Query 537021.9.peg.410_1 Match_columns 952 No_of_seqs 254 out of 5600 Neff 9.9 Searched_HMMs 23785 Date Wed May 25 02:25:51 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_410.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1w36_B RECB, exodeoxyribonucle 100.0 0 0 764.5 53.0 756 124-948 326-1172(1180) 2 1pjr_A PCRA; DNA repair, DNA r 100.0 0 0 504.4 37.6 440 127-669 170-622 (724) 3 2is6_A DNA helicase II; hydrol 100.0 0 0 478.3 42.7 440 125-670 165-618 (680) 4 1uaa_A REP helicase, protein ( 100.0 0 0 457.0 43.9 440 126-670 160-615 (673) 5 1w36_C RECC, exodeoxyribonucle 100.0 2.1E-26 8.7E-31 206.3 36.7 543 340-946 380-1022(1122) 6 2gk6_A Regulator of nonsense t 99.7 2E-14 8.3E-19 119.5 18.0 87 174-282 337-430 (624) 7 2wjy_A Regulator of nonsense t 99.6 2.2E-13 9.4E-18 111.8 21.6 87 174-282 513-606 (800) 8 3dmn_A Putative DNA helicase; 99.5 9.5E-15 4E-19 121.8 6.2 56 569-668 99-154 (174) 9 3h4r_A Exodeoxyribonuclease 8; 99.3 1.4E-11 6E-16 98.8 8.0 188 756-948 12-232 (265) 10 3l0a_A Putative exonuclease; R 99.3 3.3E-10 1.4E-14 88.8 14.7 160 775-951 51-225 (266) 11 1w36_D RECD, exodeoxyribonucle 99.2 1.1E-11 4.7E-16 99.5 4.7 54 175-238 261-314 (608) 12 3e1s_A Exodeoxyribonuclease V, 98.7 3.4E-09 1.4E-13 81.6 3.1 81 175-280 278-361 (574) 13 3b85_A Phosphate starvation-in 97.0 0.0016 6.9E-08 40.3 6.7 79 178-275 124-204 (208) 14 3e1s_A Exodeoxyribonuclease V, 96.6 0.006 2.5E-07 36.3 6.7 47 575-667 494-540 (574) 15 2vld_A NUCS, UPF0286 protein p 96.0 0.02 8.2E-07 32.5 6.9 55 865-928 156-211 (251) 16 3dmn_A Putative DNA helicase; 95.5 0.064 2.7E-06 28.8 7.8 20 261-280 2-21 (174) 17 3e2i_A Thymidine kinase; Zn-bi 89.9 0.47 2E-05 22.6 5.1 37 174-220 99-135 (219) 18 1xx6_A Thymidine kinase; X-RAY 88.5 0.79 3.3E-05 20.9 5.4 49 169-227 74-125 (191) 19 2j9r_A Thymidine kinase; TK1, 86.8 0.8 3.4E-05 20.9 4.6 45 173-227 98-145 (214) 20 2orw_A Thymidine kinase; TMTK, 85.2 0.71 3E-05 21.3 3.7 44 173-226 73-119 (184) 21 2b8t_A Thymidine kinase; deoxy 75.2 2.5 0.0001 17.3 4.8 35 175-219 88-122 (223) 22 2orv_A Thymidine kinase; TP4A 58.4 5.2 0.00022 15.0 4.6 35 175-220 89-123 (234) 23 1w4r_A Thymidine kinase; type 55.8 5.7 0.00024 14.7 4.9 26 175-201 90-115 (195) 24 1cu1_A Protein (protease/helic 49.9 7 0.00029 14.1 3.7 19 211-229 42-60 (645) 25 2z4s_A Chromosomal replication 37.5 11 0.00044 12.8 7.0 22 646-667 214-235 (440) 26 2i4r_A V-type ATP synthase sub 35.3 11 0.00048 12.5 1.5 24 211-235 7-30 (102) 27 3llm_A ATP-dependent RNA helic 35.3 11 0.00048 12.5 3.6 19 193-222 67-85 (235) 28 1l8q_A Chromosomal replication 32.1 13 0.00054 12.2 6.3 83 147-240 71-156 (324) 29 3fov_A UPF0102 protein RPA0323 29.2 14 0.0006 11.8 7.3 62 865-928 50-116 (134) 30 2hwk_A Helicase NSP2; rossman 28.5 7 0.0003 14.0 -0.7 41 173-226 135-176 (320) 31 3kqn_A Serine protease/ntpase/ 23.9 17 0.00073 11.2 3.6 27 175-201 94-120 (437) 32 1ob8_A Holliday-junction resol 23.9 17 0.00073 11.2 1.8 28 861-888 31-58 (135) 33 2jok_A Putative G-nucleotide e 23.6 16 0.00067 11.5 0.3 13 219-231 3-15 (186) No 1 >1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B* Probab=100.00 E-value=0 Score=764.48 Aligned_cols=756 Identities=16% Similarity=0.192 Sum_probs=460.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHC Q ss_conf 89999999999999999998699775899999999831584248999998617989998071019999999999984100 Q 537021.9.peg.4 124 LASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDF 203 (952) Q Consensus 124 ~~l~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~ 203 (952) ..+.+++..+.+.|.+.|+++|.+||+||++.+.++|.+++ .+.++.+++.+|+|||||||||||++||+||+.|+.+ T Consensus 326 ~~l~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~ll~~~~-~~~l~~~l~~r~~~ilVDEfQDTn~~Q~~il~~L~~~- 403 (1180) T 1w36_B 326 LVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSES-GEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWHH- 403 (1180) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTEECHHHHHHHHHHHHHSTT-HHHHHHHHHHHCSEEEECSGGGCCHHHHHHHHHHHTT- T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHCCEEEEEHHHCCHHHHHHHHHHHHHC- T ss_conf 99999999999999999998399980999999999975212-6999999996398999961532399999999999716- Q ss_pred CCCCCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCC Q ss_conf 24676667686499996665676542488847899999996652134576531200686668878999999999711210 Q 537021.9.peg.4 204 FVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPEN 283 (952) Q Consensus 204 ~~~~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~~ 283 (952) ..++++|+|||||||||+||||||.+|.++.+.+. +.+.|++||||+++||+++|.+|.+... T Consensus 404 -------~~~~~l~~VGDpkQSIY~FRgAd~~~~~~~~~~~~----------~~~~L~~N~RS~~~Il~~~N~lf~~~~~ 466 (1180) T 1w36_B 404 -------QPETALLLIGDPKQAIYAFRGADIFTYMKARSEVH----------AHYTLDTNWRSAPGMVNSVNKLFSQTDD 466 (1180) T ss_dssp -------CTTCEEEEEECGGGCCCGGGTCCHHHHHHHHHHCC----------CEEECCEETTSCHHHHHHHHHHHHSSSS T ss_pred -------CCCCEEEEEECCCCEEECCCCCCHHHHHHHHHHHH----------HHCCCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf -------89871899807865330335777799999987643----------4202442457748999999999972522 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC- Q ss_conf 0123322122212233447888743651134443223343101111100011133336888999999999999835862- Q 537021.9.peg.4 284 AQGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTI- 362 (952) Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~I~~l~~~~~~- 362 (952) ..........+ ..+..... ..... . .....+....+....+...........|+.++..|++++..+.. T Consensus 467 ~~~~~~~~~~~--~~~~~~~~--~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~I~~ll~~~~~~ 536 (1180) T 1w36_B 467 AFMFREIPFIP--VKSAGKNQ--ALRFV---F---KGETQPAMKMWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRG 536 (1180) T ss_dssp TTSSTTSCCCC--CEECGGGT--TEEEE---E---TTEEECSEEEEECCSSCCCTTHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred CCCCCCCCCCC--HHCCCCCC--CCCCC---C---CCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 11123345310--00025554--43324---6---666665420220466664310377789999999999999820011 Q ss_pred ----CCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEE-ECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHH Q ss_conf ----2125436878244689861531012248999998741697366-04862112331052268768887481311024 Q 537021.9.peg.4 363 ----FSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVV-GNDRFILTDHLAIKDLMALGRFILSQEDDLSF 437 (952) Q Consensus 363 ----~~~~~~r~~~~~diaVL~r~~~~~~~~~~~l~al~~~~~ip~~-~~~~~~~~~~~~v~~l~a~l~~l~~p~~~~~~ 437 (952) ......|+++++|||||||++++...+...| ..+|||+. ..++.++++++++.+++++|+++.+|.++..+ T Consensus 537 ~~~~~~~~~~r~~~~~DIaILvR~~~~~~~i~~~L----~~~gIp~~~~~~~~~~~~~~ev~~ll~ll~~l~~p~~~~~l 612 (1180) T 1w36_B 537 EALLMNGDDARPVRASDISVLVRSRQEAAQVRDAL----TLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTL 612 (1180) T ss_dssp CEEEEETTEEEECCGGGEEEEESSHHHHHHHHHHH----HTTTCCEEETTCCCBGGGSSHHHHHHHHHHHHTCTTSHHHH T ss_pred HHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHH----HHCCCCEEEECCCHHHHHCHHHHHHHHHHHHHCCCCCHHHH T ss_conf 12321454346778142799971537689999889----87499849946731364088999999999861484538999 Q ss_pred HHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHH Q ss_conf 54305877478888999987301268657888764311115899999999999998642199899999998503469999 Q 537021.9.peg.4 438 VCMLKSPLFNFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517 (952) Q Consensus 438 ~~~L~spl~g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 517 (952) ..+|+||++|++..++..+.... ..+....+.+..++.......+.++++.++........+ T Consensus 613 ~~~l~s~~~g~~~~~l~~l~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l 674 (1180) T 1w36_B 613 RSALATSMMGLNALDIETLNNDE------------------HAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENL 674 (1180) T ss_dssp HHHHHSGGGTCCHHHHHHHHHCH------------------HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTHHHHH T ss_pred HHHHHCCCCCCCHHHHHHHHHCH------------------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH T ss_conf 99983734599999999984345------------------778999998999999998667089999999876799999 Q ss_pred HHCCC-HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC-------CCCCCCCCCCCCCEEECHHHCCCCCCCEEE Q ss_conf 81135-2389999999999999852056898999998850100-------132112357885303001221456777799 Q 537021.9.peg.4 518 ISRFG-NEVIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPP-------TIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 (952) Q Consensus 518 ~~~~~-~~~~~~l~~l~~~a~~~e~~~~~~l~~f~~~l~~~~~-------~~~~~~~~~~d~V~imTiH~SKGLEfpvV~ 589 (952) ....+ .....|+..+.+.+..+ .....++..|+.|+..... .......++.++|+|||||+|||||||+|| T Consensus 675 ~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~imTiHkSKGLEfpvV~ 753 (1180) T 1w36_B 675 LATAGGERRLTDILHISELLQEA-GTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVW 753 (1180) T ss_dssp HHSSSHHHHHHHHHHHHHHHHHH-HTTCSCHHHHHHHHHHHHHSCCCCSTTBCCCCTTGGGSEEEEETTTTSSCCEEEEE T ss_pred HHCCCHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEE T ss_conf 86057689999999999999999-87423278999999999860121124554212203670689741541676678899 Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC Q ss_conf 81588776776544422234455566663123544457874779999999764444678878751146652899983167 Q 537021.9.peg.4 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 (952) Q Consensus 590 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~RLlYVAlTRAk~~L~l~~~~~ 669 (952) ||+++++.