HHsearch alignment for GI: peg_410 and conserved domain: TIGR01074
>TIGR01074 rep ATP-dependent DNA helicase Rep; InterPro: IPR005752 RepA hexameric DNA helicase contain ATP-binding domains similar to those seen in monomeric helicases but which are arranged in a ring. There is compelling evidence to suggest that a single ssDNA molecule passes through the centre of the hexameric ring. Activity of the enzyme is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilizing the duplex and separating the two strands in an active process ; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=604.48 Aligned_cols=438 Identities=23% Similarity=0.347 Sum_probs=362.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999998699775899999999831584248999998617989998071019999999999984100246
Q 537021.9.peg.4 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206 (952)
Q Consensus 127 ~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~~ 206 (952)
T Consensus 162 e~~~A~~Y~~Y~~~L~~yNalDFDDLI~lP~~LL~~n~~---V~~~WQ~kirYLLVDEyQDTN~sQY~L~KlLv~----- 233 (677)
T TIGR01074 162 EQTFAHVYARYQATLRAYNALDFDDLILLPVLLLQQNEE---VRNKWQNKIRYLLVDEYQDTNTSQYELVKLLVG----- 233 (677)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHH---HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC-----
T ss_conf 899999999999998770775422378899998514978---999988532200110234511799999887518-----
Q ss_pred CCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 76667686499996665676542488847899999996652134576531200686668878999999999711210012
Q 537021.9.peg.4 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 (952)
Q Consensus 207 ~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~~~~~ 286 (952)
T Consensus 234 -----~r~~FT~VGDDDQSIYsWRGA~peNL~~L~~DfP~--------LKvIKLEQNYRS~~RILkaAN~LI~NNpH~F~ 300 (677)
T TIGR01074 234 -----DRGNFTVVGDDDQSIYSWRGARPENLVLLKEDFPQ--------LKVIKLEQNYRSTSRILKAANILIANNPHVFE 300 (677)
T ss_pred -----CCCCEEEECCCCCCHHHHHCCCHHHHHHHHHCCCC--------CEEEEECCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf -----88535674156542432316677889898615864--------41650000666646699997677622742000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHH--HHHHCCCCCC
Q ss_conf 33221222122334478887436511344432233431011111000111333368889999999999--9983586221
Q 537021.9.peg.4 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTIS--NMIGTDTIFS 364 (952)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~I~--~l~~~~~~~~ 364 (952)
T Consensus 301 K~LfS~---------l~~Ge~~kVi--------------------------~~~NE~hEAEri~~ei~~~~~~~~~---- 341 (677)
T TIGR01074 301 KKLFSE---------LGEGEKIKVI--------------------------ECRNEEHEAERIAGEIIAHKLIDAK---- 341 (677)
T ss_pred CCHHHH---------HCCCCEEEEE--------------------------ECCCCHHHHHHHHHHHHHHHHCCCC----
T ss_conf 000010---------0169817888--------------------------5178631689999999999744687----
Q ss_pred CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCC
Q ss_conf 25436878244689861531012248999998741697366048621123310522687688874813110245430587
Q 537021.9.peg.4 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 (952)
Q Consensus 365 ~~~~r~~~~~diaVL~r~~~~~~~~~~~l~al~~~~~ip~~~~~~~~~~~~~~v~~l~a~l~~l~~p~~~~~~~~~L~sp 444 (952)
T Consensus 342 -----~~~Y~DyAILYRGNhQsr~lEk~L~----~~rIPY~lSGGtSFF~R~EiKDllsYlRLlvNPDDD~AFLRivn~P 412 (677)
T TIGR01074 342 -----KTQYKDYAILYRGNHQSRLLEKALQ----QNRIPYKLSGGTSFFSRAEIKDLLSYLRLLVNPDDDAAFLRIVNTP 412 (677)
T ss_pred -----CCCHHCEEEECCCHHHHHHHHHHHH----HCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHCEECCC
T ss_conf -----4630100023131254589999986----2689825357714346403777888765313799883420012589
Q ss_pred CCCCCHHHHHHHHHH-CCCCCCHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHH
Q ss_conf 747888899998730-126865788876------4311115899999999999998642199899999998503469999
Q 537021.9.peg.4 445 LFNFSEDDIFKICTQ-RHETETVYEYIQ------KFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517 (952)
Q Consensus 445 l~g~~~~~l~~l~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 517 (952)
T Consensus 413 kReIG~aTL~KL~~~A~~~~~Slf~A~~~~gl~~~L~~r~~~~L~~F~~wl~~i~~~~~~~e~~~~vr~l~~~i~YE~~L 492 (677)
T TIGR01074 413 KREIGSATLEKLGEYAAEKNKSLFEASFELGLLQTLSGRAYEKLQRFTDWLVEIRRQAERSEPIEAVRSLVEDIDYENWL 492 (677)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 88743056888999997407978899877648985136578889999999999999874038589999999861377898
Q ss_pred HHCCCHH-----HHHHHHHHHHHHHHH----HHCCC-CCHHHHHHHHHHCCCCCCC-CCCCCCCCCEEECHHHCCCCCCC
Q ss_conf 8113523-----899999999999998----52056-8989999988501001321-12357885303001221456777
Q 537021.9.peg.4 518 ISRFGNE-----VIDVLDEFLNFTLRN----EQNSY-SSLQELISELEQYPPTIKR-AHSANHNEVRIMTVHTAKGLESP 586 (952)
Q Consensus 518 ~~~~~~~-----~~~~l~~l~~~a~~~----e~~~~-~~l~~f~~~l~~~~~~~~~-~~~~~~d~V~imTiH~SKGLEfp 586 (952)
T Consensus 493 ~~~~~~~k~~e~r~~NV~~L~~W~~~~L~~~e~~~~~m~l~~~v~~ltLrd~lEr~~e~e~~~d~VqLMTLHASKGLEFp 572 (677)
T TIGR01074 493 YENSESPKAAEMRMKNVEDLFSWLKEMLEGDEEDGPEMNLEQVVQRLTLRDMLERKIEEEEESDQVQLMTLHASKGLEFP 572 (677)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCC
T ss_conf 85257811467768669999999999841788885234689999999875464177645477752013465510245563
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 79981588776776544422234455566663123544457874779999999764444678878751146652899983
Q 537021.9.peg.4 587 VVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICK 666 (952)
Q Consensus 587 vV~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~RLlYVAlTRAk~~L~l~~ 666 (952)
T Consensus 573 YVf~~G~EEGiLPH~~S-----------------------------------IeedNveEERRL~YVGITRA~~~L~~t~ 617 (677)
T TIGR01074 573 YVFLIGMEEGILPHQSS-----------------------------------IEEDNVEEERRLAYVGITRAKKELTFTY 617 (677)
T ss_pred CEEEEECCCCCCCCCCC-----------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 11566346664887554-----------------------------------4467601677766443369999999999
Q ss_pred CC
Q ss_conf 16
Q 537021.9.peg.4 667 HS 668 (952)
Q Consensus 667 ~~ 668 (952)
T Consensus 618 c~ 619 (677)
T TIGR01074 618 CK 619 (677)
T ss_pred HH
T ss_conf 99