HHsearch results for GI: peg_410 and protein with PDBid: 1uaa_A
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=0 Score=457.04 Aligned_cols=440 Identities=20% Similarity=0.296 Sum_probs=302.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999999999999999869977589999999983158424899999861798999807101999999999998410024
Q 537021.9.peg.4 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205 (952)
Q Consensus 126 l~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~ 205 (952)
.......+...|...+...+.+||+|++..+..++...+. ++..++.+|+||+||||||||++|++|+..++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~vDE~QD~~~~q~~l~~~l~~---- 232 (673)
T 1uaa_A 160 RDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQANEE---VRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVG---- 232 (673)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHH---HHHHHHTTCSEEEESCGGGCBHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHH---HHHHHHHHCEEEECCCHHHCCHHHHHHHHCCCC----
T ss_conf 8999999999999999981777815789999998620858---999998642477425134349888865430147----
Q ss_pred CCCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 67666768649999666567654248884789999999665213457653120068666887899999999971121001
Q 537021.9.peg.4 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 (952)
Q Consensus 206 ~~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~~~~ 285 (952)
.+.++++|||||||||+||||++..|..+...|+. .+.+.|++||||++.|++++|.+|..+....
T Consensus 233 ------~~~~l~~vGD~~QsIy~frga~~~~~~~~~~~~~~--------~~~~~L~~nyRs~~~I~~~~~~li~~~~~~~ 298 (673)
T 1uaa_A 233 ------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA--------LKVIKLEQNYRSSGRILKAANILIANNPHVF 298 (673)
T ss_dssp ------TTCCEEEECCGGGCCCGGGTBCTTHHHHHHHHSTT--------CEEECCCCBSSSCHHHHHHHHHHHHTSCCSS
T ss_pred ------CCCEEEEECCHHHHHHHHCCCCHHHHHHHHHCCCC--------CEEEECCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf ------88536762350355455337741221002201798--------7698687655888788899999986074111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 23322122212233447888743651134443223343101111100011133336888999999999999835862212
Q 537021.9.peg.4 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 (952)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~I~~l~~~~~~~~~ 365 (952)
...... .....+.+.... .......+..+...|.......
T Consensus 299 ~~~~~~---------~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~i~~~~~~~----- 338 (673)
T 1uaa_A 299 EKRLFS---------ELGYGAELKVLS--------------------------ANNEEHEAERVTGELIAHHFVN----- 338 (673)
T ss_dssp CCCCCB---------SSCCCCCBEEEE--------------------------CSSHHHHHHHHHHHHHHHHHHH-----
T ss_pred CCCCCC---------CCCCCCCCCCHH--------------------------CCCHHHHHHHHHHHHHHHHHCC-----
T ss_conf 000132---------124686522000--------------------------0104899988888876542025-----
Q ss_pred CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCC
Q ss_conf 54368782446898615310122489999987416973660486211233105226876888748131102454305877
Q 537021.9.peg.4 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445 (952)
Q Consensus 366 ~~~r~~~~~diaVL~r~~~~~~~~~~~l~al~~~~~ip~~~~~~~~~~~~~~v~~l~a~l~~l~~p~~~~~~~~~L~spl 445 (952)
...++||+||+|++.+...+...|. ..|||+...++..+++++++++++++|+++.+|.++.++..++.+|.
T Consensus 339 ----~~~~~~iavL~r~~~~~~~~~~~L~----~~~Ip~~~~~~~~~~~~~ei~~ll~~l~~~~~~~~~~~~~rll~~~~ 410 (673)
T 1uaa_A 339 ----KTQYKDYAILYRGNHQSRVFEKFLM----QNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPK 410 (673)
T ss_dssp ----CCCTTTEEEEESSSGGGTTHHHHHH----HTTCCEEESCCCCGGGCHHHHHHHHHHHHHHCTTCHHHHHHHSSTTC
T ss_pred ----CCCCCCEEEEECCHHHHHHHHHHHH----HCCCCEEEECCCCHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
T ss_conf ----6773214541002144899999999----77998899578650023999999999999809885699999982720
Q ss_pred CCCCHHHHHHHHHHCCCC-CCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHH
Q ss_conf 478888999987301268-657888764------3111158999999999999986421998999999985034699998
Q 537021.9.peg.4 446 FNFSEDDIFKICTQRHET-ETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 (952)
Q Consensus 446 ~g~~~~~l~~l~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 518 (952)
.++.......+....... ...+..... ...............+......... .+...+..............
T Consensus 411 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 489 (673)
T 1uaa_A 411 REIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAER-EPIAAVRDLIHGMDYESWLY 489 (673)
T ss_dssp CCCCHHHHHHHHHHHHHTTSCHHHHTTCTTHHHHSCSHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHH
T ss_conf 01355689999999987077577898876553100045677888899999999997523-84789999999863566666
Q ss_pred HC-C----CHHHHHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECHHHCCCCCCCEEE
Q ss_conf 11-3----523899999999999998520----56898999998850100132112357885303001221456777799
Q 537021.9.peg.4 519 SR-F----GNEVIDVLDEFLNFTLRNEQN----SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 (952)
Q Consensus 519 ~~-~----~~~~~~~l~~l~~~a~~~e~~----~~~~l~~f~~~l~~~~~~~~~~~~~~~d~V~imTiH~SKGLEfpvV~ 589 (952)
.. . ......++.++++.+..+... ...++..++.++...............|+|+|||||+|||||||+||
T Consensus 490 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~l~TiH~sKGLEfd~Vi 569 (673)
T 1uaa_A 490 ETSPSPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVY 569 (673)
T ss_dssp HHSSSHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHTTCCCCC---CCCCCSEEEEESTTTSSCCEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHCCCCEEE
T ss_conf 64114306999999999999999999841554532459999999986545542655566996899767653321589899
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 81588776776544422234455566663123544457874779999999764444678878751146652899983167
Q 537021.9.peg.4 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 (952)
Q Consensus 590 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~RLlYVAlTRAk~~L~l~~~~~ 669 (952)
|+|+.++.||+... ......+||+|||||||||||++|||++...
T Consensus 570 v~g~~~g~~P~~~~-----------------------------------~d~~~~eEErRL~YVA~TRAk~~L~l~~~~~ 614 (673)
T 1uaa_A 570 MVGMEEGFLPHQSS-----------------------------------IDEDNIDEERRLAYVGITRAQKELTFTLCKE 614 (673)
T ss_dssp ECCCBSSTTTTHHH-----------------------------------HTTTCCHHHHHHHHHHHHTEEEEEEEEECSS
T ss_pred EECCCCCCCCCCCC-----------------------------------CCCCCHHHHHHHHHHHHHHHHCEEEEEEECC
T ss_conf 96680799977545-----------------------------------8953288999999989987850789999551
Q ss_pred C
Q ss_conf 7
Q 537021.9.peg.4 670 T 670 (952)
Q Consensus 670 ~ 670 (952)
.
T Consensus 615 ~ 615 (673)
T 1uaa_A 615 R 615 (673)
T ss_dssp C
T ss_pred C
T ss_conf 5