HHsearch alignment for GI: peg_410 and conserved domain: TIGR01447
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=95.58 E-value=0.029 Score=32.83 Aligned_cols=54 Identities=31% Similarity=0.457 Sum_probs=39.1
Q ss_pred CCCEEECHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85303001221456777799815887767765444222344555666631235444578747799999997644446788
Q 537021.9.peg.4 570 NEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNR 649 (952)
Q Consensus 570 d~V~imTiH~SKGLEfpvV~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~R 649 (952)
T Consensus 679 et~famTvHKSQGSEf~~v~li------LP~~~S~~L----------------------------------------~~e 712 (753)
T TIGR01447 679 ETAFAMTVHKSQGSEFDHVALI------LPNEESPVL----------------------------------------TRE 712 (753)
T ss_pred CEEEEEEEEECCCCEEEEEEEE------CCCCCCCCC----------------------------------------CHH
T ss_conf 0588998760557604035675------658988755----------------------------------------545
Q ss_pred HHHHHCCCCCCEEEEEECCC
Q ss_conf 78751146652899983167
Q 537021.9.peg.4 650 LLYVGMTRASDQLIICKHSN 669 (952)
Q Consensus 650 LlYVAlTRAk~~L~l~~~~~ 669 (952)
T Consensus 713 llYTgiTRAk~~l~v~~d~~ 732 (753)
T TIGR01447 713 LLYTGITRAKKQLSVVSDKE 732 (753)
T ss_pred HHHHHHHHHCCEEEEEECCH
T ss_conf 66653342044677876626