEP------------------ 128 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + T H++ ++ + L A + +L+ EA + L +++ N + Sbjct: 129 ----TIATYHSYAGRVVTEHGLRAGYEP---------ATRLLTEASRWQLVDLIVRNYD 174 >gi|256830236|ref|YP_003158964.1| UvrD/REP helicase [Desulfomicrobium baculatum DSM 4028] gi|256579412|gb|ACU90548.1| UvrD/REP helicase [Desulfomicrobium baculatum DSM 4028] Length = 724 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 38/164 (23%) Query: 14 IDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 ID + Q A+ V A AGSGKT +V R+ RL+ + P+ +L LT T+ Sbjct: 3 IDYQNDLNPAQYEAATTLEGPVLVIAGAGSGKTRTVVYRLARLVESGVSPAEILLLTFTR 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 A++EM HR ++ ++ Sbjct: 63 KASSEMLHRAGGLLGHQGLGH-------------------------------------VR 85 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H F ++++Q + D +++++ +AK Sbjct: 86 GGTFHGFAYSLLKQHAGLLGFERGATVMDRSDAEEILSQAKDRL 129 >gi|148826716|ref|YP_001291469.1| ATP-dependent DNA helicase [Haemophilus influenzae PittEE] gi|148716876|gb|ABQ99086.1| ATP-dependent DNA helicase [Haemophilus influenzae PittEE] Length = 671 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 61/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAYLIEKCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------EQSKGLLVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S+ + DE+ L++E L ++ + L++ I Sbjct: 84 FHTLGFDIIKREYKALGFKSNMTLFDEQDQFALLKELTADVLK----EDKDLLRELISVI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|330901566|gb|EGH32985.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. japonica str. M301072PT] Length = 784 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + ++A + ++ S L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEIAAPDGLIADLREQFEASLWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|322688621|ref|YP_004208355.1| DNA helicase [Bifidobacterium longum subsp. infantis 157F] gi|320459957|dbj|BAJ70577.1| DNA helicase [Bifidobacterium longum subsp. infantis 157F] Length = 1343 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 26/184 (14%) Query: 18 SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + + P V A AGSGKT + QR++ L+ P +L LT T+ AA Sbjct: 5 TPSAEQAAIIDAPVDADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAG 64 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV + S ++ ++ + T Sbjct: 65 ELLERVSAAVAGDMAGSTTATVSDRAFLKPA-------------------------IFTY 99 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 AF + I++Q+ L + + +L E S + ++ +L Sbjct: 100 DAFFQTIVRQYGLLVGFDQNTQPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVL 159 Query: 197 EISN 200 +S+ Sbjct: 160 ALSD 163 >gi|160877210|ref|YP_001556526.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS195] gi|160862732|gb|ABX51266.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS195] Length = 685 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + ++ + V A AGSGKT +++ ++ L+ + +T T AA Sbjct: 16 MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIGYLVEKCGYKARNIAAVTFTNKAA 75 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + +AR GL + T Sbjct: 76 REMKERVAQSMGR--------------------------KEAR-----------GLWIST 98 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + F++ D++ + L++E + L D +++L KA Sbjct: 99 FHTLGLEIIKREHKVLGLKPGFSLFDDQDTLALLKELTQDEL-----DEDKDLLKALAST 153 Query: 196 LE 197 + Sbjct: 154 IS 155 >gi|145297194|ref|YP_001140035.1| ATP-dependent DNA helicase Rep [Aeromonas salmonicida subsp. salmonicida A449] gi|142849966|gb|ABO88287.1| ATP-dependent DNA helicase Rep [Aeromonas salmonicida subsp. salmonicida A449] Length = 670 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + ++ + V A AGSGKT ++ ++ L+ + + +T T AA Sbjct: 1 MKLNPNQNEAVKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYNARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + +AR GL V T Sbjct: 61 REMKERVGQTLGR--------------------------KEAR-----------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ N+ ++F++ D+ L++E ++ L ++ ++L +I Sbjct: 84 FHTLGLDIIRREHKSLNLKANFSLFDDTDQLALLKELTEAELD----NDKDKLSALISQI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|239813731|ref|YP_002942641.1| UvrD/REP helicase [Variovorax paradoxus S110] gi|239800308|gb|ACS17375.1| UvrD/REP helicase [Variovorax paradoxus S110] Length = 701 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 59/151 (39%), Gaps = 38/151 (25%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 ++Q + V A AGSGKT ++ ++ RL+ A P + +T T AA+EM R Sbjct: 8 AQQEAVNYLHGPCLVLAGAGSGKTRVITHKIGRLIQAGLEPKRIAAITFTNKAASEMRER 67 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 +I +A+H++ + T HA Sbjct: 68 AKGLIG---------------------------REAKHVV-----------ICTFHALGV 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 +M++ + F+I D + K++++A Sbjct: 90 RMMREDGAVLGLKPAFSILDSDDVTKILKDA 120 >gi|319791429|ref|YP_004153069.1| uvrd/rep helicase [Variovorax paradoxus EPS] gi|315593892|gb|ADU34958.1| UvrD/REP helicase [Variovorax paradoxus EPS] Length = 704 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 38/151 (25%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 ++Q + V A AGSGKT ++ ++ RL+ A P + +T T AAAEM R Sbjct: 8 AQQEAVNYMHGPCLVLAGAGSGKTRVITHKIGRLIQAGLEPKRIAAITFTNKAAAEMRER 67 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 ++I AR ++ V T HA Sbjct: 68 AKDLIG---------------------------RDARKVI-----------VCTFHALGV 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 +M++ + F+I D + K++++A Sbjct: 90 RMMREDGAVLGLKPAFSILDSDDVTKILKDA 120 >gi|291517284|emb|CBK70900.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [Bifidobacterium longum subsp. longum F8] Length = 1343 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 26/184 (14%) Query: 18 SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + + P V A AGSGKT + QR++ L+ P +L LT T+ AA Sbjct: 5 TPSAEQAAIIDAPVDADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAG 64 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV + S ++ ++ + T Sbjct: 65 ELLERVSAAVAGDMAGSTTATVSDRAFLKPA-------------------------IFTY 99 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 AF + I++Q+ L + + +L E S + ++ +L Sbjct: 100 DAFFQTIVRQYGLLVGFDQNTQPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVL 159 Query: 197 EISN 200 +S+ Sbjct: 160 ALSD 163 >gi|32033668|ref|ZP_00133979.1| COG0210: Superfamily I DNA and RNA helicases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207767|ref|YP_001052992.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae L20] gi|126096559|gb|ABN73387.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 672 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 48/228 (21%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNDQQQQAVEYVTGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL + T Sbjct: 61 REMRERVAHSIGK-------------------------------------ENSKGLTIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S + DE L L ++ +N E K + Sbjct: 84 FHTLGFEILKREYKLLGFKSGMTLFDEHDQLAL--------LKHLLPENAAEDKDLLKAL 135 Query: 196 LEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 + ++ + L +++ R + +F F L++ ++ + Sbjct: 136 ISTISNWKNDLLSPEMVLTRVRDERERVFSHFYQLYQNQLKAYNALDF 183 >gi|307260740|ref|ZP_07542429.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869579|gb|EFN01367.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 672 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 48/228 (21%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNDQQQQAVEYVTGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL + T Sbjct: 61 REMRERVAHSIGK-------------------------------------ENSKGLTIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S + DE L L ++ +N E K + Sbjct: 84 FHTLGFEILKREYKLLGFKSGMTLFDEHDQLAL--------LKHLLPENAAEDKDLLKAL 135 Query: 196 LEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 + ++ + L +++ R + +F F L++ ++ + Sbjct: 136 ISTISNWKNDLLSPEMVLTRVRDERERVFSHFYQLYQNQLKAYNALDF 183 >gi|227546375|ref|ZP_03976424.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622378|ref|ZP_04665409.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|227213356|gb|EEI81228.1| superfamily I DNA and RNA helicase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514375|gb|EEQ54242.1| ATP-dependent DNA helicase [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 1343 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 26/184 (14%) Query: 18 SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + + P V A AGSGKT + QR++ L+ P +L LT T+ AA Sbjct: 5 TPSAEQAAIIDAPVDADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAG 64 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV + S ++ ++ + T Sbjct: 65 ELLERVSAAVAGDMAGSTTATVSDRAFLKPA-------------------------IFTY 99 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 AF + I++Q+ L + + +L E S + ++ +L Sbjct: 100 DAFFQTIVRQYGLLVGFDQNTQPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVL 159 Query: 197 EISN 200 +S+ Sbjct: 160 ALSD 163 >gi|197117725|ref|YP_002138152.1| UvrD superfamily ATP-dependent helicase [Geobacter bemidjiensis Bem] gi|197087085|gb|ACH38356.1| ATP-dependent helicase, UvrD superfamily [Geobacter bemidjiensis Bem] Length = 678 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 53/165 (32%), Gaps = 38/165 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +DL + + V A AGSGKT ++ R+ L+L P +L +T T Sbjct: 1 MLDLSRLNPEQLAAVKHTEGALLVLAGAGSGKTGVITYRIAHLILDKKVPPDQVLAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ + G+ Sbjct: 61 NKAAKEMKERVEHLVGR-------------------------------------KQSKGI 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ ++++ +F+I L+ + + Sbjct: 84 VLSTFHSLGVRVLKRDIERLGYKKNFSIYSTADQVGLVRQIVREV 128 >gi|254821918|ref|ZP_05226919.1| hypothetical protein MintA_18442 [Mycobacterium intracellulare ATCC 13950] Length = 400 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 63/162 (38%), Gaps = 24/162 (14%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 E + + L T+ + + + P V A AG+GKT + RV+ L+ A P+ +L Sbjct: 27 SELACALGLFPPTEEQSAVIAAPPGPLVVIAGAGAGKTETMAARVVWLIANGYAEPAQVL 86 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 LT T+ AA ++ RV + + + + + +G Sbjct: 87 GLTFTRKAAGQLLRRVRSRLARLAGVGLGPVGDAAAEPEGAPV----------------- 129 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 + T HAF ++++ + L + + E + +L Sbjct: 130 ------ISTYHAFAGSLLRDYGLLLPVEPDTRLLSETELWQL 165 >gi|320103549|ref|YP_004179140.1| UvrD/REP helicase [Isosphaera pallida ATCC 43644] gi|319750831|gb|ADV62591.1| UvrD/REP helicase [Isosphaera pallida ATCC 43644] Length = 686 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 40/163 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L+ + ++L A+ P + A GSGKT ++ RV L+ P ++L T T+ AA Sbjct: 20 LVGLNEVQRLAAAAPDGVNLILAGPGSGKTRVITHRVAWLIGQGVAPESILLTTFTRRAA 79 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ ++ + + T Sbjct: 80 REMVARLSSLVGPAA--------------------------------------DQVWAGT 101 Query: 136 IHAFCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKKST 176 H ++++ F S+F+I D E + L+ +A Sbjct: 102 FHQIANRLLRRREFAEALGYQSNFSILDAEDALDLVAQAIDEL 144 >gi|23465762|ref|NP_696365.1| ATP-dependent DNA helicase [Bifidobacterium longum NCC2705] gi|23326449|gb|AAN25001.1| widely conserved ATP-dependent DNA helicase; Rep-like protein [Bifidobacterium longum NCC2705] Length = 1343 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 26/184 (14%) Query: 18 SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + + P V A AGSGKT + QR++ L+ P +L LT T+ AA Sbjct: 5 TPSAEQAAIIDAPVDADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAG 64 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV + S ++ ++ + T Sbjct: 65 ELLERVSAAVAGDMAGSTTATVSDRAFLKPA-------------------------IFTY 99 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 AF + I++Q+ L + + +L E S + ++ +L Sbjct: 100 DAFFQTIVRQYGLLVGFDQNTQPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVL 159 Query: 197 EISN 200 +S+ Sbjct: 160 ALSD 163 >gi|303248300|ref|ZP_07334562.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ] gi|302490325|gb|EFL50237.1| UvrD/REP helicase [Desulfovibrio fructosovorans JJ] Length = 1078 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 61/166 (36%), Gaps = 30/166 (18%) Query: 34 AWVSANAGSGKTHILVQRVLRL---------------LLANAHPSTLLCLTHTKAAAAEM 78 V A+AGSGKTH L +R + L L A +L +T T AAAEM Sbjct: 3 IQVKASAGSGKTHALTERFISLALRTARNLPRSCAGSLEAGYALPEILAVTFTNKAAAEM 62 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + D + KAR L +L L ++TI + Sbjct: 63 RERVFTRLKKIALGLDGA-------------DADSRGKARDELEELLVHAERLNIRTIDS 109 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 + + F L+ + F A + +L+ + A + D Sbjct: 110 LLFLLARIFALDLGLRPDFEPAFND--AELLSDVYDRLAARLPEDP 153 >gi|312133222|ref|YP_004000561.1| uvrd3 [Bifidobacterium longum subsp. longum BBMN68] gi|311772423|gb|ADQ01911.1| UvrD3 [Bifidobacterium longum subsp. longum BBMN68] Length = 1343 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 62/180 (34%), Gaps = 26/180 (14%) Query: 22 SEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 + + P V A AGSGKT + QR++ L+ P +L LT T+ AA E+ Sbjct: 9 EQAAIIDAPVDADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAGELLE 68 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 RV + S ++ ++ + T AF Sbjct: 69 RVSAAVAGDMAGSTTATVSDRAFLKPA-------------------------IFTYDAFF 103 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 + I++Q+ L + + +L E S + ++ +L +S+ Sbjct: 104 QTIVRQYGLLVGFDQNTQPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVLALSD 163 >gi|58265500|ref|XP_569906.1| ATP-dependent DNA helicase pcra [Cryptococcus neoformans var. neoformans JEC21] gi|57226138|gb|AAW42599.1| ATP-dependent DNA helicase pcra, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 982 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 40/163 (24%) Query: 16 LISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 ++ QL A + P+ + A GSGKT +L RV L+ + P+ ++ +T T Sbjct: 13 YLASLNQAQLKAVTASPSVPLQILAGPGSGKTRVLTCRVAYLVQHHKYSPNEIVAVTFTN 72 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 +A EM R+ +++ + L Sbjct: 73 KSANEMRKRLQKLLGD-------------------------------------KQADQLV 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + T HA C ++++ N++++F IAD E KK++ KS Sbjct: 96 LGTFHATCVKYLRRYGKLINLSNNFVIADAEDCKKIMSGILKS 138 >gi|238794290|ref|ZP_04637903.1| ATP-dependent DNA helicase rep [Yersinia intermedia ATCC 29909] gi|238726374|gb|EEQ17915.1| ATP-dependent DNA helicase rep [Yersinia intermedia ATCC 29909] Length = 673 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 71/201 (35%), Gaps = 43/201 (21%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ P + +T T AA EM Sbjct: 4 NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR GL + T H Sbjct: 64 KERVAQTLGR--------------------------KEAR-----------GLMIATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + + S+F++ D + L+++ L D+ L++ +I Sbjct: 87 LGLEIIKKEYVALGMKSNFSLFDAQDQLGLLKDLTHKWLE----DDKTLLQQLISQISNW 142 Query: 199 SND-EDIETLISDIISNRTAL 218 ND D + S R L Sbjct: 143 KNDLLDPAGAAAQARSERDKL 163 >gi|317498206|ref|ZP_07956507.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA] gi|316894561|gb|EFV16742.1| UvrD/REP helicase [Lachnospiraceae bacterium 5_1_63FAA] Length = 655 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 54/162 (33%), Gaps = 41/162 (25%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 L+ Q QL A T V A AGSGKT L R L+ P +LC+T T Sbjct: 32 LLCQLNQAQLEAVTSTEGFIRVIAGAGSGKTRALSHRFAFLVNEIGILPGNILCVTFTNK 91 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM HR+ +I + Sbjct: 92 AANEMRHRIHNLIADNDTGY---------------------------------------I 112 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H FC +I+Q+ +F + D + +++ + Sbjct: 113 NTFHGFCVSILQEDSHAIQYPKNFLVLDNQDIDSMLKIIYEE 154 >gi|303252517|ref|ZP_07338680.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247266|ref|ZP_07529315.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648485|gb|EFL78678.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856239|gb|EFM88393.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 672 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 48/228 (21%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNDQQQQAVEYVTGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL + T Sbjct: 61 REMRERVAHSIGK-------------------------------------ENSKGLTIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S + DE L L ++ +N E K + Sbjct: 84 FHTLGFEILKREYKLLGFKSGMTLFDEHDQLAL--------LKHLLPENAAEDKDLLKAL 135 Query: 196 LEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 + ++ + L +++ R + +F F L++ ++ + Sbjct: 136 ISTISNWKNDLLSPEMVLTRVRDERERVFSHFYQLYQNQLKAYNALDF 183 >gi|46191135|ref|ZP_00206689.1| COG0210: Superfamily I DNA and RNA helicases [Bifidobacterium longum DJO10A] gi|189439817|ref|YP_001954898.1| superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A] gi|189428252|gb|ACD98400.1| Superfamily I DNA and RNA helicase [Bifidobacterium longum DJO10A] Length = 1343 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 65/184 (35%), Gaps = 26/184 (14%) Query: 18 SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + + P V A AGSGKT + QR++ L+ P +L LT T+ AA Sbjct: 5 TPSAEQAAIIDAPVDADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAG 64 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV + S ++ + ++ + T Sbjct: 65 ELLERVSAAVAGDMAGSTTATVSDRSFLKPA-------------------------IFTY 99 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 AF + I++Q+ L + + +L E S + ++ +L Sbjct: 100 DAFFQTIVRQYGLLVGFDQNTQPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVL 159 Query: 197 EISN 200 +S+ Sbjct: 160 ALSD 163 >gi|325963968|ref|YP_004241874.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans Sphe3] gi|323470055|gb|ADX73740.1| DNA/RNA helicase, superfamily I [Arthrobacter phenanthrenivorans Sphe3] Length = 1201 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 47/213 (22%), Positives = 80/213 (37%), Gaps = 24/213 (11%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77 T + + S P V A AGSGKT + RV+ L+ P +L +T T+ AA E Sbjct: 48 PTPEQSAIISSPLAPRLVIAGAGSGKTATMADRVVWLVANGWVKPEEVLGVTFTRKAAGE 107 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL--KVQT 135 ++ R+ + A + ++ G+ D L L L KV T Sbjct: 108 LASRIRAKL------------AALQRLAGQDTVSQDQEN--RLFPDGLPGSDALEPKVST 153 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI--MLDNNEELKKAFY 193 H+F I+ + L + + Q+ +L E ++ L KA Sbjct: 154 YHSFASGIVSDYGLRLGVERDVVLLGGAQAWQLASEVVEAYDGEYGHFRAAKSTLVKAVI 213 Query: 194 EIL-----EISNDEDIETLISDIISNRTALKLI 221 ++ + ED+E + +S+ AL + Sbjct: 214 QLAGECAEHLQEPEDVEAWLMARLSDFEALPYL 246 >gi|261211432|ref|ZP_05925720.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC341] gi|260839387|gb|EEX66013.1| exodeoxyribonuclease V beta chain [Vibrio sp. RC341] Length = 1208 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRL++ +AHP +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTYTIAGLYLRLVIGHGCVETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + L+ +++ ++ +D + A LL++ + TIH FC+ ++ Sbjct: 84 RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F +L + Sbjct: 143 TQNAFESG--SRFENEFVTDESRLKAQVVADYWRRQFY 178 >gi|237746116|ref|ZP_04576596.1| ATP-dependent exoDNAse beta subunit [Oxalobacter formigenes HOxBLS] gi|229377467|gb|EEO27558.1| ATP-dependent exoDNAse beta subunit [Oxalobacter formigenes HOxBLS] Length = 1253 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 72/190 (37%), Gaps = 16/190 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEII------- 86 + A+AG+GKT + LRLLL +L +T T+AA E+ R+ I Sbjct: 19 LIEASAGTGKTWNIGGLYLRLLLEKKREVREILVVTFTRAATDELRDRIRSRIGRALAYL 78 Query: 87 -TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + D + + K + +M+ LL ++ + TIH+FC+ + Sbjct: 79 EGRAADTDDGFVEKLLEKRMAAGDDPQEMT---ALLRLAFQSFDQAAIFTIHSFCQRALA 135 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS-IMLDNNEELKKAFYEILEISNDEDI 204 + F++ E +L+ EA + A+ E + D + Sbjct: 136 LSAFSSG--QAFSVKAEADDSELVREAVNDFWRRHVAGGRLSPALSAWLEKKRFTPDR-L 192 Query: 205 ETLISDIISN 214 E L+ ++ Sbjct: 193 EALLRRHLAR 202 >gi|300689860|ref|YP_003750855.1| ATP-dependent DNA helicase [Ralstonia solanacearum PSI07] gi|299076920|emb|CBJ49533.1| ATP-dependent DNA helicase [Ralstonia solanacearum PSI07] Length = 705 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 30/142 (21%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 V A AGSGKT ++ Q++ L+L P + +T T AA EM RV +++ Sbjct: 21 DGPCLVLAGAGSGKTRVITQKIAHLILDKGFEPRNIAAVTFTNKAAKEMQERVAKLMDGK 80 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + + + + L V T H+ I++ Sbjct: 81 TREDGKRIPIK-----------------------------QLTVCTFHSLGVQILRAEAE 111 Query: 150 EANITSHFAIADEEQSKKLIEE 171 + F+I D + +I+E Sbjct: 112 HVGLKPRFSIMDSDDCFGMIQE 133 >gi|241759897|ref|ZP_04757997.1| exodeoxyribonuclease V, beta subunit [Neisseria flavescens SK114] gi|241319905|gb|EER56301.1| exodeoxyribonuclease V, beta subunit [Neisseria flavescens SK114] Length = 561 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 37/203 (18%) Query: 35 WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL- 92 + A+AG+GKT+ + RL+ L +L +T TKAA AE+ R+ + + Sbjct: 19 LIEASAGTGKTYGIAALFTRLIVLEKKDIEKILVVTFTKAATAELKTRLRARLDEVLQVL 78 Query: 93 ---------------------------SDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 D+ L+ I G++ + + L L Sbjct: 79 NEIQTLGGEPEHISDGLNTYYDKEKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKAAL 138 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI--------EEAKKSTL 177 + TIH FC+ +++ + ++D+ + + LI + A +TL Sbjct: 139 SQFDNASIYTIHGFCQRVLRDYAFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATDTTL 198 Query: 178 ASIMLDNNEELKKAFYEILEISN 200 A ++ D ++ EI + Sbjct: 199 AQLVFDRKCTPEEMLAEIKSYTG 221 >gi|33593011|ref|NP_880655.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I] gi|33563386|emb|CAE42260.1| probable ATP-dependent DNA helicase [Bordetella pertussis Tohama I] Length = 697 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 35/168 (20%) Query: 15 DLISQTKSEQLLASD------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 D +++ Q A+ +++ V A AGSGKT+ L RV L+L A P +L L Sbjct: 14 DPLAELNPAQREAAAYGVDAPASQALLVIAGAGSGKTNTLAHRVAHLILHGADPQRMLLL 73 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T ++ AA EM RV ++ L P Sbjct: 74 TFSRRAAQEMERRVGGVLQRVMG-----------------------------LRAGHAAP 104 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ +++ ++ F + D ++ L+ + Sbjct: 105 ALPWAGTFHSVGARLLRDCAPRIGLSEAFTVHDRGDAEDLMGIVRHEL 152 >gi|297202230|ref|ZP_06919627.1| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083] gi|297148066|gb|EDY54287.2| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083] Length = 469 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 35/191 (18%), Positives = 64/191 (33%), Gaps = 31/191 (16%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T A Sbjct: 35 GIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 94 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E++ RV + + +++ + PG + Sbjct: 95 AGELAERVRKALVKAGVTDPDVIDPD-------------------------NPPGEPVIS 129 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HAF ++ L + + + +L + L ++F + Sbjct: 130 TYHAFAGRLLTDHGLRIGLEPTSRLLADATRYQLAARVLRE-----APGPYPALTRSFAD 184 Query: 195 ILEISNDEDIE 205 ++ D E Sbjct: 185 LVSDLLTLDAE 195 >gi|332184092|gb|AEE26346.1| ATP-dependent DNA helicase Rep [Francisella cf. novicida 3523] Length = 671 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 38/161 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74 L + K +Q V A AGSGKT ++++++ L+ +P ++L +T T A Sbjct: 2 LNNLNKQQQQAVKYIATPLLVLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV + D K++ GL + Sbjct: 62 AKEMQERVKSRL--------------------------DKEKSK-----------GLMIS 84 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ +I+++ E +F + D S LI + Sbjct: 85 TFHSLGLSILKKHFSELGYKKNFTLFDSHDSLALIYDIAYD 125 >gi|121605345|ref|YP_982674.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2] gi|120594314|gb|ABM37753.1| UvrD/REP helicase [Polaromonas naphthalenivorans CJ2] Length = 1141 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 38/150 (25%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 ++ A+ + + A G+GKT LVQR+ LL P ++L LT + AA E+S R Sbjct: 203 TQIAAANHRNTAFQLQAGPGTGKTRTLVQRIQSLLTDGVDPMSILVLTFSNKAANELSER 262 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 L + + + + T HAF Sbjct: 263 --------------------------------------LAASNPKAAAAMWIGTFHAFGL 284 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEE 171 I+++F + + + + D + +L+E+ Sbjct: 285 DIVRRFHDKLGLPAGPRLIDRSEGIELLED 314 >gi|311281536|ref|YP_003943767.1| ATP-dependent DNA helicase Rep [Enterobacter cloacae SCF1] gi|308750731|gb|ADO50483.1| ATP-dependent DNA helicase Rep [Enterobacter cloacae SCF1] Length = 673 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 68/198 (34%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VAQTLGR--------------------------QEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 EIIKREFAALGMKSNFSLFDDTDQTALLKELTEGLID----DDKVVLQQLISTISNWKND 145 Query: 202 -EDIETLISDIISNRTAL 218 + + + R + Sbjct: 146 LKTPAQAAAGALGERDRI 163 >gi|85859303|ref|YP_461505.1| exodeoxyribonuclease V subunit beta [Syntrophus aciditrophicus SB] gi|85722394|gb|ABC77337.1| exodeoxyribonuclease V beta chain [Syntrophus aciditrophicus SB] Length = 1230 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 77/185 (41%), Gaps = 7/185 (3%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW--SH 91 + ANAG+GKT+ + LRL++ +A +L +T+T AA E+ R+ ++ + Sbjct: 16 LIEANAGTGKTYAISGLFLRLIVEHALQVGEILVMTYTVAATEELKDRIRCTLSRALEAL 75 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 + + + + AR L T L + TIH FC+ +Q+ E+ Sbjct: 76 GHGRVEDLFLDSFVRRLAEDDRTNSARRRLATALRDFDEAAIFTIHGFCQRTLQENAFES 135 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDI 211 + T + + +S+K+ + + + EL Y + +N + + I Sbjct: 136 HSTFNAELI--TESEKITDLILQDFWRRHFYEAQPELVA--YALETKNNLAGYRSFLRQI 191 Query: 212 ISNRT 216 S+ Sbjct: 192 SSHPD 196 >gi|256421211|ref|YP_003121864.1| exodeoxyribonuclease V [Chitinophaga pinensis DSM 2588] gi|256036119|gb|ACU59663.1| Exodeoxyribonuclease V [Chitinophaga pinensis DSM 2588] Length = 1152 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 14/219 (6%) Query: 26 LASDPTR-SAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVL 83 A+ P + S + A+AG+GKT+ + VLRL+L +L +T TKAA AE+ R+ Sbjct: 12 AATVPLQDSNLIEASAGTGKTYSIAILVLRLVLENGLSIKEILMVTFTKAAVAELEERIR 71 Query: 84 EIITAWSHLSD--EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + +S E I ++ + ++ ++ + L + V TIH+FC+ Sbjct: 72 LFVRTAYKISQGQETRDENIFRLVEEAVERNGLAAVQQQLRDAVLFLDETAVLTIHSFCQ 131 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 + +F E + + + +K LI E + + +LE + Sbjct: 132 KTLNEFAFETDQLFGAEMI--QDTKTLIAEEVQKFWRKYVT-------TLHIRLLEKVWE 182 Query: 202 EDIETLISDIISNRTALKLIFFFF-SYLWRRKIIEKSLW 239 D+ I+ ++ K + + + K E+ W Sbjct: 183 PDMMEGINVALNEHMGGKRYYAYQPGKRYAIKQKEQEEW 221 >gi|237807041|ref|YP_002891481.1| ATP-dependent DNA helicase Rep [Tolumonas auensis DSM 9187] gi|237499302|gb|ACQ91895.1| ATP-dependent DNA helicase Rep [Tolumonas auensis DSM 9187] Length = 676 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 41/184 (22%) Query: 20 TKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 QL A + V A AGSGKT ++ ++ L+ + + +T T AA E Sbjct: 3 LNPRQLDAMHYVSGPCLVLAGAGSGKTRVITAKIAYLIRECSYQARHIFAVTFTNKAARE 62 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV + + +AR GL V T H Sbjct: 63 MKERVAQTLGR--------------------------REAR-----------GLTVSTFH 85 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 + ++++ + ++F++ D+ LI+E ++ + N E L++ I Sbjct: 86 SLGLDLIRREHQHLQLKANFSLFDDTDQMSLIKELTEA--DPELQGNKELLQQLVQTISR 143 Query: 198 ISND 201 ND Sbjct: 144 YKND 147 >gi|89898806|ref|YP_515916.1| ATP-dependent dsDNA/ssDNA exodeoxyribonuclease V beta [Chlamydophila felis Fe/C-56] gi|89332178|dbj|BAE81771.1| ATP-dependent dsDNA/ssDNA exodeoxyribonuclease V beta [Chlamydophila felis Fe/C-56] Length = 1045 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 6/135 (4%) Query: 27 ASDPTRSA----WVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSH 80 +P S ++ A+AG+GKT + Q +LR LL +L +T T AA E+ Sbjct: 6 IFNPQTSIHGKYFLEASAGTGKTFTIEQIILRALLEGSVTRTENILAVTFTNAATNELKL 65 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ + + LS + P D+ + + L T + + TIH FC Sbjct: 66 RIQDNLKRALSQLKSSLSDPSQPLPPYLPEPCDVKQLYMQIRNALATIDRMAIFTIHGFC 125 Query: 141 EAIMQQFPLEANITS 155 ++Q + IT Sbjct: 126 NHVLQLHFPDMQITQ 140 >gi|329939647|ref|ZP_08288948.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045] gi|329301217|gb|EGG45112.1| ATP-dependent DNA helicase [Streptomyces griseoaurantiacus M045] Length = 1244 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 31/184 (16%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 I T + P + A AGSGKT ++ RV+ L+ P +L LT T A Sbjct: 16 GIPFTPEQTACIIAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 75 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E++ RV + + + + + PG + Sbjct: 76 AGELAERVRKALVRAGVTDPDAIDPD-------------------------NPPGEPLIS 110 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HAF ++ L + + + +L + L ++F + Sbjct: 111 TYHAFAGRLLTDHGLRIGLEPTSRLLADATRYQLAARVLRE-----APGPYPALTRSFPD 165 Query: 195 ILEI 198 ++ Sbjct: 166 LVSD 169 >gi|304412235|ref|ZP_07393844.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS183] gi|307306979|ref|ZP_07586719.1| ATP-dependent DNA helicase Rep [Shewanella baltica BA175] gi|304349501|gb|EFM13910.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS183] gi|306910557|gb|EFN40987.1| ATP-dependent DNA helicase Rep [Shewanella baltica BA175] Length = 670 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + ++ + V A AGSGKT +++ ++ L+ + +T T AA Sbjct: 1 MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIGYLVEKCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + +AR GL + T Sbjct: 61 REMKERVAQSMGR--------------------------KEAR-----------GLWIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + F++ D++ + L++E + L D +++L KA Sbjct: 84 FHTLGLEIIKREHKVLGLKPGFSLFDDQDTLALLKELTQDEL-----DEDKDLLKALAST 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|153002493|ref|YP_001368174.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS185] gi|151367111|gb|ABS10111.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS185] Length = 670 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + ++ + V A AGSGKT +++ ++ L+ + +T T AA Sbjct: 1 MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIGYLVEKCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + +AR GL + T Sbjct: 61 REMKERVAQSMGR--------------------------KEAR-----------GLWIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + F++ D++ + L++E + L D +++L KA Sbjct: 84 FHTLGLEIIKREHKVLGLKPGFSLFDDQDTLALLKELTQDEL-----DEDKDLLKALAST 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|167767205|ref|ZP_02439258.1| hypothetical protein CLOSS21_01724 [Clostridium sp. SS2/1] gi|167711180|gb|EDS21759.1| hypothetical protein CLOSS21_01724 [Clostridium sp. SS2/1] Length = 745 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 55/162 (33%), Gaps = 41/162 (25%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 L+ Q +QL A T V A AGSGKT L R L+ P +LC+T T Sbjct: 32 LLCQLNQKQLEAVTSTEGFIRVIAGAGSGKTRALSHRFAFLVNEIGILPGNILCVTFTNK 91 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM HR+ +I + Sbjct: 92 AANEMRHRIHNLIADNDTGY---------------------------------------I 112 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H FC +I+Q+ +F + D + +++ + Sbjct: 113 NTFHGFCVSILQEDSHAVQYPKNFLVLDNQDIDSMLKIIYEE 154 >gi|146313639|ref|YP_001178713.1| ATP-dependent DNA helicase Rep [Enterobacter sp. 638] gi|145320515|gb|ABP62662.1| ATP-dependent DNA helicase Rep [Enterobacter sp. 638] Length = 673 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGRIE----DDKLILQQLISTISNWKND 145 >gi|78484557|ref|YP_390482.1| UvrD/REP helicase [Thiomicrospira crunogena XCL-2] gi|78362843|gb|ABB40808.1| ATP-dependent DNA helicase Rep [Thiomicrospira crunogena XCL-2] Length = 677 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 73/209 (34%), Gaps = 40/209 (19%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 + + A V A AGSGKT ++ +++ L+ + P + LT T A Sbjct: 1 MFGLNDRQLKGVMHIETPALVLAGAGSGKTRVITEKIAYLIRKHDVQPHHIYALTFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +++ + GL V Sbjct: 61 AKEMKERVSKLLKD-------------------------------------DPSKGLNVS 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-KSTLASIMLDNNEELKKAFY 193 T H I++Q S F+I D +K++++E K L+ LD + + Sbjct: 84 TFHNLGLNIIRQEYHALGYKSTFSIMDATDTKQILKELMKKQQLSEEELDGVQWDISNWK 143 Query: 194 EILEISNDEDIETLISDIISNRTALKLIF 222 IS ++ +E ++ R L + Sbjct: 144 N-AHISPEKALEMAEDNLQQARAILYDYY 171 >gi|238759818|ref|ZP_04620975.1| ATP-dependent DNA helicase rep [Yersinia aldovae ATCC 35236] gi|238701961|gb|EEP94521.1| ATP-dependent DNA helicase rep [Yersinia aldovae ATCC 35236] Length = 673 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 73/204 (35%), Gaps = 43/204 (21%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + S+Q T V A AGSGKT ++ ++ L+ P + +T T AA Sbjct: 1 MQLNPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + +AR GL + T Sbjct: 61 REMKERVAQTLGR--------------------------KEAR-----------GLMIAT 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + S+F++ D + L+++ L D+ L++ +I Sbjct: 84 FHTLGLEIIKKEYKALGMKSNFSLFDAQDQLGLLKDLTHKWLE----DDKTLLQQLISQI 139 Query: 196 LEISND-EDIETLISDIISNRTAL 218 ND D + + + S R L Sbjct: 140 SNWKNDLLDPASAAAQVRSERDKL 163 >gi|149189144|ref|ZP_01867432.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio shilonii AK1] gi|148837107|gb|EDL54056.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio shilonii AK1] Length = 1205 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 40/177 (22%), Positives = 67/177 (37%), Gaps = 13/177 (7%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA AE+ R+ Sbjct: 22 LIEASAGTGKTFTIAGLYLRLLLGHGSDQSRHKQPLTVDQILVVTFTEAATAELRDRIRA 81 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I + ++ ++ I+ + +D A L+ V TIH FC+ ++ Sbjct: 82 RIHQ-ARIAFARGDSDDPVIKPLLNDITDHRFAVDTLLQAERQMDEAAVYTIHGFCQRML 140 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 Q E+ S F +L + S EL ++ ND Sbjct: 141 TQNAFESG--SRFNNEFITDESRLKAQVVADFWRSQFYPLGLELASEVRKLWATPND 195 >gi|291447590|ref|ZP_06586980.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998] gi|291350537|gb|EFE77441.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998] Length = 1201 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 31/184 (16%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 I T + P + A AGSGKT ++ RV+ L+ P +L LT T A Sbjct: 26 GIPFTPEQTACIIAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 85 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E++ RV + + A +++ + PG + Sbjct: 86 AGELAERVRKALIAAGVTDPDVIDPD-------------------------NPPGEPTIS 120 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HAF ++ + L + + + +L + + L ++F Sbjct: 121 TYHAFAGRLLTEHGLRIGLEPSTRLLADATRYQLAAKVLRE-----APGPYPALTRSFST 175 Query: 195 ILEI 198 ++ Sbjct: 176 LVSD 179 >gi|161505570|ref|YP_001572682.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866917|gb|ABX23540.1| hypothetical protein SARI_03740 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 674 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 63/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLID----DDKVVLQQLISTISNWKND 145 >gi|126176198|ref|YP_001052347.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS155] gi|217975060|ref|YP_002359811.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS223] gi|125999403|gb|ABN63478.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS155] gi|217500195|gb|ACK48388.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS223] gi|315269414|gb|ADT96267.1| ATP-dependent DNA helicase Rep [Shewanella baltica OS678] Length = 670 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + ++ + V A AGSGKT +++ ++ L+ + +T T AA Sbjct: 1 MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIGYLVEKCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + +AR GL + T Sbjct: 61 REMKERVAQSMGR--------------------------KEAR-----------GLWIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + F++ D++ + L++E + L D +++L KA Sbjct: 84 FHTLGLEIIKREHKVLGLKPGFSLFDDQDTLALLKELTQDEL-----DEDKDLLKALAST 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|237737235|ref|ZP_04567716.1| UvrD/REP helicase [Fusobacterium mortiferum ATCC 9817] gi|229421097|gb|EEO36144.1| UvrD/REP helicase [Fusobacterium mortiferum ATCC 9817] Length = 518 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 83/241 (34%), Gaps = 52/241 (21%) Query: 6 SFQEHSETIDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64 S ID S EQ A V A AGSGKT +V R L+ Sbjct: 53 SLLSKGYKIDYSSLLNEEQKKALLSTEGQYLVIAGAGSGKTRTIVYRTAWLIENGVSEEK 112 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T+ A+ EM R+ I+ E+ + Sbjct: 113 ILMVTFTRKASEEMKERLKNILNV----------EELKTV-------------------- 142 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA------ 178 V T H+FC ++ ++ + + I +E + +K++ + + Sbjct: 143 --------VTTFHSFCARLIFKYKALFEVD-NLNIMEEGEREKILLKIVERFELNKKYKG 193 Query: 179 -----SIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKI 233 + + E+L+ A + +I E I+ +I I S K I + Y +I Sbjct: 194 KFYDIEELSNRLEKLQNARLRLEDIFPKEHIDDIIK-IKSEYRKYKKIKNVYEYDDLVEI 252 Query: 234 I 234 + Sbjct: 253 V 253 >gi|157144411|ref|YP_001451730.1| ATP-dependent DNA helicase Rep [Citrobacter koseri ATCC BAA-895] gi|157081616|gb|ABV11294.1| hypothetical protein CKO_00120 [Citrobacter koseri ATCC BAA-895] Length = 673 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 62/180 (34%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D+ L++E + D+ L++ I ND Sbjct: 90 DIIKREYAALGMKSNFSLFDDTDQVALLKELTDGLIE----DDKVILQQLISTISNWKND 145 >gi|17548006|ref|NP_521408.1| ATP-dependent DNA helicase REP protein [Ralstonia solanacearum GMI1000] gi|17430312|emb|CAD17077.1| probable atp-dependent dna helicase rep protein [Ralstonia solanacearum GMI1000] Length = 705 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 52/142 (36%), Gaps = 30/142 (21%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 V A AGSGKT ++ Q++ L+L P + +T T AA EM RV +++ Sbjct: 21 DGPCLVLAGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDGK 80 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + + + + L V T H+ I++ Sbjct: 81 TREDGKRIPIK-----------------------------QLTVCTFHSLGVQILRAEAE 111 Query: 150 EANITSHFAIADEEQSKKLIEE 171 + F+I D + LI+E Sbjct: 112 HVGLKPRFSIMDSDDCFGLIQE 133 >gi|327484827|gb|AEA79234.1| Exodeoxyribonuclease V beta chain RecB [Vibrio cholerae LMA3894-4] Length = 1208 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + L+ +++ ++ +D + A LL++ + TIH FC+ ++ Sbjct: 84 RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F L + Sbjct: 143 TQNAFESG--SRFENEFVTDESSLKAQVVADYWRRQFY 178 >gi|322834953|ref|YP_004214980.1| ATP-dependent DNA helicase Rep [Rahnella sp. Y9602] gi|321170154|gb|ADW75853.1| ATP-dependent DNA helicase Rep [Rahnella sp. Y9602] Length = 674 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ + +T T AA EM Sbjct: 4 NPSQQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR LL + T H Sbjct: 64 KERVAQTLGR--------------------------KEARGLL-----------IATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + S+F++ D++ L++E + L ++ L++ I Sbjct: 87 LGLEIIKREFAALGMKSNFSLFDDQDQLALLKELSEKWLE----NDKTLLQQLVSTISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|296126522|ref|YP_003633774.1| UvrD/REP helicase [Brachyspira murdochii DSM 12563] gi|296018338|gb|ADG71575.1| UvrD/REP helicase [Brachyspira murdochii DSM 12563] Length = 659 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 39/164 (23%) Query: 14 IDLISQTKSEQLL-ASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D++ Q + + AGSGKT ++ +++ L+ P ++ +T T Sbjct: 1 MDILQNVSEVQREGILHRGSPLLLLSGAGSGKTLVITRKIAYLINELETPPENIIAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ P L Sbjct: 61 NKAAYEMKERVSALVPDIK-------------------------------------PSRL 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 ++T H+ C I+++ S+F I DE +I+ K Sbjct: 84 FIRTFHSACLRILKENAHFLGYKSNFLILDEGDKLSVIKRIMKE 127 >gi|24375807|ref|NP_719850.1| ATP-dependent DNA helicase Rep [Shewanella oneidensis MR-1] gi|24350759|gb|AAN57294.1|AE015866_1 ATP-dependent DNA helicase Rep [Shewanella oneidensis MR-1] Length = 671 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + ++ + V A AGSGKT +++ ++ L+ + + +T T AA Sbjct: 1 MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVQKCGYNARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + +AR GL + T Sbjct: 61 REMKERVAQSMGR--------------------------KEAR-----------GLWIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + F++ D++ + L++E + L +++L KA Sbjct: 84 FHTLGLEIVKREHKVLGLKPGFSLFDDQDTLALLKELTQKELQE-----DKDLLKALAGA 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|297538070|ref|YP_003673839.1| UvrD/REP helicase [Methylotenera sp. 301] gi|297257417|gb|ADI29262.1| UvrD/REP helicase [Methylotenera sp. 301] Length = 677 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 39/176 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKA 73 +++ + Q A V A AGSGKT ++ Q++ L+ A P + +T T Sbjct: 1 MLNSLNAPQRDAVKYLDGPLLVLAGAGSGKTRVITQKISYLIDEAGYSPKEIAAITFTNK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV +++ + GL + Sbjct: 61 AAREMQERVGKLMVG-------------------------------------KNIKGLTI 83 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 T H+ +++ F+I D S K++ + +T ++ ++ Sbjct: 84 ATFHSLGLQMLRAEASLLGYKPQFSILDSSDSFKILADILATTDKQLLRKTQSQIS 139 >gi|330429421|gb|AEC20755.1| DNA helicase [Pusillimonas sp. T7-7] Length = 639 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 62/172 (36%), Gaps = 42/172 (24%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-T 64 S + I+ ++ + + +D + + A GSGKT +L R+ RLL+ + Sbjct: 4 SGNRLNNLIESLTPIQRQASAWND--GAFLLLAGPGSGKTRVLTARIARLLVESLDDRWR 61 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L LT T AA EM R+++I+ Sbjct: 62 ILALTFTNRAADEMRSRIIDIVP------------------------------------- 84 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE-QSKKLIEEAKKS 175 E L + T H+F I++Q I + F I +L+E A Sbjct: 85 -EAEDRLFIGTFHSFAGEILRQNGTLLGIKTDFRIYSTTADRIELLERAMME 135 >gi|319897816|ref|YP_004136013.1| DNA helicase and single-stranded DNA-dependent atpase [Haemophilus influenzae F3031] gi|317433322|emb|CBY81698.1| DNA helicase and single-stranded DNA-dependent ATPase [Haemophilus influenzae F3031] Length = 671 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------EQSKGLLVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S+ + DE L++E L ++ + L++ I Sbjct: 84 FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|317482570|ref|ZP_07941585.1| UvrD/REP helicase [Bifidobacterium sp. 12_1_47BFAA] gi|316915992|gb|EFV37399.1| UvrD/REP helicase [Bifidobacterium sp. 12_1_47BFAA] Length = 1343 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 26/184 (14%) Query: 18 SQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + + P V A AGSGKT + QR++ L+ P +L LT T+ AA Sbjct: 5 TPSAEQAAIIDAPVDADVLVVAGAGSGKTFTMTQRIIALINRGVAPERILGLTFTRKAAG 64 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV + S ++ ++ + T Sbjct: 65 ELLERVSAAVAGDMAGSTTDTVSDRAFLKPA-------------------------IFTY 99 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 AF + I++Q+ L + + +L E S + ++ +L Sbjct: 100 DAFFQTIVRQYGLLVGFDQNTQPLSAAGALQLATEVIDSHMDLAFSEDFGAFSSLANRVL 159 Query: 197 EISN 200 +S+ Sbjct: 160 ALSD 163 >gi|313680462|ref|YP_004058201.1| uvrd/rep helicase [Oceanithermus profundus DSM 14977] gi|313153177|gb|ADR37028.1| UvrD/REP helicase [Oceanithermus profundus DSM 14977] Length = 917 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 13/164 (7%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AG+GKT+ L R L + P L +T T++AAAE+ R+ E + A + + Sbjct: 5 IASAGTGKTYALTSRFTAALAEH-PPYRLAAVTFTRSAAAELKARLRERLLAIAAGRFQP 63 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 AE P ++ + +A L +L G V TIH F +++Q L + Sbjct: 64 SGAE------DVPPEAVVRRAGALATEVL----GATVTTIHGFFAELLRQNALALGLEPD 113 Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 F D +S+++ E ++ + + + ++ L + + + Sbjct: 114 FLRIDASESQQIFAEEARAYV--YLNEEDDALAEVLGRLFAKRS 155 >gi|145631680|ref|ZP_01787443.1| ATP-dependent DNA helicase rep [Haemophilus influenzae R3021] gi|144982703|gb|EDJ90239.1| ATP-dependent DNA helicase rep [Haemophilus influenzae R3021] Length = 671 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------EQSKGLLVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S+ + DE L++E L ++ + L++ I Sbjct: 84 FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|269966191|ref|ZP_06180280.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio alginolyticus 40B] gi|269829106|gb|EEZ83351.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio alginolyticus 40B] Length = 1227 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 11/128 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA AE+ R+ Sbjct: 37 LIEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRA 96 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I S++ IQ D +A +L+ V TIH FC+ ++ Sbjct: 97 RIHDARIAFARGQSSDPV-IQPLLNEFDDHKQAAEILLQAERQMDEAAVYTIHGFCQRML 155 Query: 145 QQFPLEAN 152 Q E+ Sbjct: 156 TQNAFESG 163 >gi|229528683|ref|ZP_04418073.1| exodeoxyribonuclease V beta chain [Vibrio cholerae 12129(1)] gi|229332457|gb|EEN97943.1| exodeoxyribonuclease V beta chain [Vibrio cholerae 12129(1)] Length = 1208 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + L+ +++ ++ +D + A LL++ + TIH FC+ ++ Sbjct: 84 RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F L + Sbjct: 143 TQNAFESG--SRFENEFVTDESSLKAQVVADYWRRQFY 178 >gi|218708138|ref|YP_002415759.1| ATP-dependent DNA helicase rep [Vibrio splendidus LGP32] gi|218321157|emb|CAV17107.1| ATP-dependent DNA helicase rep [Vibrio splendidus LGP32] Length = 672 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQECGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGKGESK-------------------------------------GLIVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E L +D +++L +A Sbjct: 84 FHTMGLTIIRREYKALGLKAGFSLFDDQDQLALLKE-----LTERQIDGDKDLLRALMST 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|239616541|ref|YP_002939863.1| UvrD/REP helicase [Kosmotoga olearia TBF 19.5.1] gi|239505372|gb|ACR78859.1| UvrD/REP helicase [Kosmotoga olearia TBF 19.5.1] Length = 652 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 38/167 (22%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 S + + + A GSGKT ++ ++ L+ + +P +L +T T+AA+ E Sbjct: 18 SLDNEQLNAVLNSKGRTLIVAGPGSGKTRVITFKIAYLVSSGVNPQNILLVTFTRAASRE 77 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M R ++ + SD+ G+ T H Sbjct: 78 MIER------------------------ARRVSGSDLR--------------GMLAGTFH 99 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 C ++++ I+S F I D E SK LI+ K + D Sbjct: 100 HVCNHFLRKYATHLGISSDFTILDREDSKDLIKHCKAQLMEQRGNDG 146 >gi|16272592|ref|NP_438809.1| ATP-dependent DNA helicase [Haemophilus influenzae Rd KW20] gi|1172905|sp|P44804|REP_HAEIN RecName: Full=ATP-dependent DNA helicase rep gi|1573648|gb|AAC22309.1| ATP-dependent DNA helicase (rep) [Haemophilus influenzae Rd KW20] Length = 670 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------EQSKGLLVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S+ + DE L++E L ++ + L++ I Sbjct: 84 FHTLGFDILKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|193217029|ref|YP_002000271.1| ATP-dependent DNA helicase [Mycoplasma arthritidis 158L3-1] gi|193002352|gb|ACF07567.1| ATP-dependent DNA helicase [Mycoplasma arthritidis 158L3-1] Length = 726 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 53/163 (32%), Gaps = 39/163 (23%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 D S + ++ + + A AGSGKT +L ++ L+ N P +L LT + Sbjct: 5 DFDSLNEQQKSAVIFTDGALRIIAGAGSGKTRVLTYKIAYLIENRNVSPGDILALTFSNK 64 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R + + V Sbjct: 65 AANEMRDRAYGALEKTNEYP--------------------------------------TV 86 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ C I++ + + F I DE K++++ Sbjct: 87 STFHSLCARILRSEIHNFDYPNDFQILDESDQKQVLKIVYTEL 129 >gi|238021168|ref|ZP_04601594.1| hypothetical protein GCWU000324_01066 [Kingella oralis ATCC 51147] gi|237868148|gb|EEP69154.1| hypothetical protein GCWU000324_01066 [Kingella oralis ATCC 51147] Length = 666 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 38/158 (24%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q + +V A AGSGKT ++ +++ ++ P + +T T AA Sbjct: 1 MKLNPEQQAAVEYLGGALFVLAGAGSGKTRVITEKIAYMITQAGYKPHHIAAITFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + E GL V T Sbjct: 61 KEMQERVSARLGR-------------------------------------EQTRGLTVCT 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 H+ I+++ +F+I D S ++I E Sbjct: 84 FHSLGMRILREEAQHVGYKKNFSILDASDSARIIGELL 121 >gi|91223408|ref|ZP_01258673.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio alginolyticus 12G01] gi|91191494|gb|EAS77758.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio alginolyticus 12G01] Length = 1227 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 11/128 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA AE+ R+ Sbjct: 37 LIEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRA 96 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I S++ IQ D +A +L+ V TIH FC+ ++ Sbjct: 97 RIHDARIAFARGQSSDPV-IQPLLNEFDDHKQAAEILLQAERQMDEAAVYTIHGFCQRML 155 Query: 145 QQFPLEAN 152 Q E+ Sbjct: 156 TQNAFESG 163 >gi|33600795|ref|NP_888355.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50] gi|33568395|emb|CAE32307.1| probable ATP-dependent DNA helicase [Bordetella bronchiseptica RB50] Length = 697 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 35/168 (20%) Query: 15 DLISQTKSEQLLASD------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 D +++ Q A+ +++ V A AGSGKT+ L RV L+L A P +L L Sbjct: 14 DPLAELNPAQREAAAYGVDAPASQALLVIAGAGSGKTNTLAHRVAHLILHGADPQRMLLL 73 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T ++ AA EM RV ++ L P Sbjct: 74 TFSRRAAQEMERRVGGVLQRVMG-----------------------------LRAGHAAP 104 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ +++ ++ F + D ++ L+ + Sbjct: 105 ALPWAGTFHSVGARLLRDCAPRIGLSEAFTVHDRGDAEDLMGIVRHEL 152 >gi|117918831|ref|YP_868023.1| ATP-dependent DNA helicase Rep [Shewanella sp. ANA-3] gi|117611163|gb|ABK46617.1| ATP-dependent DNA helicase Rep [Shewanella sp. ANA-3] Length = 671 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + ++ + V A AGSGKT +++ ++ L+ + + +T T AA Sbjct: 1 MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVQKCGYNARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + +AR GL + T Sbjct: 61 REMKERVAQSMGR--------------------------KEAR-----------GLWIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + F++ D++ + L++E + L +++L KA Sbjct: 84 FHTLGLEIVKREHKVLGLKPGFSLFDDQDTLALLKELTQKELQE-----DKDLLKALAGA 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|284800229|ref|ZP_06390624.1| putative exodeoxyribonuclease V beta chain [Neisseria subflava NJ9703] gi|284795654|gb|EFC51001.1| putative exodeoxyribonuclease V beta chain [Neisseria subflava NJ9703] Length = 561 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 37/203 (18%) Query: 35 WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL- 92 + A+AG+GKT+ + RL+ L +L +T TKAA AE+ R+ + + Sbjct: 19 LIEASAGTGKTYGIAALFTRLIVLEKKDIEKILVVTFTKAATAELKTRLRARLDEVLQVL 78 Query: 93 ---------------------------SDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 D+ L+ I G++ + + L L Sbjct: 79 NEIQTLGGEPEHISDGLNKYYEKEKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKAAL 138 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI--------EEAKKSTL 177 + TIH FC+ +++ + ++D+ + + LI + A +TL Sbjct: 139 SQFDNASIYTIHGFCQRVLRDYAFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATDTTL 198 Query: 178 ASIMLDNNEELKKAFYEILEISN 200 A ++ D ++ EI + Sbjct: 199 AQLVFDRKCTPEEMLAEIKSYTG 221 >gi|188532349|ref|YP_001906146.1| ATP-dependent DNA helicase Rep [Erwinia tasmaniensis Et1/99] gi|188027391|emb|CAO95238.1| ATP-dependent DNA helicase Rep [Erwinia tasmaniensis Et1/99] Length = 672 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 71/198 (35%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T A+ EM R Sbjct: 7 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKASREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + + S+F++ D++ L+++ + L ++ L++ I ND Sbjct: 90 EIIKREYVALGMKSNFSLFDDQDQLALLKDLTERWLE----NDKNLLQQLISTISNWKND 145 Query: 202 E-DIETLISDIISNRTAL 218 D + +S R L Sbjct: 146 LMDPPRAAAGALSERDKL 163 >gi|45657598|ref|YP_001684.1| ATP-dependent DNA helicase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600837|gb|AAS70321.1| atp-dependent DNA helicase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 672 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 40/156 (25%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 + ++ + E +L D V A AG+GKT +V R+ +L+ + S++L LT ++ A Sbjct: 12 EELNPAQMEAVLTLD--GPVLVLAGAGTGKTKTIVSRLAQLVASGIPASSILLLTFSRKA 69 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R + I + + +++QG Sbjct: 70 AREMILR-----------ASMIGNKKCSEVQG---------------------------G 91 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H+FC ++++F +I+S F I DE + + Sbjct: 92 TFHSFCNGVLRKFAPVLDISSGFTILDESDCLDVFQ 127 >gi|332142120|ref|YP_004427858.1| exodeoxyribonuclease V, beta subunit [Alteromonas macleodii str. 'Deep ecotype'] gi|327552142|gb|AEA98860.1| exodeoxyribonuclease V, beta subunit [Alteromonas macleodii str. 'Deep ecotype'] Length = 1336 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 76/201 (37%), Gaps = 15/201 (7%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAA 76 + + ++A + A+AG+GKT + + LRLLL +L +T TKAA Sbjct: 26 NDAQLLDVVAMPLKGRHLIEASAGTGKTFNITRLYLRLLLEKKLTVKEILVMTFTKAATE 85 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDM------SKARHLLITILETPGG 130 E+ R+ + + + + + P + ++ LL Sbjct: 86 EIKGRIAKTLREAFLIWQQAKENDNQIDSNCDPVYQHLFTRCNTDESMALLKAAQLELDE 145 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 V TIHAFC+ ++ Q + + + + L +A + + + + ++ Sbjct: 146 ASVFTIHAFCQHVITQLAFNSGFAMSLNLGN--DTSDLYLQAAEDYIRKVSKNEDD---- 199 Query: 191 AFYEILEISNDEDIETLISDI 211 + +L S E L+ + Sbjct: 200 --FRLLAESGWHTPERLLLEF 218 >gi|148981244|ref|ZP_01816335.1| ATP-dependent DNA helicase Rep [Vibrionales bacterium SWAT-3] gi|145960940|gb|EDK26267.1| ATP-dependent DNA helicase Rep [Vibrionales bacterium SWAT-3] Length = 672 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQECGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGKGEAK-------------------------------------GLIVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E L +D +++L +A Sbjct: 84 FHTMGLTIIRREYKALGLKAGFSLFDDQDQLALLKE-----LTERQIDGDKDLLRALMSA 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|145633860|ref|ZP_01789582.1| ATP-dependent DNA helicase [Haemophilus influenzae 3655] gi|144985302|gb|EDJ92141.1| ATP-dependent DNA helicase [Haemophilus influenzae 3655] Length = 670 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------EQSKGLLVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S+ + DE L++E L ++ + L++ I Sbjct: 84 FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|238789353|ref|ZP_04633139.1| ATP-dependent DNA helicase rep [Yersinia frederiksenii ATCC 33641] gi|238722496|gb|EEQ14150.1| ATP-dependent DNA helicase rep [Yersinia frederiksenii ATCC 33641] Length = 672 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 66/186 (35%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + S+Q T V A AGSGKT ++ ++ L+ P + +T T AA Sbjct: 1 MQLNPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + +AR GL + T Sbjct: 61 REMKERVAQTLGR--------------------------KEAR-----------GLMIAT 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + S+F++ D + L+++ L D+ L++ +I Sbjct: 84 FHTLGLEIIKKEYAALGMKSNFSLFDAQDQLGLLKDLTHKWLE----DDKTLLQQLISQI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|294637927|ref|ZP_06716196.1| ATP-dependent DNA helicase Rep [Edwardsiella tarda ATCC 23685] gi|291088953|gb|EFE21514.1| ATP-dependent DNA helicase Rep [Edwardsiella tarda ATCC 23685] Length = 700 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 42/180 (23%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ +P + +T T AA EM R Sbjct: 34 QQQAVEYVTGPCLVLAGAGSGKTRVITNKIAHLIRVCGYPARQIAAVTFTNKAAREMKER 93 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 94 VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 116 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + +F++ D++ L+ + + L + +L++ I ND Sbjct: 117 EIIKREYKALAMKPNFSLFDDQDQLALLTDLTERWLEK----DKTQLQQLIATISNWKND 172 >gi|68249227|ref|YP_248339.1| ATP-dependent DNA helicase [Haemophilus influenzae 86-028NP] gi|68057426|gb|AAX87679.1| ATP-dependent DNA helicase rep [Haemophilus influenzae 86-028NP] Length = 670 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------EQSKGLLVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S+ + DE L++E L ++ + L++ I Sbjct: 84 FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|323359568|ref|YP_004225964.1| superfamily I DNA and RNA helicase [Microbacterium testaceum StLB037] gi|323275939|dbj|BAJ76084.1| superfamily I DNA and RNA helicase [Microbacterium testaceum StLB037] Length = 1095 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 81/230 (35%), Gaps = 27/230 (11%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 S + + T + + P A V A AGSGKT + RV+ L+ Sbjct: 6 SAATIAAALGQFPPTPEQTAVIESPLAPALVVAGAGSGKTETMAGRVVWLVANGIVRRDE 65 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQG----------KKPNKSDM 114 +L LT T+ AA E++ R+ + S L + ++ + Sbjct: 66 VLGLTFTRKAAGELAERIQRRLQRLSEFETRGLLPLLPELHASGRLGVFAELAAQQGARG 125 Query: 115 SKARHLLITIL---------------ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAI 159 AR ++ L + V T ++F ++++++ L + AI Sbjct: 126 DAARRAVLDALADEYATLGTGESDGDQLLHRPTVSTYNSFADSLVREHGLRIGRDAESAI 185 Query: 160 ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLIS 209 E + L+ ++ + + E + L I+ D ++ L+ Sbjct: 186 LSESAAWLLMRRVVFASDDPRLEERQESPRTLIDAALRIARD-GVDNLVD 234 >gi|28899148|ref|NP_798753.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio parahaemolyticus RIMD 2210633] gi|260364728|ref|ZP_05777315.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus K5030] gi|260876768|ref|ZP_05889123.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus AN-5034] gi|260898155|ref|ZP_05906651.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus Peru-466] gi|28807372|dbj|BAC60637.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio parahaemolyticus RIMD 2210633] gi|308089095|gb|EFO38790.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus Peru-466] gi|308091467|gb|EFO41162.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus AN-5034] gi|308115342|gb|EFO52882.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus K5030] Length = 1227 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 11/128 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA AE+ R+ Sbjct: 37 LIEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRA 96 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I S++ IQ D +A +L+ V TIH FC+ ++ Sbjct: 97 RIHDARIAFARGQSSDPV-IQPLLNEFDDHKQAAEILLQAERQMDEAAVYTIHGFCQRML 155 Query: 145 QQFPLEAN 152 Q E+ Sbjct: 156 TQNAFESG 163 >gi|113968720|ref|YP_732513.1| ATP-dependent DNA helicase Rep [Shewanella sp. MR-4] gi|113883404|gb|ABI37456.1| ATP-dependent DNA helicase Rep [Shewanella sp. MR-4] Length = 671 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + ++ + V A AGSGKT +++ ++ L+ + + +T T AA Sbjct: 1 MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVQKCGYNARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + +AR GL + T Sbjct: 61 REMKERVAQSMGR--------------------------KEAR-----------GLWIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + F++ D++ + L++E + L +++L KA Sbjct: 84 FHTLGLEIVKREHKVLGLKPGFSLFDDQDTLALLKELTQKELQE-----DKDLLKALAGA 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|114049137|ref|YP_739687.1| ATP-dependent DNA helicase Rep [Shewanella sp. MR-7] gi|113890579|gb|ABI44630.1| ATP-dependent DNA helicase Rep [Shewanella sp. MR-7] Length = 671 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + ++ + V A AGSGKT +++ ++ L+ + + +T T AA Sbjct: 1 MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVQKCGYNARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + +AR GL + T Sbjct: 61 REMKERVAQSMGR--------------------------KEAR-----------GLWIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + F++ D++ + L++E + L +++L KA Sbjct: 84 FHTLGLEIVKREHKVLGLKPGFSLFDDQDTLALLKELTQKELQE-----DKDLLKALAGA 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|260773436|ref|ZP_05882352.1| exodeoxyribonuclease V beta chain [Vibrio metschnikovii CIP 69.14] gi|260612575|gb|EEX37778.1| exodeoxyribonuclease V beta chain [Vibrio metschnikovii CIP 69.14] Length = 1204 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + + +L +T T+AA AE+ R+ + Sbjct: 24 LIEASAGTGKTFTIAALYLRLLLGHGNADTRHPTPLTVDQILVVTFTEAATAELRDRIRQ 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I + ++ S++ IQG + +D +L+ V TIH FC+ ++ Sbjct: 84 RIHQ-ARIAFLRGSSDDPVIQGLLADYADRPGVAKVLLQAERQMDEAAVYTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F+ +L + Sbjct: 143 TQNAFESG--SRFSNEFVTDESQLKAQVVADYWRRQFY 178 >gi|238750650|ref|ZP_04612149.1| ATP-dependent DNA helicase rep [Yersinia rohdei ATCC 43380] gi|238711040|gb|EEQ03259.1| ATP-dependent DNA helicase rep [Yersinia rohdei ATCC 43380] Length = 673 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ P + +T T AA EM Sbjct: 4 NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR GL + T H Sbjct: 64 KERVAQTLGR--------------------------KEAR-----------GLMIATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + S+F++ D + L+++ L D+ L++ +I Sbjct: 87 LGLEIIKKEYKALGMKSNFSLFDAQDQLGLLKDLTHKWLE----DDKTLLQQLISQISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|148656349|ref|YP_001276554.1| UvrD/REP helicase [Roseiflexus sp. RS-1] gi|148568459|gb|ABQ90604.1| ATP-dependent DNA helicase, Rep family [Roseiflexus sp. RS-1] Length = 659 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 57/163 (34%), Gaps = 41/163 (25%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 S ++ + P V A AGSGKT +L R+ L++ PS +L LT T A Sbjct: 9 FASLNPEQRTAVAAPPGPILVRAGAGSGKTRVLTLRIAYLIVEHGVSPSNILALTFTNKA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ + GL Sbjct: 69 AREMRQRLRDMPGV--------------------------------------SIRGLTAG 90 Query: 135 TIHAFCEAIMQQF-PLEAN-ITSHFAIADEEQSKKLIEEAKKS 175 T H+ C +++++ T+ F I E++ L A + Sbjct: 91 TFHSVCASVLREHIAGRIGSYTADFTIYAEDEQVHLASAALDA 133 >gi|260881564|ref|ZP_05404714.2| helicase, UvrD/REP/exonuclease family protein [Mitsuokella multacida DSM 20544] gi|260848768|gb|EEX68775.1| helicase, UvrD/REP/exonuclease family protein [Mitsuokella multacida DSM 20544] Length = 874 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 40/164 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 ++ +++ D T + + A AG+GKT+ L R+ +L A P +LCLT T Sbjct: 13 MEFAELNPAQREAVEDLTDNILLLAPAGTGKTNTLAYRIANILAEGRAEPEEILCLTFTN 72 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 A EM R++ R +L Sbjct: 73 KACREMKERIVLRAGEGG---------------------------RRVL----------- 94 Query: 133 VQTIHAFCEAIMQQFPLE-ANITSHFAIADEEQSKKLIEEAKKS 175 V+T H FC +++ +++ + F I DE +I + Sbjct: 95 VRTFHGFCYDVIKTEAKRHSDLFADFTIFDEADCLSIIRDLLSE 138 >gi|50123135|ref|YP_052302.1| ATP-dependent DNA helicase Rep [Pectobacterium atrosepticum SCRI1043] gi|49613661|emb|CAG77112.1| ATP-dependent DNA helicase [Pectobacterium atrosepticum SCRI1043] Length = 673 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 72/208 (34%), Gaps = 43/208 (20%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ + +T T AA EM Sbjct: 4 NPSQQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQARHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + GL + T H Sbjct: 64 KERVAQTLGRKETR-------------------------------------GLMIATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + + S+F++ D++ L++E L L+N++ L + + Sbjct: 87 LGLEIIKREYVALGMKSNFSLFDDQDQMALLKE-----LTEQWLENDKVLLQQLISTISN 141 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFS 226 ++ I+ + + KL +S Sbjct: 142 WKNDLIDPAGAAATARSERDKLFVHCYS 169 >gi|227325835|ref|ZP_03829859.1| ATP-dependent DNA helicase Rep [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 673 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 72/208 (34%), Gaps = 43/208 (20%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ + +T T AA EM Sbjct: 4 NPSQQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQAKHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + GL + T H Sbjct: 64 KERVAQTLGRKETR-------------------------------------GLMIATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + + S+F++ D++ L++E L L+N++ L + + Sbjct: 87 LGLEIIKREYVALGMKSNFSLFDDQDQMALLKE-----LTEQWLENDKVLLQQLISTISN 141 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFS 226 ++ I+ + + KL +S Sbjct: 142 WKNDLIDPAGAAATARSERDKLFVHCYS 169 >gi|309973857|gb|ADO97058.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae R2846] Length = 673 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------EQSKGLLVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S+ + DE L++E L ++ + L++ I Sbjct: 84 FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|238765155|ref|ZP_04626088.1| ATP-dependent DNA helicase rep [Yersinia kristensenii ATCC 33638] gi|238696645|gb|EEP89429.1| ATP-dependent DNA helicase rep [Yersinia kristensenii ATCC 33638] Length = 674 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ P + +T T AA EM Sbjct: 4 NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR GL + T H Sbjct: 64 KERVAQTLGR--------------------------KEAR-----------GLMIATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + S+F++ D + L+++ L D+ L++ +I Sbjct: 87 LGLEIIKKEYKALGMKSNFSLFDAQDQLGLLKDLTHKWLE----DDKTLLQQLISQISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|330859831|emb|CBX70163.1| hypothetical protein YEW_DC12990 [Yersinia enterocolitica W22703] Length = 311 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 38/161 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ P + +T T AA EM Sbjct: 4 NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR GL + T H Sbjct: 64 KERVAQTLGR--------------------------KEAR-----------GLMIATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 I+++ + S+F++ D + L+++ L Sbjct: 87 LGLEIIKKEYKALGMKSNFSLFDAQDQLGLLKDLTHKWLED 127 >gi|297182254|gb|ADI18424.1| superfamily I DNA and RNA helicases [uncultured delta proteobacterium HF4000_08N17] Length = 674 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 60/164 (36%), Gaps = 40/164 (24%) Query: 14 IDLISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHT 71 ++ +S S+Q A T+ + A AGSGKT +++QR+ L+ P +L +T T Sbjct: 1 MNSLSLLNSQQKEAVTTTQGPVLILAGAGSGKTQVIIQRIAYLIRKKQVPPQQILAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ E ++ G+ Sbjct: 61 NKAAEEMRERLKETLSGKQ--------------------------------------NGV 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + T HA ++++ +F I D+ +I+ + Sbjct: 83 HLSTFHALGVNMLRKSIHHLGYRPNFIIYDKNDQLSVIKTIMED 126 >gi|226940129|ref|YP_002795202.1| RecB [Laribacter hongkongensis HLHK9] gi|226715055|gb|ACO74193.1| RecB [Laribacter hongkongensis HLHK9] Length = 1216 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 64/176 (36%), Gaps = 23/176 (13%) Query: 27 ASDPTRS-----AWVSANAGSGKTHILVQRVLRLLLA-------------NAHPSTLLCL 68 A DP R + A+AG+GKT + LRL+L P +L + Sbjct: 7 ALDPRRFPLHGLRLIEASAGTGKTFTIAALYLRLVLGARSEDDGLAFNAGGLLPPQILVV 66 Query: 69 THTKAAAAEMSHRVLEIITAWSHL--SDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 T T+AA E+ R+ + + ++ A + + P A H L + Sbjct: 67 TFTEAATEELRERIRSRLVEAARAFRQNDSDDAFLRGLLDDYPAGQRGRHA-HQLELAAQ 125 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 + TIHA+C+ +++ ++ S F + L E+A Sbjct: 126 WMDEAAIFTIHAYCQKMLRTHAFDSG--SLFELTVNTDESALREQAVNDYWRRHFY 179 >gi|24214893|ref|NP_712374.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601] gi|24195918|gb|AAN49392.1| DNA helicase UvrD [Leptospira interrogans serovar Lai str. 56601] Length = 672 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 40/156 (25%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 + ++ + E +L D V A AG+GKT +V R+ +L+ + S++L LT ++ A Sbjct: 12 EELNPAQMEAVLTLD--GPVLVLAGAGTGKTKTIVSRLAQLVASGIPASSILLLTFSRKA 69 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R + I + + +++QG Sbjct: 70 AREMILR-----------ASMIGNKKCSEVQG---------------------------G 91 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H+FC ++++F +I+S F I DE + + Sbjct: 92 TFHSFCNGVLRKFAPVLDISSGFTILDESDCLDVFQ 127 >gi|329122565|ref|ZP_08251146.1| ATP-dependent DNA helicase Rep [Haemophilus aegyptius ATCC 11116] gi|327473116|gb|EGF18542.1| ATP-dependent DNA helicase Rep [Haemophilus aegyptius ATCC 11116] Length = 670 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------EQSKGLLVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S+ + DE L++E L ++ + L++ I Sbjct: 84 FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|262393458|ref|YP_003285312.1| exodeoxyribonuclease V subunit beta [Vibrio sp. Ex25] gi|262337052|gb|ACY50847.1| exodeoxyribonuclease V beta chain [Vibrio sp. Ex25] Length = 1224 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 11/128 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA AE+ R+ Sbjct: 34 LIEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRA 93 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I S++ IQ D +A +L+ V TIH FC+ ++ Sbjct: 94 RIHDARIAFARGQSSDPV-IQPLLNEFDDHKQAAEILLQAERQMDEAAVYTIHGFCQRML 152 Query: 145 QQFPLEAN 152 Q E+ Sbjct: 153 TQNAFESG 160 >gi|170079561|ref|YP_001736194.1| ATP-dependent nuclease subunit A [Synechococcus sp. PCC 7002] gi|169887230|gb|ACB00939.1| ATP-dependent nuclease subunit A [Synechococcus sp. PCC 7002] Length = 1075 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 47/202 (23%), Positives = 77/202 (38%), Gaps = 36/202 (17%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 +Q A S ++A AG+GKTH+L R L L P ++ +T T+ AA E Sbjct: 2 PLTKQQEKAVTSKTSVSITAGAGTGKTHMLAARYLHHLENDGLSPLQVVAMTFTEKAATE 61 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 + R+ ++I + P+K D L ++ T H Sbjct: 62 LRARIRQVIAQ------------------EHPDKFDW----------LAEVEAAQISTFH 93 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 A I Q+ P A + ++F DE + E LA + + E+ + + Sbjct: 94 AVAMRICQEHPEAAGVPANFQPLDEWEGSIWQAEQLNVALAEMPPELYGEIPYSTLKTA- 152 Query: 198 ISNDEDIETLISDIISNRTALK 219 I L+ D +S R AL+ Sbjct: 153 ------IAALLGDPLSAREALE 168 >gi|15839269|ref|NP_299957.1| ATP-dependent DNA helicase [Xylella fastidiosa 9a5c] gi|9107919|gb|AAF85477.1|AE004074_1 ATP-dependent DNA helicase [Xylella fastidiosa 9a5c] Length = 680 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 68/191 (35%), Gaps = 39/191 (20%) Query: 3 YHNSFQEHSETIDLISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61 Y + + + E + L+ S Q A V A AGSGKTH++V+++ L+ ++ + Sbjct: 9 YTDRYNTYPENVSLMHGLNSPQRAAVLYREGPLLVLAGAGSGKTHVIVEKIAYLITSDCY 68 Query: 62 P-STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 P + +T T +A EM RV + I + Sbjct: 69 PAKRIAAITFTNKSAKEMRERVAKQIKS-------------------------------- 96 Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 GL + T HA +Q + F++ D + + I + + Sbjct: 97 -----SRADGLTICTFHALGLKFLQIEHDAVGLKPGFSVFDADDADAQINDLLHGAKQDV 151 Query: 181 MLDNNEELKKA 191 + D + +A Sbjct: 152 IDDTKRRISRA 162 >gi|254229524|ref|ZP_04922938.1| exodeoxyribonuclease V, beta subunit [Vibrio sp. Ex25] gi|151937989|gb|EDN56833.1| exodeoxyribonuclease V, beta subunit [Vibrio sp. Ex25] Length = 1227 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 11/128 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA AE+ R+ Sbjct: 37 LIEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRA 96 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I S++ IQ D +A +L+ V TIH FC+ ++ Sbjct: 97 RIHDARIAFARGQSSDPV-IQPLLNEFDDHKQAAEILLQAERQMDEAAVYTIHGFCQRML 155 Query: 145 QQFPLEAN 152 Q E+ Sbjct: 156 TQNAFESG 163 >gi|147674146|ref|YP_001217828.