RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= 537021.9.peg.409_1
(242 letters)
>gnl|CDD|163018 TIGR02784, addA_alphas, double-strand break repair helicase AddA,
alphaproteobacterial type. AddAB, also called RexAB,
substitutes for RecBCD in several bacterial lineages.
These DNA recombination proteins act before synapse and
are particularly important for DNA repair of
double-stranded breaks by homologous recombination. The
term AddAB is used broadly, with AddA homologous between
the alphaproteobacteria (as modeled here) and the
Firmicutes, while the partner AddB proteins show no
strong homology across the two groups of species.
Length = 1141
Score = 229 bits (586), Expect = 5e-61
Identities = 94/196 (47%), Positives = 135/196 (68%), Gaps = 1/196 (0%)
Query: 23 EQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRV 82
Q ASDP SAWVSANAGSGKTH+L QRV+RLLL PS +LCLT+TKAAAAEM +RV
Sbjct: 2 RQARASDPKTSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRV 61
Query: 83 LEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEA 142
+ + W+ L D L A + ++GK+P+ + +++AR L LETPGGLK+QTIHAFCE+
Sbjct: 62 FDRLGEWAVLDDAELRARLEALEGKRPDAAKLAEARRLFARALETPGGLKIQTIHAFCES 121
Query: 143 IMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDE 202
++ QFPLEAN+ HF++ D+ + L+ EA+++ LA + ++ L A +LE + +
Sbjct: 122 LLHQFPLEANVAGHFSVMDDRAAATLLAEARRALLAHVAAA-DDALADALATVLEAAGET 180
Query: 203 DIETLISDIISNRTAL 218
E L+++I++ R L
Sbjct: 181 GFEALLAEIVARRAHL 196
Score = 26.2 bits (58), Expect = 8.8
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 15 DLISQTKSEQLLASDPTRSAWVSANAGSGKTHILV 49
DLI ++ LLA P AWV G HILV
Sbjct: 366 DLI--ERTVALLA-RPGAGAWVHYKLDRGIDHILV 397
>gnl|CDD|163019 TIGR02785, addA_Gpos, recombination helicase AddA, Firmicutes type.
AddAB, also called RexAB, substitutes for RecBCD in
several bacterial lineages. These DNA recombination
proteins act before synapse and are particularly
important for DNA repair of double-stranded breaks by
homologous recombination. The term AddAB is used
broadly, with AddA homologous between the Firmicutes (as
modeled here) and the alphaproteobacteria, while the
partner AddB proteins show no strong homology across the
two groups of species.
Length = 1232
Score = 77.8 bits (192), Expect = 2e-15
Identities = 52/204 (25%), Positives = 86/204 (42%), Gaps = 32/204 (15%)
Query: 36 VSANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDE 95
VSA+AGSGKT +LV+R+++ +L LL +T T AAA EM R+ E
Sbjct: 19 VSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEE----------- 67
Query: 96 ILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITS 155
+ K ++PN + + LL T + T+H+FC ++++ ++
Sbjct: 68 ----ALQKALQQEPNSKHLRRQLALLNTA-------NISTLHSFCLKVIRKHYYLLDLDP 116
Query: 156 HFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILE-ISNDEDIETLISDIISN 214
F I + + LI+E + + F+E+ + S D + L D+I
Sbjct: 117 SFRILTDTEQLLLIKEVVDDVFEEEYYKED---NEGFFELTDNFSGDRSDDGL-RDLI-- 170
Query: 215 RTALKLIFFFFSYLWRRKIIEKSL 238
LKL F S K +
Sbjct: 171 ---LKLYDFARSTPNPEKWLNNLA 191
>gnl|CDD|184388 PRK13909, PRK13909, putative recombination protein RecB;
Provisional.
Length = 910
Score = 74.2 bits (183), Expect = 3e-14
Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 11/167 (6%)
Query: 38 ANAGSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEIL 97
A+AGSGKT L R L LL A+PS +L LT TK AA EM R+++ + +E
Sbjct: 5 ASAGSGKTFALSVRFLALLFKGANPSEILALTFTKKAANEMKERIIDTLLNLEKEKEESE 64
Query: 98 SAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHF 157
E+ + G + ++K + L + LK+ TI AF + I+++F L ++ F
Sbjct: 65 LNELEEKLGLSKEEL-LNKRDKVYQEFLNS--ELKISTIDAFFQKILRKFCLNLGLSPDF 121
Query: 158 AIAD---EEQSKKLIEEAKK----STLASIMLDNNEELKKAFYEILE 197
+I + EE ++K + K LA I +++ F+E+LE
Sbjct: 122 SIKEDTKEELNEKFLSALSKEELLELLAFIKQCESKKNNS-FFELLE 167
>gnl|CDD|161956 TIGR00609, recB, exodeoxyribonuclease V, beta subunit. All
proteins in this family for which functions are known
are DNA-DNA helicases that are used as part of an
exonuclease-helicase complex (made up of RecBCD
homologs) that function to generate substrates for the
initiation of recombination and recombinational repair.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University).
