HHsearch alignment for GI: peg_410 and conserved domain: PRK11773

>PRK11773 uvrD DNA-dependent helicase II; Provisional.
Probab=100.00  E-value=0  Score=626.00  Aligned_cols=438  Identities=24%  Similarity=0.304  Sum_probs=339.5

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf             99999999999999998699775899999999831584248999998617989998071019999999999984100246
Q 537021.9.peg.4  127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG  206 (952)
Q Consensus       127 ~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~~  206 (952)
T Consensus       167 ~~~~~~iy~~Y~~~~~~~~~lDFdDll~~~~~ll~~~~~---v~~~~~~rf~~IlVDEfQDtn~~Q~~ll~~La~-----  238 (722)
T PRK11773        167 EQTWLKIYQAYQEACDRAGLVDFAELLLRAHELWLDKPH---ILQHYQERFRHILVDEFQDTNAIQYAWIRLLAG-----  238 (722)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH---HHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHC-----
T ss_conf             999999999999999876998889999999998621999---999998539799997723599999999998617-----


Q ss_pred             CCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             76667686499996665676542488847899999996652134576531200686668878999999999711210012
Q 537021.9.peg.4  207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG  286 (952)
Q Consensus       207 ~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~~~~~  286 (952)
T Consensus       239 -----~~~nl~vVGD~dQSIY~FRGA~~~~i~~f~~~f~~--------~~~i~L~~NyRSt~~Il~~an~li~~n~~r~~  305 (722)
T PRK11773        239 -----DTGNVMIVGDDDQSIYGWRGAQVENIQRFLKDFPG--------AETIRLEQNYRSTANILKAANALIANNSGRLG  305 (722)
T ss_pred             -----CCCCEEEEECCCHHHHHHCCCCHHHHHHHHHHCCC--------CEEEECCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             -----89728999674021133305636789999874477--------62786144416665799999999863245555


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             33221222122334478887436511344432233431011111000111333368889999999999998358622125
Q 537021.9.peg.4  287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG  366 (952)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~I~~l~~~~~~~~~~  366 (952)
T Consensus       306 k~l~~---------~~~~g~~i~~~~--------------------------~~~~~~Ea~~Ia~~I~~~~~~g------  344 (722)
T PRK11773        306 KELWT---------DGGDGEPISLYC--------------------------AFNELDEARFVVERIKQWQDNG------  344 (722)
T ss_pred             CCCCC---------CCCCCCCEEEEE--------------------------CCCHHHHHHHHHHHHHHHHHCC------
T ss_conf             50024---------577898605880--------------------------6997899999999999998738------


Q ss_pred             CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCC
Q ss_conf             43687824468986153101224899999874169736604862112331052268768887481311024543058774
Q 537021.9.peg.4  367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF  446 (952)
Q Consensus       367 ~~r~~~~~diaVL~r~~~~~~~~~~~l~al~~~~~ip~~~~~~~~~~~~~~v~~l~a~l~~l~~p~~~~~~~~~L~spl~  446 (952)
T Consensus       345 ----~~~~diAIL~Rtn~~~~~le~aL----~~~gIPy~i~gg~~f~~r~eikd~la~Lrl~~np~d~~al~ril~~P~r  416 (722)
T PRK11773        345 ----GALSDCAILYRSNAQSRVLEEAL----LQAGIPYRIYGGMRFFERQEIKDALAYLRLIANRNDDAAFERVVNTPTR  416 (722)
T ss_pred             ----CCCCCEEEEEECCHHHHHHHHHH----HHCCCCEEEECCCCHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
T ss_conf             ----98101257751216467899999----8659984874671011359999999998763485434999999828445


Q ss_pred             CCCHHHHHHHHHH-CCCCCCHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHH
Q ss_conf             7888899998730-1268657888764311------11589999999999999864219989999999850346999981
Q 537021.9.peg.4  447 NFSEDDIFKICTQ-RHETETVYEYIQKFAN------CGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFIS  519 (952)
Q Consensus       447 g~~~~~l~~l~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  519 (952)
T Consensus       417 gig~~~l~~l~~~a~~~~~sl~~~~~~~~~~~~l~~~~~~~l~~f~~li~~l~~~~~~~~l~~~~~~i~~~~gl~~~~~~  496 (722)
T PRK11773        417 GIGDRTLDVVRQTARDRQLTLWQACRALLQEKVLAGRAASALQRFIELIDALAQETADMPLHEQTDRVIKDSGLRAMYEQ  496 (722)
T ss_pred             CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHH
T ss_conf             88976899999999973998999999987546568889999999999999999875149999999999996578999973


Q ss_pred             CC---CHHHHHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECHHHCCCCCCCEEEECC
Q ss_conf             13---523899999999999998520----56898999998850100132112357885303001221456777799815
Q 537021.9.peg.4  520 RF---GNEVIDVLDEFLNFTLRNEQN----SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVD  592 (952)
Q Consensus       520 ~~---~~~~~~~l~~l~~~a~~~e~~----~~~~l~~f~~~l~~~~~~~~~~~~~~~d~V~imTiH~SKGLEfpvV~i~~  592 (952)
T Consensus       497 ~~~~~~~~r~~nl~el~~~~~~f~~~~~~~~~~~L~~fL~~~~l~~~~--~~~~~~~d~V~LmTiH~AKGLEFp~Vfl~g  574 (722)
T PRK11773        497 EKGEKGQARIENLEELVTATRQFEYPDEDEDLTPLQAFLSHAALEAGE--GQADAHEDAVQLMTLHSAKGLEFPLVFLVG  574 (722)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC--CCCCCCCCEEEEEEEECCCCCCCCEEEEEC
T ss_conf             146537999999999999999986402334426799999999863376--434567882899961202686677689806


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf             887767765444222344555666631235444578747799999997644446788787511466528999831677
Q 537021.9.peg.4  593 TGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT  670 (952)
Q Consensus       593 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~RLlYVAlTRAk~~L~l~~~~~~  670 (952)
T Consensus       575 l~eg~fP~~~s~~----------------------------------~~~~leEERRLfYVaiTRAk~~L~ls~~~~r  618 (722)
T PRK11773        575 MEEGLFPSQMSLE----------------------------------EGGRLEEERRLAYVGITRAMQKLTLTYAESR  618 (722)
T ss_pred             CCCCCCCCCCCCC----------------------------------CCCCHHHHHHHHHHHHHHHHHHEEEEECCHH
T ss_conf             6179888633468----------------------------------9751089999999989887452488551254