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O395] gi|262168313|ref|ZP_06036010.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC27] gi|146316029|gb|ABQ20568.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O395] gi|227014216|gb|ACP10426.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio cholerae O395] gi|262023205|gb|EEY41909.1| exodeoxyribonuclease V beta chain [Vibrio cholerae RC27] Length = 1208 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 13/158 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-------ANAHP---STLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT+ + LRL+L +AHP +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTYTIAGLYLRLVLGHGCAETRHAHPLSVDQILVVTFTEAATAELRDRIRR 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + L+ +++ ++ +D + A LL++ + TIH FC+ ++ Sbjct: 84 RLHD-ARLAFARGASDDPLLRSLLAEFTDHNLAVSLLLSAERQMDEAAIFTIHGFCQRML 142 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 Q E+ S F L + Sbjct: 143 TQNAFESG--SRFENEFVTDESSLKAQVVADYWRRQFY 178 >gi|269122166|ref|YP_003310343.1| UvrD/REP helicase [Sebaldella termitidis ATCC 33386] gi|268616044|gb|ACZ10412.1| UvrD/REP helicase [Sebaldella termitidis ATCC 33386] Length = 995 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 41/193 (21%), Positives = 80/193 (41%), Gaps = 16/193 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT+ L ++ L+ + +T TK A +E+ RVL + S ++ Sbjct: 4 IIKASAGTGKTYSLALEYIKELILGTDFRKIYVMTFTKKATSEIRERVLLFLEEISEGTE 63 Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF----CEAIM--QQFP 148 + + K + + I+ +K+ TI +F + I+ ++ Sbjct: 64 AGDEILENIRKSDPGLTVNQEKMKIIYKDIIYNKDKIKIYTIDSFIKIIFDRIVAEKKHI 123 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLI 208 N D +++K++IE +++ + E K+F N E+ E LI Sbjct: 124 YTYN-------TDNDENKEVIENVLAELISNRY---HMEKVKSFLLKERRRNLEEYEELI 173 Query: 209 SDIISNRTALKLI 221 +I NR + I Sbjct: 174 DQLIKNRWKFEFI 186 >gi|301169366|emb|CBW28966.1| DNA helicase and single-stranded DNA-dependent ATPase [Haemophilus influenzae 10810] Length = 670 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------EQSKGLLVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S+ + DE L++E L ++ + L++ I Sbjct: 84 FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|148654248|ref|YP_001274453.1| UvrD/REP helicase [Roseiflexus sp. RS-1] gi|148566358|gb|ABQ88503.1| UvrD/REP helicase [Roseiflexus sp. RS-1] Length = 1177 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 63/185 (34%), Gaps = 35/185 (18%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 EQ A D ++A G+GKT +V + + L+ P+++L LT + AA EM Sbjct: 200 DPEQQAAVDAPLPLLLAAGPGTGKTRSIVAKYVSLVHQGVDPASILALTFSNRAAEEMRE 259 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R++ + + G +++ T H++ Sbjct: 260 RIIAALRQAAP----------------------------------RLAGRVEISTFHSWG 285 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 I++ + + + + D L+ + L + E + I++ + Sbjct: 286 LNILRIYGARLGLPADVRLLDTADLFLLLSKRLDD-LRLAYFKDLREPTRHLVTIIQAIS 344 Query: 201 DEDIE 205 E Sbjct: 345 RIKDE 349 >gi|330881403|gb|EGH15552.1| exodeoxyribonuclease V, beta subunit [Pseudomonas syringae pv. glycinea str. race 4] Length = 418 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 14/161 (8%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T AA E+ Sbjct: 15 RGSQLIEASAGTGKTFTISALYLRLVLGHGTEQSGFGRELLPPQILVVTFTDAATKELRD 74 Query: 81 RVLEIITAWSHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + ++A + ++ L + V TIH+ Sbjct: 75 RIRTRLAEAARFFRDEIAAPDGLIAELREQFEAEQWPACASRLDIAAQWMDEAAVSTIHS 134 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 +C+ ++++ ++ S F E L+ E + Sbjct: 135 WCQRMLREHAFDSG--SLFTQTLETDHSDLLGEVLRDYWRR 173 >gi|307328515|ref|ZP_07607689.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113] gi|306885783|gb|EFN16795.1| UvrD/REP helicase [Streptomyces violaceusniger Tu 4113] Length = 1232 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 64/190 (33%), Gaps = 30/190 (15%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 +E E + I T + + + A AGSGKT ++ RV+ L+ P +L Sbjct: 19 EELKELL-GIPFTPEQVACITARPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPDRVL 77 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 LT T AA E++ RV + + + + G+ Sbjct: 78 GLTFTNKAAGELAERVRRALVTAGIVDQDPDPGATEEAAGEPV----------------- 120 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + T HAF +++ L + + + +L +S Sbjct: 121 ------ISTYHAFAGQLLKDHGLRVGLEPSARLLADATRFQLAARVLRS-----APGPYP 169 Query: 187 ELKKAFYEIL 196 L + F +++ Sbjct: 170 ALTRPFSDLV 179 >gi|239944122|ref|ZP_04696059.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998] gi|239990574|ref|ZP_04711238.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 11379] Length = 1191 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 63/184 (34%), Gaps = 31/184 (16%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 I T + P + A AGSGKT ++ RV+ L+ P +L LT T A Sbjct: 16 GIPFTPEQTACIIAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 75 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E++ RV + + A +++ + PG + Sbjct: 76 AGELAERVRKALIAAGVTDPDVIDPD-------------------------NPPGEPTIS 110 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HAF ++ + L + + + +L + + L ++F Sbjct: 111 TYHAFAGRLLTEHGLRIGLEPSTRLLADATRYQLAAKVLRE-----APGPYPALTRSFST 165 Query: 195 ILEI 198 ++ Sbjct: 166 LVSD 169 >gi|165975735|ref|YP_001651328.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875836|gb|ABY68884.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 672 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 73/220 (33%), Gaps = 48/220 (21%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNDQQQQAVEYVTGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL + T Sbjct: 61 REMRERVAHSIGK-------------------------------------ENSKGLTIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S + DE L L ++ +N E K + Sbjct: 84 FHTLGFEILKREYKLLGFKSGMTLFDEHDQLAL--------LKHLLPENAAEDKDLLKAL 135 Query: 196 LEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKI 233 + ++ + L +++ R + +F F L++ ++ Sbjct: 136 ISTISNWKNDLLSPEMVLTRVRDERERVFSHFYQLYQNQL 175 >gi|332139482|ref|YP_004425220.1| ATP-dependent DNA helicase Rep [Alteromonas macleodii str. 'Deep ecotype'] gi|327549504|gb|AEA96222.1| ATP-dependent DNA helicase Rep [Alteromonas macleodii str. 'Deep ecotype'] Length = 671 Score = 108 bits (270), Expect = 8e-22, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 38/163 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAA 75 + ++++ + + V A AGSGKT ++ ++ L+ P+ + +T T AA Sbjct: 1 MKLNEAQESAVTYVSGPCLVLAGAGSGKTRVITNKIAHLVRNCDMPARYIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + +AR GLKV T Sbjct: 61 REMKERVAQTLGK--------------------------PEAR-----------GLKVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 H I++ + + F++ D++ S L+ + TL Sbjct: 84 FHTMGLTIIKAHVKDLGLKPGFSLFDDKDSFALLNDLTSDTLD 126 >gi|190149550|ref|YP_001968075.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307245094|ref|ZP_07527187.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307262870|ref|ZP_07544494.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914681|gb|ACE60933.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306853983|gb|EFM86195.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306871775|gb|EFN03495.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 672 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 48/228 (21%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNDQQQQAVEYVTGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL + T Sbjct: 61 REMRERVAHSIGK-------------------------------------ENSKGLTIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S + DE L L ++ +N E K + Sbjct: 84 FHTLGFEILKREYKLLGFKSGMTLFDEHDQLAL--------LKHLLPENAAEDKDLLKAL 135 Query: 196 LEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 + ++ + L +++ R + +F F L++ ++ + Sbjct: 136 ISTISNWKNDLLSPEMVLTRVRDERERVFSHFYRLYQNQLKAYNALDF 183 >gi|269103841|ref|ZP_06156538.1| ATP-dependent DNA helicase Rep [Photobacterium damselae subsp. damselae CIP 102761] gi|268163739|gb|EEZ42235.1| ATP-dependent DNA helicase Rep [Photobacterium damselae subsp. damselae CIP 102761] Length = 672 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 62/186 (33%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + + LT T AA Sbjct: 1 MKLNPRQNEAVKFVSGPCLVLAGAGSGKTRVITNKIAYLVQHCDYKARNIAALTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGKQESK-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + ++F++ D++ L++E + L + + LK+ I Sbjct: 84 FHTLGLNIIRREYKALGLKANFSLFDDQDQMALLKELTEDELE----GDKDLLKQLLSSI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|209521655|ref|ZP_03270348.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. H160] gi|209497914|gb|EDZ98076.1| exodeoxyribonuclease V, beta subunit [Burkholderia sp. H160] Length = 1239 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 9/151 (5%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSD 94 + A+AG+GKT + +RLLL N + +L +T TKAA AE+ R+ + + Sbjct: 28 IEASAGTGKTWNICALYVRLLLEKNLNADQILVVTFTKAATAELHERIRGRLAELHRAIE 87 Query: 95 ------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148 + + + N + A ++ L T + TIHAFC+ +Q+ P Sbjct: 88 MDDDGGDPFIRRLFETTLAPQNGIEREAALKVVRRALRTFDQAAIHTIHAFCQRALQEAP 147 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 A + F + E L E Sbjct: 148 FAAAMPFVFEM--EADDASLRFELAADFWRE 176 >gi|89094047|ref|ZP_01166991.1| ATP-dependent exoDNAse beta subunit [Oceanospirillum sp. MED92] gi|89081721|gb|EAR60949.1| ATP-dependent exoDNAse beta subunit [Oceanospirillum sp. MED92] Length = 1179 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 85/186 (45%), Gaps = 18/186 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH-------PSTLLCLTHTKAAAAEMSHRVLEII- 86 + A+AG+GKT+ + LRLLL P +L +T T+AA E+ R+ + I Sbjct: 19 LIEASAGTGKTYTITALYLRLLLGLGQVGDKPLGPDQILVVTFTEAATEELRDRIRQRIV 78 Query: 87 -TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 S L+D++ + ++ + +D+++A LL + + TIH FC+ +++ Sbjct: 79 DARNSFLTDQVSDPFLAALKAQV---NDIAQAVKLLDQAIRQMDEAAIFTIHGFCQRMLK 135 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 + E+ + ++QS +S + +N ++ A +++ + E Sbjct: 136 RHAFESGSLFDTELTQDDQS------LVRSAVLDYWRNNIYPMQGAVADLVFNHCWQSPE 189 Query: 206 TLISDI 211 LI D+ Sbjct: 190 QLIMDL 195 >gi|301167220|emb|CBW26800.1| Rep helicase, a single-stranded DNA-dependent ATPase [Bacteriovorax marinus SJ] Length = 683 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 38/174 (21%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS-TLLCLTHT 71 I L +++ A + A AGSGKT + R+ ++ A P ++L ++ T Sbjct: 1 MISLSGLNAAQRQAAETIDGPLLILAGAGSGKTRTITYRIAHMVDNLALPQKSILAVSFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R++ ++ KAR GL Sbjct: 61 NKAAKEMRERIIGLLGK--------------------------KKAR-----------GL 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 + T H+ I+++ + +F+I D ++ EA KS A D Sbjct: 84 TMATFHSLGVKILKKEISKLGYHKNFSIYDSADQSAIMREALKSFKAGKQFDQK 137 >gi|148827827|ref|YP_001292580.1| ATP-dependent DNA helicase [Haemophilus influenzae PittGG] gi|148719069|gb|ABR00197.1| ATP-dependent DNA helicase [Haemophilus influenzae PittGG] Length = 670 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------EQSKGLLVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S+ + DE L++E L ++ + L++ I Sbjct: 84 FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|114799490|ref|YP_761244.1| UvrD/REP helicase domain-containing protein [Hyphomonas neptunium ATCC 15444] gi|114739664|gb|ABI77789.1| UvrD/REP helicase domain protein [Hyphomonas neptunium ATCC 15444] Length = 1137 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 38/152 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 + ++ A ++ + A G+GKT LV R+ L P ++L LT + AA EM+ Sbjct: 198 NEEQKRAAGHDGKAVLLKAGPGTGKTQTLVGRLSVLKNRGVDPESILLLTFSNKAAGEMT 257 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R + A + + + T H+F Sbjct: 258 DRAIAAWPAAAGSA--------------------------------------WIGTFHSF 279 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 ++++F A + + D ++ L+E+ Sbjct: 280 GLDLLRRFHDRAGLPPDPRLIDATEAIALLED 311 >gi|322831718|ref|YP_004211745.1| exodeoxyribonuclease V, subunit beta [Rahnella sp. Y9602] gi|321166919|gb|ADW72618.1| exodeoxyribonuclease V, beta subunit [Rahnella sp. Y9602] Length = 1227 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 72/204 (35%), Gaps = 30/204 (14%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANA---------HPSTLLCLTHTKAAAAEMSHR 81 T S + A+AG+GKT + +RL+L + P +L +T T AA E+ R Sbjct: 18 TGSRLIEASAGTGKTFTIAALYVRLVLGHGGDNAFSRPLTPPEILVVTFTDAATKELRDR 77 Query: 82 VLEIITAWS-----HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 + ++ + + E S E + + L E V TI Sbjct: 78 IRARLSQAAGYFLGNPDAENDSDEFLQNLRAEYTPEQWPGCARKLQLAAEWMDESAVSTI 137 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD------------- 183 H +C ++ + ++ S F E +L+ + S Sbjct: 138 HGWCNRMLGEHAFDS--DSLFTQTLETDQTELLMNVVRDYWRSFYFPLGEQEIRMLRGWW 195 Query: 184 -NNEELKKAFYEILEISNDEDIET 206 + E+L ++ +LE + + + Sbjct: 196 RSPEDLHRSVMPLLEYAGELGSDQ 219 >gi|307249494|ref|ZP_07531482.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858487|gb|EFM90555.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 672 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 48/228 (21%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNDQQQQAVEYVTGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL + T Sbjct: 61 REMRERVAHSIGK-------------------------------------ENSKGLTIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S + DE L L ++ +N E K + Sbjct: 84 FHTLGFEILKREYKLLGFKSGMTLFDEHDQLAL--------LKHLLPENAAEDKDLLKAL 135 Query: 196 LEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 + ++ + L +++ R + +F F L++ ++ + Sbjct: 136 ISTISNWKNDLLSPEMVLTRVRDERERVFSHFYRLYQNQLKAYNALDF 183 >gi|303249563|ref|ZP_07335770.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251810|ref|ZP_07533712.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651637|gb|EFL81786.1| ATP-dependent DNA helicase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860717|gb|EFM92728.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 672 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 48/228 (21%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNDQQQQAVEYVTGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL + T Sbjct: 61 REMRERVAHSIGK-------------------------------------ENSKGLTIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S + DE L L ++ +N E K + Sbjct: 84 FHTLGFEILKREYKLLGFKSGMTLFDEHDQLAL--------LKHLLPENAAEDKDLLKAL 135 Query: 196 LEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 + ++ + L +++ R + +F F L++ ++ + Sbjct: 136 ISTISNWKNDLLSPEMVLTRVRDERERVFSHFYRLYQNQLKAYNALDF 183 >gi|304398128|ref|ZP_07380003.1| ATP-dependent DNA helicase Rep [Pantoea sp. aB] gi|304354414|gb|EFM18786.1| ATP-dependent DNA helicase Rep [Pantoea sp. aB] Length = 673 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ + +T T A+ EM Sbjct: 4 NPSQQRAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKASREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR LL + T H Sbjct: 64 KERVAQTLGR--------------------------KEARGLL-----------ISTFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + S+F++ D++ L++E K L ++ L++ I Sbjct: 87 LGLEIIKRETAALGMKSNFSLFDDQDQLALLKELTKEWLE----EDKTLLQQLISTISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|229845640|ref|ZP_04465765.1| ATP-dependent DNA helicase [Haemophilus influenzae 6P18H1] gi|229811440|gb|EEP47144.1| ATP-dependent DNA helicase [Haemophilus influenzae 6P18H1] Length = 670 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------EQSKGLLVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S+ + DE L++E L ++ + L++ I Sbjct: 84 FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLRELISVI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|24379604|ref|NP_721559.1| ATP-dependent DNA helicase [Streptococcus mutans UA159] gi|24377553|gb|AAN58865.1|AE014954_4 ATP-dependent DNA helicase [Streptococcus mutans UA159] Length = 733 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 64/171 (37%), Gaps = 44/171 (25%) Query: 38 ANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT +L R+ L+ +P +L +T T AA EM R A + + E Sbjct: 2 AGAGSGKTRVLTHRIAYLIDEKFINPWNILAITFTNKAAREMKERAF----ALNAATQET 57 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 L + T H+ C I+++ + Sbjct: 58 L-----------------------------------IATFHSMCVRILRRDADHIGYNRN 82 Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL 207 F I D + + L++ K+ +D+ + ++A + + ++ ++ + Sbjct: 83 FTIVDPGEQRTLMKRIFKNF----NIDSKKWNERAVLAAISNAKNDLLDEI 129 >gi|309751752|gb|ADO81736.1| ATP-dependent DNA helicase Rep [Haemophilus influenzae R2866] Length = 671 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------EQSKGLLVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S+ + DE L++E L ++ + L++ I Sbjct: 84 FHTLGFDIIKREYKALGFKSNMTLFDEHDQFVLLKELTADVLK----EDKDLLRELISVI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|269302561|gb|ACZ32661.1| ATP-dependent DNA helicase pcrA [Chlamydophila pneumoniae LPCoLN] Length = 639 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 37/160 (23%) Query: 17 ISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 IS+ Q A + P V A AG+GKT ++ R+L L+ P +L +T T AA Sbjct: 4 ISELNEAQRKAVTAPLNPVLVLAGAGAGKTRVVTYRILHLINQGIAPREILAVTFTNKAA 63 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ R++ + + + V T Sbjct: 64 RELKERIVNQCASTNEFDVPM------------------------------------VCT 87 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 H+ I+++ N ++F I D+ ++KLI+ A + Sbjct: 88 FHSLGVFILRRSINLLNRENNFTIYDQSDAEKLIKYALQQ 127 >gi|68465639|ref|XP_723181.1| potential DNA repair helicase [Candida albicans SC5314] gi|68465932|ref|XP_723034.1| potential DNA repair helicase [Candida albicans SC5314] gi|46445047|gb|EAL04318.1| potential DNA repair helicase [Candida albicans SC5314] gi|46445203|gb|EAL04473.1| potential DNA repair helicase [Candida albicans SC5314] Length = 862 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 85/215 (39%), Gaps = 38/215 (17%) Query: 2 IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANA 60 + S Q + ++ ++ + + + A R + A G+GKT +L+ RV LL+ N Sbjct: 1 MMSTSNQVLDKILESLNANQRKAVTAPCNGR-LQIIAGPGTGKTKVLISRVAYLLISENI 59 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 P ++ T TK AA EM R+ +++ D+++ Sbjct: 60 RPDNMIVTTFTKRAANEMIERLTKLVEGTDINIDKLI----------------------- 96 Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 + T H+ C I++++ ++ ++ IADE +++ + A Sbjct: 97 ------------IGTFHSICFRIIKKYGKLIDLE-NYTIADERDKSYILKTMLTNLSAKD 143 Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215 + + +++ ++ +E L +IS + Sbjct: 144 IERLDSFGEESLQKLRSHKANEKYHGLDLSVISKK 178 >gi|307254049|ref|ZP_07535896.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258505|ref|ZP_07540242.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306862974|gb|EFM94921.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867409|gb|EFM99260.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 672 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 48/228 (21%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNDQQQQAVEYVTGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL + T Sbjct: 61 REMRERVAHSIGK-------------------------------------ENSKGLTIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S + DE L L ++ +N E K + Sbjct: 84 FHTLGFEILKREYKLLGFKSGMTLFDEHDQLAL--------LKHLLPENAAEDKDLLKAL 135 Query: 196 LEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 + ++ + L +++ R + +F F L++ ++ + Sbjct: 136 ISTISNWKNDLLSPEMVLTRVRDERERVFSHFYRLYQNQLKAYNALDF 183 >gi|298368953|ref|ZP_06980271.1| ATP-dependent DNA helicase Rep [Neisseria sp. oral taxon 014 str. F0314] gi|298282956|gb|EFI24443.1| ATP-dependent DNA helicase Rep [Neisseria sp. oral taxon 014 str. F0314] Length = 688 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 59/174 (33%), Gaps = 38/174 (21%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q V A AGSGKT ++ Q++ L++ P T+ +T T AA Sbjct: 19 MKLNPQQQAAVKYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAA 78 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV +++ GL + T Sbjct: 79 TEMQERVAKMLPK-------------------------------------SQTRGLTICT 101 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 H+ I+++ +F+I D S K+I E ST + ++ Sbjct: 102 FHSLGMKILREEANHIGYKKNFSILDSTDSAKIIGELLGSTGKEALFKAQHQIS 155 >gi|28896815|ref|NP_796420.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus RIMD 2210633] gi|153838645|ref|ZP_01991312.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus AQ3810] gi|260362654|ref|ZP_05775553.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus K5030] gi|260877719|ref|ZP_05890074.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus AN-5034] gi|260895632|ref|ZP_05904128.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus Peru-466] gi|28805023|dbj|BAC58304.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus RIMD 2210633] gi|149747973|gb|EDM58833.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus AQ3810] gi|308088562|gb|EFO38257.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus Peru-466] gi|308089714|gb|EFO39409.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus AN-5034] gi|308113730|gb|EFO51270.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus K5030] gi|328471594|gb|EGF42471.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus 10329] Length = 671 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 61/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGKAESK-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + + F++ D++ L++E + L + + LK+ I Sbjct: 84 FHTLGLNIIKREYKQLGLKAGFSLFDDQDQMALLKELTEKQLD----GDKDLLKQLLSTI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|308188833|ref|YP_003932964.1| rep helicase, a single-stranded DNA dependent ATPase [Pantoea vagans C9-1] gi|308059343|gb|ADO11515.1| rep helicase, a single-stranded DNA dependent ATPase [Pantoea vagans C9-1] Length = 673 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ + +T T A+ EM Sbjct: 4 NPSQQRAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKASREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR LL + T H Sbjct: 64 KERVAQTLGR--------------------------KEARGLL-----------ISTFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + S+F++ D++ L++E K L ++ L++ I Sbjct: 87 LGLEIIKRETAALGMKSNFSLFDDQDQLALLKELTKEWLE----EDKTLLQQLISTISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|227114355|ref|ZP_03828011.1| ATP-dependent DNA helicase Rep [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 673 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 63/183 (34%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ + +T T AA EM Sbjct: 4 NPSQQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQAKHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + GL + T H Sbjct: 64 KERVSQTLGRKETR-------------------------------------GLMIATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + + S+F++ D++ L++E + L ++ L++ I Sbjct: 87 LGLEIIKREYVALGMKSNFSLFDDQDQMALLKELTEQWLE----NDKVLLQQLISTISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|260900330|ref|ZP_05908725.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus AQ4037] gi|308108575|gb|EFO46115.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus AQ4037] Length = 1227 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 11/128 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA AE+ R+ Sbjct: 37 LIEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRA 96 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I S + IQ D +A +L+ V TIH FC+ ++ Sbjct: 97 RIHDARIAFARGQSYDPV-IQPLLNEFDDHKQAAEILLQAERQMDEAAVYTIHGFCQRML 155 Query: 145 QQFPLEAN 152 Q E+ Sbjct: 156 TQNAFESG 163 >gi|163753956|ref|ZP_02161079.1| UvrD/REP helicase [Kordia algicida OT-1] gi|161326170|gb|EDP97496.1| UvrD/REP helicase [Kordia algicida OT-1] Length = 969 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 82/235 (34%), Gaps = 49/235 (20%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 +QL + A G+GKT LV+R + L+ P +L T T+ AA E+ Sbjct: 5 NNPYQQLAIDTTEGPVLIIAGPGAGKTRTLVERTVNLIQKGTKPEEILVATFTEKAAKEL 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + L + I + + T+H+ Sbjct: 65 VTRISNRL---------------------------------LELEIKVNLNEMYIGTLHS 91 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL---------- 188 ++++ + + + D+ K + + + +A ++N+EE+ Sbjct: 92 IFLRFLEEYREFTRLKRSYRLLDQFDQKFFLYQNMRDFVA---IENSEEILGGHNLSSWY 148 Query: 189 -KKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 + +E+++ ++IS A + F L+ K+ E++ + Sbjct: 149 KADKLINYINKVGEENLD--FEELISAEDANISVIGEFYKLYIEKLNEENALDFS 201 >gi|70888451|gb|AAZ13818.1| ATP-dependent DNA helicase Rep [Vibrio alginolyticus] Length = 671 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGKAESK-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E + L + + L++ I Sbjct: 84 FHTLGLNIIKREYKHLGLKAGFSLFDDQDQLALLKELTEKQLD----GDKDLLRQLLSYI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|321252838|ref|XP_003192537.1| ATP-dependent DNA helicase [Cryptococcus gattii WM276] gi|317459006|gb|ADV20750.1| ATP-dependent DNA helicase, putative [Cryptococcus gattii WM276] Length = 1036 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 72/185 (38%), Gaps = 48/185 (25%) Query: 16 LISQTKSEQLLA--SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTK 72 ++ QL A ++P+ + A GSGKT +L RV L+ P+ ++ +T T Sbjct: 13 YLASLNQAQLKAVIANPSTPLQILAGPGSGKTRVLTCRVAYLVQHYKYSPNEIVAVTFTN 72 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 +A EM R+ +++ + L Sbjct: 73 KSANEMRKRLQKLLGD-------------------------------------KQADQLV 95 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 + T HA C ++++ +++++F IAD + KK++ + I+ + L +A Sbjct: 96 LGTFHATCVKYLRRYGRLIDLSNNFVIADADDCKKIM--------SGILKNRKAALDEAS 147 Query: 193 YEILE 197 + E Sbjct: 148 MSLKE 152 >gi|212703125|ref|ZP_03311253.1| hypothetical protein DESPIG_01164 [Desulfovibrio piger ATCC 29098] gi|212673391|gb|EEB33874.1| hypothetical protein DESPIG_01164 [Desulfovibrio piger ATCC 29098] Length = 963 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 36/160 (22%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T+ +Q + + V A G+GKT LV+R++ L+ P LL T T+ AA E Sbjct: 5 PTQQQQAVINHDEGPVLVIAGPGAGKTFTLVERIVHLVAHKGIQPEQLLVATFTEKAANE 64 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE-TPGGLKVQTI 136 ++ R+ AR L+ ++ + V T+ Sbjct: 65 LTSRI----------------------------------ARRLMQEGVQANVDEMYVGTL 90 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ C ++++ + +F + D+ + + Sbjct: 91 HSICLRLLEEHREFTRLRKNFTLMDQFDQSYFFFQHLRQF 130 >gi|145639403|ref|ZP_01795008.1| ATP-dependent DNA helicase [Haemophilus influenzae PittII] gi|145271450|gb|EDK11362.1| ATP-dependent DNA helicase [Haemophilus influenzae PittII] Length = 671 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------EQSKGLLVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S+ + DE L++E L ++ + L++ I Sbjct: 84 FHTLGFDIIKREYKALGFKSNMTLFDEHDQFVLLKELTADVLK----EDKDLLRELISVI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|83747407|ref|ZP_00944446.1| ATP-dependent DNA helicase rep [Ralstonia solanacearum UW551] gi|207744777|ref|YP_002261169.1| atp-dependent dna helicase rep protein [Ralstonia solanacearum IPO1609] gi|83725864|gb|EAP73003.1| ATP-dependent DNA helicase rep [Ralstonia solanacearum UW551] gi|206596187|emb|CAQ63114.1| atp-dependent dna helicase rep protein [Ralstonia solanacearum IPO1609] Length = 705 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 30/142 (21%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 V A AGSGKT ++ Q++ L+L P + +T T AA EM RV +++ Sbjct: 21 DGPCLVLAGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDGK 80 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + + ++ + L V T H+ I++ Sbjct: 81 TREDGKRIAIK-----------------------------QLTVCTFHSLGVQILRAEAE 111 Query: 150 EANITSHFAIADEEQSKKLIEE 171 + F+I D + +I+E Sbjct: 112 HVGLKPRFSIMDSDDCFGMIQE 133 >gi|238784760|ref|ZP_04628763.1| ATP-dependent DNA helicase rep [Yersinia bercovieri ATCC 43970] gi|238714356|gb|EEQ06365.1| ATP-dependent DNA helicase rep [Yersinia bercovieri ATCC 43970] Length = 673 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 62/183 (33%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ P + +T T AA EM Sbjct: 4 NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + GL + T H Sbjct: 64 KERVSQTLGRKESR-------------------------------------GLMIATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + S+F++ D + L+++ L D+ L++ +I Sbjct: 87 LGLEIIKKEYAALGMKSNFSLFDAQDQLGLLKDLTHKWLE----DDKTLLQQLISQISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|153836760|ref|ZP_01989427.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus AQ3810] gi|149749906|gb|EDM60651.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus AQ3810] Length = 1227 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 11/128 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA AE+ R+ Sbjct: 37 LIEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRA 96 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I S + IQ D +A +L+ V TIH FC+ ++ Sbjct: 97 RIHDARIAFARGQSYDPV-IQPLLNEFDDHKQAAEILLQAERQMDEAAVYTIHGFCQRML 155 Query: 145 QQFPLEAN 152 Q E+ Sbjct: 156 TQNAFESG 163 >gi|241664737|ref|YP_002983097.1| UvrD/REP helicase [Ralstonia pickettii 12D] gi|240866764|gb|ACS64425.1| UvrD/REP helicase [Ralstonia pickettii 12D] Length = 706 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 32/163 (19%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 S + ++ +SE + D V A AGSGKT ++ Q++ L+L P + + Sbjct: 2 SSGLVHGLNAAQSEGVHYLD--GPCLVLAGAGSGKTRVITQKIAHLILDKGFEPKHIAAV 59 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV +++ + + + + Sbjct: 60 TFTNKAAKEMQERVAKLMDGETREDGKRIPIK---------------------------- 91 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 L V T H+ I++ + F+I D + +I+E Sbjct: 92 -QLTVCTFHSLGVQILRAEAEHVGLKPRFSIMDSDDCFGMIQE 133 >gi|302771199|ref|XP_002969018.1| hypothetical protein SELMODRAFT_409804 [Selaginella moellendorffii] gi|300163523|gb|EFJ30134.1| hypothetical protein SELMODRAFT_409804 [Selaginella moellendorffii] Length = 1196 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 38/174 (21%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 S + + ++ ++ + L S+ + + A GSGKT +V R+L LL + Sbjct: 252 SAADMPTYLRKLNVSQRDAAL-SNIDKPLLIVAGPGSGKTSTMVARILTLLNEGVDSKNI 310 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T AAA EM RV ++ Sbjct: 311 LGMTFTTAAATEMMDRVAAVVGK------------------------------------- 333 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 E L + T H+FC + + + N TS F + Q +K + EA + L + Sbjct: 334 EASKELMISTFHSFCLQLCRSHAEKLNRTSEFLVYGASQQRKAVIEATRLALEA 387 >gi|260902656|ref|ZP_05911051.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus AQ4037] gi|308109679|gb|EFO47219.1| ATP-dependent DNA helicase Rep [Vibrio parahaemolyticus AQ4037] Length = 671 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 61/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGKAESK-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + + F++ D++ L++E + L + + LK+ I Sbjct: 84 FHTLGLNIIKREYKQLGLKAGFSLFDDQDQMALLKELTEKQLD----GDKDLLKQLLSSI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|218512941|ref|ZP_03509781.1| exonuclease RexA [Rhizobium etli 8C-3] Length = 144 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 21/158 (13%) Query: 59 NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKAR 118 LL +T T+AAA EM R+ E + + + + R Sbjct: 2 GFDIDELLIVTFTEAAAREMKERIQEALQESVNSESDPVR-------------------R 42 Query: 119 HLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 L + T+HAFC +++++ +I F + +E L++E L Sbjct: 43 QHFTKQLVLLPTANISTLHAFCLTVIRRYYYLIDIDPVFRMLTDETETILMKEDVWDELR 102 Query: 179 SIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRT 216 + N+E + F + SND + L + + S Sbjct: 103 EALYAENDE--RFFQLTMNFSNDRSDDGLTNLVFSLYE 138 >gi|322514244|ref|ZP_08067305.1| exodeoxyribonuclease V beta subunit [Actinobacillus ureae ATCC 25976] gi|322119856|gb|EFX91870.1| exodeoxyribonuclease V beta subunit [Actinobacillus ureae ATCC 25976] Length = 1202 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 62/157 (39%), Gaps = 10/157 (6%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHP---STLLCLTHTKAAAAEMSHRVLEII 86 +A + A+AG+GKT + LRLLL P +L +T TKAA E+ R+ + I Sbjct: 12 NCTALIEASAGTGKTFTMANLYLRLLLGIGCAPLTVEQILVVTFTKAATEELRDRIRKNI 71 Query: 87 TAWSHLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 A E + + + +A L + TIH+FC+ Sbjct: 72 KACCTFLQEYDAEKSYDANDFFFQLGQQIESVEEAILRLRIAEREIDLASIFTIHSFCQK 131 Query: 143 IMQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTL 177 ++ QF ++ S + + +L EE + Sbjct: 132 MLFQFAFDSGMRFDSDLQPDESDLLLRLSEEVWREMF 168 >gi|187479029|ref|YP_787053.1| DNA helicase [Bordetella avium 197N] gi|115423615|emb|CAJ50155.1| DNA helicase [Bordetella avium 197N] Length = 685 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 58/168 (34%), Gaps = 37/168 (22%) Query: 15 DLISQTKSEQLLASD-----PTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCL 68 D + + +Q A+ P V A AGSGKT +L RV +L+ A P +L L Sbjct: 10 DPLDELNPQQREAATFGIGQPDAPALLVIAGAGSGKTSVLAHRVAQLIRHGADPQRVLLL 69 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T ++ AA EM R ++ R ++ P Sbjct: 70 TFSRRAAQEMDRRAGGVL-------------------------------RRVMQLGAAAP 98 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ +++ ++ F + D ++ L+ + Sbjct: 99 SLPWAGTFHSVGARLLRDCATRIGLSESFTVHDRGDAEDLMGLLRHEL 146 >gi|328474312|gb|EGF45117.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio parahaemolyticus 10329] Length = 1227 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 11/128 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA AE+ R+ Sbjct: 37 LIEASAGTGKTFTIAGLYLRLLLGHGSAETRHRVPLTVDQILVVTFTEAATAELRDRIRA 96 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I S++ IQ D +A +L+ V TIH FC+ ++ Sbjct: 97 RIHDARIAFARGRSSDPV-IQPLLNEFDDHKQAAEVLLQAERQMDEAAVYTIHGFCQRML 155 Query: 145 QQFPLEAN 152 Q E+ Sbjct: 156 TQNAFESG 163 >gi|254292195|ref|ZP_04962964.1| ATP-dependent DNA helicase rep [Vibrio cholerae AM-19226] gi|150421897|gb|EDN13875.1| ATP-dependent DNA helicase rep [Vibrio cholerae AM-19226] Length = 432 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVAQTLGKGESR-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E L LD +++L + Sbjct: 84 FHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRLLLST 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|117619432|ref|YP_858409.1| exodeoxyribonuclease V, beta subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560839|gb|ABK37787.1| exodeoxyribonuclease V, beta subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1205 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 65/180 (36%), Gaps = 22/180 (12%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA-------------------HPSTLLCLTHTKAAA 75 + A+AG+GKT+ + LRLLL + + +L +T T+AA Sbjct: 17 LIEASAGTGKTYTIAGLYLRLLLGHGPLIEEGADAGQPSAHERPLSVTEILVVTFTEAAT 76 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AE+ R+ I S + Q + AR LL V T Sbjct: 77 AELRGRIRGRIHEARLAFMRGESKDALLSQLLAEVEDHELAARRLLA-AERQMDEAAVFT 135 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH FC+ +++Q E+ + F +L +A S ++ L A + Sbjct: 136 IHGFCQRMLKQNAFESG--ALFETEFLTDDSQLRLQAVSDYWRSEFYPVDKPLASAVRAL 193 >gi|52425154|ref|YP_088291.1| RecB protein [Mannheimia succiniciproducens MBEL55E] gi|52307206|gb|AAU37706.1| RecB protein [Mannheimia succiniciproducens MBEL55E] Length = 1205 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 35/187 (18%), Positives = 67/187 (35%), Gaps = 18/187 (9%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH--------PSTLLCLTHTKAAAAEMSHRV 82 + + A+AG+GKT + LRLLL +L +T T+AA E+ R+ Sbjct: 2 NSTLLIEASAGTGKTFTMASLYLRLLLQAGENCFFKPLEVEQILVVTFTEAATQELRERI 61 Query: 83 LEII--------TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 I + + ++ +I + ++ A L + + Sbjct: 62 RHRIHLAKKQLTQYAENKNKQVFYGTENEILADLVDSLELPVAIQRLKIAEQNMDLAAIY 121 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 TIH FC ++ Q+ + I HF + + +L+ + + L + Sbjct: 122 TIHGFCRRMLVQYAFNSGI--HFNLQLVKDETELLTRFSNELWREHFYNLSFSLTNFIHR 179 Query: 195 ILEISND 201 L+ D Sbjct: 180 NLKSPTD 186 >gi|307256414|ref|ZP_07538196.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865044|gb|EFM96945.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 1202 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 10/174 (5%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 +A + A+AG+GKT + LRLLL A+ +L +T TKAA E+ R+ I Sbjct: 12 NCTALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNI 71 Query: 87 TAWSHLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 A E + + + +A L + TIH+FC+ Sbjct: 72 KACRRFLQEYDAEKSYDANDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIHSFCQK 131 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 ++ QF ++ + F + L+ + + A E L Sbjct: 132 MLFQFAFDSGM--RFDNDLQPDESDLLRRLSEEVWREMFYPMGLTETAAVAEYL 183 >gi|318607671|emb|CBY29169.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp. palearctica Y11] Length = 674 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ P + +T T AA EM Sbjct: 4 NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR GL + T H Sbjct: 64 KERVAQTLGR--------------------------KEAR-----------GLMIATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + S+F++ D + L+++ L D+ L++ +I Sbjct: 87 LGLEIIKKEYKALGMKSNFSLFDAQDQLGLLKDLTHKWLE----DDKTLLQQLISQISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|288573981|ref|ZP_06392338.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569722|gb|EFC91279.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 1160 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 21/162 (12%) Query: 9 EHSETIDLISQ--TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 E + D+++ +++ + VSA AG+GKT L R + + A + Sbjct: 6 EIASLTDMVNSATLPAQKEAITAEESLVVVSAGAGTGKTWTLAWRFVWAVATGRARAGEI 65 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L LT T AA EM+ R+ + ++G P ++ L L Sbjct: 66 LTLTFTDKAATEMAERIRLL------------------MEGLLPKTKELPTVAAALREGL 107 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKK 167 E+ + TIH+F ++++ L ++ + + Sbjct: 108 ESLEDSYISTIHSFSSRVIRESGLSLDLDPASRVVSAPEEDL 149 >gi|300702548|ref|YP_003744148.1| ATP-dependent DNA helicase [Ralstonia solanacearum CFBP2957] gi|299070209|emb|CBJ41500.1| ATP-dependent DNA helicase [Ralstonia solanacearum CFBP2957] Length = 705 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 30/142 (21%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 V A AGSGKT ++ Q++ L+L P + +T T AA EM RV +++ Sbjct: 21 DGPCLVLAGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDGK 80 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + + + + L V T H+ I++ Sbjct: 81 TREDGKRIPIK-----------------------------QLTVCTFHSLGVQILRAEAE 111 Query: 150 EANITSHFAIADEEQSKKLIEE 171 + F+I D + +I+E Sbjct: 112 HVGLKPRFSIMDSDDCFGMIQE 133 >gi|217968706|ref|YP_002353940.1| UvrD/REP helicase [Thauera sp. MZ1T] gi|217506033|gb|ACK53044.1| UvrD/REP helicase [Thauera sp. MZ1T] Length = 663 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 35/159 (22%), Positives = 57/159 (35%), Gaps = 40/159 (25%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L++ + E + D V A AGSGKT ++ ++ L+ P+ + +T T A Sbjct: 4 LLNAPQREAIRYLD--GPCLVLAGAGSGKTRVITHKIAHLINECGISPNNIAAITFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV I+ PGGL V Sbjct: 62 AKEMQERVAHIMGGRV-------------------------------------PGGLTVC 84 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T HA I++Q + F+I D + +++ + Sbjct: 85 TFHALGVRIVRQEAKHCGLKPQFSILDASDTVQIVSDVA 123 >gi|29829618|ref|NP_824252.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680] gi|29606726|dbj|BAC70787.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680] Length = 1202 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 62/182 (34%), Gaps = 31/182 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T A Sbjct: 38 GIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 97 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E++ RV + + +++ + PG + Sbjct: 98 AGELAERVRKALVKAGITDPDVIDPD-------------------------NPPGEPVIS 132 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HAF ++ L + + + +L + L ++F + Sbjct: 133 TYHAFAGRLLTDHGLRIGLEPTARLLADATRYQLAARVLRE-----APGPYPALTRSFPD 187 Query: 195 IL 196 ++ Sbjct: 188 LV 189 >gi|207722204|ref|YP_002252641.1| atp-dependent dna helicase rep protein [Ralstonia solanacearum MolK2] gi|206587379|emb|CAQ17962.1| atp-dependent dna helicase rep protein [Ralstonia solanacearum MolK2] Length = 705 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 30/142 (21%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 V A AGSGKT ++ Q++ L+L P + +T T AA EM RV +++ Sbjct: 21 DGPCLVLAGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDGK 80 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + + + + L V T H+ I++ Sbjct: 81 TREDGKRIPIK-----------------------------QLTVCTFHSLGVQILRAEAE 111 Query: 150 EANITSHFAIADEEQSKKLIEE 171 + F+I D + +I+E Sbjct: 112 HVGLKPRFSIMDSDDCFGMIQE 133 >gi|227497414|ref|ZP_03927646.1| possible UvrD/REP helicase [Actinomyces urogenitalis DSM 15434] gi|226833090|gb|EEH65473.1| possible UvrD/REP helicase [Actinomyces urogenitalis DSM 15434] Length = 1152 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 33/229 (14%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLT 69 + + + T + + P V A AGSGKT + QRV+ L+ + A P +L LT Sbjct: 22 ARALGIHEPTPEQAAVICHPLSPVLVVAGAGSGKTATMSQRVVYLVASGAVEPGEVLGLT 81 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T+ AAAE++ R+ + A + E G P Sbjct: 82 FTRKAAAELAQRISVRLDALAGSGLIERDEE-----GLDP-------------------- 116 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + T ++F I++ L + + E ++ +++ + + L++ + Sbjct: 117 --TIATYNSFAGTIVRDHGLRIGVDPDATLITEARAWQVVSAIVERRRQPLPLESPARVT 174 Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 + + + E L+ ++ R L + FF L + ++ ++ Sbjct: 175 ELVLAL----DGALCENLL-EVDQAREQLGELDSFFESLATVRGLKTAV 218 >gi|85711556|ref|ZP_01042614.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Idiomarina baltica OS145] gi|85694708|gb|EAQ32648.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Idiomarina baltica OS145] Length = 1230 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 79/185 (42%), Gaps = 20/185 (10%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRL-------------LLANAHPSTLLCLTHTKAAAAE 77 S + A+AG+GKT+ + +RL L P +L +T TKAA E Sbjct: 14 AGSRLIEASAGTGKTYTIAALYVRLVIGMRADSDSNAALETPLLPRNILVMTFTKAATEE 73 Query: 78 MSHRVLEIITAWSHL--SDEILSAEITKIQGKKPNKSD---MSKARHLLITILETPGGLK 132 +S R+ + + D+ ++A+ Q + +++ ++ LL E+ Sbjct: 74 LSDRIRARLAEAARYFRDDDSVAADPFLTQLRATSEAQGESLNYLARLLELASESMDEAA 133 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V+TIH +C++++++ + S F E ++L +A + + ++ + A Sbjct: 134 VKTIHGWCQSMLKEHAFASG--SLFTQNVETDDEELRRQAAEDYFRRFIYQSDRATQTAL 191 Query: 193 YEILE 197 + + Sbjct: 192 LAVFD 196 >gi|84394502|ref|ZP_00993213.1| ATP-dependent DNA helicase Rep [Vibrio splendidus 12B01] gi|84374879|gb|EAP91815.1| ATP-dependent DNA helicase Rep [Vibrio splendidus 12B01] Length = 672 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 43/179 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 + + V A AGSGKT ++ ++ L+ + +T T AA EM Sbjct: 4 NPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQECGYKARNIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + GL V T H Sbjct: 64 KERVGQTLGKGESK-------------------------------------GLIVSTFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 I+++ + + F++ D++ L++E L +D +++L ++ + Sbjct: 87 MGLTIIRREYKALGLKAGFSLFDDQDQLALLKE-----LTETQIDGDKDLLRSLMSTIS 140 >gi|239993847|ref|ZP_04714371.1| ATP-dependent DNA helicase Rep [Alteromonas macleodii ATCC 27126] Length = 671 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 38/163 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAA 75 + ++++ + + V A AGSGKT ++ ++ L+ P+ + +T T AA Sbjct: 1 MKLNEAQESAVTFVSGPCLVLAGAGSGKTRVITNKIAHLVRNCDMPARYIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + +AR GLKV T Sbjct: 61 REMKERVAQTLGK--------------------------PEAR-----------GLKVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 H I++ + + F++ D++ S L+ + TL Sbjct: 84 FHTMGLTIIKAHVKDLGLKPGFSLFDDKDSFALLNDLTSDTLD 126 >gi|54307318|ref|YP_128338.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum SS9] gi|46911738|emb|CAG18536.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum SS9] Length = 673 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 76/226 (33%), Gaps = 44/226 (19%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + + LT T AA Sbjct: 1 MKLNSRQTEAVKYISGPCLVLAGAGSGKTRVITNKIAYLVQHCDYKARNIAALTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGKTLGKKEAK-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + ++F++ D++ L++E L LD +++L K Sbjct: 84 FHTLGLNIIRREYKALGLKANFSLFDDQDQMALLKE-----LTEAELDGDKDLLKLLQSA 138 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 + +E + + + +L + L++R++ + Sbjct: 139 ISNWKNEMLSAAEAQAYAQSERDQLFAHCYE-LYQRQMKAYNALDF 183 >gi|225075585|ref|ZP_03718784.1| hypothetical protein NEIFLAOT_00599 [Neisseria flavescens NRL30031/H210] gi|224953007|gb|EEG34216.1| hypothetical protein NEIFLAOT_00599 [Neisseria flavescens NRL30031/H210] Length = 389 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 37/203 (18%) Query: 35 WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL- 92 + A+AG+GKT+ + RL+ L +L +T TKAA AE+ R+ + + Sbjct: 19 LIEASAGTGKTYGIAALFTRLIVLEKKDIEKILVVTFTKAATAELKTRLRARLDEVLQVL 78 Query: 93 ---------------------------SDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 D+ L+ I G++ + + L L Sbjct: 79 NEIQTLGGKPEHISDGLNKYYEKEKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKAAL 138 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI--------EEAKKSTL 177 + TIH FC+ +++ + ++D+ + + LI + A +TL Sbjct: 139 SQFDNASIYTIHGFCQRVLRDYAFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATDATL 198 Query: 178 ASIMLDNNEELKKAFYEILEISN 200 A ++ D ++ EI + Sbjct: 199 AQLVFDRKCTPEEILAEIKSYTG 221 >gi|150401988|ref|YP_001329282.1| UvrD/REP helicase [Methanococcus maripaludis C7] gi|159906221|ref|YP_001549883.1| UvrD/REP helicase [Methanococcus maripaludis C6] gi|150033018|gb|ABR65131.1| UvrD/REP helicase [Methanococcus maripaludis C7] gi|159887714|gb|ABX02651.1| UvrD/REP helicase [Methanococcus maripaludis C6] Length = 946 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 39/147 (26%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 TKS+ V A G+GKT ++++V+ L+ P+ LL +T T AA E+ Sbjct: 9 TKSQMDAIKYVESPLLVVAGPGTGKTRTIIEKVVYLVEELGYDPNKLLVVTFTIKAADEL 68 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + +++ TIH+ Sbjct: 69 KDRLRKRLGDRVET--------------------------------------MQISTIHS 90 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQS 165 FC+ +++ FP N S F + DE Sbjct: 91 FCQRMLEMFPEYHNYGSVFEVMDELDQ 117 >gi|22124272|ref|NP_667695.1| ATP-dependent DNA helicase Rep [Yersinia pestis KIM 10] gi|45442925|ref|NP_994464.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Microtus str. 91001] gi|21957041|gb|AAM83946.1|AE013636_4 rep helicase, a single-stranded DNA dependent ATPase [Yersinia pestis KIM 10] gi|45437792|gb|AAS63341.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Microtus str. 91001] Length = 691 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ P + +T T AA EM Sbjct: 22 NPSQQEAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 81 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR GL + T H Sbjct: 82 KERVAQTLGR--------------------------KEAR-----------GLMIATFHT 104 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + + S+F++ D + L+++ L D+ L++ I Sbjct: 105 LGLEIIKKEYVALGMKSNFSLFDAQDQMGLLKDLTHKWLE----DDKTLLQQLVSAISNW 160 Query: 199 SND 201 ND Sbjct: 161 KND 163 >gi|28572402|ref|NP_789182.1| ATP-dependent DNA helicase subunit [Tropheryma whipplei TW08/27] gi|28410533|emb|CAD66919.1| putative ATP-dependent DNA helicase subunit [Tropheryma whipplei TW08/27] Length = 973 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 94/232 (40%), Gaps = 37/232 (15%) Query: 2 IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA- 60 + + ++L + T+ ++ + P +A V A AGSGKT LV R+L L+ + Sbjct: 3 MSLRDSRHMCSILNLHAPTEEQRAIIESPLENALVIAGAGSGKTETLVLRLLWLIASGKL 62 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 P +++ LT T+ AA E++ R+ + + + + ++LS EI + Sbjct: 63 KPESIMGLTFTRKAAGELASRLQKSLAILNSYTGDVLSPEIDVL---------------- 106 Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 T ++F +I Q L + + ++ +++ + + L Sbjct: 107 --------------TYNSFANSIYQDNALLLDHPVPYTAIEDSEAQLI----ARRLLVEH 148 Query: 181 MLDNNE--ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWR 230 LD +E E L +D ++ L+ N+ A + I F ++ Sbjct: 149 GLDEDEPSETIDNLASSLIKLDDAIVDNLLDLGELNQFASEFIEFVGAFDAP 200 >gi|307245198|ref|ZP_07527289.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254145|ref|ZP_07535990.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306853842|gb|EFM86056.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862845|gb|EFM94794.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] Length = 1202 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 10/174 (5%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 +A + A+AG+GKT + LRLLL A+ +L +T TKAA E+ R+ I Sbjct: 12 NCTALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNI 71 Query: 87 TAWSHLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 A E + + + +A L + TIH+FC+ Sbjct: 72 KACRRFLQEYDAEKSYDANDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIHSFCQK 131 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 ++ QF ++ + F + L+ + + A E L Sbjct: 132 MLFQFAFDSGM--RFDNDLQPDESDLLRRLSEEVWREMFYPMGLTETAAVAEYL 183 >gi|118467070|ref|YP_883295.1| superfamily protein I DNA and RNA helicases [Mycobacterium avium 104] gi|118168357|gb|ABK69254.1| superfamily protein I DNA and RNA helicases [Mycobacterium avium 104] Length = 1096 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 22/164 (13%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 S +E + + L T+ + + + P V A AG+GKT + RV+ L+ AHP Sbjct: 6 SPRELACALGLFPPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLIANGYAHPGQ 65 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L LT T+ AA ++ RV + + + L A P + + Sbjct: 66 VLGLTFTRKAAGQLLRRVRSRLARLAGVG---LGAASPNHGAVDPEAAPV---------- 112 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 V T HAF ++++ + L + + E + +L Sbjct: 113 --------VSTYHAFAGSLLRDYGLLLPVEPDTRLLSETELWQL 148 >gi|269960508|ref|ZP_06174880.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834585|gb|EEZ88672.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 1212 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 11/128 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA AE+ R+ Sbjct: 22 LIEASAGTGKTFTIAGLYLRLLLGHGTTDTKHHVPLTVDQILVVTFTEAATAELRDRIRA 81 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I S + IQ D +A +L+ V TIH FC+ ++ Sbjct: 82 RIHDARIAFARGQSLDPV-IQPLLEEVEDHKQAAEILLQAERQMDEAAVYTIHGFCQRML 140 Query: 145 QQFPLEAN 152 Q E+ Sbjct: 141 TQNAFESG 148 >gi|261749252|ref|YP_003256937.1| putative helicase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497344|gb|ACX83794.1| putative helicase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 855 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 12/154 (7%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPS---TLLCLTHTKAAAAEMSHRVLEII 86 P+ +A+AGSGKT LV+ L LLL + HP +L +T T A+ E+ R+L+ I Sbjct: 9 PSTLKIYNASAGSGKTFFLVKNYLYLLLKSPHPEEFKRILAITFTNKASEEIKKRILQCI 68 Query: 87 TAWSHLSDEILSAEITKIQGKKP---NKSDMSKARHLLITILETPGGLKVQTIHAFCEAI 143 +S+ + K +++++L IL+ + TI F Sbjct: 69 KEFSNQKIRKEYHFLFDHLTKSLKLTKDQLFERSKNILYAILDDFSSFSISTIDKFTYRT 128 Query: 144 MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 ++ F + NI E +KK + E L Sbjct: 129 IRSFLYKKNIN------LEMDAKKFLWELVDKLL 156 >gi|309789677|ref|ZP_07684258.1| UvrD/REP helicase [Oscillochloris trichoides DG6] gi|308228413|gb|EFO82060.1| UvrD/REP helicase [Oscillochloris trichoides DG6] Length = 641 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 47/132 (35%), Gaps = 38/132 (28%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 L S ++ P V A AGSGKT +L R+ L+ A PS +L LT T AA Sbjct: 4 LRSLNPEQRAAVLAPVGPVLVRAGAGSGKTRVLTLRIAHLISIGAKPSQILALTFTNKAA 63 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + + A + GL T Sbjct: 64 REMRERLRKQLGAGAR--------------------------------------GLVAGT 85 Query: 136 IHAFCEAIMQQF 147 HA C I+++ Sbjct: 86 FHAVCVRILREM 97 >gi|167625835|ref|YP_001676129.1| ATP-dependent DNA helicase Rep [Shewanella halifaxensis HAW-EB4] gi|167355857|gb|ABZ78470.1| ATP-dependent DNA helicase Rep [Shewanella halifaxensis HAW-EB4] Length = 671 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 61/168 (36%), Gaps = 43/168 (25%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 + V A AGSGKT +++ ++ L+ + +T T AA EM RV + + Sbjct: 15 SGPCLVLAGAGSGKTRVIINKIAYLVEKCGYKARNIAAVTFTNKAAREMKERVSQSMGR- 73 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 +AR GL + T H I+++ Sbjct: 74 -------------------------KEAR-----------GLWISTFHTLGLEIIKREHK 97 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 + F++ D++ + L++E + L D +++L K + Sbjct: 98 VVGLKPGFSLFDDQDTFALLKELTQDEL-----DEDKDLLKLLASTIS 140 >gi|51246731|ref|YP_066615.1| ATP-dependent DNA helicase UvrD [Desulfotalea psychrophila LSv54] gi|50877768|emb|CAG37608.1| Probable ATP-dependent DNA helicase, UvrD/REP family [Desulfotalea psychrophila LSv54] Length = 733 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 56/172 (32%), Gaps = 38/172 (22%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST 64 N IDL ++ L + V A AGSGKT L+ RV LL P + Sbjct: 7 NFATADPSPIDLSGLNPAQHLAVTTTEGPVLVIAGAGSGKTRTLIYRVAHLLDKGVAPES 66 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L LT T+ A+ EM R E++ Sbjct: 67 ILLLTFTRKASQEMVWRAGELLG------------------------------------- 89 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 E + T H +++Q+ F I D ++ +I K S Sbjct: 90 -ENCSRVMGGTFHGVANMLLRQYGSHMGWGKGFTIIDRADAEGIINLLKSSL 140 >gi|323493181|ref|ZP_08098311.1| ATP-dependent DNA helicase Rep [Vibrio brasiliensis LMG 20546] gi|323312528|gb|EGA65662.1| ATP-dependent DNA helicase Rep [Vibrio brasiliensis LMG 20546] Length = 672 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 44/186 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 ++ + E + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 3 LNPNQDEAVKYV--SGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + + GL V T Sbjct: 61 REMKERVGQTLGK-------------------------------------QEAKGLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E + L + + L++ I Sbjct: 84 FHTLGLNIIKREYKALGLKAGFSLFDDQDQMALLKELTEKQLD----GDKDLLRQLLSTI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|311111762|ref|YP_003982984.1| UvrD/REP helicase family protein [Rothia dentocariosa ATCC 17931] gi|310943256|gb|ADP39550.1| UvrD/REP helicase family protein [Rothia dentocariosa ATCC 17931] Length = 1449 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 64/170 (37%), Gaps = 23/170 (13%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 S +E + + L T + + P V A AGSGKT +V RV+ L+ Sbjct: 38 SAREIAHALGLNPPTDEQVRIIESPLEPRLVIAGAGSGKTATMVDRVVWLVANKIVRADE 97 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T+ AA E+ R+ + + LS E +P Sbjct: 98 VLGVTFTRKAAGELRDRMRTRLNILRERNLIELSEEELLAGSSEP--------------- 142 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 V T H++ +++++ L + + + Q+ +L + + Sbjct: 143 -------TVSTYHSYANNLVKEYGLRLGVEQDAQMLGDAQAWQLAAQIVQ 185 >gi|121610666|ref|YP_998473.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2] gi|121555306|gb|ABM59455.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2] Length = 1142 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 38/155 (24%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 ++ ++ A+ + + A G+GKT LV+R+ LL P+T+L LT + AA Sbjct: 199 LTPDPTQAQAAAHRGLAFQLQAGPGTGKTRTLVRRIEGLLADGVDPTTILVLTFSNKAAN 258 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R+ + + + T Sbjct: 259 ELCERIAASNPVAAAA--------------------------------------MWIGTF 280 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 HAF I+++F + + D ++ +L+E+ Sbjct: 281 HAFGLDIVRRFHDRLALLPDPRLIDRTEAIELLED 315 >gi|283476651|emb|CAY72479.1| ATP-dependent DNA helicase RepA [Erwinia pyrifoliae DSM 12163] Length = 697 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T A+ EM R Sbjct: 31 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAYLIRECGYQARHIAAVTFTNKASREMKER 90 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 91 VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 113 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D++ L+++ + L ++ L++ I ND Sbjct: 114 EIIKREYAALGMKSNFSLFDDQDQLALLKDLTEQWLE----NDKNLLQQLVSTISNWKND 169 Query: 202 E-DIETLISDIISNRTAL 218 D + +S R L Sbjct: 170 LMDPPRAAAGALSERDKL 187 >gi|330429634|gb|AEC20968.1| ATP-dependent DNA helicase [Pusillimonas sp. T7-7] Length = 717 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 40/161 (24%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 ++ + + +L D V A AGSGKT ++ Q++ LL ++ LT T AA Sbjct: 13 MNAMQRQAVLYLD--GPCLVLAGAGSGKTRVITQKIAYLLRECGYQARQVVALTFTNKAA 70 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EMS RV +++ + GL V T Sbjct: 71 REMSERVKQLVDG-------------------------------------KLAKGLTVST 93 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ +++ + A + F+I D + +I+E +T Sbjct: 94 FHSLGLRFLREEAVHAGLKPQFSILDSNDALAIIQELLATT 134 >gi|213582726|ref|ZP_03364552.1| DNA-dependent helicase II [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 433 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 43/159 (27%) Query: 48 LVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQG 106 LV R+ LL + N P +++ +T T AAAEM HR+ +++ Sbjct: 2 LVHRIAWLLSVENNSPYSIMAVTFTNKAAAEMRHRIGQLMGT------------------ 43 Query: 107 KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSK 166 + GG+ V T H +++ ++AN+ F I D E Sbjct: 44 --------------------SQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQM 83 Query: 167 KLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 +L+ K + ++ LD + + + DE + Sbjct: 84 RLL----KRLIKAMNLDEKQWPPRQAMWYINSQKDEGLR 118 >gi|28493486|ref|NP_787647.1| DNA helicase II [Tropheryma whipplei str. Twist] gi|28476528|gb|AAO44616.1| putative DNA helicase II [Tropheryma whipplei str. Twist] Length = 973 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 94/232 (40%), Gaps = 37/232 (15%) Query: 2 IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA- 60 + + ++L + T+ ++ + P +A V A AGSGKT LV R+L L+ + Sbjct: 3 MSLRDSRHMCSILNLHAPTEEQRAIIESPLENALVIAGAGSGKTETLVLRLLWLIASGKL 62 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 P +++ LT T+ AA E++ R+ + + + + ++LS EI + Sbjct: 63 KPESIMGLTFTRKAAGELASRLQKSLAILNSYTGDVLSPEIDVL---------------- 106 Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 T ++F +I Q L + + ++ +++ + + L Sbjct: 107 --------------TYNSFANSIYQDNALLLDHPVPYTAIEDSEAQLI----ARRLLVEH 148 Query: 181 MLDNNE--ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWR 230 LD +E E L +D ++ L+ N+ A + I F ++ Sbjct: 149 GLDEDEPSETIDNLASSLIKLDDAIVDNLLDLGELNQFASEFIEFVGAFDAP 200 >gi|253690376|ref|YP_003019566.1| ATP-dependent DNA helicase Rep [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756954|gb|ACT15030.1| ATP-dependent DNA helicase Rep [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 675 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 71/208 (34%), Gaps = 43/208 (20%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ + +T T AA EM Sbjct: 4 NPSQQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQARHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + GL + T H Sbjct: 64 KERVAQTLGRKETR-------------------------------------GLMIATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + S+F++ D++ L++E L L+N++ L + + Sbjct: 87 LGLEIIKREYAALGMKSNFSLFDDQDQMALLKE-----LTEQWLENDKVLLQQLISTISN 141 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFS 226 ++ I+ + + KL +S Sbjct: 142 WKNDLIDPAGAAATARSERDKLFVHCYS 169 >gi|238798859|ref|ZP_04642327.1| ATP-dependent DNA helicase rep [Yersinia mollaretii ATCC 43969] gi|238717309|gb|EEQ09157.1| ATP-dependent DNA helicase rep [Yersinia mollaretii ATCC 43969] Length = 673 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 61/183 (33%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ P + +T T AA EM Sbjct: 4 NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + GL + T H Sbjct: 64 KERVAQTLGRKESR-------------------------------------GLMIATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + S+F++ D + L+++ L D+ L++ I Sbjct: 87 LGLEIIKKEYAALGMKSNFSLFDAQDQLGLLKDLTHKWLE----DDKTLLQQLISAISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|163802159|ref|ZP_02196054.1| ATP-dependent DNA helicase Rep [Vibrio sp. AND4] gi|159173964|gb|EDP58774.1| ATP-dependent DNA helicase Rep [Vibrio sp. AND4] Length = 671 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 61/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGKAESK-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H +I+++ + + F++ D++ L++E + L + + L++ I Sbjct: 84 FHTLGLSIIKREYKHLGLKAGFSLFDDQDQLALLKELTEKQLD----GDKDLLRQLLSCI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|303249732|ref|ZP_07335936.1| exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251919|ref|ZP_07533820.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651299|gb|EFL81451.1| exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860611|gb|EFM92623.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 1202 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 10/174 (5%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 +A + A+AG+GKT + LRLLL A+ +L +T TKAA E+ R+ I Sbjct: 12 NCTALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNI 71 Query: 87 TAWSHLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 A E + + + +A L + TIH+FC+ Sbjct: 72 KACRRFLQEYDAEKSYDANDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIHSFCQK 131 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 ++ QF ++ + F + L+ + + A E L Sbjct: 132 MLFQFAFDSGM--RFDNDLQPDESDLLRRLSEEVWREMFYPMGLTETAAVAEYL 183 >gi|261823432|ref|YP_003261538.1| ATP-dependent DNA helicase Rep [Pectobacterium wasabiae WPP163] gi|261607445|gb|ACX89931.1| ATP-dependent DNA helicase Rep [Pectobacterium wasabiae WPP163] Length = 673 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 71/208 (34%), Gaps = 43/208 (20%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ + +T T AA EM Sbjct: 4 NPSQQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQARHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + GL + T H Sbjct: 64 KERVAQTLGRKETR-------------------------------------GLMIATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + S+F++ D++ L++E L L+N++ L + + Sbjct: 87 LGLEIIKREYAALGMKSNFSLFDDQDQIALLKE-----LTEQWLENDKVLLQQLISTISN 141 Query: 199 SNDEDIETLISDIISNRTALKLIFFFFS 226 ++ I+ + + KL +S Sbjct: 142 WKNDLIDPAGAAATARSERDKLFVHCYS 169 >gi|37678224|ref|NP_932833.1| ATP-dependent DNA helicase Rep [Vibrio vulnificus YJ016] gi|37196963|dbj|BAC92804.1| ATP-dependent DNA helicase Rep [Vibrio vulnificus YJ016] Length = 672 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGKGESK-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + S F++ D++ L++E + L + + L++ I Sbjct: 84 FHTLGLNIIKREYRHLGLKSGFSLFDDQDQLALLKELTEKQLD----GDKDLLRQLMSTI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|330721132|gb|EGG99258.1| ATP-dependent DNA helicase Rep [gamma proteobacterium IMCC2047] Length = 672 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 54/159 (33%), Gaps = 38/159 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 + K +QL + V A AGSGKT ++ ++ L+ A + +T T A Sbjct: 1 MSKLNKQQQLAIITNDKPLLVLAGAGSGKTTVITHKIAHLVNKAGIEARHIYAVTFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV + + +T + V Sbjct: 61 AREMKERVAKQLKG-------------------------------------DTAKAISVS 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T H I+++ +I F++ D + LI+E Sbjct: 84 TFHNLGLTIIRKEYKHLDIKPGFSLFDAHDALTLIKELI 122 >gi|260775078|ref|ZP_05883977.1| ATP-dependent DNA helicase Rep [Vibrio coralliilyticus ATCC BAA-450] gi|260608995|gb|EEX35155.1| ATP-dependent DNA helicase Rep [Vibrio coralliilyticus ATCC BAA-450] Length = 672 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 63/186 (33%), Gaps = 44/186 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 ++ + E + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 3 LNPNQDEAVKYV--SGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGKNESK-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + S F++ D++ L++E + L + + L++ I Sbjct: 84 FHTLGLNIIKREYKALGLKSGFSLFDDQDQLALLKELTEKQLD----GDKDLLRQLLSTI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|309780454|ref|ZP_07675203.1| ATP-dependent DNA helicase Rep [Ralstonia sp. 5_7_47FAA] gi|308920782|gb|EFP66430.1| ATP-dependent DNA helicase Rep [Ralstonia sp. 5_7_47FAA] Length = 706 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 30/142 (21%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 V A AGSGKT ++ Q++ L+L P + +T T AA EM RV +++ Sbjct: 21 DGPCLVLAGAGSGKTRVITQKIAHLILDKGFEPKHIAAVTFTNKAAKEMQERVAKLMDGK 80 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + + + + L V T H+ I++ Sbjct: 81 TREDGKRIPIK-----------------------------QLTVCTFHSLGVQILRAEAE 111 Query: 150 EANITSHFAIADEEQSKKLIEE 171 + F+I D + +I+E Sbjct: 112 HVGLKPRFSIMDSDDCFGMIQE 133 >gi|90416555|ref|ZP_01224486.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium HTCC2207] gi|90331754|gb|EAS46982.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium HTCC2207] Length = 676 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 57/169 (33%), Gaps = 40/169 (23%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAA 76 S +Q V A AGSGKT ++ Q++ L+ + +T T AA Sbjct: 4 SLNPQQQAALKYIDGPLLVLAGAGSGKTSVITQKIAYLVEECGIPARNIAAVTFTNKAAR 63 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM RV +++ GL V T Sbjct: 64 EMKARVASLLSGADGR-------------------------------------GLTVSTF 86 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE--AKKSTLASIMLD 183 H I++ F+I D+E + L++E A+ + L ++D Sbjct: 87 HNLGLNIIRSEIKALGFKPGFSILDQEDCRNLLKELLARNTELDEKLID 135 >gi|261250075|ref|ZP_05942652.1| ATP-dependent DNA helicase Rep [Vibrio orientalis CIP 102891] gi|260939579|gb|EEX95564.1| ATP-dependent DNA helicase Rep [Vibrio orientalis CIP 102891] Length = 671 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 61/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + ++ + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPNQDAAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGKNESK-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + S F++ D++ L++E + L + + L++ I Sbjct: 84 FHTLGLNIIKREYKALGLKSGFSLFDDQDQMALLKELTEKQLD----GDKDLLRQLLSTI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|253996605|ref|YP_003048669.1| UvrD/REP helicase [Methylotenera mobilis JLW8] gi|253983284|gb|ACT48142.1| UvrD/REP helicase [Methylotenera mobilis JLW8] Length = 672 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 59/171 (34%), Gaps = 40/171 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 ++ ++ + E + D V A AGSGKT ++ Q++ L+ P + +T T Sbjct: 1 MLNSMNSPQREAVKYLD--GPLLVLAGAGSGKTRVITQKISYLINEAGYAPKEIAAITFT 58 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV +++ GL Sbjct: 59 NKAALEMQERVGKLMQGT-------------------------------------NIKGL 81 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 + T H+ +++ F+I D S K++ + +T ++ Sbjct: 82 TIATFHSLGLQMLRAEATLLGYKPQFSILDSSDSFKILADVLATTDKQLLR 132 >gi|315656388|ref|ZP_07909277.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492947|gb|EFU82549.1| UvrD/REP helicase subfamily [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 1191 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 79/196 (40%), Gaps = 11/196 (5%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 T+ + + + P V A AGSGKT + R++ ++ P +L LT T+ AAAE Sbjct: 25 PTREQSAVITAPRGQLLVVAGAGSGKTETIANRLVYWVVNAGIVPEAILGLTFTRKAAAE 84 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGK--KPNKSDMSKARHLLITILETP------- 128 M+ R + ++ L + + T K D+++ R T+++ Sbjct: 85 MAARFSLRLDRFASLLESVQERRQTAEVNAVLKAADFDLNQLRQRFDTLVQRGMTSEMLR 144 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + V T ++ ++ +F S F + +++ + + ++ E Sbjct: 145 HPVSVSTYDSYAGTLLTEFGTLVGRESGFTTITDAARYQIMTDVVQIWTGALGTKREGEN 204 Query: 189 KKAFYE-ILEISNDED 203 + +L ++ND + Sbjct: 205 AENLVNILLSLANDTN 220 >gi|315181034|gb|ADT87948.1| exodeoxyribonuclease V, beta subunit [Vibrio furnissii NCTC 11218] Length = 1214 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 11/128 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTFTIAGLYLRLLLGHGSEHTRHASALTVDQILVVTFTEAATAELRDRIRA 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I + L+ ++ IQ D A LL+ V TIH FC+ ++ Sbjct: 84 RIHD-ARLAFSRGKSDDPVIQPLLAEFVDHPLATRLLLNAERQMDEAAVYTIHGFCQRML 142 Query: 145 QQFPLEAN 152 Q E+ Sbjct: 143 TQNAFESG 150 >gi|239929059|ref|ZP_04686012.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672] Length = 374 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 62/182 (34%), Gaps = 31/182 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T A Sbjct: 16 GIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGRVAPEQVLGLTFTNKA 75 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E++ RV + + +++ + PG + Sbjct: 76 AGELAERVRKALIKAGVTDPDVIDPD-------------------------NPPGEPVIS 110 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HAF ++ L + + + +L + L ++F + Sbjct: 111 TYHAFAGRLLTDHGLRIGLEPSSRLLADATRYQLAARVLRE-----APGPYPALTRSFPD 165 Query: 195 IL 196 ++ Sbjct: 166 LV 167 >gi|238880904|gb|EEQ44542.1| conserved hypothetical protein [Candida albicans WO-1] Length = 864 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 85/215 (39%), Gaps = 38/215 (17%) Query: 2 IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANA 60 + S Q + ++ ++ + + + A R + A G+GKT +L+ RV LL+ N Sbjct: 1 MMSTSNQVLDKILESLNANQRKAVTAPCNGR-LQIIAGPGTGKTKVLISRVAYLLISENI 59 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 P ++ T TK AA EM R+ +++ D+++ Sbjct: 60 RPDNMIVTTFTKRAANEMIERLTKLVEGTDINIDKLI----------------------- 96 Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 + T H+ C I++++ ++ ++ IADE +++ + A Sbjct: 97 ------------IGTFHSICFRIIKKYGKLIDLE-NYTIADERDKSYILKTMLTNLSAKD 143 Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215 + + +++ ++ +E L +IS + Sbjct: 144 IERLDSFGEESLQKLRSQKANEKYHGLDLSVISKK 178 >gi|190149661|ref|YP_001968186.1| exodeoxyribonuclease V subunit beta [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307260844|ref|ZP_07542530.