++....... . ....... ............+.+..+|++|||||||||||++|+|++... T Consensus 754 v~~~~~~~~~~~~~~~~----~-~~~~~~~--------~~~~~~~~~~~~~~e~l~Ee~RLlYVAlTRAk~~L~l~~~~~ 820 (1180) T 1w36_B 754 LPFITNFRVQEQAFYHD----R-HSFEAVL--------DLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLGVAPL 820 (1180) T ss_dssp ETTTTCCCCCCSCEEEC----T-TTCCEEE--------ESSCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCC T ss_pred EECCCCCCCCCCCCCCC----C-CCCCCCC--------CCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEEEEC T ss_conf 93675677766666653----1-0100014--------655465677687899888887876304522335689998401 Q ss_pred CCCCCCCCC--CCCHHHHHHCCCCCCCCCCCCC---CCCCCCCCCC--------CCCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 777666543--2106887310356433222234---5444433222--------11012235544321000122221000 Q 537021.9.peg.4 670 TSNEKKSNQ--RTWYDMVYDSFHNDERVKKIKL---TNSINKDEWI--------AYEWSTHHPENTPLEREETIKQLMDE 736 (952) Q Consensus 670 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (952) ......... ......+............... .......... ................. ........ T Consensus 821 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 899 (1180) T 1w36_B 821 VRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAK-TLQRLPGD 899 (1180) T ss_dssp CCSCSCCSSCCGGGGSHHHHHHTCSSCCCHHHHHHHHHHSCSTTEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC-CCCCCCCC T ss_conf 33457766652556766788862677554146899888753776432245543233334565541121221-24556554 Q ss_pred HHHHHHHCCCCCCC------CCCCCCCCHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 01124530334433------233423361110010015554446630155677999999985668996568999999985 Q 537021.9.peg.4 737 QKIPKKLFSPIKND------INEPYILNPSTIDTKGKTNLESLLSDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCT 810 (952) Q Consensus 737 ~~~~~~~~~~~~~~------~~~~~~l~~s~~~~~~~~~~~~~~~~~~a~~~Gt~vH~~lE~l~~~~~~~~~~~~~~~l~ 810 (952) ......+....... ..................+.......+.|+.+||++|++||++++....+. ..+.+.+. T Consensus 900 ~~~~~s~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ga~~Gt~~H~ilE~ldf~~~~~~-~~i~~~l~ 978 (1180) T 1w36_B 900 NWRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDP-NWVREKLE 978 (1180) T ss_dssp CEEEESSCSSSCSSCTTHHHHCTTSCTTCCCCCCSCCCSSCCGGGSCCSHHHHHHHHHHTTSCCSSSCCCH-HHHHHHHH T ss_pred CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCH-HHHHHHHH T ss_conf 32203726664401345554454545553344210027767800147637689999999984899999999-99999998 Q ss_pred HHCCCCCHHHHHHHHHHHHHHHCCHH------HHHHHCCCCCCCEEEEEEEEC--------------------------C Q ss_conf 00458998899999999999862965------578717778561137888623--------------------------8 Q 537021.9.peg.4 811 KNAKLWPAKEYKNLLLSITRLLENPM------MTTAMSCDSYSEVSVSGKINC--------------------------P 858 (952) Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~Ev~~e~~~~~--------------------------~ 858 (952) .. .........+.+.+..++..+. +..+.......|++|..++.. . T Consensus 979 ~~--~~~~~~~~~~~~~l~~~l~~pL~~~~~~l~~~~~~~~~~E~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1056 (1180) T 1w36_B 979 LG--GFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFM 1056 (1180) T ss_dssp HT--TCCGGGHHHHHHHHHHHHSSCSSSSSCCGGGCCGGGEEEEEEEEEEECSCCCHHHHHHHHHHHCSSTTSCCCCCSC T ss_pred HC--CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 54--9970225999999999980858776766544772021650153222562202888999997336300125432343 Q ss_pred CCCEEEEEEEEEEEEECCEEEEEECCCCCCCCCC----HHH-----HHHHHHHHHHHHHHHHHHHC----CCCCE----- Q ss_conf 8858999797789997998999972580138999----899-----99988999999999999967----99827----- Q 537021.9.peg.4 859 KKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE----IEH-----IPYTHIAQLSIYEKILKDSY----PNKSL----- 920 (952) Q Consensus 859 ~~~~~i~G~IDri~~~~~~~~IiDyKT~~~~~~~----~~~-----~~~~Y~~QL~~Y~~al~~~~----p~~~V----- 920 (952) ...++|+|+||++|.++|+++|||||||+..++. .+. ..++|..||.+|+.||+++. |+... T Consensus 1057 ~~~g~l~G~IDlvf~~dg~~~IvDYKTd~lg~~~~~y~~~~l~~~m~~~~Y~lQ~~lY~~AL~r~L~~r~~~y~~~~h~G 1136 (1180) T 1w36_B 1057 QVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFG 1136 (1180) T ss_dssp CCEEEEEEEEEEEEBSSSCBCCEEEECCCCCSSGGGSBHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHSSSCCHHHHCC T ss_pred CCEEEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCC T ss_conf 54146999999999999999999727899899841029999999988786199999999999999707077987455178 Q ss_pred EEEEEECCC--------CEEEECCHHHHHHHHHHHH Q ss_conf 899998559--------8789879899999999765 Q 537021.9.peg.4 921 VCLLIYVSE--------PKVFIIPQNKLNKAFAEIS 948 (952) Q Consensus 921 ~~~l~y~~~--------~~~~~~~~~~l~~~~~~~~ 948 (952) .++.+|+++ |-..+.|+.+|=.+|+++- T Consensus 1137 g~~YlFlRG~~~~~~~~G~~~~~p~~~~i~~ld~l~ 1172 (1180) T 1w36_B 1137 GVIYLFLRGVDKEHPQQGIYTTRPNAGLIALMDEMF 1172 (1180) T ss_dssp CCEEEESSSCCTTCTTBSCCBCCCCSSHHHHHHHHH T ss_pred CEEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHH T ss_conf 279999479899999996685059999999999985 No 2 >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* Probab=100.00 E-value=0 Score=504.36 Aligned_cols=440 Identities=24% Similarity=0.325 Sum_probs=319.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCC Q ss_conf 99999999999999998699775899999999831584248999998617989998071019999999999984100246 Q 537021.9.peg.4 127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG 206 (952) Q Consensus 127 ~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~~ 206 (952) ......++..|+..+.+.+.+||+|++..+..++.+.+. ++..++.+|+|||||||||||++|++|++.|++ T Consensus 170 ~~~~~~~y~~y~~~l~~~~~~d~~d~~~~~~~ll~~~~~---~~~~~~~~~~~ilvDE~QDt~~~q~~il~~L~~----- 241 (724) T 1pjr_A 170 EKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPD---VLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAE----- 241 (724) T ss_dssp HHHHHHHHHHHHHHHHHTTEECTTHHHHHHHHHHHHCHH---HHHHHHHHCSEEEESSGGGCCHHHHHHHHHHHT----- T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHH---HHHHHHHHCCEECCCCCCCCHHHHHHHHHHHHC----- T ss_conf 999999999999999984999868999999998616999---999987632342132332005889999998733----- Q ss_pred CCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCC Q ss_conf 76667686499996665676542488847899999996652134576531200686668878999999999711210012 Q 537021.9.peg.4 207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG 286 (952) Q Consensus 207 ~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~~~~~ 286 (952) ...++|+|||||||||+||||++.+|.+|.+.|+. .+.+.|++||||++.|++++|.+|.++..+.. T Consensus 242 -----~~~~l~~vGD~dQsIY~frGA~~~~~~~f~~~~~~--------~~~~~L~~NyRs~~~I~~~an~li~~~~~~~~ 308 (724) T 1pjr_A 242 -----RFQNICAVGDADQSIYRWRGADIQNILSFERDYPN--------AKVILLEQNYRSTKRILQAANEVIEHNVNRKP 308 (724) T ss_dssp -----TTCCEEEEECGGGCCCGGGTCCTHHHHTHHHHSTT--------CEEEEECBCSSSCHHHHHHHHHHHTTCSSCCC T ss_pred -----CCCCEEEECCCHHCCCCCCCCCHHHHHHHHHHCCC--------CEEEECCCCCCCCHHHHHHHHHHHHHCCCCCC T ss_conf -----45645885373110245689888999999985566--------76997634557650589999999975224575 Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 33221222122334478887436511344432233431011111000111333368889999999999998358622125 Q 537021.9.peg.4 287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG 366 (952) Q Consensus 287 ~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~I~~l~~~~~~~~~~ 366 (952) ..... ....+..+.+. ........+..++..|..++..+. T Consensus 309 k~~~~---------~~~~g~~i~~~--------------------------~~~~~~~e~~~~~~~i~~~~~~~~----- 348 (724) T 1pjr_A 309 KRIWT---------ENPEGKPILYY--------------------------EAMNEADEAQFVAGRIREAVERGE----- 348 (724) T ss_dssp CCCBC---------SSCCCCCEEEE--------------------------EEEEHHHHHHHHHHHHHHHHTTTS----- T ss_pred CCCCC---------CCCCCCCEEEE--------------------------ECCCHHHHHHHHHHHHHHHHHHCC----- T ss_conf 42234---------47889832788--------------------------449889999987768999998079----- Q ss_pred CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCC Q ss_conf 43687824468986153101224899999874169736604862112331052268768887481311024543058774 Q 537021.9.peg.4 367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF 446 (952) Q Consensus 367 ~~r~~~~~diaVL~r~~~~~~~~~~~l~al~~~~~ip~~~~~~~~~~~~~~v~~l~a~l~~l~~p~~~~~~~~~L~spl~ 446 (952) .+++|||||+|++.+...++..| ...|||+...++.++++++++++++++|+++.+|.++.++.+++.+|.. T Consensus 349 ----~~~~diAIL~R~n~~~~~le~~L----~~~~Ip~~~~~~~~~~~~~eikdlla~lr~l~~~~d~~s~~ril~~p~~ 420 (724) T 1pjr_A 349 ----RRYRDFAVLYRTNAQSRVMEEML----LKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKR 420 (724) T ss_dssp ----CCGGGEEEEESSGGGHHHHHHHH----HHTTCCEEEETSCCGGGSHHHHHHHHHHHHHHCTTCHHHHHHHTTSSCC T ss_pred ----CCCCCEEEEEECHHHHHHHHHHH----HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC T ss_conf ----98200168760567799999999----9879999996897611479999999999998098866999999846433 Q ss_pred CCCHHHHHHHHHHCCC-CCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHC Q ss_conf 7888899998730126-865788-----8764311115899999999999998642199899999998503469999811 Q 537021.9.peg.4 447 NFSEDDIFKICTQRHE-TETVYE-----YIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISR 520 (952) Q Consensus 447 g~~~~~l~~l~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 520 (952) |+....+..+...... ....++ .................................+++..++...+....