Length = 1087
Score = 53.6 bits (129), Expect = 5e-08
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 38 ANAGSGKTHILVQRVLRLLL--ANAHPSTLLCLTHTKAAAAEMSHRVLE-IITAWSHLSD 94
A+AG+GKT + Q LRLLL +L +T T AA E+ R+ I A L
Sbjct: 16 ASAGTGKTFTIAQLYLRLLLEGGPLTVEEILVVTFTNAATEELKTRIRGRIHQALRALKA 75
Query: 95 EILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQF 147
+ S E+ + + + +A L L T + TIH FC+ +++Q
Sbjct: 76 ALTSQELPEPLKEAIQDEKVKQAITRLRNALATMDEAAIYTIHGFCQRMLEQH 128
>gnl|CDD|130147 TIGR01075, uvrD, DNA helicase II. Designed to identify uvrD
members of the uvrD/rep subfamily.
Length = 715
Score = 52.1 bits (125), Expect = 1e-07
Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 39/147 (26%)
Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEIITA 88
P + V A AGSGKT +L R+ LL + NA P +++ +T T AAAEM HR+ ++
Sbjct: 16 PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGT 75
Query: 89 WSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFP 148
+ G+ + T H +++
Sbjct: 76 --------------------------------------SARGMWIGTFHGLAHRLLRAHH 97
Query: 149 LEANITSHFAIADEEQSKKLIEEAKKS 175
L+A + F I D + +L++ K+
Sbjct: 98 LDAGLPQDFQILDSDDQLRLLKRLIKA 124
>gnl|CDD|183307 PRK11773, uvrD, DNA-dependent helicase II; Provisional.
Length = 721
Score = 49.5 bits (119), Expect = 8e-07
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 30 PTRSAWVSANAGSGKTHILVQRVLRLL-LANAHPSTLLCLTHTKAAAAEMSHRVLEII 86
P + V A AGSGKT +LV R+ L+ + NA P +++ +T T AAAEM HR+ +++
Sbjct: 21 PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL 78
>gnl|CDD|162191 TIGR01073, pcrA, ATP-dependent DNA helicase PcrA. Designed to
identify pcrA members of the uvrD/rep subfamily.
Length = 726
Score = 44.0 bits (104), Expect = 4e-05
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 38 ANAGSGKTHILVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEII 86
A AGSGKT +L R+ L+ N P +L +T T AA EM RV +++
Sbjct: 24 AGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLL 73
>gnl|CDD|182930 PRK11054, helD, DNA helicase IV; Provisional.
Length = 684
Score = 40.3 bits (95), Expect = 5e-04
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 36 VSANAGSGKTHILVQRVLRLLLAN-AHPSTLLCLTHTKAAAAEMSHRVLE 84
V A AGSGKT +LV R LL A P +L L + AA EM R+ E
Sbjct: 214 VLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRE 263
>gnl|CDD|130146 TIGR01074, rep, ATP-dependent DNA helicase Rep. Designed to
identify rep members of the uvrD/rep subfamily.
Length = 664
Score = 38.6 bits (90), Expect = 0.001
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 14/104 (13%)
Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRVLE---------- 84
V A AGSGKT ++ ++ L+ + + +T T AA EM RV +
Sbjct: 19 VLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKGEARGL 78
Query: 85 IITAWSHLSDEILSAEITKIQGKKPNKS--DMSKARHLLITILE 126
I+ + L +I+ E + G K N S D + LL + E
Sbjct: 79 TISTFHTLGLDIIKREYNAL-GYKSNFSLFDETDQLALLKELTE 121
>gnl|CDD|128763 smart00487, DEXDc, DEAD-like helicases superfamily.