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262969|ref|ZP_07544591.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914792|gb|ACE61044.1| exodeoxyribonuclease V beta chain [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306869411|gb|EFN01202.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871595|gb|EFN03317.1| Exodeoxyribonuclease V, beta subunit [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 1202 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 10/174 (5%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 +A + A+AG+GKT + LRLLL A+ +L +T TKAA E+ R+ I Sbjct: 12 NCTALIEASAGTGKTFTMANLYLRLLLGVGCASLTVEQILVVTFTKAATEELRDRIRRNI 71 Query: 87 TAWSHLSDEILSAEITKIQG----KKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 A E + + + +A L + TIH+FC+ Sbjct: 72 KACRRFLQEYDAEKSYDANDFFFQLHQQIESVEEAILRLRIAEREIDLASIFTIHSFCQK 131 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 ++ QF ++ + F + L+ + + A E L Sbjct: 132 MLFQFAFDSGM--RFDNDLQPDESDLLRRLSEEVWREMFYPVGLTETAAVAEYL 183 >gi|156975569|ref|YP_001446476.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Vibrio harveyi ATCC BAA-1116] gi|156527163|gb|ABU72249.1| hypothetical protein VIBHAR_03301 [Vibrio harveyi ATCC BAA-1116] Length = 1212 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 11/128 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA AE+ R+ Sbjct: 22 LIEASAGTGKTFTIAGLYLRLLLGHGTANTKHRVPLTVDQILVVTFTEAATAELRDRIRA 81 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I S++ IQ D +A +L+ V TIH FC+ ++ Sbjct: 82 RIHDARIAFARGKSSDPV-IQPLLGEIEDHKQAAEILLQAERQMDEAAVYTIHGFCQRML 140 Query: 145 QQFPLEAN 152 Q E+ Sbjct: 141 TQNAFESG 148 >gi|127511239|ref|YP_001092436.1| ATP-dependent DNA helicase Rep [Shewanella loihica PV-4] gi|126636534|gb|ABO22177.1| ATP-dependent DNA helicase Rep [Shewanella loihica PV-4] Length = 670 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 43/168 (25%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 + V A AGSGKT +++ ++ L+ + +T T AA EM RV + + Sbjct: 15 SGPCLVLAGAGSGKTRVIINKIAYLVQKCGYQARNIAAVTFTNKAAREMKERVAQSMGR- 73 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 +AR GL + T H I+++ Sbjct: 74 -------------------------KEAR-----------GLWISTFHTLGLEIIKREYK 97 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 + F++ D++ + L++E L D +++L + + Sbjct: 98 VVGLKPGFSLFDDQDTLALLKE-----LTEKEFDGDKDLLRMLMTAIS 140 >gi|258622035|ref|ZP_05717063.1| ATP-dependent DNA helicase Rep [Vibrio mimicus VM573] gi|258625852|ref|ZP_05720727.1| ATP-dependent DNA helicase Rep [Vibrio mimicus VM603] gi|258581816|gb|EEW06690.1| ATP-dependent DNA helicase Rep [Vibrio mimicus VM603] gi|258585688|gb|EEW10409.1| ATP-dependent DNA helicase Rep [Vibrio mimicus VM573] Length = 678 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 8 MKLNPRQDEAVKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 67 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 68 REMKERVAQTLGKAESR-------------------------------------GLMVST 90 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + + F++ D++ L++E L LD +++L + Sbjct: 91 FHTLGLNIIRREYKQLGLKAGFSLFDDQDQMALLKE-----LTEKQLDGDKDLLRLLLST 145 Query: 196 LE 197 + Sbjct: 146 IS 147 >gi|323499832|ref|ZP_08104791.1| exodeoxyribonuclease V beta chain [Vibrio sinaloensis DSM 21326] gi|323315073|gb|EGA68125.1| exodeoxyribonuclease V beta chain [Vibrio sinaloensis DSM 21326] Length = 1206 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 11/128 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA AE+ R+ Sbjct: 22 LIEASAGTGKTFTIAGLYLRLLLGHGSAETRHQAPLTVDQILVVTFTEAATAELRDRIRA 81 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I A + L+ S+ I D +A +L+ V TIH FC+ ++ Sbjct: 82 RIHA-ARLAFSRGSSHDPVIAPLLEEMPDHKQAAEVLLQAERQMDEAAVYTIHGFCQRML 140 Query: 145 QQFPLEAN 152 Q E+ Sbjct: 141 TQNAFESG 148 >gi|262273633|ref|ZP_06051447.1| ATP-dependent DNA helicase Rep [Grimontia hollisae CIP 101886] gi|262222611|gb|EEY73922.1| ATP-dependent DNA helicase Rep [Grimontia hollisae CIP 101886] Length = 672 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 69/205 (33%), Gaps = 45/205 (21%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + ++ + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPAQNDAVHHVSGPCLVLAGAGSGKTRVITNKIAYLVQHCGYKARHIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + ++ GL V T Sbjct: 61 REMKERVGQTLSRQETR-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L+++ L LD +++L + Sbjct: 84 FHTLGLNIIRREYKSLGLKAGFSLFDDQDQIALLKD-----LTEKELDGDKDLLRLLLHT 138 Query: 196 LEISNDEDI--ETLISDIISNRTAL 218 + ++ + + S + R L Sbjct: 139 ISNWKNDMLTPQQAQSAAMGERDQL 163 >gi|260771453|ref|ZP_05880378.1| exodeoxyribonuclease V beta chain [Vibrio furnissii CIP 102972] gi|260613579|gb|EEX38773.1| exodeoxyribonuclease V beta chain [Vibrio furnissii CIP 102972] Length = 1214 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 11/128 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA AE+ R+ Sbjct: 24 LIEASAGTGKTFTIAGLYLRLLLGHGSEHTRHASALTVDQILVVTFTEAATAELRDRIRA 83 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I + L+ ++ IQ D A LL+ V TIH FC+ ++ Sbjct: 84 RIHD-ARLAFSRGKSDDPVIQPLLAEFVDHPLATRLLLNAERQMDEAAVYTIHGFCQRML 142 Query: 145 QQFPLEAN 152 Q E+ Sbjct: 143 TQNAFESG 150 >gi|187930550|ref|YP_001901037.1| UvrD/REP helicase [Ralstonia pickettii 12J] gi|187727440|gb|ACD28605.1| UvrD/REP helicase [Ralstonia pickettii 12J] Length = 706 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 30/142 (21%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 V A AGSGKT ++ Q++ L+L P + +T T AA EM RV +++ Sbjct: 21 DGPCLVLAGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDGK 80 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 + + + + L V T H+ I++ Sbjct: 81 TREDGKRIPIK-----------------------------QLTVCTFHSLGVQILRTEAE 111 Query: 150 EANITSHFAIADEEQSKKLIEE 171 + F+I D + +I+E Sbjct: 112 HVGLKPRFSIMDSDDCFGMIQE 133 >gi|260912802|ref|ZP_05919288.1| ATP-dependent helicase PcrA [Pasteurella dagmatis ATCC 43325] gi|260633180|gb|EEX51345.1| ATP-dependent helicase PcrA [Pasteurella dagmatis ATCC 43325] Length = 671 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 62/186 (33%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNSQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLVEKCGYLPRQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + I E GL V T Sbjct: 61 REMKERVAQSIGK-------------------------------------EASRGLIVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S+ + DE L++E L+ ++ + L++ I Sbjct: 84 FHTLGFDIIKREYKHLGFKSNMTLFDEHDQLALLKELTADLLS----EDKDLLRELISTI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|117618529|ref|YP_858660.1| ATP-dependent DNA helicase Rep [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559936|gb|ABK36884.1| ATP-dependent DNA helicase Rep [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 670 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + ++ + V A AGSGKT ++ ++ L+ + + +T T AA Sbjct: 1 MKLNPNQNEAVKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYNARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + +AR GL V T Sbjct: 61 REMKERVGQTLGR--------------------------KEAR-----------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H ++++ N+ ++F++ D+ L++E ++ L ++ ++L +I Sbjct: 84 FHTLGLEVIRREHKSLNLKANFSLFDDTDQLALLKELTEAELD----NDKDKLSALISQI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|290957554|ref|YP_003488736.1| ATP-dependent DNA helicase [Streptomyces scabiei 87.22] gi|260647080|emb|CBG70179.1| putative ATP-dependent DNA helicase [Streptomyces scabiei 87.22] Length = 1223 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 31/182 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 I T + P + A AGSGKT ++ RV+ L+ P +L LT T A Sbjct: 26 GIPFTPEQTACIIAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 85 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E++ RV + + +++ + PG + Sbjct: 86 AGELAERVRKALVRAGITDPDVIDPD-------------------------HPPGEPVIS 120 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HAF ++ L + + + +L + L ++F + Sbjct: 121 TYHAFAGRLLTDHGLRIGLEPTSRLLADATRYQLAARVLRE-----SPGPYPALTRSFPD 175 Query: 195 IL 196 ++ Sbjct: 176 LV 177 >gi|255348990|ref|ZP_05380997.1| DNA helicase [Chlamydia trachomatis 70] gi|255503529|ref|ZP_05381919.1| DNA helicase [Chlamydia trachomatis 70s] gi|255507207|ref|ZP_05382846.1| DNA helicase [Chlamydia trachomatis D(s)2923] gi|296435215|gb|ADH17393.1| DNA helicase [Chlamydia trachomatis E/150] gi|296438934|gb|ADH21087.1| DNA helicase [Chlamydia trachomatis E/11023] Length = 634 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 38/163 (23%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 L S+ + Q+ A + P + V A AG+GKT ++ R+L L+ + P +L +T T Sbjct: 2 LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILHLIEESRLDPKQILAITFTNK 61 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA E+ RV + + V Sbjct: 62 AANELKERVQSQCRELGYSDVPM------------------------------------V 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I+++ + S+F I D+ S+K I++ + Sbjct: 86 STFHSLSVYILRRSIHLLDRQSNFVIYDQSDSEKSIKQCLRKL 128 >gi|320154905|ref|YP_004187284.1| ATP-dependent DNA helicase Rep [Vibrio vulnificus MO6-24/O] gi|326423797|ref|NP_760033.2| ATP-dependent DNA helicase Rep [Vibrio vulnificus CMCP6] gi|319930217|gb|ADV85081.1| ATP-dependent DNA helicase Rep [Vibrio vulnificus MO6-24/O] gi|319999164|gb|AAO09560.2| ATP-dependent DNA helicase Rep [Vibrio vulnificus CMCP6] Length = 672 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGKGESK-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + S F++ D++ L++E + L + + L++ I Sbjct: 84 FHTLGLNIIKREYRHLGLKSGFSLFDDQDQLALLKELTEKQLD----GDKDLLRQLMSTI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|226946792|ref|YP_002801865.1| ATP-dependent DNA helicase Rep protein [Azotobacter vinelandii DJ] gi|226721719|gb|ACO80890.1| ATP-dependent DNA helicase Rep protein [Azotobacter vinelandii DJ] Length = 669 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 62/202 (30%), Gaps = 59/202 (29%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVTYVGGPLLVLAGAGSGKTSVITRKIAYLIQHCGIQARHIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 65 KERVGSLLRGAEGK-------------------------------------GLTVSTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ F+I DE K L+ + + E Sbjct: 88 LGLNIIRREHARLGYKPGFSIFDEGDIKTLVADIMQK---------------------EY 126 Query: 199 SNDEDIETLISDIISNRTALKL 220 + D+ + +I I + + L L Sbjct: 127 AGDDGADQVIQQIGAWKNDLIL 148 >gi|51594519|ref|YP_068710.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis IP 32953] gi|108806144|ref|YP_650060.1| ATP-dependent DNA helicase Rep [Yersinia pestis Antiqua] gi|108810257|ref|YP_646024.1| ATP-dependent DNA helicase Rep [Yersinia pestis Nepal516] gi|145600739|ref|YP_001164815.1| ATP-dependent DNA helicase Rep [Yersinia pestis Pestoides F] gi|153997074|ref|ZP_02022207.1| ATP-dependent DNA helicase Rep [Yersinia pestis CA88-4125] gi|162419101|ref|YP_001605104.1| ATP-dependent DNA helicase Rep [Yersinia pestis Angola] gi|165926312|ref|ZP_02222144.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis str. F1991016] gi|165939683|ref|ZP_02228226.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis str. IP275] gi|166009458|ref|ZP_02230356.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Antiqua str. E1979001] gi|166213533|ref|ZP_02239568.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Antiqua str. B42003004] gi|167402081|ref|ZP_02307560.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420825|ref|ZP_02312578.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425939|ref|ZP_02317692.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468461|ref|ZP_02333165.1| ATP-dependent DNA helicase Rep [Yersinia pestis FV-1] gi|170026248|ref|YP_001722753.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis YPIII] gi|218930873|ref|YP_002348748.1| ATP-dependent DNA helicase Rep [Yersinia pestis CO92] gi|229837205|ref|ZP_04457370.1| ATP-dependent DNA helicase Rep [Yersinia pestis Pestoides A] gi|229839567|ref|ZP_04459726.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis str. PEXU2] gi|229900129|ref|ZP_04515266.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis str. India 195] gi|229900424|ref|ZP_04515553.1| ATP-dependent DNA helicase Rep [Yersinia pestis Nepal516] gi|270488781|ref|ZP_06205855.1| ATP-dependent DNA helicase Rep [Yersinia pestis KIM D27] gi|294505534|ref|YP_003569596.1| ATP-dependent DNA helicase Rep [Yersinia pestis Z176003] gi|51587801|emb|CAH19403.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis IP 32953] gi|108773905|gb|ABG16424.1| ATP-dependent DNA helicase Rep [Yersinia pestis Nepal516] gi|108778057|gb|ABG12115.1| ATP-dependent DNA helicase Rep [Yersinia pestis Antiqua] gi|115349484|emb|CAL22458.1| ATP-dependent DNA helicase Rep [Yersinia pestis CO92] gi|145212435|gb|ABP41842.1| ATP-dependent DNA helicase Rep [Yersinia pestis Pestoides F] gi|149289380|gb|EDM39458.1| ATP-dependent DNA helicase Rep [Yersinia pestis CA88-4125] gi|162351916|gb|ABX85864.1| ATP-dependent DNA helicase Rep [Yersinia pestis Angola] gi|165912373|gb|EDR31007.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis str. IP275] gi|165921836|gb|EDR39033.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis str. F1991016] gi|165991380|gb|EDR43681.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Antiqua str. E1979001] gi|166205206|gb|EDR49686.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Antiqua str. B42003004] gi|166960954|gb|EDR56975.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048555|gb|EDR59963.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055087|gb|EDR64886.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752782|gb|ACA70300.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis YPIII] gi|229682443|gb|EEO78530.1| ATP-dependent DNA helicase Rep [Yersinia pestis Nepal516] gi|229686909|gb|EEO78988.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis str. India 195] gi|229695933|gb|EEO85980.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706148|gb|EEO92157.1| ATP-dependent DNA helicase Rep [Yersinia pestis Pestoides A] gi|262363600|gb|ACY60321.1| ATP-dependent DNA helicase Rep [Yersinia pestis D106004] gi|262367528|gb|ACY64085.1| ATP-dependent DNA helicase Rep [Yersinia pestis D182038] gi|270337285|gb|EFA48062.1| ATP-dependent DNA helicase Rep [Yersinia pestis KIM D27] gi|294355993|gb|ADE66334.1| ATP-dependent DNA helicase Rep [Yersinia pestis Z176003] gi|320013528|gb|ADV97099.1| ATP-dependent DNA helicase Rep [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 673 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ P + +T T AA EM Sbjct: 4 NPSQQEAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR GL + T H Sbjct: 64 KERVAQTLGR--------------------------KEAR-----------GLMIATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + + S+F++ D + L+++ L D+ L++ I Sbjct: 87 LGLEIIKKEYVALGMKSNFSLFDAQDQMGLLKDLTHKWLE----DDKTLLQQLVSAISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|190576450|ref|YP_001974295.1| putative exodeoxyribonuclease V beta chain [Stenotrophomonas maltophilia K279a] gi|190014372|emb|CAQ48020.1| putative exodeoxyribonuclease V beta chain [Stenotrophomonas maltophilia K279a] Length = 1226 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 64/174 (36%), Gaps = 11/174 (6%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 D + LA + A+AG+GKT L RL++ +L +T T A Sbjct: 8 DGSESLSRDPYLALSLEGIRLIEASAGTGKTFTLATLFTRLVVEQGLRIGQILAVTFTDA 67 Query: 74 AAAEMSHRVLEIITAWSHL------SDEILSAEITKIQGKKP---NKSDMSKARHLLITI 124 A E+ R+ E + + L DE +T+ ++ + + L Sbjct: 68 ATQELRKRIRERLALAARLVDLEAADDEAPEVRLTRDVLQRHLQCGTESAAALKRRLQVA 127 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 + + TIH FC ++++ LE+ T ++L+EE Sbjct: 128 ADEIDLASIFTIHGFCTRVLREHALESGHTFDPPELLASD-RELLEELAADLWR 180 >gi|254506751|ref|ZP_05118891.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus 16] gi|219550332|gb|EED27317.1| exodeoxyribonuclease V, beta subunit [Vibrio parahaemolyticus 16] Length = 1194 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 11/128 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA AE+ R+ Sbjct: 10 LIEASAGTGKTFTIAGLYLRLLLGHGSSETQHQTPLTVDQILVVTFTEAATAELRDRIRA 69 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I + L+ IQ D +A ++L+ V TIH FC+ ++ Sbjct: 70 RIHD-ARLAFARGQTHDPVIQPLLEEIDDHKQAANILLQAERQMDEAAVYTIHGFCQRML 128 Query: 145 QQFPLEAN 152 Q E+ Sbjct: 129 TQNAFESG 136 >gi|300714779|ref|YP_003739582.1| ATP-dependent DNA helicase rep [Erwinia billingiae Eb661] gi|299060615|emb|CAX57722.1| ATP-dependent DNA helicase rep [Erwinia billingiae Eb661] Length = 673 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T A+ EM R Sbjct: 7 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKASREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D++ L+++ + L ++ L++ I ND Sbjct: 90 EIIKREYAALGMKSNFSLFDDQDQLALLKDLTEEWLE----NDKTLLQQLISTISNWKND 145 Query: 202 E-DIETLISDIISNRTAL 218 D + +S R L Sbjct: 146 LMDPSRAAAGAVSERDKL 163 >gi|262172724|ref|ZP_06040402.1| ATP-dependent DNA helicase Rep [Vibrio mimicus MB-451] gi|261893800|gb|EEY39786.1| ATP-dependent DNA helicase Rep [Vibrio mimicus MB-451] Length = 671 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 60/182 (32%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVAQTLGKAESR-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + + F++ D++ L++E L LD +++L + Sbjct: 84 FHTLGLNIIRREYKQLGLKAGFSLFDDQDQMALLKE-----LTEKQLDGDKDLLRLLLST 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|325971006|ref|YP_004247197.1| UvrD/REP helicase [Spirochaeta sp. Buddy] gi|324026244|gb|ADY13003.1| UvrD/REP helicase [Spirochaeta sp. Buddy] Length = 672 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 60/184 (32%), Gaps = 39/184 (21%) Query: 13 TIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 ++ + +Q A+ V A AGSGKT +L R+ +L ++L LT T Sbjct: 2 YFNIEKELNDQQCKAAATLYGPLLVIAGAGSGKTRMLTYRIANMLQNGIKEESILALTFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ + Sbjct: 62 NKAAKEMGERIRSLTNLKLKKLTTTT---------------------------------- 87 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 H+F +++Q+ ++F I D LI+E ++ + + EL Sbjct: 88 ----FHSFGMGVLKQYIQYLGFKNNFTIYDTNDRMALIKEVIQNLDYVVETFDLYELSSL 143 Query: 192 FYEI 195 F +I Sbjct: 144 FSDI 147 >gi|186893517|ref|YP_001870629.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis PB1/+] gi|186696543|gb|ACC87172.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis PB1/+] Length = 673 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ P + +T T AA EM Sbjct: 4 NPSQQEAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR GL + T H Sbjct: 64 KERVAQTLGR--------------------------KEAR-----------GLMIATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + + S+F++ D + L+++ L D+ L++ I Sbjct: 87 LGLEIIKKEYVALGMKSNFSLFDAQDQMGLLKDLTHKWLE----DDKTLLQQLVSAISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|118618002|ref|YP_906334.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99] gi|118570112|gb|ABL04863.1| ATP-dependent DNA helicase [Mycobacterium ulcerans Agy99] Length = 1101 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 27/170 (15%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 S E + + + T + + + P V A AG+GKT + RV+ L+ A P Sbjct: 6 SPDEIASALGIFPPTDEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQ 65 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L LT T+ AA ++ RV + + + + + Sbjct: 66 VLGLTFTRKAAGQLLRRVRSRLARLAGT--------------------------TVGVAV 99 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 E G V T HAF ++++ L I + E + +L E Sbjct: 100 GEAAGAPTVSTYHAFAGSLLRDHGLLLPIEPDTRLLSETELWQLAFEVVN 149 >gi|259906859|ref|YP_002647215.1| ATP-dependent DNA helicase Rep [Erwinia pyrifoliae Ep1/96] gi|224962481|emb|CAX53936.1| ATP-dependent DNA helicase Rep [Erwinia pyrifoliae Ep1/96] Length = 673 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T A+ EM R Sbjct: 7 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAYLIRECGYQARHIAAVTFTNKASREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D++ L+++ + L ++ L++ I ND Sbjct: 90 EIIKREYAALGMKSNFSLFDDQDQLALLKDLTEQWLE----NDKNLLQQLVSTISNWKND 145 Query: 202 E-DIETLISDIISNRTAL 218 D + +S R L Sbjct: 146 LMDPPRAAAGALSERDKL 163 >gi|121607593|ref|YP_995400.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2] gi|121552233|gb|ABM56382.1| UvrD/REP helicase [Verminephrobacter eiseniae EF01-2] Length = 697 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 38/152 (25%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 ++ + V A AGSGKT ++ ++ ++ P + +T T AAAEM R Sbjct: 8 AQLRAIHYTDGACLVLAGAGSGKTRVITHKIAHMIERGLEPGRIAAITFTNKAAAEMRER 67 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 +I +A+ +L V T HA Sbjct: 68 ARGLIG---------------------------RRAKEVL-----------VCTFHALGV 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 +++ + F+I D + ++++A Sbjct: 90 RMLRADGARLGLKPQFSILDADDVTGILKDAA 121 >gi|289525651|emb|CBJ15132.1| DNA helicase [Chlamydia trachomatis Sweden2] Length = 634 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 38/163 (23%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKA 73 L S+ + Q+ A + P + V A AG+GKT ++ R+L L+ + P +L +T T Sbjct: 2 LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVTHRILHLIEESRLDPKQILAITFTNK 61 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA E+ RV + + V Sbjct: 62 AANELKERVQSQCRELGYSDVPM------------------------------------V 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I+++ + S+F I D+ S+K I++ + Sbjct: 86 STFHSLSVYILRRSIHLLDRQSNFVIYDQSDSEKSIKQCLRKL 128 >gi|124514841|gb|EAY56353.1| putative UvrD/REP helicase [Leptospirillum rubarum] Length = 649 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 71/204 (34%), Gaps = 40/204 (19%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 S ++++++ + E + A P A V A AGSGKT +L RV LL +L LT Sbjct: 2 DSRILNVLNEEQREAVTA--PDGPALVLAGAGSGKTRVLTHRVAWLLEKGVPAHRMLVLT 59 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 TK AA + HR+ +++T L Sbjct: 60 FTKKAARVLQHRLADLLTGPQVL------------------------------------- 82 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 L T H ++++F + D E L++ + + + + Sbjct: 83 -LWAGTFHHVGYRLLREFGSRIGYAGTPVVIDREDQVDLLKSILSAFPEGLRKELPPAGQ 141 Query: 190 KAFYEILEISNDEDIETLISDIIS 213 L ++ +E +I D S Sbjct: 142 ILNAISLSRNSMVSLEDVIYDRFS 165 >gi|91791771|ref|YP_561422.1| ATP-dependent DNA helicase Rep [Shewanella denitrificans OS217] gi|91713773|gb|ABE53699.1| ATP-dependent DNA helicase Rep [Shewanella denitrificans OS217] Length = 670 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 65/182 (35%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + ++ + V A AGSGKT +++ ++ L+ + +T T AA Sbjct: 1 MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVEKCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + +AR GL + T Sbjct: 61 REMKERVAQSMGR--------------------------KEAR-----------GLWIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ + L+++ L D +++L KA Sbjct: 84 FHTLGLEIIKREYKVLGLKAGFSLFDDQDTLALLKD-----LTEDEFDGDKDLLKALASA 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|37680798|ref|NP_935407.1| ATP-dependent exoDNAse beta subunit [Vibrio vulnificus YJ016] gi|37199547|dbj|BAC95378.1| ATP-dependent exoDNAse beta subunit [Vibrio vulnificus YJ016] Length = 1221 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 14/145 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA E+ R+ Sbjct: 37 LIEASAGTGKTFTIAGLYLRLLLGHGSEETRHQVPLTVDQILVVTFTEAATGELRDRIRA 96 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I + L+ ++ I+ + D +A +L+ V TIH FC+ ++ Sbjct: 97 RIHD-ARLAFARGESQDPVIEPLLRDFPDHKQAAAILLQAERQMDEAAVFTIHGFCQRML 155 Query: 145 QQFPLEAN--ITSHFAIADEEQSKK 167 Q E+ + F + DE Q K Sbjct: 156 TQNAFESGSRFNNEF-VTDESQLKA 179 >gi|315125768|ref|YP_004067771.1| UvrD family helicase [Pseudoalteromonas sp. SM9913] gi|315014282|gb|ADT67620.1| UvrD family helicase [Pseudoalteromonas sp. SM9913] Length = 638 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 85/212 (40%), Gaps = 46/212 (21%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 +IS + S+Q + D + + A+AGSGKT +L +R+ R +L N +L LT T A Sbjct: 1 MISLSPSQQEIVEFDIKSAIQILASAGSGKTRVLTERI-RYILNNTKKDKVLALTFTNKA 59 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ + + V Sbjct: 60 AQEMQERLADFVGVEERT---------------------------------------WVS 80 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIAD-EEQSKKLIEEAKKS---TLASIMLDNNEELKK 190 TIH+ ++I++ + ++S I + ++ +L ++ + + + N+ K+ Sbjct: 81 TIHSVAQSIIESYGHTIGLSSDLHIYERDQDRMELFLQSLRDSNINIDEYLNINDPAEKR 140 Query: 191 AFYEILEISNDEDIETLISDIISNRTALKLIF 222 ++++ D + ++++ R +++ F Sbjct: 141 KRNQVMQDYMDA-FAEIKRELLTERDEIEVRF 171 >gi|261496545|ref|ZP_05992925.1| Rep family ATP-dependent helicase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307748|gb|EEY09071.1| Rep family ATP-dependent helicase [Mannheimia haemolytica serotype A2 str. OVINE] Length = 672 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 71/218 (32%), Gaps = 44/218 (20%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNSQQQQAVEYTKGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL + T Sbjct: 61 REMRERVAHSIGK-------------------------------------ENSKGLTIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S + DE+ L+ K L + ++ + LK I Sbjct: 84 FHTLGFEILKREYKLLGFKSGMTLFDEQDQIALL----KHLLPENVTEDKDLLKALIATI 139 Query: 196 LEISND-EDIETLISDIISNRTALKLIFFFFSYLWRRK 232 ND E +++ + R + F+ Y + K Sbjct: 140 SNWKNDLLSPERVLTRVRDERERV-FSHFYQLYQNQLK 176 >gi|41409398|ref|NP_962234.1| hypothetical protein MAP3300c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398229|gb|AAS05850.1| hypothetical protein MAP_3300c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 1096 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 22/164 (13%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 S +E + + L T+ + + + P V A AG+GKT + RV+ L+ AHP Sbjct: 6 SPRELACALGLFPPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLIANGYAHPGQ 65 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L LT T+ AA ++ RV + + + L A P + + Sbjct: 66 VLGLTFTRKAAGQLLRRVRSRLARLAGVG---LGAASPNHGAVDPEAAPV---------- 112 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 V T HAF ++++ + L + + E + +L Sbjct: 113 --------VSTYHAFAGSLLRDYGLLLPVEPDTRLLSETELWQL 148 >gi|300741871|ref|ZP_07071892.1| UvrD/REP helicase [Rothia dentocariosa M567] gi|300381056|gb|EFJ77618.1| UvrD/REP helicase [Rothia dentocariosa M567] Length = 1444 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 64/170 (37%), Gaps = 23/170 (13%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 S +E + + L T + + P V A AGSGKT +V RV+ L+ Sbjct: 33 SAREIARALGLNPPTDEQVRIIESPLEPRLVIAGAGSGKTATMVDRVVWLVANKIVRADE 92 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L +T T+ AA E+ R+ + + LS E +P Sbjct: 93 VLGVTFTRKAAGELRDRMRTRLNILRERNLIELSEEELLAGSSEP--------------- 137 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 V T H++ +++++ L + + + Q+ +L + + Sbjct: 138 -------TVSTYHSYANNLVKEYGLRLGVEQDAQMLGDAQAWQLAAQIVQ 180 >gi|329297877|ref|ZP_08255213.1| ATP-dependent DNA helicase Rep [Plautia stali symbiont] Length = 673 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 64/186 (34%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T V A AGSGKT ++ ++ L+ + +T T A+ Sbjct: 1 MRFNPGQQRAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKAS 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + +AR GL + T Sbjct: 61 REMKERVAQTLGR--------------------------KEAR-----------GLMIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + S F++ D++ L+++ K L ++ L++ I Sbjct: 84 FHTLGLEIIKREYKALGMKSTFSLFDDQDQLALLKDLTKQWLE----EDKTLLQQLISTI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|323499661|ref|ZP_08104629.1| ATP-dependent DNA helicase Rep [Vibrio sinaloensis DSM 21326] gi|323315262|gb|EGA68305.1| ATP-dependent DNA helicase Rep [Vibrio sinaloensis DSM 21326] Length = 672 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGK-------------------------------------NEAKGLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + S F++ D++ L++E L LD +++L ++ Sbjct: 84 FHTLGLTIIKREYKALGLKSGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRSLLSA 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|15602381|ref|NP_245453.1| hypothetical protein PM0516 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720777|gb|AAK02600.1| RecB [Pasteurella multocida subsp. multocida str. Pm70] Length = 1230 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 16/166 (9%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH--------PSTLLCLTHTKAAAAEMSHRV 82 + + A+AG+GKT+ + LRLLL +L +T T+AA E+ R+ Sbjct: 15 NKVCLIEASAGTGKTYTIGSLYLRLLLQAGENSFSQPLTVEQILVVTFTEAATEELKGRI 74 Query: 83 LEIITAWSHLSDEILSAEITKIQGKK------PNKSDMSKARHLLITILETPGGLKVQTI 136 E I +Q + SD+ A L +T + TI Sbjct: 75 RERIHQAKKALIAYQEQGEQALQDDPFLLACLASISDLDLAIQRLTIAEQTMDLAAIYTI 134 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 H FC ++ Q+ + + HF + + L+E K+ Sbjct: 135 HGFCRRMLMQYAFHSRV--HFNLTLNKDETALLERLFKAFWREHFY 178 >gi|326423891|ref|NP_760677.2| exodeoxyribonuclease V subunit beta [Vibrio vulnificus CMCP6] gi|319999264|gb|AAO10204.2| exodeoxyribonuclease V, beta subunit [Vibrio vulnificus CMCP6] Length = 1221 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 14/145 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA E+ R+ Sbjct: 37 LIEASAGTGKTFTIAGLYLRLLLGHGSEETRHQVPLTVDQILVVTFTEAATGELRDRIRA 96 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I + L+ ++ I+ + D +A +L+ V TIH FC+ ++ Sbjct: 97 RIHD-ARLAFARGESQDPVIEPLLRDFPDHKQAAAILLQAERQMDEAAVFTIHGFCQRML 155 Query: 145 QQFPLEAN--ITSHFAIADEEQSKK 167 Q E+ + F + DE Q K Sbjct: 156 TQNAFESGSRFNNEF-VTDESQLKA 179 >gi|317153478|ref|YP_004121526.1| UvrD/REP helicase [Desulfovibrio aespoeensis Aspo-2] gi|316943729|gb|ADU62780.1| UvrD/REP helicase [Desulfovibrio aespoeensis Aspo-2] Length = 715 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 42/205 (20%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 +++ V A AGSGKT +V R+ L+ P+ +L LT T+ AA EM Sbjct: 8 NNAQREAVLTTEGPVLVIAGAGSGKTRTIVYRLAHLVRQGVDPAQILLLTFTRKAAQEM- 66 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 +++A +L L G T H+F Sbjct: 67 ----------------------------------LARAGAILGHPLTGTSG---GTFHSF 89 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 A +++ + + F + D + + + K++ + + KKA +L++ Sbjct: 90 AYATLRRNTSDIGFGNGFTLMDRADCEAVCRDVKETL--KLGKGDRSYPKKA--TLLDMI 145 Query: 200 NDEDIETLISDIISNRTALKLIFFF 224 + L + R A L + Sbjct: 146 TKSRNKELTIATVMEREAYHLSPYL 170 >gi|56461631|ref|YP_156912.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Idiomarina loihiensis L2TR] gi|56180641|gb|AAV83363.1| ATP-dependent exoDNAse (exonuclease V) beta subunit [Idiomarina loihiensis L2TR] Length = 1241 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 72/183 (39%), Gaps = 21/183 (11%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH--------------PSTLLCLTHTKAAAA 76 S + A+AG+GKT+ + +RL++ + P +L +T TKAA Sbjct: 26 NSSRLIEASAGTGKTYTIAALYVRLVIGHGSHNGAEETAFDRELVPKNILVMTFTKAATE 85 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNK-----SDMSKARHLLITILETPGGL 131 E+S R+ + + + + E ++ LL ++ Sbjct: 86 ELSDRIRARLAEAAAYFRDPEAVEGDPFLASLREDCAAQGQNLMHLARLLDLASQSMDEA 145 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 V+TIH +C++++++ + S F+ E +++L +A + + EL Sbjct: 146 AVKTIHGWCQSMLKEHAFASG--SLFSQDVETDNEELRLQAAGDYFRRFIYPADAELSAR 203 Query: 192 FYE 194 E Sbjct: 204 LLE 206 >gi|320155533|ref|YP_004187912.1| exodeoxyribonuclease V subunit beta RecB [Vibrio vulnificus MO6-24/O] gi|319930845|gb|ADV85709.1| exodeoxyribonuclease V beta chain RecB [Vibrio vulnificus MO6-24/O] Length = 1206 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 14/145 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA E+ R+ Sbjct: 22 LIEASAGTGKTFTIAGLYLRLLLGHGSEETRHQVPLTVDQILVVTFTEAATGELRDRIRA 81 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I + L+ ++ I+ + D +A +L+ V TIH FC+ ++ Sbjct: 82 RIHD-ARLAFARGESQDPVIEPLLRDFPDHKQAAAILLQAERQMDEAAVFTIHGFCQRML 140 Query: 145 QQFPLEAN--ITSHFAIADEEQSKK 167 Q E+ + F + DE Q K Sbjct: 141 TQNAFESGSRFNNEF-VTDESQLKA 164 >gi|121730735|ref|ZP_01682841.1| acriflavin resistance plasma membrane protein [Vibrio cholerae V52] gi|121627693|gb|EAX60345.1| acriflavin resistance plasma membrane protein [Vibrio cholerae V52] Length = 356 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVAQTLGKGESR-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E L LD +++L + Sbjct: 84 FHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRLLLST 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|320531921|ref|ZP_08032829.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337] gi|320135863|gb|EFW27903.1| UvrD/REP helicase [Actinomyces sp. oral taxon 171 str. F0337] Length = 886 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 67/169 (39%), Gaps = 15/169 (8%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q + + + + T+ + + + V A AGSGKT + QRV+ L+ P +L Sbjct: 12 QALAAALGIHTPTQEQARVIAHRLSPLLVVAGAGSGKTATMAQRVVHLVATGQVRPDQIL 71 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 LT T+ A AE+ RV + S +A + + +D+ Sbjct: 72 GLTFTRKATAELDQRVASRLADLSAAGLLPATASDDDGGVRAADATDV------------ 119 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 G + T ++F +++ L + + + +S +++ ++ Sbjct: 120 --GEPMIATYNSFAGTLVRDHGLRIGVDPDSTLITQARSWQIVSSLLEA 166 >gi|297620279|ref|YP_003708416.1| exodeoxyribonuclease V beta chain [Waddlia chondrophila WSU 86-1044] gi|297375580|gb|ADI37410.1| exodeoxyribonuclease V beta chain [Waddlia chondrophila WSU 86-1044] Length = 1120 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 77/192 (40%), Gaps = 12/192 (6%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHP---STLLCLTHTKAAAAEMSHRVLEIIT 87 + A+AG+GKT + V+RLLL HP +L +T TK A +++ RV + I Sbjct: 35 DSHIILEASAGTGKTFSIENLVVRLLLEGEHPLRIDEILIVTFTKMATSDLRVRVRDTIE 94 Query: 88 AWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 + ++ + ++ ++ A LL L ++ TIH FC ++ + Sbjct: 95 NVVNALEKGVLGRFDYLEPIDRDERKKRPAIRLLERALIGFDEAQIFTIHGFCYRMLAEH 154 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK-----KAFYEILEISNDE 202 ++ + + K + E+ K + + + + F + + E Sbjct: 155 GMDGCVHPDPK----NEGKGIREDTYKKCVMDYFRTGLSDERIGLQHRNFALSSQRGSVE 210 Query: 203 DIETLISDIISN 214 +E + +I+ Sbjct: 211 RLEKTLGKLIAE 222 >gi|254994829|ref|ZP_05277019.1| DNA helicase II (uvrD) [Anaplasma marginale str. Mississippi] Length = 660 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 41/168 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + E L+S + ++ + A AG+GKT + R+ ++ A PS +L + Sbjct: 18 NPEESFLLSLNEEQKEAVFCVDGPVLILAGAGTGKTRTITSRMGYIIKRGLAFPSQILAV 77 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV EI+ Sbjct: 78 TFTNKAAREMLVRVSEIVDTT--------------------------------------- 98 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G+ + T HA I++ + F + + +LI+ T Sbjct: 99 -GIWLGTFHAIAARILRSNAERVGLRRDFTVIGPDDQLQLIKAIVNDT 145 >gi|241767147|ref|ZP_04764910.1| UvrD/REP helicase [Acidovorax delafieldii 2AN] gi|241362257|gb|EER58285.1| UvrD/REP helicase [Acidovorax delafieldii 2AN] Length = 778 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 39/159 (24%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 + + QL A + V A AGSGKT ++ ++ ++ P + +T T A Sbjct: 88 MSAGLNLAQLQAVHYTQGACLVLAGAGSGKTRVITHKIAHMIEQGLEPRRIAAITFTNKA 147 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM R +I +A+ +L V Sbjct: 148 AAEMRERAKGLIG---------------------------RRAKDVL-----------VC 169 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T HA ++++ + F+I D + ++++A Sbjct: 170 TFHALGVRMVREDGAVLGLKPQFSIMDADDVAGILKDAA 208 >gi|284033229|ref|YP_003383160.1| UvrD/REP helicase [Kribbella flavida DSM 17836] gi|283812522|gb|ADB34361.1| UvrD/REP helicase [Kribbella flavida DSM 17836] Length = 1079 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 93/264 (35%), Gaps = 47/264 (17%) Query: 7 FQEHSETIDLIS--QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63 + ++ +DL+ + + + P + A AGSGKT + RV+ L+ P Sbjct: 5 LESTADLVDLLGIPFSDQQLEAITAPLAPGVIVAGAGSGKTTAMAARVVWLICTGQVKPE 64 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L LT TK AA E+ R+ E +T L + P A HL Sbjct: 65 EVLGLTFTKKAANELDVRIREDLTKAGVLGSTL------------PPDQHPILAAHLRKN 112 Query: 124 I----LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS---- 175 + E PG V T HAF ++ + L + + + +L + Sbjct: 113 VPNWEPEEPGEPVVSTYHAFAGTLIAEHGLRLGLEPDVRVLADATRYQLAGRVVRRSAGP 172 Query: 176 ---------TLASIMLDNNEELKKAFYEILEISN-DEDIET--------------LISDI 211 TL + +L + EL EI + DE + L Sbjct: 173 IRYASHHVPTLVNSLLSLDGELADHLLRADEIRDHDEAVRQEVAAAPKQTVEVKKLAETA 232 Query: 212 ISNRTALKLIFFFFSYLWRRKIIE 235 + L+L+ + +Y R +++ Sbjct: 233 LKRGEILQLVEEYQAYKAERGVVD 256 >gi|89073889|ref|ZP_01160396.1| putative ATP-dependent DNA helicase Rep [Photobacterium sp. SKA34] gi|89050424|gb|EAR55925.1| putative ATP-dependent DNA helicase Rep [Photobacterium sp. SKA34] Length = 671 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 61/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + + LT T AA Sbjct: 1 MKLNPRQTEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCDYKARNIAALTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGRQESK-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + S F++ D++ L++E + L + + LK+ I Sbjct: 84 FHTLGLNIIRREYKHLGLKSSFSLFDDQDQMALLKELTEDELE----GDKDLLKQLMSSI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|90415087|ref|ZP_01223044.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum 3TCK] gi|90323791|gb|EAS40406.1| putative ATP-dependent DNA helicase Rep [Photobacterium profundum 3TCK] Length = 673 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 75/226 (33%), Gaps = 44/226 (19%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + V A AGSGKT ++ ++ L+ + + LT T AA Sbjct: 1 MKLNSRQTEAVKYIAGPCLVLAGAGSGKTRVITNKIAYLVQHCDYKARNIAALTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGKTLGKKEAK-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + ++F++ D++ L++E + L D +++L K Sbjct: 84 FHTLGLNIIRREYKALGLKANFSLFDDQDQMALLKELTEDEL-----DGDKDLLKLLQSA 138 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 + +E + + + +L + L++R++ + Sbjct: 139 ISNWKNEMLSAAEAQAYAQSERDQLFAHCYE-LYQRQMKAYNALDF 183 >gi|157377279|ref|YP_001475879.1| ATP-dependent DNA helicase Rep [Shewanella sediminis HAW-EB3] gi|157319653|gb|ABV38751.1| ATP-dependent DNA helicase Rep [Shewanella sediminis HAW-EB3] Length = 670 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 43/168 (25%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 T V A AGSGKT +++ ++ L+ T+ +T T AA EM RV + + Sbjct: 15 TGPCLVLAGAGSGKTRVIINKIAYLVQKCGYQARTIAAVTFTNKAAREMKERVAQSMGR- 73 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 +AR GL + T H I+++ Sbjct: 74 -------------------------KEAR-----------GLWISTFHTLGLEIIKREHK 97 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 + F++ D++ S L++E L D +++L K + Sbjct: 98 VVGLKPGFSLFDDQDSLALLKE-----LTEDEFDGDKDLLKMLMTAIS 140 >gi|312142659|ref|YP_003994105.1| UvrD/REP helicase [Halanaerobium sp. 'sapolanicus'] gi|311903310|gb|ADQ13751.1| UvrD/REP helicase [Halanaerobium sp. 'sapolanicus'] Length = 1039 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 76/193 (39%), Gaps = 9/193 (4%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 + + A+AG+GKT+ L L + ++ +T T+ A AE+ R++E + Sbjct: 2 NKILKASAGTGKTYRLSLEYLNAVFEGTDFRNIVVMTFTRKATAEIRERIIEHLKNLKEN 61 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM-QQFPLEA 151 + E K + + + + IL + + V TI +F I + Sbjct: 62 GIDSDVYEELKKISSLTGEKILLQVDSVFEEILSSKEKINVYTIDSFVNKIFKRSIAPYL 121 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE-ELKKAFYEILEISNDEDIETLISD 210 I + + D+++ E+ + I+ D + F +D +I+D Sbjct: 122 GIK-TYEVTDKDE------ESAEKVFKKILEDEQVFAQMEGFLTENRSRRIKDYTDIIAD 174 Query: 211 IISNRTALKLIFF 223 II+ R +LI + Sbjct: 175 IINQRWKFELIDY 187 >gi|260776643|ref|ZP_05885538.1| exodeoxyribonuclease V beta chain [Vibrio coralliilyticus ATCC BAA-450] gi|260607866|gb|EEX34131.1| exodeoxyribonuclease V beta chain [Vibrio coralliilyticus ATCC BAA-450] Length = 1206 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 11/128 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA----------HPSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA AE+ R+ Sbjct: 22 LIEASAGTGKTFTIAGLYLRLLLGHGCAESKHQQPLTVDQILVVTFTEAATAELRDRIRA 81 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I S + IQ D S+A +L+ V TIH FC+ ++ Sbjct: 82 RIHDARLAFSRGQSGDPV-IQPLLEAIDDHSQAAEILLQAERQMDEAAVYTIHGFCQRML 140 Query: 145 QQFPLEAN 152 Q E+ Sbjct: 141 TQNAFESG 148 >gi|170724835|ref|YP_001758861.1| ATP-dependent DNA helicase Rep [Shewanella woodyi ATCC 51908] gi|169810182|gb|ACA84766.1| ATP-dependent DNA helicase Rep [Shewanella woodyi ATCC 51908] Length = 670 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 61/168 (36%), Gaps = 43/168 (25%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 + V A AGSGKT +++ ++ L+ T+ +T T AA EM RV + + Sbjct: 15 SGPCLVLAGAGSGKTRVIINKIAYLVEKCGYKARTIAAVTFTNKAAREMKERVAQSMGR- 73 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 +AR GL + T H ++++ Sbjct: 74 -------------------------KQAR-----------GLWISTFHTLGLEVIKREHK 97 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 + F++ D++ S L++E L D +++L K + Sbjct: 98 VIGLKPGFSLFDDQDSLALLKE-----LTEDEFDGDKDLLKNLMTAIS 140 >gi|326771896|ref|ZP_08231181.1| UvrD/REP helicase [Actinomyces viscosus C505] gi|326638029|gb|EGE38930.1| UvrD/REP helicase [Actinomyces viscosus C505] Length = 1142 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 14/159 (8%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q +E + + + T+ + + + V A AGSGKT + QRV+ L+ P +L Sbjct: 12 QALAEALGIHTPTQEQARVIAHRLSPLLVVAGAGSGKTATMAQRVVYLVATGQVRPDQIL 71 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 LT T+ A AE+ RV + S G P + + Sbjct: 72 GLTFTRKATAELDQRVASRLAGLSAA-------------GLLPATAPEHDSGAEGTADAT 118 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G + T ++F +++ L + + + +S Sbjct: 119 DVGEPMIATYNSFAGTLVRDHGLRIGVDPDSTLITQARS 157 >gi|206602356|gb|EDZ38837.1| Putative UvrD/REP helicase [Leptospirillum sp. Group II '5-way CG'] Length = 649 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 71/204 (34%), Gaps = 40/204 (19%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 S ++++++ + E + A P A V A AGSGKT +L RV LL +L LT Sbjct: 2 DSRILNVLNEEQREAVTA--PDGPALVLAGAGSGKTRVLTHRVAWLLEKGVPAHRMLVLT 59 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 TK AA + HR+ +++T L Sbjct: 60 FTKKAARVLQHRLADLLTGPQVL------------------------------------- 82 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 L T H ++++F T + D E L++ + + + Sbjct: 83 -LWAGTFHHVGYRLLREFGSRIGYTGSPVVIDREDQVDLLKSILSAFPEGLRKELPPAGL 141 Query: 190 KAFYEILEISNDEDIETLISDIIS 213 L ++ +E +I D S Sbjct: 142 ILNAISLSRNSMLSLEDVIYDRFS 165 >gi|113461072|ref|YP_719140.1| DNA helicase/exodeoxyribonuclease V subunit beta [Haemophilus somnus 129PT] gi|112823115|gb|ABI25204.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Haemophilus somnus 129PT] Length = 1216 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 16/159 (10%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH--------PSTLLCLTHTKAAAAEMSHRVLEII 86 + A+AG+GKTH +V +RLLL +L +T+T+ A E+ R+ E I Sbjct: 35 LIEASAGTGKTHSIVSLYIRLLLQAGENNFSQALEVDQILVVTYTEMATQELKQRIRERI 94 Query: 87 TAWSHLSDEILSA------EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 + E +Q P D+ A + L V TIH+FC Sbjct: 95 YQTKQALIQYQQHQNKTLLEDQFLQELLPYIKDIDLAVYRLTLAERNLDISAVSTIHSFC 154 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 ++ Q+ + + + + +E +LI+ Sbjct: 155 RRVLMQYAFNSGVHFNMELVSDE--SELIQRLANELWRE 191 >gi|330827920|ref|YP_004390872.1| exodeoxyribonuclease V subunit beta [Aeromonas veronii B565] gi|328803056|gb|AEB48255.1| Exodeoxyribonuclease V, beta subunit [Aeromonas veronii B565] Length = 1199 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 22/180 (12%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA-------------------HPSTLLCLTHTKAAA 75 + A+AG+GKT+ + LRLLL + + +L +T T+AA Sbjct: 17 LIEASAGTGKTYTIAGLYLRLLLGHGPLIEEGADAGQPSAHERPLSVTEILVVTFTEAAT 76 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AE+ R+ I S++ Q + AR LL V T Sbjct: 77 AELRGRIRGRIHEARLAFMRGHSSDTLLAQLLAEVEDHELAARRLLA-AERQMDEAAVFT 135 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH FC+ +++Q E+ + F +L +A + ++ L + + Sbjct: 136 IHGFCQRMLKQNAFESG--ALFETEFLTDDSQLRLQAVSDYWRAEFYPVDKTLASSVRAL 193 >gi|212633276|ref|YP_002309801.1| ATP-dependent DNA helicase RepA [Shewanella piezotolerans WP3] gi|212554760|gb|ACJ27214.1| ATP-dependent DNA helicase RepA [Shewanella piezotolerans WP3] Length = 670 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 43/168 (25%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 + V A AGSGKT +++ ++ L+ + +T T AA EM RV + + Sbjct: 15 SGPCLVLAGAGSGKTRVIINKIAYLVEKCGYKARNIAAVTFTNKAAREMKERVSQSMGR- 73 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 +AR GL + T H I+++ Sbjct: 74 -------------------------KEAR-----------GLWISTFHTLGLEIIKREHK 97 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 + F++ D++ + L++E L D +++L + + Sbjct: 98 VVGLKPGFSLFDDQDTLALLKELTLDEL-----DEDKDLLRLLATTIS 140 >gi|254362674|ref|ZP_04978761.1| Rep family ATP-dependent helicase [Mannheimia haemolytica PHL213] gi|153094293|gb|EDN75157.1| Rep family ATP-dependent helicase [Mannheimia haemolytica PHL213] Length = 672 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 71/218 (32%), Gaps = 44/218 (20%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNSQQQQAVEYTKGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL + T Sbjct: 61 REMRERVDHSIGK-------------------------------------ENSKGLTIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S + DE+ L+ K L + ++ + LK I Sbjct: 84 FHTLGFEILKREYKLLGFKSGMTLFDEQDQIALL----KHLLPENVTEDKDLLKALIATI 139 Query: 196 LEISND-EDIETLISDIISNRTALKLIFFFFSYLWRRK 232 ND E +++ + R + F+ Y + K Sbjct: 140 SNWKNDLLSPERVLTRVRDERERV-FSHFYQLYQNQLK 176 >gi|323144233|ref|ZP_08078864.1| putative exodeoxyribonuclease V, beta subunit [Succinatimonas hippei YIT 12066] gi|322415985|gb|EFY06688.1| putative exodeoxyribonuclease V, beta subunit [Succinatimonas hippei YIT 12066] Length = 1304 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 29/180 (16%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----------STLLCLTHTKAAAAEMS 79 S+ + A+AG+GKT + VLRLLL + + +L +T T+AAA+++ Sbjct: 16 NNSSLIEASAGTGKTFTITYLVLRLLLGSGNAKTRLKQGPLDLDQILIVTFTRAAASDLR 75 Query: 80 HRVLEIITAWS------------HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 R+ E I DE L+ + ++QGK + D S +L Sbjct: 76 KRIRENIRQAKEAFDEFAKDPEYRAKDEPLNDLLVEMQGKGISPKDCS---QILNKAERG 132 Query: 128 PGGLKVQTIHAFCEAIMQQ-FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + TIH+FC + Q + EA F A + + EA S + + Sbjct: 133 IDTAAICTIHSFCNRALNQIYAFEAG--EAFETALTDDVSGQMNEALISLWRELFYTKED 190 >gi|229512505|ref|ZP_04401977.1| ATP-dependent DNA helicase Rep [Vibrio cholerae TMA 21] gi|229350504|gb|EEO15452.1| ATP-dependent DNA helicase Rep [Vibrio cholerae TMA 21] Length = 671 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVAQTLGKGESR-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E L LD +++L + Sbjct: 84 FHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRLLLST 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|315604922|ref|ZP_07879980.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313461|gb|EFU61520.1| exopolyphosphatase [Actinomyces sp. oral taxon 180 str. F0310] Length = 1138 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 31/186 (16%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH--PSTLLCLTHTKAAA 75 + T + + P R V A AGSGKT + RVL LL + P+++L LT T+ AA Sbjct: 17 TPTPEQVRVVESPRRPLLVVAGAGSGKTETMSMRVLWLLANHPDLTPASILGLTFTRKAA 76 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ R+ I + HL + P L T Sbjct: 77 GELGDRLRARIRLLAEAMP------------------------HLRERLDADPVSL---T 109 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 ++F E I+ + + I F++ E + ++ + ++ + D A ++ Sbjct: 110 YNSFAERIVSEHGMRIGIDPDFSMLSEAGALDMMLQIVEAWPNDL--DEELTPLGAVSQV 167 Query: 196 LEISND 201 L ++ + Sbjct: 168 LHLAGE 173 >gi|103485553|ref|YP_615114.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256] gi|98975630|gb|ABF51781.1| UvrD/REP helicase [Sphingopyxis alaskensis RB2256] Length = 1112 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 43/182 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEM 78 S++ A + + A GSGKT LV+R+ LL A P+ +L LT + AA E+ Sbjct: 191 DDSQEAAAGFADPALLLEAGPGSGKTRTLVKRIEHLLDFDEAVPNEILALTFSNKAAGEL 250 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 + R+ + + + T HA Sbjct: 251 ADRIATARP--------------------------------------DAAADMWIGTFHA 272 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 F +++++ ++ S+ + D+ Q+ +L+E L + L++ +L+ +++I Sbjct: 273 FGLDLIRRYYELLDLPSNVQLIDKAQAIELLE----DQLPLMGLNHYHDLRNPDQGLVKI 328 Query: 199 SN 200 + Sbjct: 329 LS 330 >gi|325675756|ref|ZP_08155440.1| UvrD/Rep family helicase [Rhodococcus equi ATCC 33707] gi|325553727|gb|EGD23405.1| UvrD/Rep family helicase [Rhodococcus equi ATCC 33707] Length = 1125 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 87/237 (36%), Gaps = 25/237 (10%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E +E + T + + P V A AG+GKT + RV+ L+ P +L Sbjct: 14 ELAEALGQFPPTPEQAAVIEAPLGPTLVVAGAGAGKTETMAARVVWLVANGLVDPEQVLG 73 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T+ AA +++ R+ + + + D+ + L IL + Sbjct: 74 LTFTRKAAQQLTARIRKRLAKLAG----------------SALVRDLDPSGSLRSRILAS 117 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 V T HA+ ++ + L I + E + +L + + D N Sbjct: 118 EPE--VSTYHAYAGRLLSEHGLLLPIEPSATLLSETELWQLAYRVVSAWDDDLDTDRNPA 175 Query: 188 LKKAFYEILEISNDEDIETLIS--DIISNRTAL-KLIFFFFSYLWRRKIIEKSLWSI 241 + E + + + E L+ D+ T L KLI + +R K+L + Sbjct: 176 ---SITESVLALSGQLAEHLVEPADLREAHTELDKLIHTLPAGPKQRGGPSKTLLDL 229 >gi|50311391|ref|XP_455720.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49644856|emb|CAG98428.1| KLLA0F14256p [Kluyveromyces lactis] Length = 966 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 39/167 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 E + +++ ++ + V A G+GKT +L R L++ N HP ++ T Sbjct: 3 ELTNGLNE--RQRQAVTHREDDVLQVLAGPGTGKTKVLTARFAYLVIEKNIHPLRIIMTT 60 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T+ AA E+ R+ I++ + Sbjct: 61 FTRKAANEIKERLQPILSQAGI-----------------------------------SSN 85 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 GL + T H+ C +++Q I +++IA E +++ + T Sbjct: 86 GLLIGTFHSICARLLRQAGHLIGIPKNWSIAKTEDINTILKTLLEDT 132 >gi|156972811|ref|YP_001443718.1| ATP-dependent DNA helicase [Vibrio harveyi ATCC BAA-1116] gi|156524405|gb|ABU69491.1| hypothetical protein VIBHAR_00483 [Vibrio harveyi ATCC BAA-1116] Length = 671 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGKAESK-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E + L + + L++ I Sbjct: 84 FHTLGLNIIKREYKHLGLKAGFSLFDDQDQLALLKELTEKQLD----GDKDLLRQLLSCI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|156744107|ref|YP_001434236.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941] gi|156235435|gb|ABU60218.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941] Length = 1180 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 61/184 (33%), Gaps = 34/184 (18%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 EQ A D ++A G+GKT +V + + L+ P+++L LT + AA EM Sbjct: 200 LDQEQQAAVDAPLPLLLAAGPGTGKTRSIVAKYVSLVRQGVDPASILALTFSNRAAEEMR 259 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R++ + G +++ T H++ Sbjct: 260 ERIVAALR----------------------------------HEAPRLVGRIEISTFHSW 285 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 +++ + + + D L+ + + D E + I IS Sbjct: 286 GLNVLRIYGARLGLPVDARLLDTADLFILLSKRLNDLRLAYFKDVREPTRHLLTIIQAIS 345 Query: 200 NDED 203 +D Sbjct: 346 RIKD 349 >gi|229527316|ref|ZP_04416709.1| ATP-dependent DNA helicase Rep [Vibrio cholerae 12129(1)] gi|229335324|gb|EEO00808.1| ATP-dependent DNA helicase Rep [Vibrio cholerae 12129(1)] Length = 671 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVAQTLGKGESR-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E L LD +++L + Sbjct: 84 FHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRLLLST 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|239993134|ref|ZP_04713658.1| UvrD/REP helicase [Alteromonas macleodii ATCC 27126] Length = 701 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 56/154 (36%), Gaps = 28/154 (18%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82 E L+ + + A AG+GKT+ L + +L+L P +L +T + A++E+S R Sbjct: 26 ETELSDETHHPLLIIAGAGTGKTNTLAHKTAQLILHGVAPERILLMTFARRASSELSSRA 85 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 II ++ K + L + T H+ Sbjct: 86 NRII-----------------------ERTLREKQKAYHPVTLP-----WMGTFHSIASR 117 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 ++++ + F + D S +++ + Sbjct: 118 LLREHASLIGLDPDFTVMDRNDSADMLDLLRHEL 151 >gi|261493211|ref|ZP_05989738.1| Rep family ATP-dependent helicase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311061|gb|EEY12237.1| Rep family ATP-dependent helicase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 672 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 71/218 (32%), Gaps = 44/218 (20%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNSQQQQAVEYTKGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL + T Sbjct: 61 REMRERVDHSIGK-------------------------------------ENSKGLTIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S + DE+ L+ K L + ++ + LK I Sbjct: 84 FHTLGFEILKREYKLLGFKSGMTLFDEQDQIALL----KHLLPENVTEDKDLLKALIATI 139 Query: 196 LEISND-EDIETLISDIISNRTALKLIFFFFSYLWRRK 232 ND E +++ + R + F+ Y + K Sbjct: 140 SNWKNDLLSPERVLTRVRDERERV-FSHFYQLYQNQLK 176 >gi|254491825|ref|ZP_05105004.1| exodeoxyribonuclease V, beta subunit [Methylophaga thiooxidans DMS010] gi|224463303|gb|EEF79573.1| exodeoxyribonuclease V, beta subunit [Methylophaga thiooxydans DMS010] Length = 1164 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 59/159 (37%), Gaps = 17/159 (10%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT L + RL+ +L +T+T+AA E+ R+ + + Sbjct: 16 LIEASAGTGKTFTLAELYCRLITEQQLEVKNILVVTYTRAATEELRGRLRKRL------- 68 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 + + Q + K L +++ + TIH FC+ +Q F E+ Sbjct: 69 -------VEERQKLSQLDAVDDKVIKRLKLAIQSFDEAAIFTIHGFCQRALQDFAFESGH 121 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 F + +++ + + + + Sbjct: 122 A--FDVEMVTDEEEIKQAVVDDFWRRHVSAADANFARFL 158 >gi|219848623|ref|YP_002463056.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485] gi|219542882|gb|ACL24620.1| UvrD/REP helicase [Chloroflexus aggregans DSM 9485] Length = 646 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 36/164 (21%), Positives = 57/164 (34%), Gaps = 41/164 (25%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L +++ + P V A AGSGKT +L R+ L+ PS +L +T T A Sbjct: 4 LNHLNPAQRAAVTAPIGPVLVKAGAGSGKTRVLTLRIAYLITHYGVSPSQILAVTFTNKA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ + GL Sbjct: 64 AREMRERLRGLLGSRIR--------------------------------------GLTSG 85 Query: 135 TIHAFCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA C I+++ T+ F+I ++ +L EA Sbjct: 86 TFHAICTRILRESIEGRLKGYTASFSIYAGDEQLQLAAEALAGV 129 >gi|312140617|ref|YP_004007953.1| uvrd/rep family ATP-dependent DNA helicase [Rhodococcus equi 103S] gi|311889956|emb|CBH49273.1| putative UvrD/Rep family ATP-dependent DNA helicase [Rhodococcus equi 103S] Length = 1116 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 87/237 (36%), Gaps = 25/237 (10%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E +E + T + + P V A AG+GKT + RV+ L+ P +L Sbjct: 5 ELAEALGQFPPTPEQAAVIEAPLGPTLVVAGAGAGKTETMAARVVWLVANGLVDPEQVLG 64 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T+ AA +++ R+ + + + D+ + L IL + Sbjct: 65 LTFTRKAAQQLTARIRKRLAKLAG----------------SALVRDLDPSGSLRSRILAS 108 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 V T HA+ ++ + L I + E + +L + + D N Sbjct: 109 EPE--VSTYHAYAGRLLSEHGLLLPIEPSATLLSETELWQLAYRVVSAWDDDLDTDRNPA 166 Query: 188 LKKAFYEILEISNDEDIETLIS--DIISNRTAL-KLIFFFFSYLWRRKIIEKSLWSI 241 + E + + + E L+ D+ T L KLI + +R K+L + Sbjct: 167 ---SITESVLALSGQLAEHLVEPADLREAHTELDKLIHTLPAGPKQRGGPSKTLLDL 220 >gi|329943325|ref|ZP_08292099.1| ATP-dependent DNA helicase pcrA [Chlamydophila psittaci Cal10] gi|313848473|emb|CBY17477.1| DNA helicase II, UvrD [Chlamydophila psittaci RD1] gi|325507016|gb|ADZ18654.1| ATP-dependent DNA helicase [Chlamydophila psittaci 6BC] gi|328814872|gb|EGF84862.1| ATP-dependent DNA helicase pcrA [Chlamydophila psittaci Cal10] gi|328915165|gb|AEB55998.1| ATP-dependent helicase PcrA [Chlamydophila psittaci 6BC] Length = 637 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 37/162 (22%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 L S+ Q+ A + P V A AG+GKT ++ R+L L+ P +L +T T A Sbjct: 2 LTSELNEAQVAAVTSPLSPILVLAGAGAGKTRVVTCRILHLINEGIAPKEILAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E+ R+L + + V Sbjct: 62 AKELKERILHLCPQAHGSDIPM------------------------------------VC 85 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I+++ N ++F I D+ + KL+++ + Sbjct: 86 TFHSLGVFILRRSIQALNRENNFIIYDQSDTDKLLKQCLQKF 127 >gi|307719793|ref|YP_003875325.1| DNA helicase [Spirochaeta thermophila DSM 6192] gi|306533518|gb|ADN03052.1| DNA helicase [Spirochaeta thermophila DSM 6192] Length = 683 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 78/222 (35%), Gaps = 52/222 (23%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + + +EQ A + A AGSGKT ++ ++ L+ A ++L +T T Sbjct: 4 LSYLETLNAEQREAVFHSGSPLLILAGAGSGKTRVITTKIAYLVDALGIPARSILAVTFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R L++ G+ Sbjct: 64 NKAAREMYERALQLSPRTE---------------------------------------GV 84 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 ++T H+F +++ + + FAI D+E ++ L L+SI+ + Sbjct: 85 MIKTFHSFGAWLLRLYGERLGLARDFAIYDDEDARAL--------LSSILEGSQRRHLSR 136 Query: 192 FYEILEISNDEDI--ETLISDIISNRTALKLIFFFFSYLWRR 231 + + + D + E +S I+ + ++ + R Sbjct: 137 YAWAISRAKDYALGPEDDLSSILED-DDFPELYARYEDRLRD 177 >gi|163802370|ref|ZP_02196264.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio sp. AND4] gi|159173899|gb|EDP58713.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio sp. AND4] Length = 1212 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 14/145 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA AE+ R+ Sbjct: 22 LIEASAGTGKTFTIAGLYLRLLLGHGTTDTKHRVPLTVDQILVVTFTEAATAELRDRIRA 81 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I S + IQ D +A +L+ V TIH FC+ ++ Sbjct: 82 RIHDARIAFSRGQSLDPV-IQPLLVEIDDHKQATEILLQAERQMDEAAVYTIHGFCQRML 140 Query: 145 QQFPLEAN--ITSHFAIADEEQSKK 167 Q E+ + F + DE K Sbjct: 141 TQNAFESGSRFDNEF-VTDESHLKA 164 >gi|167034115|ref|YP_001669346.1| UvrD/REP helicase [Pseudomonas putida GB-1] gi|166860603|gb|ABY99010.1| UvrD/REP helicase [Pseudomonas putida GB-1] Length = 1061 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 77/201 (38%), Gaps = 39/201 (19%) Query: 28 SDPTRSAWVSANAGSGKTHILVQR-VLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 SD R ++SA AGSGKT+ L + L P ++ T T+ AAAE+ RV + Sbjct: 2 SDNPRITFISAGAGSGKTYRLTELLYQELTSQQVQPEGIIATTFTRKAAAELRERVRSHL 61 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 + + G ++ T+++ C +++ Sbjct: 62 LDKGQVG------------------------------LASAMGQARIGTVNSLCGQLLEH 91 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF--------YEILEI 198 F EA + + +EEQ+K L+ +A S L ++ + + ++ Sbjct: 92 FAFEAGMPPQQRVLEEEQAKVLLNQAVDSVLDGTRMEAFLAISRRLGLEVTLQQSDLPSD 151 Query: 199 SNDEDIETLISDIISNRTALK 219 S + + L+ + SN L+ Sbjct: 152 SWQDALRRLLDQLRSNDIDLE 172 >gi|254230496|ref|ZP_04923870.1| ATP-dependent DNA helicase Rep [Vibrio sp. Ex25] gi|262392752|ref|YP_003284606.1| ATP-dependent DNA helicase Rep [Vibrio sp. Ex25] gi|151936985|gb|EDN55869.1| ATP-dependent DNA helicase Rep [Vibrio sp. Ex25] gi|262336346|gb|ACY50141.1| ATP-dependent DNA helicase Rep [Vibrio sp. Ex25] Length = 671 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 79/228 (34%), Gaps = 48/228 (21%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + S+ + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPSQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGKAESK-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E L LD +++L + ++ Sbjct: 84 FHTLGLNIIKREYKHLGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLR---QL 135 Query: 196 LEISNDEDIETLISDIISNRTA--LKLIFFFFSYLWRRKIIEKSLWSI 241 L ++ + L + R + +F F ++++++ + Sbjct: 136 LSCISNWKNDMLTPEQAKARAQGEQQQLFAFCFDMYQKQMKAYNALDF 183 >gi|229524876|ref|ZP_04414281.1| ATP-dependent DNA helicase Rep [Vibrio cholerae bv. albensis VL426] gi|229338457|gb|EEO03474.1| ATP-dependent DNA helicase Rep [Vibrio cholerae bv. albensis VL426] Length = 671 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVAQTLGKGESR-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E L LD +++L + Sbjct: 84 FHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRLLLST 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|229149252|ref|ZP_04277491.1| UvrD/REP helicase [Bacillus cereus m1550] gi|228634224|gb|EEK90814.1| UvrD/REP helicase [Bacillus cereus m1550] Length = 957 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 34/158 (21%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSH 80 ++ + A GSGKT+ LV+R+L L+ P +L T T+ AA E+ Sbjct: 10 QQKKAVETTEGPLLIIAGPGSGKTYTLVERILYLIEHKQVEPENILVATFTEKAANELVT 69 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ + I + V TIH+ C Sbjct: 70 RISNKLHE---------------------------------ANIKFNLNEMYVGTIHSLC 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 I+++ + ++ + D+ + ++ + L Sbjct: 97 LRILEENREYTRLKKNYILMDQFDQQYMLYQKLSRFLE 134 >gi|315445540|ref|YP_004078419.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1] gi|315263843|gb|ADU00585.1| DNA/RNA helicase, superfamily I [Mycobacterium sp. Spyr1] Length = 1091 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 24/161 (14%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E S + L T+ + + + P V A AG+GKT + RV+ L+ A P +L Sbjct: 10 ELSRALGLFEPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYATPGEVLG 69 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T+ AA ++ RV + + I +A Sbjct: 70 LTFTRKAAGQLLRRVRSRLARLAGAGLTIPAAG-----------------------ADLA 106 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 + + T HAF ++++F L + + E + +L Sbjct: 107 DDPVTIGTYHAFAGTLLREFGLMLPVEPDTRLLGETELWQL 147 >gi|255004091|ref|ZP_05278892.1| DNA helicase II (uvrD) [Anaplasma marginale str. Virginia] Length = 661 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 41/168 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + E L+S + ++ + A AG+GKT + R+ ++ A PS +L + Sbjct: 18 NPEESFLLSLNEEQKEAVFCVDGPVLILAGAGTGKTRTITSRMGYIIKRGLAFPSQILAV 77 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV EI+ Sbjct: 78 TFTNKAAREMLVRVSEIVDTT--------------------------------------- 98 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G+ + T HA I++ + F + + +LI+ T Sbjct: 99 -GIWLGTFHAIAARILRSNAERVGLRRDFTVIGPDDQLQLIKAIVNDT 145 >gi|229521119|ref|ZP_04410540.1| ATP-dependent DNA helicase Rep [Vibrio cholerae TM 11079-80] gi|229342004|gb|EEO07005.1| ATP-dependent DNA helicase Rep [Vibrio cholerae TM 11079-80] Length = 671 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVAQTLGKGESR-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E L LD +++L + Sbjct: 84 FHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRLLLST 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|183981382|ref|YP_001849673.1| ATP-dependent DNA helicase [Mycobacterium marinum M] gi|183174708|gb|ACC39818.1| ATP-dependent DNA helicase [Mycobacterium marinum M] Length = 1101 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 62/170 (36%), Gaps = 27/170 (15%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 S E + + + T + + + P V A AG+GKT + RV+ L+ A P Sbjct: 6 SPDEIASALGIFPPTDEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQ 65 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L LT T+ AA ++ RV + + + + + Sbjct: 66 VLGLTFTRKAAGQLLRRVRSRLARLAGT--------------------------TVGVAV 99 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 E G V T HAF ++++ L I + E + +L E Sbjct: 100 GEAAGAPTVSTYHAFAGSLLRDHGLLLPIEPDTRLLSETELWQLAFEVVN 149 >gi|302818017|ref|XP_002990683.1| hypothetical protein SELMODRAFT_429070 [Selaginella moellendorffii] gi|300141605|gb|EFJ08315.1| hypothetical protein SELMODRAFT_429070 [Selaginella moellendorffii] Length = 1291 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 64/174 (36%), Gaps = 38/174 (21%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTL 65 S + + ++ ++ + L S + + A GSGKT +V R+L LL + Sbjct: 242 SAADMPTYLRKLNVSQRDAAL-SSIGKPLLIVAGPGSGKTSTMVARILTLLNEGVDSKNI 300 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T AAA EM RV ++ Sbjct: 301 LGMTFTTAAATEMMDRVAAVVGK------------------------------------- 323 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 E L + T H+FC + + + N TS F + Q +K + EA + L + Sbjct: 324 EASKELMISTFHSFCLQLCRSHAEKLNRTSEFLVYGASQQRKAVIEATRLALEA 377 >gi|170717649|ref|YP_001784727.1| exodeoxyribonuclease V subunit beta [Haemophilus somnus 2336] gi|168825778|gb|ACA31149.1| exodeoxyribonuclease V, beta subunit [Haemophilus somnus 2336] Length = 1216 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 16/159 (10%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH--------PSTLLCLTHTKAAAAEMSHRVLEII 86 + A+AG+GKTH +V +RLLL +L +T+T+ A E+ R+ E I Sbjct: 35 LIEASAGTGKTHSIVSLYIRLLLQAGENNFSQALEVDQILVVTYTEMATQELKQRIRERI 94 Query: 87 TAWSHLSDEILSA------EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 + E +Q P D+ A + L V TIH+FC Sbjct: 95 YQTKQALIQYQQHQNKTLLEDQFLQELLPYIKDIDLAVYRLTLAERNLDISAVSTIHSFC 154 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 ++ Q+ + + + + +E +LI+ Sbjct: 155 RRVLMQYAFNSGVHFNMELVSDE--SELIQRLANELWRE 191 >gi|90581490|ref|ZP_01237284.1| putative ATP-dependent DNA helicase Rep [Vibrio angustum S14] gi|90437351|gb|EAS62548.1| putative ATP-dependent DNA helicase Rep [Vibrio angustum S14] Length = 671 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 61/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + + LT T AA Sbjct: 1 MKLNPRQTEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCDYKARNIAALTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGRQESK-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E + L + + LK+ I Sbjct: 84 FHTLGLNIIRREYKHLGLKASFSLFDDQDQMALLKELTEDELE----GDKDLLKQLMSSI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|294341371|emb|CAZ89788.1| putative exodeoxyribonuclease V, beta subunit recB [Thiomonas sp. 3As] Length = 1202 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 63/164 (38%), Gaps = 17/164 (10%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANA----------HPSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T+AA E++ Sbjct: 16 QGSRLIEASAGTGKTWTIAALYLRLVLGHGTEATAFARPLSPEQILVMTFTRAATRELAE 75 Query: 81 RVLEIITAWSHLSDEILSAE-----ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 R+ + + L+ + + ++ P S A L + V T Sbjct: 76 RIRARLVEAAQCFQGALAPKVDDEFLLRLLDSYPPGSARQTAAWRLAMAAQEMDDAAVFT 135 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 I A+C+ ++++ ++ + + +L +A Sbjct: 136 IDAWCQRMLREHAFDSGHSFDEDLL--ADEGELTTQAVHDFWRQ 177 >gi|297581602|ref|ZP_06943524.1| ATP-dependent DNA helicase Rep [Vibrio cholerae RC385] gi|297534009|gb|EFH72848.1| ATP-dependent DNA helicase Rep [Vibrio cholerae RC385] Length = 671 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVAQTLGKGESR-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E L LD +++L + Sbjct: 84 FHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRLLLST 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|146301512|ref|YP_001196103.1| UvrD/REP helicase [Flavobacterium johnsoniae UW101] gi|146155930|gb|ABQ06784.1| ATP-dependent DNA helicase, Rep family [Flavobacterium johnsoniae UW101] Length = 787 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 53/162 (32%), Gaps = 39/162 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L + S+ V A AGSGKT L R ++ + S +LC+T T A Sbjct: 6 LENLNPSQLQAVKTTEGYVRVIAGAGSGKTKALTSRFAYIVDRLGINSSNILCVTFTNKA 65 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +I +T + Sbjct: 66 AQEMKKRVKALIG--------------------------------------DTYDLAFIT 87 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H FC +++ + + +F I D E K ++ + Sbjct: 88 TYHGFCVRFLREEINKIHFPKNFIILDAEDQKSILRDIFNEL 129 >gi|255002962|ref|ZP_05277926.1| DNA helicase II [Anaplasma marginale str. Puerto Rico] gi|269958969|ref|YP_003328758.1| DNA helicase 2 [Anaplasma centrale str. Israel] gi|269848800|gb|ACZ49444.1| DNA helicase 2 [Anaplasma centrale str. Israel] Length = 661 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 41/168 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + E L+S + ++ + A AG+GKT + R+ ++ A PS +L + Sbjct: 18 NPEESFLLSLNEEQKEAVFCVDGPVLILAGAGTGKTRTITSRMGYIIKRGLAFPSQILAV 77 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV EI+ Sbjct: 78 TFTNKAAREMLVRVSEIVDTT--------------------------------------- 98 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G+ + T HA I++ + F + + +LI+ T Sbjct: 99 -GIWLGTFHAIAARILRSNAERVGLRRDFTVIGPDDQLQLIKAIVNDT 145 >gi|307256307|ref|ZP_07538090.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865133|gb|EFM97033.1| ATP-dependent DNA helicase rep [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 672 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 71/218 (32%), Gaps = 44/218 (20%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNDQQQQAVEYVTGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL + T Sbjct: 61 REMRERVAHSIGK-------------------------------------ENSKGLTIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S + DE L+ K L ++ + LK I Sbjct: 84 FHTLGFEILKREYKLLGFKSGMTLFDEHDQLALL----KHLLPENAAEDKDLLKALISTI 139 Query: 196 LEISND-EDIETLISDIISNRTALKLIFFFFSYLWRRK 232 ND ET+++ + R + F+ Y + K Sbjct: 140 SNWKNDLLSPETVLTRVRDERERV-FSHFYRLYQNQLK 176 >gi|255067137|ref|ZP_05318992.1| ATP-dependent DNA helicase Rep [Neisseria sicca ATCC 29256] gi|255048505|gb|EET43969.1| ATP-dependent DNA helicase Rep [Neisseria sicca ATCC 29256] Length = 666 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 38/174 (21%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q V A AGSGKT ++ Q++ L++ P T+ +T T AA Sbjct: 1 MKLNPQQQAAVKYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV +++ GL + T Sbjct: 61 TEMQERVAKMLPK-------------------------------------SQTRGLTICT 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 H+ I+++ +F+I D S K+I E T + ++ Sbjct: 84 FHSLGMKILREEANHIGYKKNFSILDSTDSAKIIGELLGGTGKEALFKAQHQIS 137 >gi|153824049|ref|ZP_01976716.1| ATP-dependent DNA helicase Rep [Vibrio cholerae B33] gi|126518428|gb|EAZ75651.1| ATP-dependent DNA helicase Rep [Vibrio cholerae B33] Length = 607 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVAQTLGKGESR-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E L LD +++L + Sbjct: 84 FHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRLLLST 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|29840740|ref|NP_829846.1| ATP-dependent helicase PcrA [Chlamydophila caviae GPIC] gi|29835090|gb|AAP05724.1| ATP-dependent helicase PcrA [Chlamydophila caviae GPIC] Length = 637 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 37/162 (22%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 L S+ Q+ A + P V A AG+GKT ++ R+L L+ P +L +T T A Sbjct: 2 LTSELNEAQIAAVTSPLSPTLVLAGAGAGKTRVVTCRILHLINEGIAPKEILAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E+ R+L + V Sbjct: 62 AKELKERILHQCPQAHGSDVPM------------------------------------VC 85 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I+++ N ++F I D+ + KL+++ + Sbjct: 86 TFHSLGVFILRRSIHALNRENNFIIYDQSDTDKLLKQCLQKF 127 >gi|319638182|ref|ZP_07992945.1| ATP-dependent DNA helicase [Neisseria mucosa C102] gi|317400455|gb|EFV81113.1| ATP-dependent DNA helicase [Neisseria mucosa C102] Length = 666 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 54/158 (34%), Gaps = 38/158 (24%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q V A AGSGKT ++ Q++ L++ P T+ +T T AA Sbjct: 1 MKLNPQQQAAVQYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV +++ GL + T Sbjct: 61 TEMQERVAKMLPK-------------------------------------SQMRGLTICT 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 H+ I+++ +F+I D S K+I E Sbjct: 84 FHSLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 121 >gi|262037611|ref|ZP_06011062.1| ATP-dependent nuclease subunit A [Leptotrichia goodfellowii F0264] gi|261748356|gb|EEY35744.1| ATP-dependent nuclease subunit A [Leptotrichia goodfellowii F0264] Length = 1055 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 80/191 (41%), Gaps = 11/191 (5%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIIT--AWSHL 92 + A+AG+GKT+ L + L+ ++ +T TK A AE+ R+ + + A+ Sbjct: 5 ILKASAGTGKTYRLSLEYIANLIKGISYKNIIVMTFTKKATAEIKDRIYDFLYQIAFEKY 64 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ-FPLEA 151 E L + +I G + + D + +++ +++ +++ TI F I + Sbjct: 65 KFEELEKSLKEIYGFQGGEIDKNSLQNIYFEMIKNKDEIRIYTIDGFTNQIFKNTIAPFF 124 Query: 152 NITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN--EELKKAFYEILEISNDEDIETLIS 209 I + DEE + + L I+ +N E+ F E E + + I Sbjct: 125 GI-YGYETLDEED-----DGFYEDILVKILNNNEYFEKFSFVFEEKKERKDIKKYVKFIK 178 Query: 210 DIISNRTALKL 220 +II+ R L Sbjct: 179 NIINIRKDFIL 189 >gi|256396908|ref|YP_003118472.