HHsearch results for GI: peg_410 and protein with PDBid: 1w36_B

>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=100.00  E-value=0  Score=764.48  Aligned_cols=756  Identities=16%  Similarity=0.192  Sum_probs=460.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHC
Q ss_conf             89999999999999999998699775899999999831584248999998617989998071019999999999984100
Q 537021.9.peg.4  124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF  203 (952)
Q Consensus       124 ~~l~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~  203 (952)
                      ..+.+++..+.+.|.+.|+++|.+||+||++.+.++|.+++ .+.++.+++.+|+|||||||||||++||+||+.|+.+ 
T Consensus       326 ~~l~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~ll~~~~-~~~l~~~l~~r~~~ilVDEfQDTn~~Q~~il~~L~~~-  403 (1180)
T 1w36_B          326 LVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH-  403 (1180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTEECHHHHHHHHHHHHHSTT-HHHHHHHHHHHCSEEEECSGGGCCHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHCCEEEEEHHHCCHHHHHHHHHHHHHC-
T ss_conf             99999999999999999998399980999999999975212-6999999996398999961532399999999999716-


Q ss_pred             CCCCCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             24676667686499996665676542488847899999996652134576531200686668878999999999711210
Q 537021.9.peg.4  204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN  283 (952)
Q Consensus       204 ~~~~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~~  283 (952)
                             ..++++|+|||||||||+||||||.+|.++.+.+.          +.+.|++||||+++||+++|.+|.+...
T Consensus       404 -------~~~~~l~~VGDpkQSIY~FRgAd~~~~~~~~~~~~----------~~~~L~~N~RS~~~Il~~~N~lf~~~~~  466 (1180)
T 1w36_B          404 -------QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH----------AHYTLDTNWRSAPGMVNSVNKLFSQTDD  466 (1180)
T ss_dssp             -------CTTCEEEEEECGGGCCCGGGTCCHHHHHHHHHHCC----------CEEECCEETTSCHHHHHHHHHHHHSSSS
T ss_pred             -------CCCCEEEEEECCCCEEECCCCCCHHHHHHHHHHHH----------HHCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             -------89871899807865330335777799999987643----------4202442457748999999999972522


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-
Q ss_conf             0123322122212233447888743651134443223343101111100011133336888999999999999835862-
Q 537021.9.peg.4  284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI-  362 (952)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~I~~l~~~~~~-  362 (952)
                      ..........+  ..+.....  .....   .   .....+....+....+...........|+.++..|++++..+.. 
T Consensus       467 ~~~~~~~~~~~--~~~~~~~~--~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~I~~ll~~~~~~  536 (1180)
T 1w36_B          467 AFMFREIPFIP--VKSAGKNQ--ALRFV---F---KGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRG  536 (1180)
T ss_dssp             TTSSTTSCCCC--CEECGGGT--TEEEE---E---TTEEECSEEEEECCSSCCCTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCC--HHCCCCCC--CCCCC---C---CCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             11123345310--00025554--43324---6---666665420220466664310377789999999999999820011


Q ss_pred             ----CCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEE-ECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHH
Q ss_conf             ----2125436878244689861531012248999998741697366-04862112331052268768887481311024
Q 537021.9.peg.4  363 ----FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV-GNDRFILTDHLAIKDLMALGRFILSQEDDLSF  437 (952)
Q Consensus       363 ----~~~~~~r~~~~~diaVL~r~~~~~~~~~~~l~al~~~~~ip~~-~~~~~~~~~~~~v~~l~a~l~~l~~p~~~~~~  437 (952)
                          ......|+++++|||||||++++...+...|    ..+|||+. ..++.++++++++.+++++|+++.+|.++..+
T Consensus       537 ~~~~~~~~~~r~~~~~DIaILvR~~~~~~~i~~~L----~~~gIp~~~~~~~~~~~~~~ev~~ll~ll~~l~~p~~~~~l  612 (1180)
T 1w36_B          537 EALLMNGDDARPVRASDISVLVRSRQEAAQVRDAL----TLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTL  612 (1180)
T ss_dssp             CEEEEETTEEEECCGGGEEEEESSHHHHHHHHHHH----HTTTCCEEETTCCCBGGGSSHHHHHHHHHHHHTCTTSHHHH
T ss_pred             HHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHH----HHCCCCEEEECCCHHHHHCHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             12321454346778142799971537689999889----87499849946731364088999999999861484538999