+... T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~ 500 (724) T 1pjr_A 421 GIGASTIDKLVRYAADHELSLFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAE 500 (724) T ss_dssp TTTSCCCC------------CTTTTTSHHHHCCTTTTTTTTHHHHHHHHHHHHHTTTSCHHHHHHHHHHHTSHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHC T ss_conf 56724678999999860211799987644310003445567788898888777652034999999999854708887520 Q ss_pred CCHH---HHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHCCCCCCC---CCCCCCCCCEEECHHHCCCCCCCEEEECCC Q ss_conf 3523---8999999999999985-20568989999988501001321---123578853030012214567777998158 Q 537021.9.peg.4 521 FGNE---VIDVLDEFLNFTLRNE-QNSYSSLQELISELEQYPPTIKR---AHSANHNEVRIMTVHTAKGLESPVVFLVDT 593 (952) Q Consensus 521 ~~~~---~~~~l~~l~~~a~~~e-~~~~~~l~~f~~~l~~~~~~~~~---~~~~~~d~V~imTiH~SKGLEfpvV~i~~l 593 (952) .... ...+..++......+. ......+..|+..+......... ......++|+|||||+|||||||+|||+|+ T Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~~~~~~~~~~~~~~V~l~TiH~sKGlEfd~V~l~g~ 580 (724) T 1pjr_A 501 RTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISDLDELDGTEQAAEGDAVMLMTLHAAKGLEFPVVFLIGM 580 (724) T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHTTTCC-------------CCCEEEEEGGGGTTCCEEEEEECCC T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHCCCCCCCEEEECCC T ss_conf 37668999998999999999987513400399999999863203334301345557807998330046766788998177 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC Q ss_conf 8776776544422234455566663123544457874779999999764444678878751146652899983167 Q 537021.9.peg.4 594 GSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 (952) Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~RLlYVAlTRAk~~L~l~~~~~ 669 (952) .++.+|+.... .....++||||||||||||||++|||+++.. T Consensus 581 ~eg~fP~~~~~----------------------------------~~~~~leEERRLfYVA~TRAk~~L~lt~~~~ 622 (724) T 1pjr_A 581 EEGIFPHNRSL----------------------------------EDDDEMEEERRLAYVGITRAEEELVLTSAQM 622 (724) T ss_dssp BTBTTTBGGGG----------------------------------TCHHHHHHHHHHHHHHHTTEEEEEEEEEEEE T ss_pred CCCCCCCCCCC----------------------------------CCCHHHHHHHHHHHHHHHHHHCEEEEEEECC T ss_conf 56778530014----------------------------------7715479999999988836854789997270 No 3 >2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A* Probab=100.00 E-value=0 Score=478.30 Aligned_cols=440 Identities=21% Similarity=0.276 Sum_probs=312.1 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCC Q ss_conf 99999999999999999986997758999999998315842489999986179899980710199999999999841002 Q 537021.9.peg.4 125 ASLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFF 204 (952) Q Consensus 125 ~l~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~ 204 (952) ........++..|.+.+..+|.+||+|++..+.+++...+. ++..++.+|+||+||||||||++|++|++.+.+ T Consensus 165 ~~~~~~~~~~~~y~~~~~~~~~~~f~~~~~~~~~l~~~~~~---i~~~~~~~~~~i~vDE~QD~~~~q~~~l~~l~~--- 238 (680) T 2is6_A 165 PVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPH---ILQHYRERFTNILVDEFQDTNNIQYAWIRLLAG--- 238 (680) T ss_dssp HHHHHHHHHHHHHHHHHHHHTEEEHHHHHHHHHHHHHHCHH---HHHHHHHHCCEEEESSGGGCCHHHHHHHHHHHT--- T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHH---HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC--- T ss_conf 89999999999999999886997868899999999860999---999999754700206666679999999987635--- Q ss_pred CCCCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCC Q ss_conf 46766676864999966656765424888478999999966521345765312006866688789999999997112100 Q 537021.9.peg.4 205 VGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENA 284 (952) Q Consensus 205 ~~~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~~~ 284 (952) .+.++++|||||||||+||||++..|.++...|+ +.+.+.|++||||+++|++++|.+|.+...+ T Consensus 239 -------~~~~~~~vGD~~QsIy~frga~~~~~~~~~~~~~--------~~~~~~L~~NyRs~~~I~~~an~l~~~~~~~ 303 (680) T 2is6_A 239 -------DTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFP--------GAETIRLEQNYRSTSNILSAANALIENNNGR 303 (680) T ss_dssp -------TTCEEEEEECGGGCCCGGGTCCTHHHHHHHHHST--------TCEEEECCBCCSSCHHHHHHHHHHHHTSSSC T ss_pred -------CCCCEEEECCHHHHHHHHCCHHHHHHHHHHHHCC--------CCEEEECCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf -------7874278548576444650035789999998778--------9869978987798789999999999727333 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 12332212221223344788874365113444322334310111110001113333688899999999999983586221 Q 537021.9.peg.4 285 QGLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFS 364 (952) Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~I~~l~~~~~~~~ 364 (952) ..... .+ ....++.+.+.. .......+..|+..|..+..++ T Consensus 304 ~~~~l--------~~-~~~~~~~i~~~~--------------------------~~~~~~e~~~i~~~i~~~~~~g---- 344 (680) T 2is6_A 304 LGKKL--------WT-DGADGEPISLYC--------------------------AFNELDEARFVVNRIKTWQDNG---- 344 (680) T ss_dssp CCCCC--------BC-CSCCCSCEEEEE--------------------------EEEHHHHHHHHHHHHHHHHHTT---- T ss_pred CCCCC--------CC-CCCCCCCEEEEE--------------------------CCCHHHHHHHHHHHHHHHHHCC---- T ss_conf 56533--------45-567899627994--------------------------5986899999999999998759---- Q ss_pred CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCC Q ss_conf 25436878244689861531012248999998741697366048621123310522687688874813110245430587 Q 537021.9.peg.4 365 NGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSP 444 (952) Q Consensus 365 ~~~~r~~~~~diaVL~r~~~~~~~~~~~l~al~~~~~ip~~~~~~~~~~~~~~v~~l~a~l~~l~~p~~~~~~~~~L~sp 444 (952) ..++||+||+|++.....+...| ...|||+...++.++++++++++++++|+++.+|.++.++..++.+| T Consensus 345 ------~~~~diaiL~r~~~~~~~l~~~L----~~~~Ip~~~~~~~~~~~~~ev~~~l~~l~~l~~~~d~~~~~~~l~~~ 414 (680) T 2is6_A 345 ------GALAECAILYRSNAQSRVLEEAL----LQASMPYRIYGGMRFFERQEIKDALSYLRLIVNRNDDAAFERVVNTP 414 (680) T ss_dssp ------CCGGGEEEEESSGGGHHHHHHHH----HHTTCCEEECSSSCGGGSHHHHHHHHHHHHHHCTTCHHHHHHHTTSS T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHH----HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCC T ss_conf ------97567344874067799999999----97699889958976103499999999999980988669999998353 Q ss_pred CCCCCHHHHHHHHHHCCCCC-CHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHH Q ss_conf 74788889999873012686-57888764------311115899999999999998642199899999998503469999 Q 537021.9.peg.4 445 LFNFSEDDIFKICTQRHETE-TVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQF 517 (952) Q Consensus 445 l~g~~~~~l~~l~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 517 (952) ++|++...+..+........ .+...... ...........+...+..................+.........+ T Consensus 415 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (680) T 2is6_A 415 TRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQTDRVIKDSGLRTMY 494 (680) T ss_dssp CCSCCHHHHHHHHHHHHHHTCCHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHTSHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 34889999999999887410257888887643100134568999999998777888741020578999998766679998 Q ss_pred HHCCCHHHH---HHHHHHHHHHHHHHHCC----CCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECHHHCCCCCCCEEEE Q ss_conf 811352389---99999999999985205----68989999988501001321123578853030012214567777998 Q 537021.9.peg.4 518 ISRFGNEVI---DVLDEFLNFTLRNEQNS----YSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFL 590 (952) Q Consensus 518 ~~~~~~~~~---~~l~~l~~~a~~~e~~~----~~~l~~f~~~l~~~~~~~~~~~~~~~d~V~imTiH~SKGLEfpvV~i 590 (952) ......... ..+..++..+..+.... ...+..++......... .......++|+|||||+|||||||+||| T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~~~d~V~l~TiH~sKGLEfd~Vil 572 (680) T 2is6_A 495 EQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAALEAGE--GQADTWQDAVQLMTLHSAKGLEFPQVFI 572 (680) T ss_dssp HTTCSHHHHHHHHHHHHHHHHHHHCCCCCCC--CCHHHHHHHHHHHTGGG--CSCCCSSCCEEEEEHHHHTTCCEEEEEE T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC--CCCCCCCCEEEEEEHHCCCCCCCCEEEE T ss_conf 73247566788899999999999876315421013799999998752023--4346779959995142001125888999 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCC Q ss_conf 15887767765444222344555666631235444578747799999997644446788787511466528999831677 Q 537021.9.peg.4 591 VDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNT 670 (952) Q Consensus 591 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~RLlYVAlTRAk~~L~l~~~~~~ 670 (952) +|+.++.+|+.... ......+||||||||||||||++|+|+++... T Consensus 573 ~~~~~g~fP~~~~~----------------------------------~~~~~~eEErRL~YVA~TRAk~~L~l~~~~~~ 618 (680) T 2is6_A 573 VGMEEGMFPSQMSL----------------------------------DEGGRLEEERRLAYVGVTRAMQKLTLTYAETR 618 (680) T ss_dssp CCCBTBTTTBHHHH----------------------------------SSSSTHHHHHHHHHHHHTTEEEEEEEEEEEEE T ss_pred ECCCCCCCCCCCCC----------------------------------CCCHHHHHHHHHHHHHHHHHHCEEEEEEECCC T ss_conf 67818998752458----------------------------------87421699998999898368457899986602 No 4 >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 Probab=100.00 E-value=0 Score=457.04 Aligned_cols=440 Identities=20% Similarity=0.296 Sum_probs=302.9 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCCC Q ss_conf 99999999999999999869977589999999983158424899999861798999807101999999999998410024 Q 537021.9.peg.4 126 SLTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFV 205 (952) Q Consensus 126 l~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~ 205 (952) .......+...|...+...+.+||+|++..+..++...+. ++..++.+|+||+||||||||++|++|+..