HHsearch alignment for GI: peg_410 and conserved domain: pfam01443

>pfam01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase. Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.
Probab=94.18  E-value=0.062  Score=30.48  Aligned_cols=51  Identities=35%  Similarity=0.362  Sum_probs=36.6

Q ss_pred             CCEEECHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             53030012214567777998158877677654442223445556666312354445787477999999976444467887
Q 537021.9.peg.4  571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL  650 (952)
Q Consensus       571 ~V~imTiH~SKGLEfpvV~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~RL  650 (952)
T Consensus       175 ~~~~~tv~e~qG~tf~~V~l~~~~~~~~--------------------------------------------~~~~~~~~  210 (226)
T pfam01443       175 GVRATTVHEVQGLTFDSVTLVLDKDTDL--------------------------------------------LSISDPEL  210 (226)
T ss_pred             CCCCCCHHHCEEEECCCEEEEECCCCCC--------------------------------------------CCCCCCCC
T ss_conf             9982025576267716099997889865--------------------------------------------43358676


Q ss_pred             HHHHCCCCCCEEEEE
Q ss_conf             875114665289998
Q 537021.9.peg.4  651 LYVGMTRASDQLIIC  665 (952)
Q Consensus       651 lYVAlTRAk~~L~l~  665 (952)
T Consensus       211 ~~VALTRh~~~l~i~  225 (226)
T pfam01443       211 LYVALTRHRKSLHIL  225 (226)
T ss_pred             EEEEEECCCCEEEEE
T ss_conf             899825467678997