Q ss_pred             HHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHH
Q ss_conf             54305877478888999987301268657888764311115899999999999998642199899999998503469999
Q 537021.9.peg.4  438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF  517 (952)
Q Consensus       438 ~~~L~spl~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  517 (952)
                      ..+|+||++|++..++..+....                  ..+....+.+..++.......+.++++.++........+
T Consensus       613 ~~~l~s~~~g~~~~~l~~l~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l  674 (1180)
T 1w36_B          613 RSALATSMMGLNALDIETLNNDE------------------HAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENL  674 (1180)
T ss_dssp             HHHHHSGGGTCCHHHHHHHHHCH------------------HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHCCCCCCCHHHHHHHHHCH------------------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf             99983734599999999984345------------------778999998999999998667089999999876799999


Q ss_pred             HHCCC-HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC-------CCCCCCCCCCCCCEEECHHHCCCCCCCEEE
Q ss_conf             81135-2389999999999999852056898999998850100-------132112357885303001221456777799
Q 537021.9.peg.4  518 ISRFG-NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP-------TIKRAHSANHNEVRIMTVHTAKGLESPVVF  589 (952)
Q Consensus       518 ~~~~~-~~~~~~l~~l~~~a~~~e~~~~~~l~~f~~~l~~~~~-------~~~~~~~~~~d~V~imTiH~SKGLEfpvV~  589 (952)
                      ....+ .....|+..+.+.+..+ .....++..|+.|+.....       .......++.++|+|||||+|||||||+||
T Consensus       675 ~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~imTiHkSKGLEfpvV~  753 (1180)
T 1w36_B          675 LATAGGERRLTDILHISELLQEA-GTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVW  753 (1180)
T ss_dssp             HHSSSHHHHHHHHHHHHHHHHHH-HTTCSCHHHHHHHHHHHHHSCCCCSTTBCCCCTTGGGSEEEEETTTTSSCCEEEEE
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEE
T ss_conf             86057689999999999999999-87423278999999999860121124554212203670689741541676678899


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf             81588776776544422234455566663123544457874779999999764444678878751146652899983167
Q 537021.9.peg.4  590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN  669 (952)
Q Consensus       590 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~RLlYVAlTRAk~~L~l~~~~~  669 (952)
                      ||+++++.++.......    . .......        ............+.+..+|++|||||||||||++|+|++...
T Consensus       754 v~~~~~~~~~~~~~~~~----~-~~~~~~~--------~~~~~~~~~~~~~~e~l~Ee~RLlYVAlTRAk~~L~l~~~~~  820 (1180)
T 1w36_B          754 LPFITNFRVQEQAFYHD----R-HSFEAVL--------DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPL  820 (1180)
T ss_dssp             ETTTTCCCCCCSCEEEC----T-TTCCEEE--------ESSCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCC
T ss_pred             EECCCCCCCCCCCCCCC----C-CCCCCCC--------CCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEEEEC
T ss_conf             93675677766666653----1-0100014--------655465677687899888887876304522335689998401


Q ss_pred             CCCCCCCCC--CCCHHHHHHCCCCCCCCCCCCC---CCCCCCCCCC--------CCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             777666543--2106887310356433222234---5444433222--------11012235544321000122221000
Q 537021.9.peg.4  670 TSNEKKSNQ--RTWYDMVYDSFHNDERVKKIKL---TNSINKDEWI--------AYEWSTHHPENTPLEREETIKQLMDE  736 (952)
Q Consensus       670 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~  736 (952)
                      .........  ......+...............   ..........        ................. ........
T Consensus       821 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  899 (1180)
T 1w36_B          821 VRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAK-TLQRLPGD  899 (1180)
T ss_dssp             CCSCSCCSSCCGGGGSHHHHHHTCSSCCCHHHHHHHHHHSCSTTEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC-CCCCCCCC
T ss_conf             33457766652556766788862677554146899888753776432245543233334565541121221-24556554