++. T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~vDE~QD~~~~q~~l~~~l~~---- 232 (673) T 1uaa_A 160 RDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQANEE---VRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVG---- 232 (673) T ss_dssp HHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHH---HHHHHHTTCSEEEESCGGGCBHHHHHHHHHHHT---- T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHH---HHHHHHHHCEEEECCCHHHCCHHHHHHHHCCCC---- T ss_conf 8999999999999999981777815789999998620858---999998642477425134349888865430147---- Q ss_pred CCCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCC Q ss_conf 67666768649999666567654248884789999999665213457653120068666887899999999971121001 Q 537021.9.peg.4 206 GKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQ 285 (952) Q Consensus 206 ~~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~~~~ 285 (952) .+.++++|||||||||+||||++..|..+...|+. .+.+.|++||||++.|++++|.+|..+.... T Consensus 233 ------~~~~l~~vGD~~QsIy~frga~~~~~~~~~~~~~~--------~~~~~L~~nyRs~~~I~~~~~~li~~~~~~~ 298 (673) T 1uaa_A 233 ------SRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPA--------LKVIKLEQNYRSSGRILKAANILIANNPHVF 298 (673) T ss_dssp ------TTCCEEEECCGGGCCCGGGTBCTTHHHHHHHHSTT--------CEEECCCCBSSSCHHHHHHHHHHHHTSCCSS T ss_pred ------CCCEEEEECCHHHHHHHHCCCCHHHHHHHHHCCCC--------CEEEECCCCCCCCHHHHHHHHHHHHHCCCCC T ss_conf ------88536762350355455337741221002201798--------7698687655888788899999986074111 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 23322122212233447888743651134443223343101111100011133336888999999999999835862212 Q 537021.9.peg.4 286 GLSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSN 365 (952) Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~I~~l~~~~~~~~~ 365 (952) ...... .....+.+.... .......+..+...|....... T Consensus 299 ~~~~~~---------~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~i~~~~~~~----- 338 (673) T 1uaa_A 299 EKRLFS---------ELGYGAELKVLS--------------------------ANNEEHEAERVTGELIAHHFVN----- 338 (673) T ss_dssp CCCCCB---------SSCCCCCBEEEE--------------------------CSSHHHHHHHHHHHHHHHHHHH----- T ss_pred CCCCCC---------CCCCCCCCCCHH--------------------------CCCHHHHHHHHHHHHHHHHHCC----- T ss_conf 000132---------124686522000--------------------------0104899988888876542025----- Q ss_pred CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCC Q ss_conf 54368782446898615310122489999987416973660486211233105226876888748131102454305877 Q 537021.9.peg.4 366 GKKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPL 445 (952) Q Consensus 366 ~~~r~~~~~diaVL~r~~~~~~~~~~~l~al~~~~~ip~~~~~~~~~~~~~~v~~l~a~l~~l~~p~~~~~~~~~L~spl 445 (952) ...++||+||+|++.+...+...|. ..|||+...++..+++++++++++++|+++.+|.++.++..++.+|. T Consensus 339 ----~~~~~~iavL~r~~~~~~~~~~~L~----~~~Ip~~~~~~~~~~~~~ei~~ll~~l~~~~~~~~~~~~~rll~~~~ 410 (673) T 1uaa_A 339 ----KTQYKDYAILYRGNHQSRVFEKFLM----QNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPK 410 (673) T ss_dssp ----CCCTTTEEEEESSSGGGTTHHHHHH----HTTCCEEESCCCCGGGCHHHHHHHHHHHHHHCTTCHHHHHHHSSTTC T ss_pred ----CCCCCCEEEEECCHHHHHHHHHHHH----HCCCCEEEECCCCHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC T ss_conf ----6773214541002144899999999----77998899578650023999999999999809885699999982720 Q ss_pred CCCCHHHHHHHHHHCCCC-CCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHH Q ss_conf 478888999987301268-657888764------3111158999999999999986421998999999985034699998 Q 537021.9.peg.4 446 FNFSEDDIFKICTQRHET-ETVYEYIQK------FANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFI 518 (952) Q Consensus 446 ~g~~~~~l~~l~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 518 (952) .++.......+....... ...+..... ...............+......... .+...+.............. T Consensus 411 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 489 (673) T 1uaa_A 411 REIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAER-EPIAAVRDLIHGMDYESWLY 489 (673) T ss_dssp CCCCHHHHHHHHHHHHHTTSCHHHHTTCTTHHHHSCSHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTHHHHHH T ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHH T ss_conf 01355689999999987077577898876553100045677888899999999997523-84789999999863566666 Q ss_pred HC-C----CHHHHHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECHHHCCCCCCCEEE Q ss_conf 11-3----523899999999999998520----56898999998850100132112357885303001221456777799 Q 537021.9.peg.4 519 SR-F----GNEVIDVLDEFLNFTLRNEQN----SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVF 589 (952) Q Consensus 519 ~~-~----~~~~~~~l~~l~~~a~~~e~~----~~~~l~~f~~~l~~~~~~~~~~~~~~~d~V~imTiH~SKGLEfpvV~ 589 (952) .. . ......++.++++.+..+... ...++..++.++...............|+|+|||||+|||||||+|| T Consensus 490 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~l~TiH~sKGLEfd~Vi 569 (673) T 1uaa_A 490 ETSPSPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFPYVY 569 (673) T ss_dssp HHSSSHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHTTCCCCC---CCCCCSEEEEESTTTSSCCEEEEE T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHCCCCEEE T ss_conf 64114306999999999999999999841554532459999999986545542655566996899767653321589899 Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC Q ss_conf 81588776776544422234455566663123544457874779999999764444678878751146652899983167 Q 537021.9.peg.4 590 LVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN 669 (952) Q Consensus 590 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~RLlYVAlTRAk~~L~l~~~~~ 669 (952) |+|+.++.||+... ......+||+|||||||||||++|||++... T Consensus 570 v~g~~~g~~P~~~~-----------------------------------~d~~~~eEErRL~YVA~TRAk~~L~l~~~~~ 614 (673) T 1uaa_A 570 MVGMEEGFLPHQSS-----------------------------------IDEDNIDEERRLAYVGITRAQKELTFTLCKE 614 (673) T ss_dssp ECCCBSSTTTTHHH-----------------------------------HTTTCCHHHHHHHHHHHHTEEEEEEEEECSS T ss_pred EECCCCCCCCCCCC-----------------------------------CCCCCHHHHHHHHHHHHHHHHCEEEEEEECC T ss_conf 96680799977545-----------------------------------8953288999999989987850789999551 Q ss_pred C Q ss_conf 7 Q 537021.9.peg.4 670 T 670 (952) Q Consensus 670 ~ 670 (952) . T Consensus 615 ~ 615 (673) T 1uaa_A 615 R 615 (673) T ss_dssp C T ss_pred C T ss_conf 5 No 5 >1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C* Probab=99.97 E-value=2.1e-26 Score=206.27 Aligned_cols=543 Identities=11% Similarity=0.090 Sum_probs=276.1 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH----CCCCEEECCCCCCCCC Q ss_conf 368889999999999998358622125436878244689861531012248999998741----6973660486211233 Q 537021.9.peg.4 340 SSASILARRIAYTISNMIGTDTIFSNGKKRVIQAKDILVLVRKRKDTPLITFLTRFLKND----YKISVVGNDRFILTDH 415 (952) Q Consensus 340 ~~~~~~a~~i~~~I~~l~~~~~~~~~~~~r~~~~~diaVL~r~~~~~~~~~~~l~al~~~----~~ip~~~~~~~~~~~~ 415 (952) ......++.|+.+|.+++..+. .++|+||+|+++.... |...+.+.+.. .+||+...++..+..+ T Consensus 380 ~s~~rEvE~l~~~Il~ll~~~~--------~l~p~DIaVl~pdi~~---Y~p~I~avF~~~~~~~~IP~~i~~~~~~~~~ 448 (1122) T 1w36_C 380 HSPQREVEVLHDRLLAMLEEDP--------TLTPRDIIVMVADIDS---YSPFIQAVFGSAPADRYLPYAISDRRARQSH 448 (1122) T ss_dssp SSHHHHHHHHHHHHHHHHHHST--------TCCGGGEEEEESCHHH---HHHHHHHHTSCCSSTTCCCCEECSEETGGGC T ss_pred CCHHHHHHHHHHHHHHHHHCCC--------CCCCCCEEEECCCHHH---HHHHHHHHHHCCCCCCCCCEEECCCHHHHCC T ss_conf 9989999999999999974288--------8882126787288798---8999999861024567887241352043205 Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHCCCCC----CCCCHHHHHHHHHHCCC---------------------CCCHHHHH Q ss_conf 105226876888748131102454305877----47888899998730126---------------------86578887 Q 537021.9.peg.4 416 LAIKDLMALGRFILSQEDDLSFVCMLKSPL----FNFSEDDIFKICTQRHE---------------------TETVYEYI 470 (952) Q Consensus 416 ~~v~~l~a~l~~l~~p~~~~~~~~~L~spl----~g~~~~~l~~l~~~~~~---------------------~~~~~~~~ 470 (952) +.+..+++++....+......+..+|.+|. ++++..++..+..-... ..++.... T Consensus 449 pl~~~l~~lL~l~~~r~~~~~vl~lL~~p~l~~~f~l~~~~~~~l~~~~~~~gir~g~~~~~~~~~~~~~~~~~tw~~~l 528 (1122) T 1w36_C 449 PVLEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQHTWRFGL 528 (1122) T ss_dssp HHHHHHHHHTTGGGCCCCHHHHHHHTTSHHHHHHTTCCHHHHHHHHHHHHHHTCCSCSCHHHHHHTTCCCCSSSSHHHHH T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCHHHHH T ss_conf 89999999998741799999999997681423213898789999999999808765743566787604521113487767 Q ss_pred HHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHCCHHHHHHHCCCHH Q ss_conf 643-------------------------1111589999999999999864219-98999999985034699998113523 Q 537021.9.peg.4 471 QKF-------------------------ANCGISKFQHVIKYIHELIHIAQFC-SPHDFFTLILGAKKGRQQFISRFGNE 524 (952) Q Consensus 471 ~~~-------------------------~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~ 524 (952) ... .......+..+...+..+....... +..+....+.. ....+......+ T Consensus 529 ~Rlllg~~~~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~l~~L~~~~~~l~~~~t~~~w~~~l~~---lL~~~~~~~~~~ 605 (1122) T 1w36_C 529 TRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRD---MLNAFFLPDAET 605 (1122) T ss_dssp HHHHHHHSSCSTTCCSSSCCCCTTSCSSTHHHHHHHHHHHHHHHHHHHHTSSCEEHHHHTTHHHH---HHHHHCCCCSHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH---HHHHHHCCCHHH T ss_conf 77765432013455641234500122226999999999999999999997188989999999999---999974888668 Q ss_pred ------HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECHHHCCCCCCCEEEECCCCCCCC Q ss_conf ------89999999999999852056898999998850100132112357885303001221456777799815887767 Q 537021.9.peg.4 525 ------VIDVLDEFLNFTLRNEQNSYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVF 598 (952) Q Consensus 525 ------~~~~l~~l~~~a~~~e~~~~~~l~~f~~~l~~~~~~~~~~~~~~~d~V~imTiH~SKGLEfpvV~i~~l~~~~~ 598 (952) ..+.+.++++...........++..|...+...-...........|+|+|+|+|.+||++|++|||.|++++.