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928] gi|256363134|gb|ACU76631.1| UvrD/REP helicase [Catenulispora acidiphila DSM 44928] Length = 1124 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 67/167 (40%), Gaps = 24/167 (14%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E + + + T+ + + P A + A AGSGKT ++ RV+ L+ P +L Sbjct: 6 EDLKALLGVPYTEEQLEAITAPLEPAVIVAGAGSGKTTVMAARVVWLVGTGQVGPHEVLG 65 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T AAAE++ R+ + + + +++T+ G+ Sbjct: 66 LTFTNKAAAELAERIRKALRKLEDEELDDPDSDLTESVGEP------------------- 106 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 V T HA+ + ++++ L + + + +L A + Sbjct: 107 ----TVSTYHAYADRLIKEHGLRLGLEPSARLLADATRYQLAVTAVR 149 >gi|145225243|ref|YP_001135921.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK] gi|145217729|gb|ABP47133.1| UvrD/REP helicase [Mycobacterium gilvum PYR-GCK] Length = 1091 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 24/161 (14%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E S + L T+ + + + P V A AG+GKT + RV+ L+ A P +L Sbjct: 10 ELSRALGLFEPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYATPGEVLG 69 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T+ AA ++ RV + + I +A Sbjct: 70 LTFTRKAAGQLLRRVRSRLARLAGAGLTIPAAG-----------------------ADLA 106 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 + + T HAF ++++F L + + E + +L Sbjct: 107 DDPVTIGTYHAFAGTLLREFGLMLPVEPDTRLLGETELWQL 147 >gi|15640197|ref|NP_229824.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587549|ref|ZP_01677315.1| ATP-dependent DNA helicase Rep [Vibrio cholerae 2740-80] gi|147674491|ref|YP_001218439.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O395] gi|227080400|ref|YP_002808951.1| ATP-dependent DNA helicase Rep [Vibrio cholerae M66-2] gi|229507018|ref|ZP_04396526.1| ATP-dependent DNA helicase Rep [Vibrio cholerae BX 330286] gi|229509395|ref|ZP_04398878.1| ATP-dependent DNA helicase Rep [Vibrio cholerae B33] gi|229516342|ref|ZP_04405790.1| ATP-dependent DNA helicase Rep [Vibrio cholerae RC9] gi|229606533|ref|YP_002877181.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MJ-1236] gi|254851295|ref|ZP_05240645.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MO10] gi|255743986|ref|ZP_05417940.1| ATP-dependent DNA helicase Rep [Vibrio cholera CIRS 101] gi|298501306|ref|ZP_07011102.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MAK 757] gi|9654570|gb|AAF93343.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548187|gb|EAX58257.1| ATP-dependent DNA helicase Rep [Vibrio cholerae 2740-80] gi|146316374|gb|ABQ20913.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O395] gi|227008288|gb|ACP04500.1| ATP-dependent DNA helicase Rep [Vibrio cholerae M66-2] gi|227012025|gb|ACP08235.1| ATP-dependent DNA helicase Rep [Vibrio cholerae O395] gi|229346768|gb|EEO11738.1| ATP-dependent DNA helicase Rep [Vibrio cholerae RC9] gi|229353710|gb|EEO18647.1| ATP-dependent DNA helicase Rep [Vibrio cholerae B33] gi|229356123|gb|EEO21042.1| ATP-dependent DNA helicase Rep [Vibrio cholerae BX 330286] gi|229369188|gb|ACQ59611.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MJ-1236] gi|254847000|gb|EET25414.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MO10] gi|255738251|gb|EET93642.1| ATP-dependent DNA helicase Rep [Vibrio cholera CIRS 101] gi|297539966|gb|EFH76031.1| ATP-dependent DNA helicase Rep [Vibrio cholerae MAK 757] Length = 671 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVAQTLGKGESR-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E L LD +++L + Sbjct: 84 FHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRLLLST 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|261213209|ref|ZP_05927492.1| ATP-dependent DNA helicase Rep [Vibrio sp. RC341] gi|260837627|gb|EEX64321.1| ATP-dependent DNA helicase Rep [Vibrio sp. RC341] Length = 671 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVAQSLGKAESR-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E L LD +++L + Sbjct: 84 FHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRLLLST 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|222474985|ref|YP_002563400.1| DNA helicase II (uvrD) [Anaplasma marginale str. Florida] gi|222419121|gb|ACM49144.1| DNA helicase II (uvrD) [Anaplasma marginale str. Florida] Length = 671 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 41/168 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + E L+S + ++ + A AG+GKT + R+ ++ A PS +L + Sbjct: 28 NPEESFLLSLNEEQKEAVFCVDGPVLILAGAGTGKTRTITSRMGYIIKRGLAFPSQILAV 87 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV EI+ Sbjct: 88 TFTNKAAREMLVRVSEIVDTT--------------------------------------- 108 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G+ + T HA I++ + F + + +LI+ T Sbjct: 109 -GIWLGTFHAIAARILRSNAERVGLRRDFTVIGPDDQLQLIKAIVNDT 155 >gi|145596260|ref|YP_001160557.1| UvrD/REP helicase [Salinispora tropica CNB-440] gi|145305597|gb|ABP56179.1| UvrD/REP helicase [Salinispora tropica CNB-440] Length = 1144 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 23/167 (13%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E ++ + L + T+ + + + P V A AGSGKT + RV+ L+ + P +L Sbjct: 27 ELAKLLRLPAPTREQAAIIAAPVEPLLVVAGAGSGKTETMAARVVWLVANSYVQPEQVLG 86 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T+ AA E++HRV + + +P Sbjct: 87 LTFTRKAAGELAHRVRTRLGQLVRRLGRNGRHPLDDPLSGEP------------------ 128 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 V T H++ ++ + L A + E +L++ + Sbjct: 129 ----TVATYHSYAGRVVTEHGLRAGYEPATRLLTEASRWQLVDLIVR 171 >gi|291613986|ref|YP_003524143.1| UvrD/REP helicase [Sideroxydans lithotrophicus ES-1] gi|291584098|gb|ADE11756.1| UvrD/REP helicase [Sideroxydans lithotrophicus ES-1] Length = 662 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 53/158 (33%), Gaps = 40/158 (25%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 ++ T+ E + V A AGSGKT ++ ++ L+ P + +T T AA Sbjct: 5 LNPTQREAIKYL--GGPLLVLAGAGSGKTRVITHKLAYLIEECGYSPRNIAAITFTNKAA 62 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV +I+ G+ + T Sbjct: 63 NEMRERVGKIMNG-------------------------------------RDAKGMTIST 85 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 HA I+++ F+I D + K+I E Sbjct: 86 FHALGMQILREDGPLLGYKKQFSIFDSADTGKIISELL 123 >gi|251771257|gb|EES51838.1| UvrD/REP helicase [Leptospirillum ferrodiazotrophum] Length = 647 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 57/176 (32%), Gaps = 42/176 (23%) Query: 17 ISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 +S EQ P A V A AGSGKT +L R LL +L LT TK A+ Sbjct: 6 LSDLNEEQAPAVLAPDGPALVLAGAGSGKTRVLTYRAAHLLSRGVPAPRILLLTFTKKAS 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 M R+ ++ + T Sbjct: 66 RVMQERLTGLMGPTFFIP--------------------------------------WAGT 87 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 H ++++F + + D E + L++E + + + D EEL A Sbjct: 88 FHHVGYRLIREFGHRIGVEGGRTLLDREDQRDLVKEIRDAV---VGEDPGEELPPA 140 >gi|226939251|ref|YP_002794322.1| Rep [Laribacter hongkongensis HLHK9] gi|226714175|gb|ACO73313.1| Rep [Laribacter hongkongensis HLHK9] Length = 674 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 38/164 (23%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTK 72 + L ++ V A AGSGKT ++ Q++ L+ + +T T Sbjct: 1 MSLAQLNPPQRAAIRYLDGPLLVLAGAGSGKTRVITQKIAYLIREGGFSARNIAAITFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV ++++A + GL Sbjct: 61 KAAREMLERVGKLLSA-------------------------------------DELRGLT 83 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 V T H+ +++Q F+I D + K+I + +T Sbjct: 84 VSTFHSLGLMMLRQEAQHVGYKPRFSILDSADATKIIADILHTT 127 >gi|94263170|ref|ZP_01286988.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1] gi|93456541|gb|EAT06655.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1] Length = 1239 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 8/172 (4%) Query: 27 ASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLE 84 A+ P + A+AG+GKT + LR +L P +L L+ T+AA AE+ R+ Sbjct: 9 ATLPAAPVQLIEASAGTGKTWSITALYLRFILERQLPVEKILVLSFTEAATAELHERLRA 68 Query: 85 IITAWSHLSDEILSAEITK----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 + L+ E + + + ++ + LL L + V TIH FC Sbjct: 69 RLQGAVDAYQRFLNGEQPASDPFLAALTSHSRNPAQDQVLLQRALASIDQAAVLTIHGFC 128 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 ++QQ E+ + F + + ++ L ++ ++ L Sbjct: 129 HRMLQQGAFESGMP--FELELLAELDHYFQQLIHDYLNTVFHRDDPRLLSLL 178 >gi|56476966|ref|YP_158555.1| ATP-dependent exoDNAse beta subunit [Aromatoleum aromaticum EbN1] gi|56313009|emb|CAI07654.1| ATP-dependent exoDNAse beta subunit [Aromatoleum aromaticum EbN1] Length = 1229 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 74/187 (39%), Gaps = 11/187 (5%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT + LRLL+ +L +T T+AA AE+ RV E I Sbjct: 26 LIEASAGTGKTWNICGLFLRLLVERELAVDAILVVTFTRAATAELKSRVRERIAGTLAYL 85 Query: 94 DEILSAE----ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 D + + + ++ R L L+T + TIH +C+ + P Sbjct: 86 DGTAADGDPFVAQLVAALESQAIARAQIRERLDLALQTFDEAAIFTIHGYCQRALADTPF 145 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN--NEELKKAFYEILEISNDEDIETL 207 A + FA+ E +L EA + + + EL + I + E TL Sbjct: 146 AAALP--FALELTEDDLELRLEAARDFWRREIASDACAAELGELL--IARGDSPERWATL 201 Query: 208 ISDIISN 214 + ++ Sbjct: 202 LGRYLAR 208 >gi|56416619|ref|YP_153693.1| DNA helicase II [Anaplasma marginale str. St. Maries] gi|56387851|gb|AAV86438.1| DNA helicase II [Anaplasma marginale str. St. Maries] Length = 671 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 56/168 (33%), Gaps = 41/168 (24%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCL 68 + E L+S + ++ + A AG+GKT + R+ ++ A PS +L + Sbjct: 28 NPEESFLLSLNEEQKEAVFCVDGPVLILAGAGTGKTRTITSRMGYIIKRGLAFPSQILAV 87 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM RV EI+ Sbjct: 88 TFTNKAAREMLVRVSEIVDTT--------------------------------------- 108 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 G+ + T HA I++ + F + + +LI+ T Sbjct: 109 -GIWLGTFHAIAARILRSNAERVGLRRDFTVIGPDDQLQLIKAIVNDT 155 >gi|123440560|ref|YP_001004554.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087521|emb|CAL10302.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 674 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 38/161 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ P + +T T AA EM Sbjct: 4 NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR GL + T H Sbjct: 64 KERVAQTLGR--------------------------KEAR-----------GLMIATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 I+++ + S+F++ D + L+++ L Sbjct: 87 LGLEIIKKEYKALGMKSNFSLFDAQDQLGLLKDLTHKWLED 127 >gi|229175134|ref|ZP_04302650.1| UvrD/REP helicase [Bacillus cereus MM3] gi|228608270|gb|EEK65576.1| UvrD/REP helicase [Bacillus cereus MM3] Length = 957 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 80/231 (34%), Gaps = 47/231 (20%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSH 80 ++ + A GSGKT+ LV+R+L L+ P +L T T+ AA E+ Sbjct: 10 QQKKAVETTEGPLLIIAGPGSGKTYTLVERILYLIEHRQVEPENILVATFTEKAANELVT 69 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ + I + V TIH+ C Sbjct: 70 RISNKLHE---------------------------------ANIKFNLNEMYVGTIHSLC 96 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA----SIMLDNNEELKKAFYEIL 196 I+++ + ++ + D+ + ++ + L +L+ N K E+L Sbjct: 97 LRILEENREYTRLKKNYILMDQFDQQYMLYQKLSRFLELDEIESLLNFNTSRWKQSQELL 156 Query: 197 EISNDE-----DIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 + N DI LI + + L + + L +IE++ + Sbjct: 157 KWINKLSEEIVDINKLIESDEARLSVLGKCYKVYEQL----LIEENALDFS 203 >gi|254776585|ref|ZP_05218101.1| hypothetical protein MaviaA2_18221 [Mycobacterium avium subsp. avium ATCC 25291] Length = 1139 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 22/164 (13%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 S +E + + L T+ + + + P V A AG+GKT + RV+ L+ AHP Sbjct: 49 SPRELACALALFPPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLIANGYAHPGQ 108 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L LT T+ AA ++ RV + + + L A P + + Sbjct: 109 VLGLTFTRKAAGQLLRRVRSRLARLAGVG---LGAASPNHGAVDPEAAPV---------- 155 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 V T HAF ++++ + L + + E + +L Sbjct: 156 --------VSTYHAFAGSLLRDYGLLLPVEPDTRLLSETELWQL 191 >gi|289522440|ref|ZP_06439294.1| ATP-dependent helicase PcrA [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504276|gb|EFD25440.1| ATP-dependent helicase PcrA [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 662 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 61/166 (36%), Gaps = 43/166 (25%) Query: 16 LISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L+SQ Q A T+ V A AGSGKT +L + L+ + A P +L +T T Sbjct: 6 LLSQLNPRQREAVLYTKGPLLVLAGAGSGKTRVLTYKFAYLVASGLAQPWQILAVTFTNK 65 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++ + L + Sbjct: 66 AAREMKERVWALLGS--------------------------------------DINNLHI 87 Query: 134 QTIHAFCEAIMQQFPL---EANITSHFAIADEEQSKKLIEEAKKST 176 T H++ + ++ EA I F++ D S+KL+E K Sbjct: 88 STFHSYGVEFLYRYTKEVGEAGIRVPFSVFDRGDSQKLVERLMKDF 133 >gi|310766108|gb|ADP11058.1| ATP-dependent DNA helicase Rep [Erwinia sp. Ejp617] Length = 673 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 70/198 (35%), Gaps = 43/198 (21%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T A+ EM R Sbjct: 7 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAYLIRECGYQARHIAAVTFTNKASREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VAQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 I+++ + S+F++ D++ L+++ + L ++ L++ I ND Sbjct: 90 EIIKREYAALGMKSNFSLFDDQDQLALLKDLTEQWLE----NDKNLLQQLISTISNWKND 145 Query: 202 E-DIETLISDIISNRTAL 218 D + +S R L Sbjct: 146 LMDPPRAAAGALSERDKL 163 >gi|153948778|ref|YP_001399172.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis IP 31758] gi|152960273|gb|ABS47734.1| ATP-dependent DNA helicase Rep [Yersinia pseudotuberculosis IP 31758] Length = 673 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 42/183 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ P + +T T AA EM Sbjct: 4 NPSQQEAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKYIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR GL + T H Sbjct: 64 KERVAQTLGR--------------------------KEAR-----------GLMIATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I+++ + + S+F++ D + L+++ L D+ L++ I Sbjct: 87 LGLEIIKKEYVALGMKSNFSLFDAQDQMGLLKDLTHKWLE----DDKTLLQQLVSAISNW 142 Query: 199 SND 201 ND Sbjct: 143 KND 145 >gi|91228869|ref|ZP_01262773.1| ATP-dependent DNA helicase Rep [Vibrio alginolyticus 12G01] gi|269965552|ref|ZP_06179667.1| ATP-dependent DNA helicase Rep [Vibrio alginolyticus 40B] gi|91187581|gb|EAS73909.1| ATP-dependent DNA helicase Rep [Vibrio alginolyticus 12G01] gi|269829831|gb|EEZ84065.1| ATP-dependent DNA helicase Rep [Vibrio alginolyticus 40B] Length = 671 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 79/228 (34%), Gaps = 48/228 (21%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + S+ + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPSQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGKGESK-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E L LD +++L + ++ Sbjct: 84 FHTLGLNIIKREYKHLGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLR---QL 135 Query: 196 LEISNDEDIETLISDIISNRTA--LKLIFFFFSYLWRRKIIEKSLWSI 241 L ++ + L + R + +F F ++++++ + Sbjct: 136 LSCISNWKNDMLTPEQAKARAQGEQQQLFAFCFDMYQKQMKAYNALDF 183 >gi|332178959|gb|AEE14648.1| UvrD/REP helicase [Thermodesulfobium narugense DSM 14796] Length = 1040 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 4/123 (3%) Query: 35 WVSANAGSGKTHILVQRVLRLLL----ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 VSA+AGSGKT+ L R + LL N + S ++ LT TK AA EM R+LE + S Sbjct: 24 LVSASAGSGKTYTLCMRFCQFLLSKCIQNNNLSNIIALTFTKNAANEMKQRILEWLKRIS 83 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 P ++++ L+ I +V TI +F I + E Sbjct: 84 LGLLSEDDKNNLIELLSLPFNEIVTRSEKLIDLIFNNFYEFQVSTIDSFMSKIFKVMAFE 143 Query: 151 ANI 153 NI Sbjct: 144 TNI 146 >gi|317056307|ref|YP_004104774.1| UvrD/REP helicase [Ruminococcus albus 7] gi|315448576|gb|ADU22140.1| UvrD/REP helicase [Ruminococcus albus 7] Length = 780 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 56/197 (28%), Gaps = 78/197 (39%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL----------------------- 56 +Q + A AGSGKT +LV R+ ++ Sbjct: 20 NPMQQKAVFRVNGPLLILAGAGSGKTTVLVNRIANMIHFGDAYNTTGQIFTDEEAAFIKD 79 Query: 57 -----------------LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSA 99 + P +L +T T AA E+ R+ +I+ Sbjct: 80 YAEGRTDDGKRLAAVIGVRQVRPWNILAITFTNKAAGELKERIEKILGDEGRGIVAA--- 136 Query: 100 EITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAI 159 T H+ C I+++ T FAI Sbjct: 137 -----------------------------------TFHSACVRILRRECGNIGFTPSFAI 161 Query: 160 ADEEQSKKLIEEAKKST 176 D + SK++I+ A +S Sbjct: 162 YDTDDSKRVIKAAMRSL 178 >gi|302558544|ref|ZP_07310886.1| UvrD/Rep family helicase [Streptomyces griseoflavus Tu4000] gi|302476162|gb|EFL39255.1| UvrD/Rep family helicase [Streptomyces griseoflavus Tu4000] Length = 1072 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 54/161 (33%), Gaps = 26/161 (16%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 I T + + P + A AGSGKT ++ RV+ L+ P +L LT T A Sbjct: 16 GIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 75 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E++ RV + + + + + PG + Sbjct: 76 AGELAERVRKALVRAGVTDPDAIDPD-------------------------NPPGEPVIS 110 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T HAF ++ L + + + +L + Sbjct: 111 TYHAFAGRLLTDHGLRVGLEPTSRLLADATRYQLAARVLRE 151 >gi|225075883|ref|ZP_03719082.1| hypothetical protein NEIFLAOT_00906 [Neisseria flavescens NRL30031/H210] gi|224952829|gb|EEG34038.1| hypothetical protein NEIFLAOT_00906 [Neisseria flavescens NRL30031/H210] Length = 666 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 38/158 (24%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q V A AGSGKT ++ Q++ L++ P T+ +T T AA Sbjct: 1 MKLNPQQQAAVKYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV +++ GL + T Sbjct: 61 TEMQERVSKMLPK-------------------------------------SQTRGLTICT 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 H+ I+++ + +F+I D S K+I E Sbjct: 84 FHSLGMKILREEANQIGYKKNFSILDSTDSAKIIGELL 121 >gi|256821245|ref|YP_003145208.1| ATP-dependent DNA helicase Rep [Kangiella koreensis DSM 16069] gi|256794784|gb|ACV25440.1| ATP-dependent DNA helicase Rep [Kangiella koreensis DSM 16069] Length = 674 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 40/161 (24%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHT 71 ++ +++ + E LLA+ V A AGSGKT ++ ++++ L+ P ++ +T T Sbjct: 2 SLPQLNEKQREALLAT--QGPILVLAGAGSGKTSVITRKMVYLIKEKDIPARNIVAVTFT 59 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM RV ++ A + GL Sbjct: 60 NKAAREMKQRVSKLAGAKAT-------------------------------------QGL 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 V T H F +++ + + S+F I D++ S LI++ Sbjct: 83 TVSTFHNFGLNFIRREYKKLRMKSNFTIFDDQDSLALIKDL 123 >gi|94265105|ref|ZP_01288871.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1] gi|93454435|gb|EAT04730.1| Exodeoxyribonuclease V, beta subunit [delta proteobacterium MLMS-1] Length = 1239 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 69/172 (40%), Gaps = 8/172 (4%) Query: 27 ASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLE 84 A+ P + A+AG+GKT + LR +L P +L L+ T+AA AE+ R+ Sbjct: 9 ATLPAAPVQLIEASAGTGKTWSITALYLRFILERQLPVEKILVLSFTEAATAELHERLRA 68 Query: 85 IITAWSHLSDEILSAEITK----IQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 + L+ E + + + ++ + LL L + V TIH FC Sbjct: 69 RLQGAVDAYQRFLNGEQPASDPFLAALTSHSRNPAQDQVLLQRALASIDQAAVLTIHGFC 128 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 ++QQ E+ + F + + ++ L ++ ++ L Sbjct: 129 HRMLQQGAFESGMP--FELELLAELDHYFQQLIHDYLNTVFHRDDPRLLSLL 178 >gi|332159790|ref|YP_004296367.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664020|gb|ADZ40664.1| ATP-dependent DNA helicase Rep [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 674 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 38/161 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ P + +T T AA EM Sbjct: 4 NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRQCGYQPKHIAAVTFTNKAAREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + +AR GL + T H Sbjct: 64 KERVAQTLGR--------------------------KEAR-----------GLMIATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 I+++ + S+F++ D + L+++ L Sbjct: 87 LGLEIIKKEYKALGMKSNFSLFDAQDQLGLLKDLTHKWLED 127 >gi|163737322|ref|ZP_02144740.1| UvrD/REP helicase domain protein [Phaeobacter gallaeciensis BS107] gi|161389926|gb|EDQ14277.1| UvrD/REP helicase domain protein [Phaeobacter gallaeciensis BS107] Length = 1138 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 70/191 (36%), Gaps = 41/191 (21%) Query: 19 QTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAE 77 EQ A++ + + A G+GKT LV R+ L + P ++L LT + AA E Sbjct: 197 PLNEEQRHAAEHDGNALLLKAGPGTGKTQTLVGRLSVLKDRSVDPESILLLTFSNKAAGE 256 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ R + AW E G + T H Sbjct: 257 MTDR---AMLAWP-----------------------------------EAAGSAWIGTFH 278 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD--NNEELKKAFYEI 195 +F ++++F A + S + D ++ L+E+ + D + + ++ Sbjct: 279 SFGLDLLRRFHDRAGLPSDPRLIDATEAIALLEDEFPRLRLTHFNDLWDPTDNLRSILSA 338 Query: 196 LEISNDEDIET 206 + + DE I+ Sbjct: 339 ISRAKDEVIDQ 349 >gi|325576766|ref|ZP_08147381.1| ATP-dependent helicase PcrA [Haemophilus parainfluenzae ATCC 33392] gi|325160972|gb|EGC73090.1| ATP-dependent helicase PcrA [Haemophilus parainfluenzae ATCC 33392] Length = 670 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVSGPCLVLAGAGSGKTRVIINKIAHLIEHCGYLPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------EKSKGLIVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S+ + DE L++E L ++ + L++ I Sbjct: 84 FHTLGFDIIKREYKALGFKSNMTLFDEHDQLALLKELTADVLQ----EDKDLLRELISVI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|153833972|ref|ZP_01986639.1| exodeoxyribonuclease V, beta subunit [Vibrio harveyi HY01] gi|148869710|gb|EDL68691.1| exodeoxyribonuclease V, beta subunit [Vibrio harveyi HY01] Length = 1212 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 11/128 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSHRVLE 84 + A+AG+GKT + LRLLL + +L +T T+AA AE+ R+ Sbjct: 22 LIEASAGTGKTFTIAGLYLRLLLGHGTTDTKHRVPLTVDQILVVTFTEAATAELRDRIRA 81 Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I S++ IQ +A +L+ V TIH FC+ ++ Sbjct: 82 RIHDARIAFARGQSSDPV-IQPLLEEIEAHKQAAEILLQAERQMDEAAVYTIHGFCQRML 140 Query: 145 QQFPLEAN 152 Q E+ Sbjct: 141 TQNAFESG 148 >gi|291563998|emb|CBL42814.1| Superfamily I DNA and RNA helicases [butyrate-producing bacterium SS3/4] Length = 656 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 13/145 (8%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + K++ V A GSGKT ++ R+ RLL A PS +L +T TKAAAA Sbjct: 1 MDFNKAQMTALEHRDGPMMVLAGPGSGKTTVITHRIKRLLEAGVDPSGILVITFTKAAAA 60 Query: 77 EMSHRVLEIITAW------SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP-- 128 EM R L + + D+ L + + ++ ++AR + Sbjct: 61 EMKERFLRLAREEDEKRRKAGKKDDHLPKNGWSLHRPEKSQQSAAEARQRAQGAGNSLEA 120 Query: 129 --GGLKVQTIHAFCEAIMQ---QFP 148 + T H+ I++ +FP Sbjct: 121 AGSRVSFGTFHSVFYHILKWAYRFP 145 >gi|161613408|ref|YP_001587373.1| hypothetical protein SPAB_01122 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362772|gb|ABX66540.1| hypothetical protein SPAB_01122 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 1127 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 83/238 (34%), Gaps = 45/238 (18%) Query: 1 MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60 M+ H Q + ++ + E + ++ + A G+GKT LV RV L Sbjct: 183 MVEHKPRQPEPDM--SLNDKQIEAVR--HRGKAFLLQAGPGTGKTRTLVARVESLFNDGI 238 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 P +L LT + AAAEMS R+ Sbjct: 239 DPRRILLLTFSNKAAAEMSERIAR------------------------------------ 262 Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 L V T H F ++++F ++ + + D ++ + + E + L + Sbjct: 263 --KQPHAAAALWVGTFHGFGLDLLRRFHDLCDLPAEPRLMDRSEAVE-LLEEEFLRLNLV 319 Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 N + + +IL + E ++D + R + + S R+ E++L Sbjct: 320 HYRNLYDPSQNIVDILNAISRAKDE--VTDALQYRALAQEMLNSASSAEERETAERAL 375 >gi|153835500|ref|ZP_01988167.1| ATP-dependent DNA helicase Rep [Vibrio harveyi HY01] gi|148867939|gb|EDL67147.1| ATP-dependent DNA helicase Rep [Vibrio harveyi HY01] Length = 671 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 67/195 (34%), Gaps = 46/195 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGKAESK-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E L LD +++L + ++ Sbjct: 84 FHTLGLNIIKREYKHLGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLR---QL 135 Query: 196 LEISNDEDIETLISD 210 L ++ + L S+ Sbjct: 136 LSCISNWKNDMLTSE 150 >gi|329914689|ref|ZP_08276145.1| ATP-dependent DNA helicase Rep [Oxalobacteraceae bacterium IMCC9480] gi|327545085|gb|EGF30383.1| ATP-dependent DNA helicase Rep [Oxalobacteraceae bacterium IMCC9480] Length = 692 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 39/159 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 ++ +SE + D V A AGSGKT ++ Q++ L+ P + LT T A Sbjct: 18 GLNAPQSEAVHYLD--GPCLVLAGAGSGKTRVITQKIAHLIEDRGYEPKHIAALTFTNKA 75 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ +++ L V Sbjct: 76 ALEMQERIAKLLKQPRQAK------------------------------------QLTVS 99 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T H+ I++Q + + F+I D + L+++ Sbjct: 100 TFHSLGVKILRQEARQLGLKDRFSIMDSDDCFSLVQDLA 138 >gi|318060452|ref|ZP_07979175.1| ATP-dependent DNA helicase [Streptomyces sp. SA3_actG] Length = 1171 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 86/250 (34%), Gaps = 39/250 (15%) Query: 1 MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59 M+ H + + S+ + I T + + P + A AGSGKT ++ RV+ L+ Sbjct: 1 MLTHPA--QLSDLL-GIPFTPEQLACVTAPPAPHVIVAGAGSGKTTVMAARVVWLVGTGT 57 Query: 60 AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119 P +L LT T AAAE++ RV + + A + G+ Sbjct: 58 VAPEQVLGLTFTNKAAAELAERVRRSLVRAGISDPDAPPAPGAEPPGEPL---------- 107 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 + T H+F ++ L + + + +L + Sbjct: 108 -------------ISTYHSFAGRLLDDHGLRLGLEPGSRLLADASRFQLAARVLRE---- 150 Query: 180 IMLDNNEELKKAFYEILEI---SNDEDIETLISDIISNR---TALKLIFFFF-SYLWRRK 232 L + F +++ + E E L+ +R L+ + S RK Sbjct: 151 -APGPYPALTRGFSDLVSDLLSLDGELSEHLVDPAALSRYDEDLLRTLAEARLSNDQLRK 209 Query: 233 IIEKSLWSIA 242 + E + +A Sbjct: 210 VPEAAAARLA 219 >gi|241760514|ref|ZP_04758607.1| ATP-dependent DNA helicase Rep [Neisseria flavescens SK114] gi|241319018|gb|EER55520.1| ATP-dependent DNA helicase Rep [Neisseria flavescens SK114] Length = 666 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 38/158 (24%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q V A AGSGKT ++ Q++ L++ P T+ +T T AA Sbjct: 1 MKLNPQQQAAVKYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV +++ GL + T Sbjct: 61 TEMQERVSKMLPKSQTR-------------------------------------GLTICT 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 H+ I+++ + +F+I D S K+I E Sbjct: 84 FHSLGMKILREEANQIGYKKNFSILDSTDSAKIIGELL 121 >gi|240115748|ref|ZP_04729810.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae PID18] gi|268601426|ref|ZP_06135593.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID18] gi|268585557|gb|EEZ50233.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID18] Length = 274 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A +V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNPQQLEAVRYLGGPLFVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 64 MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 87 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|269955587|ref|YP_003325376.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894] gi|269304268|gb|ACZ29818.1| UvrD/REP helicase [Xylanimonas cellulosilytica DSM 15894] Length = 1192 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 74/222 (33%), Gaps = 24/222 (10%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 S +E + I T + + P V A AGSGKT + RV+ L+ P Sbjct: 62 SAREIARLIGRHEPTDEQVAVIEAPLEPTLVVAGAGSGKTETMAARVVWLIANGLVEPEQ 121 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L LT T+ AA E+ RV + + + + Sbjct: 122 VLGLTFTRKAAGELQTRVTSRLAQLARARTRAGHGPASAADAAIDLLA------------ 169 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 + T +A+ +++ L + + E +L + +S + D Sbjct: 170 -----RPTIATYNAYAASLVTDHGLRLGVEPGSRLLGEANQWQLANQLVESWDEDLGTDR 224 Query: 185 -----NEELKKAFYEILEISND-EDIETLISDIISNRTALKL 220 + E+ E D +D ++ +I +AL L Sbjct: 225 SVSGVVGGVIGLSGELGEHLVDVDDARAMLDAMIERLSALPL 266 >gi|300114405|ref|YP_003760980.1| UvrD/REP helicase [Nitrosococcus watsonii C-113] gi|299540342|gb|ADJ28659.1| UvrD/REP helicase [Nitrosococcus watsonii C-113] Length = 667 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 63/170 (37%), Gaps = 38/170 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 + + ++L V A AGSGKT ++ +++ L+ + +++ +T T A Sbjct: 1 MSNLNPQQRLAVRHIDGPLLVLAGAGSGKTRVITHKIVYLIEQCHVSARSIVAVTFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ +++T GL V Sbjct: 61 AREMKSRIGQLLTKGESR-------------------------------------GLVVS 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 T HA +++ + + F++ D + S+ LI + + +S ++ Sbjct: 84 TFHALGLKFLRREHEVLRLKAGFSLLDAQDSRALICDLYQQEFSSGGEES 133 >gi|62185554|ref|YP_220339.1| DNA helicase II, UvrD [Chlamydophila abortus S26/3] gi|62148621|emb|CAH64393.1| DNA helicase II, UvrD [Chlamydophila abortus S26/3] Length = 637 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 37/162 (22%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 L S+ Q+ A + P V A AG+GKT ++ R+L L+ P +L +T T A Sbjct: 2 LTSELNEAQIAAVTSPLSPILVLAGAGAGKTRVVTCRILHLINEGIAPKEILAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E+ R+L + + V Sbjct: 62 AKELKERILHLCPQAHGSDIPM------------------------------------VC 85 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I+++ N ++F I D+ + KL+++ + Sbjct: 86 TFHSLGVFILRRSIQALNRENNFIIYDQSDTDKLLKQCLQKF 127 >gi|315633354|ref|ZP_07888645.1| ATP-dependent helicase PcrA [Aggregatibacter segnis ATCC 33393] gi|315477854|gb|EFU68595.1| ATP-dependent helicase PcrA [Aggregatibacter segnis ATCC 33393] Length = 673 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 61/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 3 MKLNPQQQQAVEYVSGPCLVLAGAGSGKTRVIINKIAHLIGKCGYLPKQIAAVTFTNKAA 62 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + I E+ GL V T Sbjct: 63 REMKERVAQSIGK-------------------------------------ESSKGLIVST 85 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ ++ + DE L++E L ++ + L+ I Sbjct: 86 FHTLGFDIIKREYKYLGFKANMTLFDEHDQMALLKELTADLLQ----EDKDLLRTLINRI 141 Query: 196 LEISND 201 ND Sbjct: 142 SNWKND 147 >gi|328951182|ref|YP_004368517.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884] gi|328451506|gb|AEB12407.1| UvrD/REP helicase [Marinithermus hydrothermalis DSM 14884] Length = 900 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 16/161 (9%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AG+GKT LV+R L LL A+ P + +T T+AAAA++ R+ + Sbjct: 5 VASAGTGKTTALVRRYLELLEAH-PPHRVAAVTFTRAAAAQLKSRIYAGFSVLEREGAYY 63 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 G P + + L +L P + TIH F +++ + Sbjct: 64 ---------GYVPPPERLPRLFSLKEAVLAAP----IHTIHGFFAELLRLVAPAMGLDPD 110 Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 F + + + E ++ L + + L+ + E Sbjct: 111 FQVLSAGDATGVFREEVRALL--YLRGEDPGLEAPLMHLYE 149 >gi|325201855|gb|ADY97309.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M01-240149] gi|325208393|gb|ADZ03845.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis NZ-05/33] Length = 671 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV E++ GL + T H Sbjct: 64 MQERVAEMLPKSQTR-------------------------------------GLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 87 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|225181788|ref|ZP_03735226.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1] gi|225167562|gb|EEG76375.1| UvrD/REP helicase [Dethiobacter alkaliphilus AHT 1] Length = 694 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 71/208 (34%), Gaps = 49/208 (23%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 + A AGSGKT ++ R+ L+ A P +L LT T AA E+ R+ E++ Sbjct: 1 LLILAGAGSGKTRVITHRIAHLIQQRLAAPWEILALTFTNKAAEELRGRIEELVG----- 55 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 T G+ T HA I+++ Sbjct: 56 ----------------------------------TAPGIWASTFHAASARILREHADRLG 81 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK-----AFYEILEISNDEDIETL 207 TS F I D +I K+ + ++ LD++ K A D D Sbjct: 82 YTSSFVIYDSADQLTVI----KNVMKNLNLDDDTRFKPRGVLSAISRAKNEMMDVDTYDE 137 Query: 208 ISDIISNRTALKLIFFFFSYLWRRKIIE 235 +D +RT K+ + L ++ Sbjct: 138 AADNFYSRTVAKVFRSYQERLRLNNALD 165 >gi|325130511|gb|EGC53266.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis OX99.30304] Length = 670 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 3 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 62 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV E++ GL + T H Sbjct: 63 MQERVAEMLPKSQTR-------------------------------------GLTICTFH 85 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 86 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 121 >gi|254796825|ref|YP_003081662.1| ATP-dependent DNA helicase, UvrD/REP family [Neorickettsia risticii str. Illinois] gi|254590070|gb|ACT69432.1| ATP-dependent DNA helicase, UvrD/REP family [Neorickettsia risticii str. Illinois] Length = 905 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 88/189 (46%), Gaps = 22/189 (11%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 +DP S W++++AG GKT +LV+R + LL++ +LC+T TK A AEM +R+ I+ Sbjct: 5 VTDPNVSVWINSSAGCGKTALLVKRAISLLVSKEK--NILCITFTKVATAEMHNRIFAIL 62 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL-KVQTIHAFCEAIMQ 145 S ++D + + + D + ++ T L ++QT+H+FC ++ Sbjct: 63 GKLSVMNDTEMDEYLLSTINRTVKDPDYVR------KLVHTADALIQIQTLHSFCWQSIR 116 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 ++D + K I E + ++ E + + E + + + Sbjct: 117 -------------MSDPQHLSKEIYEENQHMFCQLLARFIWERCQLSKKTAENTTERKLH 163 Query: 206 TLISDIISN 214 +++ ++SN Sbjct: 164 EMLASLLSN 172 >gi|261400846|ref|ZP_05986971.1| ATP-dependent DNA helicase Rep [Neisseria lactamica ATCC 23970] gi|269209307|gb|EEZ75762.1| ATP-dependent DNA helicase Rep [Neisseria lactamica ATCC 23970] Length = 733 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 3 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 62 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 63 MQERVAKMLPK-------------------------------------PQTRGLTICTFH 85 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 A I+++ +F+I D S K+I E Sbjct: 86 ALGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 121 >gi|15606167|ref|NP_213544.1| ATP-dependent DNA helicase REP [Aquifex aeolicus VF5] gi|2983362|gb|AAC06949.1| ATP-dependent DNA helicase REP [Aquifex aeolicus VF5] Length = 669 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 67/216 (31%), Gaps = 59/216 (27%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + ++ V A AGSGKT L +V L+ P +LC+T T AA Sbjct: 1 MKLNTQQEEAVRHFGSPLLVVAGAGSGKTKTLTHKVEYLIKEKGLKPYEILCITFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ R+ S T Sbjct: 61 KEIKERIKNTFGLELEWS----------------------------------------GT 80 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK---------------STLASI 180 H+ I+++ + I F+IADE+ + +++E K S + Sbjct: 81 FHSVALKILKKDGEKIGIPKDFSIADEKDTTLIVKEILKKYGLKKEPEEVKEKISKVKEN 140 Query: 181 MLDNNEELK---KAFYEILEISNDEDIETLISDIIS 213 + L + + +L + D L+ ++ + Sbjct: 141 FEEPEAWLGVLLEEYQRVLRENKLLDFSDLMRELYN 176 >gi|261380715|ref|ZP_05985288.1| ATP-dependent DNA helicase Rep [Neisseria subflava NJ9703] gi|284796427|gb|EFC51774.1| ATP-dependent DNA helicase Rep [Neisseria subflava NJ9703] Length = 666 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 38/158 (24%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q V A AGSGKT ++ Q++ L++ P T+ +T T AA Sbjct: 1 MKLNPQQQAAVKYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV +++ GL + T Sbjct: 61 TEMQERVSKMLPKSQTR-------------------------------------GLTICT 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 H+ I+++ + +F+I D S K+I E Sbjct: 84 FHSLGMKILREEANQIGYKKNFSILDSTDSAKIIGELL 121 >gi|220919102|ref|YP_002494406.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1] gi|219956956|gb|ACL67340.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1] Length = 1111 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 25/167 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-----PSTLLCLTHTKA 73 + + A AG+GKT +LV R++ + + +T T+ Sbjct: 9 DQADRERAIHARDENVIADAGAGTGKTTLLVARLVERVAPEDDGPALPLGRIAAVTFTRK 68 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA E+ R+ E + +D R L L V Sbjct: 69 AAGELRLRIREALLRALARAD------------------LTELRRRRLADALSALDTAHV 110 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 TIHAF + +++ P+EA ++ + I +++ L++EA + L ++ Sbjct: 111 GTIHAFADRLLRLRPVEARLSPSYDIVEDD--APLVDEAFAAFLHAV 155 >gi|149183792|ref|ZP_01862193.1| PcrA [Bacillus sp. SG-1] gi|148848495|gb|EDL62744.1| PcrA [Bacillus sp. SG-1] Length = 705 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 44/133 (33%), Gaps = 39/133 (29%) Query: 44 KTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEIT 102 KT +L R+ L++ +P +L +T T AA EM R+ I+ + Sbjct: 1 KTRVLTHRIAYLMVEKGVNPYNILAITFTNKAAREMKDRIGNILGGVA------------ 48 Query: 103 KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE 162 + + T H+ C I+++ T +F I D Sbjct: 49 --------------------------DEIWISTFHSMCVRILRRDIDRIGFTRNFTILDT 82 Query: 163 EQSKKLIEEAKKS 175 +I+ K Sbjct: 83 TDQLSVIKSILKD 95 >gi|108756911|ref|YP_630227.1| ATP-dependent DNA helicase UvrD [Myxococcus xanthus DK 1622] gi|108460791|gb|ABF85976.1| ATP-dependent DNA helicase, UvrD/REP family [Myxococcus xanthus DK 1622] Length = 691 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 55/165 (33%), Gaps = 41/165 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN---AHPSTLLCLTH 70 +DL ++ V A AGSGKT ++ R++ LL +L +T Sbjct: 1 MDLSKLNPPQREAVVTLEGPLLVLAGAGSGKTRVITHRIVHLLNERPGLIMARNILAVTF 60 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T AA EM R++ + +A+ +L Sbjct: 61 TNKAATEMKERLVHMAG---------------------------PRAQGVL--------- 84 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V T HAF ++++ FAIAD I A + Sbjct: 85 --VCTFHAFGAEMLREDIHRLGWPKKFAIADMGDQLANIRRAMRE 127 >gi|326576083|gb|EGE26002.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis O35E] Length = 689 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 74/188 (39%), Gaps = 42/188 (22%) Query: 17 ISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74 +S+ QL A + T+ V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 16 MSKLNPRQLEALNHTQGPLLVLAGAGSGKTSVITQKIAHLIENCRIPADRITAVTFTNKA 75 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +I++ E GL V Sbjct: 76 AREMKSRVQKILSH-------------------------------------EKSRGLTVS 98 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-KKSTLASIMLDNNEELKKAFY 193 T H F ++ ++ +F+I D + ++L+ E + L+ + E + +A Sbjct: 99 TFHQFGLQFLRYELKHTSLKPNFSILDADDCQRLLAELMVRDNLS--GAERRELVHEAIK 156 Query: 194 EILEISND 201 +I + ND Sbjct: 157 KISDWKND 164 >gi|51893964|ref|YP_076655.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863] gi|51857653|dbj|BAD41811.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863] Length = 825 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 59/205 (28%), Gaps = 82/205 (40%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLL----------------- 57 L+S +Q A + A AGSGKT ++ R+ L+L Sbjct: 5 LLSGLNEQQREAVLHGQGPLLILAGAGSGKTRVIAHRIAHLILFGPEYDPDAPPPPGLTA 64 Query: 58 --------------------------ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH 91 P +L +T T AAAEM RV +++ Sbjct: 65 DDLEALRLAVEGPGPIDTGAIAHLLGGGIDPWRILAITFTNKAAAEMRERVEQLVG---- 120 Query: 92 LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 +AR + T H+ C ++++ Sbjct: 121 -----------------------PRAREVWAA-----------TFHSTCVRMLRRDIERL 146 Query: 152 NITSHFAIADEEQSKKLIEEAKKST 176 +F I D E + +I + K Sbjct: 147 GYGRNFVILDAEDQQAVIRDCLKRL 171 >gi|86137696|ref|ZP_01056272.1| DNA helicase II, putative [Roseobacter sp. MED193] gi|85825288|gb|EAQ45487.1| DNA helicase II, putative [Roseobacter sp. MED193] Length = 832 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 72/234 (30%), Gaps = 83/234 (35%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 + +D ++ + E + + + A AG+GKT L R++ LL A + +L +T Sbjct: 25 TPYLDGLNPAQREAVECLE--GPVLMLAGAGTGKTKALTARIVHLLNTGSARTNEILAVT 82 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV ++ + G Sbjct: 83 FTNKAAREMKERVGSMLGQPAE-------------------------------------G 105 Query: 130 GLKVQTIHAFCEAIMQQFPL----EANITS------------------------------ 155 + T H+ C ++++ EA + Sbjct: 106 MPWLGTFHSVCVKLLRRHAELISGEAGVGPDEVIDEVTESESPNPYDELGPSAARRRRSS 165 Query: 156 -----HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDI 204 +F I D + +L+++ + + +D + I++ + + Sbjct: 166 VHLKSNFTILDTDDQIRLLKQ----LIRAAGIDEKRWPPRMLAGIIDDWKNRAL 215 >gi|329119934|ref|ZP_08248608.1| exodeoxyribonuclease V beta subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327464090|gb|EGF10401.1| exodeoxyribonuclease V beta subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 1265 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 69/174 (39%), Gaps = 8/174 (4%) Query: 26 LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLE 84 LA +A + A+AG+GKT+ + RL+L P +L +T TKAA AE+ R+ Sbjct: 85 LAIPIGGTALIEASAGTGKTYGIAALFTRLILLEKLPVDKVLVVTFTKAATAELKTRLRA 144 Query: 85 IITAWSH-----LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + ++ + K+ + + + L L + TIH F Sbjct: 145 RLDEALRRIRGDATESPADPFMQKLLAQAAAQEPRERLEMRLKAALSQFDNAAIYTIHGF 204 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 C+ I+ + + F +E ++ +E + + + + + AF Sbjct: 205 CQRILGDYAFLCQVP--FDTELDENGRRELETYAQDFWRLHVAPDPQNARLAFE 256 >gi|302521802|ref|ZP_07274144.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78] gi|302430697|gb|EFL02513.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78] Length = 1171 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 86/250 (34%), Gaps = 39/250 (15%) Query: 1 MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59 M+ H + + S+ + I T + + P + A AGSGKT ++ RV+ L+ Sbjct: 1 MLTHPA--QLSDLL-GIPFTPEQLACVTAPPAPHVIVAGAGSGKTTVMAARVVWLVGTGT 57 Query: 60 AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119 P +L LT T AAAE++ RV + + A + G+ Sbjct: 58 VAPEQVLGLTFTNKAAAELAERVRRSLVRAGISDPDAPPAPGAEPPGEPL---------- 107 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 + T H+F ++ L + + + +L + Sbjct: 108 -------------ISTYHSFAGRLLDDHGLRLGLEPGSRLLADASRFQLAARVLRE---- 150 Query: 180 IMLDNNEELKKAFYEILEI---SNDEDIETLISDIISNR---TALKLIFFFF-SYLWRRK 232 L + F +++ + E E L+ +R L+ + S RK Sbjct: 151 -APGPYPALTRGFSDLVSDLLSLDGELSEHLVDPAALSRYDEDLLRTLAETRLSNDQLRK 209 Query: 233 IIEKSLWSIA 242 + E + +A Sbjct: 210 VPEAAAARLA 219 >gi|326565010|gb|EGE15210.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 103P14B1] gi|326574116|gb|EGE24064.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 101P30B1] Length = 689 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 74/188 (39%), Gaps = 42/188 (22%) Query: 17 ISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74 +S+ QL A + T+ V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 16 MSKLNPRQLEALNHTQGPLLVLAGAGSGKTSVITQKIAHLIENCRIPADRITAVTFTNKA 75 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +I++ E GL V Sbjct: 76 AREMKSRVQKILSH-------------------------------------EKSRGLTVS 98 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-KKSTLASIMLDNNEELKKAFY 193 T H F ++ ++ +F+I D + ++L+ E + L+ + E + +A Sbjct: 99 TFHQFGLQFLRYELKHTSLKPNFSILDADDCQRLLAELMVRDNLS--GAERRELVHEAIK 156 Query: 194 EILEISND 201 +I + ND Sbjct: 157 KISDWKND 164 >gi|308389552|gb|ADO31872.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha710] Length = 671 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 64 MQERVAKMLPKSQTR-------------------------------------GLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 87 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|260948414|ref|XP_002618504.1| hypothetical protein CLUG_01963 [Clavispora lusitaniae ATCC 42720] gi|238848376|gb|EEQ37840.1| hypothetical protein CLUG_01963 [Clavispora lusitaniae ATCC 42720] Length = 924 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 40/178 (22%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L S EQ +A++ + + A G+GKT +LV RV LLL P ++ T TK Sbjct: 84 LFSSLNHEQKMAAEASPGILQIVAGPGTGKTKVLVSRVAHLLLRQRIPPQNIVVTTFTKK 143 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAE+ R+ + D+IL V Sbjct: 144 AAAELVERLR--VLGPQVDVDKIL-----------------------------------V 166 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 T H+ C ++++F + + ++ADE+ + +L+ +A + S D+ KA Sbjct: 167 GTFHSICFRLVRRFGAKIGL-PRVSVADEKDAVQLVAQALEKVDVSAYPDDETAPFKA 223 >gi|89897835|ref|YP_514945.1| DNA/RNA helicase [Chlamydophila felis Fe/C-56] gi|89331207|dbj|BAE80800.1| DNA/RNA helicase [Chlamydophila felis Fe/C-56] Length = 636 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 37/162 (22%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 L + Q+ A + P V A AG+GKT ++ R+L L+ P +L +T T A Sbjct: 2 LTLELNEAQIAAVTAPLSPVLVLAGAGAGKTRVVTCRILHLIKEGIAPREILAVTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E+ R+L S + V Sbjct: 62 AKELKERILHQCPQVSGADIPM------------------------------------VC 85 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I+++ N ++F I D+ + KL+++ + Sbjct: 86 TFHSLGVFILRRSIQALNRENNFIIYDQSDTDKLLKQCLQKF 127 >gi|322514926|ref|ZP_08067941.1| ATP-dependent helicase PcrA [Actinobacillus ureae ATCC 25976] gi|322119114|gb|EFX91268.1| ATP-dependent helicase PcrA [Actinobacillus ureae ATCC 25976] Length = 672 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 73/228 (32%), Gaps = 48/228 (21%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNDQQQQAVEYVKGACLVLAGAGSGKTRVIINKITHLIAHCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL + T Sbjct: 61 REMRERVAHSIGK-------------------------------------ENSKGLTIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S + DE L L ++ +N E K + Sbjct: 84 FHTLGFEILKREYKLLGFKSGMTLFDEHDQLAL--------LKHLLPENVAEDKDLLKAL 135 Query: 196 LEISNDEDIETLISDII--SNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 + ++ + L +++ R + +F F L++ ++ + Sbjct: 136 ISTISNWKNDLLSPEMVLTRLRDERERVFSHFYQLYQNQLKAYNALDF 183 >gi|326796663|ref|YP_004314483.1| ATP-dependent DNA helicase Rep [Marinomonas mediterranea MMB-1] gi|326547427|gb|ADZ92647.1| ATP-dependent DNA helicase Rep [Marinomonas mediterranea MMB-1] Length = 682 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 38/160 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L S + V A AGSGKT ++ ++ L+ S+++ +T T A Sbjct: 12 LKSLNNRQLEAVKQIDGPLLVLAGAGSGKTSVITTKIAYLIQTCGFKASSIVAVTFTNKA 71 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV+ +++ GL + Sbjct: 72 AREMKERVVSMLSKQESR-------------------------------------GLSIS 94 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 T H I+++ +A + F + D + + LI+E Sbjct: 95 TFHTLGLNILRREYRKAGLKEGFTLFDSQDGQALIKEILD 134 >gi|325198582|gb|ADY94038.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis G2136] Length = 671 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 64 MQERVAKMLHKSQTR-------------------------------------GLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 87 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|261377453|ref|ZP_05982026.1| ATP-dependent DNA helicase Rep [Neisseria cinerea ATCC 14685] gi|269146180|gb|EEZ72598.1| ATP-dependent DNA helicase Rep [Neisseria cinerea ATCC 14685] Length = 671 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 64 MQERVAKMLPKSQTR-------------------------------------GLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 87 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|325144733|gb|EGC67028.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M01-240013] Length = 671 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 64 MQERVAKMLPKSQTR-------------------------------------GLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 87 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|296113478|ref|YP_003627416.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis RH4] gi|295921172|gb|ADG61523.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis RH4] gi|326559400|gb|EGE09825.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 46P47B1] gi|326566037|gb|EGE16197.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 12P80B1] gi|326568114|gb|EGE18198.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis BC7] gi|326568531|gb|EGE18603.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis BC1] gi|326572434|gb|EGE22426.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis BC8] gi|326572519|gb|EGE22508.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis CO72] Length = 689 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 74/188 (39%), Gaps = 42/188 (22%) Query: 17 ISQTKSEQLLASDPTR-SAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74 +S+ QL A + T+ V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 16 MSKLNPRQLEALNHTQGPLLVLAGAGSGKTSVITQKIAHLIENCRIPADRITAVTFTNKA 75 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +I++ E GL V Sbjct: 76 AREMKSRVQKILSH-------------------------------------EKSRGLTVS 98 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-KKSTLASIMLDNNEELKKAFY 193 T H F ++ ++ +F+I D + ++L+ E + L+ + E + +A Sbjct: 99 TFHQFGLQFLRYELKHTSLKPNFSILDADDCQRLLAELMVRDNLS--GAERRELVHEAIK 156 Query: 194 EILEISND 201 +I + ND Sbjct: 157 KISDWKND 164 >gi|330957324|gb|EGH57584.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. maculicola str. ES4326] Length = 669 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 65 KERVGTLLRGGEGR-------------------------------------GLTVSTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123 >gi|70733315|ref|YP_263089.1| ATP-dependent DNA helicase Rep [Pseudomonas fluorescens Pf-5] gi|68347614|gb|AAY95220.1| ATP-dependent DNA helicase Rep [Pseudomonas fluorescens Pf-5] Length = 669 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 52/156 (33%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ + GL V T H Sbjct: 65 KERVGTLLRSGEGR-------------------------------------GLTVSTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ + F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHVRLGYKPGFSIFDETDVKALMTDIMQ 123 >gi|291006584|ref|ZP_06564557.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338] Length = 1052 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 72/208 (34%), Gaps = 53/208 (25%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74 L ++ AS + A G+GKT + R+ L+L P L +T T+ A Sbjct: 478 LAGLDPDQRAAASAEAGPLLIVAGPGTGKTRTVTHRIAHLVLERQVPARECLAITFTRRA 537 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM+ R+ + T L V Sbjct: 538 AEEMTERLHALAGP--------------------------------------TAAELTVA 559 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE---------AKKSTLASI--MLD 183 T H+F +++ +A +++ F +AD +++ E A ++ L+ D Sbjct: 560 TFHSFGLQLLRDHHDKAGLSADFGLADASVQHEVLTEVAGDERAAKALRAELSRARRGGD 619 Query: 184 NNEELKKAFYEI---LEISNDEDIETLI 208 +E+ A + L N D + L+ Sbjct: 620 TDEDTAAALHRYTTALRERNLIDFDDLV 647 >gi|167855646|ref|ZP_02478404.1| ATP-dependent DNA helicase [Haemophilus parasuis 29755] gi|167853218|gb|EDS24474.1| ATP-dependent DNA helicase [Haemophilus parasuis 29755] Length = 673 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 71/218 (32%), Gaps = 44/218 (20%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVNGACLVLAGAGSGKTRVIINKIAHLIARCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E+ GL + T Sbjct: 61 REMRERVAHSIGK-------------------------------------ESSRGLTIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S + DE L+ K L + ++ + LK I Sbjct: 84 FHTLGFEILKREHKLLGYKSGMTLFDEHDQLALL----KHLLPENVTEDKDLLKLLVATI 139 Query: 196 LEISND-EDIETLISDIISNRTALKLIFFFFSYLWRRK 232 ND E I+ S+R + F+ Y + K Sbjct: 140 SNWKNDLLSPEQTIALAKSDRDRV-FSHFYDQYQNQLK 176 >gi|145300876|ref|YP_001143717.1| exodeoxyribonuclease V, beta subunit [Aeromonas salmonicida subsp. salmonicida A449] gi|142853648|gb|ABO91969.1| exodeoxyribonuclease V, beta subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 1206 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 22/180 (12%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA-------------------HPSTLLCLTHTKAAA 75 + A+AG+GKT+ + LRLLL + + +L +T T+AA Sbjct: 17 LIEASAGTGKTYTIAGLYLRLLLGHGPLIEEGADAGQPSAHERPLSVTEILVVTFTEAAT 76 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 AE+ R+ I S ++ Q + + AR LL V T Sbjct: 77 AELRGRIRARIHEARLAFLRGESKDVLLTQLLEEVEDHELAARRLLA-AERQMDEAAVFT 135 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH FC+ ++ Q E+ + F +L +A + ++ L + + Sbjct: 136 IHGFCQRMLTQNAFESG--ALFETEFLTDDSQLRLQAVSDYWRAEFYPVDKTLASSVRAL 193 >gi|254670269|emb|CBA05543.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha153] gi|325136509|gb|EGC59113.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M0579] Length = 671 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 64 MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 87 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|229818113|ref|ZP_04448395.1| hypothetical protein BIFANG_03405 [Bifidobacterium angulatum DSM 20098] gi|229784717|gb|EEP20831.1| hypothetical protein BIFANG_03405 [Bifidobacterium angulatum DSM 20098] Length = 1288 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 31/159 (19%) Query: 18 SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + + + P S V A AGSGKT+ + +R++ L+ P +L LT T+ AA Sbjct: 5 TDSPEQAKVINAPVGSDVLVVAGAGSGKTYTMTRRIVSLIEHGVAPERILGLTFTRKAAG 64 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV + A + + + V T Sbjct: 65 ELLSRVSAAVLADDEHDQDRMFLKPA------------------------------VFTY 94 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 AF ++I++Q+ L + E + +L + Sbjct: 95 DAFFQSIVRQYGLLVGFDQNTQPLSEAGALQLAANTVER 133 >gi|325132192|gb|EGC54888.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M6190] gi|325138125|gb|EGC60698.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis ES14902] Length = 671 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 64 MQERVAKMLHKSQTR-------------------------------------GLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 87 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|312884785|ref|ZP_07744483.1| ATP-dependent DNA helicase Rep [Vibrio caribbenthicus ATCC BAA-2122] gi|309367552|gb|EFP95106.1| ATP-dependent DNA helicase Rep [Vibrio caribbenthicus ATCC BAA-2122] Length = 672 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + ++ + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNTNQDQAVKFVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGK-------------------------------------NEAKGLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E L D +++L + Sbjct: 84 FHTLGLNIIKREYKTLGLKAGFSLFDDQDQMALLKE-----LTEQQFDGDKDLLRQLMST 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|261392291|emb|CAX49817.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis 8013] gi|325134572|gb|EGC57216.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M13399] Length = 671 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 64 MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 87 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|261365097|ref|ZP_05977980.1| ATP-dependent DNA helicase Rep [Neisseria mucosa ATCC 25996] gi|288566523|gb|EFC88083.1| ATP-dependent DNA helicase Rep [Neisseria mucosa ATCC 25996] Length = 666 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 38/174 (21%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q V A AGSGKT ++ Q++ L++ P T+ +T T AA Sbjct: 1 MKLNPQQQAAVKYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV +++ GL + T Sbjct: 61 TEMQERVAKMLPK-------------------------------------SQTRGLMICT 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 H+ I+++ +F+I D S K+I E T + ++ Sbjct: 84 FHSLGMKILREEANHIGYKKNFSILDSTDSAKIIGELLGGTGKEALFKAQHQIS 137 >gi|325142627|gb|EGC65018.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis 961-5945] Length = 671 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 64 MQERVAKMLPKSQTR-------------------------------------GLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 87 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|288575116|ref|ZP_06393473.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570857|gb|EFC92414.1| UvrD/REP helicase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 671 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 71/206 (34%), Gaps = 44/206 (21%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 + S ++ ++ + E + V A AGSGKT +L ++ L+ + P +L Sbjct: 18 KDSPVLESLNPRQREAVSYE--GTPLLVLAGAGSGKTRVLTSKLAWLVAERSVPPWRILA 75 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EM RV ++ Sbjct: 76 VTFTNKAAREMKDRVDAMLDGGYPYG---------------------------------- 101 Query: 128 PGGLKVQTIHAFCEAIMQQF--PLEA-NITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 ++ T H+F ++ + LEA +F + D S L++++ K+ Sbjct: 102 ----QISTFHSFGLQMLFRNRDALEARGYRRNFVVFDRGDSLSLVKKSMKAMKLDTSQME 157 Query: 185 NEELKKAFYEILEISNDEDIETLISD 210 + + + S+ ++ I + Sbjct: 158 PSWVLECISKAKTGSDPVSMDGAILE 183 >gi|171058460|ref|YP_001790809.1| exodeoxyribonuclease V subunit beta [Leptothrix cholodnii SP-6] gi|170775905|gb|ACB34044.1| exodeoxyribonuclease V, beta subunit [Leptothrix cholodnii SP-6] Length = 1272 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 81/223 (36%), Gaps = 25/223 (11%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH-------------PSTLLCLTHTKAAAAEM 78 S + A+AG+GKT + LRL+L + P+ +L +T T+AA E+ Sbjct: 13 GSHLIEASAGTGKTWTIAALYLRLVLGHGERESVDSPLPRPLLPAEILVMTFTRAATREL 72 Query: 79 SHRVLEIITAWSH-----LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 S R+ E + + + ++ P +++ A + L E V Sbjct: 73 SDRIRERLIEAARCFRGEAEPAPHDHFLRDLRADYPGEAERRDAAYRLALAAEGMDDAAV 132 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 TI A+C+ ++++ ++ F E +A + + A Sbjct: 133 HTIDAWCQRMLREHAFDS--AQLFDEELEADEAGRRRQAVQDYWRR---EVYPLRGAALE 187 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 +L + + + L S + L L+ L R + + Sbjct: 188 TVLSLWPE--VAELQSQVAGLLGKLDLLEGVPEGLGLRDWLGQ 228 >gi|157960189|ref|YP_001500223.1| ATP-dependent DNA helicase Rep [Shewanella pealeana ATCC 700345] gi|157845189|gb|ABV85688.1| ATP-dependent DNA helicase Rep [Shewanella pealeana ATCC 700345] Length = 671 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 43/168 (25%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 + V A AGSGKT +++ ++ L+ + +T T AA EM RV + + Sbjct: 15 SGPCLVLAGAGSGKTRVIINKIAYLVEKCGYKARNIAAVTFTNKAAREMKERVSQSMGR- 73 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 +AR GL + T H I+++ Sbjct: 74 -------------------------KEAR-----------GLWISTFHTLGLEIIKREHK 97 Query: 150 EANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 + + F++ D++ + L++E + L D +++L + + Sbjct: 98 VVGLKAGFSLFDDQDTLALLKELTQDEL-----DEDKDLLRLLATTIS 140 >gi|7262775|gb|AAF43958.1|U07832_2 helicase I [Pseudomonas aeruginosa] Length = 498 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAYLVQQCGIRAQYIVAVTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 65 KERVGTLLRGGEGK-------------------------------------GLTVSTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHERLGYKPGFSIFDESDIKALLTDIMQ 123 >gi|229821382|ref|YP_002882908.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333] gi|229567295|gb|ACQ81146.1| UvrD/REP helicase [Beutenbergia cavernae DSM 12333] Length = 1136 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 66/178 (37%), Gaps = 12/178 (6%) Query: 7 FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 E + + + T + + P V A AGSGKT + RV L+ + PS + Sbjct: 16 ALELARLLGRPAPTPEQVAVIEAPLEPMLVVAGAGSGKTATMTDRVTYLVANSLVRPSEV 75 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L LT T+ AA+E++ RV + G +D + L Sbjct: 76 LGLTFTRKAASELAERVERHLALLHRHG-----------LGSGAEPADAELSGASSSAGL 124 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 ++ T +A+ ++++ + L + + + +L +S + +D Sbjct: 125 LGEDRPRISTYNAYAGSLVKDYGLRIGVEPDAGLIGDAGRYQLAARVVESWDTDLDVD 182 >gi|154488221|ref|ZP_02029338.1| hypothetical protein BIFADO_01795 [Bifidobacterium adolescentis L2-32] gi|154083372|gb|EDN82417.1| hypothetical protein BIFADO_01795 [Bifidobacterium adolescentis L2-32] Length = 1371 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 64/166 (38%), Gaps = 30/166 (18%) Query: 18 SQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + + P+ V A AGSGKT+ + +R++ L+ P +L LT T+ AA+ Sbjct: 34 TDSPEQAAVIQAPSYEDVVVVAGAGSGKTYTMTRRIITLIDQGISPEKILGLTFTRKAAS 93 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV +T + T++ KP V T Sbjct: 94 ELLSRVSAAVTR-------NQAGRGTRVAFLKPE----------------------VSTY 124 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 AF + I++Q+ L + E + +LI + +M Sbjct: 125 DAFFQTIVRQYGLLVGFDQNTQPLSEAGALQLIHTVLDKHMDQLMA 170 >gi|325205799|gb|ADZ01252.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M04-240196] Length = 671 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 64 MQERVAKMLPKSQTR-------------------------------------GLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 87 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|260436511|ref|ZP_05790481.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus sp. WH 8109] gi|260414385|gb|EEX07681.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus sp. WH 8109] Length = 1206 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 19/171 (11%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT L LRL+ + LL +T T AAA E+ R+ + + Sbjct: 18 LLEASAGTGKTFALAHLCLRLITEADYALEALLVVTFTDAAAEELRSRIGQRLQQSLQGL 77 Query: 94 DEILSAEIT---------KIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 + + + G +P ++ R LL+ LE + TIH FC + Sbjct: 78 ERLEQGMEASAPDTVLADWLSGSEPGEARQRWIRRLLV-ALEQLDRADITTIHGFCRRSL 136 Query: 145 QQFPLEANITSHFAIAD---EEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 ++ L S+ A + + + L E + +L + KA Sbjct: 137 RRLAL-----SNAAAMEPQLDTDASALQAEVVQDLWQQELLSLPPDQFKAL 182 >gi|167746761|ref|ZP_02418888.1| hypothetical protein ANACAC_01473 [Anaerostipes caccae DSM 14662] gi|167653721|gb|EDR97850.1| hypothetical protein ANACAC_01473 [Anaerostipes caccae DSM 14662] Length = 1032 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 49/188 (26%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 K +Q + R+ V A G+GKT LV ++ L+ N PS + +T T AAAEM Sbjct: 462 NKEQQEAVTAENRAVAVIAGPGTGKTKTLVDKIAYLVKERNVSPSQVTAVTFTNQAAAEM 521 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + D + + T H+ Sbjct: 522 RERLAKRLGGKRAVKD------------------------------------MTIGTFHS 545 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C +++Q + +ADE + + +EA D++++ K +I Sbjct: 546 ICLQLLKQQGEDI------ILADEAELLETAKEALNRL------DSDKKPKDFLKQISNF 593 Query: 199 SNDEDIET 206 N+ +E Sbjct: 594 KNNVPMEE 601 >gi|330964285|gb|EGH64545.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. actinidiae str. M302091] Length = 669 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 65 KERVGTLLKGGEGR-------------------------------------GLTVSTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123 >gi|270700810|ref|ZP_06223053.1| DNA helicase II [Haemophilus influenzae HK1212] gi|270315854|gb|EFA27952.1| DNA helicase II [Haemophilus influenzae HK1212] Length = 84 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 3/84 (3%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 + SE +D ++ + E + A P + V A AGSGKT +L R+ L+ + N +++ Sbjct: 2 DISELLDGLNDKQREAVAA--PLGNHLVLAGAGSGKTRVLTHRIAWLIAVENISEGSIMA 59 Query: 68 LTHTKAAAAEMSHRVLEIITAWSH 91 +T T AAAEM HR+ + + Sbjct: 60 VTFTNKAAAEMRHRIQSTLAKHAQ 83 >gi|145629666|ref|ZP_01785463.1| ATP-dependent DNA helicase [Haemophilus influenzae 22.1-21] gi|144978177|gb|EDJ87950.1| ATP-dependent DNA helicase [Haemophilus influenzae 22.1-21] Length = 671 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 59/186 (31%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q T V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIGKCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------EQSKGLLVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S+ + DE L++E L ++ + L + I Sbjct: 84 FHTLGFDIIKREYKALGFKSNMTLFDEHDQFALLKELTADVLK----EDKDLLSELISVI 139 Query: 196 LEISND 201 N+ Sbjct: 140 SNWKNN 145 >gi|86160294|ref|YP_467079.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776805|gb|ABC83642.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C] Length = 1111 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 63/167 (37%), Gaps = 25/167 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-----PSTLLCLTHTKA 73 + A AG+GKT +LV R++ + + +T T+ Sbjct: 9 DQADRDRAIHARDENVIADAGAGTGKTTLLVARLVERVAPEDDGPALPLGRIAAVTFTRK 68 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA E+ R+ E + +D R L L V Sbjct: 69 AAGELRLRIREALLRALARAD------------------LTELRRRRLADALSALDTAHV 110 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 TIH+F + +++ P+EA ++ + I +++ L++EA + L ++ Sbjct: 111 GTIHSFADRLLRLRPVEARLSPSYDIVEDD--APLVDEAFAAFLHAV 155 >gi|319410695|emb|CBY91074.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis WUE 2594] Length = 671 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV E++ GL + T H Sbjct: 64 MQERVAEMLPK-------------------------------------SQTRGLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 87 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|296314222|ref|ZP_06864163.1| ATP-dependent DNA helicase Rep [Neisseria polysaccharea ATCC 43768] gi|296839123|gb|EFH23061.1| ATP-dependent DNA helicase Rep [Neisseria polysaccharea ATCC 43768] Length = 671 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 64 MQERVAKMLPKSQTR-------------------------------------GLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 87 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|285019926|ref|YP_003377637.1| ATP-dependent DNA helicase [Xanthomonas albilineans GPE PC73] gi|283475144|emb|CBA17643.1| probable atp-dependent dna helicase protein [Xanthomonas albilineans] Length = 658 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 67/205 (32%), Gaps = 48/205 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74 + ++ V A AGSGKT ++V+++ L+ + +P + +T T + Sbjct: 1 MHGLNPPQRAAVLHDEGPLLVLAGAGSGKTRVIVEKIAHLIASGRYPAKRIAAITFTNKS 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV + I E GL + Sbjct: 61 AKEMRERVAKRIRN-------------------------------------EAADGLTIC 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HA +Q + F+I D + + I++ +M + Sbjct: 84 TFHALGLKFLQIEHAAVGLKRGFSIFDADDAAAQIKD--------LMPGAKPDAVDDVKN 135 Query: 195 ILEISNDEDI--ETLISDIISNRTA 217 ++ + + + E ++ SNR Sbjct: 136 LISRAKNAGLSPEQAMAAARSNREQ 160 >gi|134100194|ref|YP_001105855.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338] gi|133912817|emb|CAM02930.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338] Length = 1044 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 72/208 (34%), Gaps = 53/208 (25%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74 L ++ AS + A G+GKT + R+ L+L P L +T T+ A Sbjct: 470 LAGLDPDQRAAASAEAGPLLIVAGPGTGKTRTVTHRIAHLVLERQVPARECLAITFTRRA 529 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM+ R+ + T L V Sbjct: 530 AEEMTERLHALAGP--------------------------------------TAAELTVA 551 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE---------AKKSTLASI--MLD 183 T H+F +++ +A +++ F +AD +++ E A ++ L+ D Sbjct: 552 TFHSFGLQLLRDHHDKAGLSADFGLADASVQHEVLTEVAGDERAAKALRAELSRARRGGD 611 Query: 184 NNEELKKAFYEI---LEISNDEDIETLI 208 +E+ A + L N D + L+ Sbjct: 612 TDEDTAAALHRYTTALRERNLIDFDDLV 639 >gi|121635136|ref|YP_975381.1| ATP-dependent DNA helicase [Neisseria meningitidis FAM18] gi|120866842|emb|CAM10600.1| ATP-dependent DNA helicase [Neisseria meningitidis FAM18] Length = 690 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 23 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAE 82 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 83 MQERVAKMLHKSQTR-------------------------------------GLTICTFH 105 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 106 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 141 >gi|326559747|gb|EGE10157.1| ATP-dependent DNA helicase Rep [Moraxella catarrhalis 7169] Length = 689 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 42/188 (22%) Query: 17 ISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74 +S+ QL A + V A AGSGKT ++ Q++ L+ P + +T T A Sbjct: 16 MSKLNPRQLEALNYTQGPLLVLAGAGSGKTSVITQKIAHLIENCRIPADRITAVTFTNKA 75 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +I++ E GL V Sbjct: 76 AREMKSRVQKILSH-------------------------------------EKSRGLTVS 98 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-KKSTLASIMLDNNEELKKAFY 193 T H F ++ ++ +F+I D + ++L+ E + L+ + E + +A Sbjct: 99 TFHQFGLQFLRYELKHTSLKPNFSILDADDCQRLLAELMVRDNLS--GAERRELVHEAIK 156 Query: 194 EILEISND 201 +I + ND Sbjct: 157 KISDWKND 164 >gi|213971722|ref|ZP_03399828.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato T1] gi|301382491|ref|ZP_07230909.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato Max13] gi|302062439|ref|ZP_07253980.