HHSEARCH alignment of GI: peg_410 and SCOP domain: g1qhh.1

Alignment
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=100.00  E-value=0  Score=410.06  Aligned_cols=424  Identities=24%  Similarity=0.315  Sum_probs=292.7

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf             99999999999999998699775899999999831584248999998617989998071019999999999984100246
Q 537021.9.peg.4  127 LTLAKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTEDFFVG  206 (952)
Q Consensus       127 ~~~~~~~~~~y~~~k~~~~~ldf~Dl~~~a~~lL~~~~~~~~~~~~l~~~~~~ilVDEfQDT~~~Q~~il~~L~~~~~~~  206 (952)
                      ......++..|.+.+...+.+||+|++..+..+++..+.   ++..+..+|+||+|||||||+++|++++..|..     
T Consensus       167 ~~~~~~~~~~y~~~~~~~~~i~~~d~~~~~~~~~~~~~~---i~~~~~~~~~~i~vDE~QD~~~~q~~~~~~l~~-----  238 (623)
T g1qhh.1         167 EKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPD---VLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAE-----  238 (623)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECTTHHHHHHHHHHHHSHH---HHHHHHHHCCEEEESCGGGCCHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHH---HHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHC-----
T ss_conf             999999999999999976998836789999998740999---998631242476402345415789999999734-----


Q ss_pred             CCCCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             76667686499996665676542488847899999996652134576531200686668878999999999711210012
Q 537021.9.peg.4  207 KNTHSSPRTLFAVGDEKQSIYSFHGAEPKRVLREKRINQKRATNAGQKFSIIELPLSFRSTADILTVVDKVFSIPENAQG  286 (952)
Q Consensus       207 ~~~~~~~~~l~~VGD~kQSIY~FRGAd~~~~~~~~~~f~~~~~~~~~~~~~~~L~~N~RS~~~Ii~~~N~~f~~~~~~~~  286 (952)
                           ...++++|||||||||+||||++..|.++...++        ..+.+.|++||||.+.|++++|.++........
T Consensus       239 -----~~~~l~~~gd~~q~iy~f~ga~~~~~~~~~~~~~--------~~~~~~L~~~~R~~~~i~~~~~~l~~~~~~~~~  305 (623)
T g1qhh.1         239 -----RFQNICAVGDADQSIYRWRGADIQNILSFERDYP--------NAKVILLEQNYRSTKRILQAANEVIEHNVNRKP  305 (623)
T ss_dssp             -----TTCCEEEEECGGGCCCGGGTCCTHHHHHHHHHST--------TCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCC
T ss_pred             -----CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCC--------CCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             -----5574798504654324667888899999987556--------766999013325443165678877643024564


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             33221222122334478887436511344432233431011111000111333368889999999999998358622125
Q 537021.9.peg.4  287 LSEDSTTTIRHRSSRIGQVGTVQLWEQVVSQHDSQCNPQQESWTSYFDSLPQESSASILARRIAYTISNMIGTDTIFSNG  366 (952)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~I~~l~~~~~~~~~~  366 (952)
                      ...        . .....+..+.+                          .........+..+...+..++..+.     
T Consensus       306 ~~~--------~-~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-----  345 (623)
T g1qhh.1         306 KRI--------W-TENPEGKPILY--------------------------YEAMNEADEAQFVAGRIREAVERGE-----  345 (623)
T ss_dssp             CCC--------B-CSSCCCCCEEE--------------------------EEEEEHHHHHHHHHHHHHHHHTTTS-----
T ss_pred             CCC--------C-CCCCCCCCEEE--------------------------EECCCHHHHHHHHHHHHHHHHHCCC-----
T ss_conf             300--------4-01368985489--------------------------8416577777765445789997389-----