+ T Consensus 606 ~~~~~~~~~~l~~l~~~~~~~~~~~~l~l~~~~~~L~~~l~~~~~~~~~~~~~V~v~tl~~~R~ipfkvVfllGlndg~f 685 (1122) T 1w36_C 606 EAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVY 685 (1122) T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCSEECHHHHHHHHHHHHHHCEECTTTTSSSCEEECCCTTCCCCEEEEEEECCBTTTS T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHCCCCCCEEEEEECCCCCC T ss_conf 99999999999999999987236764389999999998740134567898997698112553578867699973366757 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC-CCCCCC Q ss_conf 7654442223445556666312354445787477999999976444467887875114665289998316777-766654 Q 537021.9.peg.4 599 SHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSNTS-NEKKSN 677 (952) Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~RLlYVAlTRAk~~L~l~~~~~~~-~~~~~~ 677 (952) |.......+....... ... .....+|++++||+|+|+|+++||||++.... +..... T Consensus 686 P~~~~~~~fdl~~~~~---------~~g-------------d~~~~~edr~lfl~al~sA~~~L~lSy~~~~~~~~~~~~ 743 (1122) T 1w36_C 686 PRQLAPLGFDLMSQKP---------KRG-------------DRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERF 743 (1122) T ss_dssp SCCCCCCSSCHHHHSC---------CTT-------------CCCHHHHHHHHHHHHHHHEEEEEEEEEECBCSSSCCBCC T ss_pred CCCCCCCCCCCHHHCC---------CCC-------------CCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCC T ss_conf 6656666653154423---------668-------------810657899999999997544231444123278998348 Q ss_pred CCCCHHHHHHCCCCCCCCCCCCCCCC------CCCCCCCCCCCC---CCC--CCCCCCCCHHHHHHHHHHHHHHHHHCCC Q ss_conf 32106887310356433222234544------443322211012---235--5443210001222210000112453033 Q 537021.9.peg.4 678 QRTWYDMVYDSFHNDERVKKIKLTNS------INKDEWIAYEWS---THH--PENTPLEREETIKQLMDEQKIPKKLFSP 746 (952) Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (952) ++.+...+.................. ............ ... .......................... T Consensus 744 PS~~l~eL~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~h~l~~fs~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 821 (1122) T 1w36_C 744 PSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQSYAREWLPAASQAGKAHSEFV-- 821 (1122) T ss_dssp BCHHHHHHHHHHHTTEECSSCSSSCHHHHHHHHHHHHCCBCCSSTTSGGGSSSSTTCCSCGGGHHHHTTCCCCCCCSC-- T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCC-- T ss_conf 778999999999742357774334632004678865401266788885553004323440999876325455676445-- Q ss_pred CCCCCCCCCCCCHHHCCHHCCCCCCCCC--------------------CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 4433233423361110010015554446--------------------63015567799999998566899656899999 Q 537021.9.peg.4 747 IKNDINEPYILNPSTIDTKGKTNLESLL--------------------SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFIT 806 (952) Q Consensus 747 ~~~~~~~~~~l~~s~~~~~~~~~~~~~~--------------------~~~~a~~~Gt~vH~~lE~l~~~~~~~~~~~~~ 806 (952) .......+..++.|.+.....||..... -..++...+.+.|.+++.+-.... ...+.. T Consensus 822 ~~l~~~~~~~ls~s~L~~f~~~P~~~fl~~~L~~~~~~~~~~~~d~Ep~~ld~L~~~~l~~~ll~~~l~~~~--~~~~~~ 899 (1122) T 1w36_C 822 QPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDD--AERLFR 899 (1122) T ss_dssp CCCCCCCCSCEEHHHHHHHSSSHHHHHHHTTTCCCCCCSCCCCCSSCCSSCCHHHHHHHHHHHHHHHHTTCC--HHHHHH T ss_pred CCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--HHHHHH T ss_conf 689987788448999999997968999997448888621224555686667706552499999999871899--999999 Q ss_pred HHHHHHCCCCCHH-----HHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEEECCEEEEE Q ss_conf 9985004589988-----99999999999862965578717778561137888623888589997977899979989999 Q 537021.9.peg.4 807 SYCTKNAKLWPAK-----EYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIF 881 (952) Q Consensus 807 ~~l~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~Ev~~e~~~~~~~~~~~i~G~IDri~~~~~~~~Ii 881 (952) +... .+ .++.. ..+.....+..+++. +... .....++++ ....++..|+|+||.|. +++ +| T Consensus 900 ~~~~-~g-~LP~g~~g~~~~~~~~~~~~~l~~~--~~~~--~~~~~~~~~----~l~~~~~~L~G~l~~v~--~~~--~v 965 (1122) T 1w36_C 900 RFRA-AG-DLPYGAFGEIFWETQCQEMQQLADR--VIAC--RQPGQSMEI----DLACNGVQITGWLPQVQ--PDG--LL 965 (1122) T ss_dssp HHHH-HT-CSCSHHHHHHHHHHHHHHHHHHHHH--HHTT--CCCCEEEEE----EEEETTEEEEEEEEEEC--SSE--EE T ss_pred HHHH-CC-CCCCCHHHHHHHHHHHHHHHHHHHH--HHHH--CCCCCCEEE----EEEECCEEEEEEECCCC--CCC--EE T ss_conf 9997-59-9998255699999999999999999--9870--688886348----98409889999889862--683--59 Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEE--EECCHHHHHHHHHH Q ss_conf 725801389998999998899999999999996799827899998559878--98798999999997 Q 537021.9.peg.4 882 EYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSEPKV--FIIPQNKLNKAFAE 946 (952) Q Consensus 882 DyKT~~~~~~~~~~~~~~Y~~QL~~Y~~al~~~~p~~~V~~~l~y~~~~~~--~~~~~~~l~~~~~~ 946 (952) .|++++.. .. ...++-+...+++.. +.+....++....+.+ -+++++.-...|.. T Consensus 966 ~~~~~~~~---~~-----~~l~~wl~hL~~~a~--~~~~~~~~~~~~~~~~~~~p~~~~~A~~~L~~ 1022 (1122) T 1w36_C 966 RWRPSLLS---VA-----QGMQLWLEHLVYCAS--GGNGESRLFLRKDGEWRFPPLAAEQALHYLSQ 1022 (1122) T ss_dssp EECSSCCC---HH-----HHHHHHHHHHHHHHT--SCCCEEEEECGGGCEEEECCCCHHHHHHHHHH T ss_pred EEEECCCC---HH-----HHHHHHHHHHHHHHC--CCCCCEEEEEECCCEEEECCCCHHHHHHHHHH T ss_conf 99727898---78-----899999999999826--99997289997696799899897999999999 No 6 >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A Probab=99.66 E-value=2e-14 Score=119.46 Aligned_cols=87 Identities=20% Similarity=0.211 Sum_probs=62.3 Q ss_pred HCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHH-------HHHHHCCCCHHHHHHHHHHHHH Q ss_conf 617989998071019999999999984100246766676864999966656-------7654248884789999999665 Q 537021.9.peg.4 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQ-------SIYSFHGAEPKRVLREKRINQK 246 (952) Q Consensus 174 ~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~~~~~~~~~~~l~~VGD~kQ-------SIY~FRGAd~~~~~~~~~~f~~ 246 (952) ...|++++|||.......+.-+- |.. ..+.+++|||++| ....+.|-+-++|.+.... T Consensus 337 ~~~fd~viIDEA~Q~~e~~~lip--l~~----------~~~~~ilvGD~~QL~p~v~s~~~~~~~l~~Slf~r~~~~--- 401 (624) T 2gk6_A 337 KMQFRSILIDESTQATEPECMVP--VVL----------GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--- 401 (624) T ss_dssp TCCCSEEEETTGGGSCHHHHHHH--HTT----------TBSEEEEEECTTSCCCCCSCHHHHHHTTTSCHHHHHHHT--- T ss_pred HCCCCEEEEEHHHCCCHHHHHHH--HHH----------CCCCEEEECCCCCCCCCEECHHHHHCCCHHHHHHHHHHC--- T ss_conf 06877788504212256999999--985----------044289813224467513115555435200189998751--- Q ss_pred HCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCC Q ss_conf 213457653120068666887899999999971121 Q 537021.9.peg.4 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 (952) Q Consensus 247 ~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~ 282 (952) +...+.|.++||+.+.|.++.|..|.... T Consensus 402 -------~~~~~~L~~qyRm~~~I~~f~s~~fy~~~ 430 (624) T 2gk6_A 402 -------GIRPIRLQVQYRMHPALSAFPSNIFYEGS 430 (624) T ss_dssp -------TCCCEECCEECSSCHHHHHHHHHHHSTTC T ss_pred -------CCCCEECHHCCCCCHHHHHCCHHHHCCCC T ss_conf -------67831211006677789970167653886 No 7 >2wjy_A Regulator of nonsense transcripts 1; alternative splicing, nonsense mediated decay, zinc-finger, ATP-binding, polymorphism, metal-binding, UPF2; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Probab=99.64 E-value=2.2e-13 Score=111.84 Aligned_cols=87 Identities=20% Similarity=0.214 Sum_probs=61.9 Q ss_pred HCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHH-------HHHHCCCCHHHHHHHHHHHHH Q ss_conf 6179899980710199999999999841002467666768649999666567-------654248884789999999665 Q 537021.9.peg.4 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQS-------IYSFHGAEPKRVLREKRINQK 246 (952) Q Consensus 174 ~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~~~~~~~~~~~l~~VGD~kQS-------IY~FRGAd~~~~~~~~~~f~~ 246 (952) ..+|++++|||....+..+.-| .|.. +.+.+++|||++|- -...-|-+.++|.++... T Consensus 513 ~~~Fd~vIIDEAsQ~~epe~li--pL~~----------~~k~lILVGD~~QLpP~v~s~~a~~~gl~~SLFeRl~~~--- 577 (800) T 2wjy_A 513 KMQFRSILIDESTQATEPECMV--PVVL----------GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL--- 577 (800) T ss_dssp TCCCSEEEETTGGGSCHHHHHH--HHTT----------TBSEEEEEECTTSCCCCCCCHHHHHTTTTSCHHHHHHHT--- T ss_pred CCCCCEEEEEHHHCCCCHHHHH--HHHH----------CCCEEEECCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHC--- T ss_conf 5798989975653377389999--9985----------241377766711368842457777547200099999762--- Q ss_pred HCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCC Q ss_conf 213457653120068666887899999999971121 Q 537021.9.peg.4 247 RATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPE 282 (952) Q Consensus 247 ~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~ 282 (952) +...+.|.++||+.|.|.+|.|..|-... T Consensus 578 -------~~~~~~L~~QYRmhp~I~~fps~~FY~g~ 606 (800) T 2wjy_A 578 -------GIRPIRLQVQYRMHPALSAFPSNIFYEGS 606 (800) T ss_dssp -------TCCCEECCEECSSCHHHHHHHHHHHSTTC T ss_pred -------CCCCEEHHHHCCCCHHHHHHHHHHHHCCC T ss_conf -------58822488874867799983077761877 No 8 >3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, structural genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum} Probab=99.53 E-value=9.5e-15 Score=121.77 Aligned_cols=56 Identities=25% Similarity=0.353 Sum_probs=46.9 Q ss_pred CCCCEEECHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 88530300122145677779981588776776544422234455566663123544457874779999999764444678 Q 537021.9.peg.4 569 HNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYN 648 (952) Q Consensus 569 ~d~V~imTiH~SKGLEfpvV~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~ 648 (952) .+.|.+||||++||||||+|||+++.....+. .