BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 537021.9.peg.409_1
(242 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>537021.9.peg.409_1
Length = 242
Score = 489 bits (1260), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA
Sbjct: 1 MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60
Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL
Sbjct: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120
Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI
Sbjct: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWS 240
MLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWS
Sbjct: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWS 240
Query: 241 IA 242
IA
Sbjct: 241 IA 242
>gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62]
Length = 685
Score = 44.3 bits (103), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 45/150 (30%)
Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96
A AG+GKT +L+ R+L L+ PS +L +T T A EM +R+ +L ++I
Sbjct: 50 AGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLA------CYLGEKI 103
Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156
++QT H+FC +I+++ + +
Sbjct: 104 ----------------------------------PRIQTFHSFCASILRKHGEVVGLPTD 129
Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNE 186
FAI D +S+ +I K L + +D+ +
Sbjct: 130 FAILDSAESRTII----KQLLKDLQIDDKD 155
>gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus Liberibacter asiaticus str. psy62]
Length = 542
Score = 26.6 bits (57), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 18/96 (18%)
Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180
LI + GG+ + H A Q F ++ N TS A E+Q++ + EE+KK T
Sbjct: 97 LIRKYKASGGIILTASHNPAGA-TQDFGIKYN-TSSGGSASEQQTEDIFEESKKITS--- 151
Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNRT 216
Y+I+E +ND DI + + ++N T
Sbjct: 152 ------------YQIIE-ANDVDINHIGTKELANMT 174
>gi|254780370|ref|YP_003064783.1| argininosuccinate lyase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 473
Score = 26.2 bits (56), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWS-------HLSDEILSAEITKIQGKKPNKSDMSKA 117
L CL+H+ A MS R+ E I WS LSD + Q + P+ +++ +A
Sbjct: 245 LECLSHSAICAMHMS-RLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRA 303
Query: 118 R 118
+
Sbjct: 304 K 304
>gi|254781067|ref|YP_003065480.1| elongation factor P [Candidatus Liberibacter asiaticus str. psy62]
Length = 189
Score = 24.3 bits (51), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 117 ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE----EQSKKLIEEA 172
RH++ T+++T K QT+ A + + + + H I D+ + +E
Sbjct: 128 PRHVVFTVIDTEPSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTEDNSYVERV 187
Query: 173 KK 174
KK
Sbjct: 188 KK 189
>gi|255764461|ref|YP_003064629.2| methionyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 511
Score = 23.9 bits (50), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 157 FAIADEEQSKKLIEEAKKSTLAS-IMLDNNEELKKAFYEILEISNDEDIET 206
F +E +K+ + A+ + + + + +D N + ++L+IS D+ I T
Sbjct: 47 FTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDDFIRT 97
>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 257
Score = 23.5 bits (49), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 48 LVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVL 83
+V+ VL +++ A T++C+TH A +++ RV+
Sbjct: 187 MVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVV 223
>gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62]
Length = 976
Score = 22.7 bits (47), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 90 SHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135
+ +S +LS E I + G+K N S + +L T L+ P G K +T
Sbjct: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647
>gi|254780618|ref|YP_003065031.1| F0F1 ATP synthase subunit delta [Candidatus Liberibacter asiaticus
str. psy62]
Length = 186
Score = 22.7 bits (47), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 193 YEILEISNDEDIETLISDIISNRTAL-----KLIFF----FFSYLWRRKIIE 235
+ + +SN+E + ++SD IS AL L FF FS RR +I+
Sbjct: 17 HSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVID 68
>gi|254780294|ref|YP_003064707.1| N-acetyl-gamma-glutamyl-phosphate reductase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 311
Score = 22.3 bits (46), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194
+I Q++ + NI S + E+S+K+ T+A M+ N++L F++
Sbjct: 233 SIFQEYYMGQNIVS---VVPLEESRKI------KTIACEMMSGNDKLHLFFFD 276
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.129 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,817
Number of Sequences: 1233
Number of extensions: 4998
Number of successful extensions: 29
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 20
length of query: 242
length of database: 328,796
effective HSP length: 71
effective length of query: 171
effective length of database: 241,253
effective search space: 41254263
effective search space used: 41254263
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 37 (18.9 bits)