HHsearch alignment for GI: peg_410 and conserved domain: pfam00580

>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=100.00  E-value=0  Score=428.90  Aligned_cols=321  Identities=26%  Similarity=0.323  Sum_probs=260.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999986997758999999998315842489999986179899980710199999999999841002
Q 537021.9.peg.4  125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF  204 (952)
Q Consensus       125 ~l~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~  204 (952)
T Consensus       164 ~~~~~~~~~~~~y~~~~~~~~~~Df~Dll~~~~~lL~~~~~---~~~~~~~r~~~ilVDEfQDtn~~Q~~il~~L~~---  237 (494)
T pfam00580       164 PRDKLAAEFYQEYQERLKENNALDFDDLLLLTLELLRSDPE---LLEAYRERFKYILVDEFQDTNPIQYELLKLLAG---  237 (494)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH---HHHHHHHHCCEEECHHHCCCHHHHHHHHHHHHC---
T ss_conf             58999999999999999986998989999999999731999---999998607265403430264999999999865---


Q ss_pred             CCCCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             46766676864999966656765424888478999999966521345765312006866688789999999997112100
Q 537021.9.peg.4  205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA  284 (952)
Q Consensus       205 ~~~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~~~  284 (952)
T Consensus       238 -------~~~~l~~VGD~~QSIY~FRGAd~~~~~~f~~~~~~--------~~~i~L~~NyRS~~~Il~~aN~l~~~~~~~  302 (494)
T pfam00580       238 -------GHPNLFLVGDPDQSIYGFRGADIENILKFEKDFPA--------AKVITLEQNYRSTPEILNAANKLISNNTAR  302 (494)
T ss_pred             -------CCCEEEEEECCCEEEEECCCCCHHHHHHHHHHCCC--------CCEEECCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             -------89839998179714420179996999999986665--------667258899898878999999999726022


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             12332212221223344788874365113444322334310111110001113333688899999999999983586221
Q 537021.9.peg.4  285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS  364 (952)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~I~~l~~~~~~~~  364 (952)
T Consensus       303 ~~~~~l-------~~-~~~~~~~v~~~~--------------------------~~~~~~Ea~~ia~~I~~l~~~~~---  345 (494)
T pfam00580       303 KEKRLL-------WS-QKGSGEKVTVYE--------------------------AETEQEEAEFIADEIKALHKSGA---  345 (494)
T ss_pred             CCCCCC-------CC-CCCCCCCEEEEE--------------------------CCCHHHHHHHHHHHHHHHHHCCC---
T ss_conf             445435-------45-578899607983--------------------------79999999999999999987799---


Q ss_pred             CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCC
Q ss_conf             25436878244689861531012248999998741697366048621123310522687688874813110245430587
Q 537021.9.peg.4  365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP  444 (952)
Q Consensus       365 ~~~~r~~~~~diaVL~r~~~~~~~~~~~l~al~~~~~ip~~~~~~~~~~~~~~v~~l~a~l~~l~~p~~~~~~~~~L~sp  444 (952)
T Consensus       346 -----~~~~~DiAIL~R~~~~~~~l~~~L----~~~gIP~~~~~~~~f~~~~ev~dlla~Lr~i~np~d~~al~rvl~~P  416 (494)
T pfam00580       346 -----AIPFGDIAVLVRSNSQSRAIEEAL----LKAGIPYKILGGLSFFDRKEIKDLLALLRLIDNPKDDLALLRILNTP  416 (494)
T ss_pred             -----CCCCCCEEEEEECCHHHHHHHHHH----HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
T ss_conf             -----988565689982523189999999----97799989989842001899999999999876988689999998148


Q ss_pred             CCCCCHHHHHHHHHH-CCCCCCHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf             747888899998730-126865788876431--------11158999999999999986421998999999985034
Q 537021.9.peg.4  445 LFNFSEDDIFKICTQ-RHETETVYEYIQKFA--------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK  512 (952)
Q Consensus       445 l~g~~~~~l~~l~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~  512 (952)
T Consensus       417 ~~g~~~~~l~~l~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l~~f~~~~~~~r~~~~~~~~~~l~~~i~~~tg  493 (494)
T pfam00580       417 KRGIGPTTLDKLRNLAKDRQISLFKALNQLLEKLNELLSARAYKKLLLFLALIEELEKLLLEILLEALLDEVLELLG  493 (494)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf             78989999999999998759999999999986301326989999999999999999997643999999999998619