+++ T Consensus 99 ~~~I~v~Tih~~KGlEfd~Vil~~~~~~~~~~--------------------------------------------~~~~ 134 (174) T 3dmn_A 99 APGVIVVPSFLAKGLEFDAVIVWNANQENYQR--------------------------------------------EDER 134 (174) T ss_dssp CSSEEEEEGGGCTTCCEEEEEEETCBTTTSCS--------------------------------------------GGGH T ss_pred CCCEEEEEEECCCCCCCCEEEEECCCCCCCCC--------------------------------------------HHHH T ss_conf 68479986030367647999995661033468--------------------------------------------5565 Q ss_pred HHHHHHCCCCCCEEEEEECC Q ss_conf 87875114665289998316 Q 537021.9.peg.4 649 RLLYVGMTRASDQLIICKHS 668 (952) Q Consensus 649 RLlYVAlTRAk~~L~l~~~~ 668 (952) ||||||||||+++|+|+... T Consensus 135 ~llYVa~TRAk~~L~i~~~~ 154 (174) T 3dmn_A 135 QLLYTICSRAMHELTLVAVG 154 (174) T ss_dssp HHHHHHHTTEEEEEEEEEES T ss_pred HHHHHHHHHCCCEEEEEECC T ss_conf 46521450100289999899 No 9 >3h4r_A Exodeoxyribonuclease 8; exonuclease, recombination, hydrolase; 2.80A {Escherichia coli k-12} Probab=99.26 E-value=1.4e-11 Score=98.77 Aligned_cols=188 Identities=15% Similarity=0.176 Sum_probs=109.9 Q ss_pred CCCHHHCCHHCCCCCCC--------CCCCCHHHHHHHHHHHHHHHCCC----CC---HHHH-----HHHHHHH----HHH Q ss_conf 33611100100155544--------46630155677999999985668----99---6568-----9999999----850 Q 537021.9.peg.4 756 ILNPSTIDTKGKTNLES--------LLSDNQTFNRGLIIHKLLQVIFT----LP---EHKR-----KNFITSY----CTK 811 (952) Q Consensus 756 ~l~~s~~~~~~~~~~~~--------~~~~~~a~~~Gt~vH~~lE~l~~----~~---~~~~-----~~~~~~~----l~~ 811 (952) .+|+|.+.....||..+ ......++.+||++|.+++.... .. .... ....... ... T Consensus 12 ~lS~S~l~~~~~cP~~~~~~~~~~~~~~~t~a~~~Gt~vH~~lle~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (265) T 3h4r_A 12 GISKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLELEEFSNRFIVAPEFNRRTNAGKEEEKAFLMECAST 91 (265) T ss_dssp CBCHHHHHHHHHCHHHHHHHTTSCCCCCCCSCCTHHHHHHHHHSSHHHHTCC---------------------------- T ss_pred CCCHHHHHHHHHCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 83988899998699999999727899999879986499999885755523432226502331567899999999886632 Q ss_pred HCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEEECCEEEEEECCCCCCCCC Q ss_conf 04589988999999999998629655787177785611378886238885899979778999799899997258013899 Q 537021.9.peg.4 812 NAKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSGKINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQ 891 (952) Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Ev~~e~~~~~~~~~~~i~G~IDri~~~~~~~~IiDyKT~~~~~~ 891 (952) ....+...+.+.+...+..+..++....+.......|+.+ .+.....+..+.|+||++ .+++..||||||+..+.. T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~~~~~~~g~~~kgriD~~--~~d~~~iiD~Kt~~~~~~ 167 (265) T 3h4r_A 92 GKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAESSI--YWEDPETGILCRCRPDKI--IPEFHWIMDVKTTADIQR 167 (265) T ss_dssp ------CCCTTHHHHHHHHHTTSHHHHHHHSSSCBSSCCE--EEECTTTCCEEEECCSEE--EGGGTEEEEEEEESCHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCEEEEEE--EEEECCCCEEEEEEEEEE--ECCCCEEEEEEECCCHHH T ss_conf 7764458999999999999984855676503455379989--899657775888878998--568855676400366777 Q ss_pred C-HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC--------CEEEECCHHHHHHHHHHHH Q ss_conf 9-8999998899999999999996799827899998559--------8789879899999999765 Q 537021.9.peg.4 892 E-IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVSE--------PKVFIIPQNKLNKAFAEIS 948 (952) Q Consensus 892 ~-~~~~~~~Y~~QL~~Y~~al~~~~p~~~V~~~l~y~~~--------~~~~~~~~~~l~~~~~~~~ 948 (952) - .....-+|..|+++|+.++++.+ ++..+-.++.+.. -.+++++++.|+.+...+. T Consensus 168 ~~~~~~~~~Y~~Q~a~Y~~~~~~~~-g~~~~f~fi~vek~~~~~~~~v~v~~~~~~~l~~g~~~~~ 232 (265) T 3h4r_A 168 FKTAYYDYRYHVQDAFYSDGYEAQF-GVQPTFVFLVASTTIECGRYPVEIFMMGEEAKLAGQQEYH 232 (265) T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHH-SSCCEEEEEEEESSCBTTBCCEEEEECCHHHHHHHHHHHH T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHH-CCCCCEEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHH T ss_conf 7776651378999999999999962-9998459999986577886138999589999999999999 No 10 >3l0a_A Putative exonuclease; RER070207002219, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PE4; 2.19A {Eubacterium rectale} Probab=99.25 E-value=3.3e-10 Score=88.83 Aligned_cols=160 Identities=13% Similarity=0.109 Sum_probs=100.8 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEE Q ss_conf 63015567799999998566899656899999998500-45899889999999999986296557871777856113788 Q 537021.9.peg.4 775 SDNQTFNRGLIIHKLLQVIFTLPEHKRKNFITSYCTKN-AKLWPAKEYKNLLLSITRLLENPMMTTAMSCDSYSEVSVSG 853 (952) Q Consensus 775 ~~~~a~~~Gt~vH~~lE~l~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Ev~~e~ 853 (952) ....++.+||++|.++|... .. ......... ....-..+.+.+...+..+++++....+.. ...|+++.. T Consensus 51 ~~t~al~~Gt~vH~~le~~~----~~---~~~~~~~~~~~~~~~~~e~~~~~~m~~~~~~~~~~~~~~~--~~~E~~~~~ 121 (266) T 3l0a_A 51 EKSTALLVGSYVDSYFEGSL----DQ---FKKDNPEIFTQKGELKANFKQAEEIIARIERDEYFMKYMS--GQKQVIMTG 121 (266) T ss_dssp CCCHHHHHHHHHHHHHHTCH----HH---HHHHCGGGBCTTSSBCHHHHHHHHHHHHHHTCHHHHHHTT--SEEEEEEEE T ss_pred CCCHHHHHHHHHHHHHHCHH----HH---HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCC--CCCEEEEEE T ss_conf 99879987189999865745----53---4201842013331448999999999999996700355515--772478999 Q ss_pred EEECCCCCEEEEEEEEEEEEECCEEEEEECCCCCCCCCC---------HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 862388858999797789997998999972580138999---------89999988999999999999967998278999 Q 537021.9.peg.4 854 KINCPKKDIIISGRIDQISISQQNIFIFEYKTHHHVPQE---------IEHIPYTHIAQLSIYEKILKDSYPNKSLVCLL 924 (952) Q Consensus 854 ~~~~~~~~~~i~G~IDri~~~~~~~~IiDyKT~~~~~~~---------~~~~~~~Y~~QL~~Y~~al~~~~p~~~V~~~l 924 (952) . ..|+.+.|+||++.. ++ .|+|+||.+..... ..-....|..||++|+.++++.+ +.++..++ T Consensus 122 ~----~~gv~~kg~iD~i~~-~~--~ivDlKtt~~~~~~~~~~~~~~~~~~~~~~Y~~Q~a~Y~~~l~~~~-g~~~~~~~ 193 (266) T 3l0a_A 122 E----LFGAKWKIKMDSYIP-GV--AIVDLKVMASITDLKWVKDIGYLDFVRYWGYDIQGAVYQEIVRQNT-GEKLPFFI 193 (266) T ss_dssp E----ETTEEEEEEEEEEET-TT--EEEEEEEESCSSCCEEETTTEEECHHHHTTHHHHHHHHHHHHHHHH-SCCCCEEE T ss_pred E----ECCEEEEEEEEEEEC-CC--CEEEEEEEECCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH-CCCCCEEE T ss_conf 7----758587406789956-89--7267677411563224432103557775288999999999999986-89863799 Q ss_pred EECCC-----CEEEECCHHHHHHHHHHHHHCC Q ss_conf 98559-----8789879899999999765158 Q 537021.9.peg.4 925 IYVSE-----PKVFIIPQNKLNKAFAEISTKI 951 (952) Q Consensus 925 ~y~~~-----~~~~~~~~~~l~~~~~~~~~~~ 951 (952) +++.. ..++.++++.++.++..+..++ T Consensus 194 v~v~k~~p~~~~~~~~~~~~l~~~~~~v~~~i 225 (266) T 3l0a_A 194 AGATKQTEPDIRIIHVTDNYLQEALHMVEMNM 225 (266) T ss_dssp EEEECSSSCCEEEEEECHHHHHHHHHHHHHHH T ss_pred EEEECCCCCCCEEEECCHHHHHHHHHHHHHHH T ss_conf 99978888760489779899999999999999 No 11 >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Probab=99.19 E-value=1.1e-11 Score=99.54 Aligned_cols=54 Identities=15% Similarity=0.136 Sum_probs=42.9 Q ss_pred CCCCEEEEECHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHCCCCHHHHH Q ss_conf 1798999807101999999999998410024676667686499996665676542488847899 Q 537021.9.peg.4 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVL 238 (952) Q Consensus 175 ~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~~~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~ 238 (952) ..++.++|||.+..+..+...+.... ..+..+.+|||++|-+..++|+....+. T Consensus 261 ~~~~~~ivDE~sm~~~~~~~~~~~a~----------~~~~~l~l~gD~~Ql~~v~~g~~~~~l~ 314 (608) T 1w36_D 261 LHLDVLVVDEASMIDLPMMSRLIDAL----------PDHARVIFLGDRDQLASVEAGAVLGDIC 314 (608) T ss_dssp CSCSEEEECSGGGCBHHHHHHHHHTC----------CTTCEEEEEECTTSGGGTSTTBCHHHHG T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HCCCEEEEECCHHHHHHHHCCCHHHHHH T ss_conf 12236776788654199887787762----------0564799833301201111351388899 No 12 >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Probab=98.74 E-value=3.4e-09 Score=81.56 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=51.7 Q ss_pred CCCCEEEEECHHCCCHHHHHHH-HHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC Q ss_conf 1798999807101999999999-998410024676667686499996665676542488847899999996652134576 Q 537021.9.peg.4 175 QEINHILIDEVQDTSLIQWEVI-RSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQ 253 (952) Q Consensus 175 ~~~~~ilVDEfQDT~~~Q~~il-~~L~~~~~~~~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~ 253 (952) ..+++|+|||+--.|.-++.-+ +.+ +.+..+++|||++|---=-.|. .|..+.+. T Consensus 278 ~~~dvlIIDEaSMv~~~~~~~Ll~a~-----------~~g~rlIlvGD~~QLppV~~G~---~~~~l~~~---------- 333 (574) T 3e1s_A 278 APYDLLIVDEVSMMGDALMLSLLAAV-----------PPGARVLLVGDTDQLPPVDAGL---PLLALAQA---------- 333 (574) T ss_dssp CSCSEEEECCGGGCCHHHHHHHHTTS-----------CTTCEEEEEECTTSCCCSSSCC---HHHHHHHH---------- T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHC-----------CCCCEEEEECCHHHCCCCCCCC---HHHHHHHC---------- T ss_conf 65868999266622399999998645-----------3688798506867547755684---78988513---------- Q ss_pred CCCEEECCCCCCCCH--HHHHHHHHHHHC Q ss_conf 531200686668878--999999999711 Q 537021.9.peg.4 254 KFSIIELPLSFRSTA--DILTVVDKVFSI 280 (952) Q Consensus 254 ~~~~~~L~~N~RS~~--~Ii~~~N~~f~~ 280 (952) ...+.|+++||... .++..++.+... T Consensus 334 -~~~~~Lt~i~RQ~~~s~i~~~a~~i~~g 361 (574) T 3e1s_A 334 -APTIKLTQVYRQAAKNPIIQAAHGLLHG 361 (574) T ss_dssp -SCEEECCCCCHHHHTCHHHHHHHHHHTT T ss_pred -CCEEEEEEEEECCCCCHHHHHHHHHHCC T ss_conf -8848966776244746899999998749 No 13 >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, structural genomics, PSI-2; 2.35A {Corynebacterium glutamicum atcc 13032} Probab=97.02 E-value=0.0016 Score=40.34 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=47.9 Q ss_pred CEEEEECHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCE Q ss_conf 89998071019999999999984100246766676864999966656765424888478999999966521345765312 Q 537021.9.peg.4 178 NHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSI 257 (952) Q Consensus 178 ~~ilVDEfQDT~~~Q~~il~~L~~~~~~~~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~ 257 (952) ..