HHsearch alignment for GI: peg_410 and conserved domain: pfam01443
>pfam01443 Viral_helicase1 Viral (Superfamily 1) RNA helicase. Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.
Probab=94.18 E-value=0.062 Score=30.48 Aligned_cols=51 Identities=35% Similarity=0.362 Sum_probs=36.6
Q ss_pred CCEEECHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 53030012214567777998158877677654442223445556666312354445787477999999976444467887
Q 537021.9.peg.4 571 EVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRL 650 (952)
Q Consensus 571 ~V~imTiH~SKGLEfpvV~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~RL 650 (952)
T Consensus 175 ~~~~~tv~e~qG~tf~~V~l~~~~~~~~--------------------------------------------~~~~~~~~ 210 (226)
T pfam01443 175 GVRATTVHEVQGLTFDSVTLVLDKDTDL--------------------------------------------LSISDPEL 210 (226)
T ss_pred CCCCCCHHHCEEEECCCEEEEECCCCCC--------------------------------------------CCCCCCCC
T ss_conf 9982025576267716099997889865--------------------------------------------43358676
Q ss_pred HHHHCCCCCCEEEEE
Q ss_conf 875114665289998
Q 537021.9.peg.4 651 LYVGMTRASDQLIIC 665 (952)
Q Consensus 651 lYVAlTRAk~~L~l~ 665 (952)
T Consensus 211 ~~VALTRh~~~l~i~ 225 (226)
T pfam01443 211 LYVALTRHRKSLHIL 225 (226)
T ss_pred EEEEEECCCCEEEEE
T ss_conf 899825467678997