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato K40] gi|302133040|ref|ZP_07259030.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923540|gb|EEB57129.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato T1] Length = 669 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 65 KERVGTLLKGGEGR-------------------------------------GLTVSTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123 >gi|33865451|ref|NP_897010.1| exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp. WH 8102] gi|33632620|emb|CAE07432.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp. WH 8102] Length = 1186 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 11/148 (7%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT L LRL+ A P +LL +T T AAAAE+ R+ + + Sbjct: 16 LLEASAGTGKTFALAHLTLRLISEAAMPLPSLLVVTFTDAAAAELRSRIGQRLQDALAGL 75 Query: 94 DEILSAE--------ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + + + + + + P ++ LE + TIH FC ++ Sbjct: 76 EAVARGDALPKADSVLQQWWQQAPQGQSRRDWISRVLMALEQLDAADITTIHGFCSRSLR 135 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAK 173 + + + + E + L++E Sbjct: 136 RQAINSGAAMQQQL--ETDATALVQEVV 161 >gi|331018528|gb|EGH98584.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 669 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 65 KERVGTLLKGGEGR-------------------------------------GLTVSTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123 >gi|330876458|gb|EGH10607.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 669 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 65 KERVGTLLKGGEGR-------------------------------------GLTVSTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123 >gi|28867353|ref|NP_789972.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato str. DC3000] gi|28850587|gb|AAO53667.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tomato str. DC3000] Length = 669 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 65 KERVGTLLKGGEGR-------------------------------------GLTVSTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123 >gi|260770678|ref|ZP_05879608.1| ATP-dependent DNA helicase Rep [Vibrio furnissii CIP 102972] gi|260614259|gb|EEX39448.1| ATP-dependent DNA helicase Rep [Vibrio furnissii CIP 102972] gi|315178566|gb|ADT85480.1| ATP-dependent DNA helicase Rep [Vibrio furnissii NCTC 11218] Length = 671 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCDYKARHIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVGQTLGKAESR-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + + F++ D++ L++E + L + + L++ I Sbjct: 84 FHTLGLNIIRREYKQLGLKAGFSLFDDQDQLALLKELTEKQLD----GDKDLLRQLTSTI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|148378683|ref|YP_001253224.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502] gi|148288167|emb|CAL82235.1| ATP-dependent DNA helicase [Clostridium botulinum A str. ATCC 3502] Length = 884 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 56/164 (34%), Gaps = 41/164 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D+IS Q A T V A AGSGKT L R + L+ + +LC T T Sbjct: 3 LDVISGLNDAQREAVTTTEGYIRVIAGAGSGKTKALTSRYIYLVHELGISTANILCATFT 62 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +I + GL Sbjct: 63 NKAAREMKKRIRTMIG--------------------------------------DNDTGL 84 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + T H FC ++++ N +F + D E ++ + Sbjct: 85 -IGTFHGFCRRLLKEDIYTINYPDNFIVMDNEDMDLVLRIVYED 127 >gi|296169029|ref|ZP_06850691.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896288|gb|EFG75947.1| UvrD/Rep family helicase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 1135 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 24/169 (14%) Query: 1 MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59 MI S E ++ + L T+ + + + P V A AG+GKT + RV+ L+ Sbjct: 44 MIPRFSPAELADALGLFPPTEEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLIANGY 103 Query: 60 AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119 A P +L LT T+ AA ++ RV + + + G P+ ++ Sbjct: 104 AEPGQVLGLTFTRKAAGQLLRRVRSRLARLAGV-------------GLGPDGPAPAEP-- 148 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 G V T HAF ++++ + L + + E + +L Sbjct: 149 --------AGAPTVSTYHAFAGSLIRDYGLLLPVEPDTRLLGETELWQL 189 >gi|15677304|ref|NP_274459.1| ATP-dependent DNA helicase [Neisseria meningitidis MC58] gi|7226688|gb|AAF41807.1| ATP-dependent DNA helicase [Neisseria meningitidis MC58] gi|316984578|gb|EFV63543.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis H44/76] gi|325140608|gb|EGC63128.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis CU385] gi|325199937|gb|ADY95392.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis H44/76] Length = 671 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 64 MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 87 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|307824971|ref|ZP_07655193.1| UvrD/REP helicase [Methylobacter tundripaludum SV96] gi|307734018|gb|EFO04873.1| UvrD/REP helicase [Methylobacter tundripaludum SV96] Length = 667 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 37/177 (20%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 + +Q V A AGSGKT ++ +++ L+ + +T T AA Sbjct: 1 MSKLNPQQQAAVKAIDHPLLVLAGAGSGKTRVITEKIAYLVKQGLPARHIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +RV +++ GL+V T Sbjct: 61 REMKNRVSKLLDN-------------------------------------NQQRGLRVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 H+ I++ + + DE+ L+ +DN + + Sbjct: 84 FHSLGLDILRAESKTLGYKAGITLFDEQDKYTLLRNLISHGAKDCDIDNIDSYSRQI 140 >gi|237801578|ref|ZP_04590039.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024438|gb|EGI04494.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. oryzae str. 1_6] Length = 669 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 65 KERVGTLLRGGEGR-------------------------------------GLTVSTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123 >gi|153931653|ref|YP_001383067.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC 19397] gi|153934674|ref|YP_001386616.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. Hall] gi|152927697|gb|ABS33197.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. ATCC 19397] gi|152930588|gb|ABS36087.1| putative ATP-dependent DNA helicase PcrA [Clostridium botulinum A str. Hall] Length = 884 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 56/164 (34%), Gaps = 41/164 (25%) Query: 14 IDLISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 +D+IS Q A T V A AGSGKT L R + L+ + +LC T T Sbjct: 3 LDVISGLNDAQREAVTTTEGYIRVIAGAGSGKTKALTSRYIYLVHELGISTANILCATFT 62 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ +I + GL Sbjct: 63 NKAAREMKKRIRTMIG--------------------------------------DNDTGL 84 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + T H FC ++++ N +F + D E ++ + Sbjct: 85 -IGTFHGFCRRLLKEDIYTINYPDNFIVMDNEDMDLVLRIVYED 127 >gi|218768450|ref|YP_002342962.1| ATP-dependent DNA helicase [Neisseria meningitidis Z2491] gi|254805228|ref|YP_003083449.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha14] gi|121052458|emb|CAM08794.1| ATP-dependent DNA helicase [Neisseria meningitidis Z2491] gi|254668770|emb|CBA06672.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha14] gi|325128494|gb|EGC51372.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis N1568] Length = 671 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 64 MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 87 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|197124367|ref|YP_002136318.1| UvrD/REP helicase [Anaeromyxobacter sp. K] gi|196174216|gb|ACG75189.1| UvrD/REP helicase [Anaeromyxobacter sp. K] Length = 1111 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 67/167 (40%), Gaps = 25/167 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-----PSTLLCLTHTKA 73 + A AG+GKT +LV R++ + + +T T+ Sbjct: 9 DQADRDRAIHARDENVIADAGAGTGKTTLLVARLVERVAPEDDGPALPLGRIAAVTFTRK 68 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA E+ R+ E + + + +D+ + R L L V Sbjct: 69 AAGELRLRIREALLRAL----------------ARADLTDLRRRR--LADALSALDTAHV 110 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 TIH+F + +++ P+EA ++ + I +++ L++EA + L ++ Sbjct: 111 GTIHSFADRLLRLRPVEARLSPSYDIVEDD--APLVDEAFAAFLHAV 155 >gi|15604312|ref|NP_220828.1| DNA helicase II [Rickettsia prowazekii str. Madrid E] gi|6226298|sp|Q9ZD95|UVRD_RICPR RecName: Full=Probable DNA helicase II homolog gi|3861004|emb|CAA14904.1| DNA HELICASE II (uvrD) [Rickettsia prowazekii] gi|292572062|gb|ADE29977.1| DNA helicase II [Rickettsia prowazekii Rp22] Length = 658 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 43/162 (26%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 + + ++ A + A AG+GKT +L R+ ++ N A P +L +T T A Sbjct: 11 MHTLNAEQKKAALHTEGPLLLLAGAGTGKTKVLTSRIANIIHQNLALPHNILAVTFTNKA 70 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EMS RV +I + GL + Sbjct: 71 AKEMSERVHNLINCY----------------------------------------GLNIG 90 Query: 135 TIHAFCEAIMQQFPLEANITSH--FAIADEEQSKKLIEEAKK 174 T H+ I++ N+ + F I + L+++ K Sbjct: 91 TFHSMAAKILRDQIENLNLGFNNRFTIISHDDQLTLVKDIVK 132 >gi|330469984|ref|YP_004407727.1| UvrD/REP helicase [Verrucosispora maris AB-18-032] gi|328812955|gb|AEB47127.1| UvrD/REP helicase [Verrucosispora maris AB-18-032] Length = 1114 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 23/168 (13%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E ++ + L + T+ + + + P V A AGSGKT + RV+ L+ + P +L Sbjct: 27 ELAKLLRLPAPTREQAAIIAAPVEPLLVVAGAGSGKTETMAARVVWLVANSYVRPEQVLG 86 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T+ AA E+ HRV + + +P Sbjct: 87 LTFTRKAAGELGHRVRTRLDQLIRRLGRRGRDPLDDPLAGEP------------------ 128 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 V T H++ I+ + L A + E +L++ ++ Sbjct: 129 ----TVATYHSYAGRIVTEHGLRAGYEPSTRLLTEASRWQLVDLIVRN 172 >gi|304387165|ref|ZP_07369409.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis ATCC 13091] gi|304338769|gb|EFM04879.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis ATCC 13091] Length = 671 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 64 MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 87 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|254672332|emb|CBA05496.1| ATP-dependent DNA helicase [Neisseria meningitidis alpha275] Length = 671 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 64 MQERVAKMLHKSQTR-------------------------------------GLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 87 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|226365847|ref|YP_002783630.1| ATP-dependent DNA helicase [Rhodococcus opacus B4] gi|226244337|dbj|BAH54685.1| putative ATP-dependent DNA helicase [Rhodococcus opacus B4] Length = 1120 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 85/226 (37%), Gaps = 23/226 (10%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77 T + + + P V A AG+GKT + RV+ L+ P +L LT T+ AA + Sbjct: 19 PTPEQAAVIAAPLGPTLVVAGAGAGKTETMAARVVWLVANGVVDPEAVLGLTFTRKAAQQ 78 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 ++ R+ + + + ++ + S ++R L G +V T H Sbjct: 79 LTTRIRKRLARLAGSE-----------LLRRVDPSGDLRSRIL-------AGEPEVSTYH 120 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE-LKKAFYEIL 196 ++ ++ + L I + E + +L S + D N + +A + Sbjct: 121 SYAGRLLSEHGLLLPIEPSATLLSETELWQLAHRVVSSWDGDLDTDRNPASVTEAVLALA 180 Query: 197 EISNDEDIETLISDIISNRTAL-KLIFFFFSYLWRRKIIEKSLWSI 241 + +E D+ T L KL+ + +R K L I Sbjct: 181 GQLAEHLVEP--DDLREAHTELDKLVHTLPAGPRQRGGPGKDLLDI 224 >gi|15602924|ref|NP_245996.1| hypothetical protein PM1059 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721395|gb|AAK03143.1| Rep [Pasteurella multocida subsp. multocida str. Pm70] Length = 671 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 64/186 (34%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + K +Q T V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNKQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAYLVAKCGYVPRQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------EASRGLIVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H ++++ + ++ + DE L++E A ++ ++ + L++ I Sbjct: 84 FHTLGFDMIKREYKQLGFKANMTLFDEHDQYALLKELT----ADLLCEDKDLLRELISVI 139 Query: 196 LEISND 201 ND Sbjct: 140 SRWKND 145 >gi|291531227|emb|CBK96812.1| Superfamily I DNA and RNA helicases [Eubacterium siraeum 70/3] Length = 949 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 24/158 (15%), Positives = 55/158 (34%), Gaps = 32/158 (20%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 D + ++ + + A G+GKT LV+R+ L+ PS ++ +T T Sbjct: 1 MFDFGIANERQKEAVTCTEGPLLIIAGPGTGKTFTLVKRIAYLVFEKGVKPSEIMAITFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + AA ++ R+ + +S + + Sbjct: 61 EKAAHQLVTRISDEFLRYSGCENI-------------------------------NIDEM 89 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + T H+ C +M+++ + I D + + ++ Sbjct: 90 YIGTFHSVCLRLMKEYSELLPFDADKRIIDSFEQQYMV 127 >gi|262404900|ref|ZP_06081454.1| ATP-dependent DNA helicase Rep [Vibrio sp. RC586] gi|262348984|gb|EEY98123.1| ATP-dependent DNA helicase Rep [Vibrio sp. RC586] Length = 671 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 1 MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKMAYLVQQCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + GL V T Sbjct: 61 REMKERVAQTLGKGESR-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ L++E L LD +++L + Sbjct: 84 FHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-----LTEKQLDGDKDLLRLLLST 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|53803604|ref|YP_114566.1| ATP-dependent DNA helicase Rep [Methylococcus capsulatus str. Bath] gi|53757365|gb|AAU91656.1| ATP-dependent DNA helicase Rep [Methylococcus capsulatus str. Bath] Length = 667 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 38/159 (23%) Query: 17 ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 ++ +Q A V A AGSGKT ++ +++ L+ ++ +T T AA Sbjct: 1 MNGLNPQQHAAVTTLDCPLLVIAGAGSGKTRVITEKIAYLIRQGTPARHIVAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV ++ D+ L GL V T Sbjct: 61 REMKSRVGKL------ADDKSLR-------------------------------GLTVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 HA I+++ + S +I DE+ + L+ E + Sbjct: 84 FHALGLEIVRREHKALELKSAISIFDEQDRQALLRELIR 122 >gi|329118947|ref|ZP_08247642.1| ATP-dependent helicase PcrA [Neisseria bacilliformis ATCC BAA-1200] gi|327464975|gb|EGF11265.1| ATP-dependent helicase PcrA [Neisseria bacilliformis ATCC BAA-1200] Length = 671 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 40/157 (25%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 ++ +++E + +V A AGSGKT ++ +++ ++ P T+ +T T AA Sbjct: 3 LNPSQTEAVRYL--GGPLFVLAGAGSGKTRVITEKIAYMITQAGYKPHTIAAITFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV +++ GL V T Sbjct: 61 REMQERVAKMLPRSQTR-------------------------------------GLTVCT 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 H+ I+++ A + +F+I D S K+I E Sbjct: 84 FHSLGMRILREEAHAAGLKKNFSILDATDSGKIIGEI 120 >gi|317471574|ref|ZP_07930920.1| UvrD/REP helicase [Anaerostipes sp. 3_2_56FAA] gi|316900953|gb|EFV22921.1| UvrD/REP helicase [Anaerostipes sp. 3_2_56FAA] Length = 584 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 69/188 (36%), Gaps = 49/188 (26%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 K +Q + R+ V A G+GKT LV ++ L+ N PS + +T T AAAEM Sbjct: 14 NKEQQEAVTAENRAVAVIAGPGTGKTKTLVDKIAYLVKERNVSPSQITAVTFTNQAAAEM 73 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + + D + + T H+ Sbjct: 74 RERLAKRLGGKRAVKD------------------------------------MTIGTFHS 97 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 C +++Q + +ADE + + +EA D++++ K +I Sbjct: 98 ICLQLLKQQGEDI------ILADEAELLETAKEALNRL------DSDKKPKDFLKQISNF 145 Query: 199 SNDEDIET 206 N+ +E Sbjct: 146 KNNVPMEE 153 >gi|119896478|ref|YP_931691.1| ATP-dependent DNA helicase [Azoarcus sp. BH72] gi|119668891|emb|CAL92804.1| ATP-dependent DNA helicase [Azoarcus sp. BH72] Length = 664 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 38/155 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT ++ ++ L+ P+ + +T T AA EM Sbjct: 6 NPPQREAIHYLNGPCLVLAGAGSGKTRVITHKIAHLINECGLSPTNVGAITFTNKAAKEM 65 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ + PGGL V T HA Sbjct: 66 QERVAHLMGGRA-------------------------------------PGGLTVCTFHA 88 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 I++Q L + F+I D + +++ + Sbjct: 89 LGVRIIRQEALHCGLKPQFSILDASDAVQIVADVA 123 >gi|327479161|gb|AEA82471.1| ATP-dependent DNA helicase Rep [Pseudomonas stutzeri DSM 4166] Length = 669 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 59/174 (33%), Gaps = 40/174 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLVQNCGIQARHIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ S+AR GL V T H Sbjct: 65 KERVGTLLKG--------------------------SEAR-----------GLTVSTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 I+++ F+I D+ K L+ + + D +E+K Sbjct: 88 LGMNIIRKEYARLGYKPGFSIFDDGDIKTLLTDIMQK--EYAGDDGADEIKNLI 139 >gi|152978361|ref|YP_001343990.1| ATP-dependent DNA helicase Rep [Actinobacillus succinogenes 130Z] gi|150840084|gb|ABR74055.1| ATP-dependent DNA helicase Rep [Actinobacillus succinogenes 130Z] Length = 675 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQTAVEFTSGPCLVLAGAGSGKTRVIINKIAYLIGKCGYLPRQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I GL V T Sbjct: 61 REMKERVAHSIGKGQTK-------------------------------------GLIVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ ++ + DE L++E L ++ + L++ I Sbjct: 84 FHTLGFDIIKREYKYLGFKANMTLFDEHDQMALLKELTADYLQ----EDKDLLRELVMRI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|323483647|ref|ZP_08089031.1| hypothetical protein HMPREF9474_00780 [Clostridium symbiosum WAL-14163] gi|323403074|gb|EGA95388.1| hypothetical protein HMPREF9474_00780 [Clostridium symbiosum WAL-14163] Length = 109 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 8/106 (7%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAA 74 ++ TK ++ + R+ VSA AGSGKT +LV+R++R++ + LL +T TKAA Sbjct: 3 VNWTKEQKAVIESRNRNLLVSAAAGSGKTAVLVERIIRMITGDSPIDIDRLLVMTFTKAA 62 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 AAEM R+ I + I +P++ + + R L Sbjct: 63 AAEMRERIQAAIEKNWKKIPGM------SICSSRPSRYSLPRLRRL 102 >gi|88808889|ref|ZP_01124398.1| hypothetical protein WH7805_04336 [Synechococcus sp. WH 7805] gi|88786831|gb|EAR17989.1| hypothetical protein WH7805_04336 [Synechococcus sp. WH 7805] Length = 1229 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 93/232 (40%), Gaps = 32/232 (13%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT L V+RL++ LL +T T+AAA E+ R+ + + Sbjct: 25 LLEASAGTGKTFALAHLVMRLVVERELKLDALLVVTFTEAAADELRDRIGKRLDGALQGL 84 Query: 94 DEILSAE-----------ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 + + + ++ +++ LL+ LE + TIH FC Sbjct: 85 LRLEQGDDGGGTASDAVLLEWLEEHGRDRAGRRNKASLLLEALEALERADITTIHGFCRR 144 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF---------- 192 +++ LE+ + ++ D+ Q+ L+EE +L + Sbjct: 145 TLRRQALESGRSLDLSLDDDPQT--LVEEVAHDLWREQILTLDPGDVAGLLQTGLREDTL 202 Query: 193 -YEILEISNDEDIE-TLISDIISNRTALKLIFFFFSYLWRR-KIIE-KSLWS 240 E+L + D + ++ I+ AL+ IF LW + + + LWS Sbjct: 203 TAELLRLDGDCGVRIAEHAETINPEDALRDIF----PLWLKQRWLHFHELWS 250 >gi|218887057|ref|YP_002436378.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758011|gb|ACL08910.1| UvrD/REP helicase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 789 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 76/213 (35%), Gaps = 38/213 (17%) Query: 13 TIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 ID ++ Q A+ V A AGSGKT +V R+ L+ S +L LT T Sbjct: 1 MIDYRNELNPAQYQAATTLEGPLLVIAGAGSGKTRTIVYRLANLVEQGVPASAILLLTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + +A EM HR ++ + + +T +QG Sbjct: 61 RKSAREMLHRAGRLLEHSATAAVHGGVHGVTGVQG------------------------- 95 Query: 132 KVQTIHAFCEAIMQQF---PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 T HAF ++++QF EA + D I +A + + + + Sbjct: 96 --GTFHAFAYSVLRQFRPSGYEAG---DLTVMDGAD----IVDAVRHCKDNQGIGKGDRS 146 Query: 189 KKAFYEILEISNDEDIETLISDIISNRTALKLI 221 I+ + + + L D + R A L+ Sbjct: 147 FPRTQNIVGLISKSRNKELDIDEVIRREAFHLL 179 >gi|325204434|gb|ADY99887.1| ATP-dependent DNA helicase Rep [Neisseria meningitidis M01-240355] Length = 671 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 64 MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 87 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|120613110|ref|YP_972788.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1] gi|120591574|gb|ABM35014.1| UvrD/REP helicase [Acidovorax citrulli AAC00-1] Length = 689 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 53/159 (33%), Gaps = 39/159 (24%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 + + QL A V A AGSGKT ++ ++ RL+ P + +T T A Sbjct: 1 MSAGLNLAQLQAVHYTEGPCLVLAGAGSGKTRVITMKIGRLIETGLEPRRIAAITFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM R +I + V Sbjct: 61 AAEMRERAQHLIGRAAKDVL--------------------------------------VC 82 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T HA ++++ + F+I D + +I++A Sbjct: 83 TFHALGVRMVREDGHVLGLKPQFSILDADDVTGIIKDAA 121 >gi|325841946|ref|ZP_08167523.1| UvrD/REP helicase [Turicibacter sp. HGF1] gi|325489779|gb|EGC92134.1| UvrD/REP helicase [Turicibacter sp. HGF1] Length = 849 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 43/181 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 E + ++ +SE + S+ + V A AG+GKT ++ RV + +LCLT T Sbjct: 5 EELTGLNDAQSE--VVSNLNDNLLVMAPAGTGKTKVISLRVAGFINQGIEAKEILCLTFT 62 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 A E++ R+L++ + + Sbjct: 63 NKACHELAERLLKVTNGLAK--------------------------------------EV 84 Query: 132 KVQTIHAFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKS--TLASIMLDNNEEL 188 V+T H+FC ++++ I+ F++ DEE K L+ + K +A + +EL Sbjct: 85 FVKTFHSFCFQLIKEEAKNFGKISRDFSVMDEEDGKFLVRQLMKDDYVIADLAYQYLQEL 144 Query: 189 K 189 K Sbjct: 145 K 145 >gi|293375967|ref|ZP_06622227.1| UvrD/REP helicase [Turicibacter sanguinis PC909] gi|292645404|gb|EFF63454.1| UvrD/REP helicase [Turicibacter sanguinis PC909] Length = 849 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 43/181 (23%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 E + ++ +SE + S+ + V A AG+GKT ++ RV + +LCLT T Sbjct: 5 EELTGLNDAQSE--VVSNLNDNLLVMAPAGTGKTKVISLRVAGFINQGIEAKEILCLTFT 62 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 A E++ R+L++ + + Sbjct: 63 NKACHELAERLLKVTNGLAK--------------------------------------EV 84 Query: 132 KVQTIHAFCEAIMQQFPLEAN-ITSHFAIADEEQSKKLIEEAKKS--TLASIMLDNNEEL 188 V+T H+FC ++++ I+ F++ DEE K L+ + K +A + +EL Sbjct: 85 FVKTFHSFCFQLIKEEAKNFGKISRDFSVMDEEDGKFLVRQLMKDDYVIADLAYQYLQEL 144 Query: 189 K 189 K Sbjct: 145 K 145 >gi|119026323|ref|YP_910168.1| ATP-dependent DNA helicase [Bifidobacterium adolescentis ATCC 15703] gi|118765907|dbj|BAF40086.1| widely conserved ATP-dependent DNA helicase [Bifidobacterium adolescentis ATCC 15703] Length = 1356 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 64/166 (38%), Gaps = 30/166 (18%) Query: 18 SQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + + P+ V A AGSGKT+ + +R++ L+ P +L LT T+ AA+ Sbjct: 24 TDSPEQAAVIQAPSYEDVVVVAGAGSGKTYTMTRRIITLIDQGISPEKILGLTFTRKAAS 83 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV +T + T++ KP V T Sbjct: 84 ELLSRVSAAVTR-------NQAGRGTRVAFLKPE----------------------VSTY 114 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 AF + I++Q+ L + E + +LI + +M Sbjct: 115 DAFFQTIVRQYGLLVGFDQNTQPLSEAGALQLIHTVLDKHMDQLMA 160 >gi|312879906|ref|ZP_07739706.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260] gi|310783197|gb|EFQ23595.1| UvrD/REP helicase [Aminomonas paucivorans DSM 12260] Length = 659 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 78/226 (34%), Gaps = 50/226 (22%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 S ++ ++ + E +L S V A AGSGKT +L +++ L+ P +L +T Sbjct: 7 SPLLEGLNPPQREAVL--HHESSQLVLAGAGSGKTRVLTRKIAFLIRELGISPGRILAVT 64 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM RV +++ +AR Sbjct: 65 FTNKAAGEMRERVEKLLG---------------------------ERAR----------- 86 Query: 130 GLKVQTIHAFCEAIMQQF---PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 GL+V T H++ +++ E + D K L K LA LD Sbjct: 87 GLRVSTFHSYGLHFLRRHEGILQEMGYGRPLLVFDRSDQKGL----VKRLLAEKNLDEKR 142 Query: 187 ELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRK 232 E + DE L S ++ L ++ + + + Sbjct: 143 FDPGWLLETFSTAKDE--RDLSSGTVNLEGMLGQLYLLYEQRMKEQ 186 >gi|51473636|ref|YP_067393.1| DNA helicase II [Rickettsia typhi str. Wilmington] gi|81390099|sp|Q68WT1|UVRD_RICTY RecName: Full=DNA helicase II gi|51459948|gb|AAU03911.1| DNA helicase II [Rickettsia typhi str. Wilmington] Length = 658 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 57/162 (35%), Gaps = 43/162 (26%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 + + ++ A + A AG+GKT +L R+ ++ N A P +L +T T A Sbjct: 11 MHTLNSEQKKAALHTEGPLLLLAGAGTGKTKVLTSRIANIIQQNLALPHNILAVTFTNKA 70 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EMS RV +I + G+ + Sbjct: 71 AKEMSERVHNLINCY----------------------------------------GVNIG 90 Query: 135 TIHAFCEAIMQQFP--LEANITSHFAIADEEQSKKLIEEAKK 174 T H+ I++ L + + F I + L+++ K Sbjct: 91 TFHSMAAKILRDQIENLNLGLNNKFTIISHDDQLTLVKDIVK 132 >gi|159900168|ref|YP_001546415.1| UvrD/REP helicase [Herpetosiphon aurantiacus ATCC 23779] gi|159893207|gb|ABX06287.1| UvrD/REP helicase [Herpetosiphon aurantiacus ATCC 23779] Length = 641 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 41/162 (25%) Query: 16 LISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 + SEQ A V A AGSGKT +L R+ L+ A +++ +T T A Sbjct: 1 MFDTLNSEQRAAVMAQLGPVLVKAGAGSGKTRVLTYRIAYLIEQGASSDSIVSVTFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+E+ R+ +++ S GL Sbjct: 61 ASELRTRLRDLLGKRSR--------------------------------------GLTAG 82 Query: 135 TIHAFCEAIMQQF--PLEANITSHFAIADEEQSKKLIEEAKK 174 T HA C +++Q N T++F I ++ +L+++A Sbjct: 83 TFHAICGKLLRQHINGRIRNYTANFTIYAGDEQLQLVQQAMD 124 >gi|302188185|ref|ZP_07264858.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. syringae 642] Length = 669 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 65 KERVGTLLKGGEGR-------------------------------------GLTVSTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123 >gi|326319149|ref|YP_004236821.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375985|gb|ADX48254.1| UvrD/REP helicase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 688 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 53/159 (33%), Gaps = 39/159 (24%) Query: 16 LISQTKSEQLLASD-PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 + + QL A V A AGSGKT ++ ++ RL+ P + +T T A Sbjct: 1 MSAGLNLAQLQAVHYTEGPCLVLAGAGSGKTRVITMKIGRLIETGLEPRRIAAITFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAEM R +I + V Sbjct: 61 AAEMRERAQHLIGRAAKDVL--------------------------------------VC 82 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T HA ++++ + F+I D + +I++A Sbjct: 83 TFHALGVRMVREDGHVLGLKPQFSILDADDVTGIIKDAA 121 >gi|161870316|ref|YP_001599486.1| ATP-dependent DNA helicase [Neisseria meningitidis 053442] gi|161595869|gb|ABX73529.1| ATP-dependent DNA helicase [Neisseria meningitidis 053442] Length = 690 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 23 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKYLIVNVGYLPHTVAAITFTNKAAAE 82 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 83 MQERVAKMLHK-------------------------------------SQTRGLTICTFH 105 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 106 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 141 >gi|257075414|ref|ZP_05569775.1| UvrD/REP helicase [Ferroplasma acidarmanus fer1] Length = 889 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 90/217 (41%), Gaps = 37/217 (17%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMS 79 + + +R + A AG+GKT +L +R++ LLL +A P +++ T T AA EM Sbjct: 13 NEQIKPVNSSSRYIKILAGAGAGKTEVLTRRIVNLLLNTDAPPESIVAFTFTDKAAKEMK 72 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 +RVL+ I + + +IL + TIH+F Sbjct: 73 NRVLKRIQEIAPQFNTS--------------------------SILNMY----IGTIHSF 102 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C ++Q+ + + + ++ +++ L + + F + L+I Sbjct: 103 CLRLLQEHF---DYGMYKTVDQNQEMAYILQNGYTYGLKQVEGSTYSDKCINFQKTLDIY 159 Query: 200 NDEDI-ETLISDIISNRTALKLIFFFFSYLWRRKIIE 235 E+I I+++ N +K++ + + + + KII Sbjct: 160 YGEEIPRDNINEL--NPNFIKILDRYENSMNKNKIIS 194 >gi|146305294|ref|YP_001185759.1| ATP-dependent DNA helicase Rep [Pseudomonas mendocina ymp] gi|145573495|gb|ABP83027.1| ATP-dependent DNA helicase Rep [Pseudomonas mendocina ymp] Length = 669 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 59/174 (33%), Gaps = 40/174 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLVQNCGIQARHIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ S+AR GL V T H Sbjct: 65 KERVGTLLRG--------------------------SEAR-----------GLTVSTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 I+++ F+I D+ K L+ + + D +E+K Sbjct: 88 LGMNIIRKEYARLGYKPGFSIFDDGDIKALLTDIMQK--EYAGDDGADEVKNLI 139 >gi|170717349|ref|YP_001784458.1| ATP-dependent DNA helicase Rep [Haemophilus somnus 2336] gi|168825478|gb|ACA30849.1| ATP-dependent DNA helicase Rep [Haemophilus somnus 2336] Length = 670 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNAQQQQAVEYTQGPCLVLAGAGSGKTRVIINKIAYLIEQCGYLPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I K R LL V T Sbjct: 61 REMKDRVAHSIGK--------------------------EKTRGLL-----------VST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I++Q ++ + DE L++E L ++ E L++ I Sbjct: 84 FHTLGFDIIKQEYKHLGFKANMTLFDEYDQMALLKEITADLLK----EDKELLQETVSAI 139 Query: 196 LEISND 201 ND Sbjct: 140 SRWKND 145 >gi|328947535|ref|YP_004364872.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489] gi|328447859|gb|AEB13575.1| UvrD/REP helicase [Treponema succinifaciens DSM 2489] Length = 1265 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 18/137 (13%) Query: 24 QLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHTKAAAAEMSHR 81 Q+ A +A VSA AGSGKT +L R LL+ N H +L LT TK AA+E+ R Sbjct: 26 QIKAITKKDNAVVSAGAGSGKTDVLALRYAFLLMTDENIHIKNILALTFTKEAASEIYDR 85 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + + + ++ D K L L+ K+QT+ A+ Sbjct: 86 IYKKLNSFVKFLD----------------NDKYPKQVKLAKRALDEFADAKIQTLDAYSG 129 Query: 142 AIMQQFPLEANITSHFA 158 ++++ I F Sbjct: 130 SLVRIAASRYGIRPDFT 146 >gi|221135348|ref|ZP_03561651.1| ATP-dependent DNA helicase Rep [Glaciecola sp. HTCC2999] Length = 407 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 66/182 (36%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAA 75 + ++ + V A AGSGKT ++ ++ L+ P+ + +T T AA Sbjct: 1 MKLNPAQDQAVKFISGPCLVLAGAGSGKTRVITNKIAHLVRECEMPARFIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + +T ++AR GLKV T Sbjct: 61 REMKERVAQTLTK--------------------------AEAR-----------GLKVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I++ + F++ D++ + L+++ L + D +++ K Sbjct: 84 FHTLGLNIIKSNVRPLGLKPGFSLFDDKDTMALLKD-----LTEVEFDGDKDQLKLLQSC 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|52424468|ref|YP_087605.1| UvrD protein [Mannheimia succiniciproducens MBEL55E] gi|52306520|gb|AAU37020.1| UvrD protein [Mannheimia succiniciproducens MBEL55E] Length = 671 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYTSGPCLVLAGAGSGKTRVIINKIAYLIEKCGYLPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------ELSKGLIVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ ++ + DE L++E + L + + L++ I Sbjct: 84 FHTLGFDIIKREYKHLGFKANMTLFDEHDQMALLKELTEDYLQQ----DKDLLRELISVI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|302878356|ref|YP_003846920.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2] gi|302581145|gb|ADL55156.1| UvrD/REP helicase [Gallionella capsiferriformans ES-2] Length = 666 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 55/162 (33%), Gaps = 39/162 (24%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 ++S+ +EQ A+ V A AGSGKT ++ ++ L+ + +T T Sbjct: 1 MLSKLNTEQREAAMYLDGPLLVLAGAGSGKTRVITHKIAYLVEECGYAARNIAAITFTNK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++ S GL V Sbjct: 61 AANEMRERVSLLLPGKSAK-------------------------------------GLVV 83 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T H+ I++ F+I D + K+I E S Sbjct: 84 STFHSLGMTILRAEAKLLGYKPQFSIFDSSDTFKIISELTNS 125 >gi|163748686|ref|ZP_02155939.1| ATP-dependent DNA helicase Rep [Shewanella benthica KT99] gi|161331796|gb|EDQ02600.1| ATP-dependent DNA helicase Rep [Shewanella benthica KT99] Length = 670 Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 66/182 (36%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT +++ ++ L+ T+ +T T AA Sbjct: 1 MKLNPRQDEAVHYVSGPCLVLAGAGSGKTRVIINKIAHLVQNCGYKAKTIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + +AR GL + T Sbjct: 61 REMKERVAKSMGR--------------------------KEAR-----------GLWIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + F++ D++ + L+++ + L D +++L ++ Sbjct: 84 FHTLGLEIIKREHKVVGLKAGFSLFDDQDTLALLKDLTEDEL-----DGDKDLLRSLMST 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|289624144|ref|ZP_06457098.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648073|ref|ZP_06479416.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. aesculi str. 2250] gi|330867953|gb|EGH02662.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 669 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 65 KERVGTLLRGGEGR-------------------------------------GLTVSTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123 >gi|298484682|ref|ZP_07002785.1| ATP-dependent DNA helicase Rep [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160822|gb|EFI01840.1| ATP-dependent DNA helicase Rep [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 669 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 65 KERVGTLLRGGEGR-------------------------------------GLTVSTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123 >gi|260914127|ref|ZP_05920600.1| exodeoxyribonuclease V beta subunit [Pasteurella dagmatis ATCC 43325] gi|260631760|gb|EEX49938.1| exodeoxyribonuclease V beta subunit [Pasteurella dagmatis ATCC 43325] Length = 1234 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 16/163 (9%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT+ + LRLLL +L +T T+AA E+ R+ E Sbjct: 19 CLIEASAGTGKTYTIGSLYLRLLLQAGVENFPLPLTVEQILVVTFTEAATNELKGRIRER 78 Query: 86 ITAWSHL------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 I E +E +Q + D+ A L ++ + TIH F Sbjct: 79 IHQTKQAFIAYKEQGESALSEEPFLQELIQHIEDIDIAIQRLKIAEQSMDLAAIYTIHGF 138 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 C ++ Q+ + + HF + + +LI+ Sbjct: 139 CRRMLMQYAFNSGV--HFNLELVKDEGELIQHCFNEYWREQFY 179 >gi|315634341|ref|ZP_07889628.1| exodeoxyribonuclease V beta subunit [Aggregatibacter segnis ATCC 33393] gi|315476931|gb|EFU67676.1| exodeoxyribonuclease V beta subunit [Aggregatibacter segnis ATCC 33393] Length = 1220 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 85/239 (35%), Gaps = 37/239 (15%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEI- 85 + A+AG+GKT+ + LRLLL + +L +T T+ A E+ ++ E Sbjct: 16 LIEASAGTGKTYTMGSLYLRLLLQAGENTFPYALNVEQILVVTFTEMATEELKRKIRERI 75 Query: 86 ------ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 +TA+ D + + ++ + +D+ A L + + TIH F Sbjct: 76 YDAKQKLTAYQQTQDSAVFGQDDFLRELVASITDLPLAIQRLTLAEQNMDLAAIYTIHGF 135 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C ++ Q+ + + HF + + +L+ + + + + L Sbjct: 136 CRRMLMQYAFNSGV--HFNLELSGEEDELLLHLAQKIWREHFYSQPYAVVEFIQKNLVSP 193 Query: 200 ND--------------------EDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 ++ E + +S T + + ++K +EK + Sbjct: 194 SNIVTKIKKFAGIELKLPEKRPHFFEGTFEEFLSKLTDYSQVLIAQTQELKQKWLEKEV 252 >gi|71735974|ref|YP_272392.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482511|ref|ZP_05636552.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tabaci ATCC 11528] gi|71556527|gb|AAZ35738.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326736|gb|EFW82781.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. glycinea str. B076] gi|320331290|gb|EFW87233.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. glycinea str. race 4] gi|330881655|gb|EGH15804.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. glycinea str. race 4] gi|330985668|gb|EGH83771.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. lachrymans str. M301315] gi|331012841|gb|EGH92897.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 669 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 65 KERVGTLLRGGEGR-------------------------------------GLTVSTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123 >gi|315185499|gb|EFU19269.1| UvrD/REP helicase [Spirochaeta thermophila DSM 6578] Length = 683 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 78/222 (35%), Gaps = 52/222 (23%) Query: 14 IDLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + + +EQ A + A AGSGKT ++ ++ L+ A ++L +T T Sbjct: 4 LSYLETLNAEQREAVFHSGSPLLILAGAGSGKTRVITTKIAYLVDALGIPARSILAVTFT 63 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R L++ G+ Sbjct: 64 NKAAREMYERALQLSPRTE---------------------------------------GV 84 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 ++T H+F +++ + + FAI D+E ++ L L+SI+ + Sbjct: 85 MIKTFHSFGVWLLRLYGERLGLARDFAIYDDEDARAL--------LSSILDGSQRRHLSR 136 Query: 192 FYEILEISNDEDI--ETLISDIISNRTALKLIFFFFSYLWRR 231 + + + D + E +S I+ + ++ + R Sbjct: 137 YAWAISRAKDYALGPEDDLSSILED-DDFPELYARYEDRLRD 177 >gi|308176361|ref|YP_003915767.1| ATP-dependent DNA helicase PcrA [Arthrobacter arilaitensis Re117] gi|307743824|emb|CBT74796.1| ATP-dependent DNA helicase PcrA [Arthrobacter arilaitensis Re117] Length = 792 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 69/196 (35%), Gaps = 44/196 (22%) Query: 12 ETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTH 70 E + ++ + E + + + A AGSGKT +L R+ L+ A P +L +T Sbjct: 22 ELLVGMNPQQEEAVRYA--GGPLLIVAGAGSGKTRVLTHRIAYLMATGRARPHEILAITF 79 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T + + ++ G+ + Sbjct: 80 TNK-------------------AAAEMRERAAELIGE------------------DQAKK 102 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 + + T H+ C I+++ + S+F+I D S +LI KS + +D K Sbjct: 103 MWISTFHSSCVRILRREAATIGMKSNFSIYDSTDSLRLITLVAKS----LEIDPKRFTPK 158 Query: 191 AFYEILEISNDEDIET 206 A + +E I+ Sbjct: 159 AIAHKISSLKNELIDD 174 >gi|194098703|ref|YP_002001765.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae NCCP11945] gi|239999007|ref|ZP_04718931.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae 35/02] gi|240080641|ref|ZP_04725184.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae FA19] gi|240123598|ref|ZP_04736554.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae PID332] gi|193933993|gb|ACF29817.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae NCCP11945] gi|317164300|gb|ADV07841.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae TCDC-NG08107] Length = 671 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 ++QL A +V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNAQQLEAVRYLGGPLFVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 64 MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 87 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|330890183|gb|EGH22844.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. mori str. 301020] Length = 669 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 65 KERVGTLLRGGEGR-------------------------------------GLTVSTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123 >gi|33594191|ref|NP_881835.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I] gi|33564266|emb|CAE43558.1| ATP-dependent DNA helicase [Bordetella pertussis Tohama I] Length = 689 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 ++ ++ E +L D V A AGSGKT ++ Q++ LL ++ LT T A Sbjct: 11 GLNPSQKEAVLYLD--GPCLVLAGAGSGKTRVITQKMAYLLRECGYMGRNIVALTFTNKA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM+ RV ++ D L+ GL + Sbjct: 69 AREMAERVKTLV-------DPKLAK------------------------------GLTIS 91 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA ++++ A + F+I D + + +I+E +T Sbjct: 92 TFHALGVRLLREEAAHAGLKPQFSILDADDAMSIIQELLATT 133 >gi|221134829|ref|ZP_03561132.1| exodeoxyribonuclease V, beta subunit [Glaciecola sp. HTCC2999] Length = 1222 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 82/196 (41%), Gaps = 20/196 (10%) Query: 35 WVSANAGSGKTHILVQRVLR-LLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT + + ++ LL+ + LL +T TKAA E+ R+ + + + Sbjct: 23 LIEASAGTGKTFNITRIAVKVLLVKQISITQLLIVTFTKAATQELKARIAATLQEFLTML 82 Query: 94 DEILSAEITKIQGKKPNKSDM--SKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEA 151 D+ ++ + + + KAR +L + + TI++FC ++ Q Sbjct: 83 DQPQEQWDPLLRDLIIDNAVVTPDKARLILRQAILEMDEAAIFTINSFCGRMLTQSSFLT 142 Query: 152 NITSHFAIADEE---------QSKKLIEE--AKKSTLASIMLDNNEELKKAFYEIL---- 196 + I D+ ++ A + L++ ++ E+ ++ +L Sbjct: 143 HRPFEQTIIDDSQSIYITAIHDQFLALQNKVAYREALSAFGVETPEDFFATYHNVLLNNL 202 Query: 197 --EISNDEDIETLISD 210 E N+ +I+ LI Sbjct: 203 PVEYPNETNIDELIQQ 218 >gi|330447240|ref|ZP_08310890.1| ATP-dependent DNA helicase Rep [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491431|dbj|GAA05387.1| ATP-dependent DNA helicase Rep [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 672 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 38/163 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + + LT T AA Sbjct: 1 MKLNPRQTEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQKCDYKARNIAALTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + + GL V T Sbjct: 61 REMKERVGQTLGR-------------------------------------QEAKGLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 H I+++ + + F++ D++ L++E + L Sbjct: 84 FHTLGLNIIRREYKHLGLKASFSLFDDQDQMALLKELTEDELE 126 >gi|66043346|ref|YP_233187.1| ATP-dependent DNA helicase RepA [Pseudomonas syringae pv. syringae B728a] gi|63254053|gb|AAY35149.1| ATP-dependent DNA helicase RepA [Pseudomonas syringae pv. syringae B728a] gi|330970406|gb|EGH70472.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. aceris str. M302273PT] Length = 669 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 65 KERVGTLLRGGEGR-------------------------------------GLTVSTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123 >gi|251793588|ref|YP_003008317.1| ATP-dependent DNA helicase Rep [Aggregatibacter aphrophilus NJ8700] gi|247534984|gb|ACS98230.1| ATP-dependent DNA helicase Rep [Aggregatibacter aphrophilus NJ8700] Length = 671 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVSGPCLVLAGAGSGKTRVIINKIAHLIGKCGYLPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E+ GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------ESSKGLIVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ ++ + DE L++E L ++ + L+ I Sbjct: 84 FHTLGFDIIKREYKHLGFKANMTLFDEHDQMALLKELTADLLQ----EDKDLLRTLINRI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|154497927|ref|ZP_02036305.1| hypothetical protein BACCAP_01905 [Bacteroides capillosus ATCC 29799] gi|150272917|gb|EDN00074.1| hypothetical protein BACCAP_01905 [Bacteroides capillosus ATCC 29799] Length = 717 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 42/167 (25%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 +E ++ ++ + E + +++ V A AGSGKT L R L+ P +LC+ Sbjct: 1 MTELLEGLNAAQREAVTSTE--GFVRVIAGAGSGKTRALTHRFAYLVNELGILPGNILCV 58 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T +A EM R+ ++ Sbjct: 59 TFTNKSANEMRQRIHQLTGDNDTGY----------------------------------- 83 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + T H FC +++Q+ F + D +++ + Sbjct: 84 ----INTFHGFCVSVLQEDSHAVQYPKSFLVLDNSDIDAMLQIIYEE 126 >gi|225016991|ref|ZP_03706183.1| hypothetical protein CLOSTMETH_00912 [Clostridium methylpentosum DSM 5476] gi|224950257|gb|EEG31466.1| hypothetical protein CLOSTMETH_00912 [Clostridium methylpentosum DSM 5476] Length = 1075 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 58/166 (34%), Gaps = 47/166 (28%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLT 69 S +D +++ ++ + R+ V A G+GKT LV R+ L+ P+ + +T Sbjct: 460 SGPLDSLNE--EQRCAVTAEERAVAVIAGPGTGKTKTLVSRIAYLVEHKGIDPAEITAVT 517 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ + Sbjct: 518 FTNKAAGEMRQRLQAELG--------------------------------------NRAA 539 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 L + T H+ C ++ + E +ADEE++ L +E + Sbjct: 540 KLTIGTFHSICLNLLTESGDEV------RLADEEETLALAQEVLQQ 579 >gi|77165469|ref|YP_343994.1| UvrD/REP helicase [Nitrosococcus oceani ATCC 19707] gi|254433769|ref|ZP_05047277.1| UvrD/REP helicase subfamily [Nitrosococcus oceani AFC27] gi|76883783|gb|ABA58464.1| ATP-dependent DNA helicase Rep [Nitrosococcus oceani ATCC 19707] gi|207090102|gb|EDZ67373.1| UvrD/REP helicase subfamily [Nitrosococcus oceani AFC27] Length = 668 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 38/170 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 + + ++L V A AGSGKT ++ +++ L+ + +++ +T T A Sbjct: 1 MPNLNPQQRLAVRHIDGPLLVLAGAGSGKTRVITHKIVYLIEQCHLSARSIVAVTFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ +++T GL V Sbjct: 61 AREMKSRIGQLLTKGESR-------------------------------------GLVVS 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 T HA I+++ + + F++ D + S+ LI + + +S ++ Sbjct: 84 TFHALGLNILRREHEILRLKAGFSLLDAQDSRALICDLHQQEFSSGGEES 133 >gi|313668563|ref|YP_004048847.1| ATP-dependent DNA helicase [Neisseria lactamica ST-640] gi|313006025|emb|CBN87484.1| ATP-dependent DNA helicase [Neisseria lactamica 020-06] Length = 671 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 64 MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 A I+++ +F+I D S K+I E Sbjct: 87 ALGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|311898256|dbj|BAJ30664.1| putative ATP-dependent DNA helicase [Kitasatospora setae KM-6054] Length = 1073 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 72/212 (33%), Gaps = 45/212 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAA 74 I + P + A AGSGKT ++ RV+ L+ + A P +L LT T A Sbjct: 18 GIPFNDEQVAAIGAPMAPGVIVAGAGSGKTTVMAARVVWLVGSGAVRPEQVLGLTFTNKA 77 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E++ RV + +++ + G ++ Sbjct: 78 AGELAERVRAALLRAGVRAEDE-----------------------------DALGDPQIS 108 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK-------------STLASIM 181 T HAF ++++ L I + + +L + S L + + Sbjct: 109 TYHAFAGTLLKEHGLRLGIEPDVRLLADATRFQLAARVLRQARGPFPALTGTFSALVAEL 168 Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDIIS 213 + + EL + E + E E L+ + Sbjct: 169 VALDSELAEHLVEPARLR--EHDEELLDQLAG 198 >gi|111023339|ref|YP_706311.1| ATP-dependent DNA helicase [Rhodococcus jostii RHA1] gi|110822869|gb|ABG98153.1| probable ATP-dependent DNA helicase [Rhodococcus jostii RHA1] Length = 1115 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 25/227 (11%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77 T + + + P V A AG+GKT + RV+ L+ P +L LT T+ AA + Sbjct: 19 PTPEQAAVIAAPLGPTLVVAGAGAGKTETMAARVVWLVANGVVDPEAVLGLTFTRKAAQQ 78 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 ++ R+ + + + ++ + S ++R L G +V T H Sbjct: 79 LTARIRKRLARLAGSD-----------LLRRVDPSGDLRSRIL-------AGEPEVSTYH 120 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 ++ ++ + L I + E + +L S + D N + E + Sbjct: 121 SYAGRLLSEHGLLLPIEPSATLLSETELWQLAHRVVSSWDGDLDTDRNPA---SVTEAVL 177 Query: 198 ISNDEDIETLI--SDIISNRTAL-KLIFFFFSYLWRRKIIEKSLWSI 241 + + E L+ D+ T L KL+ + +R K L I Sbjct: 178 ALSGQLAEHLVEPDDLREAHTELDKLVHTLPAGPRQRGGPGKELLDI 224 >gi|113460864|ref|YP_718931.1| ATP-dependent DNA helicase Rep [Haemophilus somnus 129PT] gi|112822907|gb|ABI24996.1| ATP-dependent DNA helicase Rep [Haemophilus somnus 129PT] Length = 670 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNAQQQQAVEYTQGPCLVLAGAGSGKTRVIINKIAYLIEHCGYLPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I K R LL V T Sbjct: 61 REMKDRVAHSIGK--------------------------EKTRGLL-----------VST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I++Q ++ + DE L++E L ++ E L++ I Sbjct: 84 FHTLGFDIIKQEYKHLGFKANMTLFDEYDQMALLKEITADLLK----EDKELLQETVSAI 139 Query: 196 LEISND 201 ND Sbjct: 140 SRWKND 145 >gi|126696548|ref|YP_001091434.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9301] gi|126543591|gb|ABO17833.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9301] Length = 1208 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 8/164 (4%) Query: 35 WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 V A+AG+GK+ L VLR +L P +L L+ TK +E+ ++L Sbjct: 14 LVEASAGTGKSFTLAHIVLRNVLEKKVKPDEILLLSFTKNTCSELRDKILLRFHTLKVYL 73 Query: 94 DEILSAEI-TKIQGKKPNKSDMSKARHLLIT----ILETPGGLKVQTIHAFCEAIMQQFP 148 +I ++ N D +++ +I+ + LKV T HAFC I+ ++ Sbjct: 74 QSHNEVKIDNTLKDWYLNFKDKDESKENIISEIDNFINQFYKLKVITFHAFCNDIIDEYS 133 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 +E +T I + + ++ + L+ N EL A Sbjct: 134 IEIGVTQDPYIENNIDN--FYKDVIDNLWIDDFLNLNHELISAV 175 >gi|114778866|ref|ZP_01453665.1| DNA helicase II [Mariprofundus ferrooxydans PV-1] gi|114550901|gb|EAU53466.1| DNA helicase II [Mariprofundus ferrooxydans PV-1] Length = 699 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 53/161 (32%), Gaps = 40/161 (24%) Query: 17 ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAA 74 ++ QL A + + A AGSGKT ++ R+ L+ P +L +T T A Sbjct: 1 MADLNPAQLAAVEAGDGPQLILAGAGSGKTRTIIHRIGHLISARGVAPHRILAVTFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 AAE+ R+ E+I Sbjct: 61 AAELKSRLSELIGDDGGGVVSG-------------------------------------- 82 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 T HA +++++ F + D + K L++ K Sbjct: 83 TFHAISLRLLRRYAEALAYPRSFQVIDADDQKALVKRILKQ 123 >gi|33603572|ref|NP_891132.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50] gi|33577697|emb|CAE34962.1| ATP-dependent DNA helicase [Bordetella bronchiseptica RB50] Length = 689 Score = 104 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 ++ ++ E +L D V A AGSGKT ++ Q++ LL ++ LT T A Sbjct: 11 GLNPSQKEAVLYLD--GPCLVLAGAGSGKTRVITQKMAYLLRECGYMGRNIVALTFTNKA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM+ RV ++ D L+ GL + Sbjct: 69 AREMAERVKTLV-------DPKLAK------------------------------GLTIS 91 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA ++++ A + F+I D + + +I+E +T Sbjct: 92 TFHALGVRLLREEAAHAGLKPQFSILDADDAMSIIQELLATT 133 >gi|59801156|ref|YP_207868.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae FA 1090] gi|240016517|ref|ZP_04723057.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae FA6140] gi|240112994|ref|ZP_04727484.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae MS11] gi|240118044|ref|ZP_04732106.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae PID1] gi|240125781|ref|ZP_04738667.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-92-679] gi|240128301|ref|ZP_04740962.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-93-1035] gi|293399023|ref|ZP_06643188.1| ATP-dependent DNA helicase Rep [Neisseria gonorrhoeae F62] gi|59718051|gb|AAW89456.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae FA 1090] gi|291610437|gb|EFF39547.1| ATP-dependent DNA helicase Rep [Neisseria gonorrhoeae F62] Length = 671 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 ++QL A +V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNAQQLEAVRYLGGPLFVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 64 MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 87 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|226228582|ref|YP_002762688.1| exodeoxyribonuclease V beta subunit [Gemmatimonas aurantiaca T-27] gi|226091773|dbj|BAH40218.1| exodeoxyribonuclease V beta subunit [Gemmatimonas aurantiaca T-27] Length = 1210 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 62/163 (38%), Gaps = 12/163 (7%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST--------LLCLTHTKAAAAEMSHR 81 P + + A+AG+GKT + V+RLLL +L +T T AA E+ R Sbjct: 16 PPGISLIEASAGTGKTFNIAMSVVRLLLEQDAAGQPIVSGLGGILVVTFTNAATEELVTR 75 Query: 82 VLEIITAWSHLSDEILSAEITKIQG--KKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 V ++ + L A+ ++ A L L V TIH F Sbjct: 76 VRRMLQLAHEVWSGALYAKSNSEIEILRELANGREPWAATRAQEALRALDALAVFTIHGF 135 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 C+ ++ +F LE+ + D+ LIEEA Sbjct: 136 CKRVLDEFALESGAPFSMELLDDP--TPLIEEAMFDWWRRTFY 176 >gi|289677648|ref|ZP_06498538.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. syringae FF5] gi|330901055|gb|EGH32474.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. japonica str. M301072PT] Length = 669 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 65 KERVGTLLRGSEGR-------------------------------------GLTVSTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123 >gi|51893634|ref|YP_076325.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863] gi|51857323|dbj|BAD41481.1| ATP-dependent DNA helicase [Symbiobacterium thermophilum IAM 14863] Length = 671 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 41/159 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 +++ A V A AG+GKT R+ LL P ++C+T T AA EM Sbjct: 12 NPAQRAAALHQDGPLLVIAGAGAGKTRTATHRLACLLARGVPPEAVMCITFTNKAAREMR 71 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R + ++ A + + ++T H+ Sbjct: 72 DRAVALVGADAR--------------------------------------RVMIRTFHSA 93 Query: 140 CEAIMQQF---PLEANITSHFAIADEEQSKKLIEEAKKS 175 +++Q+ E+ T F +AD L++EA Sbjct: 94 AMVLLRQYIGDFPESGRTPSFTVADPTIQLALLKEAIAE 132 >gi|163847396|ref|YP_001635440.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl] gi|222525244|ref|YP_002569715.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl] gi|163668685|gb|ABY35051.1| UvrD/REP helicase [Chloroflexus aurantiacus J-10-fl] gi|222449123|gb|ACM53389.1| UvrD/REP helicase [Chloroflexus sp. Y-400-fl] Length = 644 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 59/169 (34%), Gaps = 43/169 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLT 69 E ++L++ +++ + P V A AGSGKT +L R+ L+ P +L +T Sbjct: 1 MEQLNLLN--PAQRAAVTAPIGPILVKAGAGSGKTRVLTLRIAYLITHYGVAPQQILAVT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R+ + Sbjct: 59 FTNKAAREMRERLSNLPGLRIR-------------------------------------- 80 Query: 130 GLKVQTIHAFCEAIMQQ--FPLEANITSHFAIADEEQSKKLIEEAKKST 176 GL T HA C I+++ TS F+I E+ +L EA Sbjct: 81 GLTSGTFHAICTRILRESIEGRLKGYTSSFSIYAGEEQLQLAAEALAGV 129 >gi|309379709|emb|CBX21698.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 670 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 3 LNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 62 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 63 MQERVAKMLPK-------------------------------------PQTRGLTICTFH 85 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 A I+++ +F+I D S K+I E Sbjct: 86 ALGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 121 >gi|260440441|ref|ZP_05794257.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI2] gi|291043739|ref|ZP_06569455.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI2] gi|291012202|gb|EFE04191.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI2] Length = 671 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +QL A +V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNPQQLEAVRYLGGPLFVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 64 MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 87 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|282858133|ref|ZP_06267328.1| ATP-dependent DNA helicase PcrA [Pyramidobacter piscolens W5455] gi|282584055|gb|EFB89428.1| ATP-dependent DNA helicase PcrA [Pyramidobacter piscolens W5455] Length = 658 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 71/200 (35%), Gaps = 49/200 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLC 67 + + + +++ + E + V A AGSGKT +L ++ L+ N P +L Sbjct: 3 DSEKLLKGLNEAQRE--AVTFTGAPQLVLAGAGSGKTRVLTSKIAWLIAAQNVKPWRVLA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA EMS RV +++ + Sbjct: 61 VTFTNKAAREMSERVEKLLGG--------------------------------------S 82 Query: 128 PGGLKVQTIHAFCEAIM---QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 GG ++ T H++ ++ ++ + F I D S A K + + +D Sbjct: 83 LGGAQICTFHSYGLNLLFRNRELLRDRGYNPSFVIYDRSDSLT----AVKHVMQELNIDT 138 Query: 185 NEELKK-AFYEILEISNDED 203 + A I EI + D Sbjct: 139 EKFAPSWALNRISEIKSSAD 158 >gi|118472301|ref|YP_886308.1| ATP-dependent DNA helicase [Mycobacterium smegmatis str. MC2 155] gi|118173588|gb|ABK74484.1| ATP-dependent DNA helicase [Mycobacterium smegmatis str. MC2 155] Length = 1087 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 27/166 (16%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E S + L T + + + P V A AG+GKT + RV+ L+ A PS +L Sbjct: 9 ELSAALGLFPPTDEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGFATPSQVLG 68 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T+ AA ++ RV + + S + Sbjct: 69 LTFTRKAAGQLLRRVRTRLARLAGAGLAPGSGASDE------------------------ 104 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 V T HAF ++++ L + + E + +L + Sbjct: 105 --SATVSTYHAFAGTLLREHGLLLPVEPDTRLLSETELWQLAYDVV 148 >gi|254493798|ref|ZP_05106969.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae 1291] gi|268594855|ref|ZP_06129022.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae 35/02] gi|268596765|ref|ZP_06130932.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae FA19] gi|268682226|ref|ZP_06149088.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID332] gi|226512838|gb|EEH62183.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae 1291] gi|268548244|gb|EEZ43662.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae 35/02] gi|268550553|gb|EEZ45572.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae FA19] gi|268622510|gb|EEZ54910.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID332] Length = 690 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 ++QL A +V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 23 LNAQQLEAVRYLGGPLFVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 82 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 83 MQERVAKMLPK-------------------------------------PQTRGLTICTFH 105 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 106 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 141 >gi|223042143|ref|ZP_03612314.1| ATP-dependent DNA helicase [Actinobacillus minor 202] gi|223017082|gb|EEF15523.1| ATP-dependent DNA helicase [Actinobacillus minor 202] Length = 672 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 59/186 (31%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNDQQQQAVEYVKGACLVLAGAGSGKTRVIINKIAHLIAHCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL + T Sbjct: 61 REMRERVAHSIGK-------------------------------------EKSKGLTIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S + DE L+ K L + ++ + LK+ I Sbjct: 84 FHTLGFEILKREYKLLGFKSGMTLFDEHDQLALL----KHLLPETVSEDKDLLKQLISTI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|219872059|ref|YP_002476434.1| ATP-dependent DNA helicase [Haemophilus parasuis SH0165] gi|219692263|gb|ACL33486.1| ATP-dependent DNA helicase [Haemophilus parasuis SH0165] Length = 673 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 59/186 (31%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVNGACLVLAGAGSGKTRVIINKIAHLIARCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E+ GL + T Sbjct: 61 REMRERVAHSIGK-------------------------------------ESSRGLTIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S + DE L+ K L + ++ + LK I Sbjct: 84 FHTLGFEILKREHKLLGYKSGMTLFDEHDQLALL----KHLLPENVTEDKDLLKLLVATI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|330976482|gb|EGH76534.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 669 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 65 KERVGTLLRGSEGR-------------------------------------GLTVSTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHTRLGYKPGFSIFDETDVKALMTDIMQ 123 >gi|239908036|ref|YP_002954777.1| UvrD/REP helicase family protein [Desulfovibrio magneticus RS-1] gi|239797902|dbj|BAH76891.1| UvrD/REP helicase family protein [Desulfovibrio magneticus RS-1] Length = 1060 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 69/192 (35%), Gaps = 35/192 (18%) Query: 34 AWVSANAGSGKTHILVQRVLRLLLANAH---------------PSTLLCLTHTKAAAAEM 78 V A+AGSGKTH L R + L+L + +L +T T AAAEM Sbjct: 3 IQVKASAGSGKTHALTGRFIDLVLGASRDLPRACGDASDGAYAVPDILAVTFTNKAAAEM 62 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV+E + + + + AR L ++L L ++TI + Sbjct: 63 RDRVIEALKRLA-------------LDPNPAQPGKRATARRELESLLVHAQRLGIRTIDS 109 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQS--KKLIEEA-----KKSTLASIMLDNNEELKKA 191 + + F LE + F + ++++ L E TLA + L Sbjct: 110 LLYLLARVFALELGLRPDFEPSFDDRAILDDLYERLCAGLPADPTLARQFSEAAGALIDH 169 Query: 192 FYEILEISNDED 203 L + D Sbjct: 170 TKNFLPTVSFRD 181 >gi|282882609|ref|ZP_06291228.1| putative DNA helicase II [Peptoniphilus lacrimalis 315-B] gi|281297584|gb|EFA90061.1| putative DNA helicase II [Peptoniphilus lacrimalis 315-B] Length = 977 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 37/193 (19%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81 +Q ++ ++ + + AG+GKT +L QR + ++ N +L LT T A EM++R Sbjct: 7 QQKASTILDKNISLISGAGTGKTGVLTQRFINIIKAQNGKFDNILALTFTDKATEEMNNR 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + + S+ L + TIH+FC+ Sbjct: 67 IYHELAKTSYDF---------------------------------NIDKLNIMTIHSFCK 93 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 ++ + +I S+F + ++ + L++E+ K L++ NNE+ ++ Sbjct: 94 DLILSYNRYLHINSNFDLDNDFFCQILLKESIKKILSTY---NNEDYLSFLLDLNFSIVP 150 Query: 202 EDIETLISDIISN 214 D+E + D+ + Sbjct: 151 RDVEDIFFDLYNR 163 >gi|291296725|ref|YP_003508123.1| UvrD/REP helicase [Meiothermus ruber DSM 1279] gi|290471684|gb|ADD29103.1| UvrD/REP helicase [Meiothermus ruber DSM 1279] Length = 920 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 22/181 (12%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AG+GKT LV R L L+ + +T T+ AA E+ RV I Sbjct: 5 VASAGTGKTASLVLRYLELIAKGTPLRRIAGVTFTRKAADELRVRVAAAI---------- 54 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 E G+ + +R G + TIH F ++ ++ Sbjct: 55 ---EEVLQTGRHLSFVASGGSRAAFQEAAREIAGATLSTIHGFMAQCLRLAAPLLHLDPD 111 Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRT 216 F++ + +++ + EE + TL + D + + + +DE E L+ + S R+ Sbjct: 112 FSMLGDWEAQAIFEE-EWQTLRYLAQDAHHP-------LFGLVSDELTEPLL-HLFSRRS 162 Query: 217 A 217 Sbjct: 163 Q 163 >gi|84494608|ref|ZP_00993727.1| putative DNA helicase [Janibacter sp. HTCC2649] gi|84384101|gb|EAP99981.1| putative DNA helicase [Janibacter sp. HTCC2649] Length = 1103 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 62/156 (39%), Gaps = 22/156 (14%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAE 77 T + + P R V A AGSGKT + RV+ L+ P +L LT T+ AA E Sbjct: 29 PTPEQTAVIEAPLRPLLVIAGAGSGKTETMAARVVWLVANGFVEPEDVLGLTFTRKAATE 88 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 +S R+ + A++ ++ P + D + + + V T H Sbjct: 89 LSDRIGNRL------------AQLRRVGLWTPQEVDGAPSLG---------AAVSVSTYH 127 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 ++ ++++ L + + E + + EA Sbjct: 128 SYAGRLVREHGLRLGYEADTRLLSEAAAWQTAHEAV 163 >gi|323479631|gb|ADX79070.1| uvrD/REP helicase family protein [Enterococcus faecalis 62] Length = 606 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 47/215 (21%), Positives = 89/215 (41%), Gaps = 46/215 (21%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 ++ T S+Q + S V+A GSGKT +L QR+ R+L +L LT + AA Sbjct: 1 MNLTNSQQEIVDYIDGSLLVTAGPGSGKTRVLTQRIARILELKK--GKVLALTFSNKAAE 58 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E++ RV + ++ +E +KV+TI Sbjct: 59 EITERVKKQLS-------------------------------------VENHERIKVETI 81 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSK-KLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H+FC ++ + + + + ++ K ++++ A + + +ML ++ L K I Sbjct: 82 HSFCLDLVLNRGNQIGLEAGLTVIEDRNDKLEILKRAYFN--SKMMLPEDKILHKELRAI 139 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWR 230 E + L D I N + + IF ++ L + Sbjct: 140 EEHKKNF----LYPDNIENNSEFRDIFETYNNLLK 170 >gi|268599073|ref|ZP_06133240.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae MS11] gi|268603757|ref|ZP_06137924.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID1] gi|268684377|ref|ZP_06151239.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-92-679] gi|268686698|ref|ZP_06153560.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-93-1035] gi|268583204|gb|EEZ47880.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae MS11] gi|268587888|gb|EEZ52564.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae PID1] gi|268624661|gb|EEZ57061.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-92-679] gi|268626982|gb|EEZ59382.1| ATP-dependent DNA helicase [Neisseria gonorrhoeae SK-93-1035] Length = 690 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 ++QL A +V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 23 LNAQQLEAVRYLGGPLFVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAE 82 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 83 MQERVAKMLPK-------------------------------------PQTRGLTICTFH 105 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 106 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 141 >gi|225155825|ref|ZP_03724312.1| ATP-dependent DNA helicase [Opitutaceae bacterium TAV2] gi|224803477|gb|EEG21713.1| ATP-dependent DNA helicase [Opitutaceae bacterium TAV2] Length = 1069 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 67/198 (33%), Gaps = 41/198 (20%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 L ++ AS + A G+GKT L R+ L+ + A P + L +T T+ A Sbjct: 498 LAGLDPDQRAAASIVRGPLLIIAGPGTGKTRTLTHRIAHLIADHDAPPESCLAITFTRRA 557 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ +++ + V Sbjct: 558 AGEMRERLAQLLPDGRG-------------------------------------SRVLVT 580 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK---KSTLASIMLDNNEELKKA 191 T HA I+++ + ++ + +A E ++ L E + + D A Sbjct: 581 TFHALGLTILREQQEKLDLGAPLRVAGEREAFALAREILGISAADARRLFADRAIPPPPA 640 Query: 192 FYEILEISNDEDIETLIS 209 + + + D + LI+ Sbjct: 641 YTQAMRARGLVDFDDLIA 658 >gi|149910342|ref|ZP_01898985.1| putative ATP-dependent DNA helicase Rep [Moritella sp. PE36] gi|149806590|gb|EDM66558.1| putative ATP-dependent DNA helicase Rep [Moritella sp. PE36] Length = 671 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 38/164 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT ++ ++ L+ + + LT T AA Sbjct: 1 MKLNPRQDEAVKYISGPCLVLAGAGSGKTRVITTKIAHLVQNCSYKACNIAALTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + + GL V T Sbjct: 61 REMKERIAKTLGKKEAK-------------------------------------GLMVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 H I+++ I F + D++ L++E + TL Sbjct: 84 FHTLGLNIIRKEYKTLGIKQAFTLFDDQDQLALLKELTQDTLEE 127 >gi|325680777|ref|ZP_08160315.1| putative ATP-dependent nuclease subunit A [Ruminococcus albus 8] gi|324107557|gb|EGC01835.1| putative ATP-dependent nuclease subunit A [Ruminococcus albus 8] Length = 1234 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 33/177 (18%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH---PSTLLCLTHTKA 73 ++ T+ ++ R VSA AGSGKT +L++R++RLL LL +T T Sbjct: 3 VNWTEDQEKAIKSFGRGVTVSAAAGSGKTAVLIERIIRLLTDKEKKIPADKLLAVTFTID 62 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAA+M + L+A K + PN + + + + L+ ++ Sbjct: 63 AAAQMRDK---------------LNAAFEKKLREDPNDTWVLQQQELVQLA-------RI 100 Query: 134 QTIHAFCEAI----MQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 TI +FC + + QF + I + + + + + A + + D+++ Sbjct: 101 STIDSFCFDMVKENLNQFAFTGGL----KILGDAERELVFDTAFEQAAEELCGDDHD 153 >gi|15835512|ref|NP_297271.1| ATP-dependent helicase PcrA [Chlamydia muridarum Nigg] gi|270285695|ref|ZP_06195089.1| ATP-dependent helicase PcrA [Chlamydia muridarum Nigg] gi|270289703|ref|ZP_06196005.1| ATP-dependent helicase PcrA [Chlamydia muridarum Weiss] gi|301337090|ref|ZP_07225292.1| ATP-dependent helicase PcrA [Chlamydia muridarum MopnTet14] gi|7190926|gb|AAF39692.1| ATP-dependent helicase PcrA [Chlamydia muridarum Nigg] Length = 634 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 38/163 (23%) Query: 16 LISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 L S+ + Q+ A + P + V A AG+GKT ++ R+L L+ PS +L +T T Sbjct: 2 LTSELNAAQVTAVTAPLQPVLVLAGAGAGKTRVVSHRILYLIEEAQLDPSQILAITFTNK 61 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA E++ RVL + G V Sbjct: 62 AAKELNERVLTQC------------------------------------NFPDYRGIPMV 85 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ I+++ + S+FAI D+ S+KLI++ + Sbjct: 86 STFHSLGVYILRRSIQLLDRQSNFAIYDQSDSEKLIKQCLRKL 128 >gi|152997652|ref|YP_001342487.1| ATP-dependent DNA helicase Rep [Marinomonas sp. MWYL1] gi|150838576|gb|ABR72552.1| ATP-dependent DNA helicase Rep [Marinomonas sp. MWYL1] Length = 682 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 38/160 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L + + + V A AGSGKT ++ ++ L+ ++++ +T T A Sbjct: 12 LRNLNERQLDAVKQIDGPLLVLAGAGSGKTSVITTKIAYLIQTCGFKANSIIAVTFTNKA 71 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV+ +++ GL + Sbjct: 72 AREMKERVVGMLSKQESR-------------------------------------GLSIS 94 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 T H I+++ A + F + D + S LI+E Sbjct: 95 TFHNLGLRILRKEYRRAGLKEGFTLFDSQDSLSLIKEILD 134 >gi|187479679|ref|YP_787704.1| ATP-dependent DNA helicase [Bordetella avium 197N] gi|115424266|emb|CAJ50819.1| ATP-dependent DNA helicase [Bordetella avium 197N] Length = 684 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 ++ + E +L D V A AGSGKT ++ Q++ LL ++ LT T A Sbjct: 10 GLNPAQKEAVLYLD--GPCLVLAGAGSGKTRVITQKIAYLLRECGYMGRNVVALTFTNKA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM+ RV ++ D A+ GL + Sbjct: 68 AREMTERVKPLV--------------------------DRKLAK-----------GLTIS 90 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T HA ++++ + A + F+I D + + +I++ +T Sbjct: 91 TFHALGVRLLREEAVHAGLKPQFSILDADDAMAIIQDLLATT 132 >gi|73666864|ref|YP_302880.1| ATP-dependent DNA helicase Rep [Ehrlichia canis str. Jake] gi|72394005|gb|AAZ68282.1| ATP-dependent DNA helicase, Rep family [Ehrlichia canis str. Jake] Length = 639 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 62/174 (35%), Gaps = 42/174 (24%) Query: 15 DLISQTKSEQLLAS-DPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTK 72 D I+ +Q A + + A AG+GKT + R+ ++ N A P+ +L +T T Sbjct: 3 DYITSLNEDQKEAVININGPILILAGAGTGKTRTVTSRIAYIINNNFALPNQILAVTFTN 62 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM R+ E+ A++ + Sbjct: 63 KAANEMLARINEMTPAYN----------------------------------------IW 82 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 + T HA I++ + + F I + + ++I+ LD ++ Sbjct: 83 LGTFHAIATKILRLHAEIVGLKNDFTIINTDDQLQVIKNIVNDMHPEYGLDAHK 136 >gi|307825819|ref|ZP_07656035.1| exodeoxyribonuclease V, beta subunit [Methylobacter tundripaludum SV96] gi|307733127|gb|EFO03988.1| exodeoxyribonuclease V, beta subunit [Methylobacter tundripaludum SV96] Length = 1185 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 14/130 (10%) Query: 35 WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT+ + VLR ++ LL +T TKAA E+ RV + Sbjct: 19 LIEASAGTGKTYAIAMLVLRFVVEQGIPIEKLLVVTFTKAATEELKDRVRSRLAEARRAL 78 Query: 94 D-----------EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 D E + I K + ++ K R L L + TIH FC+ Sbjct: 79 DSLDRQAQGRHTENIDDNIVDWLAKLDIEPELVKQR--LQMALLDIDQAGIFTIHGFCQR 136 Query: 143 IMQQFPLEAN 152 ++++ LE+ Sbjct: 137 VLREHALESG 146 >gi|300867523|ref|ZP_07112174.1| hypothetical protein OSCI_3400047 [Oscillatoria sp. PCC 6506] gi|300334517|emb|CBN57344.1| hypothetical protein OSCI_3400047 [Oscillatoria sp. PCC 6506] Length = 983 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 64/156 (41%), Gaps = 41/156 (26%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 ++ T +Q + + + A AGSGKT ++ +R+ +++ +++ T T+ A+ Sbjct: 3 LNYTVEQQQAIAHREGNLLIIACAGSGKTEVISKRIAQMVDEGVSKQSIIAFTFTERASR 62 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R+ + + P+ + + G + V TI Sbjct: 63 ELKTRIRGHL------------------EDINPDDASL--------------GDMYVGTI 90 Query: 137 HAFCEAIMQQFPLEANITS---HFAIADEEQSKKLI 169 H+FC ++++ I + +F + D+ + LI Sbjct: 91 HSFCLQLLKE------IDTQYRNFEVMDDVRQAALI 120 >gi|302308651|ref|NP_985640.2| AFR093Wp [Ashbya gossypii ATCC 10895] gi|299790729|gb|AAS53464.2| AFR093Wp [Ashbya gossypii ATCC 10895] Length = 1131 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 38/165 (23%) Query: 14 IDLISQTKSEQLLAS--DPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTH 70 +L + Q A DPT++ + A G+GKT +L R L+ + +P +++ T Sbjct: 3 FELFNGLNQRQYEAVTFDPTKALQIVAGPGTGKTKVLTTRYAYLVAIKKINPLSIIMTTF 62 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 TK AA E+ RV I+ + ++L Sbjct: 63 TKKAADEIKARVEPILQRCGFDTSKLL--------------------------------- 89 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 + T H+ C ++ Q + S + + ++ +I++ Sbjct: 90 --IGTFHSICANLLHQHGELIGLPSSWRVFSPAETDPIIKKLVAD 132 >gi|259481647|tpe|CBF75362.1| TPA: DNA helicase and DNA-dependent ATPase (Eurofung) [Aspergillus nidulans FGSC A4] Length = 997 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 77/220 (35%), Gaps = 45/220 (20%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71 +D ++ + + +S P V A GSGKT L RV LL P ++C T T Sbjct: 7 ILDGLNSAQRTAVTSSAPI--LQVLAPPGSGKTKTLTSRVAYLLAHDGYRPQDVICCTFT 64 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 A+ EM R+ +++ L Sbjct: 65 IKASREMRERLAKLVGD-------------------------------------HVQSRL 87 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C + ++ + F IAD S +I K + + N + Sbjct: 88 ILGTFHSICRRYLVRYGHLIGLQKGFGIADSGDSLAIIRRIVKRL--QLGIQPNTARARI 145 Query: 192 FYEILEISNDEDI---ETLISDIISNRTALKLIFFFFSYL 228 ++ + +D+ + IS ++ +R +++ + S L Sbjct: 146 SHQKAHGVSPDDVAAKQNKISKLLEHREFVQVYREYESEL 185 >gi|123966427|ref|YP_001011508.