|+|||.|..++-|...+-. + -+.+..++++||+.|+=-. +-..+.+..+.+.+... ..... T Consensus 124 ~~vIvDEaQN~t~~~~~~ilT--R--------ig~~sKli~~GD~~Q~d~~--~~~~sGl~~~~~~l~~~-----~~~~~ 186 (208) T 3b85_A 124 AFVILDEAQNTTPAQMKMFLT--R--------LGFGSKMVVTGDITQVDLP--GGQKSGLRLVRHILRGV-----DDVHF 186 (208) T ss_dssp EEEEECSGGGCCHHHHHHHHT--T--------BCTTCEEEEEEC--------------CCHHHHHHTTTC-----TTEEE T ss_pred CEEEECHHHCCCHHHHHHHHH--H--------CCCCCEEEEECCHHHCCCC--CCCCCCHHHHHHHHCCC-----CCCEE T ss_conf 677731564699999999998--7--------1788569992787761688--88877299999997399-----98559 Q ss_pred EECCCC--CCCCHHHHHHHH Q ss_conf 006866--688789999999 Q 537021.9.peg.4 258 IELPLS--FRSTADILTVVD 275 (952) Q Consensus 258 ~~L~~N--~RS~~~Ii~~~N 275 (952) +.|+.+ .||. ++..+. T Consensus 187 ~~l~~~divRs~--l~~~i~ 204 (208) T 3b85_A 187 SELTSSDVVRHQ--LVGHIV 204 (208) T ss_dssp EECCGGGCCCCH--HHHHHH T ss_pred EEECCCCEEECH--HHHHHH T ss_conf 997289728278--999999 No 14 >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, hydrolase; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Probab=96.56 E-value=0.006 Score=36.26 Aligned_cols=47 Identities=30% Similarity=0.338 Sum_probs=35.8 Q ss_pred ECHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 00122145677779981588776776544422234455566663123544457874779999999764444678878751 Q 537021.9.peg.4 575 MTVHTAKGLESPVVFLVDTGSQVFSHKHIKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVG 654 (952) Q Consensus 575 mTiH~SKGLEfpvV~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~RLlYVA 654 (952) ||||||.|.|||.||++- .....+ .-.++|+||| T Consensus 494 ~TvHKsQGse~d~Viv~l-~~~~~~---------------------------------------------~l~r~llYvA 527 (574) T 3e1s_A 494 LTVHRAQGSEWGTVLGVL-HEAHMP---------------------------------------------MLSRNLVYTA 527 (574) T ss_dssp EEHHHHTTCCEEEEEEEE-CGGGGG---------------------------------------------GCCHHHHHHH T ss_pred EEEECCCCCCCCEEEEEC-CCCCCC---------------------------------------------CCCCCEEEHH T ss_conf 367422004768799988-987665---------------------------------------------4552637462 Q ss_pred CCCCCCEEEEEEC Q ss_conf 1466528999831 Q 537021.9.peg.4 655 MTRASDQLIICKH 667 (952) Q Consensus 655 lTRAk~~L~l~~~ 667 (952) +||||++|+|.|. T Consensus 528 iTRAk~~l~ivg~ 540 (574) T 3e1s_A 528 LTRARDRFFSAGS 540 (574) T ss_dssp HHTEEEEEEEEEC T ss_pred HHHHHCEEEEEEC T ss_conf 6666384899998 No 15 >2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi} Probab=96.03 E-value=0.02 Score=32.54 Aligned_cols=55 Identities=24% Similarity=0.456 Sum_probs=42.5 Q ss_pred EEEEEEEEEEC-CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC Q ss_conf 97977899979-98999972580138999899999889999999999999679982789999855 Q 537021.9.peg.4 865 SGRIDQISISQ-QNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKILKDSYPNKSLVCLLIYVS 928 (952) Q Consensus 865 ~G~IDri~~~~-~~~~IiDyKT~~~~~~~~~~~~~~Y~~QL~~Y~~al~~~~p~~~V~~~l~y~~ 928 (952) .|+||+++.+. +..+||..|.++.. .+ +..||..|...+++-+ +.+|++-|+--+ T Consensus 156 ~G~iDll~~D~~g~~VvIElKr~~~~---~~-----~V~QL~rYv~~lr~~~-~~~VrGIlvA~~ 211 (251) T 2vld_A 156 HGIVDVMGVDKDGNIVVLELKRRKAD---LH-----AVSQMKRYVDSLKEEY-GENVRGILVAPS 211 (251) T ss_dssp TEEEEEEEECTTSCEEEEEECSSCBC---HH-----HHHHHHHHHHHHHHHH-CSCEEEEEEESC T ss_pred CCCEEEEEEECCCCEEEEEEEECCCC---HH-----HHHHHHHHHHHHHHCC-CCCCEEEEECCC T ss_conf 89655899907999999999704798---60-----7999999999987406-998269998686 No 16 >3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, structural genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum} Probab=95.49 E-value=0.064 Score=28.80 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=17.7 Q ss_pred CCCCCCCHHHHHHHHHHHHC Q ss_conf 86668878999999999711 Q 537021.9.peg.4 261 PLSFRSTADILTVVDKVFSI 280 (952) Q Consensus 261 ~~N~RS~~~Ii~~~N~~f~~ 280 (952) ++||||+++|++++|.++.. T Consensus 2 ~~sYR~t~~I~~~a~~~l~~ 21 (174) T 3dmn_A 2 NASYRSTQQITDFTKEILVN 21 (174) T ss_dssp -CCCCCCHHHHHHHHTTSCC T ss_pred CCCCCCHHHHHHHHHHHHHC T ss_conf 98889839999999999866 No 17 >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide- binding, transferase; HET: MSE; 2.01A {Staphylococcus aureus} Probab=89.94 E-value=0.47 Score=22.57 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=28.6 Q ss_pred HCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE Q ss_conf 61798999807101999999999998410024676667686499996 Q 537021.9.peg.4 174 DQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 (952) Q Consensus 174 ~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~~~~~~~~~~~l~~VG 220 (952) ...+++|+|||.|=-++.|..++..+..+ +..+++.| T Consensus 99 ~~~~d~I~IDEaQFf~~~~i~~l~~l~~~----------~~~Viv~G 135 (219) T 3e2i_A 99 LTNVDVIGIDEVQFFDDEIVSIVEKLSAD----------GHRVIVAG 135 (219) T ss_dssp CTTCSEEEECCGGGSCTHHHHHHHHHHHT----------TCEEEEEE T ss_pred CCCCCEEEEECHHHCCHHHHHHHHHHHCC----------CCEEEEEE T ss_conf 03588999952563326899999997336----------97179985 No 18 >1xx6_A Thymidine kinase; X-RAY, NESG, northeast structural genomics consortium, protein structure initiative, PSI; HET: ADP; 2.00A {Clostridium acetobutylicum atcc 824} SCOP: c.37.1.24 g.39.1.14 Probab=88.53 E-value=0.79 Score=20.91 Aligned_cols=49 Identities=22% Similarity=0.229 Sum_probs=34.0 Q ss_pred HHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE---ECCHHHHH Q ss_conf 999986179899980710199999999999841002467666768649999---66656765 Q 537021.9.peg.4 169 IRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV---GDEKQSIY 227 (952) Q Consensus 169 ~~~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~~~~~~~~~~~l~~V---GD~kQSIY 227 (952) +...+...+++|+|||.|=-+..|.+++..+... +..+++. ||-++-.+ T Consensus 74 ~~~~~~~~~dvI~IDEaQFf~~~~v~~~~~l~~~----------~~~Vi~~GLd~Df~~~~F 125 (191) T 1xx6_A 74 ILKYFEEDTEVIAIDEVQFFDDEIVEIVNKIAES----------GRRVICAGLDMDFRGKPF 125 (191) T ss_dssp HHHHCCTTCSEEEECSGGGSCTHHHHHHHHHHHT----------TCEEEEEECSBCTTSCBC T ss_pred HHHHHCCCCCEEEEECHHHCCHHHHHHHHHHHHC----------CCEEEEEEECCCCCCCCH T ss_conf 5563034577999930554677799999999715----------760698873465043834 No 19 >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate acceptor; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Probab=86.81 E-value=0.8 Score=20.87 Aligned_cols=45 Identities=27% Similarity=0.235 Sum_probs=32.5 Q ss_pred HHCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE---ECCHHHHH Q ss_conf 86179899980710199999999999841002467666768649999---66656765 Q 537021.9.peg.4 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV---GDEKQSIY 227 (952) Q Consensus 173 l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~~~~~~~~~~~l~~V---GD~kQSIY 227 (952) +...+++|+|||.|=-++.+.+++..+.. .+..+++. ||-++-.+ T Consensus 98 ~~~~~dvI~IDEaQFF~~~~~~~~~~l~~----------~~~~Viv~GLd~Df~~~~F 145 (214) T 2j9r_A 98 ITEEMDVIAIDEVQFFDGDIVEVVQVLAN----------RGYRVIVAGLDQDFRGLPF 145 (214) T ss_dssp CCSSCCEEEECCGGGSCTTHHHHHHHHHH----------TTCEEEEEECSBCTTSCBC T ss_pred HHCCCCEEEEECHHCCCHHHHHHHHHHHH----------CCCEEEEEEECCCCCCCCH T ss_conf 63158899995300074779999999982----------4864899873556056860 No 20 >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Probab=85.24 E-value=0.71 Score=21.26 Aligned_cols=44 Identities=27% Similarity=0.373 Sum_probs=31.9 Q ss_pred HHCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE---ECCHHHH Q ss_conf 86179899980710199999999999841002467666768649999---6665676 Q 537021.9.peg.4 173 IDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV---GDEKQSI 226 (952) Q Consensus 173 l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~~~~~~~~~~~l~~V---GD~kQSI 226 (952) +...+++|+|||.|=-++.|.+++..+.. .+..+++. ||-++-- T Consensus 73 ~~~~~~~I~IDEaQFf~~~~~~~l~~~~~----------~g~~Viv~GLd~Df~~~~ 119 (184) T 2orw_A 73 IEEDTRGVFIDEVQFFNPSLFEVVKDLLD----------RGIDVFCAGLDLTHKQNP 119 (184) T ss_dssp CCTTEEEEEECCGGGSCTTHHHHHHHHHH----------TTCEEEEEEESBCTTSCB T ss_pred HHCCCEEEEEEEHHHCCHHHHHHHHHHHH----------CCCEEEEEEECCCCCCCC T ss_conf 52242189983155331669999999982----------798999999657514586 No 21 >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Probab=75.20 E-value=2.5 Score=17.32 Aligned_cols=35 Identities=31% Similarity=0.147 Sum_probs=25.3 Q ss_pred CCCCEEEEECHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE Q ss_conf 179899980710199999999999841002467666768649999 Q 537021.9.peg.4 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAV 219 (952) Q Consensus 175 ~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~~~~~~~~~~~l~~V 219 (952) ..+++|+|||.|=-++....++..+.. .+..+++. T Consensus 88 ~~~dvI~IDEaQFf~d~i~~~~~~~~~----------~g~~Viv~ 122 (223) T 2b8t_A 88 DETKVIGIDEVQFFDDRICEVANILAE----------NGFVVIIS 122 (223) T ss_dssp TTCCEEEECSGGGSCTHHHHHHHHHHH----------TTCEEEEE T ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHH----------HCCEEEEE T ss_conf 677789985255425679999999986----------08689999 No 22 >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Probab=58.44 E-value=5.2 Score=15.01 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=23.5 Q ss_pred CCCCEEEEECHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE Q ss_conf 1798999807101999999999998410024676667686499996 Q 537021.9.peg.4 175 QEINHILIDEVQDTSLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVG 220 (952) Q Consensus 175 ~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~~~~~~~~~~~l~~VG 220 (952) ..