HHsearch alignment for GI: peg_410 and conserved domain: TIGR00372
>TIGR00372 cas4 CRISPR-associated protein Cas4; InterPro: IPR013343 This entry consists of conserved proteins found in many prokaryotic genomes whose genes are associated with CRISPRs (Clustered, Regularly Interspaced Short Palidromic Repeats). The function of these proteins has not been experimentally determined, but computational analysis suggests that they be nucleases like RecB (IPR004586 from INTERPRO), functioning as part of a hypothetical DNA repair system , . .
Probab=98.11 E-value=3.6e-05 Score=53.92 Aligned_cols=90 Identities=21% Similarity=0.244 Sum_probs=63.2
Q ss_pred EECCCCCE--EEEEEEEEEEEECC------EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE----EE
Q ss_conf 62388858--99979778999799------89999725801389998999998899999999999996799827----89
Q 537021.9.peg.4 855 INCPKKDI--IISGRIDQISISQQ------NIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSL----VC 922 (952)
Q Consensus 855 ~~~~~~~~--~i~G~IDri~~~~~------~~~IiDyKT~~~~~~~~~~~~~~Y~~QL~~Y~~al~~~~p~~~V----~~ 922 (952)
T Consensus 67 v~l~~~~~g~~l~G~~D~~~~~~~~~~~g~~~~pvE~K~~~~~~~~~~~~~~~~~~Ql~aYa~~~~~~~-~~~~~~i~~~ 145 (206)
T TIGR00372 67 VELKSKKYGKGLKGVIDVVLEEDGEIGKGAEPVPVEVKSGKAKKRLLRERGLAHKLQLLAYALLLEERY-GVEVSDIVKG 145 (206)
T ss_pred EEECCCCCCCEEECCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CCCHHHHHEE
T ss_conf 453278546415401478986156444652012676762446677643565235789999999985521-8430060022
Q ss_pred EEEECCCCEEE---ECCHHHHHHHHH
Q ss_conf 99985598789---879899999999
Q 537021.9.peg.4 923 LLIYVSEPKVF---IIPQNKLNKAFA 945 (952)
Q Consensus 923 ~l~y~~~~~~~---~~~~~~l~~~~~ 945 (952)
T Consensus 146 ~~~y~~~~~~~y~v~~~~~~~k~~~~ 171 (206)
T TIGR00372 146 YLLYLEEGKKVYEVEISEELRKKAVK 171 (206)
T ss_pred EEEEECCCEEEEEEEECHHHHHHHHH
T ss_conf 02563077389998628248999999