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9515] gi|123200793|gb|ABM72401.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9515] Length = 1212 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 73/191 (38%), Gaps = 10/191 (5%) Query: 35 WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 V A+AG+GK+ L VLR +L P +L L+ TK +E+ ++L Sbjct: 14 LVEASAGTGKSFTLAHLVLRNVLEKKIKPEEILLLSFTKNTCSELKDKILSRFNKLKSFL 73 Query: 94 DEILSAEITKIQGKKPNKSDMSKAR-----HLLITILETPGGLKVQTIHAFCEAIMQQFP 148 EI + +K + + + LKV T HAFC I++++ Sbjct: 74 QNHDDTEIDDTLLEWYDKYHKEEKYPENIIFEIDNFVNAFYKLKVTTFHAFCNNILEEYS 133 Query: 149 LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE--ILEISNDEDIET 206 ++ I + + + ++ L+ + E+ A + I I + ++ Sbjct: 134 IDIGSPQDPFIENNIDN--VYQDIVNDLWIEEFLNLDPEIISAVSQKKISSIYGSKINKS 191 Query: 207 LISDIISNRTA 217 DI+ N Sbjct: 192 FFVDILKNLDQ 202 >gi|301155111|emb|CBW14574.1| DNA helicase and single-stranded DNA-dependent ATPase [Haemophilus parainfluenzae T3T1] Length = 670 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 60/186 (32%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNSQQQQAVEYVSGPCLVLAGAGSGKTRVIINKIAHLIEHCGYLPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL V T Sbjct: 61 REMKERVAHSIGK-------------------------------------EKSKGLIVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S+ + DE L++E L ++ + L++ I Sbjct: 84 FHTLGFDIIKREYKALGFKSNVTLFDEHDQLALLKELTADVLQ----EDKDLLRELISVI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|330952259|gb|EGH52519.1| ATP-dependent DNA helicase Rep [Pseudomonas syringae Cit 7] Length = 174 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 47/145 (32%), Gaps = 38/145 (26%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 V A AGSGKT ++ +++ L+ ++ +T T AA EM RV ++ Sbjct: 5 GGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREMKERVGTLLRGG 64 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 GL V T H I+++ Sbjct: 65 EGR-------------------------------------GLTVSTFHNLGLNIIRKEHT 87 Query: 150 EANITSHFAIADEEQSKKLIEEAKK 174 F+I DE K L+ + + Sbjct: 88 RLGYKPGFSIFDETDVKALMTDIMQ 112 >gi|152987564|ref|YP_001351386.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PA7] gi|150962722|gb|ABR84747.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PA7] Length = 706 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 42 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAYLVQQCGIRAQYIVAVTFTNKAAREM 101 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 102 KERVGSLLRGGEGR-------------------------------------GLTVSTFHN 124 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 125 LGLNIIRKEHERLGYKPGFSIFDESDIKALLTDIMQ 160 >gi|149187526|ref|ZP_01865823.1| UvrD/REP helicase [Vibrio shilonii AK1] gi|148838406|gb|EDL55346.1| UvrD/REP helicase [Vibrio shilonii AK1] Length = 690 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 57/161 (35%), Gaps = 38/161 (23%) Query: 20 TKSEQLLASD----------PTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 +Q LA D + A AG+GKT+ L + +LL+ P +L +T Sbjct: 7 LNHQQQLAVDFGMPKSGNTSNHSPLLIIAGAGTGKTNTLAHKTAQLLVQGVPPEKILLVT 66 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 + A+AE++ R + + +++ R + Sbjct: 67 FARRASAELASR------------------------ANRIAEQQLNEQRKQYHPVKLD-- 100 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 + T H+ ++++ + S F I D + +++ Sbjct: 101 --WMGTFHSIAARMLREHAALIGLESDFTIMDRNDAADMLD 139 >gi|148239844|ref|YP_001225231.1| exodeoxyribonuclease V beta chain [Synechococcus sp. WH 7803] gi|147848383|emb|CAK23934.1| Exodeoxyribonuclease V beta chain [Synechococcus sp. WH 7803] Length = 1229 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 93/235 (39%), Gaps = 38/235 (16%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAW---- 89 + A+AG+GKT L V+RL++ LL +T T+AAA E+ R+ + + Sbjct: 25 LLEASAGTGKTFALAHLVMRLVVERELKLDALLVVTFTEAAADELRDRIGKRLDGALQGL 84 Query: 90 ----------SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + +D +L + + + + + LE + TIH F Sbjct: 85 LCLEQGGDGEAMATDAVLQEWLAEHGRDPTGRKSKASLLLEALEALERAD---ITTIHGF 141 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF------- 192 C +++ L++ + ++ D+ Q+ L+EE +L + + Sbjct: 142 CRRTLRRQALDSGRSMDLSVDDDPQT--LVEEVAHDLWREQVLTLDPDDVAGLLQSGLRE 199 Query: 193 ----YEILEISNDEDIETLIS-DIISNRTALKLIFFFFSYLWRR-KIIE-KSLWS 240 E+L + D + ++I TAL+ +F +W + ++ LWS Sbjct: 200 DTLTAELLRLDGDCGVRIAEDAEVIDTETALRDVF----PIWLEQRWLQVGELWS 250 >gi|294631280|ref|ZP_06709840.1| UvrD/Rep family helicase [Streptomyces sp. e14] gi|292834613|gb|EFF92962.1| UvrD/Rep family helicase [Streptomyces sp. e14] Length = 988 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 60/184 (32%), Gaps = 31/184 (16%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAA 74 I T + P + A AGSGKT ++ RV+ L+ P +L LT T A Sbjct: 24 GIPFTPEQTACIIAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKA 83 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E++ RV + + +++ + G + Sbjct: 84 AGELAERVRKALIRAGVTDPDVIDPDDPP-------------------------GEPVIS 118 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HAF ++ L + + + +L + L ++F + Sbjct: 119 TYHAFAGRLLTDHGLRIGLEPSTRLLADATRYQLAARVLRE-----APGPYPALTRSFPD 173 Query: 195 ILEI 198 ++ Sbjct: 174 LVSD 177 >gi|257126540|ref|YP_003164654.1| UvrD/REP helicase [Leptotrichia buccalis C-1013-b] gi|257050479|gb|ACV39663.1| UvrD/REP helicase [Leptotrichia buccalis C-1013-b] Length = 1049 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 74/173 (42%), Gaps = 7/173 (4%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 T + + A+AG+GKT+ L + L+ + ++ +T TK A AE+ R+ + + + Sbjct: 3 TNNIILKASAGTGKTYRLSLEFIANLIRGVNYKNIVVMTFTKKATAEIKERIYDFLHQIA 62 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 E + K + + + +++ +++ +++ TI F I + Sbjct: 63 FDEGNGTELEKNLKEIYKFDNLNKKELQNIYFEMIKNKEDIRISTIDGFTNQIFKNA--- 119 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 I +F I + E K +E L I+ N+E+ + F I + ++ Sbjct: 120 --IAPYFNIYNYEILDKETDEFYSKVLIKII--ENKEIFEKFKFIFDEKKEKK 168 >gi|152980889|ref|YP_001355282.1| ATP-dependent DNA helicase Rep [Janthinobacterium sp. Marseille] gi|151280966|gb|ABR89376.1| ATP-dependent DNA helicase Rep [Janthinobacterium sp. Marseille] Length = 686 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 37/155 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT ++ ++ L+ + LT T AA EM Sbjct: 13 NAPQRDAIKYMDGPCLVLAGAGSGKTRVITTKIASLIEEHGYEARNIAALTFTNKAALEM 72 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +++ L V T H+ Sbjct: 73 QERIAKLLKEPKQAK------------------------------------QLTVSTFHS 96 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 I++Q E + F+I D + L+++ Sbjct: 97 LGVKILRQEAKELGLKDRFSIMDSDDCFSLVQDLA 131 >gi|195941303|ref|ZP_03086685.1| DNA helicase (uvrD) [Borrelia burgdorferi 80a] Length = 698 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 50/190 (26%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 T E+++ S V A GSGKT +++ +++ L+ N P+ +L LT T AA E Sbjct: 12 NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKHMNIDPNEILALTFTNKAANE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ R+ +++ L +QT H Sbjct: 72 MNDRINDLLKFDKK---------------------------------------LHIQTFH 92 Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187 +F +++ + + N S+F I D K ++ E K A I+ D Sbjct: 93 SFGSWLLRVYYKDFDKNYDSNFTIWDTNDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 152 Query: 188 LKKAFYEILE 197 + F E E Sbjct: 153 FLEKFIEFTE 162 >gi|296130310|ref|YP_003637560.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109] gi|296022125|gb|ADG75361.1| UvrD/REP helicase [Cellulomonas flavigena DSM 20109] Length = 1162 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 19/176 (10%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 S ++ + T ++ + P R + V A AGSGKT + RV+ L+ P Sbjct: 13 SAVRIAQLVGQHPPTDEQRAVIEAPLRPSLVVAGAGSGKTETMAARVVWLVANGLVAPDQ 72 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L LT T+ AA E+S + +AE ++ + Sbjct: 73 VLGLTFTRKAAGELSE----RVRRRLRGLVRAAAAEGVELPTD--------------AAV 114 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 ++ V T HA+ +++ L + + E +L + +S + Sbjct: 115 VDELARPHVSTYHAYAASLVSDHALRLGVEPGARLLGEAAQWQLASQVVESWAGDL 170 >gi|240142401|ref|YP_002966911.1| putative DNA helicase II [Methylobacterium extorquens AM1] gi|240012345|gb|ACS43570.1| putative DNA helicase II [Methylobacterium extorquens AM1] Length = 707 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 76/213 (35%), Gaps = 45/213 (21%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ A+ + V A AG+GKT L R+ L+ PS+++ T T AA E+ Sbjct: 15 DPEQRAAAAAVSGGHVVIAGAGTGKTRTLTARIAHLVRERGVDPSSIVGTTFTNKAAREI 74 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + L++ T H+ Sbjct: 75 RERVGAVTG--------------------------------------DAAAALRLGTFHS 96 Query: 139 FCEAIMQQFPLEANI-TSHFAIADEEQSKKLIEEAKKS--TLASI-MLDNNEELKKAFYE 194 I+++ A F + + ++ +L++ + + ++ + D + L +E Sbjct: 97 LGARILRRHASAAGFQDRSFVVLPQSEAAELLQRIVEEQRLVRAVPLPDCDPALSDEDWE 156 Query: 195 ILEISNDEDIETLISDIISNRTALKLIFFFFSY 227 L + D D + + R A + I + S+ Sbjct: 157 RLSAAADGDRRRETAAFV--REAARAIARWKSW 187 >gi|169767922|ref|XP_001818432.1| ATP-dependent DNA helicase [Aspergillus oryzae RIB40] gi|83766287|dbj|BAE56430.1| unnamed protein product [Aspergillus oryzae] Length = 998 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 80/220 (36%), Gaps = 45/220 (20%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHT 71 +D ++ +++ S P+ V A GSGKT L RV LL P ++C T T Sbjct: 4 ILDGLN--SAQRAAVSSPSPILQVLAPPGSGKTKTLTARVAYLLAHHGYRPQDVICCTFT 61 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 A+ EM R+ +++ D +++ +L Sbjct: 62 IKASREMRERLAKLVG-------------------------DRVQSKLIL---------- 86 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 T H+ C + + + F IAD S +I K + + N + Sbjct: 87 --GTFHSICRRYLVTYGYLIGLRKGFGIADSGDSLAIIRRIVKRL--QLNIQPNMARGRI 142 Query: 192 FYEILEISNDEDIETLI---SDIISNRTALKLIFFFFSYL 228 Y+ ED+E S ++ +R +++ + S+L Sbjct: 143 SYQKAHGVTPEDLEAKQMKGSKVLEHREFIQVYQAYESHL 182 >gi|289751888|ref|ZP_06511266.1| superfamily protein I DNA and RNA helicase [Mycobacterium tuberculosis T92] gi|289692475|gb|EFD59904.1| superfamily protein I DNA and RNA helicase [Mycobacterium tuberculosis T92] Length = 349 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 28/161 (17%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E + + L T + + + P V A AG+GKT + RV+ L+ A P +L Sbjct: 14 ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLG 73 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T+ AA ++ RV + + + Sbjct: 74 LTFTRKAAGQLLRRVRSRLARLAGIGLGCGDPAACAPV---------------------- 111 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 V T HAF ++++ + L + + E + +L Sbjct: 112 -----VSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 147 >gi|119776398|ref|YP_929138.1| ATP-dependent DNA helicase Rep [Shewanella amazonensis SB2B] gi|119768898|gb|ABM01469.1| ATP-dependent DNA helicase Rep [Shewanella amazonensis SB2B] Length = 670 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 58/164 (35%), Gaps = 38/164 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + ++ + V A AGSGKT +++ ++ L+ + +T T AA Sbjct: 1 MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVQKCGYQARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + +AR GL + T Sbjct: 61 REMKERVAQSMGR--------------------------KEAR-----------GLWIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 H I+++ + + F++ D++ + L++E + L Sbjct: 84 FHTLGLEILKREHKAVGLKAGFSLFDDQDTLALLKELTEKELQE 127 >gi|225552190|ref|ZP_03773130.1| DNA helicase [Borrelia sp. SV1] gi|225371188|gb|EEH00618.1| DNA helicase [Borrelia sp. SV1] Length = 698 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 69/190 (36%), Gaps = 50/190 (26%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 T E+++ + V A GSGKT +++ +++ L+ N P+ +L LT T AA E Sbjct: 12 NTSQEKIVFNKSKNPMLVLAGPGSGKTRVIIAKIVHLIKHMNIDPNEILALTFTNKAANE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ R+ +++ L +QT H Sbjct: 72 MNDRINDLLKFDKK---------------------------------------LHIQTFH 92 Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187 +F +++ + N S+F I D K I+ E K A I+ D Sbjct: 93 SFGSWLLRVYYKDFNKNYDSNFTIWDTNDVVKFIKQIDLAPNLEMAKHIAALILKDKENF 152 Query: 188 LKKAFYEILE 197 + F E E Sbjct: 153 FLEKFIEFTE 162 >gi|224533218|ref|ZP_03673818.1| DNA helicase [Borrelia burgdorferi WI91-23] gi|224511945|gb|EEF82346.1| DNA helicase [Borrelia burgdorferi WI91-23] Length = 698 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 50/190 (26%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 T E+++ S V A GSGKT +++ +++ L+ N P+ +L LT T AA E Sbjct: 12 NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKHMNIDPNEILALTFTNKAANE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ R+ +++ L +QT H Sbjct: 72 MNDRINDLLKFDKK---------------------------------------LHIQTFH 92 Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187 +F +++ + + N S+F I D K ++ E K A I+ D Sbjct: 93 SFGSWLLRVYYKDFDKNYDSNFTIWDTNDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 152 Query: 188 LKKAFYEILE 197 + F E E Sbjct: 153 FLEKFIEFTE 162 >gi|156036288|ref|XP_001586255.1| hypothetical protein SS1G_12833 [Sclerotinia sclerotiorum 1980] gi|154698238|gb|EDN97976.1| hypothetical protein SS1G_12833 [Sclerotinia sclerotiorum 1980 UF-70] Length = 999 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 52/160 (32%), Gaps = 37/160 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 LI S++ S + + A GSGKTH L R LL P ++ T T AA Sbjct: 7 LIGLNASQRAAVSSQADTLAILAGPGSGKTHTLTSRTAWLLHQGLQPWNIIVATFTVKAA 66 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ ++I T L + T Sbjct: 67 REMKERIGKLIGNG-------------------------------------TESKLILGT 89 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 H+ + ++ I F IAD S +I+ K Sbjct: 90 FHSIARRYLARYGHLIGIRKDFGIADSSDSLAIIKRIVKR 129 >gi|226951946|ref|ZP_03822410.1| ATP-dependent DNA helicase (PcrA) [Acinetobacter sp. ATCC 27244] gi|294649208|ref|ZP_06726646.1| ATP-dependent DNA helicase (PcrA) [Acinetobacter haemolyticus ATCC 19194] gi|226837284|gb|EEH69667.1| ATP-dependent DNA helicase (PcrA) [Acinetobacter sp. ATCC 27244] gi|292824875|gb|EFF83640.1| ATP-dependent DNA helicase (PcrA) [Acinetobacter haemolyticus ATCC 19194] Length = 659 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 41/163 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 ++ ID ++ ++L A+ ++ V A AG GKT +V R L+ + LT Sbjct: 4 AKLIDELN--PQQRLAATTVAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPAQQIQILTF 61 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T+ AA+E+ RV + + A + G Sbjct: 62 TRRAASEIVTRVEQHMGAQAK--------------------------------------G 83 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 L+ T H FC ++++ P +T F+I D + + + Sbjct: 84 LRASTFHTFCMYLLRRNPRAFGLT-QFSIIDRDDQLLMFRLLR 125 >gi|322698728|gb|EFY90496.1| putative ATP-dependent DNA helicase [Metarhizium acridum CQMa 102] Length = 989 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 40/170 (23%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66 Q+ ++ +++ + + ++ PT + A GSGKTH L RV+ L+ P+ ++ Sbjct: 4 QQPETILNSLNEAQRRAVTSNSPT--VAILAGPGSGKTHTLTSRVVWLVQHVGYQPADVI 61 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 T T AA EM R+ + + E Sbjct: 62 VATFTVKAAREMKGRIGKRLGE-------------------------------------E 84 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T H+ + + + F IAD+ S+ +I+ K Sbjct: 85 CEKKIVLGTFHSIARRYLAVYGKRIGLDPKFGIADDGDSRAIIQRIIKRL 134 >gi|297521789|ref|ZP_06940175.1| ATP-dependent DNA helicase Rep [Escherichia coli OP50] Length = 655 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 65/186 (34%), Gaps = 43/186 (23%) Query: 35 WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 V A AGSGKT ++ ++ L+ + +T T AA EM RV + + Sbjct: 1 MVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR----- 55 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153 +AR GL + T H I+++ + Sbjct: 56 ---------------------KEAR-----------GLMISTFHTLGLDIIKREYAALGM 83 Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-EDIETLISDII 212 ++F++ D+ L++E + + D+ L++ I ND + + I Sbjct: 84 KANFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKNDLKTPSQAAASAI 139 Query: 213 SNRTAL 218 R + Sbjct: 140 GERDRI 145 >gi|291302043|ref|YP_003513321.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728] gi|290571263|gb|ADD44228.1| UvrD/REP helicase [Stackebrandtia nassauensis DSM 44728] Length = 1041 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 59/161 (36%), Gaps = 31/161 (19%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 D T+ + P R + A AGSGKT + RV+ L+ A P +L LT T+ Sbjct: 17 DEYPPTEQQATAIEAPLRPQLIVAGAGSGKTGTMASRVVWLIANGYARPEQILGLTFTRK 76 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AAAE++ R+ E + S L + + G V Sbjct: 77 AAAELASRIRERLARLSGLDG-----------------------------VGQLSGEPTV 107 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 T H++ I+ + + + Q+ +L A + Sbjct: 108 STYHSYASGIVSEHGPRIGLEPG-TVLSPAQTWQLAYAAVR 147 >gi|152978852|ref|YP_001344481.1| exodeoxyribonuclease V, beta subunit [Actinobacillus succinogenes 130Z] gi|150840575|gb|ABR74546.1| exodeoxyribonuclease V, beta subunit [Actinobacillus succinogenes 130Z] Length = 1227 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 26/187 (13%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH--------PSTLLCLTHTKAAAAEMSHRVLEI- 85 + A+AG+GKT + LRLLL +L +T T+A+ E+ R+ Sbjct: 18 LIEASAGTGKTFTMASLYLRLLLQAGDNAFSVPLTVEQILVVTFTEASTEELKERIRARI 77 Query: 86 ---------------ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 +T + + +E L E ++ + K D ++A L + Sbjct: 78 HLAKAQFAAYRETQDLTVFLNTDNEFLVKENGQLTDRFLAKLDPNEAFRRLGFAEQNMDL 137 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKK 190 V TIH FC ++ Q+ + + I HF + L+ + + + Sbjct: 138 AAVYTIHGFCRRMLMQYAVNSGI--HFNLELVTDETDLLNRLANDFWREQFYGQSFVVTE 195 Query: 191 AFYEILE 197 + LE Sbjct: 196 FIHRKLE 202 >gi|261866905|ref|YP_003254827.1| ATP-dependent DNA helicase Rep [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412237|gb|ACX81608.1| ATP-dependent DNA helicase Rep [Aggregatibacter actinomycetemcomitans D11S-1] Length = 671 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVSGPCLVLAGAGSGKTRVIINKIAHLIDKCGYFPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + I GL V T Sbjct: 61 REMKERVAQSIGKAQSK-------------------------------------GLIVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I++ + ++ + DE L++E L ++ L++ I Sbjct: 84 FHTLGFDIIKCEYKQLGFKANMTLFDEHDQMALLKELTADVLQ----EDKGVLRELINRI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|254369409|ref|ZP_04985421.1| UvrD/REP superfamily I DNA and RNA helicases [Francisella tularensis subsp. holarctica FSC022] gi|157122359|gb|EDO66499.1| UvrD/REP superfamily I DNA and RNA helicases [Francisella tularensis subsp. holarctica FSC022] Length = 671 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 38/146 (26%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89 V A AGSGKT ++++++ L+ +P ++L +T T AA EM RV + Sbjct: 17 ATPLLVLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERVKSRL--- 73 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 D K++ GL + T H+F +I+++ Sbjct: 74 -----------------------DKEKSK-----------GLMISTFHSFGLSILKKHFN 99 Query: 150 EANITSHFAIADEEQSKKLIEEAKKS 175 E +F + D S LI + Sbjct: 100 ELGYKKNFTLFDSHDSLALIYDIAYD 125 >gi|321310205|ref|YP_004192534.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str. Langford 1] gi|319802049|emb|CBY92695.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str. Langford 1] Length = 693 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 86/206 (41%), Gaps = 19/206 (9%) Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 DL + + ++L P + V A AG+GKT +L +R L+ N P +L +T TK Sbjct: 10 DLSNLNEQQRLAVLSPLKPILVVAGAGTGKTTVLTKRFEYLVRDCNIDPRNILVITFTKK 69 Query: 74 AAAEMSHRVLEIITAWSHLSDEI-----LSAEITKIQGKKPNKSDMSKARHLLITILETP 128 AA EM R+ ++ ++ I + I + G+ + +A++ + I+ Sbjct: 70 AATEMKRRIEKLFPDFNFKDSYISTFHKFAKTILEKSGQDFSICFPKRAQYYIRHIISEE 129 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEE------QSKKLIEEAKKSTLASIML 182 L ++ H I+++ I E+ + +L EE L L Sbjct: 130 LKLPIKAFHR-TAEIVRKLKWA---KQGKKITKEDLIEVVSEMARLSEE---EILNKFPL 182 Query: 183 DNNEELKKAFYEILEISNDEDIETLI 208 + + + ++ +L+ N D + ++ Sbjct: 183 EWIQNILDSYENLLKGRNQLDFDDIL 208 >gi|312147859|gb|ADQ30518.1| DNA helicase [Borrelia burgdorferi JD1] Length = 698 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 71/190 (37%), Gaps = 50/190 (26%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T E+++ S V A GSGKT +++ +++ L+ N P+ +L LT T AA E Sbjct: 12 NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKYMNIDPNEILALTFTNKAANE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ R+ +++ L +QT H Sbjct: 72 MNDRINDLLKFDKK---------------------------------------LHIQTFH 92 Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187 +F +++ + + N S+F I D + K ++ E K A I+ D Sbjct: 93 SFGSWLLRVYYKDFDKNYDSNFTIWDTDDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 152 Query: 188 LKKAFYEILE 197 + F E E Sbjct: 153 FLEKFIEFTE 162 >gi|192362002|ref|YP_001983850.1| ATP-dependent DNA helicase Rep [Cellvibrio japonicus Ueda107] gi|190688167|gb|ACE85845.1| ATP-dependent DNA helicase Rep [Cellvibrio japonicus Ueda107] Length = 672 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 63/171 (36%), Gaps = 43/171 (25%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAA 75 ++ + E +L D V A AGSGKT ++ +++ L+ P+ + LT T AA Sbjct: 4 LNPRQREAVLYID--GPCLVLAGAGSGKTSVITRKIAYLIEQCDIPARHIAALTFTNKAA 61 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV +++ + GL V T Sbjct: 62 REMKERVGKLVKGSA-------------------------------------ARGLTVST 84 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 H I+++ F+I D E ++ L++E L LDN+ Sbjct: 85 FHNLGLNIIRREHKTLGFKPGFSIFDAEDARALLKELM---LKEGELDNDH 132 >gi|294102626|ref|YP_003554484.1| Exodeoxyribonuclease V [Aminobacterium colombiense DSM 12261] gi|293617606|gb|ADE57760.1| Exodeoxyribonuclease V [Aminobacterium colombiense DSM 12261] Length = 1173 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 23/163 (14%) Query: 16 LISQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKA 73 L +T+ Q A VSA AG+GKT L R + +L+ A + +L LT T+ Sbjct: 14 LKERTQPGQFKAITADAPLVAVSAGAGTGKTWTLAWRFIWILVTGRADTNEILTLTFTEK 73 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM+ R+ ++ + ++ + + + Sbjct: 74 AALEMAERIKNLLLQLAM---------------------ELPSQKVFFQKAADRIDEGYI 112 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 TIH+F ++++ L + Q +EA+++ Sbjct: 113 STIHSFSMRVLKECGLATELDPESGTIAPPQESLFWKEAEEAL 155 >gi|50554103|ref|XP_504460.1| YALI0E27269p [Yarrowia lipolytica] gi|49650329|emb|CAG80061.1| YALI0E27269p [Yarrowia lipolytica] Length = 820 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 36/160 (22%) Query: 18 SQTKSEQLLASDPTRSAW-VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + ++ AS + + A G+GKT LV RV LL ++ T T AA Sbjct: 8 NLNAAQYRAASFRKDAVLQIVAGPGTGKTKTLVSRVAHLLEQGVPARGIVVTTFTNKAAD 67 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R+ ++ +K T Sbjct: 68 ELKERLGALLADSKT-----------------------------------NFSLVKAGTF 92 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ C ++Q+ + + F +AD+ Q ++ +K Sbjct: 93 HSICYKLLQKHGDKVGLRPKFGVADDAQQVAHLKRVQKQL 132 >gi|87302917|ref|ZP_01085721.1| putative ATP-dependent DNA helicase (PcrA) [Synechococcus sp. WH 5701] gi|87282413|gb|EAQ74372.1| putative ATP-dependent DNA helicase (PcrA) [Synechococcus sp. WH 5701] Length = 641 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 50/151 (33%), Gaps = 43/151 (28%) Query: 20 TKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEM 78 EQL A T V A AG+GKT +V R+ LL P +L +T T+ AAAE+ Sbjct: 8 LNPEQLAAVTSTAPHLVVVAGAGTGKTKTMVARICHLLENGTPPERILAITFTRKAAAEL 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + + T H+ Sbjct: 68 VSRIA-------------------------------------FYAGSDIGKRVNASTFHS 90 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 +C I+ + + I D E K ++ Sbjct: 91 WCSRIISN-----DADGSYTIIDPEDQKDMM 116 >gi|85710882|ref|ZP_01041943.1| Rep helicase, a single-stranded DNA dependent ATPase [Idiomarina baltica OS145] gi|85695286|gb|EAQ33223.1| Rep helicase, a single-stranded DNA dependent ATPase [Idiomarina baltica OS145] Length = 672 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 38/160 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT ++ +++ L+ N + + +T T AA EM Sbjct: 3 NDRQRQAVHYVQGPLLVLAGAGSGKTRVITEKIAYLIRENIYTARQIAAVTFTNKAAREM 62 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + A GL V T H Sbjct: 63 RERVNQTMGAGG-------------------------------------ARGLTVSTFHT 85 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 I+++ + F++ D++ + L+ + Sbjct: 86 LGLNIIRRELSALGLKPGFSLFDDQDTYALLNGLTEDAWE 125 >gi|51598602|ref|YP_072790.1| DNA helicase [Borrelia garinii PBi] gi|51573173|gb|AAU07198.1| DNA helicase [Borrelia garinii PBi] Length = 698 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 50/187 (26%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80 E+++ S V A GSGKT +++ +++ L+ N +P+ +L LT T AA EM+ Sbjct: 15 QEKIVFSKSKNPILVLAGPGSGKTRVIIAKIVYLIKNMNINPNEILALTFTNKAANEMND 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ L +QT H+F Sbjct: 75 RINDLLKFDKK---------------------------------------LHIQTFHSFG 95 Query: 141 EAIMQQFP--LEANITSHFAIADEEQSKKLIEEA--------KKSTLASIMLDNNEELKK 190 +++ + + N S+F I D K ++E K A I+ D + Sbjct: 96 SWLLRAYYNDFDRNYDSNFTIWDTNDVVKFVKEINLAPNFEMAKHIAALILKDKEHFFLE 155 Query: 191 AFYEILE 197 F + E Sbjct: 156 KFIKFTE 162 >gi|78779497|ref|YP_397609.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Prochlorococcus marinus str. MIT 9312] gi|78712996|gb|ABB50173.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Prochlorococcus marinus str. MIT 9312] Length = 1208 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 14/167 (8%) Query: 35 WVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 V A+AG+GK+ L VLR +L P +L L+ TK +E+ ++ + + L Sbjct: 14 LVEASAGTGKSFTLAHLVLRNVLEKKIKPDEILLLSFTKNTCSELRDKI---LLRFQDLK 70 Query: 94 DEILSAEITKIQGKKPN--------KSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + + +KI + + K + + L+V T H+FC I+ Sbjct: 71 LYLQNHNESKIDNTLKDWYLKFKEKEKSKKKIISEIDNFVNEIYKLQVTTFHSFCNNIIN 130 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 ++ +E +T I + + L ++ + L+ N EL A Sbjct: 131 EYSIEIGVTQDPYIENNIDN--LYKDVIDNLWIDSFLNLNHELISAV 175 >gi|46128055|ref|XP_388581.1| hypothetical protein FG08405.1 [Gibberella zeae PH-1] Length = 1060 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 38/162 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L S ++++ + + + A GSGKTH L RV+ L+ PS ++ T T A Sbjct: 10 LQSLNEAQRRAVTSTASTVAILAGPGSGKTHTLTSRVVWLIQRVGYRPSDVIVATFTVKA 69 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ + + E + + Sbjct: 70 AREMKERIGKTLGE-------------------------------------ECEKKIVLG 92 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ + + + S F IAD+ S+ +I+ K Sbjct: 93 TFHSIARRYLSIYGNRIGLDSKFGIADDGDSRAIIQRICKRL 134 >gi|294668891|ref|ZP_06733981.1| exodeoxyribonuclease V, beta subunit [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309188|gb|EFE50431.1| exodeoxyribonuclease V, beta subunit [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 1189 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 6/144 (4%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89 +A + A+AG+GKT+ + RL+L P +L +T TKAA AE+ R+ + Sbjct: 16 QGTALIEASAGTGKTYGIAALFARLILLEKLPVDKVLVVTFTKAATAELKTRLRGRLDEA 75 Query: 90 -----SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 DE + + + + + L L + TIH FC+ ++ Sbjct: 76 FRRIRGDKMDEEADGFMRGLLEQAARQETPERLELRLKAALSQFDNAAIYTIHGFCQRLL 135 Query: 145 QQFPLEANITSHFAIADEEQSKKL 168 + + + AD+ ++L Sbjct: 136 GDYAFLCQVPFETSSADDNDKREL 159 >gi|224532195|ref|ZP_03672827.1| DNA helicase [Borrelia valaisiana VS116] gi|224511660|gb|EEF82066.1| DNA helicase [Borrelia valaisiana VS116] Length = 698 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 42/157 (26%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 T E+++ S V A GSGKT +++ +++ L+ N P+ +L LT T AA E Sbjct: 12 NTSQEKIVFSKSKNPILVLAGPGSGKTRVIIAKIVYLIKHMNIDPNEILALTFTNKAANE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ R+ +++ L +QT H Sbjct: 72 MNARINDLLKFDKK---------------------------------------LHIQTFH 92 Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIEEA 172 +F +++ + + N S+F I D + I++ Sbjct: 93 SFGSWLLRFYYKDFDKNYDSNFTIWDTNDVARFIKQI 129 >gi|330812568|ref|YP_004357030.1| putative ATP-dependent DNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380676|gb|AEA72026.1| putative ATP-dependent DNA helicase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 669 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 51/156 (32%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ A GL V T H Sbjct: 65 KERVGGLLRAGEGR-------------------------------------GLTVCTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHARLGYKPGFSIFDETDVKALMTDIMQ 123 >gi|262193492|ref|YP_003264701.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365] gi|262076839|gb|ACY12808.1| UvrD/REP helicase [Haliangium ochraceum DSM 14365] Length = 1161 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 46/173 (26%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L + ++ A + A G+GKT L R+ L+ P+ L +T T A Sbjct: 496 LSALDPEQRRAAECVHGPLLIVAGPGTGKTRTLTHRIAHLVEDIGVEPAACLAITFTNRA 555 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A E+ R+ ++ G+ V Sbjct: 556 AGELRERLDALLPGAG--------------------------------------AGVAVH 577 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-------KKSTLASI 180 T H+ I+++ + A + F +A E + L+ +A +S LA + Sbjct: 578 TFHSLALRILRENRVRAGLHRGFRVAAESECVALLADALGCLPAKARSVLARL 630 >gi|224372542|ref|YP_002606914.1| ATP-dependent DNA helicase PcrA [Nautilia profundicola AmH] gi|223589142|gb|ACM92878.1| ATP-dependent DNA helicase PcrA [Nautilia profundicola AmH] Length = 665 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 65/188 (34%), Gaps = 38/188 (20%) Query: 14 IDLISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 +D +++ Q A+ + + A AGSGKT + R+ LL PS L LT T Sbjct: 1 MDFLNELNDAQKEAATHIDGALLILAGAGSGKTKTITTRLAYLLSLGIDPSNTLTLTFTN 60 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA+EM R L +I + + Sbjct: 61 KAASEMRERALRMIDNNAAHPPLL------------------------------------ 84 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 T H F ++ + N + F I D + KK+++ S + + K +F Sbjct: 85 -STFHKFGLMFLKLYIHLINRKNTFVIIDSDDQKKILKSISTDLPMSFVSKEISKYKNSF 143 Query: 193 YEILEISN 200 E+ + Sbjct: 144 LNADEVFS 151 >gi|325266415|ref|ZP_08133092.1| exodeoxyribonuclease V beta subunit [Kingella denitrificans ATCC 33394] gi|324981858|gb|EGC17493.1| exodeoxyribonuclease V beta subunit [Kingella denitrificans ATCC 33394] Length = 1237 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 68/177 (38%), Gaps = 20/177 (11%) Query: 35 WVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT + RL LL +L +T TKAA AE+ R+ + + Sbjct: 36 LIEASAGTGKTWNIAALFARLVLLEQMPVDKILVVTFTKAATAELKTRLRARLNDALRVL 95 Query: 94 DEILSAE----------------ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 + + +T++ K + L + + TIH Sbjct: 96 QKYGDGQDIAELCQKYAPDAAAFLTELLQKAMTNESPERLVIRLKAAISQFDHASIYTIH 155 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 FC+ ++Q F + F++ +E+ + A + + + +++ L + Y Sbjct: 156 GFCQRVLQDFAFYCQVP--FSLEMDEEQHRQDYVAAQDYWRATVA-HDDTLAQLVYR 209 >gi|163854653|ref|YP_001628951.1| ATP-dependent DNA helicase [Bordetella petrii DSM 12804] gi|163258381|emb|CAP40680.1| ATP-dependent DNA helicase [Bordetella petrii] Length = 685 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 40/162 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 ++ + E +L D V A AGSGKT ++ Q++ LL ++ LT T A Sbjct: 10 GLNPAQKEAVLYLD--GPCLVLAGAGSGKTRVITQKIAYLLRECGYMGRNVVALTFTNKA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ D A+ GL + Sbjct: 68 AREMDERVKTLV--------------------------DRKLAK-----------GLTIS 90 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ ++++ A + F+I D + + +I+E +T Sbjct: 91 TFHSLGVRMLREEARHAGLKPQFSILDADDAMAIIQELLATT 132 >gi|149194507|ref|ZP_01871603.1| ATP-DEPENDENT HELICASE [Caminibacter mediatlanticus TB-2] gi|149135251|gb|EDM23731.1| ATP-DEPENDENT HELICASE [Caminibacter mediatlanticus TB-2] Length = 673 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 78/205 (38%), Gaps = 14/205 (6%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 + L + A+ P V A+AG+GKT +V R+ LL P +L LT T Sbjct: 1 MPLSKLNNEQFQAATAPFGFNLVIASAGTGKTSTIVGRIAHLLENGLKPEEILLLTFTNK 60 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM RV ++I ++ + K K + + + L I Sbjct: 61 AAIEMKERVSQVIPYAKNIEAGTFHSVSYKWLKKLNKNIVLKQPKDLKILFKSIYDKRD- 119 Query: 134 QTIHAFCEAIM---QQFP--LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 ++ + + ++ S F ++EE + + S ++ E++ Sbjct: 120 ------FNRVLGEEKPYSANYLFDLYSLFINSNEEDFISFLSKKAPSQEEYALI--YEDI 171 Query: 189 KKAFYEILEISNDEDIETLISDIIS 213 + + + N D +L+ ++I+ Sbjct: 172 FDEYERVKKEHNLVDFNSLLLEMIN 196 >gi|293390017|ref|ZP_06634351.1| exodeoxyribonuclease V, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950551|gb|EFE00670.1| exodeoxyribonuclease V, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 1234 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 62/149 (41%), Gaps = 15/149 (10%) Query: 35 WVSANAGSGKTHILVQRVLRLLL---ANAHP-----STLLCLTHTKAAAAEMSHRVLEI- 85 + A+AG+GKT+ + LRLLL N P +L +T T+ A E+ ++ E Sbjct: 29 LIEASAGTGKTYTMGSLYLRLLLQAGENVFPHSLNVEQILVVTFTEMATEELKRKIRERI 88 Query: 86 ------ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 +TA+ D + + ++ +D A L + + TIH F Sbjct: 89 YAAKQKLTAYQQTQDPAVFEQDEFLRQLADTITDFPLAIQRLTLAEQNMDLAAIYTIHGF 148 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKL 168 C ++ Q+ + I + ++ EE L Sbjct: 149 CRRMLMQYAFNSGIHFNLELSGEEDELLL 177 >gi|162448185|ref|YP_001621317.1| DNA helicase II [Acholeplasma laidlawii PG-8A] gi|161986292|gb|ABX81941.1| DNA helicase, UvrD/REP type [Acholeplasma laidlawii PG-8A] Length = 382 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 66/193 (34%), Gaps = 50/193 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 K ++L + R ++ A AGSGKT ++V+R+ RL+L P+ +LC+T T A EM Sbjct: 4 NKEQELAVTSNERCIFLIAGAGSGKTRVIVERIKRLILNGVDPNEILCITFTNKATDEMK 63 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ A T H + Sbjct: 64 ERLKGYDVATH--------------------------------------------TFHGY 79 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C ++ I F +E ++++ A S+ ++ + L Sbjct: 80 CYQVLSSH----KIFQVFEYNNEFSPDEVLKVATYK--NSLKTSKKPKIYDTYEAYLNTR 133 Query: 200 NDEDIETLISDII 212 N D + L+ + Sbjct: 134 NLLDFDDLMIEAF 146 >gi|312602470|ref|YP_004022315.1| exodeoxyribonuclease V subunit beta [Burkholderia rhizoxinica HKI 454] gi|312169784|emb|CBW76796.1| Exodeoxyribonuclease V beta chain (EC 3.1.11.5) [Burkholderia rhizoxinica HKI 454] Length = 1245 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 81/215 (37%), Gaps = 13/215 (6%) Query: 36 VSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSH--- 91 + A+AG+GKT + LRLLL + +L +T TKAA AE+ R+ + Sbjct: 22 IEASAGTGKTWNICALYLRLLLEKDLQADQILVVTFTKAATAELHERIRARLMQLEQALA 81 Query: 92 ----LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 L D ++ I ++ ++ +A + L + TIHAFC+ +Q+ Sbjct: 82 HGVALDDPFVTGLIGRLVDGDAPETATQRALKRIRRALHGFDQAAIHTIHAFCQRALQEA 141 Query: 148 PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETL 207 P A FA+ E L + + + ++ T+ Sbjct: 142 PFAA--AMPFALETEADDTTLRFDVAAQFWRERVEPEAARTPGFAHWLVAHGAGP---TV 196 Query: 208 ISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSIA 242 + +++ R L ++ + ++ ++ Sbjct: 197 LQALLAQRLKKPLAELVWTDPACDETVDTAIDHFG 231 >gi|15600489|ref|NP_253983.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PAO1] gi|107104399|ref|ZP_01368317.1| hypothetical protein PaerPA_01005475 [Pseudomonas aeruginosa PACS2] gi|116053444|ref|YP_793770.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa UCBPP-PA14] gi|218894399|ref|YP_002443269.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa LESB58] gi|254238009|ref|ZP_04931332.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa C3719] gi|254243817|ref|ZP_04937139.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa 2192] gi|296392155|ref|ZP_06881630.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PAb1] gi|9951611|gb|AAG08681.1|AE004942_4 ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa PAO1] gi|115588665|gb|ABJ14680.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa UCBPP-PA14] gi|126169940|gb|EAZ55451.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa C3719] gi|126197195|gb|EAZ61258.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa 2192] gi|218774628|emb|CAW30445.1| ATP-dependent DNA helicase Rep [Pseudomonas aeruginosa LESB58] Length = 669 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAYLVQQCGIRAQYIVAVTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 65 KERVGTLLRGGEGK-------------------------------------GLTVSTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHERLGYKPGFSIFDESDIKALLTDIMQ 123 >gi|56964348|ref|YP_176079.1| ATP-dependent exoDNAse beta subunit [Bacillus clausii KSM-K16] gi|56910591|dbj|BAD65118.1| ATP-dependent exoDNAse beta subunit [Bacillus clausii KSM-K16] Length = 863 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 33/212 (15%), Positives = 75/212 (35%), Gaps = 37/212 (17%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA---------NAHPSTLLC 67 + +++ V+A AGSGKT +L ++++ ++ A + + Sbjct: 1 MQFNSAQKQAIESKQPLVVVAAGAGSGKTRVLTEKIVSIIDEHFHDKGSNYGAPINEIAA 60 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T+ AA EM R+ + G+K + + + + E Sbjct: 61 ITFTEKAAREMKERLASRM-------------------GEKAEAAGNREEKRFWLAQQEE 101 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + T H FC ++ ++ A A+ DE ++ + E + N Sbjct: 102 VETAMIATFHRFCRQLLSRYSRYAEENGELAVLDETEAAMIKAELVEQLCKERQFAN--- 158 Query: 188 LKKAFYEILEISNDEDIETLISDIISNRTALK 219 E+ ++ + L +++ A++ Sbjct: 159 ------ELNQLRGGLSLFALKRSLVAVHDAVR 184 >gi|298526678|ref|ZP_07014087.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A] gi|298496472|gb|EFI31766.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 94_M4241A] Length = 921 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 28/161 (17%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E + + L T + + + P V A AG+GKT + RV+ L+ A P +L Sbjct: 14 ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLG 73 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T+ AA ++ RV + + + Sbjct: 74 LTFTRKAAGQLLRRVRSRLARLAGIGLGCGDPAACAPV---------------------- 111 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 V T HAF ++++ + L + + E + +L Sbjct: 112 -----VSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 147 >gi|312963830|ref|ZP_07778301.1| ATP-dependent DNA helicase RepA [Pseudomonas fluorescens WH6] gi|311281865|gb|EFQ60475.1| ATP-dependent DNA helicase RepA [Pseudomonas fluorescens WH6] Length = 669 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 65 KERVGTLLKGGEGR-------------------------------------GLTVCTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHARLGYKPGFSIFDETDVKALMTDIMQ 123 >gi|308234985|ref|ZP_07665722.1| UvrD/REP helicase [Gardnerella vaginalis ATCC 14018] gi|311115083|ref|YP_003986304.1| UvrD/REP helicase [Gardnerella vaginalis ATCC 14019] gi|310946577|gb|ADP39281.1| UvrD/REP helicase [Gardnerella vaginalis ATCC 14019] Length = 1390 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 85/213 (39%), Gaps = 44/213 (20%) Query: 2 IYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAH 61 + +N+ T + + + ++ + + + A AGSGKT+ + +RV+ L+ + Sbjct: 1 MNNNNVNAVKSTPNSAPSLEQKNVIEAPINQDVLIVAGAGSGKTYTMTRRVIHLIKSKVP 60 Query: 62 PSTLLCLTHTKAAAAEMSHRV-LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 P ++L LT T AAAE+ RV E+ + ++ + L E Sbjct: 61 PESILGLTFTNKAAAELLSRVSAEVSASGANGAKSFLKPE-------------------- 100 Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 V T AF ++I++++ L + + + ++I+ L Sbjct: 101 ------------VMTYDAFFQSIVRRYGLLVGFNQNTMPLSDAGAMEIIKSIIGKYL--- 145 Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIIS 213 DN + K ++ D +TL SD++ Sbjct: 146 --DNPQNHNKNLNKLY------DFDTLCSDVMK 170 >gi|119775036|ref|YP_927776.1| exodeoxyribonuclease V subunit beta [Shewanella amazonensis SB2B] gi|119767536|gb|ABM00107.1| exodeoxyribonuclease V, beta subunit [Shewanella amazonensis SB2B] Length = 1224 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 79/193 (40%), Gaps = 18/193 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLL-----ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 + A+AG+GKT+ + LRLLL +L +T T AA +E+ R+ I Sbjct: 19 LIEASAGTGKTYTIANLYLRLLLGIGQQRPFKVEEILVVTFTNAATSELRDRIRRRIQDG 78 Query: 90 SH--LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147 L + +T++ P++ + L L+T + TIH FC+ ++ Sbjct: 79 FRLCLGEPSEDRFLTQLLHALPDRQLALRQLDL---ALKTLDEAAIYTIHGFCQRVLSDM 135 Query: 148 PLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIE 205 E+ + S F + D E L+ A + + ++ + ++ + +E Sbjct: 136 AFESALLFESEFTLDDSE----LLSMAAADFWRAHCYPLSADIAAMVQ--AKFASPKALE 189 Query: 206 TLISDIISNRTAL 218 + ++ R A+ Sbjct: 190 QELKSLLGARDAV 202 >gi|307128610|ref|YP_003880640.1| putative DNA helicase II [Candidatus Sulcia muelleri CARI] gi|306483072|gb|ADM89942.1| putative DNA helicase II [Candidatus Sulcia muelleri CARI] Length = 701 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 39/154 (25%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTK 72 + ++++T+ + + D R V A AGSGKT +L+ R++ L+ + +L LT TK Sbjct: 1 MLSILNKTQYKAVTTID--RPTMVIAGAGSGKTRVLIYRLIHLIKSGVKSRNILALTFTK 58 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 +A E+ +R+ +I + Sbjct: 59 KSANEIKYRLSSLIDK-------------------------------------NELDKIS 81 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSK 166 + T H+ ++++ ++ I D S+ Sbjct: 82 IGTFHSIFAKLLRKNSYLIGYKKNYIIYDRYDSE 115 >gi|293610237|ref|ZP_06692538.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827469|gb|EFF85833.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 684 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 75/227 (33%), Gaps = 48/227 (21%) Query: 16 LISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 LI++ ++Q A+ ++ V A AG GKT +V R L+ + + LT T+ A Sbjct: 31 LINELNAQQKKAATTSAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPANQIQILTFTRRA 90 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+E+ RV + + A + GL+ Sbjct: 91 ASEIVARVEQHVGAQAK--------------------------------------GLRAS 112 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H FC ++++ P + F+I D + + L DN + Sbjct: 113 TFHTFCMYLLRRNPQAFGLN-QFSIIDRDDQLLMFR-----LLRGKDKDNVLPKAAELCD 166 Query: 195 ILEISNDEDI---ETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 + + + E LI + I +RK L Sbjct: 167 LYSYARNTQTKLSEALIKQLPDAYEHKTQIAELMKTYEQRKRERNFL 213 >gi|240948326|ref|ZP_04752712.1| ATP-dependent DNA helicase [Actinobacillus minor NM305] gi|240297365|gb|EER47906.1| ATP-dependent DNA helicase [Actinobacillus minor NM305] Length = 672 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 59/186 (31%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAA 75 + +Q + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNDQQQQAVEYVKGACLVLAGAGSGKTRVIINKIAHLIAYCGYSPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I E GL + T Sbjct: 61 REMRERVAHSIGK-------------------------------------EKSKGLTIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ S + DE L+ K L + ++ + LK+ I Sbjct: 84 FHTLGFEILKREYKLLGFKSGMTLFDEHDQLALL----KHLLPETVSEDKDLLKQLISAI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|330443998|ref|YP_004376984.1| ATP-dependent helicase PcrA [Chlamydophila pecorum E58] gi|328807108|gb|AEB41281.1| ATP-dependent helicase PcrA [Chlamydophila pecorum E58] Length = 637 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 59/159 (37%), Gaps = 38/159 (23%) Query: 18 SQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 ++ QL A + P R V A AG+GKT +++ R+L L+ P +L +T T AA Sbjct: 5 AELNDAQLSAVTSPLRPVLVLAGAGAGKTRVVIYRILHLIHQGIAPREILAVTFTNKAAK 64 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R++ V T Sbjct: 65 ELKERIMHQCPQA-------------------------------------QYDLPMVCTF 87 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 H+ I+++ N ++F I D+ ++KLI+ + Sbjct: 88 HSLGVFILRRSLHLLNRENNFIIYDQGDAEKLIKRCLQQ 126 >gi|262374135|ref|ZP_06067412.1| ATP-dependent DNA helicase PcrA [Acinetobacter junii SH205] gi|262311146|gb|EEY92233.1| ATP-dependent DNA helicase PcrA [Acinetobacter junii SH205] Length = 659 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 41/163 (25%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTH 70 ++ ID ++ ++ A+ ++ V A AG GKT +V R L+ + LT Sbjct: 4 AKLIDELN--PQQKQAATTVAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPAQQIQILTF 61 Query: 71 TKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGG 130 T+ AA+E+ RV + + A S G Sbjct: 62 TRRAASEIVTRVEQHMGAQSK--------------------------------------G 83 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 L+ T H FC ++++ P +T F+I D + + + Sbjct: 84 LRASTFHTFCMYLLRRNPRAFGLT-QFSIIDRDDQLLMFRLLR 125 >gi|261868104|ref|YP_003256026.1| exodeoxyribonuclease V subunit beta [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413436|gb|ACX82807.1| exodeoxyribonuclease V, beta subunit [Aggregatibacter actinomycetemcomitans D11S-1] Length = 1221 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 15/149 (10%) Query: 35 WVSANAGSGKTHILVQRVLRLLL---ANAHP-----STLLCLTHTKAAAAEMSHRVLEI- 85 + A+AG+GKT+ + LRLLL NA P +L +T T+ A E+ ++ E Sbjct: 16 LIEASAGTGKTYTMGSLYLRLLLQAGENAFPHVLNVEQILVVTFTEMATEELKRKIRERI 75 Query: 86 ------ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 +TA+ D + + ++ + +D A L + + TIH F Sbjct: 76 YDAKQKLTAYQQTQDSAVFEQDEFLRQLADSITDFPLAIQRLTLAEQNMDLAAIYTIHGF 135 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKL 168 C ++ Q+ + I + ++ EE L Sbjct: 136 CRRMLMQYAFNSGIHFNLELSGEEDELLL 164 >gi|308804119|ref|XP_003079372.1| ATP-dependent DNA helicase (ISS) [Ostreococcus tauri] gi|116057827|emb|CAL54030.1| ATP-dependent DNA helicase (ISS) [Ostreococcus tauri] Length = 859 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 41/169 (24%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLC 67 E E + + +++ P + V A GSGKTH+L+ RV L+ P +LC Sbjct: 63 EALEPVHVRGLNDAQRAAVLAPVGATRVLAGPGSGKTHVLIGRVAHLIHEEKTPPREILC 122 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T AA E+ R+ + I E+ + EIT Sbjct: 123 ITFTNKAAKELRERLRDKIG-------EVAAKEITA------------------------ 151 Query: 128 PGGLKVQTIHAFCEAIMQQFPLE---ANITSHFAIADEEQSKKLIEEAK 173 T H+ ++++ T F I D + SK++++ Sbjct: 152 ------GTFHSVAARMLRRHGERIPGIGRTGEFTIYDADDSKQIVQSVL 194 >gi|85859318|ref|YP_461520.1| uvrD/rep helicase [Syntrophus aciditrophicus SB] gi|85722409|gb|ABC77352.1| uvrD/rep helicase [Syntrophus aciditrophicus SB] Length = 657 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 52/158 (32%), Gaps = 39/158 (24%) Query: 13 TIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 ID + EQ + + V A AGSGKT L RV RL+ P +L T T Sbjct: 1 MIDYEKELNEEQCHVVLEAGGPMLVLAGAGSGKTRTLTYRVARLVETGIKPERILLATFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA M +RV E++ L Sbjct: 61 NKAARSMLNRVRELVPV--------------------------------------DLSRL 82 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 T H +++ T F+I D E +++LI Sbjct: 83 SGGTFHHNGHFMLRAHAERLGYTRSFSILDTEDARQLI 120 >gi|159903624|ref|YP_001550968.1| UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9211] gi|159888800|gb|ABX09014.1| possible UvrD/REP helicase subunit B [Prochlorococcus marinus str. MIT 9211] Length = 1265 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 14/155 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEI----ITAW 89 + A+AG+GKT L VLRLL H + +L ++ T+A+AAE+ R+ + Sbjct: 20 LIEASAGTGKTFSLAHLVLRLLTEKQHSINEILVVSFTRASAAEIKARITNRLIFALKGL 79 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHL-----LITILETPGGLKVQTIHAFCEAIM 144 + S E + I ++ + K R + L+ L + TIH FC + Sbjct: 80 ENPSKEYKNKHIDQVLDEWLKKFINDIQRRMHWVNHLLDALTNIDQADITTIHGFCRRTL 139 Query: 145 QQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTL 177 Q+ +E+ I H E + KKL+ E Sbjct: 140 QRDVIESGSAIEPHP--IAEGEIKKLVNEIAHEYW 172 >gi|322711061|gb|EFZ02635.1| putative ATP-dependent DNA helicase [Metarhizium anisopliae ARSEF 23] Length = 992 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 39/168 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCL 68 H ETI L S ++++ + + + + A GSGKTH L RV+ L+ P+ ++ Sbjct: 5 HPETI-LNSLNEAQRRAVTSNSPTVAILAGPGSGKTHTLTSRVVWLVQHVGYQPADVIVA 63 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AA EM R+ + + E Sbjct: 64 TFTVKAAREMKGRIGKRLGE-------------------------------------ECE 86 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + + T H+ + + + F IAD+ S+ +I+ K Sbjct: 87 KKIVLGTFHSIARRYLAVYGKRIGLDPKFGIADDGDSRAIIQRIIKRL 134 >gi|310820608|ref|YP_003952966.1| ATP-dependent DNA helicase, uvrd/rep family protein [Stigmatella aurantiaca DW4/3-1] gi|309393680|gb|ADO71139.1| ATP-dependent DNA helicase, UvrD/REP family protein [Stigmatella aurantiaca DW4/3-1] Length = 1213 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 16/184 (8%) Query: 44 KTHILVQRVLRLLLANAH------PSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS--DE 95 KT+ LV VL LL P+ L LT T AAAEM R + A + + Sbjct: 23 KTYSLVTMVLHLLAGAREAAPALRPAKLCMLTFTDKAAAEMRARTRSRLDALAQAEAKEP 82 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 L A + ++ P + R L G + T H+ C ++++ P I Sbjct: 83 ELRASLERLDRPFPAQDAWRAMREEL-------GSATLGTFHSLCGQLLRRAPPGLGIDP 135 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215 F + DE ++ L+++ + + + + + + E+ + + L++ + Sbjct: 136 SFEVLDELEASNLVQDVCERVVLDALEAGDARVSELCQELTFSGSGF-ADGLVASLRQVY 194 Query: 216 TALK 219 L+ Sbjct: 195 AKLR 198 >gi|293391274|ref|ZP_06635608.1| ATP-dependent DNA helicase Rep [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951808|gb|EFE01927.1| ATP-dependent DNA helicase Rep [Aggregatibacter actinomycetemcomitans D7S-1] Length = 671 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 42/186 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + +Q + V A AGSGKT +++ ++ L+ P + +T T AA Sbjct: 1 MKLNPQQQQAVEYVSGPCLVLAGAGSGKTRVIINKIAHLIDKCGYFPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + I GL V T Sbjct: 61 REMKERVAQSIGKAQSK-------------------------------------GLIVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I++ + ++ + DE L++E L ++ L++ I Sbjct: 84 FHTLGFDIIKGEYKQLGFKANMTLFDEHDQMALLKELTADVLQ----EDKGVLRELINRI 139 Query: 196 LEISND 201 ND Sbjct: 140 SNWKND 145 >gi|86158934|ref|YP_465719.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C] gi|85775445|gb|ABC82282.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-C] Length = 1192 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 20/140 (14%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANA-----HPSTLLCLTHTKAAAAEMSHRVLEI 85 VSA AGSGKT LV+ +RLL +A P L +T T+ AA E+ Sbjct: 18 EAPTAVSAGAGSGKTTALVELCVRLLEGSALGSPCEPRELAAITFTEKAAQELEE----- 72 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 + A + + + + +AR L L + V TIH FC +++ Sbjct: 73 ---------RLRGAVAARARAAREADPESPEARAWLER-LHGLDAMAVGTIHGFCGRLLR 122 Query: 146 QFPLEANITSHFAIADEEQS 165 + EA + A+ +E+++ Sbjct: 123 EHAPEAGLDPEAAVLEEDRA 142 >gi|33151764|ref|NP_873117.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP] gi|33147985|gb|AAP95506.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP] Length = 672 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 73/218 (33%), Gaps = 44/218 (20%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + +Q + V A AGSGKT +++ ++ L+ N P + +T T AA Sbjct: 1 MKLNQQQQQAVEYVNGACLVLAGAGSGKTRVIINKIAYLIAHCNYTPKQIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ RV I E GL + T Sbjct: 61 REIRERVAHSIGK-------------------------------------ENSKGLTIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + + DE L+ K L + ++ + LK +I Sbjct: 84 FHTLGFEILKREYKLLGFKAGMTLFDEHDQMALL----KHLLPEKVTEDKDLLKALMSQI 139 Query: 196 LEISND-EDIETLISDIISNRTALKLIFFFFSYLWRRK 232 ND E +I+ S R + F+ Y + K Sbjct: 140 SYWKNDLLSPEMVINHCHSERDRI-FSNFYQLYQNQLK 176 >gi|294495717|ref|YP_003542210.1| UvrD/REP helicase [Methanohalophilus mahii DSM 5219] gi|292666716|gb|ADE36565.1| UvrD/REP helicase [Methanohalophilus mahii DSM 5219] Length = 1018 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 39/149 (26%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I S+ + A GSGKT + ++V+ ++ P +L LT ++ AA Sbjct: 4 IKLNPSQSQAVDYTDGPLLILAGPGSGKTLTITEKVVNIVDEGFSPDRILALTFSEKAAG 63 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R+ I S G+ V T Sbjct: 64 EMEERIENRIGESS---------------------------------------GITVSTF 84 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQS 165 H++C ++++F L A I + +E S Sbjct: 85 HSYCNDLLKEFSLYAGINQGTRLISQEHS 113 >gi|120536959|ref|YP_957017.1| UvrD/REP helicase [Marinobacter aquaeolei VT8] gi|120326793|gb|ABM21102.1| UvrD/REP helicase [Marinobacter aquaeolei VT8] Length = 715 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 40/181 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 +S T+ ++ +A+ + V A AGSGKT LVQRV RL+ N +P +++ +T ++ AA Sbjct: 4 VSLTQQQEKIANHVDGALIVLAGAGSGKTATLVQRVGRLIDQNINPRSIMLVTFSRKAAK 63 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R+ + + V T Sbjct: 64 EIKVRLSKAFGFDGE--------------------------------------DVVVDTF 85 Query: 137 HAFCEAIMQQFPLEANI--TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 H F ++Q+ + + I E + ++ + + K ++ E KK + Sbjct: 86 HGFGFRFLRQYKDMFGLKEDQDWVILTENEQRRFMNDIGKPLADKANVEAKELRKKLKED 145 Query: 195 I 195 Sbjct: 146 F 146 >gi|300313605|ref|YP_003777697.1| ATP-dependent DNA helicase rep [Herbaspirillum seropedicae SmR1] gi|300076390|gb|ADJ65789.1| ATP-dependent DNA helicase rep protein [Herbaspirillum seropedicae SmR1] Length = 690 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 54/155 (34%), Gaps = 37/155 (23%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 K + V A AGSGKT ++ Q++ L+ + LT T AA EM Sbjct: 9 NKPQSEAVHYMAGPCLVLAGAGSGKTRVITQKIAHLIENCGYESRNIAALTFTNKAALEM 68 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ +++ D +A+HL V T H+ Sbjct: 69 QERIAKLLK-------------------------DPKQAKHL-----------TVSTFHS 92 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 I++Q + F+I D + L++E Sbjct: 93 LGVKILRQESQHLGLKDRFSIMDSDDCFSLVQELA 127 >gi|322418722|ref|YP_004197945.1| UvrD/REP helicase [Geobacter sp. M18] gi|320125109|gb|ADW12669.1| UvrD/REP helicase [Geobacter sp. M18] Length = 678 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 38/165 (23%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHT 71 +DL + + V A AGSGKT ++ R+ L+L P +L +T T Sbjct: 1 MLDLSRLNPEQLAAVKHTEGALLVLAGAGSGKTGVITYRIAHLILNKKVPADRVLAVTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 A+ EM RV ++ G+ Sbjct: 61 NKASKEMKERVEHLVGRKESK-------------------------------------GI 83 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 + T H+ ++++ +F+I L+ + + Sbjct: 84 VLSTFHSLGVRVLKRDIERLGYKKNFSIYSTADQVGLVRQIVREV 128 >gi|119953139|ref|YP_945348.1| DNA helicase II [Borrelia turicatae 91E135] gi|119861910|gb|AAX17678.1| DNA helicase II [Borrelia turicatae 91E135] Length = 697 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 42/154 (27%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80 +Q++ D V A GSGKT ++ ++ L+ P +L LT T AA EM+ Sbjct: 15 QKQIVLDDTKNPILVLAGPGSGKTRVITAKIAHLIKEMQLKPEEILALTFTNKAANEMNL 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R L + + L +QT H+F Sbjct: 75 R---------------------------------------LNYLFDFNKALHIQTFHSFG 95 Query: 141 EAIMQQFPLEAN--ITSHFAIADEEQSKKLIEEA 172 +++ + E + S+F I D K +++ Sbjct: 96 AWLLRLYFKEFDKNYDSNFTIWDTNDVVKFVKQI 129 >gi|134096520|ref|YP_001101595.1| Rep helicase, a single-stranded DNA-dependent ATPase [Herminiimonas arsenicoxydans] gi|133740423|emb|CAL63474.1| ATP-dependent DNA helicase Rep [Herminiimonas arsenicoxydans] Length = 684 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 39/157 (24%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 ++ + E + D V A AGSGKT ++ Q++ L+ + LT T A Sbjct: 11 GLNAPQREAIKYMD--GPCLVLAGAGSGKTRVITQKIAHLIEDCGYEARHVAALTFTNKA 68 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ +++ L V Sbjct: 69 ALEMQERIAKLLKEPKQAK------------------------------------QLTVS 92 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 T H+ I++Q E + F+I D + L+++ Sbjct: 93 TFHSLGVKILRQEAKELGLKDRFSIMDSDDCFSLVQD 129 >gi|254483238|ref|ZP_05096470.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium HTCC2148] gi|214036461|gb|EEB77136.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium HTCC2148] Length = 665 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 63/188 (33%), Gaps = 43/188 (22%) Query: 17 ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 +SQ Q A V A AGSGKT ++ +++ L+ S + +T T A Sbjct: 1 MSQLNPRQREAVRYIDGPMLVLAGAGSGKTSVITRKIAYLVETCGIRASRIAAVTFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +++ + GL V Sbjct: 61 AREMKERVGKLLGT-------------------------------------HSTEGLTVS 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H I++ + S F+I D + ++ LI K L + ++ + Sbjct: 84 TFHQLGLKIIRTERKLLGLKSGFSIFDGQDTQTLI----KDLLIQEHGSDGDQASTIQNQ 139 Query: 195 ILEISNDE 202 I ND Sbjct: 140 ISNWKNDR 147 >gi|193214838|ref|YP_001996037.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110] gi|193088315|gb|ACF13590.1| UvrD/REP helicase [Chloroherpeton thalassium ATCC 35110] Length = 700 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 62/160 (38%), Gaps = 39/160 (24%) Query: 18 SQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 S+ S Q A + + V A AG+GKT L RV L+ + S +L LT T+ AA Sbjct: 31 SELNSAQFEAVTTTDGALLVVAGAGTGKTKTLTYRVGYLIESGVPASDILLLTFTRRAAQ 90 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 EM R + I + ++IQG T Sbjct: 91 EMLAR-----------AAAICDSRCSQIQG---------------------------GTF 112 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 HAF +++ + + +F + D+ +++ ++ + + Sbjct: 113 HAFAHKLLRLHASQIGLAENFTVLDQADAEETLDIVRTAL 152 >gi|301165619|emb|CBW25190.1| putative helicase/endonuclease [Bacteriovorax marinus SJ] Length = 1106 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 96/241 (39%), Gaps = 47/241 (19%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-----------------LLANAHPS 63 EQ LA + T +SA AGSGKT +LV+ V+ L L ++ S Sbjct: 5 NDEQKLAIEHTGGVLLSAGAGSGKTFVLVEHVIYLASKFISENKKDDLLEFELSIQSYFS 64 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 ++ +T TK AA E+ R++ + A + + + Sbjct: 65 KIVLMTFTKKAAGEIYERLIHRVEAQIEYVESDI---------------------EYWVV 103 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 + + + TIH FC ++ Q L ++S AI E + E + Sbjct: 104 VKNAIDFMTISTIHGFCYKLIGQ-GLIPGLSSSVAIISESE----YREKISKLYERWFEN 158 Query: 184 NNEEL-KKAFYEILEISNDEDIETLISDIISN--RTALKLIFFFFSYLWRRKIIEKSLWS 240 + EE+ + F +I+ +++++ I +++S S R K + F S+ K +WS Sbjct: 159 HIEEIPSEEFRKIISLNSNQIINSMLSVFGSPEIRLMWKRLDF-DSFDAEVKEAWPKIWS 217 Query: 241 I 241 + Sbjct: 218 L 218 >gi|299771676|ref|YP_003733702.1| putative ATP-dependent DNA helicase [Acinetobacter sp. DR1] gi|298701764|gb|ADI92329.1| putative ATP-dependent DNA helicase [Acinetobacter sp. DR1] Length = 659 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 77/224 (34%), Gaps = 51/224 (22%) Query: 16 LISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 LI++ ++Q A+ ++ V A AG GKT +V R L+ + + LT T+ A Sbjct: 6 LINELNAQQKKAATTSAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPANQIQILTFTRRA 65 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+E+ RV + + A + GL+ Sbjct: 66 ASEIVARVEQHVGAQAK--------------------------------------GLRAS 87 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H FC ++++ P + F+I D + + L DN + Sbjct: 88 TFHTFCMYLLRRNPQAFGLN-QFSIIDRDDQLLMFR-----LLRGKDKDNVLPKAAELCD 141 Query: 195 ILEISNDEDI---ETLIS---DIISNRTALKLIFFFFSYLWRRK 232 + + + E LI D ++ + + + R + Sbjct: 142 LYSYARNTQTKLSEALIKQLPDAYEHKNQIADLMKTYEQRKRER 185 >gi|268315891|ref|YP_003289610.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252] gi|262333425|gb|ACY47222.1| UvrD/REP helicase [Rhodothermus marinus DSM 4252] Length = 1032 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 51/156 (32%), Gaps = 39/156 (25%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L+ +Q A+ V A G+GKT L R+ L+ P+ L +T T+ A Sbjct: 472 LVGLDPEQQAAATYTDGPVLVVAGPGTGKTRTLTYRLAYLIKERGVDPAQCLAVTFTRRA 531 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ ++ E + V Sbjct: 532 ADEMRTRLQALLG--------------------------------------EAAADVTVT 553 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H ++Q + + +A E + + ++E Sbjct: 554 TFHGLGLELLQTYGDRLGLPQPLRVATEAEQRAVLE 589 >gi|238899306|ref|YP_002924989.1| Rep helicase, a single-stranded DNA-dependent ATPase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229467067|gb|ACQ68841.1| Rep helicase, a single-stranded DNA-dependent ATPase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 676 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 62/178 (34%), Gaps = 43/178 (24%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80 ++ T V A AGSGKT +++ ++ L+ + +T T AA EM Sbjct: 9 QQKEAIEFVTGPCLVLAGAGSGKTRVIIHKIAHLIRRCGYLSRQIAAVTFTNKAAREMKE 68 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 RV +I+ GL + T HA Sbjct: 69 RVADILGRKETF-------------------------------------GLIISTFHALG 91 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 I++ + NI F++ D + L++E L L+N++ +A + + Sbjct: 92 LEIIRAEIAQLNIGPTFSLFDAQDQWTLLKE-----LTETCLNNDKTQLEALVKAISH 144 >gi|148259806|ref|YP_001233933.1| UvrD/REP helicase [Acidiphilium cryptum JF-5] gi|146401487|gb|ABQ30014.1| UvrD/REP helicase [Acidiphilium cryptum JF-5] Length = 639 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 73/191 (38%), Gaps = 44/191 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLC 67 E +D +S T+ + + D +A V A G GKT +L R+ R+L + A +L Sbjct: 4 ELQAALDRLSPTQRQAVDWED--GAALVLAGPGVGKTTVLTTRIARILDSTAGKNFRILA 61 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T A EM RV I+ + + Sbjct: 62 LTFTTKAGDEMRERVEAIVPGLAERTV--------------------------------- 88 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIAD-EEQSKKLIEEAKKSTLA--SIMLDN 184 + T H+FC +++Q I F I D +E +L+++A + + + + + Sbjct: 89 -----IGTFHSFCAQVLRQHGSHLAIKPDFGIYDQDEDRAELLKDALEQAASHGAAVTAD 143 Query: 185 NEELKKAFYEI 195 + +A ++ Sbjct: 144 DTRWLRAIDQL 154 >gi|294786537|ref|ZP_06751791.1| UvrD/REP helicase subfamily [Parascardovia denticolens F0305] gi|315226115|ref|ZP_07867903.1| UvrD/REP helicase subfamily [Parascardovia denticolens DSM 10105] gi|294485370|gb|EFG33004.1| UvrD/REP helicase subfamily [Parascardovia denticolens F0305] gi|315120247|gb|EFT83379.1| UvrD/REP helicase subfamily [Parascardovia denticolens DSM 10105] Length = 1674 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 25/166 (15%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 + ++ + P + + A AGSGKT+++ +R+ +L+ P +L LT T+ AA E Sbjct: 11 NEQQEDIIQAPADQDLLIVAGAGSGKTYVMTKRIAKLITDDGVAPHKILGLTFTRKAAGE 70 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 + RV + ++ S + + +S A L T V T Sbjct: 71 LLDRVTKETSSLSP--------------DQSAGRPGLSYAGFLHPT---------VSTYD 107 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 AF ++I++Q+ + A + + +L E +A D Sbjct: 108 AFFQSIVRQYGALVGLDGSAAPLSQAGAYQLASEVVGEHVAQYAQD 153 >gi|321310938|ref|YP_004193267.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str. Langford 1] gi|319802782|emb|CBY93428.1| ATP-dependent DNA helicase UvrD/PcrA [Mycoplasma haemofelis str. Langford 1] Length = 584 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 46/164 (28%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 + + P + V A AG+GKT +L +R++ L+ +N A P +L +T T AA Sbjct: 1 MELNPEQARAVKAPPKPILVIAPAGTGKTRVLTERIIYLIESNIAAPDEILAITFTNLAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV I + D + T Sbjct: 61 NEMVSRVENRIKDKHRIPDA-------------------------------------IGT 83 Query: 136 IHAFCEAIMQQFPLEANI-----TSHFAIADEEQSKKLIEEAKK 174 IH+ I+++ + + +F I + + +A Sbjct: 84 IHSLFGEILRK---DIGLVCRNRNFNFEITYGDFQDSIFRKALN 124 >gi|317404550|gb|EFV84957.1| ATP-dependent DNA helicase [Achromobacter xylosoxidans C54] Length = 687 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 69/192 (35%), Gaps = 54/192 (28%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 ++ + E +L D V A AGSGKT ++ Q++ LL ++ LT T A Sbjct: 10 GLNPAQKEAVLYLD--GPCLVLAGAGSGKTRVITQKIAYLLRECGYMGRNVVALTFTNKA 67 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ R L GL + Sbjct: 68 AREMDERVRTLVD------------------------------RKLGK-------GLTIS 90 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK--------------STLASI 180 T H+ ++++ A + F+I D + + +I+E S + Sbjct: 91 TFHSLGVKLLREEARNAGLKPTFSILDADDAMAIIQELLATTDKGRLRHVQGIISLWKNA 150 Query: 181 MLDNNEELKKAF 192 +++ ++ ++A Sbjct: 151 LMEPDDAAREAI 162 >gi|229593328|ref|YP_002875447.1| ATP-dependent DNA helicase [Pseudomonas fluorescens SBW25] gi|229365194|emb|CAY53470.1| ATP-dependent DNA helicase [Pseudomonas fluorescens SBW25] Length = 669 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQQCGIRAQYIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 65 KERVGTLLKGGEGR-------------------------------------GLTVCTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHARLGYKPGFSIFDETDVKSLMTDIMQ 123 >gi|219559253|ref|ZP_03538329.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T17] Length = 356 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 28/161 (17%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E + + L T + + + P V A AG+GKT + RV+ L+ A P +L Sbjct: 33 ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLG 92 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T+ AA ++ RV + + + Sbjct: 93 LTFTRKAAGQLLRRVRSRLARLAGIGLGCGDPAACAPV---------------------- 130 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 V T HAF ++++ + L + + E + +L Sbjct: 131 -----VSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 166 >gi|224372826|ref|YP_002607198.1| ATP-dependent helicase [Nautilia profundicola AmH] gi|223588787|gb|ACM92523.1| ATP-dependent helicase [Nautilia profundicola AmH] Length = 675 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 44/101 (43%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 K + A+ P V A+AG+GKT +V R+ LL P +L LT T AA EM Sbjct: 7 NKEQLQAATAPLGHNLVIASAGTGKTSTIVGRIAYLLEEGIKPEEILLLTFTNKAAQEMK 66 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 RV ++ + ++ A + K + + + L Sbjct: 67 ERVAGVLPSARNIEAGTFHAVSYRWLKKLNKNIVLKQPKDL 107 >gi|297619071|ref|YP_003707176.1| UvrD/REP helicase [Methanococcus voltae A3] gi|297378048|gb|ADI36203.1| UvrD/REP helicase [Methanococcus voltae A3] Length = 1085 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 40/148 (27%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +S++ + A GSGKT + +++ L+ N P +L LT ++ AA E Sbjct: 12 PNESQKRAIEYTNGPLLILAGPGSGKTFTITNKIISLIENQNLKPEKILALTFSEKAANE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV + I G+ + T H Sbjct: 72 MLTRVEKEIG---------------------------------------LNTGISISTFH 92 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQS 165 +FC ++ +F E S+ + +E + Sbjct: 93 SFCNDLINEFAFEIGRGSNLKLISKEHA 120 >gi|126666630|ref|ZP_01737608.1| ATP-dependent DNA helicase Rep [Marinobacter sp. ELB17] gi|126629018|gb|EAZ99637.1| ATP-dependent DNA helicase Rep [Marinobacter sp. ELB17] Length = 672 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 71/214 (33%), Gaps = 45/214 (21%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAA 75 ++ + E + +D V A AGSGKT ++ +++ L+ P + +T T AA Sbjct: 4 LNPRQREAVRYAD--GPMLVLAGAGSGKTSVITRKIAFLIEQLGIPGRHIAAVTFTNKAA 61 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV II GL V T Sbjct: 62 REMKERVGRIIDRKLTR-------------------------------------GLTVST 84 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ F+I D E +K L+++ L D +EL I Sbjct: 85 FHNLGLNIIREEHDHVGYHPGFSIFDAEDAKALLQDLM---LTHGSTDAGDELNPVQMTI 141 Query: 196 LEISNDED--IETLISDIISNRTALKLIFFFFSY 227 N E L + +I+ +++ Sbjct: 142 SSWKNAMRPPAEALSKAADEREQRIAIIYGYYNE 175 >gi|251792613|ref|YP_003007339.1| exodeoxyribonuclease V subunit beta [Aggregatibacter aphrophilus NJ8700] gi|247534006|gb|ACS97252.1| exodeoxyribonuclease V, beta subunit [Aggregatibacter aphrophilus NJ8700] Length = 1220 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 70/182 (38%), Gaps = 17/182 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A+AG+GKT+ + LRLLL + +L +T T+ A E+ ++ E I Sbjct: 16 LIEASAGTGKTYTMGSLYLRLLLQAGKNAFPYALNVEQILVVTFTEMATEELKKKIRERI 75 Query: 87 TA-------WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 + D + ++G +D+ A L + + TIH F Sbjct: 76 YDAKQKVIVYQQTRDLCAFEQDDFLRGLAETITDLPLAIQRLTLAEQNMDLAAIYTIHGF 135 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 C ++ Q+ + I HF + + +L+ ++ + + + + L Sbjct: 136 CRRMLVQYAFNSGI--HFNLELSGEEDELLLHLAQNVWRTHFYSQPYAVVEFIQQNLTSP 193 Query: 200 ND 201 ++ Sbjct: 194 SN 195 >gi|92113296|ref|YP_573224.1| exodeoxyribonuclease V, beta subunit [Chromohalobacter salexigens DSM 3043] gi|91796386|gb|ABE58525.1| exodeoxyribonuclease V, beta subunit [Chromohalobacter salexigens DSM 3043] Length = 1269 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 58/162 (35%), Gaps = 20/162 (12%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH------------PSTLLCLTHTKAAAAEMSHRV 82 + A+AG+GKT L +RL+L P +L +T T+AA AE+ R+ Sbjct: 27 LIEASAGTGKTFTLAALYVRLVLGPLPGREACDYPRPLLPPEILVVTFTEAATAELRGRI 86 Query: 83 LEIITAWSHLSDEILSAEITKIQGK------KPNKSDMSKARHLLITILETPGGLKVQTI 136 + A + G + ++ ++ A L + TI Sbjct: 87 RARLKEARDWLLAPPEARHDDVLGALLTPLVEAGQTAVASAAKRLDQAARLMDEAAIFTI 146 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 H FC+ ++ + +A + + + L+ + Sbjct: 147 HGFCQRMLTRHAFDAGARFGAELLQDGST--LLTRVVEDYWR 186 >gi|114320846|ref|YP_742529.1| UvrD/REP helicase [Alkalilimnicola ehrlichii MLHE-1] gi|114227240|gb|ABI57039.1| UvrD/REP helicase [Alkalilimnicola ehrlichii MLHE-1] Length = 683 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 64/198 (32%), Gaps = 44/198 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78 + + + + A V A AGSGKT +R R L P S ++ LT T AA EM Sbjct: 3 DQDQARVVAHEDGPAAVLAGAGSGKTRCTTERAARRLTERGLPGSAMVLLTFTNKAAGEM 62 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + L + T H+ Sbjct: 63 RERLAARLPKGVDLP--------------------------------------WIGTFHS 84 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-----KSTLASIMLDNNEELKKAFY 193 F ++++ + + + D E S+++++ T ++ + L A Sbjct: 85 FGSRLLREHGQRIGVPGNATLMDAEDSRRMLDALLAGPFPDRTRRQRAMEAQDALAAAGL 144 Query: 194 EILEISNDEDIETLISDI 211 + E + + + + Sbjct: 145 DPTEPDHLAPMRDALEAM 162 >gi|257075423|ref|ZP_05569784.1| UvrD/REP helicase [Ferroplasma acidarmanus fer1] Length = 924 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 64/158 (40%), Gaps = 44/158 (27%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 I+ T ++ + + V A GSGKT ++ +RV +L+ P ++ +T T+ AA Sbjct: 5 INLTDEQEKAIAHKSGRLRVIACPGSGKTEVIARRVAKLIKDGEKPEGIVAITFTEKAAE 64 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R+ +I+ + P ++D G + TI Sbjct: 65 ELKTRIRKIL------------------DVECPERAD--------------FGDMFTGTI 92 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 H F I+++ + ++ D ++E+A++ Sbjct: 93 HGFALDILRE------LDPYYRTFD------VLEDARR 118 >gi|88608144|ref|YP_506352.1| ATP-dependent DNA helicase UvrD [Neorickettsia sennetsu str. Miyayama] gi|88600313|gb|ABD45781.1| ATP-dependent DNA helicase, UvrD/REP family [Neorickettsia sennetsu str. Miyayama] Length = 907 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 20/188 (10%) Query: 27 ASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEII 86 +DP S W++++AG GKT +LV+R + LL+ +LC+T TK A AEM +R+ I+ Sbjct: 5 VTDPNVSVWINSSAGCGKTTLLVRRAISLLVNKEK--NILCITFTKVATAEMHNRIFAIL 62 Query: 87 TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQ 146 S ++D + + + D R L+ T +++QT+H+FC ++ Sbjct: 63 GKLSAMNDTDMDEYLLSTINRTV--KDRDYVRKLVYTA---DAFIQIQTLHSFCWQSIK- 116 Query: 147 FPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIET 206 + D K I E + ++ E + + E + + + Sbjct: 117 ------------MCDRRHLSKEIYEENQHMFCQLLARFIWERCQLSKKTAEKTTERKLHE 164 Query: 207 LISDIISN 214 ++ ++SN Sbjct: 165 TLASLLSN 172 >gi|154933919|gb|ABS88757.1| StkZ [Myxococcus xanthus] Length = 651 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 36/133 (27%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AGSGKT L RV R+L P+ +L LT T AA EM+ RV E+ A+ + Sbjct: 2 IAGAGSGKTRTLTFRVARMLERGVPPAGILLLTFTNKAAREMTRRVEELAGAFVDV---- 57 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 R +L T H +++Q+ +++ Sbjct: 58 ---------------------RRILG-----------GTFHHAAHVLLRQYAGVLGFSTN 85 Query: 157 FAIADEEQSKKLI 169 F + D E ++ L+ Sbjct: 86 FTVLDREDARDLM 98 >gi|240014083|ref|ZP_04720996.