+++|+|||.|=-+.+ .+++..+.. .+..+++-| T Consensus 89 ~~~dvI~IDEaQFF~dl-~~~v~~l~~----------~gk~VivaG 123 (234) T 2orv_A 89 LGVAVIGIDEGQFFPDI-VEFCEAMAN----------AGKTVIVAA 123 (234) T ss_dssp TTCSEEEESSGGGCTTH-HHHHHHHHH----------TTCEEEEEC T ss_pred CCCCEEEEECHHHHHHH-HHHHHHHHH----------CCCCEEEEE T ss_conf 67778998234366879-999999981----------587079998 No 23 >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Probab=55.81 E-value=5.7 Score=14.71 Aligned_cols=26 Identities=23% Similarity=0.045 Sum_probs=18.5 Q ss_pred CCCCEEEEECHHCCCHHHHHHHHHHHH Q ss_conf 179899980710199999999999841 Q 537021.9.peg.4 175 QEINHILIDEVQDTSLIQWEVIRSLTE 201 (952) Q Consensus 175 ~~~~~ilVDEfQDT~~~Q~~il~~L~~ 201 (952) ..+++|+|||.|=-+. ..++++.+.. T Consensus 90 ~~~d~I~IDEaQFf~d-i~~~v~~l~~ 115 (195) T 1w4r_A 90 LGVAVIGIDEGQFFPD-IVEFCEAMAN 115 (195) T ss_dssp HTCSEEEESSGGGCTT-HHHHHHHHHH T ss_pred CCCCEEEEEHHHHHHH-HHHHHHHHHH T ss_conf 5687999962456587-9999999982 No 24 >1cu1_A Protein (protease/helicase NS3); bifunctional,protease-helicase, hydrolase; 2.50A {Hepatitis c virus} SCOP: b.47.1.3 c.37.1.14 c.37.1.14 Probab=49.85 E-value=7 Score=14.06 Aligned_cols=19 Identities=16% Similarity=0.101 Sum_probs=11.2 Q ss_pred CCCCEEEEEECCHHHHHHH Q ss_conf 7686499996665676542 Q 537021.9.peg.4 211 SSPRTLFAVGDEKQSIYSF 229 (952) Q Consensus 211 ~~~~~l~~VGD~kQSIY~F 229 (952) ...+++++.|---|+=.|+ T Consensus 42 ~~~g~~~vl~t~tq~~~G~ 60 (645) T 1cu1_A 42 QVEGEVQVVSTATQSFLAT 60 (645) T ss_dssp CCCSSEEEEECSSCEEEEE T ss_pred CCCCEEEEEEECCEEEEEE T ss_conf 5533599987011104689 No 25 >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Probab=37.55 E-value=11 Score=12.76 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=10.6 Q ss_pred HHHHHHHHHCCCCCCEEEEEEC Q ss_conf 6788787511466528999831 Q 537021.9.peg.4 646 EYNRLLYVGMTRASDQLIICKH 667 (952) Q Consensus 646 Ee~RLlYVAlTRAk~~L~l~~~ 667 (952) |+.=-+|=++.....++++++. T Consensus 214 eelf~~fN~l~~~gkqIvitsd 235 (440) T 2z4s_A 214 TELFHTFNELHDSGKQIVICSD 235 (440) T ss_dssp HHHHHHHHHHHTTTCEEEEEES T ss_pred HHHHHHHHHHHHCCCEEEEECC T ss_conf 9999999999863985999689 No 26 >2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, PSI-2, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1 Probab=35.34 E-value=11 Score=12.52 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=18.5 Q ss_pred CCCCEEEEEECCHHHHHHHCCCCHH Q ss_conf 7686499996665676542488847 Q 537021.9.peg.4 211 SSPRTLFAVGDEKQSIYSFHGAEPK 235 (952) Q Consensus 211 ~~~~~l~~VGD~kQSIY~FRGAd~~ 235 (952) .....+.+|||. -+++|||-|-++ T Consensus 7 ~~s~~IaVIGd~-dtv~GFrLaGi~ 30 (102) T 2i4r_A 7 HHSHMLAVVGDP-DFTIGFMLAGIS 30 (102) T ss_dssp --CCEEEEEECH-HHHHHHHHTTCC T ss_pred CCCEEEEEEECH-HHHHHHHHCCCC T ss_conf 541699999488-988989982887 No 27 >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Probab=35.27 E-value=11 Score=12.51 Aligned_cols=19 Identities=11% Similarity=0.305 Sum_probs=10.4 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEEEECC Q ss_conf 999999841002467666768649999666 Q 537021.9.peg.4 193 WEVIRSLTEDFFVGKNTHSSPRTLFAVGDE 222 (952) Q Consensus 193 ~~il~~L~~~~~~~~~~~~~~~~l~~VGD~ 222 (952) .+|+..|- .+..++++|++ T Consensus 67 ~~il~~i~-----------~n~vvvV~G~T 85 (235) T 3llm_A 67 SEILEAIS-----------QNSVVIIRGAT 85 (235) T ss_dssp HHHHHHHH-----------HCSEEEEECCT T ss_pred HHHHHHHH-----------HCCEEEEEECC T ss_conf 99999999-----------79979999389 No 28 >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, replication initiation; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 2hcb_A* Probab=32.06 E-value=13 Score=12.16 Aligned_cols=83 Identities=18% Similarity=0.175 Sum_probs=48.1 Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCC---CHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCH Q ss_conf 775899999999831584248999998617989998071019---99999999998410024676667686499996665 Q 537021.9.peg.4 147 LDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDT---SLIQWEVIRSLTEDFFVGKNTHSSPRTLFAVGDEK 223 (952) Q Consensus 147 ldf~Dl~~~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT---~~~Q~~il~~L~~~~~~~~~~~~~~~~l~~VGD~k 223 (952) ++..|........+..... ..+..+++ .++.++||+.|-. ...|..+|..+-.- ...++.+++.+|- T Consensus 71 ~~~~~~~~~~~~a~~~~~~-~~~~~~~~-~~dlLiiDDi~~l~~~~~~qe~lf~l~n~~-------~~~~k~iiits~~- 140 (324) T 1l8q_A 71 SSADDFAQAMVEHLKKGTI-NEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTL-------YLLEKQIILASDR- 140 (324) T ss_dssp EEHHHHHHHHHHHHHHTCH-HHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHH-------HHTTCEEEEEESS- T ss_pred EEHHHHHHHHHHHHHCCCH-HHHHHHHH-CCCEEECCCHHHHCCCHHHHHHHHHHHHHH-------HHCCCCEEEECCC- T ss_conf 4499999999999864878-99998851-256400030665415557899999999999-------8709968985698- Q ss_pred HHHHHHCCCCHHHHHHH Q ss_conf 67654248884789999 Q 537021.9.peg.4 224 QSIYSFHGAEPKRVLRE 240 (952) Q Consensus 224 QSIY~FRGAd~~~~~~~ 240 (952) +...+.+-++++..++ T Consensus 141 -~P~~l~~~~~~L~SRl 156 (324) T 1l8q_A 141 -HPQKLDGVSDRLVSRF 156 (324) T ss_dssp -CGGGCTTSCHHHHHHH T ss_pred -CHHHHCCCCHHHHHHH T ss_conf -8565413226788786 No 29 >3fov_A UPF0102 protein RPA0323; structural genomics, APC7380, PSI-2, protein structure initiative; 1.88A {Rhodopseudomonas palustris CGA009} Probab=29.20 E-value=14 Score=11.83 Aligned_cols=62 Identities=18% Similarity=0.129 Sum_probs=33.7 Q ss_pred EEEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH-----HHHCCCCCEEEEEEECC Q ss_conf 97977899979989999725801389998999998899999999999-----99679982789999855 Q 537021.9.peg.4 865 SGRIDQISISQQNIFIFEYKTHHHVPQEIEHIPYTHIAQLSIYEKIL-----KDSYPNKSLVCLLIYVS 928 (952) Q Consensus 865 ~G~IDri~~~~~~~~IiDyKT~~~~~~~~~~~~~~Y~~QL~~Y~~al-----~~~~p~~~V~~~l~y~~ 928 (952) .|-||+|..+++.++.|.-||-.......+.+ ....|-.+.+.|- ...++..+++-=++.+. T Consensus 50 ~GEIDLIa~~~~~lvFVEVK~R~~~~~~~~~v--~~~K~~ri~~aA~~~l~~~~~~~~~~~RFDvi~v~ 116 (134) T 3fov_A 50 CGEIDLVAQRDALVAFVEVKARGNVDDAAYAV--TPRQQSRIVAAAEAWLSRHPEHAMSELRFDAILIA 116 (134) T ss_dssp TEEEEEEEEETTEEEEEEEEEC------CCCC--CHHHHHHHHHHHHHHHHHCGGGTTSEEEEEEEEEC T ss_pred CCCCCEEEEECCEEEEEEEEEECCCCCHHHCC--CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE T ss_conf 99608899849999999999703789976718--99999999999999999788789998899999990 No 30 >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} Probab=28.51 E-value=7 Score=14.02 Aligned_cols=41 Identities=22% Similarity=0.438 Sum_probs=24.8 Q ss_pred HHCCCCEEEEECHHCCCHHHHHHH-HHHHHHCCCCCCCCCCCCEEEEEECCHHHH Q ss_conf 861798999807101999999999-998410024676667686499996665676 Q 537021.9.peg.4 173 IDQEINHILIDEVQDTSLIQWEVI-RSLTEDFFVGKNTHSSPRTLFAVGDEKQSI 226 (952) Q Consensus 173 l~~~~~~ilVDEfQDT~~~Q~~il-~~L~~~~~~~~~~~~~~~~l~~VGD~kQSI 226 (952) +.+|..|.||+|++...+.-++-| ..| .++++.+||| +-.| T Consensus 135 ~NRrLPHaLV~~~~~~~~~~~~~f~~k~------------~g~tvL~Vge-~~~~ 176 (320) T 2hwk_A 135 VNRRLPHALVLHHNEHPQSDFSSFVSKL------------KGRTVLVVGE-KLSV 176 (320) T ss_dssp TTSCCSSCCCSCCCCCCCCCCHHHHHTS------------SCSEEEEEES-CCCC T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHC------------CCCEEEEECC-CCCC T ss_conf 4467883200002435877789999648------------8967999525-3357 No 31 >3kqn_A Serine protease/ntpase/helicase NS3; helicase-substrate transition-state complex, HCV, NS3 protein, helicase, DNA-binding; HET: ADP; 2.05A {Hepatitis c virus} PDB: 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 2zjo_A* 8ohm_A 1a1v_A* 2f55_A 1hei_A 1jr6_A 1onb_A Probab=23.90 E-value=17 Score=11.17 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=21.8 Q ss_pred CCCCEEEEECHHCCCHHHHHHHHHHHH Q ss_conf 179899980710199999999999841 Q 537021.9.peg.4 175 QEINHILIDEVQDTSLIQWEVIRSLTE 201 (952) Q Consensus 175 ~~~~~ilVDEfQDT~~~Q~~il~~L~~ 201 (952) .++++|+|||++-.+.-+...+..+.. T Consensus 94 ~~~~~VVIDEaH~~d~~~~~~l~~i~~ 120 (437) T 3kqn_A 94 GAYDIIICDECHSTDSTTILGIGTVLD 120 (437) T ss_dssp TCCSEEEETTTTCCSHHHHHHHHHHHH T ss_pred CCCCEEEEEEEEECCCCHHHHHHHHHH T ss_conf 344648998765237120034668987 No 32 >1ob8_A Holliday-junction resolvase; hydrolase, enzyme, homologous recombination, holliday junction resolving enzyme, nuclease, archaea; 1.8A {Sulfolobus solfataricus} SCOP: c.52.1.18 PDB: 1ob9_A Probab=23.85 E-value=17 Score=11.16 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=22.4 Q ss_pred CEEEEEEEEEEEEECCEEEEEECCCCCC Q ss_conf 5899979778999799899997258013 Q 537021.9.peg.4 861 DIIISGRIDQISISQQNIFIFEYKTHHH 888 (952) Q Consensus 861 ~~~i~G~IDri~~~~~~~~IiDyKT~~~ 888 (952) +..-.|-||.+...++.++.|.-||.+. T Consensus 31 ~~~~~g~iDiiA~~~~~~~~IEvKs~~~ 58 (135) T 1ob8_A 31 NSSPNPLPDIFATKGNTLLSIECKSTWE 58 (135) T ss_dssp ----CCSCSEEEEETTEEEEEEEEEESS T ss_pred CCCCCCCCCEEEECCCEEEEEEEEECCC T ss_conf 8888899888995399999999996349 No 33 >2jok_A Putative G-nucleotide exchange factor; guanine nucleotide exchange factor, type III secretion, SOPE, SOPE2, cell invasion; NMR {Burkholderia pseudomallei} SCOP: a.168.1.1 PDB: 2jol_A Probab=23.60 E-value=16 Score=11.47 Aligned_cols=13 Identities=46% Similarity=0.652 Sum_probs=9.8 Q ss_pred EECCHHHHHHHCC Q ss_conf 9666567654248 Q 537021.9.peg.4 219 VGDEKQSIYSFHG 231 (952) Q Consensus 219 VGD~kQSIY~FRG 231 (952) .||+||.|-.|-- T Consensus 3 ~gd~k~~ir~~~d 15 (186) T 2jok_A 3 TGDAKQAIRHFVD 15 (186) T ss_dssp CTTTTTHHHHHHH T ss_pred CCCHHHHHHHHHH T ss_conf 8758999999999 Done!