HHsearch alignment for GI: peg_410 and conserved domain: pfam00580
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=100.00 E-value=0 Score=428.90 Aligned_cols=321 Identities=26% Similarity=0.323 Sum_probs=260.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999986997758999999998315842489999986179899980710199999999999841002
Q 537021.9.peg.4 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204 (952)
Q Consensus 125 ~l~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~ 204 (952)
T Consensus 164 ~~~~~~~~~~~~y~~~~~~~~~~Df~Dll~~~~~lL~~~~~---~~~~~~~r~~~ilVDEfQDtn~~Q~~il~~L~~--- 237 (494)
T pfam00580 164 PRDKLAAEFYQEYQERLKENNALDFDDLLLLTLELLRSDPE---LLEAYRERFKYILVDEFQDTNPIQYELLKLLAG--- 237 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH---HHHHHHHHCCEEECHHHCCCHHHHHHHHHHHHC---
T ss_conf 58999999999999999986998989999999999731999---999998607265403430264999999999865---
Q ss_pred CCCCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 46766676864999966656765424888478999999966521345765312006866688789999999997112100
Q 537021.9.peg.4 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 (952)
Q Consensus 205 ~~~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~~~ 284 (952)
T Consensus 238 -------~~~~l~~VGD~~QSIY~FRGAd~~~~~~f~~~~~~--------~~~i~L~~NyRS~~~Il~~aN~l~~~~~~~ 302 (494)
T pfam00580 238 -------GHPNLFLVGDPDQSIYGFRGADIENILKFEKDFPA--------AKVITLEQNYRSTPEILNAANKLISNNTAR 302 (494)
T ss_pred -------CCCEEEEEECCCEEEEECCCCCHHHHHHHHHHCCC--------CCEEECCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf -------89839998179714420179996999999986665--------667258899898878999999999726022
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 12332212221223344788874365113444322334310111110001113333688899999999999983586221
Q 537021.9.peg.4 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 (952)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~I~~l~~~~~~~~ 364 (952)
T Consensus 303 ~~~~~l-------~~-~~~~~~~v~~~~--------------------------~~~~~~Ea~~ia~~I~~l~~~~~--- 345 (494)
T pfam00580 303 KEKRLL-------WS-QKGSGEKVTVYE--------------------------AETEQEEAEFIADEIKALHKSGA--- 345 (494)
T ss_pred CCCCCC-------CC-CCCCCCCEEEEE--------------------------CCCHHHHHHHHHHHHHHHHHCCC---
T ss_conf 445435-------45-578899607983--------------------------79999999999999999987799---
Q ss_pred CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCC
Q ss_conf 25436878244689861531012248999998741697366048621123310522687688874813110245430587
Q 537021.9.peg.4 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 (952)
Q Consensus 365 ~~~~r~~~~~diaVL~r~~~~~~~~~~~l~al~~~~~ip~~~~~~~~~~~~~~v~~l~a~l~~l~~p~~~~~~~~~L~sp 444 (952)
T Consensus 346 -----~~~~~DiAIL~R~~~~~~~l~~~L----~~~gIP~~~~~~~~f~~~~ev~dlla~Lr~i~np~d~~al~rvl~~P 416 (494)
T pfam00580 346 -----AIPFGDIAVLVRSNSQSRAIEEAL----LKAGIPYKILGGLSFFDRKEIKDLLALLRLIDNPKDDLALLRILNTP 416 (494)
T ss_pred -----CCCCCCEEEEEECCHHHHHHHHHH----HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
T ss_conf -----988565689982523189999999----97799989989842001899999999999876988689999998148
Q ss_pred CCCCCHHHHHHHHHH-CCCCCCHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 747888899998730-126865788876431--------11158999999999999986421998999999985034
Q 537021.9.peg.4 445 LFNFSEDDIFKICTQ-RHETETVYEYIQKFA--------NCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKK 512 (952)
Q Consensus 445 l~g~~~~~l~~l~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 512 (952)
T Consensus 417 ~~g~~~~~l~~l~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~l~~f~~~~~~~r~~~~~~~~~~l~~~i~~~tg 493 (494)
T pfam00580 417 KRGIGPTTLDKLRNLAKDRQISLFKALNQLLEKLNELLSARAYKKLLLFLALIEELEKLLLEILLEALLDEVLELLG 493 (494)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 78989999999999998759999999999986301326989999999999999999997643999999999998619