Length = 201
Score = 35.9 bits (83), Expect = 0.009
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 8/91 (8%)
Query: 41 GSGKTHILVQRVLRLLLANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAE 100
GSGKT + L L L L T+ A + + + + +
Sbjct: 34 GSGKTLAALLPALEALKRGKGKRV-LVLVPTRELAEQWAEELKK----LGPSLGLKVVGL 88
Query: 101 ITKIQGKKPNKSDMSKARHLLITILETPGGL 131
++ + S +L+T TPG L
Sbjct: 89 YGGDSKREQLRKLESGKTDILVT---TPGRL 116
>gnl|CDD|182801 PRK10876, recB, exonuclease V subunit beta; Provisional.
Length = 1181
Score = 34.6 bits (80), Expect = 0.026
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 36 VSANAGSGKTHILVQRVLRLLL----ANAHPSTL-----LCLTHTKAAAAEMSHRVLEII 86
+ A+AG+GKT + LRLLL + A P L L +T T+AA E+ R+ I
Sbjct: 22 IEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEEILVVTFTEAATEELRGRIRSNI 81
>gnl|CDD|182838 PRK10919, PRK10919, ATP-dependent DNA helicase Rep; Provisional.
Length = 672
Score = 31.3 bits (71), Expect = 0.24
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 36 VSANAGSGKTHILVQRVLRLLLANAH-PSTLLCLTHTKAAAAEMSHRV 82
V A AGSGKT ++ ++ L+ + + +T T AA EM RV
Sbjct: 20 VLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERV 67
>gnl|CDD|132401 TIGR03358, VI_chp_5, type VI secretion protein, VC_A0107 family.
Work by Mougous, et al. (2006), describes IAHP-related
loci as a type VI secretion system (PubMed:16763151).
This protein family is associated with type VI secretion
loci, although not treated explicitly by Mougous, et al.
Length = 159
Score = 28.8 bits (65), Expect = 1.3
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 182 LDNNEELKKAFYEILEISNDEDIETLISDIISN 214
LDNN +L+K E+L + + +E L+S++ +
Sbjct: 129 LDNNPDLRKLLQELL--KDKDLLEKLLSELGAK 159
>gnl|CDD|161832 TIGR00348, hsdR, type I site-specific deoxyribonuclease, HsdR
family. Members of this family are assumed to differ
from each other in DNA site specificity.
Length = 667
Score = 28.5 bits (64), Expect = 1.5
Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
Query: 94 DEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANI 153
D L E +Q + + S A L + + GG+ + TI F + + ++
Sbjct: 306 DYQLMKEFQSLQKDCAERIE-SIA-ELKRLLEKDDGGIIITTIQKFDKKLKEEE------ 357
Query: 154 TSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
F + D ++ + +EA +S + + + LK A +
Sbjct: 358 -EKFPV-DRKEVVVIFDEAHRSQYGELAKNLKKALKNASF 395
>gnl|CDD|178011 PLN02385, PLN02385, hydrolase; alpha/beta fold family protein.
Length = 349
Score = 27.8 bits (62), Expect = 2.6
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 159 IADEEQSKKLIEEAKKSTLASIMLDNNEEL-KKAFYEILEISNDEDIETLISDIIS 213
+ D SK L E+A S D +L + A++ ILE DE I ++ DIIS
Sbjct: 292 VTDPSVSKFLYEKASSS-------DKKLKLYEDAYHSILEGEPDEMIFQVLDDIIS 340
>gnl|CDD|184801 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 27.9 bits (62), Expect = 2.8
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 161 DEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR 215
DEE+S+++ E + + EE K +YE+ E N E + I ++I+ R
Sbjct: 287 DEEKSEEVKTE-------EVDEEFEEEEKGFYYELYEKVNIEANKKFIKEVIAGR 334
>gnl|CDD|128968 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM.
This superfamily contains MoaA, NifB, PqqE,
coproporphyrinogen III oxidase, biotin synthase and MiaB
families, and includes a representative in the
eukaryotic elongator subunit, Elp-3. Some members of the
family are methyltransferases.
Length = 216
Score = 27.4 bits (61), Expect = 3.4
Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 127 TPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTL--ASIMLD- 183
TP L + + EAI + L ++ +++L+E K++ + S+ +
Sbjct: 61 TPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQS 120
Query: 184 -NNEELKKA--------FYEILEISNDEDIETLISDII 212
++E LK E +E + + +D+I
Sbjct: 121 GSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLI 158
>gnl|CDD|163254 TIGR03420, DnaA_homol_Hda, DnaA regulatory inactivator Hda.