Q ss_pred             CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCC
Q ss_conf             43687824468986153101224899999874169736604862112331052268768887481311024543058774
Q 537021.9.peg.4  367 KKRVIQAKDILVLVRKRKDTPLITFLTRFLKNDYKISVVGNDRFILTDHLAIKDLMALGRFILSQEDDLSFVCMLKSPLF  446 (952)
Q Consensus       367 ~~r~~~~~diaVL~r~~~~~~~~~~~l~al~~~~~ip~~~~~~~~~~~~~~v~~l~a~l~~l~~p~~~~~~~~~L~spl~  446 (952)
                          +.+.|++||+|++.+...+...|    ...+||+...++..+++++++++++++++++.+|.++.++..++.++..
T Consensus       346 ----~~~~d~aiL~r~~~~~~~l~~~L----~~~~ip~~~~~~~~~~~~~ei~~i~~~l~~~~~~~d~~a~~~~l~~~~~  417 (623)
T g1qhh.1         346 ----RRYRDFAVLYRTNAQSRVMEEML----LKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKR  417 (623)
T ss_dssp             ----CCGGGEEEEESSGGGHHHHHHHH----HHTTCCEEESSSCCGGGSHHHHHHHHHHHHHHCTTCHHHHHHHTTSSCC
T ss_pred             ----CCCCCEEEEEECHHHHHHHHHHH----HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
T ss_conf             ----88556489982528799999999----9779999996897602459999999999998098866999999846301


Q ss_pred             CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHCCCH---
Q ss_conf             78888999987301268657888764311115899999999999998642199899999998503469999811352---
Q 537021.9.peg.4  447 NFSEDDIFKICTQRHETETVYEYIQKFANCGISKFQHVIKYIHELIHIAQFCSPHDFFTLILGAKKGRQQFISRFGN---  523 (952)
Q Consensus       447 g~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---  523 (952)
                      ++............      ....................................+...++...............   
T Consensus       418 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (623)
T g1qhh.1         418 GIGASTIDLFEALG------ELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTELVEEVLDKSGYREMLKAERTIEAQ  491 (623)
T ss_dssp             TTTSCCC-CHHHHH------THHHHCCTTHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHTSHHHHHHHHCSHHHH
T ss_pred             CCCCHHHHHHHHHH------HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHCCCHHHH
T ss_conf             23301111366666------542000456665566788988888888863134689999999852709898630355688


Q ss_pred             HHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECHHHCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf             3899999999999998520-568989999988501001321123578853030012214567777998158877677654
Q 537021.9.peg.4  524 EVIDVLDEFLNFTLRNEQN-SYSSLQELISELEQYPPTIKRAHSANHNEVRIMTVHTAKGLESPVVFLVDTGSQVFSHKH  602 (952)
Q Consensus       524 ~~~~~l~~l~~~a~~~e~~-~~~~l~~f~~~l~~~~~~~~~~~~~~~d~V~imTiH~SKGLEfpvV~i~~l~~~~~~~~~  602 (952)
                      ........++..+..++.. ....+..|+..+..          ..+++|+|||||+|||||||+|||+|+.++.+|+..
T Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----------~~~~~V~l~TiH~aKGlE~D~Vii~~~~~~~~P~~~  561 (623)
T g1qhh.1         492 SRLENLDEFLSVTKHFENVSDDKSLIAFLTDLAL----------ISGDAVMLMTLHAAKGLEFPVVFLIGMEEGIFPHNR  561 (623)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHTTT----------CCCCCEEEEEGGGGTTCCEEEEEECCCBTBTTTBTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----------CCCCCEEEEEHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf             8899999999999998743871159999998750----------679956997776320256888999656169887634


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf             4422234455566663123544457874779999999764444678878751146652899983167
Q 537021.9.peg.4  603 IKKMHIMPSLNDDPGIPIWIPQSKSRNNIVSDLIKHLKKSTQEEYNRLLYVGMTRASDQLIICKHSN  669 (952)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ee~RLlYVAlTRAk~~L~l~~~~~  669 (952)
                      ...                                  .....+||+|||||||||||++|+|+.+..
T Consensus       562 ~~~----------------------------------~~~~~~EErRLlYVA~TRA~~~L~i~~~~~  594 (623)
T g1qhh.1         562 SLE----------------------------------DDDEMEEERRLAYVGITRAEEELVLTSAQM  594 (623)
T ss_dssp             TTT----------------------------------CHHHHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CCC----------------------------------CCHHHHHHHHHHHHHHHHHHHEEEEEEECC
T ss_conf             579----------------------------------835489999999978967845659987370


SCOP domain information

class:
fold:
superfamily:
family:
domain:
species: