HHsearch alignment for GI: peg_410 and conserved domain: TIGR02768
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA; InterPro: IPR014136 This entry represents the Ti-type conjugative transfer relaxase TraA. TraA contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, IPR005053 from INTERPRO) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, IPR014129 from INTERPRO). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer ..
Probab=96.30 E-value=0.0023 Score=40.91 Aligned_cols=158 Identities=15% Similarity=0.164 Sum_probs=81.0
Q ss_pred CCEEEEECHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHH--HHHH---HCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 989998071019999999999984100246766676864999966656--7654---24888478999999966521345
Q 537021.9.peg.4 177 INHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ--SIYS---FHGAEPKRVLREKRINQKRATNA 251 (952)
Q Consensus 177 ~~~ilVDEfQDT~~~Q~~il~~L~~~~~~~~~~~~~~~~l~~VGD~kQ--SIY~---FRGAd~~~~~~~~~~f~~~~~~~ 251 (952)
T Consensus 502 ~dvLviDEAGMV~S~Qm~r~l~~A~~---------AGaKvVLvGD~~QLqaI~AGaaFRa--------ia~r-------- 556 (888)
T TIGR02768 502 KDVLVIDEAGMVGSRQMARVLKEAEE---------AGAKVVLVGDPEQLQAIEAGAAFRA--------IAER-------- 556 (888)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHH---------CCCCEEEECCHHHHCHHHCCCCCHH--------HHHH--------
T ss_conf 76689851544146778899999987---------2760598488578244244750012--------3410--------
Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf 76531200686668878999999999711210012332212221223344788874365113444322334310111110
Q 537021.9.peg.4 252 GQKFSIIELPLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTS 331 (952)
Q Consensus 252 ~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~ 331 (952)
T Consensus 557 ---iG~~El~~vrRQre~W~R~As~~LArG~v~~aL~aY------------~~~G~i----------------------- 598 (888)
T TIGR02768 557 ---IGYAELETVRRQREAWARQASLELARGEVEEALAAY------------RDHGHI----------------------- 598 (888)
T ss_pred ---CCEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHH------------HHCCCE-----------------------
T ss_conf ---140325464100248889998975278878999999------------863944-----------------------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCC
Q ss_conf 001113333688899999999999983586221-2543687824468986153101224899999874169
Q 537021.9.peg.4 332 YFDSLPQESSASILARRIAYTISNMIGTDTIFS-NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYK 401 (952)
Q Consensus 332 ~~~~~~~~~~~~~~a~~i~~~I~~l~~~~~~~~-~~~~r~~~~~diaVL~r~~~~~~~~~~~l~al~~~~~ 401 (952)
T Consensus 599 ----~~~~tr~~A~~~~vadw~~d~~~~~~~~t~eGrdGrlrGdeli~LAH~r~DVr~LN~~~RE~l~~~~ 665 (888)
T TIGR02768 599 ----TIADTREEAIEQVVADWKEDRREANQEETREGRDGRLRGDELIILAHTRKDVRALNEAAREALKERG 665 (888)
T ss_pred ----EEECCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHCC
T ss_conf ----3531478999999999999874015000213456542411210003205899999999999987466