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae DGI18] gi|240121644|ref|ZP_04734606.1| putative ATP-dependent DNA helicase [Neisseria gonorrhoeae PID24-1] Length = 671 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 39/156 (25%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 ++QL A +V A AGSGKT ++ Q++ L++ P T+ +T T AAAE Sbjct: 4 LNAQQLEAVRYLGGPLFVLAGAGSGKTGVITQKMKHLIVNVGYLPHTVAAITFTNKAAAE 63 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 64 MQERVAKMLPK-------------------------------------PQTRGLTICTFH 86 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 + I+++ +F+I D S K+I E Sbjct: 87 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELL 122 >gi|50084109|ref|YP_045619.1| ATP-dependent DNA helicase [Acinetobacter sp. ADP1] gi|49530085|emb|CAG67797.1| ATP-dependent DNA helicase [Acinetobacter sp. ADP1] Length = 679 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 47/187 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78 +Q V A AGSGKT ++ Q++ L+ P + +T T AA EM Sbjct: 8 NDKQQEAMKYTQGPLLVLAGAGSGKTSVITQKIAYLVKQCRIPAHRITAMTFTNKAAREM 67 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++++ E GL V T H Sbjct: 68 KERVAKLLSR-------------------------------------EDAKGLSVSTFHT 90 Query: 139 FCEAIMQQFPLEANITS---HFAIADEEQSKK-LIEEAKKSTLASIMLDNNEELKKAFYE 194 F +++ LE T +F+I D + K+ L++ ++ L+ ++ E + KA + Sbjct: 91 FGLNLLR---LELKHTPLKNNFSILDSDDCKRILMDLMQRDNLS--GAESKELIAKAMKK 145 Query: 195 ILEISND 201 I + ND Sbjct: 146 ISDWKND 152 >gi|329946360|ref|ZP_08293927.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386] gi|328527336|gb|EGF54334.1| UvrD/REP helicase [Actinomyces sp. oral taxon 170 str. F0386] Length = 1146 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 14/159 (8%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLL 66 Q + ++ + + T+ + + + V A AGSGKT + QRV+ L+ P +L Sbjct: 12 QALAASLGIHTPTEEQARVIAHRLSPLLVVAGAGSGKTATMAQRVVYLVATGQVRPDQVL 71 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 LT T+ A AE+ RV +T +A G S Sbjct: 72 GLTFTRKATAELDQRVASRLTGLGAAGMLPATAPDGAETGGDTADST------------- 118 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQS 165 G + T ++F ++++ L + + + +S Sbjct: 119 DVGEPMIATYNSFAGSLVRDHGLRIGVDPDSTLITQARS 157 >gi|257460429|ref|ZP_05625530.1| ATP-dependent DNA helicase PcrA [Campylobacter gracilis RM3268] gi|257441760|gb|EEV16902.1| ATP-dependent DNA helicase PcrA [Campylobacter gracilis RM3268] Length = 686 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 38/161 (23%) Query: 10 HSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLT 69 S+ ++ ++ T+ E AS + + A AGSGKT + R+ LL P L LT Sbjct: 1 MSDILEGLNPTQRE--AASHVDGAMLILAGAGSGKTKTITARLAYLLSNGVPPGNTLTLT 58 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T AA EM R L +I+ + +L Sbjct: 59 FTNKAATEMRSRALNLISGLNLSGVPLLC------------------------------- 87 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 T H F ++ E +++F + D + KK+I+ Sbjct: 88 -----TFHKFGLLFLKFHISELGRSANFQVIDTDDKKKIIK 123 >gi|289805484|ref|ZP_06536113.1| ATP-dependent DNA helicase Rep [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 112 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 49/143 (34%), Gaps = 38/143 (26%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +Q T V A AGSGKT ++ ++ L+ + +T T AA EM R Sbjct: 7 QQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKER 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 V + + +AR GL + T H Sbjct: 67 VGQTLGR--------------------------KEAR-----------GLMISTFHTLGL 89 Query: 142 AIMQQFPLEANITSHFAIADEEQ 164 I+++ + S+F++ D+ Sbjct: 90 DIIKREYAALGMKSNFSLFDDTD 112 >gi|71275278|ref|ZP_00651565.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Dixon] gi|71900136|ref|ZP_00682277.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Ann-1] gi|71164087|gb|EAO13802.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Dixon] gi|71730085|gb|EAO32175.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Ann-1] Length = 658 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 59/177 (33%), Gaps = 38/177 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74 + ++ V A AGSGKT ++V+++ L+ ++ +P + +T T + Sbjct: 1 MHGLNSPQRAAVLYREGPLLVLAGAGSGKTRVIVEKIAYLITSDCYPAKRIAAITFTNKS 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV + I + GL + Sbjct: 61 AKEMRERVAKQIKS-------------------------------------SRADGLTIC 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 T HA +Q + F++ D + + I + ++ D + +A Sbjct: 84 TFHALGLKFLQIEHDAVGLKPGFSVFDADDADAQINDLLHGAKQDVIDDTKRRISRA 140 >gi|113954302|ref|YP_730266.1| exodeoxyribonuclease V subunit beta [Synechococcus sp. CC9311] gi|113881653|gb|ABI46611.1| exodeoxyribonuclease V, beta subunit [Synechococcus sp. CC9311] Length = 1212 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 61/159 (38%), Gaps = 17/159 (10%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT L VLRL+ + LL +T T++AAAE+ R+ + Sbjct: 18 LLEASAGTGKTFALAHLVLRLVTERKLNLKELLVVTFTESAAAELRDRIGRRLNDALQAL 77 Query: 94 DEILSAEITKIQGKKPNKSDMSKARHL--------------LITILETPGGLKVQTIHAF 139 + + P + M + L L+ LE + TIH F Sbjct: 78 LQNQTNNSNSQTDSSPTDAVMEEWLILHGQDPNTRRTIASNLLEALEGLERADITTIHGF 137 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLA 178 C +++ L+ + + E S+ L +E Sbjct: 138 CRRSLRRQALQNG--TAMEVCLENDSQHLSQEVAYDYWE 174 >gi|294669243|ref|ZP_06734323.1| ATP-dependent DNA helicase Rep [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308875|gb|EFE50118.1| ATP-dependent DNA helicase Rep [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 623 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 59/172 (34%), Gaps = 39/172 (22%) Query: 20 TKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 +Q+ A V A AGSGKT ++ Q++ L++ P T+ +T T AA E Sbjct: 3 LNPQQIEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAATE 62 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M RV +++ GL + T H Sbjct: 63 MQERVAKMLPKSQTR-------------------------------------GLTICTFH 85 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + I+++ +F+I D S K+I E T + ++ Sbjct: 86 SLGMKILREEANHIGYKKNFSILDSTDSAKIIGELLGGTGKEALFKAQHQIS 137 >gi|198283952|ref|YP_002220273.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665213|ref|YP_002426586.1| ATP-dependent DNA helicase Rep [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248473|gb|ACH84066.1| UvrD/REP helicase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517426|gb|ACK78012.1| ATP-dependent DNA helicase Rep [Acidithiobacillus ferrooxidans ATCC 23270] Length = 662 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 44/190 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 + +Q + V A AGSGKT ++ ++++ L+ P + +T T A Sbjct: 4 MAELNPPQQEAVTHIHGPLLVLAGAGSGKTRVITRKIVHLIREQQVAPRHICAVTFTNKA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV E + + GL V Sbjct: 64 AREMKSRVGEALQG-------------------------------------HSSRGLMVS 86 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H I+++ +F++ D S ++ + + +L +A Sbjct: 87 TFHHLGLQILRKDIERLGYRGNFSVIDPGDSLGMVRNLLRE------ANGPSDLAEAIQS 140 Query: 195 ILEISNDEDI 204 + ++ I Sbjct: 141 RISRFKNDGI 150 >gi|197121750|ref|YP_002133701.1| UvrD/REP helicase [Anaeromyxobacter sp. K] gi|196171599|gb|ACG72572.1| UvrD/REP helicase [Anaeromyxobacter sp. K] Length = 1195 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 21/140 (15%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANA-----HPSTLLCLTHTKAAAAEMSHRVLEI 85 VSA AGSGKT LV+ +RLL +A P L +T T+ AA E+ Sbjct: 18 EAPTAVSAGAGSGKTTALVELCVRLLEGSALGSPCEPRALAAITFTEKAAEEL------- 70 Query: 86 ITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 +E L A +T + +AR L L + V TIH FC +++ Sbjct: 71 --------EERLRAAVTARARAAREAPESPEARAWLER-LHGLDAMAVGTIHGFCGRLLR 121 Query: 146 QFPLEANITSHFAIADEEQS 165 + EA + A+ DE+++ Sbjct: 122 EHAPEAGLDPEAAVLDEDRA 141 >gi|308232374|ref|ZP_07415860.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu001] gi|308379444|ref|ZP_07486303.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu010] gi|308380606|ref|ZP_07490521.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu011] gi|308214071|gb|EFO73470.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu001] gi|308356886|gb|EFP45737.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu010] gi|308360886|gb|EFP49737.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu011] Length = 1144 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 28/161 (17%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E + + L T + + + P V A AG+GKT + RV+ L+ A P +L Sbjct: 57 ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLG 116 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T+ AA ++ RV + + + Sbjct: 117 LTFTRKAAGQLLRRVRSRLARLAGIGLGCGDPAACAPV---------------------- 154 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 V T HAF ++++ + L + + E + +L Sbjct: 155 -----VSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 190 >gi|224534254|ref|ZP_03674832.1| DNA helicase [Borrelia spielmanii A14S] gi|224514356|gb|EEF84672.1| DNA helicase [Borrelia spielmanii A14S] Length = 698 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 62/154 (40%), Gaps = 42/154 (27%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80 E+++ S+ V A GSGKT +++ +++ L+ N +P+ +L LT T AA EM+ Sbjct: 15 QEKIVFSESKNPILVLAGPGSGKTRVIIAKIVYLIKHMNINPNEILALTFTNKAANEMND 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ L +QT H+F Sbjct: 75 RINDLLKFDKK---------------------------------------LHIQTFHSFG 95 Query: 141 EAIMQQFP--LEANITSHFAIADEEQSKKLIEEA 172 +++ + + N S+F I D + +++ Sbjct: 96 SWLLRCYYKDFDKNYDSNFTIWDTNDVVRFVKQI 129 >gi|170731281|ref|YP_001776714.1| ATP-dependent DNA helicase [Xylella fastidiosa M12] gi|167966074|gb|ACA13084.1| ATP-dependent DNA helicase [Xylella fastidiosa M12] Length = 658 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 59/177 (33%), Gaps = 38/177 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74 + ++ V A AGSGKT ++V+++ L+ ++ +P + +T T + Sbjct: 1 MHGLNSPQRAAVLYREGPLLVLAGAGSGKTRVIVEKIAYLITSDCYPAKRIAAITFTNKS 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV + I + GL + Sbjct: 61 AKEMRERVAKQIKS-------------------------------------SRADGLTIC 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 T HA +Q + F++ D + + I + ++ D + +A Sbjct: 84 TFHALGLKFLQIEHDAVGLKPGFSVFDADDADAQINDLLHGAKQDVIDDTKRRISRA 140 >gi|264676501|ref|YP_003276407.1| exodeoxyribonuclease V subunit beta [Comamonas testosteroni CNB-2] gi|262207013|gb|ACY31111.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni CNB-2] Length = 1269 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 73/194 (37%), Gaps = 21/194 (10%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT + LRL+L + P +L +T T+AA E+S R+ Sbjct: 24 GSRLIEASAGTGKTWTIAALYLRLVLGHGAENGFARALMPPDILVMTFTRAATRELSDRI 83 Query: 83 LEIITAW-----SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 + + + ++ A L + + TI Sbjct: 84 RARLIEAVQCFRGEAEPAAHDSFLRDLRDAYAEGELRDTAAWRLDMAAQCMDDAAIHTID 143 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 A+C+ ++++ ++ + F E + EA + + E+ +A ++ Sbjct: 144 AWCQRMLREHAFDSG--NLFDETLEADESQRQTEAAQDYWRQQCYPLSGEVLEAALQVW- 200 Query: 198 ISNDEDIETLISDI 211 D++ L+ D+ Sbjct: 201 ----PDVQALVKDM 210 >gi|77461740|ref|YP_351247.1| ATP-dependent DNA helicase Rep [Pseudomonas fluorescens Pf0-1] gi|77385743|gb|ABA77256.1| ATP-dependent DNA helicase [Pseudomonas fluorescens Pf0-1] Length = 669 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q + V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 65 KERVGTLLRPGEGR-------------------------------------GLTVCTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHERLGYKPGFSIFDETDVKSLMTDIMQ 123 >gi|32491021|ref|NP_871275.1| hypothetical protein WGLp272 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166227|dbj|BAC24418.1| uvrD [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 719 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 72/209 (34%), Gaps = 44/209 (21%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAA 76 + ++ + + ++ V A AGSGKT +L ++ L+ + H S+++ +T T A Sbjct: 9 NLNDKQKEIITSSYKNILVLAGAGSGKTKVLTNKIAWLIDVKKYHSSSIMAVTFTNKGAK 68 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ +R + +++ + + T Sbjct: 69 EIINR---------------------------------------MKFLIKNLKDIWIGTF 89 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H ++ E+ + +F I D E KLI + S L+ N + E + Sbjct: 90 HGLSYKLLCMHYTESKLFKNFQIIDSEDQLKLIHQINLSM----KLNFNNKSYHNILEYI 145 Query: 197 EISNDEDIETLISDIISNRTALKLIFFFF 225 D+ I +I N L + Sbjct: 146 RNYKDKGIRPSFCEININNKKNILYNKIY 174 >gi|294142626|ref|YP_003558604.1| ATP-dependent DNA helicase Rep [Shewanella violacea DSS12] gi|293329095|dbj|BAJ03826.1| ATP-dependent DNA helicase Rep [Shewanella violacea DSS12] Length = 670 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 43/182 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT +++ ++ L+ + +T T AA Sbjct: 1 MKLNPGQDEAVHYVSGPCLVLAGAGSGKTRVIINKIAHLVQNCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + +AR GL + T Sbjct: 61 REMKERVAKSMGR--------------------------KEAR-----------GLWIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I+++ + F++ D++ S L+++ + L D +++L ++ Sbjct: 84 FHTLGLEIIKKEHKVVGLKKGFSLFDDQDSLALLKDLTEDEL-----DGDKDLLRSLMTT 138 Query: 196 LE 197 + Sbjct: 139 IS 140 >gi|262280866|ref|ZP_06058649.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262257766|gb|EEY76501.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 687 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 70/200 (35%), Gaps = 48/200 (24%) Query: 16 LISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 LI++ ++Q A+ ++ V A AG GKT +V R L+ + + LT T+ A Sbjct: 34 LINELNAQQKKAATTSAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPANQIQILTFTRRA 93 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+E+ RV + + A + GL+ Sbjct: 94 ASEIVARVEQHVGAQAK--------------------------------------GLRAS 115 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H FC ++++ P + F+I D + + L DN + Sbjct: 116 TFHTFCMYLLRRNPQAFGLN-QFSIIDRDDQLLMFR-----LLRGKDKDNVLPKAAELCD 169 Query: 195 ILEISNDEDI---ETLISDI 211 + + + E LI + Sbjct: 170 LYSYARNTQTKLSEALIKQL 189 >gi|308371270|ref|ZP_07424390.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu003] gi|308372459|ref|ZP_07428757.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu004] gi|308376024|ref|ZP_07445856.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu007] gi|308378226|ref|ZP_07481952.2| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu009] gi|308329221|gb|EFP18072.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu003] gi|308333053|gb|EFP21904.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu004] gi|308344515|gb|EFP33366.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu007] gi|308353144|gb|EFP41995.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu009] Length = 1144 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 28/161 (17%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E + + L T + + + P V A AG+GKT + RV+ L+ A P +L Sbjct: 57 ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLG 116 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T+ AA ++ RV + + + Sbjct: 117 LTFTRKAAGQLLRRVRSRLARLAGIGLGCGDPAACAPV---------------------- 154 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 V T HAF ++++ + L + + E + +L Sbjct: 155 -----VSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 190 >gi|260890362|ref|ZP_05901625.1| putative ATP-dependent nuclease subunit A [Leptotrichia hofstadii F0254] gi|260859982|gb|EEX74482.1| putative ATP-dependent nuclease subunit A [Leptotrichia hofstadii F0254] Length = 638 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 75/171 (43%), Gaps = 7/171 (4%) Query: 33 SAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 + + A+AG+GKT+ L + L+ + ++ +T TK A AE+ R+ + + + Sbjct: 4 NIILKASAGTGKTYRLSLEFIANLVRGVNYKNIVVMTFTKKATAEIKERIFDFLYQIAFD 63 Query: 93 SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEAN 152 E + K + + + +++ +++ +++ TI F I + Sbjct: 64 KGNGAELEKNLKEIYKFDNLNKKELQNIYFEMIKNKEDIRISTIDRFTNQIFKNA----- 118 Query: 153 ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDED 203 IT +F I + E +K +E L I+ NEE+ + F I + ++ Sbjct: 119 ITPYFNIYNYEIFEKETDEFYSKVLIKII--ENEEIFQKFKFIFDEKKEKK 167 >gi|218754981|ref|ZP_03533777.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503] gi|289763384|ref|ZP_06522762.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503] gi|289710890|gb|EFD74906.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis GM 1503] Length = 1101 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 28/161 (17%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E + + L T + + + P V A AG+GKT + RV+ L+ A P +L Sbjct: 14 ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLG 73 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T+ AA ++ RV + + + Sbjct: 74 LTFTRKAAGQLLRRVRSRLARLAGIGLGCGDPAACAPV---------------------- 111 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 V T HAF ++++ + L + + E + +L Sbjct: 112 -----VSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 147 >gi|15829169|ref|NP_326529.1| ATP-dependent helicase PcrA [Mycoplasma pulmonis UAB CTIP] gi|14090113|emb|CAC13871.1| ATP-DEPENDENT HELICASE PCRA [Mycoplasma pulmonis] Length = 734 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 42/188 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAA 74 L + + ++ + A AGSGKT ++ ++ L+ P +L LT T A Sbjct: 2 LSNLNQRQKEAVVYTKGPLRIIAGAGSGKTRVITSKIAYLIEHEKIAPWKILGLTFTNKA 61 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R L++I + + Sbjct: 62 AREMKERALKMIGPKASHVEL--------------------------------------S 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H+ C I++Q + +F I DE K++++ L + + + AF Sbjct: 84 TFHSLCNVILKQDIDKIGYPKNFEIVDESDKKQILKGIY---LELAITTKDVSIWDAFDY 140 Query: 195 ILEISNDE 202 I ++ ++ Sbjct: 141 IAKMKKNK 148 >gi|119475297|ref|ZP_01615650.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium HTCC2143] gi|119451500|gb|EAW32733.1| ATP-dependent DNA helicase Rep [marine gamma proteobacterium HTCC2143] Length = 671 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 39/159 (24%) Query: 17 ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 ++Q Q A+ V A AGSGKT ++ Q++ L+ + + +T T A Sbjct: 1 MNQLNPRQREAAHYIDGPLLVLAGAGSGKTSVITQKIAYLIEKCGIKGNHIAAVTFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++++ + AR L+ V Sbjct: 61 AREMKERVSQLVSGPA--------------------------ARGLI-----------VS 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T H I+++ S F+I D++ ++ LI + Sbjct: 84 TFHNLGLNILRKEHKSIGYKSGFSIFDQQDAQALIRDLL 122 >gi|116671302|ref|YP_832235.1| UvrD/REP helicase [Arthrobacter sp. FB24] gi|116611411|gb|ABK04135.1| UvrD/REP helicase [Arthrobacter sp. FB24] Length = 1183 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 66/181 (36%), Gaps = 23/181 (12%) Query: 18 SQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAA 76 S T + + S P V A AGSGKT + RV+ L+ P +L +T T+ AA Sbjct: 26 SPTAEQSAIISSPLTPRLVIAGAGSGKTATMADRVVWLVANGWVRPEEVLGVTFTRKAAG 85 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E++ R+ ++A ++ E I + + KV T Sbjct: 86 ELASRIRSKLSALQRIAAEDTGHRIFPEGLLSEDALEP-----------------KVSTY 128 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEIL 196 H++ I+ + L + + Q+ +L E E + A ++ Sbjct: 129 HSYASGIVSDYGLRLGVERDVVLLGGAQAWQLASEVV-----EAFDGEYEHFRAAKSTLV 183 Query: 197 E 197 + Sbjct: 184 K 184 >gi|315636579|ref|ZP_07891813.1| UvrD/REP family ATP-dependent DNA helicase [Arcobacter butzleri JV22] gi|315479088|gb|EFU69787.1| UvrD/REP family ATP-dependent DNA helicase [Arcobacter butzleri JV22] Length = 684 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 72/207 (34%), Gaps = 37/207 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 LIS S+++ A + A AGSGKT + R+ L+ PS++L LT T AA Sbjct: 6 LISLNDSQKIAAQHVDGPLLILAGAGSGKTKTITTRLAFLISIGIDPSSILTLTFTNKAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R ++ + + +L T Sbjct: 66 TEMRERAFSLLDSSKIFTPPLLC------------------------------------T 89 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H F ++ E ++F I D + K++++ K ++++ + K + Sbjct: 90 FHKFGLLFLKFHMSELERKNNFIIIDTDDKKRILKSINKEIPSALLASEVSKYKNSLMSP 149 Query: 196 LEISNDEDIETLISDIISNRTALKLIF 222 E+ + L +I + Sbjct: 150 SEVKATAQL-KLYQEIAQIYEDYENYL 175 >gi|219684489|ref|ZP_03539432.1| DNA helicase [Borrelia garinii PBr] gi|219671851|gb|EED28905.1| DNA helicase [Borrelia garinii PBr] Length = 698 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 73/187 (39%), Gaps = 50/187 (26%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80 E+++ S V A GSGKT +++ +++ L+ N +P+ +L LT T AA EM+ Sbjct: 15 QEKIVFSKSKNPILVLAGPGSGKTRVIIAKIVYLIKHMNINPNEILALTFTNKAANEMND 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ L +QT H+F Sbjct: 75 RINDLLKFDKK---------------------------------------LHIQTFHSFG 95 Query: 141 EAIMQQFP--LEANITSHFAIADEEQSKKLIEEA-------KKSTLASIMLDNNEELK-K 190 +++ + + N S+F I D K ++E +A+++L + E + Sbjct: 96 SWLLRAYYKNFDRNYDSNFTIWDTNDVVKFVKEINLAPNFEMAKYIAALILKDKENFFLE 155 Query: 191 AFYEILE 197 F + E Sbjct: 156 KFIKFAE 162 >gi|116072446|ref|ZP_01469713.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp. BL107] gi|116064968|gb|EAU70727.1| probable exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp. BL107] Length = 1217 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 76/212 (35%), Gaps = 31/212 (14%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT L LRL+ A+P TLL +T+T+AAA E+ R+ + + Sbjct: 22 LLEASAGTGKTFALAHLTLRLITEAAYPLETLLVVTYTEAAAEELRSRIGQRLQQALVGL 81 Query: 94 DEILSAE--------ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 +++ + + + SD L+ LE + TIH FC ++ Sbjct: 82 EQLENETFPSAPDPVMAAWWEQCMASSDRRIRIRRLLVALEQLDRADIATIHGFCRRSLR 141 Query: 146 QFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF----------- 192 + L+ I E + L E + +L +E + Sbjct: 142 RLALDNGAAIEPQL----ESDAAALQAEVVQHLWQQELLTLPDEQLQGLRQRGLSPQTFG 197 Query: 193 YEILEISND-----EDIETLISDIISNRTALK 219 + + D L+ + R L Sbjct: 198 AALARLDGDPHPRLAGDSALVDGLAPLRDQLP 229 >gi|169797307|ref|YP_001715100.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter baumannii AYE] gi|213155883|ref|YP_002317928.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii AB0057] gi|215484744|ref|YP_002326979.1| ATP-dependent DNA helicase pcrA [Acinetobacter baumannii AB307-0294] gi|294836578|ref|ZP_06781261.1| putative ATP-dependent DNA helicase [Acinetobacter sp. 6013113] gi|294857931|ref|ZP_06795700.1| putative ATP-dependent DNA helicase [Acinetobacter sp. 6013150] gi|301346572|ref|ZP_07227313.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii AB056] gi|301594476|ref|ZP_07239484.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii AB059] gi|169150234|emb|CAM88130.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter baumannii AYE] gi|213055043|gb|ACJ39945.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii AB0057] gi|213986256|gb|ACJ56555.1| ATP-dependent DNA helicase pcrA [Acinetobacter baumannii AB307-0294] Length = 659 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 40/159 (25%) Query: 16 LISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 LI++ ++Q A+ ++ V A AG GKT +V R L+ + + LT T+ A Sbjct: 6 LINELNAQQKKAATTTAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPANQIQILTFTRRA 65 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+E+ RV + + A + GL+ Sbjct: 66 ASEIVARVEQHVGAQAK--------------------------------------GLRAS 87 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T H FC ++++ P +T F+I D + + + Sbjct: 88 TFHTFCMYLLRRNPQAFGLT-QFSIIDRDDQLLMFRLLR 125 >gi|157738288|ref|YP_001490972.1| ATP-dependent DNA helicase UvrD [Arcobacter butzleri RM4018] gi|157700142|gb|ABV68302.1| ATP-dependent DNA helicase, UvrD/PcrA family [Arcobacter butzleri RM4018] Length = 684 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 72/207 (34%), Gaps = 37/207 (17%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 LIS S+++ A + A AGSGKT + R+ L+ PS++L LT T AA Sbjct: 6 LISLNDSQKIAAQHVDGPLLILAGAGSGKTKTITTRLAFLISIGIDPSSILTLTFTNKAA 65 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R ++ + + +L T Sbjct: 66 TEMRERAFSLLDSSKIFTPPLLC------------------------------------T 89 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H F ++ E ++F I D + K++++ K ++++ + K + Sbjct: 90 FHKFGLLFLKFHMSELERKNNFIIIDTDDKKRILKSINKEIPSALLASEVSKYKNSLMSP 149 Query: 196 LEISNDEDIETLISDIISNRTALKLIF 222 E+ + L +I + Sbjct: 150 SEVKATAQL-KLYQEIAQIYEDYENYL 175 >gi|260202354|ref|ZP_05769845.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46] gi|289444772|ref|ZP_06434516.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46] gi|289417691|gb|EFD14931.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis T46] Length = 1101 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 28/161 (17%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E + + L T + + + P V A AG+GKT + RV+ L+ A P +L Sbjct: 14 ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLG 73 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T+ AA ++ RV + + + Sbjct: 74 LTFTRKAAGQLLRRVRSRLARLAGIGLGCGDPAACAPV---------------------- 111 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 V T HAF ++++ + L + + E + +L Sbjct: 112 -----VSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 147 >gi|240142186|ref|YP_002966696.1| putative DNA-dependent ATPase I and helicase II [Methylobacterium extorquens AM1] gi|240012130|gb|ACS43355.1| putative DNA-dependent ATPase I and helicase II [Methylobacterium extorquens AM1] Length = 597 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 53/156 (33%), Gaps = 35/156 (22%) Query: 17 ISQTKSEQLLASDPT-RSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 ++ + A+ R A V A GSGKT L+ R L L ++L T T AA Sbjct: 1 MNLDDDQMRAATHAGPRPAIVIAGPGSGKTRTLIGRHLHLHRTGVPRESILTATFTVKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 E+ R++E S G + V T Sbjct: 61 QEVRARLVEAHGDISETE----------------------------------LGRMFVGT 86 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEE 171 H C +++QF + F I +E L++E Sbjct: 87 FHGLCVRLLRQFHDRVGLPKDFQIVGDEAQIALLKE 122 >gi|203284261|ref|YP_002222001.1| DNA helicase [Borrelia duttonii Ly] gi|201083704|gb|ACH93295.1| DNA helicase [Borrelia duttonii Ly] Length = 698 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 42/155 (27%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79 +Q++ D T V A GSGKT ++ + L+ P +L LT T AA EM+ Sbjct: 15 DQKQIVFDDTTNPILVLAGPGSGKTRVITAKFAHLINEGKVKPEEILALTFTNKAAREMN 74 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R L ++ L +QT H+F Sbjct: 75 FR---------------------------------------LNSLFNFDRSLHIQTFHSF 95 Query: 140 CEAIMQQFP--LEANITSHFAIADEEQSKKLIEEA 172 +++ + + N S+F I D K +++ Sbjct: 96 GAWLLRLYFKEYDENYDSNFTIWDVNDVVKFVKQI 130 >gi|260549135|ref|ZP_05823356.1| I DNA and RNA helicase [Acinetobacter sp. RUH2624] gi|260407863|gb|EEX01335.1| I DNA and RNA helicase [Acinetobacter sp. RUH2624] Length = 659 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 40/159 (25%) Query: 16 LISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 LI++ ++Q A+ ++ V A AG GKT +V R L+ + + LT T+ A Sbjct: 6 LINELNAQQKKAATTTAQNCLVLAGAGCGKTKTIVARAAYLIDQGLSANQIQILTFTRRA 65 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+E+ RV + + A + GL+ Sbjct: 66 ASEIVARVEQHVGAQAK--------------------------------------GLRAS 87 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T H FC ++++ P +T F+I D + + + Sbjct: 88 TFHTFCMYLLRRNPQAFGLT-QFSIIDRDDQLLMFRLLR 125 >gi|15610337|ref|NP_217717.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis H37Rv] gi|15842787|ref|NP_337824.1| UvrD/Rep family helicase [Mycobacterium tuberculosis CDC1551] gi|31794378|ref|NP_856871.1| ATP-dependent DNA helicase [Mycobacterium bovis AF2122/97] gi|121639086|ref|YP_979310.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663060|ref|YP_001284583.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra] gi|148824397|ref|YP_001289151.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis F11] gi|215405207|ref|ZP_03417388.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 02_1987] gi|215432160|ref|ZP_03430079.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis EAS054] gi|224991578|ref|YP_002646267.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Tokyo 172] gi|253800237|ref|YP_003033238.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 1435] gi|254365824|ref|ZP_04981869.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis str. Haarlem] gi|254552298|ref|ZP_05142745.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188244|ref|ZP_05765718.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A] gi|260206546|ref|ZP_05774037.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85] gi|289448884|ref|ZP_06438628.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A] gi|289555474|ref|ZP_06444684.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 605] gi|289575916|ref|ZP_06456143.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85] gi|289747014|ref|ZP_06506392.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987] gi|289755320|ref|ZP_06514698.1| helicase [Mycobacterium tuberculosis EAS054] gi|297635848|ref|ZP_06953628.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 4207] gi|297732844|ref|ZP_06961962.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN R506] gi|307085954|ref|ZP_07495067.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu012] gi|313660177|ref|ZP_07817057.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN V2475] gi|2827611|emb|CAA16666.1| PROBABLE ATP-DEPENDENT DNA HELICASE [Mycobacterium tuberculosis H37Rv] gi|13883113|gb|AAK47638.1| helicase, UvrD/Rep family [Mycobacterium tuberculosis CDC1551] gi|31619974|emb|CAD95318.1| PROBABLE ATP-DEPENDENT DNA HELICASE [Mycobacterium bovis AF2122/97] gi|121494734|emb|CAL73215.1| Probable ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134151337|gb|EBA43382.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis str. Haarlem] gi|148507212|gb|ABQ75021.1| UvrD/Rep family helicase [Mycobacterium tuberculosis H37Ra] gi|148722924|gb|ABR07549.1| hypothetical ATP-dependent DNA helicase [Mycobacterium tuberculosis F11] gi|224774693|dbj|BAH27499.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Tokyo 172] gi|253321740|gb|ACT26343.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 1435] gi|289421842|gb|EFD19043.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CPHL_A] gi|289440106|gb|EFD22599.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 605] gi|289540347|gb|EFD44925.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis K85] gi|289687542|gb|EFD55030.1| UvrD/Rep family helicase [Mycobacterium tuberculosis 02_1987] gi|289695907|gb|EFD63336.1| helicase [Mycobacterium tuberculosis EAS054] gi|308364573|gb|EFP53424.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu012] gi|323718065|gb|EGB27247.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CDC1551A] gi|328459972|gb|AEB05395.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis KZN 4207] Length = 1101 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 28/161 (17%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E + + L T + + + P V A AG+GKT + RV+ L+ A P +L Sbjct: 14 ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLG 73 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T+ AA ++ RV + + + Sbjct: 74 LTFTRKAAGQLLRRVRSRLARLAGIGLGCGDPAACAPV---------------------- 111 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 V T HAF ++++ + L + + E + +L Sbjct: 112 -----VSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 147 >gi|325916135|ref|ZP_08178422.1| ATP-dependent DNA helicase Rep [Xanthomonas vesicatoria ATCC 35937] gi|325537679|gb|EGD09388.1| ATP-dependent DNA helicase Rep [Xanthomonas vesicatoria ATCC 35937] Length = 658 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 67/205 (32%), Gaps = 48/205 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74 + + V A AGSGKT ++V+++ L+ +P + +T T + Sbjct: 1 MHGLNPPQSAAVLHCEGPLLVLAGAGSGKTRVIVEKIAHLIATGRYPAKRIAAITFTNKS 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV + I + GL + Sbjct: 61 AKEMRERVAKRIRG-------------------------------------DGADGLTIC 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HA +Q A + F+I D + + I++ +M + + Sbjct: 84 TFHALGLKFLQIEHAAAGLKRGFSIFDSDDAAAQIKD--------LMHGAKPDAIEDAKN 135 Query: 195 ILEISNDEDI--ETLISDIISNRTA 217 ++ + + + E ++ SNR Sbjct: 136 LISRAKNAGLSPEQAMAAARSNREK 160 >gi|54026511|ref|YP_120753.1| putative DNA helicase [Nocardia farcinica IFM 10152] gi|54018019|dbj|BAD59389.1| putative DNA helicase [Nocardia farcinica IFM 10152] Length = 1184 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 93/240 (38%), Gaps = 25/240 (10%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 S ++ + L T + + + P V A AG+GKT + RV+ ++ P Sbjct: 4 SPHRIADALGLPPPTDEQAAVIAAPPGPTLVVAGAGAGKTETMAARVVWMVANRLVLPEQ 63 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L LT T+ AA +++ R+ + + SA + ++ ++ ++ A Sbjct: 64 VLGLTFTRKAAQQLTARIRTRLARLAG------SALLRELDSGGELRAQLAGA------- 110 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 ++ T H++ ++ + L + + E Q +L + ++ + + Sbjct: 111 -----EPEISTYHSYAGRLLSEHGLLLPVEPSATLLTETQLWQLAHQVVRNWDGDL---D 162 Query: 185 NEELKKAFYEILEISNDEDIETLI--SDIISNRTAL-KLIFFFFSYLWRRKIIEKSLWSI 241 E + E + + + E L+ ++ L KLI + +R K+L I Sbjct: 163 TERTPVSVTEAVLALSGQLAEHLVEPEELAEAHAELEKLINTLPAGPRQRGGPSKALRDI 222 >gi|330470779|ref|YP_004408522.1| uvrd/rep helicase [Verrucosispora maris AB-18-032] gi|328813750|gb|AEB47922.1| uvrd/rep helicase [Verrucosispora maris AB-18-032] Length = 1064 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 39/138 (28%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +++ AS P + A G+GKT L R+ L N P L +T T+ AA E+ HR Sbjct: 518 QRVAASAPGGPLLIVAGPGTGKTRTLTHRIAYLCAELNVFPEQCLAITFTRRAAEELRHR 577 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + ++ + + V T H+ Sbjct: 578 LDGLLGPVAE--------------------------------------DVTVGTFHSLGL 599 Query: 142 AIMQQFPLEANITSHFAI 159 I+++ A + F I Sbjct: 600 TILRENAEAAGLPGDFRI 617 >gi|294993862|ref|ZP_06799553.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis 210] gi|326902572|gb|EGE49505.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis W-148] Length = 1101 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 28/161 (17%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E + + L T + + + P V A AG+GKT + RV+ L+ A P +L Sbjct: 14 ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLG 73 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T+ AA ++ RV + + + Sbjct: 74 LTFTRKAAGQLLRRVRSRLARLAGIGLGCGDPAACAPV---------------------- 111 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 V T HAF ++++ + L + + E + +L Sbjct: 112 -----VSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 147 >gi|301511944|ref|ZP_07237181.1| putative ATP-dependent DNA helicase [Acinetobacter baumannii AB058] Length = 469 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 40/159 (25%) Query: 16 LISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 LI++ ++Q A+ ++ V A AG GKT +V R L+ + + LT T+ A Sbjct: 6 LINELNAQQKKAATTTAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPANQIQILTFTRRA 65 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+E+ RV + + A + GL+ Sbjct: 66 ASEIVARVEQHVGAQAK--------------------------------------GLRAS 87 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T H FC ++++ P +T F+I D + + + Sbjct: 88 TFHTFCMYLLRRNPQAFGLT-QFSIIDRDDQLLMFRLLR 125 >gi|219685458|ref|ZP_03540276.1| DNA helicase [Borrelia garinii Far04] gi|219673014|gb|EED30035.1| DNA helicase [Borrelia garinii Far04] Length = 698 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 75/204 (36%), Gaps = 49/204 (24%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80 E+++ S V A GSGKT +++ +++ L+ N +P+ +L LT T AA EM+ Sbjct: 15 QEKIVFSKSKNPILVLAGPGSGKTRVIIAKIVYLIKHMNINPNEILALTFTNKAANEMND 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ L +QT H+F Sbjct: 75 RINDLLKFDKK---------------------------------------LHIQTFHSFG 95 Query: 141 EAIMQQFP--LEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 +++ + + N S+F I D K ++E + N E K IL+ Sbjct: 96 SWLLRVYYKDFDRNYDSNFTIWDTNDVVKFVKEVN-------LAPNFEMAKHIAALILKD 148 Query: 199 SNDEDIETLISDIISNRTALKLIF 222 + +E I +K+ Sbjct: 149 KENFFLEKFIKFAEKEYEYIKIYE 172 >gi|306782246|ref|ZP_07420583.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu002] gi|306794956|ref|ZP_07433258.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu005] gi|306799158|ref|ZP_07437460.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu006] gi|308325002|gb|EFP13853.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu002] gi|308336739|gb|EFP25590.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu005] gi|308340579|gb|EFP29430.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis SUMu006] Length = 1101 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 28/161 (17%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E + + L T + + + P V A AG+GKT + RV+ L+ A P +L Sbjct: 14 ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLG 73 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T+ AA ++ RV + + + Sbjct: 74 LTFTRKAAGQLLRRVRSRLARLAGIGLGCGDPAACAPV---------------------- 111 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 V T HAF ++++ + L + + E + +L Sbjct: 112 -----VSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 147 >gi|154499859|ref|ZP_02037897.1| hypothetical protein BACCAP_03516 [Bacteroides capillosus ATCC 29799] gi|150271457|gb|EDM98714.1| hypothetical protein BACCAP_03516 [Bacteroides capillosus ATCC 29799] Length = 830 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 68/232 (29%), Gaps = 85/232 (36%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-------------- 59 +D + ++ A + A AGSGKT +L+ R+ L+ Sbjct: 31 LDYQNLNPEQRKAALATEGPLLLLAGAGSGKTTVLIHRIANLMKYGRGSDCDEVPEWVTA 90 Query: 60 ----------AHPS-------------------TLLCLTHTKAAAAEMSHRVLEIITAWS 90 AHP +++ +T T AA E+ R+ ++ Sbjct: 91 EDLAFLEGYVAHPDPEKKAEQERLCRVDPAVPWSIIAITFTNKAAGELKERLERMLGP-- 148 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 + + T H+ C I+++ Sbjct: 149 ------------------------------------SANDIWASTFHSACVRILRRDIDR 172 Query: 151 ANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202 + F I D ++++I++ K LD+ K+ + + D Sbjct: 173 LGFSKSFTIYDTADAERVIKDIIKDF----NLDDKAFPAKSIVGYISRAKDA 220 >gi|299065225|emb|CBJ36391.1| ATP-dependent DNA helicase [Ralstonia solanacearum CMR15] Length = 680 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 30/136 (22%) Query: 37 SANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 A AGSGKT ++ Q++ L+L P + +T T AA EM RV +++ + + Sbjct: 2 LAGAGSGKTRVITQKIAHLILDKGFEPRHIAAVTFTNKAAKEMQERVAKLMDGKTREDGK 61 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 + + L V T H+ I++ + Sbjct: 62 RIPIK-----------------------------QLTVCTFHSLGVQILRTEAEHVGLKP 92 Query: 156 HFAIADEEQSKKLIEE 171 F+I D + LI+E Sbjct: 93 RFSIMDSDDCFGLIQE 108 >gi|260654127|ref|ZP_05859617.1| ATP-dependent DNA helicase PcrA [Jonquetella anthropi E3_33 E1] gi|260631112|gb|EEX49306.1| ATP-dependent DNA helicase PcrA [Jonquetella anthropi E3_33 E1] Length = 673 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 67/201 (33%), Gaps = 48/201 (23%) Query: 7 FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTL 65 + S + ++ + E ++ + + A AGSGKT +L +++ L+ P + Sbjct: 18 LMDESAWLKGLNDAQKEAVVYL--GKRQLILAGAGSGKTRVLTRKIAWLIDAQRVKPWRI 75 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L +T T AA EM R+ + Sbjct: 76 LAVTFTNKAAREMLDRLTASLG-------------------------------------- 97 Query: 126 ETPGGLKVQTIHAFCEAIM-QQFPLE--ANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 E GL+V+T H+F ++ + + D S A K+ L ++ L Sbjct: 98 ENLAGLQVRTFHSFGLQMLFRSRAQLEQLGYPPQCVVYDRADSLS----AAKAVLEALNL 153 Query: 183 DNNEELKKAFYEILEISNDED 203 D + E + + + Sbjct: 154 DPEQYTPAWVLETISKAKNSG 174 >gi|238061857|ref|ZP_04606566.1| UvrD/REP helicase [Micromonospora sp. ATCC 39149] gi|237883668|gb|EEP72496.1| UvrD/REP helicase [Micromonospora sp. ATCC 39149] Length = 1062 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 48/138 (34%), Gaps = 39/138 (28%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +++ AS P + A G+GKT L R+ L N P L +T T+ AA E+ HR Sbjct: 517 QRVAASAPGGPLLIVAGPGTGKTRTLTHRIAYLCAELNVFPERCLAITFTRRAAEELRHR 576 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + ++ + + V T H+ Sbjct: 577 LDGLLGPVAE--------------------------------------DITVGTFHSLGL 598 Query: 142 AIMQQFPLEANITSHFAI 159 I+++ A + + F I Sbjct: 599 TILRENAGAAGLPADFRI 616 >gi|71902080|ref|ZP_00684118.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Ann-1] gi|71728157|gb|EAO30350.1| ATP-dependent DNA helicase RepA [Xylella fastidiosa Ann-1] Length = 658 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 59/177 (33%), Gaps = 38/177 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74 + ++ V A AGSGKT ++V+++ L+ ++ +P + +T T + Sbjct: 1 MHGLNSPQRAAVLYREGPLLVLAGAGSGKTRVIVEKIAYLITSDCYPAKRIAAITFTNKS 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV + I + GL + Sbjct: 61 AKEMRERVAKQIKS-------------------------------------SRADGLTIC 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 T HA +Q + F++ D + + I + ++ D + +A Sbjct: 84 TFHALGLKFLQIEHEAVGLKPGFSVFDADDADAQINDLLHGAKQDVIDDTKRRISRA 140 >gi|299531352|ref|ZP_07044762.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni S44] gi|298720759|gb|EFI61706.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni S44] Length = 1270 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 73/194 (37%), Gaps = 21/194 (10%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT + LRL+L + P +L +T T+AA E+S R+ Sbjct: 24 GSRLIEASAGTGKTWTIAALYLRLVLGHGAENGFARALMPPDILVMTFTRAATRELSDRI 83 Query: 83 LEIITAW-----SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 + + + ++ A L + + TI Sbjct: 84 RARLIEAVQCFRGEAEPAAHDSFLRDLRDAYAEGELRDTAAWRLDMAAQCMDDAAIHTID 143 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 A+C+ ++++ ++ + F E + EA + + E+ +A ++ Sbjct: 144 AWCQRMLREHAFDSG--NLFDETLEADESQRQTEAAQDYWRQQCYPLSGEVLEAALQVW- 200 Query: 198 ISNDEDIETLISDI 211 D++ L+ D+ Sbjct: 201 ----PDVQALVKDM 210 >gi|325578339|ref|ZP_08148474.1| exodeoxyribonuclease V beta subunit [Haemophilus parainfluenzae ATCC 33392] gi|325160075|gb|EGC72204.1| exodeoxyribonuclease V beta subunit [Haemophilus parainfluenzae ATCC 33392] Length = 1213 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 75/196 (38%), Gaps = 23/196 (11%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A+AG+GKT+ + LRLLL + +L +T T+ A ++ ++ E + Sbjct: 20 LIEASAGTGKTYTIGSIYLRLLLQAGENCFSRPLNVEEILVVTFTEMATEDLKRKIRERL 79 Query: 87 TA--------WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 T+ + I + E + P D+ A L + + TIH Sbjct: 80 TSAISVFSEYYETKDKAIFTGEHQFLAELLPYLEDIPTALRRLKLAEQNLDLASIYTIHG 139 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC ++ Q + + HF + + L+++ D L + L Sbjct: 140 FCRRMLMQHAFNSGV--HFNLKLLKDQSDLLKQFANEFWREHFYDLPFHLAAFISKEL-- 195 Query: 199 SNDEDIETLISDIISN 214 + E +++D+ SN Sbjct: 196 ---KSPEEVLNDLGSN 208 >gi|319941481|ref|ZP_08015809.1| hypothetical protein HMPREF9464_01028 [Sutterella wadsworthensis 3_1_45B] gi|319805101|gb|EFW01931.1| hypothetical protein HMPREF9464_01028 [Sutterella wadsworthensis 3_1_45B] Length = 1191 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 9/167 (5%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 R + A+AG+GKT + VLR + + S +L +T T+AA AE+ R+ ++A Sbjct: 77 RPTLLEASAGTGKTFSIKHLVLRFVAEEDVSVSRMLIMTFTRAATAELKARIQSHLSAMH 136 Query: 91 HL------SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 L + + + + D + L L + TIH FC+ ++ Sbjct: 137 GLMTGTFADSAVDAVLLEQRALWAEQGRDPAVIVSRLRESLAQFDNAGIFTIHGFCQKVL 196 Query: 145 QQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + + + F + + L+EE + + +L +E +A Sbjct: 197 EDRAFTSGSSIGFELVENVD--DLVEEVVNEFIRTSLLQLSEREDRA 241 >gi|203287798|ref|YP_002222813.1| DNA helicase [Borrelia recurrentis A1] gi|201085018|gb|ACH94592.1| DNA helicase [Borrelia recurrentis A1] Length = 698 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 42/155 (27%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMS 79 +Q++ D T V A GSGKT ++ + L+ P +L LT T AA EM+ Sbjct: 15 DQKQIVFDDTTNPILVLAGPGSGKTRVITAKFAHLINKGKVKPEEILALTFTNKAAREMN 74 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R L ++ L +QT H+F Sbjct: 75 FR---------------------------------------LNSLFNFDRSLHIQTFHSF 95 Query: 140 CEAIMQQFP--LEANITSHFAIADEEQSKKLIEEA 172 +++ + + N S+F I D K +++ Sbjct: 96 GAWLLRLYFKEYDENYDSNFTIWDVNDVVKFVKQI 130 >gi|257068318|ref|YP_003154573.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM 4810] gi|256559136|gb|ACU84983.1| DNA/RNA helicase, superfamily I [Brachybacterium faecium DSM 4810] Length = 1094 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 72/199 (36%), Gaps = 17/199 (8%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPS 63 +S + ++ T + + P V A AGSGKT + RV+ L+ P Sbjct: 12 HSAARLAALLEQPPPTAEQTAVIEAPLAPMLVVAGAGSGKTETMASRVVWLIANGIVEPR 71 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 +L LT T+ AA E+ R+ + A + A +G + D+ R + Sbjct: 72 QVLGLTFTRKAAHELGERIGARLGALAAALRAEGLALP---RGLERGGDDLVGQRPV--- 125 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 V T + F ++++ L I + S +L E + S+ L+ Sbjct: 126 ---------VHTYNGFALDLVREHALAVGIDPELTMMSTSASWQLAHEIVEGWDDSLDLE 176 Query: 184 NNEE-LKKAFYEILEISND 201 + L A + D Sbjct: 177 ASPATLTAALLSLTSSLAD 195 >gi|297565832|ref|YP_003684804.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946] gi|296850281|gb|ADH63296.1| UvrD/REP helicase [Meiothermus silvanus DSM 9946] Length = 900 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 20/171 (11%) Query: 37 SANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A+AG+GKT LV R L LL + + +T T+ AA E+ RV E + Sbjct: 5 VASAGTGKTASLVLRYLALLASGIPLRRIAGVTFTRKAADELRVRVGEAL---------- 54 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 E G + +R G + TIH F +++ ++ Sbjct: 55 ---EDVLSTGCHLDFVCDPVSRPRFEEARRELSGATLTTIHGFMIECLRRTAPLLSLDPD 111 Query: 157 FAIADEEQSKKLIEEAKKSTL-------ASIMLDNNEELKKAFYEILEISN 200 F++ + +++ EE +S L + E+ A + + Sbjct: 112 FSLIGDWEARAFFEEEWRSLLYLSSDPAHPLFGQAKPEMGDALLHLFAKRS 162 >gi|156743315|ref|YP_001433444.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941] gi|156234643|gb|ABU59426.1| UvrD/REP helicase [Roseiflexus castenholzii DSM 13941] Length = 659 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 56/155 (36%), Gaps = 42/155 (27%) Query: 14 IDLISQTKSEQLLA-SDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + L++ +Q A + P V A AGSGKT +L R+ L+ PS +L LT T Sbjct: 6 MSLLASLNPKQYTAVTAPPGPILVRAGAGSGKTRVLTLRIAYLIAECGVSPSHILALTFT 65 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 AA EM R+ + + GL Sbjct: 66 NKAAREMRQRLRNLPGV--------------------------------------SIRGL 87 Query: 132 KVQTIHAFCEAIMQQFPL-EAN-ITSHFAIADEEQ 164 T H+ C A++++ TS F I E++ Sbjct: 88 TAGTFHSVCAALLREHITGRIGRYTSDFTIYAEDE 122 >gi|78184983|ref|YP_377418.1| exodeoxyribonuclease V, beta subunit RecB [Synechococcus sp. CC9902] gi|78169277|gb|ABB26374.1| DNA helicase/exodeoxyribonuclease V, beta subunit [Synechococcus sp. CC9902] Length = 1208 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 15/164 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT L LRL+ A+P LL +T+T+AAA E+ R+ + + Sbjct: 18 LLEASAGTGKTFALAHLTLRLITEAAYPLEALLVVTYTEAAAEELRSRIGQRLQQALVGL 77 Query: 94 DEILSAE--------ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQ 145 +++ + + + +D L+ LE + TIH FC ++ Sbjct: 78 EQLENEMFPSAPDPVMAAWWEQCTASADRRIRIRRLLVALEQLDRADIATIHGFCRRSLR 137 Query: 146 QFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 + L+ I E + L E + +L +E Sbjct: 138 RLALDNGAAIEPQL----ESDAAALQAEVVQYLWQQELLTLPDE 177 >gi|311693105|gb|ADP95978.1| DNA helicase, ATP-dependent, RepA type [marine bacterium HP15] Length = 672 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 68/206 (33%), Gaps = 44/206 (21%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTK 72 ++ ++ +SE + +D V A AGSGKT ++ +++ L+ P + +T T Sbjct: 1 MNKLNPRQSEAVRYAD--GPMLVLAGAGSGKTSVITRKIAYLIEQLGIPGRHIAAVTFTN 58 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV I+ GL Sbjct: 59 KAAREMKERVGRIVDRKLTR-------------------------------------GLI 81 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T H ++++ F+I D E +K L+++ L + +EL Sbjct: 82 VSTFHNLGLNMIREEHTHLGYHPGFSIFDAEDAKALLQDLM---LREASAEAGDELNDIQ 138 Query: 193 YEILEISN-DEDIETLISDIISNRTA 217 I N +S R Sbjct: 139 MTISSWKNAMRGPAEALSKAADEREQ 164 >gi|254788114|ref|YP_003075543.1| ATP-dependent DNA helicase Rep [Teredinibacter turnerae T7901] gi|237686994|gb|ACR14258.1| ATP-dependent DNA helicase Rep [Teredinibacter turnerae T7901] Length = 673 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 40/161 (24%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTK 72 ++ ++ + E ++ D V A AGSGKT ++ Q++ L+ P+ + +T T Sbjct: 1 MNRLNPRQKEAVMYID--GPCLVLAGAGSGKTSVITQKIAYLIQQCDMPARHIAAVTFTN 58 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV +++ + GL Sbjct: 59 KAAREMKERVGKLVKGKA-------------------------------------AHGLT 81 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 V T H I+++ S F+I D E +K L++E Sbjct: 82 VSTFHNLGLNIIRRELKHLGYKSGFSIFDAEDAKALLKEIM 122 >gi|28199902|ref|NP_780216.1| ATP-dependent DNA helicase/DNA helicase II [Xylella fastidiosa Temecula1] gi|182682653|ref|YP_001830813.1| ATP-dependent DNA helicase Rep [Xylella fastidiosa M23] gi|28058023|gb|AAO29865.1| ATP-dependent DNA helicase/DNA helicase II [Xylella fastidiosa Temecula1] gi|182632763|gb|ACB93539.1| ATP-dependent DNA helicase Rep [Xylella fastidiosa M23] gi|307578933|gb|ADN62902.1| ATP-dependent DNA helicase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 658 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 47/232 (20%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74 + ++ V A AGSGKT ++V+++ L+ ++ +P + +T T + Sbjct: 1 MHGLNSPQRAAVLYREGPLLVLAGAGSGKTRVIVEKIAYLITSDCYPAKRIAAITFTNKS 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV + I + GL + Sbjct: 61 AKEMRERVAKQIKS-------------------------------------SRADGLTIC 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA--- 191 T HA +Q + F++ D + + I + ++ D + +A Sbjct: 84 TFHALGLKFLQIEHEAVGLKPGFSVFDADDADAQINDLLHGAKQDVIDDTKRRISRAKNA 143 Query: 192 ------FYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKS 237 + D ++ TL + + A + F +I+E S Sbjct: 144 GLSPEQALAAARTTRDMEVATLYARYQARLIAFNAVDFDDLIRLPVQILETS 195 >gi|145347097|ref|XP_001418014.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578242|gb|ABO96307.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 657 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 41/155 (26%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ P + V A GSGKTH+L+ RV L+ P +LC+T T AA E+ Sbjct: 2 NDDQRAAVLAPVGATRVLAGPGSGKTHVLIGRVAHLIHELKTPPREILCITFTNKAAREL 61 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + I + AR + T H+ Sbjct: 62 RERLRDKIGDAA--------------------------AREITA-----------GTFHS 84 Query: 139 FCEAIMQQFPLE---ANITSHFAIADEEQSKKLIE 170 ++++ T F I D + SK++++ Sbjct: 85 VAARMLRRHGDRIPGIGRTGEFTIYDADDSKQIVQ 119 >gi|220916545|ref|YP_002491849.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1] gi|219954399|gb|ACL64783.1| UvrD/REP helicase [Anaeromyxobacter dehalogenans 2CP-1] Length = 1195 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 20/135 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANA-----HPSTLLCLTHTKAAAAEMSHRVLEIITAWS 90 VSA AGSGKT LV+ +RLL +A P L +T T+ AA E+ Sbjct: 23 VSAGAGSGKTTALVELCVRLLEGSALGSPCEPRALAAITFTEKAAEELEE-------RLR 75 Query: 91 HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLE 150 A G ++ + + L + V TIH FC ++++ E Sbjct: 76 AAVTARARAAREADPGSPEARAWLER--------LHALDAMAVGTIHGFCGRLLREHAPE 127 Query: 151 ANITSHFAIADEEQS 165 A + A+ DE+++ Sbjct: 128 AGLDPEAAVLDEDRA 142 >gi|315612932|ref|ZP_07887843.1| DNA helicase II [Streptococcus sanguinis ATCC 49296] gi|315315042|gb|EFU63083.1| DNA helicase II [Streptococcus sanguinis ATCC 49296] Length = 955 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 34/158 (21%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 D + ++ S ++A G+GKT+ LVQR + L+ P + T T Sbjct: 1 MFDFGNANDGQRKAISTTEGPVLITAGPGTGKTYTLVQRAIYLIEECGIKPEEIFIATFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + AA E+ R+ + + I + Sbjct: 61 EKAAKELITRITNELAS---------------------------------RDISVNVNEM 87 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 V T H+ C I++ + ++ + D + L+ Sbjct: 88 YVGTFHSLCLRIIKDNLEYTRLKKNYRLLDTFDQQYLV 125 >gi|296446499|ref|ZP_06888442.1| UvrD/REP helicase [Methylosinus trichosporium OB3b] gi|296255995|gb|EFH03079.1| UvrD/REP helicase [Methylosinus trichosporium OB3b] Length = 1135 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 38/167 (22%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 T+ ++ A+ + A G+GKT LV RV L+ P + LT++ AA E++ Sbjct: 197 TERQRDAAAHRGAPYLLEAGPGTGKTKTLVARVAGLIADGEDPRATVVLTYSNKAACELA 256 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ + + + T HAF Sbjct: 257 ERIG--------------------------------------AQHPDAAAAMWIGTFHAF 278 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 ++Q+F E S + D + L+ + S D + Sbjct: 279 GLNLIQRFHREMGYESEPGLIDRPDAIALLLDRVASLDLKHYRDLYD 325 >gi|206603867|gb|EDZ40347.1| Putative ATP-dependent DNA helicase, UvrD/REP family [Leptospirillum sp. Group II '5-way CG'] Length = 746 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 41/169 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++Q S V A AGSGKT +++ R+L LL LL +T T+ AA E+ Sbjct: 7 NPAQQEAVSHEGGPLLVLAPAGSGKTRVVIARLLYLLDRYGWSEERLLVVTFTRKAAREL 66 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 HR+ + + V T H+ Sbjct: 67 LHRI---------------------------------------SRLRPSSRPSWVGTFHS 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK-KSTLASIMLDNNE 186 +++Q ++ F I D ++I + + L+ +D + Sbjct: 88 VAARMLRQHAERVDLPREFTIVDGPDQLQMIRDLLGRQGLSDKEVDPKK 136 >gi|152964961|ref|YP_001360745.1| exodeoxyribonuclease V, beta subunit [Kineococcus radiotolerans SRS30216] gi|151359478|gb|ABS02481.1| exodeoxyribonuclease V, beta subunit [Kineococcus radiotolerans SRS30216] Length = 1125 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 6/151 (3%) Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLEIITA 88 P + + A+AG+GKT+ + V R + LL +T +AA AE+ RV E + A Sbjct: 18 PVATTVLEASAGTGKTYTIAGLVTRYVAEGVATVDQLLVVTFGRAATAELRDRVRERLVA 77 Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKA---RHLLITILETPGGLKVQTIHAFCEAIMQ 145 + SA ++ +D ++A R L L V TIH FC ++ Sbjct: 78 TRDALADPASARRSRDAVLAHLAADDARAAEHRARLSEALAGFDTATVATIHEFCRQVLT 137 Query: 146 QFPLEANITSHFAIADEEQSKKLIEEAKKST 176 A++ + ++ L+EE Sbjct: 138 SLGTAADVDPSATLVEDVD--DLVEEVCDDL 166 >gi|163783724|ref|ZP_02178711.1| ATP-dependent DNA helicase REP [Hydrogenivirga sp. 128-5-R1-1] gi|159881049|gb|EDP74566.1| ATP-dependent DNA helicase REP [Hydrogenivirga sp. 128-5-R1-1] Length = 167 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 48/189 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEM 78 ++ + + V A AGSGKT L +V +L P ++LC+T T AA E+ Sbjct: 3 NPQQERVVRHHGKPLLVVAGAGSGKTKTLAHKVEFILSELGAPRESVLCITFTNKAAKEI 62 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + V T H+ Sbjct: 63 GERVYSVTGTELP----------------------------------------WVGTFHS 82 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 +++ +A I +F++ADE +K ++ E KS I ++ +++++A + E Sbjct: 83 IAYRLLRA---DAGI--NFSVADESDTKSILRELLKSF--DIRQEDYDKVRRAISRVKED 135 Query: 199 SNDEDIETL 207 + E L Sbjct: 136 LGEIKSEEL 144 >gi|85060368|ref|YP_456070.1| ATP-dependent DNA helicase Rep [Sodalis glossinidius str. 'morsitans'] gi|84780888|dbj|BAE75665.1| ATP-dependent DNA helicase Rep [Sodalis glossinidius str. 'morsitans'] Length = 675 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 67/179 (37%), Gaps = 43/179 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 S+Q T V A AGSGKT ++ ++ L+ + +T T A+ EM Sbjct: 4 NPSQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQVRHIAAVTFTNKASREM 63 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV + + ++AR GL V T H Sbjct: 64 KERVAQTLGR--------------------------AEAR-----------GLTVATFHT 86 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 AI+++ + + F++ DE+ L+++ L+ L+ +++L K+ + Sbjct: 87 LGLAIIKREYKALGMKAKFSLFDEQDQLALLKD-----LSEQWLEGDKDLLKSLTSAIS 140 >gi|296137089|ref|YP_003644331.1| exodeoxyribonuclease V, beta subunit [Thiomonas intermedia K12] gi|295797211|gb|ADG32001.1| exodeoxyribonuclease V, beta subunit [Thiomonas intermedia K12] Length = 1202 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 63/164 (38%), Gaps = 17/164 (10%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P +L +T T+AA E++ Sbjct: 16 QGSRLIEASAGTGKTWTIAALYLRLVLGHGDEASAFARPLSPEQILVMTFTRAATRELAE 75 Query: 81 RVLEIITAWSH-----LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 R+ + + ++ + + ++ P S A L + V T Sbjct: 76 RIRARLVEAAQCFQGTIAPKADDEFLLRLLDSYPPGSARQTAAWRLAMAAQAMDDAAVFT 135 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 I A+C+ ++++ ++ + + +L +A Sbjct: 136 IDAWCQRMLREHAFDSGHSFDEDLL--ADEGELTTQAVHDFWRQ 177 >gi|126640515|ref|YP_001083499.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter baumannii ATCC 17978] gi|126386399|gb|ABO10897.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter baumannii ATCC 17978] Length = 659 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 40/159 (25%) Query: 16 LISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 LI++ ++Q A+ ++ V A AG GKT +V R L+ + + LT T+ A Sbjct: 6 LINELNAQQKKAATTKAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPANQIQILTFTRRA 65 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+E+ RV + + A + GL+ Sbjct: 66 ASEIVARVEQHVGAQAK--------------------------------------GLRAS 87 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T H FC ++++ P +T F+I D + + + Sbjct: 88 TFHTFCMYLLRRNPQAFGLT-QFSIIDRDDQLLMFRLLR 125 >gi|307700038|ref|ZP_07637087.1| UvrD/REP helicase [Mobiluncus mulieris FB024-16] gi|307614799|gb|EFN94019.1| UvrD/REP helicase [Mobiluncus mulieris FB024-16] Length = 1213 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 81/206 (39%), Gaps = 23/206 (11%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAE 77 T+ ++ + P V A AGSGKT + R++ ++ A P ++L LT TK A AE Sbjct: 23 PTEEQEQVIKAPLEPLLVVAGAGSGKTETIANRLVYWVVNGAISPQSVLGLTFTKKATAE 82 Query: 78 MSHRVLEIITAWSHLSDEILSA------EITKIQGKKPNKSDMSKARHLLITILETPGGL 131 M R + + ++ +++ E+ + D SK + ++ L Sbjct: 83 MGQRFALRLDNLAQNLEKFVASPSRFEVEMCRQLKGDWQWRDDSKIHGFIRSLTAGLHAL 142 Query: 132 K--------------VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 + V T A ++ +F + A S + + +++ + ++ + Sbjct: 143 RESGMTSRILRSGVEVSTYDALASKVLTEFGVLAGRDSGYQTITDGTRFQIMSQILETWV 202 Query: 178 ASIMLDNNE--ELKKAFYEILEISND 201 +++ E + +L ++ D Sbjct: 203 SNLSYREEEGASVGNFIEGLLHLAGD 228 >gi|227875854|ref|ZP_03993980.1| UvrD/REP helicase [Mobiluncus mulieris ATCC 35243] gi|306819135|ref|ZP_07452849.1| UvrD/REP helicase subfamily [Mobiluncus mulieris ATCC 35239] gi|227843602|gb|EEJ53785.1| UvrD/REP helicase [Mobiluncus mulieris ATCC 35243] gi|304648111|gb|EFM45422.1| UvrD/REP helicase subfamily [Mobiluncus mulieris ATCC 35239] Length = 1213 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 81/206 (39%), Gaps = 23/206 (11%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAE 77 T+ ++ + P V A AGSGKT + R++ ++ A P ++L LT TK A AE Sbjct: 23 PTEEQEQVIKAPLEPLLVVAGAGSGKTETIANRLVYWVVNGAISPQSVLGLTFTKKATAE 82 Query: 78 MSHRVLEIITAWSHLSDEILSA------EITKIQGKKPNKSDMSKARHLLITILETPGGL 131 M R + + ++ +++ E+ + D SK + ++ L Sbjct: 83 MGQRFALRLDNLAQNLEKFVASPSRFEVEMCRQLKGDWQWRDDSKIHGFIRSLTAGLHAL 142 Query: 132 K--------------VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 + V T A ++ +F + A S + + +++ + ++ + Sbjct: 143 RESGMTSRILRSGVEVSTYDALASKVLTEFGVLAGRDSGYQTITDGTRFQIMSQILETWV 202 Query: 178 ASIMLDNNE--ELKKAFYEILEISND 201 +++ E + +L ++ D Sbjct: 203 SNLSYREEEGASVGNFIEGLLHLAGD 228 >gi|260556195|ref|ZP_05828414.1| ATP-dependent DNA helicase PcrA [Acinetobacter baumannii ATCC 19606] gi|260410250|gb|EEX03549.1| ATP-dependent DNA helicase PcrA [Acinetobacter baumannii ATCC 19606] Length = 688 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 40/159 (25%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 LI++ ++Q A+ ++ V A AG GKT +V R L+ + + LT T+ A Sbjct: 35 LINELNAQQKKAATTMAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPANQIQILTFTRRA 94 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+E+ RV + + A + GL+ Sbjct: 95 ASEIVARVEQHVGAQAK--------------------------------------GLRAS 116 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T H FC ++++ P +T F+I D + + + Sbjct: 117 TFHTFCMYLLRRNPQAFGLT-QFSIIDRDDQLLMFRLLR 154 >gi|261367063|ref|ZP_05979946.1| ATP-dependent DNA helicase [Subdoligranulum variabile DSM 15176] gi|282571182|gb|EFB76717.1| ATP-dependent DNA helicase [Subdoligranulum variabile DSM 15176] Length = 871 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 63/219 (28%), Gaps = 81/219 (36%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-------------------------- 56 ++ + A AGSGKT +LV R+ ++ Sbjct: 27 QRQAVFTTEGPLLILAGAGSGKTTVLVNRIANIIRFGSAHGSKELPRTVTQQDLEDLRAT 86 Query: 57 ---------------LANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEI 101 + A P +L +T T AA E+ R+ ++ Sbjct: 87 VQSGRDLPRETAYLAVRPARPWNVLAITFTNKAAGELKERLRAMLGETMG---------- 136 Query: 102 TKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIAD 161 G + T H+ C I+++ F I D Sbjct: 137 ---------------------------GDVNASTFHSACVRILRRDAERIGFPKSFTIYD 169 Query: 162 EEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISN 200 + ++++++ K ++ D +K A +I + Sbjct: 170 SDDQQRVLKQIYKD---KMIDDKFLPIKSAVSQISSYKD 205 >gi|62261380|gb|AAX77985.1| unknown protein [synthetic construct] Length = 706 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 65/169 (38%), Gaps = 40/169 (23%) Query: 8 QEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLL 66 + E +D ++Q + + + V A AGSGKT ++++++ L+ +P ++L Sbjct: 22 KHMLEMLDNLNQQQQQAVKYI--ATPLLVLAGAGSGKTSVIIEKISYLIEQLLYPAKSIL 79 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 +T T AA EM RV + D K++ Sbjct: 80 AVTFTNKAAKEMQERVKSRL--------------------------DKEKSK-------- 105 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 GL + T H+ +I+++ E +F + D S LI + Sbjct: 106 ---GLMISTFHSLGLSILKKHFNELGYKKNFTLFDSHDSLALIYDIAYD 151 >gi|93005402|ref|YP_579839.1| UvrD/REP helicase [Psychrobacter cryohalolentis K5] gi|92393080|gb|ABE74355.1| ATP-dependent DNA helicase Rep [Psychrobacter cryohalolentis K5] Length = 677 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 70/188 (37%), Gaps = 41/188 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74 + +Q + V A AGSGKT ++ +++ L+ P + +T T A Sbjct: 1 MSQLNPKQQEAMLYVSGPLLVLAGAGSGKTSVITRKIAYLIEECNMPAERITAVTFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +++ + E GL V Sbjct: 61 AREMKARVSKLLPS-------------------------------------EKTRGLTVS 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-KKSTLASIMLDNNEELKKAFY 193 T H F ++ L + +F+I D + SK+L+ E + L+ ++ E + KA Sbjct: 84 TFHQFGLQFLRYELLHTPLKGNFSIMDSDDSKRLLMELMMRDNLS--GAESRELVGKAIK 141 Query: 194 EILEISND 201 I + ND Sbjct: 142 MISDWKND 149 >gi|114561615|ref|YP_749128.1| ATP-dependent DNA helicase Rep [Shewanella frigidimarina NCIMB 400] gi|114332908|gb|ABI70290.1| ATP-dependent DNA helicase Rep [Shewanella frigidimarina NCIMB 400] Length = 670 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 38/157 (24%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 + + + V A AGSGKT +++ ++ L+ + +T T AA Sbjct: 1 MKLNPGQNEAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVEKCGYKARNIAAVTFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + +AR GL + T Sbjct: 61 REMKERVAQSMGR--------------------------KEAR-----------GLWIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA 172 H I+++ + + F++ D++ + L++E Sbjct: 84 FHTLGLEIIKREHKVLGLKAGFSLFDDQDTFALLKEL 120 >gi|329895335|ref|ZP_08270960.1| ATP-dependent DNA helicase Rep [gamma proteobacterium IMCC3088] gi|328922348|gb|EGG29692.1| ATP-dependent DNA helicase Rep [gamma proteobacterium IMCC3088] Length = 664 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 42/162 (25%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 ++ + + + D V A AGSGKT ++ Q++ L+ P ++ +T T AA Sbjct: 4 LNPAQRDAVRYLD--GPLLVLAGAGSGKTSVITQKIAYLVEQCELPPKKVVAVTFTNKAA 61 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV +I E GL V T Sbjct: 62 REMRTRV---------------------------------------NSICEKAKGLWVST 82 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 H +I+++ + F+I D++ + +++E L Sbjct: 83 FHQLGLSIVRKEHHLLGLRPGFSIFDQQDAVTIMKELLVQEL 124 >gi|58038276|ref|YP_190245.1| DNA helicase II UvrD [Gluconobacter oxydans 621H] gi|58000690|gb|AAW59589.1| DNA helicase II UvrD [Gluconobacter oxydans 621H] Length = 682 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 62/171 (36%), Gaps = 39/171 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVL-RLLLANAHPSTLLCLTHTKAAA 75 +S Q A+ T V A AG+GKT LV ++ R++ P +L +T T AA Sbjct: 14 LSGLTPSQADAARQTGPVVVLAGAGTGKTKTLVAGIVDRVVKRRMSPDRILAVTFTNKAA 73 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+ + I + P V T Sbjct: 74 GEMKTRIAAAL------------------------------------NIAQAPY--WVGT 95 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 HA ++ P A + F + D E S K++ + + + +++ ++ Sbjct: 96 FHAHGRRQLRTDPDIAGLRPGFDVCDSEDSTKIVRRLLEKAIEAGVMNADD 146 >gi|87122177|ref|ZP_01078060.1| exodeoxyribonuclease V, 135 kDa subunit [Marinomonas sp. MED121] gi|86162497|gb|EAQ63779.1| exodeoxyribonuclease V, 135 kDa subunit [Marinomonas sp. MED121] Length = 1255 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 12/155 (7%) Query: 35 WVSANAGSGKTHILVQRVLRLLL---------ANAHPSTLLCLTHTKAAAAEMSHRVLEI 85 + A+AG+GKT+ + LRLLL +L +T T+AA AE+ R+ Sbjct: 25 LIEASAGTGKTYTIANLYLRLLLPIDSKSGFERALTVDEILVVTFTEAATAELKARIRNR 84 Query: 86 ITAWSH-LSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIM 144 I L +++++ L+ + + TIH FC+ ++ Sbjct: 85 IREARKALLLGQTKDPFLSQLLASMTEAEIALGVERLLYAEKQMDEAAIFTIHGFCQRML 144 Query: 145 QQFPLEANITSHFAIADEEQS--KKLIEEAKKSTL 177 Q E+ + I +EQ+ I++ +S + Sbjct: 145 SQNAFESRMLFQQEIETDEQAPLAMAIKDVWRSNI 179 >gi|262203378|ref|YP_003274586.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247] gi|262086725|gb|ACY22693.1| UvrD/REP helicase [Gordonia bronchialis DSM 43247] Length = 1119 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 19/164 (11%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 S + + L + T + + P V A AG+GKT + RV+ L+ P Sbjct: 3 SATSLAAALGLPTPTAEQAAVIEGPIEPMLVVAGAGAGKTETMAARVVWLVANQLIGPDE 62 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L LT T+ AA+E+ R+ ++ S ++ P + ++ R Sbjct: 63 ILGLTFTRKAASELGARIRRRLSMLSGSP---------ALRSWDPEGTLAARLRGADPE- 112 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 V T HA+ ++ + L + + + E + +L Sbjct: 113 --------VSTYHAYAGRLISDYGLLLPVEPNSTLLSETELWQL 148 >gi|300813620|ref|ZP_07093948.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512256|gb|EFK39428.