Q ss_pred             HHHHHHHCCCCCCC------CCCCCCCCHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             01124530334433------233423361110010015554446630155677999999985668996568999999985
Q 537021.9.peg.4  737 QKIPKKLFSPIKND------INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT  810 (952)
Q Consensus       737 ~~~~~~~~~~~~~~------~~~~~~l~~s~~~~~~~~~~~~~~~~~~a~~~Gt~vH~~lE~l~~~~~~~~~~~~~~~l~  810 (952)
                      ......+.......      ..................+.......+.|+.+||++|++||++++....+. ..+.+.+.
T Consensus       900 ~~~~~s~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ga~~Gt~~H~ilE~ldf~~~~~~-~~i~~~l~  978 (1180)
T 1w36_B          900 NWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP-NWVREKLE  978 (1180)
T ss_dssp             CEEEESSCSSSCSSCTTHHHHCTTSCTTCCCCCCSCCCSSCCGGGSCCSHHHHHHHHHHTTSCCSSSCCCH-HHHHHHHH
T ss_pred             CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCH-HHHHHHHH
T ss_conf             32203726664401345554454545553344210027767800147637689999999984899999999-99999998


Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHCCHH------HHHHHCCCCCCCEEEEEEEEC--------------------------C
Q ss_conf             00458998899999999999862965------578717778561137888623--------------------------8
Q 537021.9.peg.4  811 KNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINC--------------------------P  858 (952)
Q Consensus       811 ~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~Ev~~e~~~~~--------------------------~  858 (952)
                      ..  .........+.+.+..++..+.      +..+.......|++|..++..                          .
T Consensus       979 ~~--~~~~~~~~~~~~~l~~~l~~pL~~~~~~l~~~~~~~~~~E~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1056 (1180)
T 1w36_B          979 LG--GFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFM 1056 (1180)
T ss_dssp             HT--TCCGGGHHHHHHHHHHHHSSCSSSSSCCGGGCCGGGEEEEEEEEEEECSCCCHHHHHHHHHHHCSSTTSCCCCCSC
T ss_pred             HC--CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             54--9970225999999999980858776766544772021650153222562202888999997336300125432343


Q ss_pred             CCCEEEEEEEEEEEEECCEEEEEECCCCCCCCCC----HHH-----HHHHHHHHHHHHHHHHHHHC----CCCCE-----
Q ss_conf             8858999797789997998999972580138999----899-----99988999999999999967----99827-----
Q 537021.9.peg.4  859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE----IEH-----IPYTHIAQLSIYEKILKDSY----PNKSL-----  920 (952)
Q Consensus       859 ~~~~~i~G~IDri~~~~~~~~IiDyKT~~~~~~~----~~~-----~~~~Y~~QL~~Y~~al~~~~----p~~~V-----  920 (952)
                      ...++|+|+||++|.++|+++|||||||+..++.    .+.     ..++|..||.+|+.||+++.    |+...     
T Consensus      1057 ~~~g~l~G~IDlvf~~dg~~~IvDYKTd~lg~~~~~y~~~~l~~~m~~~~Y~lQ~~lY~~AL~r~L~~r~~~y~~~~h~G 1136 (1180)
T 1w36_B         1057 QVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFG 1136 (1180)
T ss_dssp             CCEEEEEEEEEEEEBSSSCBCCEEEECCCCCSSGGGSBHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHSSSCCHHHHCC
T ss_pred             CCEEEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCC
T ss_conf             54146999999999999999999727899899841029999999988786199999999999999707077987455178


Q ss_pred             EEEEEECCC--------CEEEECCHHHHHHHHHHHH
Q ss_conf             899998559--------8789879899999999765
Q 537021.9.peg.4  921 VCLLIYVSE--------PKVFIIPQNKLNKAFAEIS  948 (952)
Q Consensus       921 ~~~l~y~~~--------~~~~~~~~~~l~~~~~~~~  948 (952)
                      .++.+|+++        |-..+.|+.+|=.+|+++-
T Consensus      1137 g~~YlFlRG~~~~~~~~G~~~~~p~~~~i~~ld~l~ 1172 (1180)
T 1w36_B         1137 GVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 (1180)
T ss_dssp             CCEEEESSSCCTTCTTBSCCBCCCCSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHH
T ss_conf             279999479899999996685059999999999985