BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 537021.9.peg.409_1 (242 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >537021.9.peg.409_1 Length = 242 Score = 489 bits (1260), Expect = e-140, Method: Compositional matrix adjust. Identities = 242/242 (100%), Positives = 242/242 (100%) Query: 1 MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60 MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA Sbjct: 1 MIYHNSFQEHSETIDLISQTKSEQLLASDPTRSAWVSANAGSGKTHILVQRVLRLLLANA 60 Query: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL Sbjct: 61 HPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEILSAEITKIQGKKPNKSDMSKARHL 120 Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI Sbjct: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWS 240 MLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWS Sbjct: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNRTALKLIFFFFSYLWRRKIIEKSLWS 240 Query: 241 IA 242 IA Sbjct: 241 IA 242 >gi|254780952|ref|YP_003065365.1| DNA helicase II [Candidatus Liberibacter asiaticus str. psy62] Length = 685 Score = 44.3 bits (103), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 64/150 (42%), Gaps = 45/150 (30%) Query: 38 ANAGSGKTHILVQRVLRLLL-ANAHPSTLLCLTHTKAAAAEMSHRVLEIITAWSHLSDEI 96 A AG+GKT +L+ R+L L+ PS +L +T T A EM +R+ +L ++I Sbjct: 50 AGAGTGKTTVLIARMLHLICHKEIPPSKILAMTFTNQAIQEMKNRLA------CYLGEKI 103 Query: 97 LSAEITKIQGKKPNKSDMSKARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSH 156 ++QT H+FC +I+++ + + Sbjct: 104 ----------------------------------PRIQTFHSFCASILRKHGEVVGLPTD 129 Query: 157 FAIADEEQSKKLIEEAKKSTLASIMLDNNE 186 FAI D +S+ +I K L + +D+ + Sbjct: 130 FAILDSAESRTII----KQLLKDLQIDDKD 155 >gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus Liberibacter asiaticus str. psy62] Length = 542 Score = 26.6 bits (57), Expect = 0.38, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 18/96 (18%) Query: 121 LITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASI 180 LI + GG+ + H A Q F ++ N TS A E+Q++ + EE+KK T Sbjct: 97 LIRKYKASGGIILTASHNPAGA-TQDFGIKYN-TSSGGSASEQQTEDIFEESKKITS--- 151 Query: 181 MLDNNEELKKAFYEILEISNDEDIETLISDIISNRT 216 Y+I+E +ND DI + + ++N T Sbjct: 152 ------------YQIIE-ANDVDINHIGTKELANMT 174 >gi|254780370|ref|YP_003064783.1| argininosuccinate lyase [Candidatus Liberibacter asiaticus str. psy62] Length = 473 Score = 26.2 bits (56), Expect = 0.51, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 8/61 (13%) Query: 65 LLCLTHTKAAAAEMSHRVLEIITAWS-------HLSDEILSAEITKIQGKKPNKSDMSKA 117 L CL+H+ A MS R+ E I WS LSD + Q + P+ +++ +A Sbjct: 245 LECLSHSAICAMHMS-RLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRA 303 Query: 118 R 118 + Sbjct: 304 K 304 >gi|254781067|ref|YP_003065480.1| elongation factor P [Candidatus Liberibacter asiaticus str. psy62] Length = 189 Score = 24.3 bits (51), Expect = 1.8, Method: Compositional matrix adjust. Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 4/62 (6%) Query: 117 ARHLLITILETPGGLKVQTIHAFCEAIMQQFPLEANITSHFAIADE----EQSKKLIEEA 172 RH++ T+++T K QT+ A + + + + H I D+ + +E Sbjct: 128 PRHVVFTVIDTEPSSKGQTVTASYKPAILSNDIRTTVPPHINIGDDIVILTEDNSYVERV 187 Query: 173 KK 174 KK Sbjct: 188 KK 189 >gi|255764461|ref|YP_003064629.2| methionyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 511 Score = 23.9 bits (50), Expect = 3.0, Method: Compositional matrix adjust. Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query: 157 FAIADEEQSKKLIEEAKKSTLAS-IMLDNNEELKKAFYEILEISNDEDIET 206 F +E +K+ + A+ + + + + +D N + ++L+IS D+ I T Sbjct: 47 FTTGTDEHGQKIAKAAQNAGVTTKVFVDQNSRNFRDMADVLDISYDDFIRT 97 >gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 23.5 bits (49), Expect = 3.3, Method: Compositional matrix adjust. Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Query: 48 LVQRVLRLLLANAHPS-TLLCLTHTKAAAAEMSHRVL 83 +V+ VL +++ A T++C+TH A +++ RV+ Sbjct: 187 MVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVV 223 >gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] Length = 976 Score = 22.7 bits (47), Expect = 5.4, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%) Query: 90 SHLSDEILSAE--ITKIQGKKPNKSDMSKARHLLITILETPGGLKVQT 135 + +S +LS E I + G+K N S + +L T L+ P G K +T Sbjct: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 >gi|254780618|ref|YP_003065031.1| F0F1 ATP synthase subunit delta [Candidatus Liberibacter asiaticus str. psy62] Length = 186 Score = 22.7 bits (47), Expect = 6.2, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 9/52 (17%) Query: 193 YEILEISNDEDIETLISDIISNRTAL-----KLIFF----FFSYLWRRKIIE 235 + + +SN+E + ++SD IS AL L FF FS RR +I+ Sbjct: 17 HSLFGVSNEEGVLDIVSDDISRLEALLMESADLRFFIHNPLFSMKDRRSVID 68 >gi|254780294|ref|YP_003064707.1| N-acetyl-gamma-glutamyl-phosphate reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 311 Score = 22.3 bits (46), Expect = 8.1, Method: Compositional matrix adjust. Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 9/53 (16%) Query: 142 AIMQQFPLEANITSHFAIADEEQSKKLIEEAKKSTLASIMLDNNEELKKAFYE 194 +I Q++ + NI S + E+S+K+ T+A M+ N++L F++ Sbjct: 233 SIFQEYYMGQNIVS---VVPLEESRKI------KTIACEMMSGNDKLHLFFFD 276 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.129 0.360 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 141,817 Number of Sequences: 1233 Number of extensions: 4998 Number of successful extensions: 29 Number of sequences better than 100.0: 18 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 20 Number of HSP's gapped (non-prelim): 20 length of query: 242 length of database: 328,796 effective HSP length: 71 effective length of query: 171 effective length of database: 241,253 effective search space: 41254263 effective search space used: 41254263 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 37 (18.9 bits)