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 229 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 80/193 (41%), Gaps = 37/193 (19%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHR 81 +Q ++ ++ + + AG+GKT +L QR + ++ N +L LT T A EM++R Sbjct: 7 QQKASTILDKNISLISGAGTGKTGVLTQRFINIIKAQNGKFDNILALTFTDKATEEMNNR 66 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + + S+ L + TIH+FC+ Sbjct: 67 IYHELAKTSYDF---------------------------------NIDKLNIMTIHSFCK 93 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND 201 ++ + +I S+F + ++ + L++E+ K L++ NNE+ ++ Sbjct: 94 DLILSYNRYLHINSNFDLDNDFFCQILLKESIKKILSTY---NNEDYLSFLLDLNFSIVP 150 Query: 202 EDIETLISDIISN 214 D+E + D+ + Sbjct: 151 RDVEAIFFDLYNR 163 >gi|216264361|ref|ZP_03436353.1| DNA helicase [Borrelia burgdorferi 156a] gi|215980834|gb|EEC21641.1| DNA helicase [Borrelia burgdorferi 156a] Length = 698 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 70/190 (36%), Gaps = 50/190 (26%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T E+++ S V A GSGKT +++ +++ L+ N P+ +L LT T AA E Sbjct: 12 NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKYMNIDPNEILALTFTNKAANE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ R+ +++ L +QT H Sbjct: 72 MNDRINDLLKFDKK---------------------------------------LHIQTFH 92 Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187 +F +++ + + N S+F I D K ++ E K A I+ D Sbjct: 93 SFGSWLLRVYYKDFDENYDSNFTIWDTNDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 152 Query: 188 LKKAFYEILE 197 + F + E Sbjct: 153 FLEKFIQFTE 162 >gi|239817530|ref|YP_002946440.1| exodeoxyribonuclease V, subunit beta [Variovorax paradoxus S110] gi|239804107|gb|ACS21174.1| exodeoxyribonuclease V, beta subunit [Variovorax paradoxus S110] Length = 1263 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 16/137 (11%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH------------PSTLLCLTHTKAAAAEMS 79 S + A+AG+GKT + +RL+L + PS +L +T T+AA E+S Sbjct: 14 GSRLIEASAGTGKTWTIAALYVRLVLGHGASDPDQGFGRPLIPSEILVMTFTRAATRELS 73 Query: 80 HRVLEIITAWSHL----SDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 R+ + + S + +T++ S + A L E+ V T Sbjct: 74 DRIRARLLDAARCFRGESPAAGDSLMTELLASYAPGSARTHAAWRLAMAAESMDDAAVHT 133 Query: 136 IHAFCEAIMQQFPLEAN 152 I A+C+ ++++ ++ Sbjct: 134 IDAWCQRMLREHAFDSG 150 >gi|71065150|ref|YP_263877.1| ATP-dependent DNA helicase Rep [Psychrobacter arcticus 273-4] gi|71038135|gb|AAZ18443.1| ATP-dependent DNA helicase Rep [Psychrobacter arcticus 273-4] Length = 677 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 70/188 (37%), Gaps = 41/188 (21%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74 + +Q + V A AGSGKT ++ +++ L+ P + +T T A Sbjct: 1 MSQLNPKQQEAMLYVSGPLLVLAGAGSGKTSVITRKIAYLIEECNMPAERITAVTFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +++ + E GL V Sbjct: 61 AREMKARVSKLLPS-------------------------------------EKTRGLTVS 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEA-KKSTLASIMLDNNEELKKAFY 193 T H F ++ L + +F+I D + SK+L+ E + L+ ++ E + KA Sbjct: 84 TFHQFGLQFLRYELLHTPLKGNFSIMDSDDSKRLLMELMMRDNLS--GAESRELVGKAIK 141 Query: 194 EILEISND 201 I + ND Sbjct: 142 MISDWKND 149 >gi|320593539|gb|EFX05948.1| ATP-dependent DNA helicase [Grosmannia clavigera kw1407] Length = 1099 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 40/169 (23%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLC 67 + +D ++ + +++S T + A GSGKTH L RV+ L+ A P ++ Sbjct: 69 NSTSILDSLNPAQRRAVVSSANT--VAILAGPGSGKTHTLTSRVVWLVDALGYRPQDVIV 126 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 T T AA EM R+ +++ + R +++ Sbjct: 127 ATFTVKAAREMKERIGKVLCDG--------------------------RERRIVL----- 155 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ + + ++ F+I D+ SK ++ K Sbjct: 156 ------GTFHSVARRYLATYGKRIGLSQKFSIIDDADSKAILTRIIKRL 198 >gi|325124416|gb|ADY83939.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter calcoaceticus PHEA-2] Length = 659 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 74/227 (32%), Gaps = 48/227 (21%) Query: 16 LISQTKSEQL-LASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 LI++ ++Q A+ ++ V A AG GKT +V R L+ + + LT T+ A Sbjct: 6 LINELNAQQKKAATTSAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPANQIQILTFTRRA 65 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+E+ RV + + + GL+ Sbjct: 66 ASEIVARVEQHVGVQAK--------------------------------------GLRAS 87 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H FC ++++ P + F+I D + + L DN + Sbjct: 88 TFHTFCMYLLRRNPQAFGLN-QFSIIDRDDQLLMFR-----LLRGKDKDNVLPKAAELCD 141 Query: 195 ILEISNDED---IETLISDIISNRTALKLIFFFFSYLWRRKIIEKSL 238 + + + E LI + I +RK L Sbjct: 142 LYSYARNTQSKLSEALIKQLPDAYEHKTQIAELMKTYEQRKRERNFL 188 >gi|312149762|gb|ADQ29833.1| DNA helicase [Borrelia burgdorferi N40] Length = 698 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 69/190 (36%), Gaps = 50/190 (26%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T E+++ S V A GSGKT +++ +++ L+ N P+ +L LT T AA E Sbjct: 12 NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKYMNIDPNEILALTFTNKAANE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ R+ +++ L +QT H Sbjct: 72 MNDRINDLLKFDKK---------------------------------------LHIQTFH 92 Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187 +F +++ + N S+F I D K ++ E K A I+ D Sbjct: 93 SFGSWLLRVYYKDFNENYDSNFTIWDTNDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 152 Query: 188 LKKAFYEILE 197 + F E E Sbjct: 153 FLEKFIEFTE 162 >gi|282858205|ref|ZP_06267396.1| ATP-dependent nuclease subunit A (ATP-dependent helicase addA) [Pyramidobacter piscolens W5455] gi|282583957|gb|EFB89334.1| ATP-dependent nuclease subunit A (ATP-dependent helicase addA) [Pyramidobacter piscolens W5455] Length = 558 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 69/187 (36%), Gaps = 23/187 (12%) Query: 23 EQLLASDPTRSA-WVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHR 81 EQ+ A V A AG+GKT L R + +L +L LT T+ AA+EM R Sbjct: 30 EQVEAITSEAPLTVVGAGAGTGKTWTLAWRFVWTVLTREDVRHMLTLTFTEKAASEMRRR 89 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + +A + ++ +++S+ R L + + TIH F Sbjct: 90 I---------------AALLADLEPALAASAELSRRR---AAALVSLDQAYISTIHGFGA 131 Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEE---AKKSTLASIM-LDNNEELKKAFYEILE 197 ++ + L + + + ++ + E A A + E A E+L Sbjct: 132 RVIGEAGLSLPVEPSPRLVGDAEASEFWRELAGALDRLDAEWFCWGMDREYGAAARELLN 191 Query: 198 ISNDEDI 204 D+ Sbjct: 192 GDGAADV 198 >gi|50954629|ref|YP_061917.1| ATP-dependent DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951111|gb|AAT88812.1| ATP-dependent DNA helicase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 1125 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 27/196 (13%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 S E ++ + L T +Q + P A V A AGSGKT + RV+ LL Sbjct: 35 SALEIADALGLPRPTGQQQAVVEAPLSPAIVVAGAGSGKTETMANRVVWLLANGEVRVPE 94 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L LT T+ AA E++ RV + I + ++ +T+I+ D++ Sbjct: 95 VLGLTFTRKAAGELAERVRKRIEQLA-------ASGLTEIEFDPFEAPDVA--------- 138 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDN 184 T +AF AI ++ L A+ E + +L + + D Sbjct: 139 ----------TYNAFANAIFRENALFIGREPEAAVLSEASAWQLARRVVVDSADDRLADL 188 Query: 185 NEELKKAFYEILEISN 200 + + +L +S Sbjct: 189 DRNVDAVTTAVLNLSR 204 >gi|301156242|emb|CBW15713.1| exonuclease V (RecBCD complex), beta subunit [Haemophilus parainfluenzae T3T1] Length = 1226 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 68/183 (37%), Gaps = 18/183 (9%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANA--------HPSTLLCLTHTKAAAAEMSHRVLEII 86 + A+AG+GKT+ + LRLLL + +L +T T+ A ++ ++ E + Sbjct: 20 LIEASAGTGKTYTIGSIYLRLLLQAGENRFSRPLNVEEILVVTFTEMATEDLKRKIRERL 79 Query: 87 TA--------WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 TA + I + E + P D+ A L + + TIH Sbjct: 80 TAAISVFSEYYETKDKAIFTGEHQFLAELLPYLKDIPTALRRLKLAEQNLDLASIYTIHG 139 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 FC ++ Q + + HF + + L+++ E+ + L Sbjct: 140 FCRRMLMQHAFNSGV--HFNLKLLKDQSDLLKQFANEFWREHFYSQPFEIANFISKELGS 197 Query: 199 SND 201 +D Sbjct: 198 PDD 200 >gi|34499523|ref|NP_903738.1| ATP-dependent DNA helicase [Chromobacterium violaceum ATCC 12472] gi|34105373|gb|AAQ61728.1| ATP-dependent DNA helicase [Chromobacterium violaceum ATCC 12472] Length = 673 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 55/158 (34%), Gaps = 38/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAAAEM 78 ++ V A AGSGKT ++ ++ L+ P+ + +T T AA EM Sbjct: 7 NPPQRAAIHYLDGPLLVLAGAGSGKTRVITYKIAHLVREGGIPARHIAAITFTNKAAREM 66 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++++ G+ V T H+ Sbjct: 67 LERVGKLMSSAEIR-------------------------------------GITVSTFHS 89 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 I++Q + F+I D + K+I + +T Sbjct: 90 LGMHILRQEAPHLGYKTQFSILDAYDAGKIIADILNTT 127 >gi|255326996|ref|ZP_05368072.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296] gi|255296213|gb|EET75554.1| ATP-dependent DNA helicase [Rothia mucilaginosa ATCC 25296] Length = 1564 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 26/186 (13%) Query: 4 HNSFQEHSETI---DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59 + S + +E + D T + + V A AGSGKT +V RV+ L+ Sbjct: 58 YRSALDIAEMLNGADGKKPTPEQVRMIEAGPAPTLVIAGAGSGKTATMVDRVIWLVDNGF 117 Query: 60 AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119 P +L +T T+ AA E+ R+ + S E + P Sbjct: 118 VRPEEVLGVTFTRKAATELRSRMRAGLNTLRRSRRVAPSDEELREGIADP---------- 167 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 V T H++ +++++ L + + + Q +L + + Sbjct: 168 ------------TVLTYHSYANNLVKEYGLRLGVEQDAQMLGDAQKWQLAAQIVQYWEGE 215 Query: 180 IMLDNN 185 + LD + Sbjct: 216 LPLDKD 221 >gi|319950042|ref|ZP_08024010.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4] gi|319436292|gb|EFV91444.1| UvrD/Rep family ATP-dependent DNA helicase [Dietzia cinnamea P4] Length = 511 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 70/176 (39%), Gaps = 19/176 (10%) Query: 11 SETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLT 69 ++ + + T+ + + + PT V A AG+GKT + RV+ L+ A P +L LT Sbjct: 11 ADALGIHRPTREQAEVIAGPTEPTLVLAGAGAGKTETMAARVVWLVANGHARPGEILGLT 70 Query: 70 HTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPG 129 T+ AA ++S R+ + D + + + G P ++ + Sbjct: 71 FTRKAAQQLSRRIRRRL-------DALARSALCTGPGADPAIAEAIRTE----------- 112 Query: 130 GLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 ++ T HAF ++ + L + + + +L + + + +N Sbjct: 113 DPQISTYHAFAGTLLGTYGLLVPVEPDSRLLTPTAAFQLAHDVVSRWESPLTTGSN 168 >gi|302918178|ref|XP_003052603.1| hypothetical protein NECHADRAFT_36498 [Nectria haematococca mpVI 77-13-4] gi|256733543|gb|EEU46890.1| hypothetical protein NECHADRAFT_36498 [Nectria haematococca mpVI 77-13-4] Length = 1057 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 57/162 (35%), Gaps = 38/162 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 L S ++++ + + + A GSGKTH L RV+ L+ PS ++ T T A Sbjct: 11 LRSLNQAQRRAVTSSASTVAILAGPGSGKTHTLTSRVVWLVQRVGYRPSDVIVATFTVKA 70 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM R+ + + E + + Sbjct: 71 AREMKDRIGKALGE-------------------------------------ECEKKIVLG 93 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H+ + + + S F IAD+ SK +I+ K Sbjct: 94 TFHSIARRYLSIYGNRIGLDSKFGIADDGDSKAIIQRICKRL 135 >gi|224823785|ref|ZP_03696894.1| ATP-dependent DNA helicase Rep [Lutiella nitroferrum 2002] gi|224604240|gb|EEG10414.1| ATP-dependent DNA helicase Rep [Lutiella nitroferrum 2002] Length = 672 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 38/158 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ V A AGSGKT ++ +++ L+ + +T T AA EM Sbjct: 7 NPPQRAAIHYLDGPLLVLAGAGSGKTRVITFKIMHLIREAKMDARNIAAITFTNKAAREM 66 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV +++T GL V T H+ Sbjct: 67 LERVTKLMTPAEVR-------------------------------------GLTVSTFHS 89 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 I++Q F+I D + K+I + ++T Sbjct: 90 LGMQILRQEAPHLGYKPQFSILDAYDAGKIISDLLRTT 127 >gi|118497381|ref|YP_898431.1| UvrD/REP superfamily I DNA/RNA helicase [Francisella tularensis subsp. novicida U112] gi|195536071|ref|ZP_03079078.1| UvrD/REP helicase family protein [Francisella tularensis subsp. novicida FTE] gi|254372746|ref|ZP_04988235.1| ATP-dependent DNA helicase [Francisella tularensis subsp. novicida GA99-3549] gi|118423287|gb|ABK89677.1| UvrD/REP superfamily I DNA and RNA helicases [Francisella novicida U112] gi|151570473|gb|EDN36127.1| ATP-dependent DNA helicase [Francisella novicida GA99-3549] gi|194372548|gb|EDX27259.1| UvrD/REP helicase family protein [Francisella tularensis subsp. novicida FTE] Length = 671 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 38/146 (26%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89 V A AGSGKT ++++++ L+ +P ++L +T T AA EM RV + Sbjct: 17 ATPLLVLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERVKSRL--- 73 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 D K++ GL + T H+ +I+++ + Sbjct: 74 -----------------------DKEKSK-----------GLMISTFHSLGLSILKKHFI 99 Query: 150 EANITSHFAIADEEQSKKLIEEAKKS 175 E +F + D S LI + Sbjct: 100 ELGYKKNFTLFDSHDSLALIYDIAYD 125 >gi|56477159|ref|YP_158748.1| hypothetical protein ebA3053 [Aromatoleum aromaticum EbN1] gi|56313202|emb|CAI07847.1| similar to ATP-dependent DNA helicase,putative replication protein [Aromatoleum aromaticum EbN1] Length = 660 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 38/157 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 ++ + V A AGSGKT ++ ++ L+ A +P + +T T AA EM Sbjct: 6 NAPQRDAIHYLDGPSLVLAGAGSGKTRVITHKIAHLINACGLNPVNIAAITFTNKAAKEM 65 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ PGGL V T HA Sbjct: 66 QERVAGLMGGRV-------------------------------------PGGLTVCTFHA 88 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 I++Q + F+I D + +++ + + Sbjct: 89 LGVKIVRQEAKHCGLKPQFSILDASDTVQIVADITRD 125 >gi|302385714|ref|YP_003821536.1| UvrD/REP helicase [Clostridium saccharolyticum WM1] gi|302196342|gb|ADL03913.1| UvrD/REP helicase [Clostridium saccharolyticum WM1] Length = 614 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 61/182 (33%), Gaps = 46/182 (25%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80 +++ V A GSGKT + R+ L+ PS +L +T TKAAA EM Sbjct: 10 AQKEAILHHQGPMLVLAGPGSGKTFTITHRICHLIKEYGVDPSNILVITFTKAAAREMKE 69 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R ++ P G+ T HA Sbjct: 70 RFESLVDG--------------------------------------RPSGVSFGTFHAIF 91 Query: 141 EAIMQ-QFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEIS 199 I++ + +A +I +EQ + I+EA + D E + EI + Sbjct: 92 FRILKFAYRYDAG-----SIVRDEQKIRYIKEAMDKFQVEV-EDEAEFVTSILSEISSVK 145 Query: 200 ND 201 D Sbjct: 146 GD 147 >gi|326204932|ref|ZP_08194785.1| UvrD/REP helicase [Clostridium papyrosolvens DSM 2782] gi|325984981|gb|EGD45824.1| UvrD/REP helicase [Clostridium papyrosolvens DSM 2782] Length = 1049 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 66/173 (38%), Gaps = 31/173 (17%) Query: 28 SDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-----STLLCLTHTKAAAAEMSHRV 82 +D ++ V A AG+GKT+ +V R+ L P ++ +T T AA M R+ Sbjct: 340 ADSEKNTLVKAGAGTGKTYSMVSRIAYLCNNKNKPVISLADSIAMVTFTNEAANNMKRRL 399 Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 ++ + +L+ I +E ++V TIH F + Sbjct: 400 KQLFINYFNLTKNP-----------------------KYIKFIEEVEQMQVSTIHKFAKK 436 Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 I+Q E + F++ + S+ E+ + L + + +E + Sbjct: 437 IIQTAGFELGLGKSFSVTSSDFSR---EKIYEKYLDAYVKRKKDETPDFINSL 486 >gi|310286974|ref|YP_003938232.1| ATP-dependent DNA helicase, UvrD/REP helicase [Bifidobacterium bifidum S17] gi|309250910|gb|ADO52658.1| ATP-dependent DNA helicase, UvrD/REP helicase [Bifidobacterium bifidum S17] Length = 1400 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 29/152 (19%) Query: 18 SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + + + PT V A AGSGKT+ + +R++ L+ +L LT T+ AA+ Sbjct: 7 TDSPEQAKVVNAPTGDDVLVVAGAGSGKTYTMTRRIINLIAQGVPAERILGLTFTRKAAS 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV + A A + V T Sbjct: 67 ELLSRVSAAVLADGGDERFANRAFLKPE----------------------------VSTY 98 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 AF + I++Q+ L + + + +L Sbjct: 99 DAFFQTIVRQYGLLVGFDQNTQPLSQAGAIQL 130 >gi|290973343|ref|XP_002669408.1| predicted protein [Naegleria gruberi] gi|284082955|gb|EFC36664.1| predicted protein [Naegleria gruberi] Length = 330 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 36/154 (23%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRL-LLANAHPSTLLCLTHTKAAA 75 ++ + E + AS+ V + GSGKT + R+ L ++ P + +T T AA Sbjct: 206 LNSKQLEAVCASEHDC-VCVYSGPGSGKTKTITNRIAYLCIVKGIEPRNVFAMTFTNKAA 264 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R++ ++ + + + T Sbjct: 265 QEMKTRLVHLVKLYD------------------------------FQKRINAKDFSHIGT 294 Query: 136 IHAFCEAIMQ-QFPLE---ANITSHFAIADEEQS 165 HA C I++ + + F I D E+ Sbjct: 295 FHAVCANILRNEMHHLTRIVGLDQKFMIFDSEEQ 328 >gi|90019833|ref|YP_525660.1| ATP-dependent DNA helicase Rep [Saccharophagus degradans 2-40] gi|89949433|gb|ABD79448.1| ATP-dependent DNA helicase Rep [Saccharophagus degradans 2-40] Length = 672 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 55/159 (34%), Gaps = 38/159 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 + + ++ + V A AGSGKT ++ +++ ++ + +T T A Sbjct: 1 MTTLNPRQKEAVHYIDGPSLVLAGAGSGKTSVITRKIAYMIQECGIPARHIAAVTFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +++ + GL V Sbjct: 61 AREMKERVTKLVKGSA-------------------------------------ARGLTVS 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T H I+++ S F I D+E ++ LI+E Sbjct: 84 TFHNLGLNIIRREHKTLGFKSGFTIFDQEDARGLIKEIM 122 >gi|78045388|ref|YP_361638.1| UvrD/Rep-family ATP-dependent DNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78033892|emb|CAJ19891.1| UvrD/Rep-family ATP-dependent DNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 1103 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 56/154 (36%), Gaps = 38/154 (24%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 ++ T ++ A P R++ V A G+GKT L+ R+ LL A P+ LL LT + AA Sbjct: 198 LTPTDEQRDAARSPVRTSLVVAGPGTGKTATLLMRIEHLLANGAKPAELLVLTFSNRAAR 257 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R L + + V T Sbjct: 258 ELVDR--------------------------------------LAANGVPDAHEMWVGTF 279 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKLIE 170 HAF +++ + F +AD+ L+E Sbjct: 280 HAFGLEFLRKNHERFGLRPGFGVADKMAQIALLE 313 >gi|169634461|ref|YP_001708197.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter baumannii SDF] gi|169153253|emb|CAP02354.1| putative ATP-dependent DNA helicase (PcrA) [Acinetobacter baumannii] Length = 688 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 40/159 (25%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 LI++ ++Q A+ ++ V A AG GKT +V R L+ + + LT T+ A Sbjct: 35 LINELNAQQKKAATTMAQNCLVLAGAGCGKTKTIVARAAYLVDQGLPANQIQILTFTRRA 94 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+E+ RV + + A + GL+ Sbjct: 95 ASEIVARVEQHVGAQAK--------------------------------------GLRAS 116 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T H FC ++++ P +T F+I D + + + Sbjct: 117 TFHTFCMYLLRRNPQAFGLT-QFSIIDRDDQLLMFRLLR 154 >gi|224371114|ref|YP_002605278.1| PcrA1 [Desulfobacterium autotrophicum HRM2] gi|223693831|gb|ACN17114.1| PcrA1 [Desulfobacterium autotrophicum HRM2] Length = 619 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 51/153 (33%), Gaps = 37/153 (24%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSH 80 + +Q A V A AGSGKT L +++ L+ P+ +L +T T AA EM Sbjct: 5 EQQQTAVLHTGSPALVVAGAGSGKTRTLTAKIMHLIGQGFDPTRILAITFTNKAAQEMKS 64 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ ++ V+T H+ C Sbjct: 65 RLYKLSGLGYAKFP-------------------------------------WVRTYHSAC 87 Query: 141 EAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 I + E +S I Q KK++ E Sbjct: 88 LVIFKTHSHEIGYSSPIQICSIYQQKKIVTEIL 120 >gi|111115168|ref|YP_709786.1| DNA helicase [Borrelia afzelii PKo] gi|216263989|ref|ZP_03435983.1| DNA helicase [Borrelia afzelii ACA-1] gi|110890442|gb|ABH01610.1| DNA helicase [Borrelia afzelii PKo] gi|215980033|gb|EEC20855.1| DNA helicase [Borrelia afzelii ACA-1] Length = 698 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 61/154 (39%), Gaps = 42/154 (27%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80 E+++ + V A GSGKT +++ +++ L+ N +P+ +L LT T AA EM+ Sbjct: 15 QEKIVFNKSKNPMLVLAGPGSGKTRVIIAKIVYLIKHMNINPNEILALTFTNKAANEMND 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R+ +++ L +QT H+F Sbjct: 75 RINDLLKFDKK---------------------------------------LHIQTFHSFG 95 Query: 141 EAIMQQFP--LEANITSHFAIADEEQSKKLIEEA 172 +++ + + N S+F I D + +++ Sbjct: 96 AWLLRCYYKDFDKNYDSNFTIWDTNDVVRFVKQI 129 >gi|331245511|ref|XP_003335392.1| DNA helicase II [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309314382|gb|EFP90973.1| DNA helicase II [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 979 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 76/223 (34%), Gaps = 44/223 (19%) Query: 17 ISQTKSEQLLASDP--TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKA 73 ++ QL A S + A GSGKT +L R+ LL P +L+ +T T Sbjct: 10 LNSLNQNQLKAVQRPADGSLQILAGPGSGKTRVLTYRIAYLLRKCGISPPSLVAVTFTNK 69 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 +A EM HR+ +I L++E+ Sbjct: 70 SAKEMQHRLAALIGG-------SLASEVIL------------------------------ 92 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193 T H C +++ + + ++ I D +Q + + A S + + K Sbjct: 93 GTFHGMCVTFLRKHGSKIGLRPNWVICDRDQQLQYGKSALNDPQFSEQVQDQSIKPKTVV 152 Query: 194 EILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEK 236 E + + + +++ R A + L+R K+ Sbjct: 153 EAISKAKSQGYSP--EEML--RQAETSYQKLMAALYREKLFRS 191 >gi|148642118|ref|YP_001272631.1| DNA helicase II [Methanobrevibacter smithii ATCC 35061] gi|148551135|gb|ABQ86263.1| DNA helicase II [Methanobrevibacter smithii ATCC 35061] Length = 1505 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 35/130 (26%) Query: 21 KSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMS 79 E + D + + A GSGKT +L++RV LL P +LL +T TK AA E+ Sbjct: 460 DQEAAVMYDGKKPLLIEAGPGSGKTTVLIERVKYLLNNKGIDPESLLVITFTKKAANELK 519 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R+ E S L + +++ TIH F Sbjct: 520 TRLSEETDNISELDVQ----------------------------------KMQISTIHGF 545 Query: 140 CEAIMQQFPL 149 C I+++ Sbjct: 546 CAKILEKAGY 555 >gi|87124723|ref|ZP_01080571.1| similar to UvrD/REP helicase [Synechococcus sp. RS9917] gi|86167602|gb|EAQ68861.1| similar to UvrD/REP helicase [Synechococcus sp. RS9917] Length = 1214 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 21/168 (12%) Query: 35 WVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLS 93 + A+AG+GKT L VLRL+ + + LL +T T AAAAE+ R+ + Sbjct: 17 LLEASAGTGKTFALAHLVLRLITERDLDLNQLLVVTFTDAAAAELRDRIGRRLEQALQGL 76 Query: 94 DEILSAEITKIQGKKPNKSDMS---------------KARHL---LITILETPGGLKVQT 135 I + E + + + + R L L++ LE+ + T Sbjct: 77 LAIQTPEDSAAAQCGAAQQEADPVLRDWLARQGQEAGRCRELASRLLSALESLERADITT 136 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLD 183 IH FC +Q+ L++ A+ E S +L E +L Sbjct: 137 IHGFCRRTLQRQALQSGQAMDPAL--ESDSDRLCREVAHDYWQQQVLQ 182 >gi|304415298|ref|ZP_07395988.1| DNA helicase and single-stranded DNA-dependent ATPase [Candidatus Regiella insecticola LSR1] gi|304282853|gb|EFL91326.1| DNA helicase and single-stranded DNA-dependent ATPase [Candidatus Regiella insecticola LSR1] Length = 690 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 60/176 (34%), Gaps = 38/176 (21%) Query: 5 NSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPS 63 + + S+ + S+Q + V A AGSGKT +++ ++ L+ H Sbjct: 7 DPAESSSKMRNPRQLNVSQQQAVEFVSGPCLVLAGAGSGKTRVIINKIAYLIGHCGYHTR 66 Query: 64 TLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLIT 123 + +T T AA EM RV + + Sbjct: 67 HVAAVTFTNKAAREMKERVAQTLGNKETR------------------------------- 95 Query: 124 ILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 GL + T H I+++ + + ++F++ D L++E + + Sbjct: 96 ------GLMISTFHTLGLEIIKREYVALGMKANFSLFDAYDQMALLKELTQQWIKE 145 >gi|291551268|emb|CBL27530.1| Superfamily I DNA and RNA helicases [Ruminococcus torques L2-14] Length = 954 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 62/198 (31%), Gaps = 56/198 (28%) Query: 13 TIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHT 71 + + ++++ S ++A G+GKT LV+R + L+ P ++ T T Sbjct: 1 MFNYGNANEAQKEAISATDGLVLITAGPGTGKTFTLVKRAVYLIQECGIKPEQIMMATFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + AA E+ R+ + I + Sbjct: 61 EKAAKELITRITNELAE---------------------------------RNISVNVNEM 87 Query: 132 KVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKA 191 + T H+ C I+++ + ++ + D K L+ Sbjct: 88 YIGTFHSLCLRIIKENLEFTRLKRNYRLLDTFDQKYLV---------------------- 125 Query: 192 FYEILEISNDEDIETLIS 209 F N E I+ L+S Sbjct: 126 FRNFHRFKNIEGIDELLS 143 >gi|283457707|ref|YP_003362293.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18] gi|283133708|dbj|BAI64473.1| superfamily I DNA and RNA helicase [Rothia mucilaginosa DY-18] Length = 1594 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 26/186 (13%) Query: 4 HNSFQEHSETI---DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN- 59 + S + +E + D T + + V A AGSGKT +V RV+ L+ Sbjct: 63 YRSALDIAEMLNGADGKKPTPEQVRMIEAGPAPTLVIAGAGSGKTATMVDRVIWLVDNGF 122 Query: 60 AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARH 119 P +L +T T+ AA E+ R+ + S E + P Sbjct: 123 VRPEEVLGVTFTRKAATELRSRMRAGLNTLRRSRRVAPSDEELREGIADP---------- 172 Query: 120 LLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 V T H++ +++++ L + + + Q +L + + Sbjct: 173 ------------TVLTYHSYANNLVKEYGLRLGVEQDAQMLGDAQKWQLAAQIVQYWEGE 220 Query: 180 IMLDNN 185 + LD + Sbjct: 221 LPLDKD 226 >gi|226320437|ref|ZP_03796004.1| DNA helicase [Borrelia burgdorferi 29805] gi|226234190|gb|EEH32904.1| DNA helicase [Borrelia burgdorferi 29805] Length = 698 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 70/190 (36%), Gaps = 50/190 (26%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T E+++ S V A GSGKT +++ +++ L+ N P+ +L LT T AA E Sbjct: 12 NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKYMNIDPNEILALTFTNKAANE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M++R+ +++ L +QT H Sbjct: 72 MNNRINDLLKFDKK---------------------------------------LHIQTFH 92 Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187 +F +++ + N S+F I D K ++ E K A I+ D Sbjct: 93 SFGSWLLRVYYKDFNENYDSNFTIWDTNDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 152 Query: 188 LKKAFYEILE 197 + F E E Sbjct: 153 FLEKFIEFTE 162 >gi|71278734|ref|YP_267066.1| ATP-dependent DNA helicase Rep [Colwellia psychrerythraea 34H] gi|71144474|gb|AAZ24947.1| ATP-dependent DNA helicase Rep [Colwellia psychrerythraea 34H] Length = 677 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 67/183 (36%), Gaps = 47/183 (25%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAW 89 + V A AGSGKT ++ Q++ L+ + + +T T AA EM R+ +++ Sbjct: 15 SGPCLVLAGAGSGKTGVICQKIAYLIQKCDYKARNIAAVTFTNKAAREMKERIQKMLGR- 73 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 D+++ GL V T H+ I+++ Sbjct: 74 -----------------------DLTR-------------GLTVSTFHSLGLDIVRREIK 97 Query: 150 EANITSHFAIADEEQSKKLIEEAK-------KSTLASIMLDNNEELKKAFY--EILEISN 200 F + D++ S L++E K L+ + + F + L+ ++ Sbjct: 98 ILGYKPGFTLFDDQDSLALLKELTIDELDGDKDLLSKLQSKISNWKNDLFLPDDALKSAS 157 Query: 201 DED 203 D D Sbjct: 158 DAD 160 >gi|239626681|ref|ZP_04669712.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516827|gb|EEQ56693.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1121 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 45/163 (27%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPST 64 + Q ++ +D ++ + + + + P V A G+GKT LV R+ L+ P+ Sbjct: 510 ASQTGADVLDGLNPNQRQAVGSISPVT--AVIAGPGTGKTKTLVSRLSYLIGERGVKPAE 567 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 + +T T AA E+ R+ + L Sbjct: 568 ITAVTFTNKAAEELRQRIRRQLPGKRSL-------------------------------- 595 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKK 167 ++V T H+ C ++Q N + ++ADE Q ++ Sbjct: 596 ----NQMQVGTFHSLCYRMLQ------NQGTGLSLADEGQQQE 628 >gi|157156759|ref|YP_001464364.1| UvrD family helicase [Escherichia coli E24377A] gi|157078789|gb|ABV18497.1| helicase, UvrD family [Escherichia coli E24377A] Length = 630 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 50/226 (22%) Query: 17 ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAA 75 ++ + +++ + P + V A+AGSGKT +L +RV R +L N ++ LT T AA Sbjct: 1 MNLSNAQRQIVEAPMDIAIQVLASAGSGKTRVLTERV-RYILNNTKRDAVIALTFTNKAA 59 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EMS R+ + P++ + + T Sbjct: 60 EEMSSRLSDF----------------------DPDE-----------------DRVWIAT 80 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 IH+ + I++++ + S I D ++ + E +L +D +E L + + Sbjct: 81 IHSVAQRILEKYGHTIGLPSDLYIYDRDKDRM---EVFMQSLREDGIDIDEYL--SIADS 135 Query: 196 LEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWSI 241 E+ N E DI S L F S L+ + ++W I Sbjct: 136 KELKNRERNLQSYMDIFSKIKRELLTEFEVSELYP----DNNIWKI 177 >gi|83649062|ref|YP_437497.1| ATP-dependent DNA helicase Rep [Hahella chejuensis KCTC 2396] gi|83637105|gb|ABC33072.1| ATP-dependent DNA helicase Rep [Hahella chejuensis KCTC 2396] Length = 672 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 61/187 (32%), Gaps = 43/187 (22%) Query: 17 ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 +SQ Q A V A AGSGKT ++ +++ L+ + +T T A Sbjct: 1 MSQLNPRQREAVKYIDGPLLVLAGAGSGKTSVITRKIAYLIEECGLKAKHIAAVTFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV +++ + GL V Sbjct: 61 AREMKERVSALVSGPA-------------------------------------ARGLTVS 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T H I++ + F+I D++ K +I K L + E++ + Sbjct: 84 TFHNLGMNIIRLEHKAVGLKPGFSIFDQQDCKAII----KDLLFKEFDEAEEDVDQLQAH 139 Query: 195 ILEISND 201 ND Sbjct: 140 FSNWKND 146 >gi|224282512|ref|ZP_03645834.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171] gi|313139664|ref|ZP_07801857.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171] gi|313132174|gb|EFR49791.1| ATP-dependent DNA helicase [Bifidobacterium bifidum NCIMB 41171] Length = 1401 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 29/152 (19%) Query: 18 SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + + + PT V A AGSGKT+ + +R++ L+ +L LT T+ AA+ Sbjct: 7 TDSPEQAKVVNAPTGDDVLVVAGAGSGKTYTMTRRIINLIAQGVPAERILGLTFTRKAAS 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV + A A + V T Sbjct: 67 ELLSRVSAAVLADGGDERFANRAFLKPE----------------------------VSTY 98 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 AF + I++Q+ L + + + +L Sbjct: 99 DAFFQTIVRQYGLLVGFDQNTQPLSQAGAIQL 130 >gi|220903357|ref|YP_002478669.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867656|gb|ACL47991.1| UvrD/REP helicase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 768 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 72/217 (33%), Gaps = 47/217 (21%) Query: 13 TIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 ID Q A+ V A AGSGKT +V R+ L P ++L LT T Sbjct: 1 MIDYAQALNEAQYEAATSGDGPVLVVAGAGSGKTRTIVYRLAWLAENGVSPESMLLLTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + AA EM HR ++ G+ Sbjct: 61 RKAAQEMLHRAGLLLD--------------------------------------HGLSGV 82 Query: 132 KVQTIHAFCEAIMQQF--PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELK 189 + T HAF ++++++ A+ F + D I A K + L ++ Sbjct: 83 QGGTFHAFAFSVLRRWKPAWLADRP--FTVMDAAD----ITSAVKHCRDDLKLGKGDKSF 136 Query: 190 KAFYEILEISNDEDIETLISDIISNRTALKLIFFFFS 226 ++ + + + L D + R A L+ S Sbjct: 137 PKTQTVVGLLSKARNKELPLDEVLRREAFHLLPHAES 173 >gi|46205528|ref|ZP_00048428.2| COG0210: Superfamily I DNA and RNA helicases [Magnetospirillum magnetotacticum MS-1] Length = 239 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 51/154 (33%), Gaps = 38/154 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMS 79 S++ A + A G+GKT LV R+ RLL A S +L LT + AA E+ Sbjct: 91 DDSQRAAAFHEGTPFLLQAGPGTGKTRTLVSRIERLLDRGATASEILVLTFSNKAAGELV 150 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R L + E + T H F Sbjct: 151 ER--------------------------------------LTARLPEAAAAAWIGTFHGF 172 Query: 140 CEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 +++QF + + D+ + ++E+ Sbjct: 173 GLDVLRQFHDRDGLPDDPRLMDKADAVGMLEDLV 206 >gi|282890920|ref|ZP_06299436.1| hypothetical protein pah_c030o020 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499204|gb|EFB41507.1| hypothetical protein pah_c030o020 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 1167 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 14/131 (10%) Query: 35 WVSANAGSGKTHILVQRVLRLLLAN--AHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHL 92 + A+AG+GKT + ++RLLL N +L +T T+AA ++ R+ E I Sbjct: 16 VLEASAGTGKTFSIENIIVRLLLENPPVTIQEILVVTFTRAATHDLKVRIRENIEKALSF 75 Query: 93 SDEIL----------SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142 +L + IQG+ P + + + + L L ++ TIH+FC Sbjct: 76 LQGLLLSPHYCYQEAPDYLKAIQGRDPEE--IKEIKKRLEHALFEYDQAQIFTIHSFCLR 133 Query: 143 IMQQFPLEANI 153 ++ E ++ Sbjct: 134 TLKTHFFEGDL 144 >gi|184156771|ref|YP_001845110.1| superfamily I DNA/RNA helicase [Acinetobacter baumannii ACICU] gi|294841925|ref|ZP_06786608.1| putative ATP-dependent DNA helicase [Acinetobacter sp. 6014059] gi|183208365|gb|ACC55763.1| Superfamily I DNA and RNA helicase [Acinetobacter baumannii ACICU] gi|322506663|gb|ADX02117.1| ATP-dependent DNA helicase [Acinetobacter baumannii 1656-2] gi|323516538|gb|ADX90919.1| superfamily I DNA/RNA helicase [Acinetobacter baumannii TCDC-AB0715] Length = 659 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 40/159 (25%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 LI++ ++Q A+ ++ V A AG GKT +V R L+ + + LT T+ A Sbjct: 6 LINELNAQQKKAATTMAQNCLVLAGAGCGKTKTIVARAAYLIDQGLPANQIQILTFTRRA 65 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A+E+ RV + + A + GL+ Sbjct: 66 ASEIVARVEQHVGAQAK--------------------------------------GLRAS 87 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T H FC ++++ P +T F+I D + + + Sbjct: 88 TFHTFCMYLLRRNPQAFGLT-QFSIIDRDDQLLMFRLLR 125 >gi|190572176|ref|YP_001970021.1| putative ATP-dependent DNA helicase Rep [Stenotrophomonas maltophilia K279a] gi|190010098|emb|CAQ43706.1| putative ATP-dependent DNA helicase Rep [Stenotrophomonas maltophilia K279a] Length = 658 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 66/205 (32%), Gaps = 48/205 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74 + + V A AGSGKT ++V+++ L+ + +P + +T T + Sbjct: 1 MHGLNPPQAAAVLHIEGPLLVLAGAGSGKTRVIVEKIAHLIGSGRYPARRIAAITFTNKS 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV + + + + + Sbjct: 61 AKEMRERVAKRLRE-------------------------------------QDADEVTIC 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HA +Q + F+I D + + I++ +M + + Sbjct: 84 TFHALGLKFLQIEHAAVGLKRGFSIFDADDAAAQIKD--------LMYGAKPDDIEDMKN 135 Query: 195 ILEISNDEDI--ETLISDIISNRTA 217 ++ + + + E ++ SNR Sbjct: 136 LVSRAKNAGLSPEQAMAAARSNREK 160 >gi|187918214|ref|YP_001883777.1| DNA helicase II [Borrelia hermsii DAH] gi|119861062|gb|AAX16857.1| DNA helicase II [Borrelia hermsii DAH] Length = 697 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 54/154 (35%), Gaps = 42/154 (27%) Query: 22 SEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSH 80 +Q++ D V A GSGKT ++ ++ L+ P +L LT T AA EM+ Sbjct: 15 QKQIVLDDTKNPILVLAGPGSGKTRVITAKITHLIKEMKLRPEEILALTFTNKAANEMNF 74 Query: 81 RVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFC 140 R L + L +QT H+F Sbjct: 75 R---------------------------------------LNYLFNLNKALHIQTFHSFG 95 Query: 141 EAIMQQFP--LEANITSHFAIADEEQSKKLIEEA 172 +++ + + N S+F I D + +++ Sbjct: 96 AWLLRLYFKEFDKNYDSNFTIWDTNDVVRFVKQI 129 >gi|120553399|ref|YP_957750.1| ATP-dependent DNA helicase Rep [Marinobacter aquaeolei VT8] gi|120323248|gb|ABM17563.1| ATP-dependent DNA helicase Rep [Marinobacter aquaeolei VT8] Length = 672 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 67/188 (35%), Gaps = 43/188 (22%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTK 72 ++ ++ + E + +D V A AGSGKT ++ +++ L+ P + +T T Sbjct: 1 MNKLNPRQHEAVRYAD--GPLLVLAGAGSGKTSVITRKIAYLIEELGIPGRHIAAVTFTN 58 Query: 73 AAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLK 132 AA EM RV I+ D K R L+ Sbjct: 59 KAAREMKERVGRIV--------------------------DRGKTRGLI----------- 81 Query: 133 VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAF 192 V T H ++++ F+I D E +K L+++ + + +EL Sbjct: 82 VSTFHNLGLNMIREEHTHLGYHPGFSIFDAEDAKALLQDLM---MREASAEAGDELNDVQ 138 Query: 193 YEILEISN 200 I N Sbjct: 139 MTISSWKN 146 >gi|308377259|ref|ZP_07441669.2| UvrD/REP helicase subfamily [Mycobacterium tuberculosis SUMu008] gi|308348310|gb|EFP37161.1| UvrD/REP helicase subfamily [Mycobacterium tuberculosis SUMu008] Length = 695 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 28/161 (17%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E + + L T + + + P V A AG+GKT + RV+ L+ A P +L Sbjct: 57 ELACALGLFPPTAEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANGYAEPGQVLG 116 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 LT T+ AA ++ RV + + + Sbjct: 117 LTFTRKAAGQLLRRVRSRLARLAGIGLGCGDPAACAPV---------------------- 154 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 V T HAF ++++ + L + + E + +L Sbjct: 155 -----VSTYHAFAGSLLRDYGLLLPLEPDTRLLSETELWQL 190 >gi|307546980|ref|YP_003899459.1| ATP-dependent DNA helicase Rep [Halomonas elongata DSM 2581] gi|307219004|emb|CBV44274.1| ATP-dependent DNA helicase Rep [Halomonas elongata DSM 2581] Length = 685 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 40/159 (25%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 ++ + E + A D V A AGSGKT ++ ++ L+ + +T T AA Sbjct: 12 LNPRQREAVKAID--GPCLVLAGAGSGKTSVITTKIAYLVQECGMSARRIAAVTFTNKAA 69 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV +++ GL+V T Sbjct: 70 REMKERVGQMLKGRE-------------------------------------AHGLRVST 92 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 H I++ F++ D E +K L+ + Sbjct: 93 FHTLGLNIIRGELKALGYKPGFSLFDPEDAKALLRDLMN 131 >gi|311063850|ref|YP_003970575.1| ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010] gi|310866169|gb|ADP35538.1| ATP-dependent DNA helicase [Bifidobacterium bifidum PRL2010] Length = 1400 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 29/152 (19%) Query: 18 SQTKSEQLLASDPTRS-AWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAA 76 + + + + + PT V A AGSGKT+ + +R++ L+ +L LT T+ AA+ Sbjct: 7 TDSPEQAKVVNAPTGDDVLVVAGAGSGKTYTMTRRIINLIAQGVPAERILGLTFTRKAAS 66 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ RV + A A + V T Sbjct: 67 ELLSRVSAAVLADGGDERFANRAFLKPE----------------------------VSTY 98 Query: 137 HAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 AF + I++Q+ L + + + +L Sbjct: 99 DAFFQTIVRQYGLLVGFDQNTQPLSQAGAIQL 130 >gi|251773028|gb|EES53584.1| putative ATP-dependent DNA helicase, UvrD/REP family [Leptospirillum ferrodiazotrophum] Length = 796 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 40/157 (25%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEM 78 ++L + V A AGSGKT ++++R+L L+ + + T T+ AA E+ Sbjct: 22 NPEQRLAVTHEEGPLLVLAPAGSGKTRVVIERLLFLIERSGRGGESFFVATFTRKAAREL 81 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 R+ + D L V T H+ Sbjct: 82 VERISHRL------PDARLPY---------------------------------VGTFHS 102 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKS 175 ++++ A + F ++D K L+ E + Sbjct: 103 LSARLLRRLADRAGLPPDFTVSDAGDQKALVREIMRR 139 >gi|89091856|ref|ZP_01164811.1| ATP-dependent DNA helicase Rep [Oceanospirillum sp. MED92] gi|89083591|gb|EAR62808.1| ATP-dependent DNA helicase Rep [Oceanospirillum sp. MED92] Length = 669 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 39/159 (24%) Query: 17 ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 +S+ Q A + + V A AGSGKT ++ +++ L+ + +T T A Sbjct: 1 MSRLNPRQKEAVEYISGPLLVLAGAGSGKTSVITRKIAYLINQCGIEARNIAAVTFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 + EM RV ++ + GL V Sbjct: 61 SREMKERVTSLLEG-------------------------------------KNAKGLTVA 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 T H I+++ F+I D++ +K L+++ Sbjct: 84 TFHNLGLTIIKREYKTLGFKPGFSIFDDQDTKALLKDLM 122 >gi|304309876|ref|YP_003809474.1| ATP-dependent DNA helicase participating in chromosome replication [gamma proteobacterium HdN1] gi|301795609|emb|CBL43808.1| ATP-dependent DNA helicase participating in chromosome replication [gamma proteobacterium HdN1] Length = 668 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 62/171 (36%), Gaps = 38/171 (22%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 + +Q V A AGSGKT ++ +++ L+ + ++ +T T A Sbjct: 1 MKDLNPRQQEAVRYIDGPLLVLAGAGSGKTSVITRKIAHLVQKCGIPANRIVAVTFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 + EM RV +I+ ++AR GL V Sbjct: 61 SREMKERVGHLISG--------------------------AEAR-----------GLTVS 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNN 185 T H I+++ + + F+I D++ S+ L+ E A D + Sbjct: 84 TFHNLGLNILRKEHKSVGLKNGFSIFDDQDSRSLLTELSHKETAVAGEDVD 134 >gi|15594689|ref|NP_212478.1| DNA helicase (uvrD) [Borrelia burgdorferi B31] gi|2688234|gb|AAC66713.1| DNA helicase (uvrD) [Borrelia burgdorferi B31] Length = 699 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 50/190 (26%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T E+++ S V A GSGKT +++ +++ L+ N P+ +L LT T AA E Sbjct: 13 NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKYMNIDPNEILALTFTNKAANE 72 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ R+ +++ L +QT H Sbjct: 73 MNDRINDLLKFDKK---------------------------------------LHIQTFH 93 Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187 +F +++ + N S+F I D K ++ E K A I+ D Sbjct: 94 SFGSWLLRVYYKDFNENYDSNFTIWDTNDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 153 Query: 188 LKKAFYEILE 197 + F + E Sbjct: 154 FLEKFIQFTE 163 >gi|78356631|ref|YP_388080.1| ATP-dependent DNA helicase UvrD [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219036|gb|ABB38385.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 1067 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 68/186 (36%), Gaps = 27/186 (14%) Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPS----------------TLLCLTHTKAAAAEMS 79 + A+AGSGKT+ L L L A + S +L +T T AA EM Sbjct: 5 IKASAGSGKTYRLTGEFLDRLRAASEESSAACALAPAGAAYCWPEILAVTFTNKAATEMQ 64 Query: 80 HRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAF 139 R++ + + A G AR + T+L L V+TI + Sbjct: 65 ERIIRTLKERALGMGASGPAADWPASG----------ARRWVNTMLRRYSSLNVRTIDSL 114 Query: 140 CEAIMQQFPLEANITSHFA-IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEI 198 +++ LE + F + DEE+ + E S ++L A +L Sbjct: 115 LHMLVRLCALELGLPPDFEPVFDEEEIFTPLYERMLEQARSGSHQLRQQLVDASESLLYH 174 Query: 199 SNDEDI 204 ++ + Sbjct: 175 ADMQGF 180 >gi|332084974|gb|EGI90156.1| ATP-dependent DNA helicase Rep [Shigella dysenteriae 155-74] Length = 654 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 43/184 (23%) Query: 37 SANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95 A AGSGKT ++ ++ L+ + +T T AA EM RV + + Sbjct: 2 LAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR------- 54 Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155 +AR GL + T H I+++ + + Sbjct: 55 -------------------KEAR-----------GLMISTFHTLGLDIIKREYAALGMKA 84 Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISND-EDIETLISDIISN 214 +F++ D+ L++E + + D+ L++ I ND + + I Sbjct: 85 NFSLFDDTDQLALLKELTEGLIE----DDKVLLQQLISTISNWKNDLKTPSQAAASAIGE 140 Query: 215 RTAL 218 R + Sbjct: 141 RDRI 144 >gi|269977489|ref|ZP_06184461.1| UvrD/REP helicase [Mobiluncus mulieris 28-1] gi|269934405|gb|EEZ90967.1| UvrD/REP helicase [Mobiluncus mulieris 28-1] Length = 1213 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 81/206 (39%), Gaps = 23/206 (11%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA-HPSTLLCLTHTKAAAAE 77 T+ ++ + P V A AGSGKT + R++ ++ A P ++L LT TK A AE Sbjct: 23 PTEEQEQVIKAPLEPLLVVAGAGSGKTETIANRLVYWVVNGAISPQSVLGLTFTKKATAE 82 Query: 78 MSHRVLEIITAWSHLSDEILSA------EITKIQGKKPNKSDMSKARHLLITILETPGGL 131 M R + + ++ +++ E+ + D SK + ++ L Sbjct: 83 MGQRFALRLDNLAQNLEKFVASPSSFEVEMCRQLKGDWQWRDDSKIHGFIRSLTAGLHTL 142 Query: 132 K--------------VQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL 177 + V T A ++ +F + A S + + +++ + ++ + Sbjct: 143 QESGMTSRILRSGVEVSTYDALASKVLTEFGVLAGRDSGYQTITDGTRFQIMSQILETWV 202 Query: 178 ASIMLDNNE--ELKKAFYEILEISND 201 +++ E + +L ++ D Sbjct: 203 SNLSYREEEGASVGNFIEGLLHLAGD 228 >gi|256374998|ref|YP_003098658.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827] gi|255919301|gb|ACU34812.1| UvrD/REP helicase [Actinosynnema mirum DSM 43827] Length = 1349 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 67/181 (37%), Gaps = 19/181 (10%) Query: 4 HNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHP 62 H S + ++ + L T + + + P A V A AG+GKT + RV+ L+ P Sbjct: 18 HASPADIADALGLHPPTPEQAAVIASPAAPALVVAGAGAGKTETMAARVVYLVANGVVTP 77 Query: 63 STLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLI 122 +L LT T+ AA ++ RV + + + + S +A L Sbjct: 78 DRVLGLTFTRKAARQLGERVRGRLRRLAGSP-----------LLDELDPSGRRRAAVLTT 126 Query: 123 TILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIML 182 + V T HA+ ++ + L + + E + +L + + Sbjct: 127 EPV-------VLTYHAYAGRLVGEHGLRLPVEPGVRLLTETAAWQLAHRVVSAWTQDLDT 179 Query: 183 D 183 D Sbjct: 180 D 180 >gi|315506913|ref|YP_004085800.1| uvrd/rep helicase [Micromonospora sp. L5] gi|315413532|gb|ADU11649.1| UvrD/REP helicase [Micromonospora sp. L5] Length = 1061 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 39/138 (28%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +++ AS P + A G+GKT L R+ L N P L +T T+ AA E+ HR Sbjct: 517 QRVAASAPGGPLLIVAGPGTGKTRTLTHRIAYLCAELNVFPDQCLAITFTRRAAEELRHR 576 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + ++ + + V T H+ Sbjct: 577 LDGLLGPVAE--------------------------------------DVTVGTFHSLGL 598 Query: 142 AIMQQFPLEANITSHFAI 159 ++++ A + + F I Sbjct: 599 TVLRENATAAGLPADFRI 616 >gi|78358610|ref|YP_390059.1| ATP-dependent DNA helicase UvrD [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78221015|gb|ABB40364.1| ATP-dependent DNA helicase, UvrD/REP family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 719 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 47/215 (21%) Query: 13 TIDLISQTKSEQ-LLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHT 71 ID + + Q A+ V A AGSGKT +V R+ ++ S +L LT T Sbjct: 1 MIDYKKELNAAQYEAATTLEGPMLVIAGAGSGKTRTVVYRLANMVQQGIAASNILLLTFT 60 Query: 72 KAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL 131 + AA EM HR A LL GG+ Sbjct: 61 RKAAQEMQHR-----------------------------------AAQLLGQSAGMVGGV 85 Query: 132 KVQTIHAFCEAIMQQF---PLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEEL 188 + T HAF +I++ E ++ ++ D + ++ K ++ L + Sbjct: 86 QGGTFHAFAYSILRMHKPQGYEGDL----SVMDSADAAGALKHCKD----TLGLGKGDRS 137 Query: 189 KKAFYEILEISNDEDIETLISDIISNRTALKLIFF 223 ++ + + + L + + R A L + Sbjct: 138 FPKTQTVMGLLSKARNKELTVEDVLRREAFHLASY 172 >gi|296271994|ref|YP_003654625.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299] gi|296096169|gb|ADG92119.1| UvrD/REP helicase [Arcobacter nitrofigilis DSM 7299] Length = 684 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 57/163 (34%), Gaps = 37/163 (22%) Query: 14 IDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKA 73 I L +S+Q A S + A AGSGKT + R+ L+ P+++L LT T Sbjct: 4 IFLSGLNESQQKAAKHIDGSLLILAGAGSGKTKTITTRLAYLISIGIDPTSILTLTFTNK 63 Query: 74 AAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKV 133 AA EM R +I + + Sbjct: 64 AATEMRERAYAMIGSNMSTPPIL------------------------------------- 86 Query: 134 QTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 T H F ++ + E ++F I D + K+++ +K Sbjct: 87 CTFHKFGLLFLKFYMSELKRKNNFIIIDTDDKKRILRTIEKDI 129 >gi|288921364|ref|ZP_06415644.1| UvrD/REP helicase [Frankia sp. EUN1f] gi|288347216|gb|EFC81513.1| UvrD/REP helicase [Frankia sp. EUN1f] Length = 1138 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 13/166 (7%) Query: 12 ETIDLIS--QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCL 68 + DL+ T + A+ P A V A AGSGKT ++ RV+ L+ P +L L Sbjct: 37 DLRDLLGVPYTDEQLAAATAPLEPAVVIAGAGSGKTSVMAARVVWLVATRQVEPGRVLGL 96 Query: 69 THTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETP 128 T T AAAE++ RV + + + G P S + Sbjct: 97 TFTNKAAAELAGRVRLALRRAAEAGRGPGEGQGQGRPGDGPGPGAGSGS----------G 146 Query: 129 GGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 + T HA+ ++ + L + + +L + Sbjct: 147 DEPTISTYHAYAGRLVGEHALRLGLEPDTRMLVAAARYQLAARVVR 192 >gi|309810384|ref|ZP_07704218.1| UvrD/REP helicase [Dermacoccus sp. Ellin185] gi|308435624|gb|EFP59422.1| UvrD/REP helicase [Dermacoccus sp. Ellin185] Length = 1176 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 21/169 (12%) Query: 6 SFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPST 64 S ++ ++ T + + P V A AGSGKT + RV+ L+ P Sbjct: 28 SADAIADALERYHHTPEQVAVIEAPLEPLLVVAGAGSGKTDTMASRVVWLVANGLVRPQE 87 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L LT T+ AA E++ RV + + P+ D + ++ Sbjct: 88 ILGLTFTRKAAGELAERVNQRLRMLEASG-----------LWSPPDDPDGT------PSL 130 Query: 125 LETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 E+P + T +A+ I+ + L I + E + + E Sbjct: 131 GESP---TISTYNAYAGRIVGEHGLRLGIEPDARMLSEAAAWQFAHEVA 176 >gi|254672842|emb|CBA07038.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis alpha275] Length = 1204 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 24/159 (15%) Query: 35 WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86 + A+AG+GKT+ + RL+ L + +L +T TKAA AE+ R+ + Sbjct: 20 LIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVL 79 Query: 87 --TAWSHLSDEILSAEITK--------------IQGKKPNKSDMSKARHLLITILETPGG 130 + L D+ LS I + + K ++ L + Sbjct: 80 ESKEIAKLGDDTLSDGIAAYCAEHHKGDTFLPALLKQALQKESRTRLIVRLKAAIGQFDN 139 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + LI Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178 >gi|326383310|ref|ZP_08204998.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395] gi|326198060|gb|EGD55246.1| UvrD/REP helicase [Gordonia neofelifaecis NRRL B-59395] Length = 1117 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 19/163 (11%) Query: 7 FQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTL 65 + + + L T + + P V A AG+GKT + RV+ L+ P + Sbjct: 9 ARSLASALGLPQPTPEQIEVIEAPMEPMLVVAGAGAGKTETMASRVVWLVANRLVGPEEI 68 Query: 66 LCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITIL 125 L LT T+ AA+E++ R+ ++ + + P S+ R Sbjct: 69 LGLTFTRKAASELAARIRRRLSMLAGSP---------ALLEWDPGGELASRLRS------ 113 Query: 126 ETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKL 168 +V T HA+ ++ + L + + E + +L Sbjct: 114 ---ADAEVSTYHAYAGRLIADYGLLLPVEPTATLLSETELWQL 153 >gi|309390072|gb|ADO77952.1| UvrD/REP helicase [Halanaerobium praevalens DSM 2228] Length = 677 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 60/172 (34%), Gaps = 39/172 (22%) Query: 16 LISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAA 74 L++ +Q +A+ T V A AGSGKT L R L+ +L +T T A Sbjct: 4 LLNDLNPKQKIAAQTLTGPVLVLAGAGSGKTRTLTYRTANLIQNGVSHQNILTVTFTNRA 63 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A +M ++ ++I + E + + Sbjct: 64 ADDMKAKIGKLIGS-------------------------------------EIIDEMNLG 86 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST-LASIMLDNN 185 T H+ C I+++ + N I D + S ++E+ L + D Sbjct: 87 TFHSICLKILRENLNKINRAEGCLIYDTKDSLAIVEDIIFDFGLEATEYDPK 138 >gi|261856567|ref|YP_003263850.1| exodeoxyribonuclease V subunit beta [Halothiobacillus neapolitanus c2] gi|261837036|gb|ACX96803.1| exodeoxyribonuclease V, beta subunit [Halothiobacillus neapolitanus c2] Length = 1259 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 12/131 (9%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----PSTLLCLTHTKAAAAEMSHRVLEII 86 S + A+AG+GKT + +RL+L + P +L T T AAA E+ R+ + Sbjct: 20 AGSRLIEASAGTGKTFTIALLYVRLVLGHGTEPLMPPQILVTTFTDAAADELRDRIRARL 79 Query: 87 --------TAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 A S L + + ++ P + A L + TIH Sbjct: 80 FEAYRIFSEAGSELDPIAVDPYLLDLRAAFPTSEERLAAARRLEMAANWMDEAAIFTIHG 139 Query: 139 FCEAIMQQFPL 149 +C+ ++ + Sbjct: 140 WCQRMLNEHAF 150 >gi|296114709|ref|ZP_06833360.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769] gi|295978743|gb|EFG85470.1| putative DNA helicase II [Gluconacetobacter hansenii ATCC 23769] Length = 166 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 48/143 (33%), Gaps = 39/143 (27%) Query: 15 DLISQTKSEQLLASDPTR----------SAWVSANAGSGKTHILVQRVLRLLLANAHPST 64 D +S+ Q A V A AGSGKT+ L RV L+ + A P Sbjct: 13 DYLSRLNEAQRQAVTHGTGVSAGGADSSPLLVIAGAGSGKTNTLAHRVAHLIASGADPRR 72 Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITI 124 +L LT ++ A+ EM+ RV I L+ + Sbjct: 73 ILLLTFSRRASVEMTRRVERICKTVLGDKAGPLADAL----------------------- 109 Query: 125 LETPGGLKVQTIHAFCEAIMQQF 147 T H+ +++++ Sbjct: 110 ------AWAGTFHSIGARLLREY 126 >gi|221069391|ref|ZP_03545496.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni KF-1] gi|220714414|gb|EED69782.1| exodeoxyribonuclease V, beta subunit [Comamonas testosteroni KF-1] Length = 1270 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 73/194 (37%), Gaps = 21/194 (10%) Query: 32 RSAWVSANAGSGKTHILVQRVLRLLLANAH---------PSTLLCLTHTKAAAAEMSHRV 82 S + A+AG+GKT + LRL+L + P +L +T T+AA E+S R+ Sbjct: 24 GSRLIEASAGTGKTWTIAALYLRLVLGHGAENGFARALMPPDILVMTFTRAATRELSDRI 83 Query: 83 LEIITAW-----SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 + + + + ++ ++ A L + + TI Sbjct: 84 RDRLIEAVQCFRGEAEPAAHDSFLRDLRDAYAEGTERDTAAWRLDMAAQCMDDAAIHTID 143 Query: 138 AFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE 197 A+C+ ++++ ++ + F E + EA + + E+ + + Sbjct: 144 AWCQRMLREHAFDSG--NLFDETLEADESQRQTEAAQDYWRQQCYPLSGEVLETALHVW- 200 Query: 198 ISNDEDIETLISDI 211 D+ L+ D+ Sbjct: 201 ----PDVHALVKDM 210 >gi|223888779|ref|ZP_03623370.1| DNA helicase [Borrelia burgdorferi 64b] gi|223885595|gb|EEF56694.1| DNA helicase [Borrelia burgdorferi 64b] Length = 698 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 50/190 (26%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T E+++ S V A GSGKT +++ +++ L+ N P+ +L LT T AA E Sbjct: 12 NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKYMNIDPNEILALTFTNKAANE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ R+ +++ L +QT H Sbjct: 72 MNDRINDLLKFDKK---------------------------------------LHIQTFH 92 Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187 +F +++ + N S+F I D K ++ E K A I+ D Sbjct: 93 SFGSWLLRVYYKDFNENYDSNFTIWDTNDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 152 Query: 188 LKKAFYEILE 197 + F + E Sbjct: 153 FLEKFIQFTE 162 >gi|196018414|ref|XP_002118799.1| hypothetical protein TRIADDRAFT_62806 [Trichoplax adhaerens] gi|190578180|gb|EDV18715.1| hypothetical protein TRIADDRAFT_62806 [Trichoplax adhaerens] Length = 863 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 79/225 (35%), Gaps = 47/225 (20%) Query: 9 EHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLC 67 E S + ++S+TK + AS A A AG+GKT +L RV+ L+ A PS +L Sbjct: 380 EFSNFVGILSKTKVKLDQASKAIGDAEYKAGAGTGKTKVLTSRVIHLINKGFAFPSQILA 439 Query: 68 LTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILET 127 +T T EM + + S Sbjct: 440 VTFT--IGNEMKQEFEKFLNNIS------------------------------------- 460 Query: 128 PGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEE 187 G + + T H+ I+++ + F I +++ +LI++ K LD+ Sbjct: 461 -GSMNIGTFHSMAAKILRRHAELIGYNTDFTIINQDDQIRLIKQLIKDF----GLDDKNT 515 Query: 188 LKKAFYEILEISNDEDI--ETLISDIISNRTALKLIFFFFSYLWR 230 K + D I + L S + + KL + Y R Sbjct: 516 SAKVLLYYINRFKDRAIMPKNLSSQEVEHYANGKLNEIYCEYQNR 560 >gi|218249690|ref|YP_002374864.1| DNA helicase [Borrelia burgdorferi ZS7] gi|226321661|ref|ZP_03797187.1| DNA helicase [Borrelia burgdorferi Bol26] gi|218164878|gb|ACK74939.1| DNA helicase [Borrelia burgdorferi ZS7] gi|226232850|gb|EEH31603.1| DNA helicase [Borrelia burgdorferi Bol26] Length = 698 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 50/190 (26%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAE 77 T E+++ S V A GSGKT +++ +++ L+ N P+ +L LT T AA E Sbjct: 12 NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKYMNIDPNEILALTFTNKAANE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ R+ +++ L +QT H Sbjct: 72 MNDRINDLLKFDKK---------------------------------------LHIQTFH 92 Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187 +F +++ + N S+F I D K ++ E K A I+ D Sbjct: 93 SFGSWLLRVYYKDFNENYDSNFTIWDTNDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 152 Query: 188 LKKAFYEILE 197 + F + E Sbjct: 153 FLEKFIQFTE 162 >gi|27905008|ref|NP_778134.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|32129937|sp|Q89A21|REP_BUCBP RecName: Full=ATP-dependent DNA helicase rep gi|27904406|gb|AAO27239.1| ATP-dependent DNA helicase Rep [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 670 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 62/158 (39%), Gaps = 38/158 (24%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAA 75 + + ++ S + + A AGSGKT +++ +++ L+ + + P + +T T AA Sbjct: 1 MLFNEHQKKAISYISGPCLILAGAGSGKTRVIINKIVHLIKICHFDPKCITAITFTNKAA 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM R+L +++ + +K+ T Sbjct: 61 CEMKSRILNVLS-------------------------------------VNVSNLVKIST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAK 173 HA I++ NI S+F I DE+ +++E Sbjct: 84 FHALGLEIIKSEIELLNIKSNFTIFDEQDQISILQEIV 121 >gi|293603085|ref|ZP_06685519.1| ATP-dependent DNA helicase Rep [Achromobacter piechaudii ATCC 43553] gi|292818479|gb|EFF77526.1| ATP-dependent DNA helicase Rep [Achromobacter piechaudii ATCC 43553] Length = 687 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 71/200 (35%), Gaps = 55/200 (27%) Query: 9 EHSETI-DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLL 66 SETI ++ + E +L D V A AGSGKT ++ Q++ LL ++ Sbjct: 2 SASETIAQGMNPAQREAVLYLD--GPCLVLAGAGSGKTRVITQKIAYLLRECGYMGRNVV 59 Query: 67 CLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILE 126 LT T AA EM RV ++ Sbjct: 60 ALTFTNKAAREMDERVKTLVDRKLSK---------------------------------- 85 Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK------------ 174 GL + T H+ ++++ A + F+I D + + +I+E Sbjct: 86 ---GLIISTFHSLGVKMLREEARNAGLKPTFSILDADDAMSIIQELLATTDKARLRHVQG 142 Query: 175 --STLASIMLDNNEELKKAF 192 S + +++ ++ ++A Sbjct: 143 IISLWKNALMEPDDAAREAV 162 >gi|109896401|ref|YP_659656.1| ATP-dependent DNA helicase Rep [Pseudoalteromonas atlantica T6c] gi|109698682|gb|ABG38602.1| ATP-dependent DNA helicase Rep [Pseudoalteromonas atlantica T6c] Length = 671 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 74/201 (36%), Gaps = 46/201 (22%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPST-LLCLTHTKAAA 75 + + + + V A AGSGKT ++ ++ L+ P+ + +T T A+ Sbjct: 1 MKLNPGQNDAVNYISGPCLVLAGAGSGKTRVITNKIAYLVRECDIPARYIAAVTFTNKAS 60 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV + + +AR GLKV T Sbjct: 61 REMKERVAQTLGR--------------------------KEAR-----------GLKVST 83 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 H I++ + + F++ D++ S L+++ L + L ++E + Sbjct: 84 FHTLGLRIIKTEVKTLGLKAGFSLFDDKDSMALLKD-----LTDVELGGDKEQLQLLQSC 138 Query: 196 LEISNDEDIETLISDIISNRT 216 + ++ + L+ + + RT Sbjct: 139 I---SNWKNDLLLPEQLLKRT 156 >gi|225549079|ref|ZP_03770054.1| DNA helicase [Borrelia burgdorferi 94a] gi|225370305|gb|EEG99743.1| DNA helicase [Borrelia burgdorferi 94a] Length = 698 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 50/190 (26%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 T E+++ S V A GSGKT +++ +++ L+ N P+ +L LT T AA E Sbjct: 12 NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKHMNIDPNEILALTFTNKAANE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ R+ +++ L +QT H Sbjct: 72 MNDRINDLLKFDKK---------------------------------------LHIQTFH 92 Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187 + +++ + + N S+F I D K ++ E K A I+ D Sbjct: 93 SLGSWLLRVYYKDFDKNYDSNFTIWDTNDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 152 Query: 188 LKKAFYEILE 197 + F E E Sbjct: 153 FLEKFIEFTE 162 >gi|21233561|ref|NP_639478.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770527|ref|YP_245289.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|188993747|ref|YP_001905757.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris str. B100] gi|21115421|gb|AAM43360.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575859|gb|AAY51269.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris str. 8004] gi|167735507|emb|CAP53722.1| ATP-dependent DNA helicase [Xanthomonas campestris pv. campestris] Length = 658 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 67/205 (32%), Gaps = 48/205 (23%) Query: 16 LISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAA 74 + + V A AGSGKT ++V+++ L+ +P + +T T + Sbjct: 1 MHGLNPPQSAAVLHCEGPLLVLAGAGSGKTRVIVEKIAHLIAIGRYPAKRIAAITFTNKS 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV + I + GL + Sbjct: 61 AKEMRERVAKRIRG-------------------------------------DGADGLTIC 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 T HA +Q A + F+I D + + I++ +M + + Sbjct: 84 TFHALGLKFLQIEHAAAGLKRGFSIFDSDDAAAQIKD--------LMHGAKPDAIEDAKN 135 Query: 195 ILEISNDEDI--ETLISDIISNRTA 217 ++ + + + E ++ SNR Sbjct: 136 LISRAKNAGMSPEQAMAAARSNREK 160 >gi|221217822|ref|ZP_03589290.1| DNA helicase [Borrelia burgdorferi 72a] gi|224533705|ref|ZP_03674293.1| DNA helicase [Borrelia burgdorferi CA-11.2a] gi|221192499|gb|EEE18718.1| DNA helicase [Borrelia burgdorferi 72a] gi|224512998|gb|EEF83361.1| DNA helicase [Borrelia burgdorferi CA-11.2a] Length = 698 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 50/190 (26%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 T E+++ S V A GSGKT +++ +++ L+ N P+ +L LT T AA E Sbjct: 12 NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKHMNIDPNEILALTFTNKAANE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ R+ +++ L +QT H Sbjct: 72 MNDRINDLLKFDKK---------------------------------------LHIQTFH 92 Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187 + +++ + + N S+F I D K ++ E K A I+ D Sbjct: 93 SLGSWLLRVYYKDFDKNYDSNFTIWDTNDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 152 Query: 188 LKKAFYEILE 197 + F E E Sbjct: 153 FLEKFIEFTE 162 >gi|217970262|ref|YP_002355496.1| exodeoxyribonuclease V subunit beta [Thauera sp. MZ1T] gi|217507589|gb|ACK54600.1| exodeoxyribonuclease V, beta subunit [Thauera sp. MZ1T] Length = 1321 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 65/164 (39%), Gaps = 17/164 (10%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAH----------PSTLLCLTHTKAAAAEMSH 80 S + A+AG+GKT + LRL+L + P+ +L +T T+AA E+S Sbjct: 13 RGSRLIEASAGTGKTWTIAALYLRLVLGHGDADTAFARPLLPAEILVMTFTRAATRELSE 72 Query: 81 RVLEIITAWS-----HLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 R+ E + + + + +++ P+ + A L V T Sbjct: 73 RIRERLREAAAWFRNEDAGRAPDPLLDELRAAYPDAAARRNAAWRLAMAAAAMDDAAVFT 132 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLAS 179 I A+C+ ++++ ++ +A L+ EA + Sbjct: 133 IDAWCQRMLREHAFDSGNPFDEELA--ADESVLLTEAAQDYWRQ 174 >gi|218708696|ref|YP_002416317.1| exodeoxyribonuclease V subunit beta [Vibrio splendidus LGP32] gi|218321715|emb|CAV17669.1| Exodeoxyribonuclease V beta chain [Vibrio splendidus LGP32] Length = 1224 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 56/168 (33%), Gaps = 25/168 (14%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH------------------PSTLLCLTHTKAAAA 76 + A+AG+GKT + LRLLL + +L +T T+AA A Sbjct: 27 LIEASAGTGKTFTIAGLYLRLLLGHGTAAPQGDLTEATRHHEPLTVDQILVVTFTEAATA 86 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R+ I S + + A+ LL V TI Sbjct: 87 ELRDRIRARIHDARIAFARGQSDDPVIAPLLQAIDDHAGAAKTLL-NAERQMDEAAVYTI 145 Query: 137 HAFCEAIMQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIML 182 H FC+ ++ Q E+ + F + DE L + Sbjct: 146 HGFCQRMLTQNAFESGSRFDNEF-VTDESH---LKAQVVADYWRKQFY 189 >gi|187780046|ref|ZP_02996519.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC 15579] gi|187773671|gb|EDU37473.1| hypothetical protein CLOSPO_03642 [Clostridium sporogenes ATCC 15579] Length = 855 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 40/158 (25%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAA 75 I +Q + ++ + ++AG+GKT L R+ ++ + A +LCLT T A Sbjct: 4 IYFNDKQQKVIDTLDKNILLLSSAGTGKTKTLSSRIGNIIDKSLASGDEILCLTFTNRAC 63 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM +++E + + V+T Sbjct: 64 KEMKEKIIETVGKEGL--------------------------------------KVTVKT 85 Query: 136 IHAFCEAIMQQFPLE-ANITSHFAIADEEQSKKLIEEA 172 H+FC ++++ + +I+ F I DEE +K++I E Sbjct: 86 FHSFCFDVIKKEAKKNTDISFDFTIYDEEDTKEIISEL 123 >gi|325273681|ref|ZP_08139889.1| ATP-dependent DNA helicase Rep [Pseudomonas sp. TJI-51] gi|324101185|gb|EGB98823.1| ATP-dependent DNA helicase Rep [Pseudomonas sp. TJI-51] Length = 669 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEARDYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV ++ GL V T H Sbjct: 65 KERVGTLLRPGEGR-------------------------------------GLTVCTFHN 87 Query: 139 FCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 I+++ F+I DE K L+ + + Sbjct: 88 LGLNIIRKEHERLGYKPGFSIFDESDIKALLSDIMQ 123 >gi|225550062|ref|ZP_03771022.1| DNA helicase [Borrelia burgdorferi 118a] gi|225369174|gb|EEG98627.1| DNA helicase [Borrelia burgdorferi 118a] Length = 698 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 50/190 (26%) Query: 19 QTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAE 77 T E+++ S V A GSGKT +++ +++ L+ N P+ +L LT T AA E Sbjct: 12 NTSQEKIVFSKSKNPMLVLAGPGSGKTRVIIAKIVYLIKHMNIDPNEILALTFTNKAANE 71 Query: 78 MSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIH 137 M+ R+ +++ L +QT H Sbjct: 72 MNDRINDLLKFDKK---------------------------------------LHIQTFH 92 Query: 138 AFCEAIMQQFP--LEANITSHFAIADEEQSKKLIE--------EAKKSTLASIMLDNNEE 187 + +++ + + N S+F I D K ++ E K A I+ D Sbjct: 93 SLGSWLLRVYYKDFDKNYDSNFTIWDTNDVVKFVKQIDLAPNLEMAKHIAALILKDKENF 152 Query: 188 LKKAFYEILE 197 + F E E Sbjct: 153 FLEKFIEFTE 162 >gi|254374203|ref|ZP_04989685.1| hypothetical protein FTDG_00366 [Francisella novicida GA99-3548] gi|151571923|gb|EDN37577.1| hypothetical protein FTDG_00366 [Francisella novicida GA99-3548] Length = 671 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 38/146 (26%) Query: 31 TRSAWVSANAGSGKTHILVQRVLRLLLANAHP-STLLCLTHTKAAAAEMSHRVLEIITAW 89 V A AGSGKT ++++++ L+ +P ++L +T T AA EM RV + Sbjct: 17 ATPLLVLAGAGSGKTSVIIEKISYLIEQLLYPAKSILAVTFTNKAAKEMQERVKSRL--- 73 Query: 90 SHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPL 149 D K++ GL + T H+ +I+++ Sbjct: 74 -----------------------DKEKSK-----------GLMISTFHSLGLSILKKHFN 99 Query: 150 EANITSHFAIADEEQSKKLIEEAKKS 175 E +F + D S LI + Sbjct: 100 ELGYKKNFTLFDSHDSLALIYDIAYD 125 >gi|331005810|ref|ZP_08329167.1| ATP-dependent DNA helicase Rep [gamma proteobacterium IMCC1989] gi|330420371|gb|EGG94680.1| ATP-dependent DNA helicase Rep [gamma proteobacterium IMCC1989] Length = 674 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 52/160 (32%), Gaps = 39/160 (24%) Query: 17 ISQTKSEQLLASDP-TRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAA 74 +S Q A+ V A AGSGKT ++ +++ L+ + LT T A Sbjct: 1 MSTLNPRQREATHYIDGPCLVLAGAGSGKTSVITRKIAYLIEECGLSARNIAALTFTNKA 60 Query: 75 AAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQ 134 A EM RV ++ GL V Sbjct: 61 AKEMKERVSALLKGTG-------------------------------------ARGLTVS 83 Query: 135 TIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKK 174 T H I+++ F+I D E + L++E + Sbjct: 84 TFHNLGLNIIRRDHTLFGYKPGFSIFDSEDCRSLLKEIMQ 123 >gi|302870676|ref|YP_003839313.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029] gi|302573535|gb|ADL49737.1| UvrD/REP helicase [Micromonospora aurantiaca ATCC 27029] Length = 1061 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 39/138 (28%) Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHR 81 +++ AS P + A G+GKT L R+ L N P L +T T+ AA E+ HR Sbjct: 517 QRVAASAPGGPLLIVAGPGTGKTRTLTHRIAYLCAELNVFPDQCLAITFTRRAAEELRHR 576 Query: 82 VLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCE 141 + ++ + + V T H+ Sbjct: 577 LDGLLGPVAE--------------------------------------DVTVGTFHSLGL 598 Query: 142 AIMQQFPLEANITSHFAI 159 ++++ A + + F I Sbjct: 599 TVLRENATAAGLPADFRI 616 >gi|261392848|emb|CAX50429.1| exodeoxyribonuclease V beta chain [Neisseria meningitidis 8013] Length = 1204 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 62/159 (38%), Gaps = 24/159 (15%) Query: 35 WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86 + A+AG+GKT+ + RL+ L + +L +T TKAA AE+ R+ + Sbjct: 20 LIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVL 79 Query: 87 --TAWSHLSDEILSAEITK--------------IQGKKPNKSDMSKARHLLITILETPGG 130 + L D+ LS I + + K ++ L + Sbjct: 80 ESKEIAKLGDDTLSDGIAAYCAEHHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + LI Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178 >gi|86145658|ref|ZP_01063988.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio sp. MED222] gi|85836629|gb|EAQ54755.1| exodeoxyribonuclease V, 135 kDa subunit [Vibrio sp. MED222] Length = 1224 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 56/168 (33%), Gaps = 25/168 (14%) Query: 35 WVSANAGSGKTHILVQRVLRLLLANAH------------------PSTLLCLTHTKAAAA 76 + A+AG+GKT + LRLLL + +L +T T+AA A Sbjct: 27 LIEASAGTGKTFTIAGLYLRLLLGHGTAAPQGDLTEATRHHEPLTVDQILVVTFTEAATA 86 Query: 77 EMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTI 136 E+ R+ I S + + A+ LL V TI Sbjct: 87 ELRDRIRARIHDARIAFARGQSDDPVIAPLLQAIDDHAGAAKTLL-NAERQMDEAAVYTI 145 Query: 137 HAFCEAIMQQFPLEAN--ITSHFAIADEEQSKKLIEEAKKSTLASIML 182 H FC+ ++ Q E+ + F + DE L + Sbjct: 146 HGFCQRMLTQNAFESGSRFDNEF-VTDESH---LKAQVVADYWRKQFY 189 >gi|311103603|ref|YP_003976456.1| ATP-dependent DNA helicase Rep [Achromobacter xylosoxidans A8] gi|310758292|gb|ADP13741.1| ATP-dependent DNA helicase Rep [Achromobacter xylosoxidans A8] Length = 677 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 40/161 (24%) Query: 17 ISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAA 75 ++ + E +L D V A AGSGKT ++ Q++ LL ++ LT T AA Sbjct: 1 MNPAQREAVLYLD--GPCLVLAGAGSGKTRVITQKIAYLLRECGYMGRNVVALTFTNKAA 58 Query: 76 AEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 EM RV ++ GL + T Sbjct: 59 REMDERVKTLVDRKLSK-------------------------------------GLIIST 81 Query: 136 IHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKST 176 H+ ++++ A + F+I D + + +I+E +T Sbjct: 82 FHSLGVKMLREEARNAGLKPTFSILDADDAMAIIQELLNTT 122 >gi|254804663|ref|YP_003082884.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis alpha14] gi|254668205|emb|CBA04955.1| exodeoxyribonuclease V, beta subunit [Neisseria meningitidis alpha14] Length = 1204 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 24/159 (15%) Query: 35 WVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII------- 86 + A+AG+GKT+ + RL+ L + +L +T TKAA AE+ R+ + Sbjct: 20 LIEASAGTGKTYGIAALFTRLIVLEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVL 79 Query: 87 --TAWSHLSDEILSAEITK--------------IQGKKPNKSDMSKARHLLITILETPGG 130 + L D LS I + + K ++ L + Sbjct: 80 ESKEIAELGDGALSDGIAAYCAEHHKGDTFLPALLKQALQKEGRTRLIVRLKAAIGQFDN 139 Query: 131 LKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLI 169 + TIH FC+ I++ + + +E+ + LI Sbjct: 140 AAIYTIHGFCQRILRDYAFLCQAPFDVELTEEDGDRLLI 178 >gi|212702577|ref|ZP_03310705.1| hypothetical protein DESPIG_00601 [Desulfovibrio piger ATCC 29098] gi|212674018|gb|EEB34501.1| hypothetical protein DESPIG_00601 [Desulfovibrio piger ATCC 29098] Length = 1095 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 71/181 (39%), Gaps = 38/181 (20%) Query: 36 VSANAGSGKTHILVQRVLRLLLA--------------NAHP---STLLCLTHTKAAAAEM 78 V A+AGSGKT+ L +R L LL A P +L +T T AAA EM Sbjct: 7 VKASAGSGKTYDLTRRFLCLLAACGSPAPAAAASCGLGNGPSGWDEILAITFTNAAAGEM 66 Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHA 138 RV+ + A + + E K A L IL L ++TI + Sbjct: 67 RDRVIGRLKAIALGTPE------------KDIPLTPDMAARWLDVILRDLASLNIRTIDS 114 Query: 139 FCEAIMQQFPLEANITSHFA---IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEI 195 AI++ L+ ++ F ++ + + L TL + NE ++K ++ Sbjct: 115 LLHAIVRSASLQLDLPPDFQPAFVSMDAVTPYL------DTLLNQASQGNEAMEKLLRDL 168 Query: 196 L 196 Sbjct: 169 Y 169 >gi|167036302|ref|YP_001671533.1| ATP-dependent DNA helicase Rep [Pseudomonas putida GB-1] gi|166862790|gb|ABZ01198.1| ATP-dependent DNA helicase Rep [Pseudomonas putida GB-1] Length = 669 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 38/156 (24%) Query: 20 TKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEM 78 +Q V A AGSGKT ++ +++ L+ ++ +T T AA EM Sbjct: 5 NPRQQEARDYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREM 64 Query: 79 SHRVLEIITAWSH