Members of this protein family are Hda (Homologous to
DnaA). These proteins are about half the length of DnaA
and homologous over length of Hda. In the model species
Escherichia coli, the initiation of DNA replication
requires DnaA bound to ATP rather than ADP; Hda helps
facilitate the conversion of DnaA-ATP to DnaA-ADP.
Length = 226
Score = 26.8 bits (60), Expect = 5.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 23 EQLLASDPTRSAWVSANAGSGKTHIL 48
QL A R ++ +GSGK+H+L
Sbjct: 30 RQLAAGKGDRFLYLWGESGSGKSHLL 55
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 26.7 bits (59), Expect = 5.7
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 48 LVQRVLRLL--LANAHPSTLLCLTHTKAAAAEMSHRVL 83
LV VL ++ LA+ H T+L +TH A E + RV
Sbjct: 181 LVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVC 218
>gnl|CDD|152382 pfam11947, DUF3464, Protein of unknown function (DUF3464). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 137 to 196
amino acids in length.
Length = 149
Score = 26.5 bits (59), Expect = 5.8
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 14/93 (15%)
Query: 161 DEEQSKKLIEEAKKST-LASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNR---- 215
K+L E K+S + + S + E+ I ++SNR
Sbjct: 1 MASSRKRLPFEPKRSRKKGYKAARKAAVAASKDKQKKKKSKRKASESGIPKVVSNRMIRR 60
Query: 216 --------TALKLIFFFFSY-LWRRKIIEKSLW 239
TAL + F SY L R II+ W
Sbjct: 61 IAFFSGIPTALGMAVFVVSYLLVSRGIIDVPPW 93
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking
protein.
Length = 214
Score = 26.4 bits (59), Expect = 6.7
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 48 LVQRVLRLLLA-NAHPSTLLCLTHTKAAAAEMSHRVLEI 85
L +R+L LL N +T++ TH + ++HRV+ +
Sbjct: 172 LSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIIL 210
>gnl|CDD|178475 PLN02887, PLN02887, hydrolase family protein.
Length = 580
Score = 26.4 bits (58), Expect = 6.8
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
Query: 158 AIADEEQSKKLIEEAKKSTLAS--IMLDNNEELKKAFYEILEISNDED 203
AI D E ++++ LAS + L N E KA +++ +SNDED
Sbjct: 528 AIGDGENDIEMLQ------LASLGVALSNGAEKTKAVADVIGVSNDED 569
>gnl|CDD|180655 PRK06676, rpsA, 30S ribosomal protein S1; Reviewed.
Length = 390
Score = 26.4 bits (59), Expect = 6.8
Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 47/127 (37%)
Query: 79 SHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHLLITILETPGGL--KVQTI 136
S R LE AW L ++ E+ +++ + GGL V+ +
Sbjct: 86 SKRRLEAEKAWDKLEEKFEEGEVVEVKVTE-----------------VVKGGLVVDVEGV 128
Query: 137 HAFCEAIM---------QQF---PLEANIT-----------SHFAIADEEQSKKLIEEAK 173
F A + F LE I S A+ +EE+ K
Sbjct: 129 RGFIPASLISTRFVEDFSDFKGKTLEVKIIELDPEKNRVILSRRAVVEEER-----AAKK 183
Query: 174 KSTLASI 180
+ L+S+
Sbjct: 184 EELLSSL 190
>gnl|CDD|184380 PRK13897, PRK13897, type IV secretion system component VirD4;
Provisional.
Length = 606
Score = 26.3 bits (58), Expect = 7.1
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 159 IADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYEILEISNDEDIETLISDIISNRT 216
I D EQ K + EEA N L + Y I +N+ + LIS ++ N+T
Sbjct: 442 IQDTEQLKGIYEEAGM----------NSFLSNSTYRITFAANNIETANLISQLVGNKT 489
>gnl|CDD|185423 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional.
Length = 202
Score = 25.8 bits (57), Expect = 9.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 160 ADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFY 193
+ + +K +EA+K LA + LKK Y
Sbjct: 168 KKKVKLRKAWKEARKKALAKLPKAIVAVLKKFGY 201
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.317 0.129 0.360
Gapped
Lambda K H
0.267 0.0793 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,763,099
Number of extensions: 228988
Number of successful extensions: 762
Number of sequences better than 10.0: 1
Number of HSP's gapped: 750
Number of HSP's successfully gapped: 57
Length of query: 242
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 151
Effective length of database: 4,028,145
Effective search space: 608249895
Effective search space used: 608249895
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)